Query 008769
Match_columns 554
No_of_seqs 228 out of 1130
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 16:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08866 SRPBCC_11 Ligand-bindi 99.9 6.2E-23 1.3E-27 185.0 19.4 141 168-310 1-144 (144)
2 PRK10724 hypothetical protein; 99.9 1.5E-20 3.3E-25 177.4 18.2 146 162-314 11-157 (158)
3 cd07813 COQ10p_like Coenzyme Q 99.9 1.2E-20 2.6E-25 170.1 16.7 135 169-310 2-137 (138)
4 cd08861 OtcD1_ARO-CYC_like N-t 99.8 5.8E-18 1.3E-22 152.3 17.7 137 168-310 1-142 (142)
5 cd08860 TcmN_ARO-CYC_like N-te 99.8 2.2E-17 4.8E-22 153.5 18.1 139 168-311 3-145 (146)
6 PF03364 Polyketide_cyc: Polyk 99.8 1.5E-17 3.3E-22 147.7 14.7 125 174-305 1-130 (130)
7 cd07819 SRPBCC_2 Ligand-bindin 99.7 1.1E-16 2.4E-21 142.2 17.6 134 167-308 3-140 (140)
8 COG2867 Oligoketide cyclase/li 99.7 3.5E-17 7.5E-22 151.7 13.1 142 166-314 2-145 (146)
9 cd07817 SRPBCC_8 Ligand-bindin 99.6 4.1E-15 8.8E-20 132.3 14.9 133 168-309 2-138 (139)
10 cd08876 START_1 Uncharacterize 99.6 2.6E-14 5.6E-19 136.7 19.5 162 131-308 18-194 (195)
11 cd08865 SRPBCC_10 Ligand-bindi 99.6 7.4E-14 1.6E-18 123.0 15.9 136 168-310 1-140 (140)
12 PF10604 Polyketide_cyc2: Poly 99.6 6.7E-13 1.5E-17 117.3 21.9 137 165-309 1-139 (139)
13 cd07821 PYR_PYL_RCAR_like Pyra 99.6 1.8E-13 3.9E-18 120.8 16.7 133 167-309 2-140 (140)
14 cd07818 SRPBCC_1 Ligand-bindin 99.5 2.6E-13 5.6E-18 123.4 16.8 139 166-310 2-150 (150)
15 cd05018 CoxG Carbon monoxide d 99.5 3.1E-13 6.7E-18 120.7 16.8 137 167-309 2-144 (144)
16 cd08862 SRPBCC_Smu440-like Lig 99.5 8.3E-13 1.8E-17 117.3 17.3 136 167-310 2-138 (138)
17 cd07824 SRPBCC_6 Ligand-bindin 99.5 1.5E-12 3.2E-17 119.3 15.8 133 167-307 2-145 (146)
18 cd08906 START_STARD3-like Chol 99.5 1E-12 2.2E-17 129.3 15.7 164 130-310 25-208 (209)
19 cd07822 SRPBCC_4 Ligand-bindin 99.4 1.1E-11 2.3E-16 109.6 17.6 137 168-309 2-141 (141)
20 cd08877 START_2 Uncharacterize 99.4 1.6E-11 3.5E-16 120.3 16.6 165 129-310 21-214 (215)
21 cd08905 START_STARD1-like Chol 99.4 6.6E-12 1.4E-16 123.4 13.8 163 130-309 25-207 (209)
22 cd08874 START_STARD9-like C-te 99.3 2.1E-11 4.5E-16 120.1 15.8 165 127-307 19-202 (205)
23 cd07820 SRPBCC_3 Ligand-bindin 99.3 3.8E-11 8.3E-16 108.8 15.8 106 169-279 2-112 (137)
24 cd07823 SRPBCC_5 Ligand-bindin 99.3 4.4E-11 9.5E-16 109.6 15.9 134 168-309 1-145 (146)
25 cd08868 START_STARD1_3_like Ch 99.3 6.6E-11 1.4E-15 115.5 17.4 164 131-310 25-207 (208)
26 cd07814 SRPBCC_CalC_Aha1-like 99.3 5.7E-11 1.2E-15 105.4 15.5 135 168-310 2-139 (139)
27 cd07812 SRPBCC START/RHO_alpha 99.3 1.2E-10 2.6E-15 99.2 16.2 136 169-307 2-140 (141)
28 cd08871 START_STARD10-like Lip 99.3 1.5E-10 3.2E-15 114.1 18.4 161 130-313 23-205 (222)
29 cd08911 START_STARD7-like Lipi 99.3 1.2E-10 2.6E-15 114.2 16.7 159 130-310 21-206 (207)
30 cd08903 START_STARD5-like Lipi 99.2 7E-10 1.5E-14 109.0 18.9 165 130-310 22-207 (208)
31 cd07825 SRPBCC_7 Ligand-bindin 99.2 3E-10 6.5E-15 102.4 14.0 135 167-309 1-144 (144)
32 cd08870 START_STARD2_7-like Li 99.2 9.8E-10 2.1E-14 107.7 18.3 158 130-310 22-208 (209)
33 cd08869 START_RhoGAP C-termina 99.2 3.8E-10 8.3E-15 109.9 15.2 164 127-307 16-193 (197)
34 cd08910 START_STARD2-like Lipi 99.2 3.2E-10 6.9E-15 111.4 14.0 158 130-310 25-206 (207)
35 cd08913 START_STARD14-like Lip 99.1 9.7E-10 2.1E-14 110.8 16.1 153 129-298 58-226 (240)
36 COG5637 Predicted integral mem 99.1 4.5E-10 9.7E-15 107.7 12.4 139 165-311 69-211 (217)
37 cd00177 START Lipid-binding ST 99.1 8.1E-09 1.8E-13 96.6 19.3 160 130-307 15-191 (193)
38 cd08873 START_STARD14_15-like 99.1 3.4E-09 7.5E-14 106.5 16.5 135 129-278 54-204 (235)
39 cd08872 START_STARD11-like Cer 99.1 3.3E-09 7.2E-14 106.5 16.1 171 131-315 27-231 (235)
40 cd08914 START_STARD15-like Lip 99.1 1.5E-09 3.3E-14 109.0 13.6 142 129-289 55-213 (236)
41 cd08867 START_STARD4_5_6-like 99.1 1.4E-08 3.1E-13 99.0 19.3 162 130-308 22-205 (206)
42 smart00234 START in StAR and p 99.0 1.4E-08 3E-13 97.7 17.5 167 130-311 19-203 (206)
43 cd07816 Bet_v1-like Ligand-bin 98.9 3.1E-07 6.8E-12 85.4 19.1 112 167-281 2-122 (148)
44 PF01852 START: START domain; 98.8 5.7E-07 1.2E-11 86.3 19.9 168 128-311 17-203 (206)
45 cd08908 START_STARD12-like C-t 98.8 1.2E-07 2.7E-12 93.5 14.4 157 127-306 24-199 (204)
46 KOG3177 Oligoketide cyclase/li 98.8 6.5E-08 1.4E-12 94.8 11.3 146 164-316 66-216 (227)
47 cd08866 SRPBCC_11 Ligand-bindi 98.7 3.4E-08 7.3E-13 89.1 8.1 64 1-64 81-144 (144)
48 cd08893 SRPBCC_CalC_Aha1-like_ 98.7 5.8E-07 1.3E-11 79.7 13.6 129 168-310 2-136 (136)
49 PF06240 COXG: Carbon monoxide 98.6 2.8E-06 6.1E-11 78.2 18.2 133 170-310 1-137 (140)
50 COG3427 Carbon monoxide dehydr 98.6 1.6E-06 3.5E-11 81.5 16.2 134 168-308 3-139 (146)
51 cd08899 SRPBCC_CalC_Aha1-like_ 98.6 4.2E-07 9.1E-12 84.9 11.5 133 162-312 7-139 (157)
52 cd08904 START_STARD6-like Lipi 98.5 6.2E-06 1.4E-10 81.5 18.8 162 130-308 22-203 (204)
53 PF03364 Polyketide_cyc: Polyk 98.5 2.6E-07 5.6E-12 82.0 6.2 59 1-59 69-130 (130)
54 cd08894 SRPBCC_CalC_Aha1-like_ 98.4 2.2E-05 4.9E-10 71.4 16.4 134 168-310 2-139 (139)
55 cd08898 SRPBCC_CalC_Aha1-like_ 98.4 1.3E-05 2.8E-10 72.0 14.4 131 167-310 2-145 (145)
56 cd08909 START_STARD13-like C-t 98.3 1.7E-05 3.6E-10 78.7 15.7 156 129-307 26-201 (205)
57 cd08897 SRPBCC_CalC_Aha1-like_ 98.3 1.2E-05 2.7E-10 72.5 13.2 127 168-310 2-133 (133)
58 cd07813 COQ10p_like Coenzyme Q 98.3 1.5E-06 3.3E-11 78.3 6.3 63 1-64 75-137 (138)
59 cd08861 OtcD1_ARO-CYC_like N-t 98.2 4.2E-06 9E-11 75.3 6.9 60 4-64 81-142 (142)
60 cd08896 SRPBCC_CalC_Aha1-like_ 98.1 0.00019 4E-09 65.9 17.2 134 168-309 2-145 (146)
61 cd08902 START_STARD4-like Lipi 98.1 0.00013 2.8E-09 72.1 16.5 161 131-308 24-201 (202)
62 cd08895 SRPBCC_CalC_Aha1-like_ 98.1 0.00022 4.9E-09 65.4 16.4 130 168-309 2-145 (146)
63 cd08901 SRPBCC_CalC_Aha1-like_ 98.1 9.3E-05 2E-09 67.3 13.6 131 168-311 2-133 (136)
64 PF08327 AHSA1: Activator of H 98.0 0.00021 4.6E-09 62.4 14.6 121 175-309 1-124 (124)
65 cd08900 SRPBCC_CalC_Aha1-like_ 98.0 0.00045 9.8E-09 63.0 16.6 133 168-310 2-143 (143)
66 PF00407 Bet_v_1: Pathogenesis 98.0 0.00053 1.2E-08 64.7 17.1 135 166-308 4-148 (151)
67 cd08891 SRPBCC_CalC Ligand-bin 97.9 0.00036 7.9E-09 64.2 15.1 134 168-310 2-149 (149)
68 PRK10724 hypothetical protein; 97.9 2E-05 4.4E-10 74.8 6.5 66 1-68 91-157 (158)
69 cd07826 SRPBCC_CalC_Aha1-like_ 97.9 0.0011 2.3E-08 60.9 17.4 134 168-309 2-141 (142)
70 COG3832 Uncharacterized conser 97.5 0.0029 6.3E-08 59.2 14.3 138 162-309 4-148 (149)
71 cd08907 START_STARD8-like C-te 97.4 0.0044 9.5E-08 61.6 15.0 164 125-307 22-201 (205)
72 cd07819 SRPBCC_2 Ligand-bindin 97.4 0.00032 6.9E-09 62.2 6.3 58 3-62 82-140 (140)
73 cd08876 START_1 Uncharacterize 97.3 0.00058 1.3E-08 65.4 7.4 57 6-63 139-195 (195)
74 cd08892 SRPBCC_Aha1 Putative h 97.2 0.0075 1.6E-07 54.3 12.5 120 168-309 2-125 (126)
75 cd07817 SRPBCC_8 Ligand-bindin 97.0 0.0019 4.1E-08 57.3 6.9 60 2-63 75-138 (139)
76 PTZ00220 Activator of HSP-90 A 96.9 0.006 1.3E-07 55.9 9.4 122 174-308 1-126 (132)
77 cd08860 TcmN_ARO-CYC_like N-te 96.8 0.0044 9.4E-08 57.9 8.0 60 3-64 83-144 (146)
78 cd07821 PYR_PYL_RCAR_like Pyra 96.3 0.017 3.7E-07 50.8 7.6 58 5-63 83-140 (140)
79 cd07818 SRPBCC_1 Ligand-bindin 96.0 0.018 4E-07 52.2 6.8 60 3-64 86-150 (150)
80 cd08865 SRPBCC_10 Ligand-bindi 96.0 0.025 5.4E-07 49.5 7.2 58 3-63 80-139 (140)
81 PLN00188 enhanced disease resi 96.0 0.16 3.5E-06 58.6 15.3 168 129-311 197-393 (719)
82 cd05018 CoxG Carbon monoxide d 95.9 0.028 6.1E-07 49.9 7.4 57 4-62 84-143 (144)
83 KOG2761 START domain-containin 95.6 0.64 1.4E-05 46.9 16.1 169 127-311 26-215 (219)
84 COG4276 Uncharacterized conser 95.6 0.42 9.1E-06 45.0 13.6 128 168-301 4-139 (153)
85 PF10604 Polyketide_cyc2: Poly 95.0 0.1 2.3E-06 45.8 7.7 57 5-63 81-139 (139)
86 PF10698 DUF2505: Protein of u 95.0 0.78 1.7E-05 43.4 14.0 138 169-309 2-156 (159)
87 cd08862 SRPBCC_Smu440-like Lig 94.9 0.085 1.8E-06 46.6 6.8 59 4-63 78-137 (138)
88 cd08870 START_STARD2_7-like Li 93.6 0.26 5.6E-06 48.5 7.9 58 7-64 150-208 (209)
89 cd08877 START_2 Uncharacterize 93.6 0.2 4.4E-06 49.3 7.1 57 7-64 157-214 (215)
90 cd08868 START_STARD1_3_like Ch 93.5 0.13 2.7E-06 50.5 5.4 58 8-65 150-208 (208)
91 cd07824 SRPBCC_6 Ligand-bindin 93.4 0.15 3.2E-06 46.7 5.4 56 3-61 83-145 (146)
92 cd08911 START_STARD7-like Lipi 93.2 0.32 6.9E-06 48.0 7.7 57 8-64 148-206 (207)
93 cd08871 START_STARD10-like Lip 92.6 0.39 8.5E-06 47.5 7.5 61 8-69 147-207 (222)
94 cd08910 START_STARD2-like Lipi 92.6 0.41 8.9E-06 47.3 7.6 56 8-64 151-206 (207)
95 PF01852 START: START domain; 91.7 0.53 1.1E-05 45.1 7.1 57 8-65 147-203 (206)
96 cd07812 SRPBCC START/RHO_alpha 91.6 0.82 1.8E-05 38.4 7.4 53 8-61 85-140 (141)
97 cd08906 START_STARD3-like Chol 91.1 0.66 1.4E-05 46.0 7.2 57 8-64 152-208 (209)
98 cd08864 SRPBCC_DUF3074 DUF3074 90.6 1.5 3.4E-05 43.7 9.2 53 253-307 149-205 (208)
99 cd08905 START_STARD1-like Chol 90.5 0.88 1.9E-05 45.0 7.4 56 8-63 151-207 (209)
100 cd07820 SRPBCC_3 Ligand-bindin 89.8 0.88 1.9E-05 41.1 6.3 41 1-43 80-120 (137)
101 COG2867 Oligoketide cyclase/li 89.0 0.9 2E-05 43.2 5.8 65 2-67 80-144 (146)
102 PF08982 DUF1857: Domain of un 88.9 11 0.00024 35.9 13.1 120 177-310 19-147 (149)
103 smart00234 START in StAR and p 87.6 1.3 2.7E-05 42.7 6.1 57 8-65 147-203 (206)
104 cd07822 SRPBCC_4 Ligand-bindin 83.9 2.7 5.9E-05 36.7 5.9 55 8-63 86-141 (141)
105 cd08903 START_STARD5-like Lipi 83.1 3.3 7E-05 41.0 6.6 59 4-63 148-206 (208)
106 cd08867 START_STARD4_5_6-like 82.7 3.9 8.4E-05 40.0 7.0 55 8-62 150-205 (206)
107 cd07823 SRPBCC_5 Ligand-bindin 82.4 3.1 6.7E-05 37.9 5.8 54 8-63 89-145 (146)
108 COG2005 ModE N-terminal domain 82.0 0.81 1.8E-05 42.8 1.8 47 399-452 15-61 (130)
109 cd08869 START_RhoGAP C-termina 81.7 2.2 4.9E-05 41.7 4.9 51 8-60 142-192 (197)
110 cd08872 START_STARD11-like Cer 81.3 3.2 6.9E-05 42.1 5.9 53 11-65 175-227 (235)
111 cd00177 START Lipid-binding ST 78.3 6.7 0.00015 36.4 6.7 51 8-60 139-189 (193)
112 cd08863 SRPBCC_DUF1857 DUF1857 77.9 65 0.0014 30.6 14.9 91 176-278 17-109 (141)
113 cd07814 SRPBCC_CalC_Aha1-like 76.8 6.9 0.00015 34.3 6.0 56 6-64 84-139 (139)
114 PF00730 HhH-GPD: HhH-GPD supe 73.4 6.4 0.00014 34.2 4.9 54 371-428 8-62 (108)
115 PF09366 DUF1997: Protein of u 70.4 89 0.0019 29.6 12.2 102 207-311 28-147 (158)
116 PF00126 HTH_1: Bacterial regu 69.3 2.2 4.8E-05 33.7 0.9 38 406-450 4-41 (60)
117 PF01388 ARID: ARID/BRIGHT DNA 68.5 12 0.00027 31.8 5.5 49 372-424 5-57 (92)
118 cd08875 START_ArGLABRA2_like C 66.7 32 0.00069 35.2 8.7 38 168-205 62-100 (229)
119 COG4891 Uncharacterized conser 62.2 31 0.00067 30.7 6.6 71 238-310 20-92 (93)
120 smart00501 BRIGHT BRIGHT, ARID 60.7 8.3 0.00018 33.2 2.9 44 374-421 3-50 (93)
121 cd08874 START_STARD9-like C-te 59.8 21 0.00045 35.6 5.9 50 8-58 147-199 (205)
122 cd08908 START_STARD12-like C-t 58.4 17 0.00037 36.3 5.1 51 8-60 149-199 (204)
123 TIGR00637 ModE_repress ModE mo 56.3 6 0.00013 34.9 1.3 39 407-452 8-46 (99)
124 PF02713 DUF220: Domain of unk 56.2 5.7 0.00012 33.6 1.1 13 6-18 30-42 (74)
125 PRK10676 DNA-binding transcrip 52.7 6.3 0.00014 40.6 1.0 44 402-452 18-61 (263)
126 cd08803 Death_ank3 Death domai 51.6 14 0.00031 31.9 2.8 64 417-483 17-84 (84)
127 cd08909 START_STARD13-like C-t 49.8 44 0.00095 33.5 6.4 51 8-60 150-200 (205)
128 cd02646 R3H_G-patch R3H domain 46.4 16 0.00036 29.0 2.3 42 374-428 1-42 (58)
129 cd08904 START_STARD6-like Lipi 44.9 64 0.0014 32.2 6.7 42 11-52 151-193 (204)
130 PRK01905 DNA-binding protein F 44.2 64 0.0014 27.1 5.6 55 445-500 5-65 (77)
131 PF13309 HTH_22: HTH domain 42.2 21 0.00046 29.1 2.3 53 445-497 2-54 (64)
132 cd08902 START_STARD4-like Lipi 42.2 81 0.0018 31.8 6.9 51 11-61 149-200 (202)
133 smart00501 BRIGHT BRIGHT, ARID 41.5 28 0.00061 29.9 3.2 47 445-492 5-51 (93)
134 PF11687 DUF3284: Domain of un 40.0 1.8E+02 0.0038 26.5 8.2 42 237-279 62-103 (120)
135 PF01471 PG_binding_1: Putativ 38.7 82 0.0018 24.1 5.1 36 434-471 20-55 (57)
136 cd08805 Death_ank1 Death domai 38.2 19 0.00042 31.2 1.6 64 417-483 17-84 (84)
137 cd08804 Death_ank2 Death domai 37.3 35 0.00076 29.3 3.1 63 418-483 18-84 (84)
138 PF02954 HTH_8: Bacterial regu 36.1 48 0.001 24.5 3.3 31 470-500 2-33 (42)
139 PF00249 Myb_DNA-binding: Myb- 33.0 43 0.00093 25.2 2.6 20 407-426 11-32 (48)
140 PF14549 P22_Cro: DNA-binding 32.0 43 0.00093 27.3 2.6 22 479-500 3-24 (60)
141 cd08317 Death_ank Death domain 31.3 38 0.00083 28.7 2.3 60 417-483 17-84 (84)
142 KOG1739 Serine/threonine prote 31.0 1.1E+02 0.0025 34.7 6.4 48 266-315 560-607 (611)
143 PRK03601 transcriptional regul 29.2 32 0.0007 34.5 1.8 23 407-429 7-29 (275)
144 cd08913 START_STARD14-like Lip 28.7 90 0.0019 32.0 4.9 38 9-48 185-222 (240)
145 PRK10837 putative DNA-binding 26.1 47 0.001 33.1 2.3 22 408-429 10-31 (290)
146 PF01388 ARID: ARID/BRIGHT DNA 25.8 89 0.0019 26.5 3.7 49 445-494 9-57 (92)
147 PRK01905 DNA-binding protein F 24.9 1.6E+02 0.0035 24.6 5.0 33 397-429 31-64 (77)
148 PRK09986 DNA-binding transcrip 24.6 53 0.0012 32.7 2.4 37 407-450 13-49 (294)
149 PF14549 P22_Cro: DNA-binding 23.9 71 0.0015 26.0 2.5 21 409-429 3-23 (60)
150 PRK11242 DNA-binding transcrip 23.6 50 0.0011 33.0 2.0 21 408-428 8-28 (296)
151 PF00730 HhH-GPD: HhH-GPD supe 23.5 1.6E+02 0.0034 25.4 4.9 41 443-488 11-51 (108)
152 TIGR03339 phn_lysR aminoethylp 23.3 46 0.00099 32.7 1.6 21 408-428 4-24 (279)
153 PRK10341 DNA-binding transcrip 22.7 64 0.0014 33.0 2.6 31 393-429 5-35 (312)
154 CHL00180 rbcR LysR transcripti 21.9 62 0.0013 32.9 2.3 36 408-450 12-47 (305)
155 cd07816 Bet_v1-like Ligand-bin 21.8 2.2E+02 0.0048 26.3 5.8 36 1-37 82-122 (148)
156 cd00056 ENDO3c endonuclease II 21.7 2E+02 0.0043 26.5 5.5 102 372-488 13-125 (158)
157 TIGR02424 TF_pcaQ pca operon t 21.4 56 0.0012 32.8 1.9 22 408-429 10-31 (300)
158 PRK09791 putative DNA-binding 21.4 56 0.0012 33.0 1.8 22 408-429 12-33 (302)
159 PRK13348 chromosome replicatio 21.2 63 0.0014 32.5 2.1 21 408-428 9-29 (294)
160 cd08873 START_STARD14_15-like 20.3 1.2E+02 0.0027 31.0 4.0 29 7-36 178-206 (235)
161 cd08779 Death_PIDD Death Domai 20.2 1.1E+02 0.0024 26.4 3.1 65 417-484 15-84 (86)
162 PRK11139 DNA-binding transcrip 20.1 58 0.0013 32.8 1.6 21 408-428 13-33 (297)
No 1
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.91 E-value=6.2e-23 Score=184.99 Aligned_cols=141 Identities=44% Similarity=0.737 Sum_probs=124.0
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecC--CCeEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH--EQEISFE 245 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~--~rrIsf~ 245 (554)
|++++.|+|||++||++|+|+++||+|+|.|.+++++.+.+++.++++.+..+++...+...+++++.+.+ ++.+.|+
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 80 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE 80 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence 46899999999999999999999999999999999998877777777766666555556666666666544 6899999
Q ss_pred EEecCCceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 246 QVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 246 ~veGdfr~f~G~W~Leplgd-G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
+++|+|..+.|.|+|++.++ ++|+|+|.++++|. +.+|.++++.++++.+..+|++||++||+
T Consensus 81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~--~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPD--FFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987 68999999999985 57899999999999999999999999984
No 2
>PRK10724 hypothetical protein; Provisional
Probab=99.86 E-value=1.5e-20 Score=177.36 Aligned_cols=146 Identities=15% Similarity=0.254 Sum_probs=128.6
Q ss_pred CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEE-EEeccceeEEEEEEEEEEEEeecCCC
Q 008769 162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQ 240 (554)
Q Consensus 162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~-q~g~~gil~~~~~~rvvLdv~E~~~r 240 (554)
+..|-.++.+++|++|+++||+++.|+++||+|+|+|++++++++.+++++.. ..+..++ ...|++++++ .+++
T Consensus 11 ~~~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~-~~~f~srv~~----~~~~ 85 (158)
T PRK10724 11 EIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGI-SKTFTTRNQL----TSNQ 85 (158)
T ss_pred cCcCCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCc-cEEEEEEEEe----cCCC
Confidence 34477899999999999999999999999999999999999999988876554 4566764 4677777665 4677
Q ss_pred eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 314 (554)
Q Consensus 241 rIsf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~ 314 (554)
+|.|.+++|+|+.++|.|+|+|.++++|+|+|.++|+++ .+++..+++..+.+....+++||++||+++|+-
T Consensus 86 ~I~~~~~~GpF~~l~g~W~f~p~~~~~t~V~~~l~fef~--s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 86 SILMQLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFT--NKLIELAFGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred EEEEEecCCChhhccceEEEEECCCCCEEEEEEEEEEEc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998778999999999985 578999999999999999999999999998864
No 3
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.86 E-value=1.2e-20 Score=170.07 Aligned_cols=135 Identities=23% Similarity=0.378 Sum_probs=114.5
Q ss_pred EEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE-EeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769 169 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQEISFEQV 247 (554)
Q Consensus 169 ~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q-~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v 247 (554)
+.++.|+||+++||++++|+++||+|+|+|.+++++++.++...++. .+..+ +...++++++ ..++++|.|.++
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~i~~~~~ 76 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGG-IRESFTSRVT----LVPPESIEAELV 76 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeecc-ccEEEEEEEE----ecCCCEEEEEec
Confidence 57899999999999999999999999999999999998877654433 23322 1234444433 346889999999
Q ss_pred ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 248 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 248 eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
+|+|+.++|.|+|+|.++|+|+|+|.++++|+ +++|.++++.++.+.+..+|.+|+++|++
T Consensus 77 ~g~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 77 DGPFKHLEGEWRFKPLGENACKVEFDLEFEFK--SRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred CCChhhceeEEEEEECCCCCEEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999889999999999995 67999999999999999999999999875
No 4
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.79 E-value=5.8e-18 Score=152.26 Aligned_cols=137 Identities=23% Similarity=0.366 Sum_probs=110.4
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCE--EEEEEEeccceeEEEEEEEEEEEEeecC-CCeEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK--VRILQEGCKGLLYMVLHARVVMDICEQH-EQEISF 244 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~--vrv~q~g~~gil~~~~~~rvvLdv~E~~-~rrIsf 244 (554)
++.+++|+||+++||++|+|+++||+|+|+ ..++++...++. +..+..+..+.. +.+.... ...+ +++|.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~----~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV-HTWTSRR----VLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE-EEEEEEE----EEcCCCCEEEE
Confidence 357899999999999999999999999999 888888765554 233455444432 3443322 2234 778999
Q ss_pred EEEe--cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 245 EQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 245 ~~ve--Gdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
.++. |+|..++|.|+|++.++++|+|+|.+++++....+++..++.+.+.+.++.+|++||+++|+
T Consensus 75 ~~~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 75 RQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred EEeeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 9987 88889999999999987789999999999864456788899999999999999999999984
No 5
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.77 E-value=2.2e-17 Score=153.48 Aligned_cols=139 Identities=17% Similarity=0.355 Sum_probs=111.1
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE---EeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEISF 244 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q---~g~~gil~~~~~~rvvLdv~E~~~rrIsf 244 (554)
.+.+|+|+|||++||++++|+++||+|+|.|++++++++.+.+..+.. ....++ ...|+++++++ .+..+|.|
T Consensus 3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~-~~~w~s~~~~~---~~~~~i~~ 78 (146)
T cd08860 3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGT-VWSWVSERTLD---PVNRTVRA 78 (146)
T ss_pred ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCE-EEEEEEEEEec---CCCcEEEE
Confidence 568999999999999999999999999999999999998766543321 112343 35666554432 23457888
Q ss_pred E-EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769 245 E-QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 311 (554)
Q Consensus 245 ~-~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~ 311 (554)
. ...|+|..+.|.|+|++.++| |+|+|.++|+...+.+++..++.+.+...++..|++||++||+.
T Consensus 79 ~~~~~~p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~ 145 (146)
T cd08860 79 RRVETGPFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA 145 (146)
T ss_pred EEecCCCcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 4 335889999999999999775 99999999997644567788899999999999999999999974
No 6
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.76 E-value=1.5e-17 Score=147.69 Aligned_cols=125 Identities=34% Similarity=0.569 Sum_probs=102.8
Q ss_pred EcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE-EeccceeEEEEEEEEEEEEeecCCCeEEEEEEecCCc
Q 008769 174 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFD 252 (554)
Q Consensus 174 I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q-~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~veGdfr 252 (554)
|+||+++||++++||++||+|+|+|.+++++++.++++++.. ....+ ....|.++++ +.++..|.+.++.|+|+
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~g~~~ 75 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGG-IKRSWTSRVT----EDPPERIRFEQISGPFK 75 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTT-TCEEEEEEEE----EECTTTEEEESSETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCC-EEEEEEEEEE----EEEeeeeeeeecCCCch
Confidence 789999999999999999999999999999999888765543 33333 3355665543 34555599999999999
Q ss_pred eeEEEEEEEEcCC----CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 008769 253 SFQGKWLFEQLGS----HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 305 (554)
Q Consensus 253 ~f~G~W~Leplgd----G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR 305 (554)
.++|.|+|++.++ ..|+|+|.++++| ++++|..+++.++++.++.++++||
T Consensus 76 ~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 76 SFEGSWRFEPLGGNEGGTRTRVTYDYEVDP--PGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEETTECCEEEEEEEEEEEEET--SSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEEECCCCcCCCEEEEEEEEEEec--CcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999884 3578888888877 4679999999999999999999986
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.74 E-value=1.1e-16 Score=142.22 Aligned_cols=134 Identities=19% Similarity=0.296 Sum_probs=105.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCE-E-EEEE-EeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769 167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK-V-RILQ-EGCKGLLYMVLHARVVMDICEQHEQEIS 243 (554)
Q Consensus 167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~-v-rv~q-~g~~gil~~~~~~rvvLdv~E~~~rrIs 243 (554)
.++.++.|+|||++||++|+|+++||+|+|+|.+++++...++. . .... .+..++ ...++.++...++.+|.
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~ 77 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGI-----KDTYALEYTWDGAGSVS 77 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeE-----EEEEEEEEEEcCCCcEE
Confidence 57899999999999999999999999999999999998654432 2 1111 121111 11233344434467899
Q ss_pred EEEEecC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769 244 FEQVEGD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 308 (554)
Q Consensus 244 f~~veGd-fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA 308 (554)
|+..+|. +..+.|.|+|++.++ +|+|+|..++++. +++|.++++.+.+.....++++|+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 78 WTLVEGEGNRSQEGSYTLTPKGD-GTRVTFDLTVELT--VPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EEEecccceeEEEEEEEEEECCC-CEEEEEEEEEEec--CCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 9999876 668899999999987 6999999999984 579999999999999999999999864
No 8
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=99.73 E-value=3.5e-17 Score=151.72 Aligned_cols=142 Identities=19% Similarity=0.340 Sum_probs=123.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEE-EEeccceeEEEEEEEEEEEEeecCCC-eEE
Q 008769 166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQ-EIS 243 (554)
Q Consensus 166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~-q~g~~gil~~~~~~rvvLdv~E~~~r-rIs 243 (554)
.++..+..|+++|+++|+++.|++.||+|+|+|..++|+++.+..+... .++..++- .+|+++++++ ++. .|.
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~-e~F~Trv~~~----~~~~~I~ 76 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIR-ETFTTRVTLK----PTARSID 76 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhee-eeeeeeeeec----Cchhhhh
Confidence 4578899999999999999999999999999999999999988876543 35666643 5677776654 554 899
Q ss_pred EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 008769 244 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 314 (554)
Q Consensus 244 f~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~ 314 (554)
...++|+|+.+.|.|+|+|+++++|.|++.++|+++ ..|.+.++...+......+.+++.+||...++.
T Consensus 77 ~~l~~GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~--s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~~ 145 (146)
T COG2867 77 MKLIDGPFKYLKGGWQFTPLSEDACKVEFFLDFEFK--SRLLGALIGPVFKRLASKMVEAFEKRAKEVYGL 145 (146)
T ss_pred hhhhcCChhhhcCceEEEECCCCceEEEEEEEeeeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999998889999999999986 568888999999999999999999999988764
No 9
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.64 E-value=4.1e-15 Score=132.28 Aligned_cols=133 Identities=22% Similarity=0.299 Sum_probs=103.6
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 247 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v 247 (554)
|+.++.|+||+++||++++|+++||+|+|+|.+++++.+.+....+. ...+ ....+..+++ ...+++.|.|...
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~~v~---~~~~~~~i~~~~~ 75 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAK--GPAG-LSVEWDAEIT---EQVPNERIAWRSV 75 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEe--cCCC-CcEEEEEEEe---ccCCCCEEEEEEC
Confidence 67899999999999999999999999999999999986533322221 1112 2234444432 2246778999988
Q ss_pred ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch----HHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 248 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS----EAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 248 eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP----~~Lver~vre~l~~~L~ALR~rAE 309 (554)
.|.+ .+.|.|+|++.++++|+|+|+++++|.. +++ ..+++..+++.+...|+.||+.||
T Consensus 76 ~~~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 76 EGAD-PNAGSVRFRPAPGRGTRVTLTIEYEPPG--GAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CCCC-CcceEEEEEECCCCCeEEEEEEEEECCc--chhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 8887 8899999999887789999999999852 333 356889999999999999999987
No 10
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.63 E-value=2.6e-14 Score=136.67 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=120.1
Q ss_pred CceeecccccCCCCcccceEEEeeeccccccCCc-eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC
Q 008769 131 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGV-HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 209 (554)
Q Consensus 131 ~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~-~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~ 209 (554)
+|++.++.+|+ +||.+ ++.++ .+.++++++|++|+++||+++.|++.||+|.|+|.+++++++.++
T Consensus 18 ~W~~~~~~~~v-------~v~~~------~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~ 84 (195)
T cd08876 18 DWQLVKDKDGI-------KVYTR------DVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDD 84 (195)
T ss_pred CCEEEecCCCe-------EEEEE------ECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCC
Confidence 69999999999 99999 44333 588999999999999999999999999999999999999998665
Q ss_pred -EEEEEEEeccce-e-EEEEEEEEEEEEeecCCCeEEEEEEec----C-------CceeEEEEEEEEcCCCeEEEEEEEE
Q 008769 210 -KVRILQEGCKGL-L-YMVLHARVVMDICEQHEQEISFEQVEG----D-------FDSFQGKWLFEQLGSHHTLLKYSVE 275 (554)
Q Consensus 210 -~vrv~q~g~~gi-l-~~~~~~rvvLdv~E~~~rrIsf~~veG----d-------fr~f~G~W~LeplgdG~TrVtY~v~ 275 (554)
...++..-.... + ..-|........ ...+..+.+...++ + +..+.|.|.|++.++++|+|+|..+
T Consensus 85 ~~~i~~~~~~~p~pvs~Rdfv~~~~~~~-~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~ 163 (195)
T cd08876 85 NERSVYTVIDLPWPVKDRDMVLRSTTEQ-DADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAY 163 (195)
T ss_pred CcEEEEEEEecccccCCceEEEEEEEEE-cCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEE
Confidence 333333211110 0 011111111111 11133333333322 1 4578899999999888999999999
Q ss_pred EEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769 276 SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 308 (554)
Q Consensus 276 ~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA 308 (554)
++|+ +++|.++++.+++..+..++++|+++|
T Consensus 164 ~dp~--g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 164 ADPG--GSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred eCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9994 689999999999999999999999987
No 11
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=7.4e-14 Score=123.00 Aligned_cols=136 Identities=19% Similarity=0.321 Sum_probs=100.2
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC----EEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN----KVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 243 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~----~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs 243 (554)
|+.++.|+||+++||++|+|+++|++|+|.+..++++...+. .... .....+. .+.+..+++ ...+++.+.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~-~~~~~g~-~~~~~~~v~---~~~p~~~~~ 75 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQ-VRKFLGR-RIELTYEIT---EYEPGRRVV 75 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEE-EEEecCc-eEEEEEEEE---EecCCcEEE
Confidence 467899999999999999999999999999999998864322 2222 2222221 123333322 124778999
Q ss_pred EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 244 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 244 f~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
|....|++. +.+.|+|++.++ +|+|+|+.++++.+...+...++...++..+...|++|++++|+
T Consensus 76 ~~~~~~~~~-~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 76 FRGSSGPFP-YEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred EEecCCCcc-eEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 998777664 699999999876 69999999998732122345578889999999999999999874
No 12
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.57 E-value=6.7e-13 Score=117.28 Aligned_cols=137 Identities=21% Similarity=0.353 Sum_probs=104.1
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEE-EEEEEeccceeEEEEEEEEEEEEeecC-CCeE
Q 008769 165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLHARVVMDICEQH-EQEI 242 (554)
Q Consensus 165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~v-rv~q~g~~gil~~~~~~rvvLdv~E~~-~rrI 242 (554)
|..++.++.|+|||++||++|+|++++++|.|.+..++++...+... ..... .+. ..++.+++ + . .+ ++.+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~g~--~~~~~~i~-~-~-~~~~~~~ 73 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRV--AGR--GTVREEIT-E-Y-DPEPRRI 73 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEE--CSC--SEEEEEEE-E-E-ETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEe--ccc--cceeEEEE-E-e-cCCCcEE
Confidence 45789999999999999999999999999999999999987444433 22221 121 12222221 2 2 24 7899
Q ss_pred EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 243 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 243 sf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
.|+.....+..+.+.|+|++.++| |+|+++.++++...+++...++...+...+...|++|++.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 74 TWRFVPSGFTNGTGRWRFEPVGDG-TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEEEESSSSCEEEEEEEEEEETTT-EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecceeEEEEEEEEEEcCCC-EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999865555678999999999976 999999999963335567778899999999999999999987
No 13
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.56 E-value=1.8e-13 Score=120.83 Aligned_cols=133 Identities=19% Similarity=0.328 Sum_probs=103.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC--CEEE-EEEEeccceeEEEEEEEEEEEEeecCC-CeE
Q 008769 167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVR-ILQEGCKGLLYMVLHARVVMDICEQHE-QEI 242 (554)
Q Consensus 167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g--~~vr-v~q~g~~gil~~~~~~rvvLdv~E~~~-rrI 242 (554)
.|+.+++|+||+++||++++|+++|+.|+|.+.+++++...+ +..+ +... .+ ..+..+++ + ..++ ++|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~--~g---~~~~~~i~-~--~~~~~~~i 73 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLK--DG---GTVRERLL-A--LDDAERRY 73 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeC--CC---CEEEEEeh-h--cCccCCEE
Confidence 478899999999999999999999999999999999986542 2222 2222 11 12222221 1 1345 899
Q ss_pred EEEEEec--CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 243 SFEQVEG--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 243 sf~~veG--dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
.|++..| ++..+.+.|+|++.++++|+|+|+..+++. +.++.++++..+.+.+...|++|+++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 74 SYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPP--EGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EEEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecC--CCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999875 345789999999998878999999999985 3378889999999999999999999875
No 14
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.54 E-value=2.6e-13 Score=123.38 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=99.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe------cCCEEEEEEEeccceeEEEEEEEEEEEEeecCC
Q 008769 166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR------ENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 239 (554)
Q Consensus 166 r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r------~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~ 239 (554)
..++.++.|+||+++||++++|+++||+|+|+|..+..+.. .+.+.++...+........+ ++ ....++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~v---~~~~p~ 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM--EI---TESVPN 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE--EE---EecCCC
Confidence 35889999999999999999999999999999987654432 11122222222221100111 11 112467
Q ss_pred CeEEEEEEe-cCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc--chHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 240 QEISFEQVE-GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 240 rrIsf~~ve-Gdfr-~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~--LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
+++.|+... |++. .+.+.|+|++.++ +|+|+|.+++++.++.+ +...++.+.+++++...|++||+++|+
T Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 77 ERIEYELRFIKPFEATNDVEFTLEPVGG-GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred cEEEEEEEecCCccccceEEEEEEEcCC-ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999885 7775 7899999999954 69999999998642211 345668999999999999999999885
No 15
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.54 E-value=3.1e-13 Score=120.67 Aligned_cols=137 Identities=13% Similarity=0.231 Sum_probs=99.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEE-eccceeEEEEEEEEEEEEee-cCCCeEEE
Q 008769 167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICE-QHEQEISF 244 (554)
Q Consensus 167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~-g~~gil~~~~~~rvvLdv~E-~~~rrIsf 244 (554)
+++.++.|+|||++||++|+|+++|++|+|+|.+++++.. +...+... +. +.+...+.... .+.+ .++.++.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 76 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP--NEYEATVKLKV-GPVKGTFKGKV--ELSDLDPPESYTI 76 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC--CeEEEEEEEEE-ccEEEEEEEEE--EEEecCCCcEEEE
Confidence 4788999999999999999999999999999999988753 33322221 22 21212333222 2333 34577877
Q ss_pred EEEe-cC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 245 EQVE-GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 245 ~~ve-Gd--fr~f~G~W~LeplgdG~TrVtY~v~~eP~~g-g~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
.... |. +..+.+.|+|++. +++|+|+|++++++.+. ..++.++++..+++.+...+++||++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 77 TGEGKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred EEEEcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7653 22 5588999999998 56799999999997521 1247888999999999999999998863
No 16
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.51 E-value=8.3e-13 Score=117.31 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=99.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEec-CCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEE
Q 008769 167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 245 (554)
Q Consensus 167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~-g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~ 245 (554)
+++.++.|+||++.||++++|+++||+|+|+|..++++... +.+.+....+..+ ..+...++ + ..+++++.|.
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~-~--~~p~~~~~~~ 75 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVT-E--LRPGHSFTWT 75 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEE-E--ecCCCEEEEE
Confidence 47889999999999999999999999999999999998654 2222222222112 12222221 2 2467889998
Q ss_pred EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 246 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 246 ~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
... +.....++|+|++.++++|+|+|+.++.... ..+...++.+.++..+...|++||+.+|.
T Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 76 GPA-PGISAVHRHEFEAKPDGGVRVTTSESLSGPL-AFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred ecC-CCEEEEEEEEEEEcCCCcEEEEEEEEeecch-HHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 654 3345578999999876789999998887421 23446678999999999999999999873
No 17
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=1.5e-12 Score=119.32 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=94.5
Q ss_pred EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe-cCCE--EEE--EEEeccceeEEEEEEEEEEEEee-cCCC
Q 008769 167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-ENNK--VRI--LQEGCKGLLYMVLHARVVMDICE-QHEQ 240 (554)
Q Consensus 167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r-~g~~--vrv--~q~g~~gil~~~~~~rvvLdv~E-~~~r 240 (554)
++..+..|+||+++||++++|+++||+|+|+|.+++++.. .+.+ .+. ...+..+. ...+..+ +++ .+++
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~----v~~~~p~~ 76 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPY-RLRFELR----VTRIEPLS 76 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCc-EEEEEEE----EEeecCCc
Confidence 4567788999999999999999999999999999999873 2221 122 11222221 1223332 333 4778
Q ss_pred eEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEecc-----CccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769 241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-----NSLLSEAIMEEVIYEDLPSNLCAIRDY 307 (554)
Q Consensus 241 rIsf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~-----gg~LP~~Lver~vre~l~~~L~ALR~r 307 (554)
.+.|. ..|++.. .++|+|++.++ +|+|+|+.++++.+ -.+++..++...+++.++.++++||++
T Consensus 77 ~~~~~-~~g~~~~-~~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 77 LLEVR-ASGDLEG-VGRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEEE-EEEeeeE-EEEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 99997 4687765 89999999765 69999999999631 113556667788888888888888875
No 18
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.47 E-value=1e-12 Score=129.30 Aligned_cols=164 Identities=8% Similarity=0.068 Sum_probs=114.6
Q ss_pred CCceeeccc-ccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHH-HHHhCcCcccccCcCCcEEEEEEec
Q 008769 130 SKWGVFGQV-CRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE 207 (554)
Q Consensus 130 ~~W~~~~~~-~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VW-aVLTDyE~yPewiP~V~sSrVL~r~ 207 (554)
++|++.++. +|| .||.+ ++.+....++++++|++|++++| ++|.|.+.+++|+++|.+++++++-
T Consensus 25 ~~W~l~~~~~~gi-------~V~s~------~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~ 91 (209)
T cd08906 25 ENWKFEKNNDNGD-------TVYTL------EVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRV 91 (209)
T ss_pred cCCEEEEecCCCC-------EEEEe------ccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeec
Confidence 589999876 999 99998 45444477899999999999998 6999999999999999999999885
Q ss_pred CC-EEEEEEEeccc----eeEEEEEEEEEEEEeecCCCeEEEE-E--------EecCCc---eeEEEEEEEE-cCCCeEE
Q 008769 208 NN-KVRILQEGCKG----LLYMVLHARVVMDICEQHEQEISFE-Q--------VEGDFD---SFQGKWLFEQ-LGSHHTL 269 (554)
Q Consensus 208 g~-~vrv~q~g~~g----il~~~~~~rvvLdv~E~~~rrIsf~-~--------veGdfr---~f~G~W~Lep-lgdG~Tr 269 (554)
+. ...++...... +-..-|...... ....+..+... . .+|.++ .+.|.|.+.+ .+++.|+
T Consensus 92 ~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~--~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~ 169 (209)
T cd08906 92 DDNTLVSYDVAAGAAGGVVSPRDFVNVRRI--ERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCT 169 (209)
T ss_pred cCCcEEEEEEccccccCCCCCCceEEEEEE--EecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceE
Confidence 43 32233321100 000001110000 00111122111 1 112222 4577888775 6777899
Q ss_pred EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 270 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 270 VtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
|+|.++++|+ |.||.+++|.++.+.+..++.+||++++.
T Consensus 170 vt~~~~~Dp~--G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 170 FIWILNTDLK--GRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999995 68999999999999999999999999864
No 19
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=1.1e-11 Score=109.59 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=99.9
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEE-EecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKIL-SRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 246 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL-~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~ 246 (554)
|+.++.|+||+++||++++|+++++.|+|.+..++.. ...|.+.........+.. ..+...++ + ..++++|.|..
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~v~-~--~~p~~~~~~~~ 77 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPP-RSFKPRVT-E--VEPPRRLAWRG 77 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCc-EEEEEEEE-E--EcCCCEeEEEe
Confidence 6789999999999999999999999999999888776 345555544433222111 22333321 2 24678999998
Q ss_pred EecCCc--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 247 VEGDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 247 veGdfr--~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
..++.. ...+.|+|++.++++|+|++...+... ...+...++...+.+++...+++|+..||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 78 GLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGL-LAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred cCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEE-EhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 776533 467899999986678999998776532 12344556889999999999999999876
No 20
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.37 E-value=1.6e-11 Score=120.30 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=120.1
Q ss_pred CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769 129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 208 (554)
Q Consensus 129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g 208 (554)
..+|++.++.+|| +||.|... ++..+.++++..|++|++.+.++|.|.+.|++|+|.|.+++++...+
T Consensus 21 ~~~W~~~~~~~~i-------~v~~r~~~-----~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~ 88 (215)
T cd08877 21 SDGWTLQKESEGI-------RVYYKFEP-----DGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLG 88 (215)
T ss_pred CCCcEEeccCCCe-------EEEEEeCC-----CCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecC
Confidence 3589999999999 99999422 33389999999999999999999999999999999999999987754
Q ss_pred CE-EEEEEEeccceeEEEEEEE-EEE-----EEeecCCCeE--EEEE-----------------Ee-cCC--ceeEEEEE
Q 008769 209 NK-VRILQEGCKGLLYMVLHAR-VVM-----DICEQHEQEI--SFEQ-----------------VE-GDF--DSFQGKWL 259 (554)
Q Consensus 209 ~~-vrv~q~g~~gil~~~~~~r-vvL-----dv~E~~~rrI--sf~~-----------------ve-Gdf--r~f~G~W~ 259 (554)
.. ..++.. .. ++|.+..| .++ +..+ .+..+ .... .+ |.. ..+.|.|.
T Consensus 89 ~~~~v~y~~-~~--~PwPv~~RD~v~~~~~~~~~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~ 164 (215)
T cd08877 89 RADKVCYLR-VD--LPWPLSNREAVFRGFGVDRLE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFV 164 (215)
T ss_pred CceEEEEEE-Ee--CceEecceEEEEEEEEEeeec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEE
Confidence 32 222321 11 11111111 110 1010 12222 1111 12 222 26789999
Q ss_pred EEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 260 FEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 260 LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
|+|++++.|.++|.++++|+ +.++|.++++.+.+..+..++.+|++.|++
T Consensus 165 i~p~~~~~t~v~~~~~~DP~-g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 165 ITPISPTKCYLRFVANVDPK-MSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred EEEcCCCCeEEEEEEEcCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999995 345999999999999999999999999875
No 21
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.37 E-value=6.6e-12 Score=123.35 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=115.6
Q ss_pred CCceeec-ccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHH-HHHhCcCcccccCcCCcEEEEEEec
Q 008769 130 SKWGVFG-QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE 207 (554)
Q Consensus 130 ~~W~~~~-~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VW-aVLTDyE~yPewiP~V~sSrVL~r~ 207 (554)
++|++.+ +.+|| .||.+..+ +..+.++++..|++|++.|+ .++.|++++++|+++|.+++++++-
T Consensus 25 ~~W~~~~~~~~gi-------~v~s~~~~------~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~i 91 (209)
T cd08905 25 EGWKTEIVAENGD-------KVLSKVVP------DIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRI 91 (209)
T ss_pred cCCEEEEecCCCC-------EEEEEEcC------CCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhc
Confidence 4899996 58999 99998433 32277889999999999999 8888999999999999999999875
Q ss_pred CC-EEEEEEEeccc----eeEEEEEEEEEEEEeecCCCeEEE-EE--------EecCCc--eeEEEEEEEEcCC--CeEE
Q 008769 208 NN-KVRILQEGCKG----LLYMVLHARVVMDICEQHEQEISF-EQ--------VEGDFD--SFQGKWLFEQLGS--HHTL 269 (554)
Q Consensus 208 g~-~vrv~q~g~~g----il~~~~~~rvvLdv~E~~~rrIsf-~~--------veGdfr--~f~G~W~Leplgd--G~Tr 269 (554)
+. ...+++..... +-..-|...... ....+..+.. .. .+|.++ ...|.|.|+|+++ +.|+
T Consensus 92 d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~--~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~ 169 (209)
T cd08905 92 GKDTLITHEVAAETAGNVVGPRDFVSVRCA--KRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTK 169 (209)
T ss_pred CCCceEEEEEeccCCCCccCccceEEEEEE--EEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceE
Confidence 43 33334321110 000001110000 0011111111 11 123333 5689999999965 7899
Q ss_pred EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 270 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 270 VtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
|+|.+.++|+ |.||.++++.++.+.+..+|.+||++++
T Consensus 170 v~~~~~~Dpk--G~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 170 LTWLLSIDLK--GWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EEEEEeecCC--CCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 9999999995 6799999999999999999999999986
No 22
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.35 E-value=2.1e-11 Score=120.08 Aligned_cols=165 Identities=11% Similarity=0.124 Sum_probs=112.9
Q ss_pred ccCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe
Q 008769 127 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR 206 (554)
Q Consensus 127 ~~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r 206 (554)
+..++|++.++.+|| .||.+ ++++....+.++++|++|+++||++|.|.+++++|.+.+.+++++++
T Consensus 19 ~~~~gW~l~~~~~gI-------~Vy~k------~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~ 85 (205)
T cd08874 19 QATAGWSYQCLEKDV-------VIYYK------VFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKT 85 (205)
T ss_pred hccCCcEEEecCCCE-------EEEEe------cCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeee
Confidence 345699999999999 99999 55566677889999999999999999999999999999999999988
Q ss_pred cCCEEE-EEEEeccce----eEEEEEEEEEEEEeecCCCeEEEEEEe---------cCCc--eeEEEEEEEEc---CCCe
Q 008769 207 ENNKVR-ILQEGCKGL----LYMVLHARVVMDICEQHEQEISFEQVE---------GDFD--SFQGKWLFEQL---GSHH 267 (554)
Q Consensus 207 ~g~~vr-v~q~g~~gi----l~~~~~~rvvLdv~E~~~rrIsf~~ve---------Gdfr--~f~G~W~Lepl---gdG~ 267 (554)
.++... ++++--... -..-|....+. ..+....-|..+.++ |.++ .+.|.|.++|+ +++.
T Consensus 86 ~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~-~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~ 164 (205)
T cd08874 86 FTEDICLVYLVHETPLCLLKQPRDFCCLQVE-AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQY 164 (205)
T ss_pred cCCCeEEEEEEecCCCCCCCCCCeEEEEEEE-EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCc
Confidence 554433 333211010 00011111110 001111112222222 2222 67899999999 8889
Q ss_pred EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769 268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 307 (554)
Q Consensus 268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r 307 (554)
|+|+|..+++|+ |+-+|.+++|.++.+.... +..|+..
T Consensus 165 t~vty~~q~DPg-gg~iP~~l~N~~~~~~p~~-~~~~~~~ 202 (205)
T cd08874 165 TRVIYIAQVALC-GPDVPAQLLSSLSKRQPLV-IARLALF 202 (205)
T ss_pred EEEEEEEEECCC-CCCCCHHHHhHHHHhccHH-HHHHHHH
Confidence 999999999995 2569999999998876543 3334443
No 23
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.34 E-value=3.8e-11 Score=108.81 Aligned_cols=106 Identities=23% Similarity=0.328 Sum_probs=81.6
Q ss_pred EEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCE----EEE-EEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769 169 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK----VRI-LQEGCKGLLYMVLHARVVMDICEQHEQEIS 243 (554)
Q Consensus 169 ~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~----vrv-~q~g~~gil~~~~~~rvvLdv~E~~~rrIs 243 (554)
+.++.|+||+++||++++|.+++|+|+|.+.+++++...++. .++ +.....++ .+.|+++++ ...+++.+.
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~-~~~w~~~it---~~~p~~~f~ 77 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGI-PQRWTTEIT---EVEPPRRFV 77 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCC-ceEEEEEEE---EEcCCCeEE
Confidence 578999999999999999999999999999999998654322 111 22222222 245655543 224678999
Q ss_pred EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEec
Q 008769 244 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ 279 (554)
Q Consensus 244 f~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~ 279 (554)
+.++.|++..++++|+|++.++ +|+|++.+++++.
T Consensus 78 ~~~~~G~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 78 DEQVSGPFRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEeccCCchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 9999999998999999999876 6999999999973
No 24
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.33 E-value=4.4e-11 Score=109.55 Aligned_cols=134 Identities=11% Similarity=0.152 Sum_probs=91.1
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEE-EEeccceeEEEEEEEEEEEEeec--CCCeEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQ--HEQEISF 244 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~-q~g~~gil~~~~~~rvvLdv~E~--~~rrIsf 244 (554)
|+.++.|+|||+.||++|+|+++|+.|+|.|...+++. ++..... .....+ +...+..++ .+.+. +++++.+
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~--~~~~~~~~~~~~~~ 75 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGP-ISASFKGTA--RLLEDDEAARRAVL 75 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEcc-EEEEEEEEE--EEEeccCCCcEEEE
Confidence 35688999999999999999999999999999988753 2333221 112222 223444333 33332 5678877
Q ss_pred EEEecCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHH---HHHHHHHhhHHHHHHHHHHHHH
Q 008769 245 EQVEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA---IMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 245 ~~veGdfr-----~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~---Lver~vre~l~~~L~ALR~rAE 309 (554)
.....+.. ....+|+|++ .+++|+|+|.+++++. ++++.. ++++..++.+...+++|++++|
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~--g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 76 EATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALT--GKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEe--eEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 64321111 3566899998 4468999999998874 455443 4777888888888888888876
No 25
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.32 E-value=6.6e-11 Score=115.46 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=115.3
Q ss_pred Cceeecccc-cCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHH-HHhCcCcccccCcCCcEEEEEEecC
Q 008769 131 KWGVFGQVC-RLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSREN 208 (554)
Q Consensus 131 ~W~~~~~~~-gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWa-VLTDyE~yPewiP~V~sSrVL~r~g 208 (554)
+|++.++.+ || .||.|.. .+..+.++++.+|++|+++|+. ++.|++..++|.+.|.+++++++-+
T Consensus 25 ~W~l~~~~~~~i-------~i~~r~~------~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d 91 (208)
T cd08868 25 GWKLEKNTTWGD-------VVYSRNV------PGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVID 91 (208)
T ss_pred CceEEEecCCCC-------EEEEEEc------CCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEec
Confidence 899999998 99 9999943 3333678999999999999985 7789999999999999999998754
Q ss_pred CE-EEEEEEeccceeEEEEEEE--EEEEEeecCCCe--EEEEEEe--------cCCc--eeEEEEEEEEcCC--CeEEEE
Q 008769 209 NK-VRILQEGCKGLLYMVLHAR--VVMDICEQHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLGS--HHTLLK 271 (554)
Q Consensus 209 ~~-vrv~q~g~~gil~~~~~~r--vvLdv~E~~~rr--Isf~~ve--------Gdfr--~f~G~W~Leplgd--G~TrVt 271 (554)
+. ..++...... ..+....| +.+......+.. |....++ |.++ .+.|.|.|+|+++ ++|.|+
T Consensus 92 ~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~ 170 (208)
T cd08868 92 DNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFT 170 (208)
T ss_pred CCcEEEEEEecCc-CCCcccccceEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEE
Confidence 43 2334321110 00000000 000000011111 2222222 3233 5679999999864 679999
Q ss_pred EEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 272 YSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 272 Y~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
|.++.+|+ |++|.++++..+...+..++.+||++++.
T Consensus 171 ~~~~~Dp~--G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 171 WLLNTDLK--GWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEECCC--CCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 99999994 78999999999999999999999999875
No 26
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.32 E-value=5.7e-11 Score=105.44 Aligned_cols=135 Identities=17% Similarity=0.133 Sum_probs=97.1
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 247 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v 247 (554)
|..+++|+||+++||++|+|++++|.|+|.+..+.+....|+.......+..+.. ..+..+++ ...++++|.|+..
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~-~~~~~~i~---~~~~~~~i~~~~~ 77 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEE-GWVSGEVL---EVEPPRRLVFTWA 77 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCE-EeccEEEE---EEcCCCeEEEEec
Confidence 6788999999999999999999999999985555555455554433333222211 12222221 2246789999988
Q ss_pred ecC---CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 248 EGD---FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 248 eGd---fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
.++ +......|+|++.+ ++|+|+|..++.+.. .+...+...++.....+|..||+.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 78 FSDETPGPETTVTVTLEETG-GGTRLTLTHSGFPEE---DAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred ccCCCCCCceEEEEEEEECC-CCEEEEEEEEccChH---hHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 763 45778999999998 469999999887631 234467778888999999999999884
No 27
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=1.2e-10 Score=99.22 Aligned_cols=136 Identities=24% Similarity=0.318 Sum_probs=95.1
Q ss_pred EEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEE-eccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769 169 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQV 247 (554)
Q Consensus 169 ~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~-g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v 247 (554)
+.++.|+||+++||++++|+++|+.|+|.+..++++............ .........+..+++ ...++..+.|...
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~ 78 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVT---EVDPPRPGRFRVT 78 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCccccceEEEE---EecCCCceEEEEe
Confidence 578899999999999999999999999999999988754432221111 110001112222222 1134568888888
Q ss_pred ecCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHH
Q 008769 248 EGDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDY 307 (554)
Q Consensus 248 eGdfr-~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~-LP~~Lver~vre~l~~~L~ALR~r 307 (554)
.+++. .+.+.|.|++.++++|+|++.+.+.+..... ++..++.+.++..+...+.+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 79 GGGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred cCCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 77665 7899999999886579999999999753211 356677888888888888777654
No 28
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.30 E-value=1.5e-10 Score=114.13 Aligned_cols=161 Identities=13% Similarity=0.105 Sum_probs=118.0
Q ss_pred CCceeecccccCCCCcccceEEEeeeccccccC-CceEEEEEEEEE-cCCHHHHHHHHhCcCcccccCcCCcEEEEEEec
Q 008769 130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENG-GVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSRE 207 (554)
Q Consensus 130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~-g~~r~V~asI~I-~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~ 207 (554)
.+|++..+.+|| .||.| .+. ++...++++.+| ++|+++++++|.|.+..++|.+.|.++++++.-
T Consensus 23 ~~W~~~~~~~gi-------~iy~r------~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~ 89 (222)
T cd08871 23 DGWKLKYNKNNV-------KVWTK------NPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQL 89 (222)
T ss_pred CCcEEEEcCCCe-------EEEEe------eCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEc
Confidence 489999999999 99999 343 457788898887 699999999999999999999999999999874
Q ss_pred CC--EEEEEEE-------eccceeEEEEEEEEEEEEeecCCC-eEEEEEE--------ecCCc--eeEEEEEEEEcCCCe
Q 008769 208 NN--KVRILQE-------GCKGLLYMVLHARVVMDICEQHEQ-EISFEQV--------EGDFD--SFQGKWLFEQLGSHH 267 (554)
Q Consensus 208 g~--~vrv~q~-------g~~gil~~~~~~rvvLdv~E~~~r-rIsf~~v--------eGdfr--~f~G~W~LeplgdG~ 267 (554)
+. .+..+.. +++.++ ... . ...++. .+....+ .|.++ .+.+.|.|++.++++
T Consensus 90 d~~~~i~y~~~~~P~pvs~RDfV~----~r~-~---~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~ 161 (222)
T cd08871 90 NPNNDIGYYSAKCPKPLKNRDFVN----LRS-W---LEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKG 161 (222)
T ss_pred CCCCEEEEEEeECCCCCCCCeEEE----EEE-E---EeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCC
Confidence 43 2222211 111111 000 0 001111 1111111 23333 457889999998888
Q ss_pred EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 008769 268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 313 (554)
Q Consensus 268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~ 313 (554)
|.|+|..+.+|+ |++|.++++.++....+.+|++|++.++++..
T Consensus 162 t~vt~~~~~Dp~--G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 162 CTLTYVTQNDPK--GSLPKWVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred EEEEEEEecCCC--CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999994 78999999999999999999999999998744
No 29
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.28 E-value=1.2e-10 Score=114.24 Aligned_cols=159 Identities=13% Similarity=0.031 Sum_probs=116.4
Q ss_pred CCceeecccccCCCCcccceEEEeeeccccccC-CceEEEEEEEEE-cCCHHHHHHHHhCcCcccccCcCCcEEEEEEec
Q 008769 130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENG-GVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSRE 207 (554)
Q Consensus 130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~-g~~r~V~asI~I-~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~ 207 (554)
++|.+..+.+|| .||.| ++. .+...+++..++ ++|++++++++.|.+..++|.+.|.+.+++++.
T Consensus 21 ~~W~l~~~~~~i-------~Vy~r------~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~ 87 (207)
T cd08911 21 DGWEPFIEKKDM-------LVWRR------EHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDED 87 (207)
T ss_pred CCcEEEEEcCce-------EEEEe------ccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEcc
Confidence 479999999999 99999 343 446678887767 999999999999999999999999999999874
Q ss_pred C--CEEEEEEE--------eccceeEEEEEEEEEEEEeecCCCe--EEEEEEe--------cCCc--eeEEEEEEEEcC-
Q 008769 208 N--NKVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLG- 264 (554)
Q Consensus 208 g--~~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~rr--Isf~~ve--------Gdfr--~f~G~W~Leplg- 264 (554)
. +...++.. .++.+ +..++ ... ..... |....++ |.++ .+.|.|.++|.+
T Consensus 88 ~~~~~~i~y~~~~~P~P~s~RD~V----~~r~~--~~~-~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~ 160 (207)
T cd08911 88 PETGSEIIYWEMQWPKPFANRDYV----YVRRY--IID-EENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKS 160 (207)
T ss_pred CCCCCEEEEEEEECCCCCCCccEE----EEEEE--EEc-CCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCC
Confidence 2 22223332 11111 11111 111 11112 2222222 3333 789999999983
Q ss_pred --CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 265 --SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 265 --dG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
+++|.++|..+.+| +|.||.+++|.+....++..|+.|+..+.+
T Consensus 161 ~~~~~~~~~~~~~~dP--gG~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 161 FDEPGFEFVLTYFDNP--GVNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred CCCCCeEEEEEEEeCC--CCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 56799999999998 478999999999999999999999998865
No 30
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.23 E-value=7e-10 Score=108.98 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=113.7
Q ss_pred CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcc--cccCcCCcEEEEEEec
Q 008769 130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETL--PEIVPNLAISKILSRE 207 (554)
Q Consensus 130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~y--PewiP~V~sSrVL~r~ 207 (554)
++|++.++.+|| +||.|.+. ++.+.. ++++.+|++++++|+++|.|.+++ ++|.+.|.+++++++-
T Consensus 22 ~~W~~~~~~~~i-------~v~~~~~~---~~~~~~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~i 89 (208)
T cd08903 22 SGWKTCRRTNEV-------AVSWRPSA---EFAGNL--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAI 89 (208)
T ss_pred cCCEEEEcCCCE-------EEEeeecC---CCCCcE--EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEe
Confidence 589999999999 99999543 234433 779999999999999999999887 9999999999999885
Q ss_pred CCEE-EEEEEe-cc--c-eeEEEEEEEEEEEEeecCCCeEEE--EEEe--------cCCce----eEEEEEEEEcCCCeE
Q 008769 208 NNKV-RILQEG-CK--G-LLYMVLHARVVMDICEQHEQEISF--EQVE--------GDFDS----FQGKWLFEQLGSHHT 268 (554)
Q Consensus 208 g~~v-rv~q~g-~~--g-il~~~~~~rvvLdv~E~~~rrIsf--~~ve--------Gdfr~----f~G~W~LeplgdG~T 268 (554)
++.. .++... .. + +-..-|....... ...+..+.. ..++ |.++. ..|.|...+.++++|
T Consensus 90 d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~--~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t 167 (208)
T cd08903 90 SDDVSVCRTVTPSAAMKIISPRDFVDVVLVK--RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKT 167 (208)
T ss_pred cCCEEEEEEecchhcCCCcCCCceEEEEEEE--ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCce
Confidence 5433 333311 00 0 0000011100000 112222322 2222 22232 456666666566789
Q ss_pred EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 269 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 269 rVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
.|+|.+.++|+ |.||.++++.++.+.+..++.+||+.+..
T Consensus 168 ~v~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 168 QLVSFFQTDLS--GYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEEEEEeccC--CCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 99999999995 78999999999999999999999998753
No 31
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.21 E-value=3e-10 Score=102.39 Aligned_cols=135 Identities=18% Similarity=0.195 Sum_probs=88.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEE-----ecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769 167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-----RENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 241 (554)
Q Consensus 167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~-----r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr 241 (554)
+|+.++.|+|||+.||++++|+++||+|+|......+.. +.|+......... +. .+.+..+++ + ..++++
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-g~-~~~~~~~v~-~--~~p~~~ 75 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLD-GG-PYRITNHVV-A--FEENRL 75 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcC-CC-ceEEEEEEE-E--ECCCCE
Confidence 378899999999999999999999999998643322221 2334333333221 21 234444332 2 257889
Q ss_pred EEEEEEe-c-CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHH
Q 008769 242 ISFEQVE-G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 242 Isf~~ve-G-dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~L--ver~vre~l~~~L~ALR~rAE 309 (554)
|.|+... + .......+|+|++.++++|+|++...+.... .+..+ +......++...|..|++.+|
T Consensus 76 l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~---~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 76 IAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAVT---DLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCCh---hhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 9998642 2 2235577889999887789999998876421 22222 234567888899999988775
No 32
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.20 E-value=9.8e-10 Score=107.67 Aligned_cols=158 Identities=7% Similarity=0.040 Sum_probs=116.3
Q ss_pred CCceeeccccc----CCCCcccceEEEeeeccccccC-CceEEEEEEEEE-cCCHHHHHHHHhCcCcccccCcCCcEEEE
Q 008769 130 SKWGVFGQVCR----LDRPCFVDEVHLRRFDGLLENG-GVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKI 203 (554)
Q Consensus 130 ~~W~~~~~~~g----i~~~~~~deV~lrr~d~~~e~~-g~~r~V~asI~I-~APpe~VWaVLTDyE~yPewiP~V~sSrV 203 (554)
..|+...+.+| | +||.|. .. .+...+++..++ ++|+++|++++.|.+..++|.+.|.+.++
T Consensus 22 ~~W~~~~~k~~~~~~i-------~vy~r~------~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~ 88 (209)
T cd08870 22 QAWQQVMDKSTPDMSY-------QAWRRK------PKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHET 88 (209)
T ss_pred CcceEhhhccCCCceE-------EEEecc------cCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEE
Confidence 58999999999 9 999993 33 446789999999 56999999999999999999999999999
Q ss_pred EEecCC--EEEEEEE--------eccceeEEEEEEEEEEEEeecCCCe--EEEEEEe-------cCCc--eeEEEEEEEE
Q 008769 204 LSRENN--KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE-------GDFD--SFQGKWLFEQ 262 (554)
Q Consensus 204 L~r~g~--~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~rr--Isf~~ve-------Gdfr--~f~G~W~Lep 262 (554)
++..++ .-.++.. .++.++...+ ....+.. |....++ |.++ .+.|.|.++|
T Consensus 89 le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~--------~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p 160 (209)
T cd08870 89 LEEDEKSGTEIVRWVKKFPFPLSDREYVIARRL--------WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRA 160 (209)
T ss_pred EEecCCCCcEEEEEEEECCCcCCCceEEEEEEE--------EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEE
Confidence 988654 2222321 1111111000 0111111 1111111 2322 7899999999
Q ss_pred c--CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 263 L--GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 263 l--gdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
. ++++|.++|....+| +|.||.+++|.++...++.+|+.|+..+.+
T Consensus 161 ~~~~~~~t~~~~~~~~dp--~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 161 VKGDGQGSACEVTYFHNP--DGGIPRELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred ecCCCCceEEEEEEEECC--CCCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8 778899999999998 467999999999999999999999998854
No 33
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.20 E-value=3.8e-10 Score=109.90 Aligned_cols=164 Identities=16% Similarity=0.097 Sum_probs=112.0
Q ss_pred ccCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe
Q 008769 127 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR 206 (554)
Q Consensus 127 ~~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r 206 (554)
+..++|.+..+.+|| +||.|..+ .+...+.+++++.|+|++++|++++.|. -++|.++|.+++++++
T Consensus 16 ~~~~~W~~~~~~~gi-------~I~~k~~~----~~~~l~~~K~~~~v~a~~~~v~~~l~d~--r~~Wd~~~~~~~vie~ 82 (197)
T cd08869 16 DKSKGWVSVSSSDHV-------ELAFKKVD----DGHPLRLWRASTEVEAPPEEVLQRILRE--RHLWDDDLLQWKVVET 82 (197)
T ss_pred hccCCceEEecCCcE-------EEEEEeCC----CCCcEEEEEEEEEeCCCHHHHHHHHHHH--HhccchhhheEEEEEE
Confidence 445799999999999 99999432 1224677899999999999999999886 3999999999999988
Q ss_pred cCC-EEEEEEE-ecc-ceeEEEEEEEEEEEEeecCCC--eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769 207 ENN-KVRILQE-GCK-GLLYMVLHARVVMDICEQHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSHHTLLKY 272 (554)
Q Consensus 207 ~g~-~vrv~q~-g~~-gil~~~~~~rvvLdv~E~~~r--rIsf~~ve-------Gdfr--~f~G~W~LeplgdG~TrVtY 272 (554)
-++ ...++.. ... .+...-|....... ...++. .|.+..++ |.++ .+.|.|.++|.++++|+|+|
T Consensus 83 id~~~~i~y~~~~~p~pv~~RDfV~~r~~~-~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty 161 (197)
T cd08869 83 LDEDTEVYQYVTNSMAPHPTRDYVVLRTWR-TDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTH 161 (197)
T ss_pred ecCCcEEEEEEeeCCCCCCCceEEEEEEEE-ecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEE
Confidence 543 2233332 110 01000111110000 001111 33444442 3333 56799999999888999999
Q ss_pred EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769 273 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 307 (554)
Q Consensus 273 ~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r 307 (554)
.++++|+ |.+|.|++|..- .-+...|..||+-
T Consensus 162 ~~~~Dp~--G~iP~wl~N~~~-~~~~~~~~~l~~~ 193 (197)
T cd08869 162 ICRVDLR--GRSPEWYNKVYG-HLCARELLRIRDS 193 (197)
T ss_pred EEEECCC--CCCCceeecchH-hHHHHHHHHHHhh
Confidence 9999994 789999965554 7788899999863
No 34
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.18 E-value=3.2e-10 Score=111.40 Aligned_cols=158 Identities=9% Similarity=0.049 Sum_probs=112.6
Q ss_pred CCceeecccccCCCCcccceEEEeeecccccc-CCceEEEEEEEEEc-CCHHHHHHHHhCcCcccccCcCCcEEEEEEec
Q 008769 130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLEN-GGVHRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSRE 207 (554)
Q Consensus 130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~-~g~~r~V~asI~I~-APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~ 207 (554)
++|++..+.+|| +||.| .+ +.+...+++..+++ ++++++++++.|.+.+++|.+.|.++ ++..
T Consensus 25 ~~W~l~~~~~~i-------~Vy~r------~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~--~~~~ 89 (207)
T cd08910 25 AAWELLVESSGI-------SIYRL------LDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKEL--YEKE 89 (207)
T ss_pred CCeEEEEecCCe-------EEEEe------ccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhh--eeec
Confidence 479999999999 99999 33 34467899999998 79999999999999999999999873 4332
Q ss_pred C-CEEEEEEE--------eccceeEEEEEEEEEEEEeecCCCeEE-----------EEEEecCCc--eeEEEEEEEEcCC
Q 008769 208 N-NKVRILQE--------GCKGLLYMVLHARVVMDICEQHEQEIS-----------FEQVEGDFD--SFQGKWLFEQLGS 265 (554)
Q Consensus 208 g-~~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~rrIs-----------f~~veGdfr--~f~G~W~Leplgd 265 (554)
. +...+++. .++.++...+. .. ...++.+. +...+|.++ .+.|.|.|++.++
T Consensus 90 ~~~~~i~y~~~k~PwPvs~RD~V~~r~~~-----~~-~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~ 163 (207)
T cd08910 90 CDGETVIYWEVKYPFPLSNRDYVYIRQRR-----DL-DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK 163 (207)
T ss_pred CCCCEEEEEEEEcCCCCCCceEEEEEEec-----cc-cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC
Confidence 2 22222221 12211100000 00 00111110 111223343 7899999999988
Q ss_pred CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 266 HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 266 G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
++|.++|..+.+| +|.||.+++|.+..+.++.+|++|+..+.+
T Consensus 164 ~~t~i~~~~~~DP--gG~IP~wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 164 KGSKVFMYYFDNP--GGMIPSWLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred CceEEEEEEEeCC--CCcchHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 8899999999999 478999999999999999999999998864
No 35
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.15 E-value=9.7e-10 Score=110.80 Aligned_cols=153 Identities=7% Similarity=0.019 Sum_probs=104.0
Q ss_pred CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769 129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 208 (554)
Q Consensus 129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g 208 (554)
.++|.+.++.+|| .||.+ +. .....+++++.|++|+++|+++|.|.+++++|.++|.+++++++-+
T Consensus 58 ~~~W~l~~~~~gI-------~Vyt~------~~-s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id 123 (240)
T cd08913 58 KDNWVLSSEKNQV-------RLYTL------EE-DKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVD 123 (240)
T ss_pred cCCCEEEEccCCE-------EEEEE------eC-CCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecC
Confidence 3589999999999 99997 32 2335778899999999999999999999999999999999998854
Q ss_pred CEEEEEEEeccc----eeEEEEEEEEEEEEeecCCC-e-EEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769 209 NKVRILQEGCKG----LLYMVLHARVVMDICEQHEQ-E-ISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY 272 (554)
Q Consensus 209 ~~vrv~q~g~~g----il~~~~~~rvvLdv~E~~~r-r-Isf~~ve--------Gdfr--~f~G~W~LeplgdG~TrVtY 272 (554)
....+++.-... +-..-|.........+..+. . |..+++. |.++ .+.|.|.|.+.+++.|+|+|
T Consensus 124 ~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY 203 (240)
T cd08913 124 EDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSY 203 (240)
T ss_pred CCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEE
Confidence 323344421111 00000111100000000110 0 2222222 2222 67899999999999999999
Q ss_pred EEEEEeccCccchHHHHHHHHHhhHH
Q 008769 273 SVESKMQKNSLLSEAIMEEVIYEDLP 298 (554)
Q Consensus 273 ~v~~eP~~gg~LP~~Lver~vre~l~ 298 (554)
..+.+| | .||.++++.++.+...
T Consensus 204 ~~~~dP--G-~LP~~~~N~~~~~~p~ 226 (240)
T cd08913 204 YNQATP--G-VLPYISTDIAGLSSEF 226 (240)
T ss_pred EEEeCC--c-cccHHHhhhhhhccch
Confidence 999887 3 7999999998887553
No 36
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.14 E-value=4.5e-10 Score=107.70 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=107.2
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEE
Q 008769 165 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 244 (554)
Q Consensus 165 ~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf 244 (554)
...++.+++|++|+++||++..|+|++|.||.++.+++|+.... ..|..+.-..+.+.|.++++-+ .++.+|.|
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr---SrW~~~ap~g~~v~Wea~it~d---~~~e~I~W 142 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR---SRWKANAPLGLEVEWEAEITKD---IPGERIQW 142 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc---cceeEcCCCCceEEEeehhhcc---CCCcEEee
Confidence 44578899999999999999999999999999999999996543 3344433233457888886533 47889999
Q ss_pred EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHH----HhhHHHHHHHHHHHHHhh
Q 008769 245 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI----YEDLPSNLCAIRDYVEKR 311 (554)
Q Consensus 245 ~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~v----re~l~~~L~ALR~rAEr~ 311 (554)
+.++|.--...|.-+|++..+..|.|+..+.+.|. +++...++++++ .+.+.+.|+.||..+|..
T Consensus 143 ~Sl~Ga~v~NsG~VrF~~~pg~~t~V~v~lsY~~P--gg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~ 211 (217)
T COG5637 143 ESLPGARVENSGAVRFYDAPGDSTEVKVTLSYRPP--GGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG 211 (217)
T ss_pred ecCCCCcCCCCccEEeeeCCCCceEEEEEEEecCC--ccHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence 99999544668999999987778999999999984 344455555554 456677788888887763
No 37
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.11 E-value=8.1e-09 Score=96.57 Aligned_cols=160 Identities=12% Similarity=0.193 Sum_probs=112.7
Q ss_pred CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC
Q 008769 130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 209 (554)
Q Consensus 130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~ 209 (554)
.+|+..++.+|+ +||.+..+ ..+...+++..+|++|+++|++++.|.+.++.|.+.|..+++++..++
T Consensus 15 ~~W~~~~~~~~v-------~vy~~~~~-----~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~ 82 (193)
T cd00177 15 EGWKLVKEKDGV-------KIYTKPYE-----DSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDE 82 (193)
T ss_pred CCeEEEEECCcE-------EEEEecCC-----CCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCC
Confidence 389999999999 99999533 235788999999999999999999999999999999999999988654
Q ss_pred EE-EEEEEeccc--ee--EEEEEEEEEEEEeecCCCeEEE--EEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769 210 KV-RILQEGCKG--LL--YMVLHARVVMDICEQHEQEISF--EQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY 272 (554)
Q Consensus 210 ~v-rv~q~g~~g--il--~~~~~~rvvLdv~E~~~rrIsf--~~ve--------Gdfr--~f~G~W~LeplgdG~TrVtY 272 (554)
.. .++..-... +- .+.+... . . ...+..+.+ ..++ |.++ .+.+.|.|++.+++.|+++|
T Consensus 83 ~~~i~~~~~~~p~p~~~Rdfv~~~~-~-~--~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~ 158 (193)
T cd00177 83 HTDIIYYKTKPPWPVSPRDFVYLRR-R-R--KLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTY 158 (193)
T ss_pred CeEEEEEEeeCCCccCCccEEEEEE-E-E--EcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEE
Confidence 32 222211000 00 0111111 0 0 011222222 2221 2222 33677999999888999999
Q ss_pred EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769 273 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 307 (554)
Q Consensus 273 ~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r 307 (554)
..+++|+ +.+|.++++..+...+...++.++..
T Consensus 159 ~~~~D~~--g~iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 159 VLQVDPK--GSIPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEeeCCC--CCccHHHHHhhhhhccHHHHHHHHHh
Confidence 9999995 67999999999998888888777653
No 38
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.08 E-value=3.4e-09 Score=106.52 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=94.6
Q ss_pred CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769 129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 208 (554)
Q Consensus 129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g 208 (554)
.++|++..+.+|| +||+| + +.+...++++..|++|+++|+++|.|.+++++|.+++.+++++++-+
T Consensus 54 ~~~W~l~~~k~gI-------kVytr------~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id 119 (235)
T cd08873 54 KSDWTVASSTTSV-------TLYTL------E-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVG 119 (235)
T ss_pred cCCCEEEEcCCCE-------EEEEe------c-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeC
Confidence 3599999999999 99999 3 45566789999999999999999999999999999999999998755
Q ss_pred CEEE-EEEEeccc---eeEEEEEEEEEEEEeecCCC--eEEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 008769 209 NKVR-ILQEGCKG---LLYMVLHARVVMDICEQHEQ--EISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY 272 (554)
Q Consensus 209 ~~vr-v~q~g~~g---il~~~~~~rvvLdv~E~~~r--rIsf~~ve--------Gdfr--~f~G~W~LeplgdG~TrVtY 272 (554)
+... +++. ... +-..-|............+. .|.++.+. |.++ .+.|.|.|+|+++++|.|+|
T Consensus 120 ~d~~iyy~~-~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY 198 (235)
T cd08873 120 EDDGIYHTT-MPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSY 198 (235)
T ss_pred CCcEEEEEE-cCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEE
Confidence 4333 3332 111 00001111100000001111 23444444 2233 78899999999988999999
Q ss_pred EEEEEe
Q 008769 273 SVESKM 278 (554)
Q Consensus 273 ~v~~eP 278 (554)
..+++|
T Consensus 199 ~~~~dP 204 (235)
T cd08873 199 YNETNP 204 (235)
T ss_pred EEEcCC
Confidence 999998
No 39
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.08 E-value=3.3e-09 Score=106.48 Aligned_cols=171 Identities=13% Similarity=0.167 Sum_probs=117.7
Q ss_pred CceeecccccCCCCcccceEEEeeeccccccCCc-eEEEEEEEEEc-CCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769 131 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGV-HRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSREN 208 (554)
Q Consensus 131 ~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~-~r~V~asI~I~-APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g 208 (554)
+|++..+.+|| +||.|..+ .++. ...+++..+|+ ++++++.+++.|.+.+++|...|.+++++++-+
T Consensus 27 ~W~l~~~~~gi-------kVy~r~~~----~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~ 95 (235)
T cd08872 27 GWQLFAEEGEM-------KVYRREVE----EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLS 95 (235)
T ss_pred CCEEEEeCCce-------EEEEEECC----CCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecC
Confidence 89999999999 99999322 1222 22689999999 999999999999999999999999999998743
Q ss_pred -CEEEEEEE--------eccceeEEEEEE------------EEEEEEe-e---cCC--CeEEEEEEe----c-CCceeEE
Q 008769 209 -NKVRILQE--------GCKGLLYMVLHA------------RVVMDIC-E---QHE--QEISFEQVE----G-DFDSFQG 256 (554)
Q Consensus 209 -~~vrv~q~--------g~~gil~~~~~~------------rvvLdv~-E---~~~--rrIsf~~ve----G-dfr~f~G 256 (554)
+...+++. .++.++...+.. .+++... + .|+ ..++..... + .+..-.|
T Consensus 96 ~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g 175 (235)
T cd08872 96 QDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDG 175 (235)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCC
Confidence 33334442 222221111110 0111100 0 011 222222111 1 1112237
Q ss_pred EEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCC
Q 008769 257 KWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDN 315 (554)
Q Consensus 257 ~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~~ 315 (554)
.|.+++ ++++|+|+|..+++| +|++|.++++.+.+..++..|+.|-..+.....++
T Consensus 176 ~~~~t~-~~~~~~ity~~~~dP--gG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~~~~~ 231 (235)
T cd08872 176 NQEITR-DNILCKITYVANVNP--GGWAPASVLRAVYKREYPKFLKRFTSYVQEKTKGK 231 (235)
T ss_pred cccccC-CCCeEEEEEEEEeCC--CCCccHHHHHHHHHhhchHHHHHHHHHHHHhcCCC
Confidence 799988 577999999999999 57899999999999999999999999988766553
No 40
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.07 E-value=1.5e-09 Score=109.03 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=96.6
Q ss_pred CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769 129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 208 (554)
Q Consensus 129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g 208 (554)
.++|.+..+.+|| +||++ + +.....+++++++++|+++++++|.|++++++|.++|.+++++++.+
T Consensus 55 ~~~W~l~~dkdgI-------kVytr------~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld 120 (236)
T cd08914 55 KSGWEVTSTVEKI-------KIYTL------E-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVS 120 (236)
T ss_pred cCCCEEEEccCCE-------EEEEe------c-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeC
Confidence 4699999999999 99999 3 33357899999999999999999999999999999999999998844
Q ss_pred CEEEEEEEeccceeEEEEEEEEEEEEee---c-CCC--eEEEEEEe--------cCCc--e-eEEEEEEEEcCCCeEEEE
Q 008769 209 NKVRILQEGCKGLLYMVLHARVVMDICE---Q-HEQ--EISFEQVE--------GDFD--S-FQGKWLFEQLGSHHTLLK 271 (554)
Q Consensus 209 ~~vrv~q~g~~gil~~~~~~rvvLdv~E---~-~~r--rIsf~~ve--------Gdfr--~-f~G~W~LeplgdG~TrVt 271 (554)
..-.+++.-.....++.=. .+++.... . .+. .|..+.+. |.++ . +.|. .|+|+++++|+|+
T Consensus 121 ~~~~vY~~~~pPw~Pvk~R-D~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~Vt 198 (236)
T cd08914 121 EDDQIYHITCPIVNNDKPK-DLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVS 198 (236)
T ss_pred CCcCEEEEecCCCCCCCCc-eEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEE
Confidence 3222444211110000000 11111110 1 111 12223332 2232 3 6787 9999999999999
Q ss_pred EEEEEEeccCccchHHHH
Q 008769 272 YSVESKMQKNSLLSEAIM 289 (554)
Q Consensus 272 Y~v~~eP~~gg~LP~~Lv 289 (554)
|..+++| |++|-+.+
T Consensus 199 Y~~~~dP---g~lp~~~~ 213 (236)
T cd08914 199 YFNQISA---SILPYFAG 213 (236)
T ss_pred EEEEcCC---ccchheEE
Confidence 9999998 57898763
No 41
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.06 E-value=1.4e-08 Score=98.97 Aligned_cols=162 Identities=14% Similarity=0.099 Sum_probs=113.5
Q ss_pred CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhC--cCcccccCcCCcEEEEEEec
Q 008769 130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTA--YETLPEIVPNLAISKILSRE 207 (554)
Q Consensus 130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTD--yE~yPewiP~V~sSrVL~r~ 207 (554)
.+|.+.++.+|| +||.++.. +...+.++++.+|++++++|+++|.| .+..+.|.+.|.+++++++-
T Consensus 22 ~~W~~~~~~~~i-------~v~~~~~~-----~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~i 89 (206)
T cd08867 22 DGWKVLKTVKNI-------TVSWKPST-----EFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKI 89 (206)
T ss_pred CCcEEEEcCCCc-------EEEEecCC-----CCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEe
Confidence 589999999999 99999322 11236689999999999999999999 89999999999999999885
Q ss_pred CC-EEEEEEEecc---cee-EEEEEEEEEEEEe-ecCCC--eEEEEEE--------ecCCc--eeEEEEEEEEcC--CCe
Q 008769 208 NN-KVRILQEGCK---GLL-YMVLHARVVMDIC-EQHEQ--EISFEQV--------EGDFD--SFQGKWLFEQLG--SHH 267 (554)
Q Consensus 208 g~-~vrv~q~g~~---gil-~~~~~~rvvLdv~-E~~~r--rIsf~~v--------eGdfr--~f~G~W~Leplg--dG~ 267 (554)
+. ...++..... +++ ..-|. .+... ...+. .+....+ .|.++ ...|-|.++|.+ +++
T Consensus 90 d~~~~i~~~~~p~~~~~~vs~RDfV---~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~ 166 (206)
T cd08867 90 SEDLCVGRTITPSAAMGLISPRDFV---DLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDK 166 (206)
T ss_pred CCCeEEEEEEccccccCccCCcceE---EEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCc
Confidence 43 3233332100 000 00010 00000 01111 1222333 23333 457889999874 467
Q ss_pred EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769 268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 308 (554)
Q Consensus 268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA 308 (554)
|.++|.++++|+ |.+|.++++..+.+.+...+.+||.++
T Consensus 167 t~~~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 167 SFLVLYVQTDLR--GMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred eEEEEEEEeccC--CCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 999999999995 689999999999999999999999874
No 42
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.02 E-value=1.4e-08 Score=97.74 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=115.5
Q ss_pred CCceeecc-cccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHH-HHHHHhCcCcccccCcCCcEEEEEEec
Q 008769 130 SKWGVFGQ-VCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE-VWNVMTAYETLPEIVPNLAISKILSRE 207 (554)
Q Consensus 130 ~~W~~~~~-~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~-VWaVLTDyE~yPewiP~V~sSrVL~r~ 207 (554)
.+|.+..+ .+|+ .+|-+..+ .+.....+++...|+++++. +-.++.|.+..++|.+.|.++++++.-
T Consensus 19 ~~W~~~~~~~~~~-------~~~~~~~~----~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~ 87 (206)
T smart00234 19 PGWVLSSENENGD-------EVRSILSP----GRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVI 87 (206)
T ss_pred CccEEccccCCcc-------eEEEEccC----CCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEE
Confidence 48999997 7888 88888322 01247889999999999996 778999999999999999999999874
Q ss_pred CCE--EEEEEEeccc-ee-EEEEEEEEEEEEeecCCC--eEEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEE
Q 008769 208 NNK--VRILQEGCKG-LL-YMVLHARVVMDICEQHEQ--EISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLK 271 (554)
Q Consensus 208 g~~--vrv~q~g~~g-il-~~~~~~rvvLdv~E~~~r--rIsf~~ve--------Gdfr--~f~G~W~LeplgdG~TrVt 271 (554)
++. +..+...... .+ ..-|....... ...+. .|....+. |.++ .+.|.|.++|.+++.|+|+
T Consensus 88 ~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~--~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt 165 (206)
T smart00234 88 DNGTVIYHYVSKFVAGPVSPRDFVFVRYWR--ELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVT 165 (206)
T ss_pred CCCCeEEEEEEecccCcCCCCeEEEEEEEE--EcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEE
Confidence 432 2222111110 11 00011100000 11111 22222222 2233 5788999999998889999
Q ss_pred EEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769 272 YSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 311 (554)
Q Consensus 272 Y~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~ 311 (554)
|..+.+|+ |++|.++++.++...+..+++.+++.++..
T Consensus 166 ~~~~~D~~--G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 166 WVSHADLK--GWLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred EEEEEecC--CCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 99999994 679999999999999999999998887653
No 43
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.85 E-value=3.1e-07 Score=85.45 Aligned_cols=112 Identities=17% Similarity=0.423 Sum_probs=82.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhCcCc-c-cccCcCCcEEEEEEecC--CEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769 167 CVVASITVKAPVSEVWNVMTAYET-L-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 242 (554)
Q Consensus 167 ~V~asI~I~APpe~VWaVLTDyE~-y-PewiP~V~sSrVL~r~g--~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI 242 (554)
.++.++.|+||+++||+++.|+.+ + +.|.|.+.++++++.++ +.++.+..+..+ -...+..+ ++..+...+++
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~-~~~~~kE~--l~~~D~~~~~~ 78 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG-KVKYVKER--IDAVDEENKTY 78 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCC-cceEEEEE--EEEEcccccEE
Confidence 468899999999999999999994 5 56889999999987643 234544432222 11123333 33344457899
Q ss_pred EEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccC
Q 008769 243 SFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKN 281 (554)
Q Consensus 243 sf~~veGdf-----r~f~G~W~LeplgdG~TrVtY~v~~eP~~g 281 (554)
.|++++|++ +.+.++.+|.+.++++|.++|.+.|++..+
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Confidence 999999864 478899999999888999999999998643
No 44
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=98.81 E-value=5.7e-07 Score=86.29 Aligned_cols=168 Identities=11% Similarity=0.136 Sum_probs=116.8
Q ss_pred cCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe-
Q 008769 128 LNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR- 206 (554)
Q Consensus 128 ~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r- 206 (554)
...+|....+..+. .++.++.+. .+......+++...|++++++++..+-|-.. .|.+.|.++++++.
T Consensus 17 ~~~~W~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~ 85 (206)
T PF01852_consen 17 DEDGWKLYKDKKNG-------DVYYKKVSP--SDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQI 85 (206)
T ss_dssp TCTTCEEEEEETTT-------CEEEEEEEC--SSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEE
T ss_pred CCCCCeEeEccCCC-------eEEEEEeCc--cccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeec
Confidence 34599999977777 777776441 1113677899999999999977777777666 99999999999987
Q ss_pred cCCEEEEEEE--ecc--ceeEEEEEEEEEEEEeec-CCC--eEEEEEEe---------cCCc--eeEEEEEEEEcCCCeE
Q 008769 207 ENNKVRILQE--GCK--GLLYMVLHARVVMDICEQ-HEQ--EISFEQVE---------GDFD--SFQGKWLFEQLGSHHT 268 (554)
Q Consensus 207 ~g~~vrv~q~--g~~--gil~~~~~~rvvLdv~E~-~~r--rIsf~~ve---------Gdfr--~f~G~W~LeplgdG~T 268 (554)
+++....+.. ... .+...-|.. +..... .+. .|.++.++ |.++ .+.+.|.|++.+++.|
T Consensus 86 ~~~~~i~~~~~~~~~~~p~~~RDfv~---~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~ 162 (206)
T PF01852_consen 86 DEDTDIVYFVMKSPWPGPVSPRDFVF---LRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRT 162 (206)
T ss_dssp ETTEEEEEEEEE-CTTTTSSEEEEEE---EEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEE
T ss_pred CCCCeEEEEEecccCCCCCCCcEEEE---EEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCc
Confidence 4443222221 111 121111111 111111 222 34444443 2222 5678999999999899
Q ss_pred EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769 269 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 311 (554)
Q Consensus 269 rVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~ 311 (554)
+|+|..+++|+ |++|.++++.++...+...++.+++++++.
T Consensus 163 ~vt~~~~~D~~--G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 163 RVTYVSQVDPK--GWIPSWLVNMVVKSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp EEEEEEEEESS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEECCC--CCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999994 789999999999999999999999998864
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.78 E-value=1.2e-07 Score=93.54 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=105.9
Q ss_pred ccCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe
Q 008769 127 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR 206 (554)
Q Consensus 127 ~~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r 206 (554)
+...+|...+..+++ |++..+.+ .+...+.++++++|+|++++|+++|.|. ++.|.++|.+++++++
T Consensus 24 ~k~k~w~~~~~~~~~-------el~~~k~~----~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ 90 (204)
T cd08908 24 EKFKGWVSYSTSEQA-------ELSYKKVS----EGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEI 90 (204)
T ss_pred HHhcCCcccCCCCcE-------EEEEeccC----CCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEe
Confidence 445688888888888 88888644 2444789999999999999999999888 8999999999999988
Q ss_pred cC-CEEEEEEE--------eccceeEEEEEEEEEEEEeecCCCe--EEEEEEec------CC--ceeEEEEEEEEcCCCe
Q 008769 207 EN-NKVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVEG------DF--DSFQGKWLFEQLGSHH 267 (554)
Q Consensus 207 ~g-~~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~rr--Isf~~veG------df--r~f~G~W~LeplgdG~ 267 (554)
-+ +.-.+++. .++.++...+.. ..+... |....+.. .+ ..+.|.|.|+|.++|+
T Consensus 91 ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~-------~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~ 163 (204)
T cd08908 91 LDSQTEIYQYVQNSMAPHPARDYVVLRTWRT-------NLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGK 163 (204)
T ss_pred cCCCceEEEEEccCCCCCCCcEEEEEEEEEE-------eCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCc
Confidence 44 33233332 222221101110 001111 11111110 11 2679999999999899
Q ss_pred EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 008769 268 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 306 (554)
Q Consensus 268 TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~ 306 (554)
|+|+|..+++|+ |.+|.|++|. +-.-+...|..||+
T Consensus 164 t~vtyi~~~DPg--G~iP~W~~N~-~g~~~~~~~~~~r~ 199 (204)
T cd08908 164 SKLTYMCRIDLR--GHMPEWYTKS-FGHLCAAEVVKIRD 199 (204)
T ss_pred EEEEEEEEeCCC--CCCcHHHHhh-HHHHHHHHHHHHHh
Confidence 999999999994 6799988754 44555556666665
No 46
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=98.75 E-value=6.5e-08 Score=94.84 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=112.2
Q ss_pred ceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCC-EEEE-EEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769 164 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN-KVRI-LQEGCKGLLYMVLHARVVMDICEQHEQE 241 (554)
Q Consensus 164 ~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~-~vrv-~q~g~~gil~~~~~~rvvLdv~E~~~rr 241 (554)
..+..+..-.|.++|+++|++++|++.|-+|+|+|++|.|.++.++ .... ..+|+..+. ..|+..++++ ++.-
T Consensus 66 r~k~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~-E~y~S~Vt~~----~p~l 140 (227)
T KOG3177|consen 66 REKAYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLD-ERYTSNVTCV----KPHL 140 (227)
T ss_pred HHHHHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCcccc-hhheeeeEEe----cccc
Confidence 3555677778999999999999999999999999999999998744 2322 345777643 4666666543 4433
Q ss_pred EEEEEEe-cCCceeEEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 008769 242 ISFEQVE-GDFDSFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 316 (554)
Q Consensus 242 Isf~~ve-Gdfr~f~G~W~Leplg--dG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~~~ 316 (554)
+.-...+ +-|..+...|+|.|-. .+.|.|.|.+.|+.+ ..|-..+..-++.+....++.||.+||...++.-.
T Consensus 141 ~kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~--S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~ 216 (227)
T KOG3177|consen 141 TKTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFK--SLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPES 216 (227)
T ss_pred eEEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 3333344 4577999999999865 578999999999974 55666677778888889999999999999988744
No 47
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.73 E-value=3.4e-08 Score=89.06 Aligned_cols=64 Identities=44% Similarity=0.786 Sum_probs=60.1
Q ss_pred CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
+++|+|+.|+|.|++++.+++.+|.++|++++.|...+|..|+...+++.++.+|.++|++||+
T Consensus 81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4689999999999999987656899999999999999999999999999999999999999984
No 48
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.65 E-value=5.8e-07 Score=79.74 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=85.7
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 247 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v 247 (554)
+..++.|+|||++||++++|.++|++|++... ...-...|+.......+. .. ..+...+ +++ .++++|.|+..
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~G~~~~~~~~~~-~~--~~~~~~v-~~~--~~~~~l~~~~~ 74 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-VESDWKVGSAFEYRRGDD-GT--VDVEGEV-LES--DPPRRLVHTWR 74 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecccc-cccCCcCCCeEEEEeCCC-cc--cccceEE-EEe--cCCCeEEEEEe
Confidence 56789999999999999999999999998732 122223455444332221 11 1222222 122 47788888876
Q ss_pred ecC------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 248 EGD------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 248 eGd------fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
.+. ......+|.|++.++ +|+|++.....+ +...+...+..+...+|+.|++++|.
T Consensus 75 ~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 75 AVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFP------PGSPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred cCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCC------CchhHHHhhhcCHHHHHHHHHHHhcC
Confidence 422 125677889999765 699988876532 22245667788999999999999873
No 49
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.64 E-value=2.8e-06 Score=78.16 Aligned_cols=133 Identities=13% Similarity=0.147 Sum_probs=81.8
Q ss_pred EEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEE-EeccceeEEEEEEEEEEEEeecCCCe--EEEEE
Q 008769 170 ASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQE--ISFEQ 246 (554)
Q Consensus 170 asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q-~g~~gil~~~~~~rvvLdv~E~~~rr--Isf~~ 246 (554)
.+..|++|+++||++|+|++++..-+|+|.+.+.+. +...... .+... +...|..++.+.-.. ++.. +.++-
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~-i~~~~~g~~~~~~~~-~~~~~~~~~~g 75 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGP-IKGTFDGEVRITEID-PPESYTLEFEG 75 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCC-CEEEEEEEEEEEEEE-TTTEEEEEEEE
T ss_pred CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEecc-EEEEEEEEEEEEEcC-CCcceEeeeec
Confidence 468899999999999999999999999999999875 4333222 23333 335566555443222 3333 55554
Q ss_pred EecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 247 VEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 247 veGdf-r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
..... -...+.-++...+++.|+|+|+.+++.. + ....+.++++....+.+++.|-+.+++
T Consensus 76 ~g~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~--G-~la~~g~~~i~~~~~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 76 RGRGGGSSASANITLSLEDDGGTRVTWSADVEVG--G-PLASLGQRLIESVARRLIEQFFENLER 137 (140)
T ss_dssp EECTCCEEEEEEEEEEECCCTCEEEEEEEEEEEE--C-HHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccceEEEEEEEEEcCCCCCcEEEEEEEEEEc--c-CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 43221 1334444555544555999999999974 3 344456666666666666666555543
No 50
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.63 E-value=1.6e-06 Score=81.49 Aligned_cols=134 Identities=14% Similarity=0.147 Sum_probs=89.8
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 247 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v 247 (554)
++.+..|++||++||+.|+|.|.+.+-+|.|.+++.. +++.....+-.-+.+-.+|..++.+.....+++.+...-.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~---g~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g~ 79 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN---GDEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITINGS 79 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec---CCeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEee
Confidence 5788999999999999999999999999999999864 3343332221222333456666554433356677766543
Q ss_pred ec---CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769 248 EG---DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 308 (554)
Q Consensus 248 eG---dfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA 308 (554)
-| -+..+.....+++.+++ |+|.|.++.+.. .+...+..+.++..++.++..+-+.+
T Consensus 80 G~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~g---g~laqlGsr~i~~~~~kli~~~~~~l 139 (146)
T COG3427 80 GGGAAGFADGTVDVQLEPSGEG-TRVNWFADANVG---GKLAQLGSRLIDSVARKLINRFFDCL 139 (146)
T ss_pred cccccceeeeeeEEEEEEcCCC-cEEEEEEEcccc---HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 21 33466777789998876 999999998862 24455666666665555555444433
No 51
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.60 E-value=4.2e-07 Score=84.86 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=90.1
Q ss_pred CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769 162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 241 (554)
Q Consensus 162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr 241 (554)
.++.+.|..+++|+||+++||++|+|.+++++|++.. ....+.|+..+....+. +. ..+...++ + ..++++
T Consensus 7 ~~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~~~~~G~~~~~~~~~~-~~--~~~~~~v~-e--~~p~~~ 77 (157)
T cd08899 7 LDGGATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TGDLRVGGRVEFVMDDE-EG--PNATGTIL-A--CEPPRL 77 (157)
T ss_pred cCCCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CCCcccCceEEEEecCC-CC--CccceEEE-E--EcCCcE
Confidence 3556789999999999999999999999999999943 12223344433322221 11 12222221 1 246778
Q ss_pred EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 008769 242 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 312 (554)
Q Consensus 242 Isf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~ 312 (554)
|.|....++ ......|+|++.+ ++|+|+|..++.+. . .....+..+....|..|++++|+..
T Consensus 78 l~~~~~~~~-~~~~~~~~l~~~~-~gT~v~~~~~~~~~--~-----~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 78 LAFTWGEGG-GESEVRFELAPEG-DGTRLTLTHRLLDE--R-----FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEEecCCC-CCceEEEEEEEcC-CCEEEEEEEeccCc--h-----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 988877655 3446788899876 56999999887542 1 2346667888999999999988653
No 52
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.55 E-value=6.2e-06 Score=81.51 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=111.7
Q ss_pred CCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEe-cC
Q 008769 130 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-EN 208 (554)
Q Consensus 130 ~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r-~g 208 (554)
++|++.++.+++ .||.+-+. + ...+..+++.+|+++++.||+++.|.+.-.+|.+.|.+.+++++ ++
T Consensus 22 ~gWk~~k~~~~~-------~v~~k~~~---~--~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~ 89 (204)
T cd08904 22 SGWKVVKTSKKI-------TVSWKPSR---K--YHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDS 89 (204)
T ss_pred cCCeEEecCCce-------EEEEEEcC---C--CCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCC
Confidence 699999999999 99998433 2 22377889999999999999999999999999999999999988 44
Q ss_pred CEEEEEEEec--c-cee-EEEEEEEEEEEEeec-CCCe--EEEEEEe--------cCCc--eeEEEEEEEEcCCC--eEE
Q 008769 209 NKVRILQEGC--K-GLL-YMVLHARVVMDICEQ-HEQE--ISFEQVE--------GDFD--SFQGKWLFEQLGSH--HTL 269 (554)
Q Consensus 209 ~~vrv~q~g~--~-gil-~~~~~~rvvLdv~E~-~~rr--Isf~~ve--------Gdfr--~f~G~W~LeplgdG--~Tr 269 (554)
+....+.+.. . +++ +.-|.. ++.... .+.. +....++ |.++ ..-+-|.+.|++++ .|.
T Consensus 90 ~T~I~~~~~~~~~~~~vspRDfV~---vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~ 166 (204)
T cd08904 90 DTFICHTITQSFAMGSISPRDFVD---LVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSK 166 (204)
T ss_pred CcEEEEEecccccCCcccCceEEE---EEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceE
Confidence 4444443211 1 111 001111 101000 1111 1122222 2232 23467889998653 799
Q ss_pred EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769 270 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 308 (554)
Q Consensus 270 VtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA 308 (554)
++|-+..+|+ |+||.++++.++...+......|+..+
T Consensus 167 l~~~~~~Dlk--G~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 167 LVMFVQPELR--GNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEEEEEeCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9999999995 789999999999999998888887653
No 53
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.47 E-value=2.6e-07 Score=82.02 Aligned_cols=59 Identities=29% Similarity=0.558 Sum_probs=56.4
Q ss_pred CCCCCCcceeeeEEeeecCC---CCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHH
Q 008769 1 MVDGDFKKFEGKWSIKSGTR---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALA 59 (554)
Q Consensus 1 mv~GDF~~f~G~W~l~~~~~---~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~ 59 (554)
|++|+|+.|+|.|++++..+ +.+|.++|++.++|...+|..++...++++++.||.|+|
T Consensus 69 ~~~g~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 69 QISGPFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp SSETTEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 57899999999999999987 888999999999999999999999999999999999986
No 54
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.37 E-value=2.2e-05 Score=71.41 Aligned_cols=134 Identities=17% Similarity=0.181 Sum_probs=85.6
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 243 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs 243 (554)
+..+..|+||+++||++++|.+.+.+|++. +..+.+-.+.|+..++...+..+.. +..... ++++ .++++|.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~-v~e~--~p~~~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIV-FLEI--EPPERIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEE-EEEE--cCCCEEE
Confidence 567889999999999999999999999852 2223333345555444333323321 222222 2333 4788999
Q ss_pred EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 244 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 244 f~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
|+...++ ....-+|+|++.+ ++|+|++...+... . .-...+...+..+...+|..|++.+++
T Consensus 78 ~t~~~~~-~~~~v~~~~~~~~-~gT~ltl~~~~~~~--~-~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 78 YDHGSGP-PRFRLTVTFEEQG-GKTRLTWRQVFPTA--A-ERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred EEeccCC-CcEEEEEEEEECC-CCEEEEEEEEcCCH--H-HHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 9875442 2346788999977 57999998764320 0 001123456778888999999988764
No 55
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.35 E-value=1.3e-05 Score=71.99 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=80.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEE
Q 008769 167 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 246 (554)
Q Consensus 167 ~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~ 246 (554)
.|+.++.|+||+++||++++|.++|++|++... .......+....+...+... ..+...+ +++ .++++|.|..
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g~~~~~~~~~---~~~~~~i-~~~--~p~~~l~~~~ 74 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATGEITYPGYEH---GVFPVTV-VEV--DPPRRFSFRW 74 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCcceeEEecCCCCc---cceEEEE-EEe--CCCcEEEEEe
Confidence 378899999999999999999999999999753 11111111111222112111 1122221 122 4778898886
Q ss_pred EecC---------CceeEEEEEEEEcCCCeEEEEEEEE-EEeccCccch-HH--HHHHHHHhhHHHHHHHHHHHHHh
Q 008769 247 VEGD---------FDSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLS-EA--IMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 247 veGd---------fr~f~G~W~LeplgdG~TrVtY~v~-~eP~~gg~LP-~~--Lver~vre~l~~~L~ALR~rAEr 310 (554)
..+. -......|+|++.++ +|+|++... +.. .+ .. .....+..+-..+|..|++.+|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~-----~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 75 HPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDA-----LPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred cCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCC-----CChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 5432 113467889999875 699999875 221 11 11 12345778888999999998763
No 56
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.33 E-value=1.7e-05 Score=78.68 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=104.5
Q ss_pred CCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC
Q 008769 129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 208 (554)
Q Consensus 129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g 208 (554)
..+|......++. +++..+.+ .+...+.+++++.|+++|++|...+.+ ..++|-.++.+++++++-+
T Consensus 26 fk~w~~~~~~~~~-------e~~ykK~~----d~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld 92 (205)
T cd08909 26 FKGWISCSSSDNT-------ELAYKKVG----DGNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLD 92 (205)
T ss_pred hcCCcccCCcCCe-------EEEEecCC----CCCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeC
Confidence 4578888888888 77777532 234478899999999999999998877 6999999999999998744
Q ss_pred C-EEEEEEE--------eccceeEEEEEEEEEEEEeecCCC--eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeE
Q 008769 209 N-KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSHHT 268 (554)
Q Consensus 209 ~-~vrv~q~--------g~~gil~~~~~~rvvLdv~E~~~r--rIsf~~ve-------Gdfr--~f~G~W~LeplgdG~T 268 (554)
. .-.++.. .++-++...| +.+ .+.. .|....++ |.++ .+.+.|.++|.++|+|
T Consensus 93 ~~tdi~~y~~~~~~P~~~RD~v~~R~w----~~~---~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~t 165 (205)
T cd08909 93 KQTEVYQYVLNCMAPHPSRDFVVLRSW----RTD---LPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKS 165 (205)
T ss_pred CCcEEEEEEeecCCCCCCCEEEEEEEE----EEe---CCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCE
Confidence 3 2222222 1111110111 101 1111 22333222 2222 5678899999998899
Q ss_pred EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769 269 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 307 (554)
Q Consensus 269 rVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r 307 (554)
+|+|-..++|+ |.+|.|+. +.+..-+...|..||+-
T Consensus 166 rvt~i~~vDpk--G~~P~W~~-n~~g~~~~~~~~~~r~s 201 (205)
T cd08909 166 RLTHICRVDLK--GHSPEWYN-KGFGHLCAAEAARIRNS 201 (205)
T ss_pred EEEEEEEecCC--CCChHHHH-HhHHHHHHHHHHHHHhh
Confidence 99999999995 78999875 45666666777777653
No 57
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.31 E-value=1.2e-05 Score=72.55 Aligned_cols=127 Identities=18% Similarity=0.208 Sum_probs=83.5
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcC-----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 242 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~-----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI 242 (554)
++.++.|+||+++||++++|-+.+.+|++. +..++.--+.|+..+....+.++-....+... ++++ .++++|
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~-~~ei--~p~~~l 78 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGT-YTEV--EPHKLI 78 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceE-EEEE--CCCCEE
Confidence 577899999999999999999999999754 23334434566665554332222111122332 2333 478999
Q ss_pred EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 243 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 243 sf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
.|+...+ ...+|+|++.+ ++|+|+... .+ ++.. ....+..+-...|..|++.+|+
T Consensus 79 ~~~~~~~----~~v~~~l~~~~-~gT~l~l~~--~~-----~~~~-~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 79 EYTMEDG----REVEVEFTEEG-DGTKVVETF--DA-----ENEN-PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEEcCCC----CEEEEEEEECC-CCEEEEEEE--CC-----CCCC-cHHHHHHHHHHHHHHHHHHhhC
Confidence 9986432 36789999976 569998763 32 1221 3345678888999999998763
No 58
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.27 E-value=1.5e-06 Score=78.30 Aligned_cols=63 Identities=19% Similarity=0.365 Sum_probs=58.6
Q ss_pred CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
+++|+|+.++|.|+++|.++ .+|.++|++++.|+..+|..|+...+++.+..+|.+++++|++
T Consensus 75 ~~~g~~~~~~g~w~~~p~~~-~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 75 LVDGPFKHLEGEWRFKPLGE-NACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred ecCCChhhceeEEEEEECCC-CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999875 5699999999999999999999999999999999999999975
No 59
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=98.17 E-value=4.2e-06 Score=75.26 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=53.4
Q ss_pred CCCcceeeeEEeeecCCCCceEEEEEEEeecCC--CCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~--~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
|+|+.++|.|++++.++ .+|.++|.+++.|.. .|+-.++..+++++++.+|.+++++||+
T Consensus 81 ~~~~~~~g~w~~~~~~~-~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 81 PPVASMSGEWRFEPLGG-GGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CChhhheeEEEEEECCC-CcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 89999999999999764 468999999988864 5677899999999999999999999984
No 60
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.14 E-value=0.00019 Score=65.93 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=84.0
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcC----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 243 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs 243 (554)
+..++.|+||+++||++++|-+.+.+|++. +..+.+--+.|+...+...+..+.. +..... ++++ .++++|.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~-v~~i--~p~~~l~ 77 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEE-FPNPGC-FLEV--VPGERLV 77 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCCE-ecceEE-EEEE--eCCCEEE
Confidence 566789999999999999999999999873 3344555566666555443333321 222232 2333 4788898
Q ss_pred EEEEe--c-CC-c--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 244 FEQVE--G-DF-D--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 244 f~~ve--G-df-r--~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
|+..- + .. . ....+|+|++.+ ++|+|+....... .-.........+..+-...|..|++.++
T Consensus 78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~---~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 78 FTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWT---EADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCC---HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 87432 1 11 1 145689999976 5699988643321 0001112223356888999999998876
No 61
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.11 E-value=0.00013 Score=72.13 Aligned_cols=161 Identities=10% Similarity=0.103 Sum_probs=106.1
Q ss_pred CceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecC-C
Q 008769 131 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN-N 209 (554)
Q Consensus 131 ~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g-~ 209 (554)
.|++.+...|. .|+.+.-- .......+.+.+|+..+++||+.|.+.....+|.+++.+++|+++=+ +
T Consensus 24 ~Wkl~k~~~~~-------~v~~k~~~-----ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~d 91 (202)
T cd08902 24 EWRVAKKSKDV-------TVWRKPSE-----EFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEEN 91 (202)
T ss_pred CcEEEEeCCCE-------EEEEecCC-----cCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCC
Confidence 99999999988 88888422 23334455666678999999999999999999999999999998743 4
Q ss_pred EEEE-EEEeccc--ee-EEEEEEEEEEEEee-cCCCeEEEE-EEe------cCCc--eeEEEEEEEEcCCC--eEEEEEE
Q 008769 210 KVRI-LQEGCKG--LL-YMVLHARVVMDICE-QHEQEISFE-QVE------GDFD--SFQGKWLFEQLGSH--HTLLKYS 273 (554)
Q Consensus 210 ~vrv-~q~g~~g--il-~~~~~~rvvLdv~E-~~~rrIsf~-~ve------Gdfr--~f~G~W~LeplgdG--~TrVtY~ 273 (554)
.... +.+.... ++ +.-|.. +.... ..+..+... .++ |.++ ..=+-|.+.|+.++ .|.+++-
T Consensus 92 t~I~~yvt~~~~~~iISpRDFVd---v~~~~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~ 168 (202)
T cd08902 92 CCVMRYTTAGQLLNIISPREFVD---FSYTTQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGY 168 (202)
T ss_pred cEEEEEEcccCCcCccCccceEE---EEEEEEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEE
Confidence 3332 3321111 11 001111 01111 111212110 011 2222 22356899998765 5777888
Q ss_pred EEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 008769 274 VESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 308 (554)
Q Consensus 274 v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rA 308 (554)
+.++++ |+||..+++.++-..+......||+++
T Consensus 169 lq~DLk--G~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 169 IQTDLR--GMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEecCC--CCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 888885 789999999999999999999999875
No 62
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.08 E-value=0.00022 Score=65.39 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=82.2
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCc-EE---EEEEecCCEEEEEEEecc-------ceeEEEEEEEEEEEEee
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA-IS---KILSRENNKVRILQEGCK-------GLLYMVLHARVVMDICE 236 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~-sS---rVL~r~g~~vrv~q~g~~-------gil~~~~~~rvvLdv~E 236 (554)
|+.+..|+||++.||++++|.+.+.+|++.-. .+ .+-.+.|+...+...... +.. ..+... ++++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~-~~~~g~-v~~v-- 77 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNT-DVFGGR-FLEL-- 77 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcE-eeeEEE-EEEE--
Confidence 56678899999999999999999999997432 22 222234554444333221 111 122222 2232
Q ss_pred cCCCeEEEEEEe--cCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 237 QHEQEISFEQVE--GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 237 ~~~rrIsf~~ve--Gdfr-~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
.++++|.|+..- +... ...-+|.|++.+ ++|+|++....- |..........+-..+|..|++.+|
T Consensus 78 ~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~T~lt~~~~~~-------~~~~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNERIVYTDVFDDPSLSGEMTMTWTLSPVS-GGTDVTIVQSGI-------PDGIPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred cCCCEEEEEEEecCCCCCceEEEEEEEEecC-CCEEEEEEEeCC-------CchhhhhHHHHHHHHHHHHHHHHhc
Confidence 478889887542 2222 346788999886 569999887532 2223345777888889999988876
No 63
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.06 E-value=9.3e-05 Score=67.32 Aligned_cols=131 Identities=17% Similarity=0.219 Sum_probs=83.3
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 247 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v 247 (554)
++.++.|+||++.||+.++|.+.+.+|++.-...++ +.|+..........+ ..... ++++ .++++|.|+..
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~--~~Gg~~~~~~~~~~~----~~~g~-~~~~--~p~~~l~~~w~ 72 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRL--EEGKTVTWDWEMYGA----SVPVN-VLEI--EPNKRIVIEWG 72 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccc--cCCCEEEEEEEccCC----ceEEE-EEEE--cCCCEEEEEec
Confidence 678999999999999999999999998665333332 345544333222222 11222 2233 57889998865
Q ss_pred ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHH-HHHHHhhHHHHHHHHHHHHHhh
Q 008769 248 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIM-EEVIYEDLPSNLCAIRDYVEKR 311 (554)
Q Consensus 248 eGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lv-er~vre~l~~~L~ALR~rAEr~ 311 (554)
.+. ....-+|+|++.++++|+|++....-|. .-++.+. ...+..+-..+|..|++.+|..
T Consensus 73 ~~~-~~s~v~~~l~~~~~ggT~ltl~~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 73 DPG-EPTTVEWTFEELDDGRTFVTITESGFPG---TDDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred CCC-CCEEEEEEEEECCCCcEEEEEEECCCCC---CcHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 432 1346789999987568999998653221 1122221 1224578889999999998863
No 64
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.03 E-value=0.00021 Score=62.44 Aligned_cols=121 Identities=19% Similarity=0.223 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEecC---C
Q 008769 175 KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGD---F 251 (554)
Q Consensus 175 ~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~veGd---f 251 (554)
+||+++||++++|.+.+..|.+ +....+..+.|+..++ .. .++- .+.+..+ ++++ .++++|.|+...++ .
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~~~~Gg~~~~-~~-~~g~-~~~~~~~-v~~~--~p~~~i~~~~~~~~~~~~ 73 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEMDFRPGGSFRF-MD-PDGG-EFGFDGT-VLEV--EPPERIVFTWRMPDDPDG 73 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEEECSTTEEEEE-EE-TTSE-EEEEEEE-EEEE--ETTTEEEEEEEEETSSSC
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcceeeeecCCEEEE-Ee-cCCC-CceeeEE-EEEE--eCCEEEEEEEEccCCCCC
Confidence 5999999999999999999921 2222333345555555 22 3332 1233333 2233 47889999865443 2
Q ss_pred ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 252 DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 252 r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
....-+|.|++ .+++|+|++....-+ +.......+..+...+|..|++.+|
T Consensus 74 ~~~~v~~~~~~-~~~~T~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 74 PESRVTFEFEE-EGGGTRLTLTHSGFP------DDDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEEEEEH------SHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEE-cCCcEEEEEEEEcCC------ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36678889999 556899999885332 1222222288899999999998876
No 65
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.99 E-value=0.00045 Score=63.04 Aligned_cols=133 Identities=14% Similarity=0.042 Sum_probs=82.7
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcC-----CcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 242 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~-----V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrI 242 (554)
+..+..++||++.||++++|-+.+.+|+.. +..+++--+.|+.........++.. +.... .++++ .++++|
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g-~~~~~--~p~~~l 77 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPE-ITVEA-RYHDI--VPDERI 77 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCE-EeeeE-EEEEe--cCCceE
Confidence 345677999999999999999999999964 3444444455665555443333321 22222 22333 478888
Q ss_pred EEEEEe--cCC--ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 243 SFEQVE--GDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 243 sf~~ve--Gdf--r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
.|+... ++- ....-+++|++.+ ++|+|++....-. .+..-....+..+-..+|..|++.+++
T Consensus 78 ~~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~-----~~~~~~~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 78 VYTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAF-----LDGDDDPAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEec-----ccccchhhhHHHHHHHHHHHHHHHHhC
Confidence 777532 111 1335678899876 5699999876421 111111245567788888888888764
No 66
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=97.97 E-value=0.00053 Score=64.71 Aligned_cols=135 Identities=16% Similarity=0.343 Sum_probs=90.9
Q ss_pred EEEEEEEEEcCCHHHHHHHHh-CcCcccccCcCC-cEEEEEEecCC---EEEEEEEeccceeEEEEEEEEEEEEeecCCC
Q 008769 166 RCVVASITVKAPVSEVWNVMT-AYETLPEIVPNL-AISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240 (554)
Q Consensus 166 r~V~asI~I~APpe~VWaVLT-DyE~yPewiP~V-~sSrVL~r~g~---~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r 240 (554)
..+..++.+++|++.+|+++. .-..+|.-+|++ +++++++.+++ .++.+.-+..+-. -.+..+ ++..+...+
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~-~~~Kek--ve~~D~~~~ 80 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPF-KYVKEK--VEAIDEENK 80 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSE-EEEEEE--EEEEETTTT
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCc-ceeEEE--EEeecCCCc
Confidence 357889999999999999999 556678888886 55688877543 4555544333321 122223 455556679
Q ss_pred eEEEEEEecCCc----eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHHH
Q 008769 241 EISFEQVEGDFD----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDYV 308 (554)
Q Consensus 241 rIsf~~veGdfr----~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~-LP~~Lver~vre~l~~~L~ALR~rA 308 (554)
.+.|++++|++- .|...-.+.|.++|+|.+++++++++.++.. .|.-.++. +..+++++.+++
T Consensus 81 ~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieayL 148 (151)
T PF00407_consen 81 TITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAYL 148 (151)
T ss_dssp EEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred EEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHHH
Confidence 999999999853 6666666668788889999999999875432 33333322 556666666554
No 67
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.93 E-value=0.00036 Score=64.22 Aligned_cols=134 Identities=19% Similarity=0.132 Sum_probs=82.4
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCC--------cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCC
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNL--------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 239 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V--------~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~ 239 (554)
|+.+++|+||++.||++++| .+.+|++.- ..+.+-.+.|+.... ...++-. . ... .++++ .++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~--~~~~g~~-~-~~g-~v~~v--~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE--IGEDGTE-C-EWG-TVLAW--EPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE--ecCCCcE-e-ceE-EEEEE--cCC
Confidence 67899999999999999999 588887632 334444455554432 2223321 1 122 22333 478
Q ss_pred CeEEEEEEe-cCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 240 QEISFEQVE-GDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 240 rrIsf~~ve-Gdfr-----~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
++|.|+-.- ..+. ...-+|+|++.++++|+|++....-...+.-.........+..+-..+|..|++.+|+
T Consensus 73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 899887652 1111 3467899999873579998877643210000012334445677888999999998874
No 68
>PRK10724 hypothetical protein; Provisional
Probab=97.91 E-value=2e-05 Score=74.78 Aligned_cols=66 Identities=20% Similarity=0.392 Sum_probs=52.8
Q ss_pred CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHH-HHHHHHHHhccc
Q 008769 1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQ-ALACRAERSFGW 68 (554)
Q Consensus 1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~-Ai~~~ae~~~~~ 68 (554)
|++|+|+.|+|.|+++|.+++ +|.++|+++++.+-.++..++ +++.+++..+|. |.++||+++++.
T Consensus 91 ~~~GpF~~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~~~~-~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 91 LVDGPFKKLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIELAF-GRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred ecCCChhhccceEEEEECCCC-CEEEEEEEEEEEchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 579999999999999998743 589999999995555554333 666677777777 999999998764
No 69
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.89 E-value=0.0011 Score=60.87 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=85.0
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 243 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIs 243 (554)
++.+..++|||+.||+.++|-+.+.+|+..- ..+++--+.|+...+...+.++-. ...... ++++ .++++|.
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~-~~ei--~p~~~l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGV-YHEV--TPPERIV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEE-EEEE--cCCCEEE
Confidence 4667889999999999999999999999753 234444456666555433222211 122222 2232 4778888
Q ss_pred EEEEecC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 244 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 244 f~~veGd--fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
|...-.. -....-+|+|++.+ ++|+|+.+..+.. .-.-...+...+..+-..+|..|.+.++
T Consensus 78 ~t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~~~~---~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 78 QTEEFEGLPDGVALETVTFTELG-GRTRLTATSRYPS---KEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EEeEecCCCCCceEEEEEEEECC-CCEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8754321 22456788999976 5799998755421 0011123555677888889988887764
No 70
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0029 Score=59.20 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=82.9
Q ss_pred CCceEEEEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCe
Q 008769 162 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 241 (554)
Q Consensus 162 ~g~~r~V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rr 241 (554)
...+..+..+.+|+|||+.||+.+||-+.+++|+. -.-.+.--+.++..++...+..+-. +.+...+ +++ .++++
T Consensus 4 ~~~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~~-~~~~~~~-~~v--~p~~r 78 (149)
T COG3832 4 SVEDRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGPV-HSFEGEY-LEV--VPPER 78 (149)
T ss_pred CCCCceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCCe-eecceEE-EEE--cCCcE
Confidence 45567789999999999999999999999999998 2212222233333333333333311 2333332 344 47888
Q ss_pred EEEEEEecC----CceeEEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHHH--HHHHHhhHHHHHHHHHHHHH
Q 008769 242 ISFEQVEGD----FDSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAIM--EEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 242 Isf~~veGd----fr~f~G~W~LeplgdG-~TrVtY~v~~eP~~gg~LP~~Lv--er~vre~l~~~L~ALR~rAE 309 (554)
|.|+-.... +..-..+|+|.+..+| +|++...... ..+++.-. ...+.++-..++..|++.++
T Consensus 79 Iv~tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 79 IVFTWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGG-----GFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeec-----cccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 887754422 1244788888886655 3443333322 12444332 23347888888888888765
No 71
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.43 E-value=0.0044 Score=61.62 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=104.6
Q ss_pred CcccCCCceeecccccCCCCcccceEEEeeeccccccCCceEEEEEEEEEcCCHH-HHHHHHhCcCcccccCcCCcEEEE
Q 008769 125 SSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVS-EVWNVMTAYETLPEIVPNLAISKI 203 (554)
Q Consensus 125 ~~~~~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~~g~~r~V~asI~I~APpe-~VWaVLTDyE~yPewiP~V~sSrV 203 (554)
+.+...+|....+.+++ +|+.++.. .+...+..++++.|+++|. .++++|.| -..|=+++.++++
T Consensus 22 ~~ek~kgW~~~~~~~~v-------ev~~kk~~----d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~ 87 (205)
T cd08907 22 ASERFKGWHSAPGPDNT-------ELACKKVG----DGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQV 87 (205)
T ss_pred hhhccCCceeecCCCCc-------EEEEEeCC----CCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhh
Confidence 34667799999999999 99999532 2344788999999986655 55788888 5569999999988
Q ss_pred EEec--CCEEEEEEEeccceeEEEEEEEEEEEEe--ecC-CCe-EEEEEEe-------cCCc--eeEEEEEEEEcCCCeE
Q 008769 204 LSRE--NNKVRILQEGCKGLLYMVLHARVVMDIC--EQH-EQE-ISFEQVE-------GDFD--SFQGKWLFEQLGSHHT 268 (554)
Q Consensus 204 L~r~--g~~vrv~q~g~~gil~~~~~~rvvLdv~--E~~-~rr-Isf~~ve-------Gdfr--~f~G~W~LeplgdG~T 268 (554)
+++= ++.+-.|... ++.++.-..-++++-- ..+ +.- |.=..++ |.++ .+.-.+-++|.+.|+|
T Consensus 88 Ie~Ld~n~dI~yY~~~--~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s 165 (205)
T cd08907 88 IEALENNTEVYHYVTD--SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRS 165 (205)
T ss_pred heeecCCCEEEEEEec--CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCe
Confidence 8772 3344333321 1111111111111110 000 011 1111111 1122 3334456899988999
Q ss_pred EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769 269 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 307 (554)
Q Consensus 269 rVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r 307 (554)
+|+|-..++|+ |.+|.|. ++.+..-+...|..||+-
T Consensus 166 ~ltyi~rvD~r--G~~P~Wy-nk~~g~~~a~~l~~ir~s 201 (205)
T cd08907 166 RLTHICRADLR--GRSPDWY-NKVFGHLCAMEVARIRDS 201 (205)
T ss_pred EEEEEEEeCCC--CCCcHHH-HHhHHHHHHHHHHHHHhh
Confidence 99999999995 6799998 999999999999888863
No 72
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.42 E-value=0.00032 Score=62.22 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=52.7
Q ss_pred CCC-CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHH
Q 008769 3 DGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 62 (554)
Q Consensus 3 ~GD-F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~a 62 (554)
+|. |..++|.|++++.++ +|.++|++++.|...+|..++...++..+...+.++++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 82 EGEGNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred cccceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 455 888999999999865 7999999999999999999999999999999999999875
No 73
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.32 E-value=0.00058 Score=65.40 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=53.1
Q ss_pred CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769 6 FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 6 F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
|+.+.|.|.+++.+ ..+|.++|.+.+.|+.++|..+|....++.++..|.|++++|.
T Consensus 139 ~~~~~~~~~i~~~~-~~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 139 IKTVEGQWTFTPLG-NGKTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred ceeceeeEEEEECC-CCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 78899999999987 4569999999999999999999999999999999999999983
No 74
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.18 E-value=0.0075 Score=54.31 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=74.5
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 247 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~v 247 (554)
+..++.|+||++.||+.++|-+.+..|+.... .+-.+.|+...+. .+. +.. .++++ .++++|.|+-.
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~--~~d~~~GG~~~~~----~g~----~~g-~~~~i--~p~~~l~~~w~ 68 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPA--KVDAKVGGKFSLF----GGN----ITG-EFVEL--VPGKKIVQKWR 68 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCc--eecCCCCCEEEEe----CCc----eEE-EEEEE--cCCCEEEEEEE
Confidence 56778999999999999999999999986433 2323445543332 121 111 22233 47788877654
Q ss_pred ec--C-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 008769 248 EG--D-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE 309 (554)
Q Consensus 248 eG--d-fr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~-~L~ALR~rAE 309 (554)
-. + -....-+|+|++.+ ++|+|++....-+. . - ...+..+-.. .+..|++.++
T Consensus 69 ~~~~~~~~~s~v~~~l~~~~-~gT~ltl~~~g~~~------~-~-~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 69 FKSWPEGHYSTVTLTFTEKD-DETELKLTQTGVPA------G-E-EERTREGWERYYFESIKQTFG 125 (126)
T ss_pred cCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCC------c-h-HHHHHhhHHHHHHHHHHHHhC
Confidence 21 1 12456789999975 57999988764331 1 1 1335566554 7777777653
No 75
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.02 E-value=0.0019 Score=57.30 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=52.3
Q ss_pred CCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCH----HHHHHHHhcchhHHHHHHHHHHH
Q 008769 2 VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA----IFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~----~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
..|.| .++|.|++++.++ .+|+++|++...|+..++. .+++...++.+...|..+++.||
T Consensus 75 ~~~~~-~~~~~~~f~~~~~-~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 75 VEGAD-PNAGSVRFRPAPG-RGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CCCCC-CcceEEEEEECCC-CCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 35777 8999999999764 4799999999999988875 67899999999999999999987
No 76
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.91 E-value=0.006 Score=55.86 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=70.9
Q ss_pred EcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEecCC--
Q 008769 174 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDF-- 251 (554)
Q Consensus 174 I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~veGdf-- 251 (554)
++|||++||+++||-+.+.+|.-. ..+++-.+.|+..++.. + .+.. .++++ .++++|.|+..-.+.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d~~~GG~f~~~~----~----~~~G-~~~ev--~pp~rlv~tw~~~~~~~ 68 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMDAKVGGKFSLFN----G----SVEG-EFTEL--EKPKKIVQKWRFRDWEE 68 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCccccCCcCCEEEEec----C----ceEE-EEEEE--cCCCEEEEEEecCCCCC
Confidence 479999999999999999999421 12333334555443321 1 1122 22233 478888877543221
Q ss_pred -ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHH
Q 008769 252 -DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYV 308 (554)
Q Consensus 252 -r~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~-~L~ALR~rA 308 (554)
....-+|+|++.++++|+|+....--|.... .-.......+..+... .|+.|++.+
T Consensus 69 ~~~s~vt~~~~~~~~g~T~lt~~~~g~~~~~~-~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 69 DVYSKVTIEFRAVEEDHTELKLTQTGIPSLDK-FGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCceEEEEEEEeCCCCcEEEEEEEecCccccc-cCCCchhhHHHhChHHHHHHHHHHHh
Confidence 1346789999976668999998773221100 0000223455667776 477777654
No 77
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=96.84 E-value=0.0044 Score=57.91 Aligned_cols=60 Identities=8% Similarity=0.176 Sum_probs=52.7
Q ss_pred CCCCcceeeeEEeeecCCCCceEEEEEEEeecCC--CCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 3 DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 3 ~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~--~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
.|.|..-+|.|++++.++ +|+++|.+++..+- .++..+|.+.+.+.++.+|.+||++||+
T Consensus 83 ~~p~~~m~~~W~f~~~~~--gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 83 TGPFAYMNIRWEYTEVPE--GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred CCCcceeeeeEEEEECCC--CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 577999999999999865 38999999888654 5667789999999999999999999996
No 78
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=96.26 E-value=0.017 Score=50.76 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769 5 DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 5 DF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
.|..+.|.|++++.+++ +|.++|+....|...+|..++...+++.+...|..|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 83 PVKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred CcccceEEEEEEECCCC-ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45788999999997643 69999999999998899999999999999999999999874
No 79
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.02 E-value=0.018 Score=52.17 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=50.7
Q ss_pred CCCCc-ceeeeEEeeecCCCCceEEEEEEEeecCCCCC----HHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 3 DGDFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP----AIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 3 ~GDF~-~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P----~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
.|+|+ .+.+.|++++.+ .+|.|+|.+++.+++..+ -.++...+++++...|.++++.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~--~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 86 IKPFEATNDVEFTLEPVG--GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred cCCccccceEEEEEEEcC--CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 36776 889999999984 369999999999887655 3567999999999999999999874
No 80
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.97 E-value=0.025 Score=49.52 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=47.8
Q ss_pred CCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCC--HHHHHHHHhcchhHHHHHHHHHHH
Q 008769 3 DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP--AIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 3 ~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P--~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
.|.| .+.+.|++++.++ +|.|+|+.++++++.++ ..++...+++++...|.++++.||
T Consensus 80 ~~~~-~~~~~~~~~~~~~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e 139 (140)
T cd08865 80 SGPF-PYEDTYTFEPVGG--GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLE 139 (140)
T ss_pred CCCc-ceEEEEEEEEcCC--ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 3545 4799999998754 69999999999865444 457899999999999999999987
No 81
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=95.96 E-value=0.16 Score=58.60 Aligned_cols=168 Identities=10% Similarity=0.137 Sum_probs=100.4
Q ss_pred CCCceeecccccCCCCcccceEEEeeecccccc--CCceEEEEEEEEEcCCHHHHHHHHhCcC-cccccCcCCcEEEEEE
Q 008769 129 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLEN--GGVHRCVVASITVKAPVSEVWNVMTAYE-TLPEIVPNLAISKILS 205 (554)
Q Consensus 129 ~~~W~~~~~~~gi~~~~~~deV~lrr~d~~~e~--~g~~r~V~asI~I~APpe~VWaVLTDyE-~yPewiP~V~sSrVL~ 205 (554)
.+.|++++-.+|+ .+.-+..|. +. .+-.+.+.+.-+|+|++++||++|.+.. .-.+|-..+.+.++++
T Consensus 197 ~~~Wr~~~c~NGl-------RiF~e~~~~--~~~~~~~~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE 267 (719)
T PLN00188 197 RKHWRLLQCQNGL-------RIFEELLEV--DYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVE 267 (719)
T ss_pred cCCeEEEEeeccc-------eeehhhhcc--ccccccCCceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEE
Confidence 3599999999999 444442221 11 1124789999999999999999999887 7778999999999998
Q ss_pred ecC-CEEEEEEEeccceeE-------EEEEEEEEEEEeecCCC--eEEEEEEe--------cCCc--eeEEEEEEEEcC-
Q 008769 206 REN-NKVRILQEGCKGLLY-------MVLHARVVMDICEQHEQ--EISFEQVE--------GDFD--SFQGKWLFEQLG- 264 (554)
Q Consensus 206 r~g-~~vrv~q~g~~gil~-------~~~~~rvvLdv~E~~~r--rIsf~~ve--------Gdfr--~f~G~W~Leplg- 264 (554)
+-+ +.-.+|.+...+.+. |++...+ ....+. .|.+..+. |.++ .--|-|.+.|+.
T Consensus 268 ~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Ryw----rr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~ 343 (719)
T PLN00188 268 EVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYW----RRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKP 343 (719)
T ss_pred EecCCeEEEEEEeccccccCccCcceeEEEEEE----EEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCC
Confidence 844 443444432211110 1111111 111222 23333333 2233 224889999952
Q ss_pred ---CCeEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHHhh
Q 008769 265 ---SHHTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVEKR 311 (554)
Q Consensus 265 ---dG~TrVtY~v~~eP~~gg~LP~~L--ver~vre~l~~~L~ALR~rAEr~ 311 (554)
..+|.|++-++++++ ||.|... ..+-+.=.+...+.+||+...+.
T Consensus 344 ~~g~~r~lv~~~lqtDlk--GW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~ 393 (719)
T PLN00188 344 RNGRPRTQVQHLMQIDLK--GWGVGYIPSFQQHCLLQMLNSVAGLREWFSQT 393 (719)
T ss_pred CCCCCceEEEEEEEEccC--ccccccCccccccchHHHHHHHHHHHHHHhcC
Confidence 247999999999985 6777543 11222223334556666664443
No 82
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.92 E-value=0.028 Score=49.94 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCCcceeeeEEeeecCCCCceEEEEEEEeecCCC---CCHHHHHHHHhcchhHHHHHHHHHH
Q 008769 4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN---FPAIFLERIIRSDLPVNLQALACRA 62 (554)
Q Consensus 4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~---~P~~lve~~~~~dlp~nL~Ai~~~a 62 (554)
+.|..++|.|.+++. +.+|.|+|++++.|.-. ||..++....++.+..-+.+||+++
T Consensus 84 ~~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 84 AGFVKGTARVTLEPD--GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred CceEEEEEEEEEEec--CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 348899999999997 35699999999996544 4899999999999999999999876
No 83
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=95.60 E-value=0.64 Score=46.91 Aligned_cols=169 Identities=10% Similarity=0.058 Sum_probs=108.4
Q ss_pred ccCCCceeecccccCCCCcccceEEE-eeeccccccCCceEEEEEEEEE-cCCHHHHHHHHhCcCcccccCcCCcEEEEE
Q 008769 127 DLNSKWGVFGQVCRLDRPCFVDEVHL-RRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKIL 204 (554)
Q Consensus 127 ~~~~~W~~~~~~~gi~~~~~~deV~l-rr~d~~~e~~g~~r~V~asI~I-~APpe~VWaVLTDyE~yPewiP~V~sSrVL 204 (554)
++...|+..-+..++ .+.- |+ +.+| ++.++...+. +++|+.|++++.|.+-=+.|=..+...+.+
T Consensus 26 ~~~~~We~~~~k~~~-------~i~~q~~-----~~~g-~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~i 92 (219)
T KOG2761|consen 26 DAGQGWELVMDKSTP-------SIWRQRR-----PKTG-LYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETI 92 (219)
T ss_pred CcccchhhhcccCCc-------eEEEEcc-----cCCC-CEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheee
Confidence 445699999999888 7666 42 3334 6665555555 699999999999999999999999999999
Q ss_pred Eec---CCEEEEEEEeccceeE-EEEE-EEEEEEEeecCCCeEEEEEEe--------cCCc--eeEEEEEEE----EcCC
Q 008769 205 SRE---NNKVRILQEGCKGLLY-MVLH-ARVVMDICEQHEQEISFEQVE--------GDFD--SFQGKWLFE----QLGS 265 (554)
Q Consensus 205 ~r~---g~~vrv~q~g~~gil~-~~~~-~rvvLdv~E~~~rrIsf~~ve--------Gdfr--~f~G~W~Le----plgd 265 (554)
+.. |+.+..|...+-.++. .-+. .+..++..+ ....|.-..+. +..+ .+.-.|.+. ..++
T Consensus 93 e~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~-k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~ 171 (219)
T KOG2761|consen 93 EEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDE-KDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDE 171 (219)
T ss_pred eecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCC-ceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCC
Confidence 876 4455445443321110 0011 111111100 01111111111 1122 567778777 3345
Q ss_pred CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769 266 HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 311 (554)
Q Consensus 266 G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~ 311 (554)
++|.+.|.....| ++.+|.++++..++.+++..++-+-..+.++
T Consensus 172 ~~~~~~~~~~~~p--~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y 215 (219)
T KOG2761|consen 172 QGCACEYLYFHNP--GGGIPKWVVKLAVRKGMPGAVKKMEKALLAY 215 (219)
T ss_pred CccEEEEEEEECC--CCCCcHHHHHHHHHhcChHHHHHHHHHHHhh
Confidence 5799999888888 4679999999999999999998886655544
No 84
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.42 Score=44.99 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=77.3
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcCCcEEEEEEecCCEE----EEEE-Eeccce-eEEEEEEEEEEEEeecCCCe
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV----RILQ-EGCKGL-LYMVLHARVVMDICEQHEQE 241 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~V~sSrVL~r~g~~v----rv~q-~g~~gi-l~~~~~~rvvLdv~E~~~rr 241 (554)
+.-..+|.||+|.||+.-+-.+++-.--|.-+ |+-+.+..+ ++.. ...-++ ..+.|.++.+..- +++..+
T Consensus 4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~-~d~~~~ 79 (153)
T COG4276 4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESG-FDNGSR 79 (153)
T ss_pred eEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEEEeeecc-cCCcce
Confidence 44567899999999999999998876666555 333333222 1110 011111 1247888765432 455667
Q ss_pred EEEEEEecCCcee--EEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHH
Q 008769 242 ISFEQVEGDFDSF--QGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNL 301 (554)
Q Consensus 242 Isf~~veGdfr~f--~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L 301 (554)
+.=.++.|+|..+ .-...|.+.+ |+|.+.=++.++++. +-+-..+..+...-.+..|+
T Consensus 80 FtDv~i~gPfp~~~WrHtH~F~~eg-g~TvliD~Vsye~p~-g~~~~~~g~~l~q~~l~~mF 139 (153)
T COG4276 80 FTDVCITGPFPALNWRHTHNFVDEG-GGTVLIDSVSYELPA-GTLTGMFGYRLTQLILDLMF 139 (153)
T ss_pred eeeeeecCCccceeeEEEeeeecCC-CcEEEEeeEEeeccC-cceechhhhhhHHHHHHHHH
Confidence 7667899999974 3444687765 579988888888753 32334444444444444444
No 85
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=94.99 E-value=0.1 Score=45.77 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=47.3
Q ss_pred CCcceeeeEEeeecCCCCceEEEEEEEeecC--CCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769 5 DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 5 DF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~--~~~P~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
-+..+.|.|+++|.+++ |+++|+.++.|. -+++..++...++.++...|..+++.||
T Consensus 81 ~~~~~~~~~~~~~~~~g--t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 81 GFTNGTGRWRFEPVGDG--TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp SSCEEEEEEEEEEETTT--EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEEEEcCCC--EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 35567999999997644 899999999973 3445677899999999999999999987
No 86
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=94.98 E-value=0.78 Score=43.40 Aligned_cols=138 Identities=20% Similarity=0.203 Sum_probs=76.9
Q ss_pred EEEEEEcCCHHHHHHHHhCcCcccccCcCC----cEEEEEEecCCEEEE--EEE-eccc-------eeEEEEEEEEEEEE
Q 008769 169 VASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRI--LQE-GCKG-------LLYMVLHARVVMDI 234 (554)
Q Consensus 169 ~asI~I~APpe~VWaVLTDyE~yPewiP~V----~sSrVL~r~g~~vrv--~q~-g~~g-------il~~~~~~rvvLdv 234 (554)
+.++.+++|+++||++++|-+-|..=+..+ ..+..+..+++++.+ .+. .... ++.-.+....+-..
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w 81 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW 81 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE
Confidence 567889999999999999976554443333 334444445555433 221 1111 11100111111001
Q ss_pred eecCCCe--EEEEE-EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 008769 235 CEQHEQE--ISFEQ-VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 309 (554)
Q Consensus 235 ~E~~~rr--Isf~~-veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAE 309 (554)
.-..+.. ..+.. +.|.--.+.|+-+|++.+ ++|++++..+++.+ .++-...+++.+...+...+..-.+.+.
T Consensus 82 ~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~~-~gt~~~~~g~v~v~--VPlvGgkiE~~v~~~~~~~~~~e~~~~~ 156 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIPGAPVSISGTMRLRPDG-GGTRLTVEGEVKVK--VPLVGGKIEKAVAENLRKLLEAEQEFTA 156 (159)
T ss_pred ecCCCCeEEEEEEEEecCceEEEEEEEEEecCC-CCEEEEEEEEEEEE--EccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001222 22221 225445889999999955 57999999998864 3444556777777777777776655544
No 87
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=94.87 E-value=0.085 Score=46.60 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=47.5
Q ss_pred CCCcceeeeEEeeecCCCCceEEEEEEEeecCC-CCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769 4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL-NFPAIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~-~~P~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
+++..+.+.|++++.+ +.+|.|+|+.++.+.+ .+.-.++...++++++.+|.++++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 78 APGISAVHRHEFEAKP-DGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred CCCEEEEEEEEEEEcC-CCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3445667899999865 3588999999988754 234578999999999999999999987
No 88
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=93.61 E-value=0.26 Score=48.52 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=51.8
Q ss_pred cceeeeEEeeecC-CCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 7 KKFEGKWSIKSGT-RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 7 ~~f~G~W~l~~~~-~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
+.|.|.|.|+|.+ +..+|..+|....-|.-++|..||.....+-+|.-|..|++.+.+
T Consensus 150 ~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 150 DDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred EEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 4589999999985 456788899999999999999999999999999999999998854
No 89
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=93.60 E-value=0.2 Score=49.30 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=51.4
Q ss_pred cceeeeEEeeecCCCCceEEEEEEEeecCCC-CCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 7 KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN-FPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 7 ~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~-~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
..+.|.|.|+|.+. ..|.++|.+.+-|+.. +|..||.+..++-.+.-|.+|++.|+.
T Consensus 157 ~~~~~~~~i~p~~~-~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 157 IIKYYGFVITPISP-TKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred EEecceEEEEEcCC-CCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999864 4589999999999998 999999999999999999999999974
No 90
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=93.46 E-value=0.13 Score=50.46 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=52.4
Q ss_pred ceeeeEEeeecCC-CCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769 8 KFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 65 (554)
Q Consensus 8 ~f~G~W~l~~~~~-~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~ 65 (554)
.+.|.|.|+|.+. ...|.++|.+.+-|+-++|..||...+.+-++.-|.++|+.++.+
T Consensus 150 ~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 150 NGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred ccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhhC
Confidence 3679999999874 367899999999999999999999999999999999999998753
No 91
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.41 E-value=0.15 Score=46.68 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=45.1
Q ss_pred CCCCcceeeeEEeeecCCCCceEEEEEEEeecCC-------CCCHHHHHHHHhcchhHHHHHHHHH
Q 008769 3 DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL-------NFPAIFLERIIRSDLPVNLQALACR 61 (554)
Q Consensus 3 ~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~-------~~P~~lve~~~~~dlp~nL~Ai~~~ 61 (554)
+|+|+. +|.|++++.+ .+|.|+|+.++.++- .|+-.|+....++-++..+.+++++
T Consensus 83 ~g~~~~-~~~~~~~~~~--~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 83 SGDLEG-VGRWTLAPDG--SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEeeeE-EEEEEEEEcC--CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 577774 8999999954 368999999999853 5666788888888899988888875
No 92
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.15 E-value=0.32 Score=48.00 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred ceeeeEEeeecC--CCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 8 KFEGKWSIKSGT--RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 8 ~f~G~W~l~~~~--~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
.|.|.|.|+|.. +..+|.++|....-|.-++|..||.....+-+|.-|..+++.|.+
T Consensus 148 ~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 148 DYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred EeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 489999999975 345788899999999999999999999999999999999999865
No 93
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=92.59 E-value=0.39 Score=47.48 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=53.8
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhcccc
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWN 69 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~~~~ 69 (554)
.+.|.|.|++.+ ..+|.++|.+.+-|+-++|..||-..+.+..|.-|..|++.|++..+..
T Consensus 147 ~~~~g~~i~p~~-~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~ 207 (222)
T cd08871 147 SLLTGYLIRPTG-PKGCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWK 207 (222)
T ss_pred EEccEEEEEECC-CCCEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 357889999986 4568999999999999999999999999999999999999998764443
No 94
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=92.57 E-value=0.41 Score=47.30 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=51.1
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
.|.|.|.|++.. ..+|.++|...+-|.-++|..||.....+-+|.-|..|++.|.+
T Consensus 151 ~~~~~~~i~p~~-~~~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 151 QYKQSLAIESDG-KKGSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEEEEEEEEeCC-CCceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 589999999864 35689999999999999999999999999999999999999864
No 95
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.74 E-value=0.53 Score=45.11 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=52.1
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 65 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~ 65 (554)
.|-+.|.|+|.+++. |.++|...+-|+-++|..++...+.+-+|.-+..+++.+++.
T Consensus 147 ~~~s~~~i~~~~~~~-~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 147 ILISGWVIRPLGDGR-TRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp EESEEEEEEEETTCE-EEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeEeEEEEEccCCC-ceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 477999999987655 899999999999999999999999999999999999998764
No 96
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.60 E-value=0.82 Score=38.43 Aligned_cols=53 Identities=25% Similarity=0.418 Sum_probs=42.8
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCC---CHHHHHHHHhcchhHHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACR 61 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~---P~~lve~~~~~dlp~nL~Ai~~~ 61 (554)
.+.|.|++++..+ .+|+|+|++++.++.++ +..+++..+++.++.-+.+++++
T Consensus 85 ~~~~~~~~~~~~~-~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 85 DGTGEWRLEPEGD-GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred ceeEEEEEEECCC-CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 7899999999754 47899999999998886 67778888887777777766653
No 97
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=91.12 E-value=0.66 Score=46.01 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=49.6
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
.+.|.|.+.+..+...|.++|.+.+-|+-++|..||...+.+-.-.-|.++|++++.
T Consensus 152 ~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 152 GPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888887645566789999999999999999999999998888999999998864
No 98
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=90.56 E-value=1.5 Score=43.66 Aligned_cols=53 Identities=8% Similarity=0.064 Sum_probs=39.9
Q ss_pred eeEE-EEEEEEcC-CCeEEEEEEE--EEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 008769 253 SFQG-KWLFEQLG-SHHTLLKYSV--ESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 307 (554)
Q Consensus 253 ~f~G-~W~Leplg-dG~TrVtY~v--~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~r 307 (554)
...| .|++.|.+ ++.+.|+|.. +.+| +|.||.|+.+..+-..+......|-+.
T Consensus 149 y~SgE~~~~~p~~~~~~~~vew~maT~sDp--GG~IP~wl~n~~~p~aI~~Dv~~fl~W 205 (208)
T cd08864 149 YASVEKISYLPDADGKSNKVEWIMATRSDA--GGNIPRWLTKLTIPKAIAKDVPLFLDW 205 (208)
T ss_pred EEEEEEEEEcCccCCCcCCEEEEEEEeeCC--CCcCcHHHHhccCchHHHHhHHHHHHH
Confidence 6678 88988875 5567889988 8887 578999999887777666655555443
No 99
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=90.54 E-value=0.88 Score=45.01 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=50.1
Q ss_pred ceeeeEEeeecCC-CCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769 8 KFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 8 ~f~G~W~l~~~~~-~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
.+.|.|.++|.+. ...|.++|.+.+-|+-++|..||...+.+-.-.-|.++|++++
T Consensus 151 ~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 151 NGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred eeccEEEEEECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 3579999999874 4679999999999999999999999999988899999999876
No 100
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.85 E-value=0.88 Score=41.11 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHH
Q 008769 1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 43 (554)
Q Consensus 1 mv~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lv 43 (554)
|++|.|+.+++.|++++.++ +|.++|++++.+++++-..++
T Consensus 80 ~~~G~~~~w~h~~~f~~~~~--gT~vt~~v~~~~p~g~lg~~~ 120 (137)
T cd07820 80 QVSGPFRSWRHTHRFEAIGG--GTLMTDRVEYRLPLGPLGRLA 120 (137)
T ss_pred eccCCchhCEEEEEEEECCC--ceEEEEEEEEeCCchhHHHHH
Confidence 46799999999999999764 699999999999654433333
No 101
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=89.01 E-value=0.9 Score=43.19 Aligned_cols=65 Identities=15% Similarity=0.357 Sum_probs=44.5
Q ss_pred CCCCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHhcc
Q 008769 2 VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 67 (554)
Q Consensus 2 v~GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~~~ 67 (554)
++|.|+...|.|+++|. +..+|.+.+.++...+=-+=-.++...-..=-.....|-.+||..++.
T Consensus 80 ~~GPFk~L~~~W~F~pl-~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~ 144 (146)
T COG2867 80 IDGPFKYLKGGWQFTPL-SEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKEVYG 144 (146)
T ss_pred hcCChhhhcCceEEEEC-CCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 68999999999999998 567789999998876533322222222222223445788888887654
No 102
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=88.90 E-value=11 Score=35.91 Aligned_cols=120 Identities=14% Similarity=0.233 Sum_probs=65.5
Q ss_pred CHHHHHHHHhC-cCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEecCCceeE
Q 008769 177 PVSEVWNVMTA-YETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQ 255 (554)
Q Consensus 177 Ppe~VWaVLTD-yE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~veGdfr~f~ 255 (554)
+.++||+=|.- .++=-.|+|.+.+|+|+++.++.+.-. .-+.+ ..+..++ +..++.++.|....|. .
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~-v~fg~---~~v~E~v----~~~~~~~V~f~~~~Gs----~ 86 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTRE-VTFGG---ATVRERV----TLYPPERVDFAQHDGS----S 86 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEE-EEETT---EEEEEEE----EEETTTEEEESSSBEE----E
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEE-EEECC---cEEEEEE----EEeCCcEEEEEcCCCC----E
Confidence 46789986655 444556999999999999987754222 11222 2344443 3457889999433332 2
Q ss_pred EEEEEEEcCCCeEEEEEEEEEEeccCccc---hH-----HHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 256 GKWLFEQLGSHHTLLKYSVESKMQKNSLL---SE-----AIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 256 G~W~LeplgdG~TrVtY~v~~eP~~gg~L---P~-----~Lver~vre~l~~~L~ALR~rAEr 310 (554)
-+-.++..++|.=.++|..+.... +.- ++ -....+.+.....+++.||+.+..
T Consensus 87 lt~~I~e~~~g~L~ltf~ye~~~p--~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~ 147 (149)
T PF08982_consen 87 LTNIISEPEPGDLFLTFTYEWRLP--GVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE 147 (149)
T ss_dssp EEEEEEEEETTEEEEEEEEEEE------S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEEEecCCCCcEEEEEEEEeccc--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222344444555556666655531 111 12 236777788888999999998764
No 103
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=87.59 E-value=1.3 Score=42.66 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=50.9
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 65 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~ 65 (554)
.+.|.|.|+|.+++. |.++|...+-|.-++|..++.....+-.+.-|..+++.+++.
T Consensus 147 ~~~~~~~i~p~~~~~-t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 147 NLPSGLLIEPLGNGP-SKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred EeceEEEEEECCCCC-eEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 478999999987654 899999999999999999999999999999999998877654
No 104
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=83.93 E-value=2.7 Score=36.69 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=42.6
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCC-CCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRL-NFPAIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~-~~P~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
...+.|++++.++ .+|+++++..+.+.. .+...+++..++++++..|.+|++.||
T Consensus 86 ~~~~~~~~~~~~~-~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 86 DGEHSFELEPLGD-GGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred eEEEEEEEEEcCC-CcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 4678899999643 468898887776532 223467999999999999999999886
No 105
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=83.07 E-value=3.3 Score=40.97 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=47.4
Q ss_pred CCCcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHH
Q 008769 4 GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 4 GDF~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
|....+.|.|...+.. ..+|.++|.+.+=|+-++|..+|...+.+-+-..|..+|+...
T Consensus 148 ~~~~~~g~~~~~~~~~-~~~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 148 GFNHPCGCFCEPVPGE-PDKTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EeeeccEEEEEECCCC-CCceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3344467777655543 4578999999999999999999999999888899999988764
No 106
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=82.69 E-value=3.9 Score=39.99 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=48.1
Q ss_pred ceeeeEEeeecC-CCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHH
Q 008769 8 KFEGKWSIKSGT-RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 62 (554)
Q Consensus 8 ~f~G~W~l~~~~-~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~a 62 (554)
.+.|-|.++|.+ +..+|.++|.+.+=|+-++|..+|-..+.+-+-.-+.+||+..
T Consensus 150 ~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 150 NHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred eecCEEEEEECCCCCCceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 356899999876 3467999999999999999999999999999999999998753
No 107
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=82.44 E-value=3.1 Score=37.94 Aligned_cols=54 Identities=7% Similarity=-0.020 Sum_probs=37.5
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCC---CHHHHHHHHhcchhHHHHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACRAE 63 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~---P~~lve~~~~~dlp~nL~Ai~~~ae 63 (554)
..+..|++.+ .+.+|.|+|++++...-.+ .-.+|....++-+..-+.+|++++|
T Consensus 89 ~~~~~~~l~~--~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 89 EATVTLRLSP--AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEEEEEEEEe--cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455788888 3457999999977654433 3344677777777777777887775
No 108
>COG2005 ModE N-terminal domain of molybdenum-binding protein [General function prediction only]
Probab=81.98 E-value=0.81 Score=42.76 Aligned_cols=47 Identities=26% Similarity=0.479 Sum_probs=38.8
Q ss_pred HHHhcChhhHHHHHHHhCCHHHHHHHcCchhhccccCCCCCCCChHhHHHHHHH
Q 008769 399 QLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 452 (554)
Q Consensus 399 ~Lr~~gr~dl~~ai~~~GG~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei~~ 452 (554)
.....||.-|.++|..+|-..+.|+.||++ || .-|+-++++++=+.+
T Consensus 15 ~~~g~g~~~LL~~I~etGSIs~AAk~~GiS--Yk-----~AW~~i~~~n~~~~~ 61 (130)
T COG2005 15 LRAGPGRIELLKAIAETGSISAAAKAAGIS--YK-----SAWDYIKALNRLLGE 61 (130)
T ss_pred cccCchHHHHHHHHHHhCCHHHHHHHcCCC--HH-----HHHHHHHHHHHHhCC
Confidence 345689999999999999999999999999 74 568877777764444
No 109
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=81.68 E-value=2.2 Score=41.70 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=43.9
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~ 60 (554)
.+.|-|.|+|.. ..+|.++|.+.+-|+=++|.-| .+....=||.+|..||.
T Consensus 142 ~~~~g~~i~p~~-~~~t~vty~~~~Dp~G~iP~wl-~N~~~~~~~~~~~~l~~ 192 (197)
T cd08869 142 VLASRYLIEPCG-SGKSRVTHICRVDLRGRSPEWY-NKVYGHLCARELLRIRD 192 (197)
T ss_pred EEeeeEEEEECC-CCCeEEEEEEEECCCCCCCcee-ecchHhHHHHHHHHHHh
Confidence 367999999975 3578999999999999999888 66777889999999886
No 110
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=81.28 E-value=3.2 Score=42.08 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=47.5
Q ss_pred eeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHHh
Q 008769 11 GKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 65 (554)
Q Consensus 11 G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~~ 65 (554)
|.|.+.+. ..+|.++|...+-|.-++|.-+|...-++..|.-|..+.......
T Consensus 175 g~~~~t~~--~~~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 175 GNQEITRD--NILCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred CcccccCC--CCeEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHHh
Confidence 77888882 558999999999999999999999999999999999998887653
No 111
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=78.34 E-value=6.7 Score=36.44 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=40.7
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~ 60 (554)
.+.|.|.+++. +..+|.++|.+.+-|+-++|..++...+. +.+..+....+
T Consensus 139 ~~~~~~~i~~~-~~~~~~vt~~~~~D~~g~iP~~~~~~~~~-~~~~~~~~~~~ 189 (193)
T cd00177 139 IKLSGWIIEPL-DPGKTKVTYVLQVDPKGSIPKSLVNSAAK-KQLASFLKDLR 189 (193)
T ss_pred EEccEEEEEEC-CCCCEEEEEEEeeCCCCCccHHHHHhhhh-hccHHHHHHHH
Confidence 34688999999 56779999999999999999999999997 44444444443
No 112
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=77.87 E-value=65 Score=30.63 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=54.2
Q ss_pred CCHHHHHHHH-hCcCcccccCcCCcEEEEEEecCCEEEEEEEeccceeEEEEEEEEEEEEeecCCCeEEEEEEe-cCCce
Q 008769 176 APVSEVWNVM-TAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDS 253 (554)
Q Consensus 176 APpe~VWaVL-TDyE~yPewiP~V~sSrVL~r~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~rrIsf~~ve-Gdfr~ 253 (554)
-+.+++|+=| .-.++=-.|+|.+.+|+|+++.++.+ .+..-+.. ...... ++..++.++.|.+.. |.
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l-~Rel~f~~---~~v~e~----vt~~~~~~v~f~~~~~g~--- 85 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVL-ERELTFGP---AKIRET----VTLEPPSRVHFLQADAGG--- 85 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCCEE-EEEEEECC---ceEEEE----EEecCCcEEEEEecCCCC---
Confidence 3467999855 45666667999999999999887643 12211221 123333 334578899998776 31
Q ss_pred eEEEEEEEEcCCCeEEEEEEEEEEe
Q 008769 254 FQGKWLFEQLGSHHTLLKYSVESKM 278 (554)
Q Consensus 254 f~G~W~LeplgdG~TrVtY~v~~eP 278 (554)
.-.=.++.-.+|.=.|+|..+...
T Consensus 86 -~l~~~iee~~~g~L~lrf~ye~~~ 109 (141)
T cd08863 86 -TLTNTIEEPEDGALYLRFVYETTL 109 (141)
T ss_pred -eEEEEeccCCCCcEEEEEEEEecC
Confidence 122234433455555666665543
No 113
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=76.83 E-value=6.9 Score=34.30 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=44.3
Q ss_pred CcceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHHHHH
Q 008769 6 FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 64 (554)
Q Consensus 6 F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ae~ 64 (554)
+...++.|++++.+ .+|.|+|+.+..+.. .|-..+-.-+++..+..|..|++.||+
T Consensus 84 ~~~~~~~~~~~~~~--~~T~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 84 GPETTVTVTLEETG--GGTRLTLTHSGFPEE-DAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred CCceEEEEEEEECC--CCEEEEEEEEccChH-hHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 56778899999986 469999999998873 224456667778899999999998874
No 114
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=73.41 E-value=6.4 Score=34.17 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHhcChhhHHHHHHHhCCH-HHHHHHcCch
Q 008769 371 QTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGF-RRMASLMNLA 428 (554)
Q Consensus 371 ~~~~~~l~~el~~~~~~~g~~~~mP~~~~Lr~~gr~dl~~ai~~~GG~-~~va~~l~l~ 428 (554)
|-.+++-..=+.+|+..+| +||.++|.+++-.+|...|..+|=. .+.....++.
T Consensus 8 q~s~~~a~~~~~~l~~~~g----~pt~~~l~~~~~~el~~~i~~~G~~~~ka~~i~~~a 62 (108)
T PF00730_consen 8 QTSIKAARKIYRRLFERYG----FPTPEALAEASEEELRELIRPLGFSRRKAKYIIELA 62 (108)
T ss_dssp TS-HHHHHHHHHHHHHHHS----CSSHHHHHCSHHHHHHHHHTTSTSHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhc----CCCHHHHHhCCHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 3445666667788888888 9999999999999999999997766 3333333333
No 115
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=70.45 E-value=89 Score=29.58 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=55.7
Q ss_pred cCCEEEEEEEeccceeEEEEEEEEEEEEeecCCC-e---EEEEEEec--C------Cc-eeEEEEEEEEcCCCeEEEEEE
Q 008769 207 ENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ-E---ISFEQVEG--D------FD-SFQGKWLFEQLGSHHTLLKYS 273 (554)
Q Consensus 207 ~g~~vrv~q~g~~gil~~~~~~rvvLdv~E~~~r-r---Isf~~veG--d------fr-~f~G~W~LeplgdG~TrVtY~ 273 (554)
.+++.++... .-.++.+.....+.+++....+. . ..+++ .| . |. .+.|.-...+ .++.|.|.++
T Consensus 28 ~~~~yr~~~~-~~~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l-~G~~~~~~~~~f~l~~~~~l~~~~-~~~~t~l~~~ 104 (158)
T PF09366_consen 28 GDNTYRLKMR-PFQFFGFEVEPVVDLRVWPQDDGLTIRSLDCEL-RGSPLVEQNDGFSLDLQASLYPEE-PPGRTRLEGD 104 (158)
T ss_pred CCCeEEEEEc-CccEEEEEEEEEEEEEEEEcCCCeEEEEEEEEE-eCCCccccCCcEEEEEEEEEEEec-CCCceEEEEE
Confidence 3455455433 33345566666676766544443 1 12222 23 1 11 4444444443 4457888887
Q ss_pred EEEEec-----cCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 008769 274 VESKMQ-----KNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 311 (554)
Q Consensus 274 v~~eP~-----~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~ 311 (554)
+++... +-.++|..+++..-...+...+..++.++...
T Consensus 105 ~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~~~ 147 (158)
T PF09366_consen 105 ADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFLQQ 147 (158)
T ss_pred EEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776531 11236777777777777777777777776543
No 116
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=69.32 E-value=2.2 Score=33.75 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred hhHHHHHHHhCCHHHHHHHcCchhhccccCCCCCCCChHhHHHHH
Q 008769 406 VDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEI 450 (554)
Q Consensus 406 ~dl~~ai~~~GG~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei 450 (554)
..+..+|..+|.+.++|+.||++. ...|..+.+|++++
T Consensus 4 l~~f~~v~~~gs~~~AA~~l~is~-------~~vs~~i~~LE~~l 41 (60)
T PF00126_consen 4 LRYFLAVAETGSISAAAEELGISQ-------SAVSRQIKQLEEEL 41 (60)
T ss_dssp HHHHHHHHHHSSHHHHHHHCTSSH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHhhccc-------hHHHHHHHHHHHHh
Confidence 446779999999999999999993 34555555565554
No 117
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=68.50 E-value=12 Score=31.77 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCCCCHHHHHhcChhhH---HHHHHHhCCHHHHHHH
Q 008769 372 TNIEVLKAELLEFISKHGQE-GFMPMRKQLRKHGRVDV---EKAITRMGGFRRMASL 424 (554)
Q Consensus 372 ~~~~~l~~el~~~~~~~g~~-~~mP~~~~Lr~~gr~dl---~~ai~~~GG~~~va~~ 424 (554)
++-+.--..|.+|+...|.. ...|. ......|| .++|..+||+.+|.+.
T Consensus 5 ~~~~~F~~~L~~f~~~~g~~~~~~P~----i~g~~vDL~~Ly~~V~~~GG~~~V~~~ 57 (92)
T PF01388_consen 5 REREQFLEQLREFHESRGTPIDRPPV----IGGKPVDLYKLYKAVMKRGGFDKVTKN 57 (92)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSS-SE----ETTSE-SHHHHHHHHHHHTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCc----CCCEeCcHHHHHHHHHhCcCcccCccc
Confidence 44556677899999999977 44555 44455555 5599999998776544
No 118
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=66.66 E-value=32 Score=35.20 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=31.4
Q ss_pred EEEEEEEcCCHHHHHHHHhCcCcccccCcC-CcEEEEEE
Q 008769 168 VVASITVKAPVSEVWNVMTAYETLPEIVPN-LAISKILS 205 (554)
Q Consensus 168 V~asI~I~APpe~VWaVLTDyE~yPewiP~-V~sSrVL~ 205 (554)
-+++..|...+..+-++|.|.+.|.+++|. |.+++++.
T Consensus 62 SR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~ 100 (229)
T cd08875 62 SRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQ 100 (229)
T ss_pred EeeeEEEecCHHHHHHHHhChhhhhhhhhhhcceeeEEE
Confidence 467778889999999999999999997776 56666664
No 119
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=62.17 E-value=31 Score=30.67 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=46.6
Q ss_pred CCCeEEEEEEecCCceeEEEE--EEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 008769 238 HEQEISFEQVEGDFDSFQGKW--LFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310 (554)
Q Consensus 238 ~~rrIsf~~veGdfr~f~G~W--~LeplgdG~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr 310 (554)
|.++++|..--.--..+.|.- .++++.++.|++.....|.+-..-++|. +.+-+.....++..++|++||+
T Consensus 20 P~reL~W~~~~~~~~l~~~~~~~~le~~~~~~t~~~q~e~F~Gvlv~fv~~--lr~~~~~~f~~~n~alr~raE~ 92 (93)
T COG4891 20 PLRELTWLGNVRFPGLLDGERYFELEALWGGRTRFAQGESFSGVLVPFVSE--LRRGLTASFENMNPALRARAEA 92 (93)
T ss_pred cchheeeecccccceEEeeEEEEEEeecCCccceeeccceecceeeccchh--hhccchhhhhhhCHHHHhhhhc
Confidence 567898863221111344444 6778888889998888887421111233 5667777888899999999986
No 120
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=60.66 E-value=8.3 Score=33.19 Aligned_cols=44 Identities=16% Similarity=0.362 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhCCCC-CCCCHHHHHhcChhhH---HHHHHHhCCHHHH
Q 008769 374 IEVLKAELLEFISKHGQEG-FMPMRKQLRKHGRVDV---EKAITRMGGFRRM 421 (554)
Q Consensus 374 ~~~l~~el~~~~~~~g~~~-~mP~~~~Lr~~gr~dl---~~ai~~~GG~~~v 421 (554)
.+.--..|.+|+...|..- ..|. +.....|| ..+|.++||+.+|
T Consensus 3 ~~~F~~~L~~F~~~~g~~~~~~P~----i~g~~vdL~~Ly~~V~~~GG~~~v 50 (93)
T smart00501 3 RVLFLDRLYKFMEERGSPLKKIPV----IGGKPLDLYRLYRLVQERGGYDQV 50 (93)
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCe----ECCEeCcHHHHHHHHHHccCHHHH
Confidence 4556788999999988652 3333 34455555 5699999998754
No 121
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=59.81 E-value=21 Score=35.64 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=37.9
Q ss_pred ceeeeEEeeecC--CCCceEEEEEEEeecC-CCCCHHHHHHHHhcchhHHHHHH
Q 008769 8 KFEGKWSIKSGT--RSSTTTLSYEVNVIPR-LNFPAIFLERIIRSDLPVNLQAL 58 (554)
Q Consensus 8 ~f~G~W~l~~~~--~~~~t~L~Y~~~v~P~-~~~P~~lve~~~~~dlp~nL~Ai 58 (554)
.+.|.|.|+|.+ +...|.|+|.+.+-|. -.+|..|+-... .|-|..+.-+
T Consensus 147 ~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~~-~~~p~~~~~~ 199 (205)
T cd08874 147 ILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSSLS-KRQPLVIARL 199 (205)
T ss_pred eEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhHHH-HhccHHHHHH
Confidence 478999999973 2346899999999999 899999987654 3455554443
No 122
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=58.40 E-value=17 Score=36.30 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=38.3
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~ 60 (554)
.+.|.|.|+|... .+|.|+|...+-|+=.+|.-++-. ...=+...|..||.
T Consensus 149 ~~~~~w~i~P~g~-g~t~vtyi~~~DPgG~iP~W~~N~-~g~~~~~~~~~~r~ 199 (204)
T cd08908 149 VLLSRYLIEPCGS-GKSKLTYMCRIDLRGHMPEWYTKS-FGHLCAAEVVKIRD 199 (204)
T ss_pred EEeeEEEEEECCC-CcEEEEEEEEeCCCCCCcHHHHhh-HHHHHHHHHHHHHh
Confidence 4799999999743 568999999999999999988743 33334455555553
No 123
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=56.26 E-value=6 Score=34.95 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=30.2
Q ss_pred hHHHHHHHhCCHHHHHHHcCchhhccccCCCCCCCChHhHHHHHHH
Q 008769 407 DVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 452 (554)
Q Consensus 407 dl~~ai~~~GG~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei~~ 452 (554)
-+..+|.++|.+.++|+.||++. .-=|..+..|++++..
T Consensus 8 ~~~~av~~~gSis~AA~~L~iS~-------stvs~~I~~LE~~lg~ 46 (99)
T TIGR00637 8 ALLKAIARMGSISQAAKDAGISY-------KSAWDYIRAMNNLSGE 46 (99)
T ss_pred HHHHHHHHhCCHHHHHHHHCCCH-------HHHHHHHHHHHHHhCC
Confidence 36789999999999999999993 3456666666666554
No 124
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=56.21 E-value=5.7 Score=33.64 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=11.4
Q ss_pred CcceeeeEEeeec
Q 008769 6 FKKFEGKWSIKSG 18 (554)
Q Consensus 6 F~~f~G~W~l~~~ 18 (554)
-|.|||+|.|+|+
T Consensus 30 MK~FEGswKVepl 42 (74)
T PF02713_consen 30 MKVFEGSWKVEPL 42 (74)
T ss_pred eeeecceeEEEee
Confidence 4789999999994
No 125
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=52.66 E-value=6.3 Score=40.60 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=36.0
Q ss_pred hcChhhHHHHHHHhCCHHHHHHHcCchhhccccCCCCCCCChHhHHHHHHH
Q 008769 402 KHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 452 (554)
Q Consensus 402 ~~gr~dl~~ai~~~GG~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei~~ 452 (554)
..++..+..+|..+|.+.++|++||++ .+.-|.-+.+|++++-.
T Consensus 18 ~~~~l~~l~~v~~~gS~s~AA~~l~~s-------~~a~s~~i~~le~~lg~ 61 (263)
T PRK10676 18 DPRRISLLKQIALTGSISQGAKLAGIS-------YKSAWDAINEMNQLSEH 61 (263)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHhCCC-------HHHHHHHHHHHHHHhCC
Confidence 345677889999999999999999999 34578888888887654
No 126
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=51.57 E-value=14 Score=31.88 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=35.1
Q ss_pred CHHHHHHHcCchhhccccCCCCCCCChHhHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 008769 417 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 483 (554)
Q Consensus 417 G~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei~~f~~~~----g~~~~~mPs~~~l~~agR~Dl~~ai~ 483 (554)
.|..+|.+||++-+==.+--. ++-.++.+........| |-+..+=--...|.++||.||+..|+
T Consensus 17 dW~~LA~eLg~s~~dI~~i~~---e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~~~ 84 (84)
T cd08803 17 SWTELARELNFSVDEINQIRV---ENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLE 84 (84)
T ss_pred cHHHHHHHcCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHhcC
Confidence 588999999998430000000 01122333333333333 44433333457789999999999874
No 127
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=49.78 E-value=44 Score=33.50 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=38.7
Q ss_pred ceeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHH
Q 008769 8 KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60 (554)
Q Consensus 8 ~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~ 60 (554)
.+.|.|.|+|.+.+ +|+|+|...+=|+-++|.-++ +.+..=+...|..||.
T Consensus 150 ~~~~gylI~P~~~g-~trvt~i~~vDpkG~~P~W~~-n~~g~~~~~~~~~~r~ 200 (205)
T cd08909 150 VLDSQYLIEPCGSG-KSRLTHICRVDLKGHSPEWYN-KGFGHLCAAEAARIRN 200 (205)
T ss_pred EEcCcEEEEECCCC-CEEEEEEEEecCCCCChHHHH-HhHHHHHHHHHHHHHh
Confidence 35789999998654 689999999999999998765 4444445556666654
No 128
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=46.36 E-value=16 Score=29.04 Aligned_cols=42 Identities=33% Similarity=0.489 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHHHhcChhhHHHHHHHhCCHHHHHHHcCch
Q 008769 374 IEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLA 428 (554)
Q Consensus 374 ~~~l~~el~~~~~~~g~~~~mP~~~~Lr~~gr~dl~~ai~~~GG~~~va~~l~l~ 428 (554)
|++.++||+.|++.....-.+|. |-.++|--|++ +|+.+||.
T Consensus 1 ~~~i~~~i~~F~~~~~~~~~fpp---m~~~~R~~vH~----------lA~~~~L~ 42 (58)
T cd02646 1 IEDIKDEIEAFLLDSRDSLSFPP---MDKHGRKTIHK----------LANCYNLK 42 (58)
T ss_pred ChHHHHHHHHHHhCCCceEecCC---CCHHHHHHHHH----------HHHHcCCc
Confidence 47889999999999888888888 45677776665 78888887
No 129
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=44.91 E-value=64 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=35.9
Q ss_pred eeEEeeecCCC-CceEEEEEEEeecCCCCCHHHHHHHHhcchh
Q 008769 11 GKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERIIRSDLP 52 (554)
Q Consensus 11 G~W~l~~~~~~-~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp 52 (554)
|-|.+.|.++. ..|.|+|-+..-|+-++|..+|...+.+-+-
T Consensus 151 ~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~ 193 (204)
T cd08904 151 CGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEKTMPTNLV 193 (204)
T ss_pred cEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHHHhHHHHH
Confidence 77999998765 5699999999999999999999988766543
No 130
>PRK01905 DNA-binding protein Fis; Provisional
Probab=44.16 E-value=64 Score=27.09 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=34.4
Q ss_pred hHHHHHHHHH----HHh-CCCCCCCCCHHHHHHhchHHHHHHHHHhcC-HHHHHHHhccccc
Q 008769 445 NLEEEISRFQ----RSW-GMDPSFMPSRKSFERAGRYDIARALEKWGG-LHEVSRLLSLKLR 500 (554)
Q Consensus 445 ~l~~ei~~f~----~~~-g~~~~~mPs~~~l~~agR~Dl~~ai~~~GG-~~~va~~l~~~~~ 500 (554)
|.++||++-+ .+. |..|+ =|....+.+..+.=|.++++.+|| ...+|+.||+.-+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~E~~~i~~aL~~~~gn~s~aAr~LGIsrs 65 (77)
T PRK01905 5 NIEQCIRDSLDQYFRDLDGSNPH-DVYDMVLSCVEKPLLEVVMEQAGGNQSLAAEYLGINRN 65 (77)
T ss_pred cHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHH
Confidence 5666766633 332 22221 112334555566668899999887 8899999998543
No 131
>PF13309 HTH_22: HTH domain
Probab=42.23 E-value=21 Score=29.09 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCHHHHHHHhcc
Q 008769 445 NLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSL 497 (554)
Q Consensus 445 ~l~~ei~~f~~~~g~~~~~mPs~~~l~~agR~Dl~~ai~~~GG~~~va~~l~~ 497 (554)
.+++-|..++...|.++..|+...-++=...-|=..+.+.=|.+..||+.||.
T Consensus 2 ~i~~~i~~~~~~~~~~~~~l~~~~k~~iV~~L~~~G~F~lKgav~~vA~~L~i 54 (64)
T PF13309_consen 2 LIESIIEEVIAEVGKPPSRLSKEEKKEIVRQLYEKGIFLLKGAVEYVAEKLGI 54 (64)
T ss_pred hHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHCCCcccCcHHHHHHHHHCC
Confidence 45667778888899999888875433222222222222223456789999986
No 132
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=42.19 E-value=81 Score=31.79 Aligned_cols=51 Identities=16% Similarity=0.060 Sum_probs=43.1
Q ss_pred eeEEeeecCCC-CceEEEEEEEeecCCCCCHHHHHHHHhcchhHHHHHHHHH
Q 008769 11 GKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACR 61 (554)
Q Consensus 11 G~W~l~~~~~~-~~t~L~Y~~~v~P~~~~P~~lve~~~~~dlp~nL~Ai~~~ 61 (554)
|-|-+.|.+++ ..|.|++-++.-++-++|-.+|.+.+-+-+-.=...+|++
T Consensus 149 ~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 149 CGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred cEEEEEECCCCCCceEEEEEEEecCCCCccHHHHHHHhhHHHHHHHHHHHHh
Confidence 56999998865 6788999999999999999999999988877666666654
No 133
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=41.48 E-value=28 Score=29.91 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCHHHHH
Q 008769 445 NLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVS 492 (554)
Q Consensus 445 ~l~~ei~~f~~~~g~~~~~mPs~~~l~~agR~Dl~~ai~~~GG~~~va 492 (554)
+--+.|..|.+.-|.+....|.. +=....=|.|.++|.+.||+.+|.
T Consensus 5 ~F~~~L~~F~~~~g~~~~~~P~i-~g~~vdL~~Ly~~V~~~GG~~~v~ 51 (93)
T smart00501 5 LFLDRLYKFMEERGSPLKKIPVI-GGKPLDLYRLYRLVQERGGYDQVT 51 (93)
T ss_pred HHHHHHHHHHHHcCCcCCcCCeE-CCEeCcHHHHHHHHHHccCHHHHc
Confidence 33467888998888765555654 223344478999999999998754
No 134
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=40.00 E-value=1.8e+02 Score=26.49 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=32.2
Q ss_pred cCCCeEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEec
Q 008769 237 QHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ 279 (554)
Q Consensus 237 ~~~rrIsf~~veGdfr~f~G~W~LeplgdG~TrVtY~v~~eP~ 279 (554)
.+++...+... .+...+.-++.++++++|.|.|+|.-++.+.
T Consensus 62 ~~~~~Y~~~~~-s~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 62 EPNKRYAATFS-SSRGTFTISYEIEPLDDGSIEVTYEEEYESK 103 (120)
T ss_pred cCCCEEEEEEE-ecCCCEEEEEEEEECCCCcEEEEEEEEEccC
Confidence 35666655543 3444678899999999999999999999864
No 135
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=38.67 E-value=82 Score=24.13 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=28.7
Q ss_pred cCCCCCCCChHhHHHHHHHHHHHhCCCCCCCCCHHHHH
Q 008769 434 RKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFE 471 (554)
Q Consensus 434 r~p~gyw~~~~~l~~ei~~f~~~~g~~~~~mPs~~~l~ 471 (554)
-...|+|+ +.+++.|+.||+..||.+.-.+....+.
T Consensus 20 ~~~~g~~~--~~t~~Av~~fQ~~~gL~~tG~~d~~T~~ 55 (57)
T PF01471_consen 20 GPVDGIFD--PETREAVKAFQKANGLPVTGVVDPETWE 55 (57)
T ss_dssp SSTTSBSH--HHHHHHHHHHHHHTTS-SSSSBCHHHHH
T ss_pred CCCCCCcC--HHHHHHHHHHHHHcCcCCCCccCHHHHh
Confidence 46789999 9999999999999999987666655543
No 136
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=38.24 E-value=19 Score=31.15 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=37.6
Q ss_pred CHHHHHHHcCchhhccccCCCCCCCChHhHHHHHHHHHHH----hCCCCCCCCCHHHHHHhchHHHHHHHH
Q 008769 417 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRS----WGMDPSFMPSRKSFERAGRYDIARALE 483 (554)
Q Consensus 417 G~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei~~f~~~----~g~~~~~mPs~~~l~~agR~Dl~~ai~ 483 (554)
.|..+|.+||++.+-=.+--. +|-.++.+........ .|-+...-.-...|..+||.||++.|+
T Consensus 17 dW~~Lar~L~vs~~dI~~I~~---e~p~~l~~Q~~~~L~~W~~r~g~~At~~~L~~AL~~i~R~div~~~~ 84 (84)
T cd08805 17 SWAELARELQFSVEDINRIRV---ENPNSLLEQSTALLNLWVDREGENAKMSPLYPALYSIDRLTIVNMLE 84 (84)
T ss_pred hHHHHHHHcCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhcCccchHHHHHHHHHHCChHHHHHhhC
Confidence 477899999998641000000 1112344444444333 355544445578899999999999874
No 137
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=37.35 E-value=35 Score=29.31 Aligned_cols=63 Identities=17% Similarity=0.332 Sum_probs=34.8
Q ss_pred HHHHHHHcCchhhccccCCCCCCCChHhHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 008769 418 FRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 483 (554)
Q Consensus 418 ~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei~~f~~~~----g~~~~~mPs~~~l~~agR~Dl~~ai~ 483 (554)
|..+|.+||++-+==.+--. +|.+++++........| |-+..+=--...|...+|.||++.++
T Consensus 18 Wk~LAr~Lg~se~dI~~i~~---~~~~~~~eq~~~mL~~W~~r~g~~At~~~L~~aL~~i~r~Div~~~~ 84 (84)
T cd08804 18 WTELARELDFTEEQIHQIRI---ENPNSLQDQSHALLKYWLERDGKHATDTNLMKCLTKINRMDIVHLME 84 (84)
T ss_pred HHHHHHHcCCCHHHHHHHHH---HCcccHHHHHHHHHHHHHHccCCCchHHHHHHHHHHcChHHHHHHhC
Confidence 88899999998431000000 11233444444444444 43322222345678999999999864
No 138
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=36.08 E-value=48 Score=24.51 Aligned_cols=31 Identities=32% Similarity=0.495 Sum_probs=23.0
Q ss_pred HHHhchHHHHHHHHHhc-CHHHHHHHhccccc
Q 008769 470 FERAGRYDIARALEKWG-GLHEVSRLLSLKLR 500 (554)
Q Consensus 470 l~~agR~Dl~~ai~~~G-G~~~va~~l~~~~~ 500 (554)
+++.-+.=|..||+++| -...+|+.||+.-+
T Consensus 2 l~~~E~~~i~~aL~~~~gn~~~aA~~Lgisr~ 33 (42)
T PF02954_consen 2 LEEFEKQLIRQALERCGGNVSKAARLLGISRR 33 (42)
T ss_dssp HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHH
Confidence 45556777999999977 57789999998643
No 139
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=33.03 E-value=43 Score=25.18 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=17.5
Q ss_pred hHHHHHHHhC-C-HHHHHHHcC
Q 008769 407 DVEKAITRMG-G-FRRMASLMN 426 (554)
Q Consensus 407 dl~~ai~~~G-G-~~~va~~l~ 426 (554)
-|.+||..|| + |.+||+.|+
T Consensus 11 ~l~~~v~~~g~~~W~~Ia~~~~ 32 (48)
T PF00249_consen 11 KLLEAVKKYGKDNWKKIAKRMP 32 (48)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHS
T ss_pred HHHHHHHHhCCcHHHHHHHHcC
Confidence 4778999998 7 999999998
No 140
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=32.03 E-value=43 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=18.3
Q ss_pred HHHHHHhcCHHHHHHHhccccc
Q 008769 479 ARALEKWGGLHEVSRLLSLKLR 500 (554)
Q Consensus 479 ~~ai~~~GG~~~va~~l~~~~~ 500 (554)
..||..+||..++|+.||....
T Consensus 3 ~~aI~~~G~~~~lAkalGVs~~ 24 (60)
T PF14549_consen 3 KDAIKYFGGQSKLAKALGVSPQ 24 (60)
T ss_dssp HHHHHHHSSHHHHHHHHTS-HH
T ss_pred HHHHHHHCCHHHHHHHHCCCHH
Confidence 3689999999999999998643
No 141
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=31.27 E-value=38 Score=28.71 Aligned_cols=60 Identities=20% Similarity=0.397 Sum_probs=33.3
Q ss_pred CHHHHHHHcCchhh----ccccCCCCCCCChHhHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 008769 417 GFRRMASLMNLALA----YKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 483 (554)
Q Consensus 417 G~~~va~~l~l~~a----~~~r~p~gyw~~~~~l~~ei~~f~~~~----g~~~~~mPs~~~l~~agR~Dl~~ai~ 483 (554)
.|..+|.+||++-. .+...| .++.+........| |-...+=--...|+++||.||+..|+
T Consensus 17 dW~~LAr~Lg~~~~dI~~i~~~~~-------~~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~~~~ 84 (84)
T cd08317 17 DWPQLARELGVSETDIDLIKAENP-------NSLAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVEKCE 84 (84)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHHHhC
Confidence 57889999998842 000011 11222233333333 43333333457788999999998764
No 142
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=30.98 E-value=1.1e+02 Score=34.66 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=42.2
Q ss_pred CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCC
Q 008769 266 HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDN 315 (554)
Q Consensus 266 G~TrVtY~v~~eP~~gg~LP~~Lver~vre~l~~~L~ALR~rAEr~~~~~ 315 (554)
-.|.++|...+.| |||.|...+..+.++..+..|+.|-.++.....++
T Consensus 560 ~~ckityvs~vnp--ggwapasalravykreypkflkrft~yv~~~~kgk 607 (611)
T KOG1739|consen 560 ILCKITYVSNVNP--GGWAPASALRAVYKREYPKFLKRFTSYVQEKTKGK 607 (611)
T ss_pred eeEEEEEEeeeCC--CCcccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 4799999999988 68999999999999999999999999887765554
No 143
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=29.20 E-value=32 Score=34.52 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.9
Q ss_pred hHHHHHHHhCCHHHHHHHcCchh
Q 008769 407 DVEKAITRMGGFRRMASLMNLAL 429 (554)
Q Consensus 407 dl~~ai~~~GG~~~va~~l~l~~ 429 (554)
....+|.++|.|.++|++||++.
T Consensus 7 ~~f~~v~~~gs~s~AA~~L~isq 29 (275)
T PRK03601 7 KTFLEVSRTRHFGRAAESLYLTQ 29 (275)
T ss_pred HHHHHHHHcCCHHHHHHHhCCCh
Confidence 34678999999999999999983
No 144
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=28.66 E-value=90 Score=32.02 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=31.5
Q ss_pred eeeeEEeeecCCCCceEEEEEEEeecCCCCCHHHHHHHHh
Q 008769 9 FEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIR 48 (554)
Q Consensus 9 f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~~P~~lve~~~~ 48 (554)
+.|.|.|.+.+ ...|.++|...+-|- .+|..++.....
T Consensus 185 ~~ggw~i~p~~-~~~t~vtY~~~~dPG-~LP~~~~N~~~~ 222 (240)
T cd08913 185 LCSGFCIWEES-DQLTKVSYYNQATPG-VLPYISTDIAGL 222 (240)
T ss_pred cccEEEEEECC-CCcEEEEEEEEeCCc-cccHHHhhhhhh
Confidence 78999999864 345789999999998 999999876554
No 145
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=26.15 E-value=47 Score=33.09 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.4
Q ss_pred HHHHHHHhCCHHHHHHHcCchh
Q 008769 408 VEKAITRMGGFRRMASLMNLAL 429 (554)
Q Consensus 408 l~~ai~~~GG~~~va~~l~l~~ 429 (554)
...+|.++|+|.++|++||++.
T Consensus 10 ~f~~v~e~~s~t~AA~~L~isq 31 (290)
T PRK10837 10 VFAEVLKSGSTTQASVMLALSQ 31 (290)
T ss_pred HHHHHHHcCCHHHHHHHhCCCc
Confidence 4678999999999999999983
No 146
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=25.76 E-value=89 Score=26.47 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCHHHHHHH
Q 008769 445 NLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRL 494 (554)
Q Consensus 445 ~l~~ei~~f~~~~g~~~~~mPs~~~l~~agR~Dl~~ai~~~GG~~~va~~ 494 (554)
+--+.|.+|.+.-|.+...-|.. .=....=|.|.++|..+||+.+|...
T Consensus 9 ~F~~~L~~f~~~~g~~~~~~P~i-~g~~vDL~~Ly~~V~~~GG~~~V~~~ 57 (92)
T PF01388_consen 9 QFLEQLREFHESRGTPIDRPPVI-GGKPVDLYKLYKAVMKRGGFDKVTKN 57 (92)
T ss_dssp HHHHHHHHHHHHTTSSSSS-SEE-TTSE-SHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCcC-CCEeCcHHHHHHHHHhCcCcccCccc
Confidence 33456888999888876556652 22233348899999999999876443
No 147
>PRK01905 DNA-binding protein Fis; Provisional
Probab=24.93 E-value=1.6e+02 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=25.3
Q ss_pred HHHHHhcChhhHHHHHHHhCC-HHHHHHHcCchh
Q 008769 397 RKQLRKHGRVDVEKAITRMGG-FRRMASLMNLAL 429 (554)
Q Consensus 397 ~~~Lr~~gr~dl~~ai~~~GG-~~~va~~l~l~~ 429 (554)
...+....+.=+..++..+|| ..++|++||++.
T Consensus 31 ~~~l~~~E~~~i~~aL~~~~gn~s~aAr~LGIsr 64 (77)
T PRK01905 31 DMVLSCVEKPLLEVVMEQAGGNQSLAAEYLGINR 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCH
Confidence 444555556668889999876 889999999983
No 148
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=24.64 E-value=53 Score=32.74 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=26.2
Q ss_pred hHHHHHHHhCCHHHHHHHcCchhhccccCCCCCCCChHhHHHHH
Q 008769 407 DVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEI 450 (554)
Q Consensus 407 dl~~ai~~~GG~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei 450 (554)
.+..+|.++|.+.++|++|+++ +..-...+.+||+|+
T Consensus 13 ~~f~~v~~~gs~t~AA~~L~it-------q~avS~~i~~LE~~l 49 (294)
T PRK09986 13 RYFLAVAEELHFGRAAARLNIS-------QPPLSIHIKELEDQL 49 (294)
T ss_pred HHHHHHHHhcCHHHHHHHhCCC-------CCHHHHHHHHHHHHh
Confidence 3456999999999999999998 333444455555543
No 149
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=23.88 E-value=71 Score=26.03 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.9
Q ss_pred HHHHHHhCCHHHHHHHcCchh
Q 008769 409 EKAITRMGGFRRMASLMNLAL 429 (554)
Q Consensus 409 ~~ai~~~GG~~~va~~l~l~~ 429 (554)
.+||.-.||..++|+.||.+.
T Consensus 3 ~~aI~~~G~~~~lAkalGVs~ 23 (60)
T PF14549_consen 3 KDAIKYFGGQSKLAKALGVSP 23 (60)
T ss_dssp HHHHHHHSSHHHHHHHHTS-H
T ss_pred HHHHHHHCCHHHHHHHHCCCH
Confidence 468999999999999999983
No 150
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=23.61 E-value=50 Score=32.95 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHHHHHhCCHHHHHHHcCch
Q 008769 408 VEKAITRMGGFRRMASLMNLA 428 (554)
Q Consensus 408 l~~ai~~~GG~~~va~~l~l~ 428 (554)
+..+|.++|.+.++|++||++
T Consensus 8 ~f~~v~~~gs~s~AA~~L~is 28 (296)
T PRK11242 8 YFLAVAEHGNFTRAAEALHVS 28 (296)
T ss_pred HHHHHHHhCCHHHHHHHcCCC
Confidence 456899999999999999998
No 151
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=23.49 E-value=1.6e+02 Score=25.37 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=34.0
Q ss_pred hHhHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCH
Q 008769 443 LENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGL 488 (554)
Q Consensus 443 ~~~l~~ei~~f~~~~g~~~~~mPs~~~l~~agR~Dl~~ai~~~GG~ 488 (554)
.++...=+.+|++.+| +||..+|.++.-.||..+|..+|=.
T Consensus 11 ~~~a~~~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 11 IKAARKIYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 4555566777888888 9999999999999999999986654
No 152
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=23.34 E-value=46 Score=32.71 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.0
Q ss_pred HHHHHHHhCCHHHHHHHcCch
Q 008769 408 VEKAITRMGGFRRMASLMNLA 428 (554)
Q Consensus 408 l~~ai~~~GG~~~va~~l~l~ 428 (554)
...||.++|.|.++|++||++
T Consensus 4 ~f~~v~~~gs~~~AA~~L~is 24 (279)
T TIGR03339 4 AFHAVARCGSFTRAAERLGLS 24 (279)
T ss_pred hhHHHHhcCCHHHHHHHhcCC
Confidence 356899999999999999998
No 153
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional
Probab=22.67 E-value=64 Score=32.97 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCCHHHHHhcChhhHHHHHHHhCCHHHHHHHcCchh
Q 008769 393 FMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLAL 429 (554)
Q Consensus 393 ~mP~~~~Lr~~gr~dl~~ai~~~GG~~~va~~l~l~~ 429 (554)
.||+-.+|+ ...+|..+|.+.++|++||++.
T Consensus 5 ~~~~~~~L~------~F~av~e~gs~s~AA~~L~iSQ 35 (312)
T PRK10341 5 LLPKTQHLV------VFQEVIRSGSIGSAAKELGLTQ 35 (312)
T ss_pred hhccHHHHH------HHHHHHHcCCHHHHHHHhCCCh
Confidence 356666665 3789999999999999999984
No 154
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=21.91 E-value=62 Score=32.89 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=25.9
Q ss_pred HHHHHHHhCCHHHHHHHcCchhhccccCCCCCCCChHhHHHHH
Q 008769 408 VEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEI 450 (554)
Q Consensus 408 l~~ai~~~GG~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei 450 (554)
...+|.++|.|.++|++|+++. ..--.-+..||+|+
T Consensus 12 ~f~~v~e~gs~s~AA~~L~isq-------pavS~~i~~LE~~l 47 (305)
T CHL00180 12 ILKAIATEGSFKKAAESLYISQ-------PAVSLQIKNLEKQL 47 (305)
T ss_pred HHHHHHHcCCHHHHHHHhcCCC-------hHHHHHHHHHHHHh
Confidence 4668999999999999999983 33333355555543
No 155
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=21.84 E-value=2.2e+02 Score=26.28 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=29.0
Q ss_pred CCCCC-----CcceeeeEEeeecCCCCceEEEEEEEeecCCC
Q 008769 1 MVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN 37 (554)
Q Consensus 1 mv~GD-----F~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~~ 37 (554)
+++|| |+.|.+..++.|. +..+|.+.|.++..|.-.
T Consensus 82 vveg~~~~~~~~~y~~t~~v~~~-~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 82 VIEGDVLKDGYKSYKVEIKFVPK-GDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEecccccCceEEEEEEEEEEEC-CCCCEEEEEEEEEEECCC
Confidence 46776 5678899999998 455789999999998765
No 156
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=21.75 E-value=2e+02 Score=26.55 Aligned_cols=102 Identities=20% Similarity=0.305 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCHHHHHhcChhhHHHHHHHhCCHHHHHHH-cCchhhccccCCCCCCCChHhHHHHH
Q 008769 372 TNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASL-MNLALAYKHRKPKGYWDNLENLEEEI 450 (554)
Q Consensus 372 ~~~~~l~~el~~~~~~~g~~~~mP~~~~Lr~~gr~dl~~ai~~~GG~~~va~~-l~l~~a~~~r~p~gyw~~~~~l~~ei 450 (554)
-.+++-..-..+|++.+| |+...|.++.-.+|.+.+...| +..=|+. .++.-.+ ..+..+...+.+.++++|
T Consensus 13 ~s~~~a~~~~~~l~~~~g-----pt~~~l~~~~~~~l~~~~~~~G-~~~kA~~i~~~a~~~-~~~~~~~~~~~~~~~~~L 85 (158)
T cd00056 13 TTDKAVNKAYERLFERYG-----PTPEALAAADEEELRELIRSLG-YRRKAKYLKELARAI-VEGFGGLVLDDPDAREEL 85 (158)
T ss_pred ccHHHHHHHHHHHHHHhC-----CCHHHHHCCCHHHHHHHHHhcC-hHHHHHHHHHHHHHH-HHHcCCccCCCcccHHHH
Confidence 345566677778888877 9999999999999999999988 5443333 3333222 111111111335666665
Q ss_pred HHHH----------HHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCH
Q 008769 451 SRFQ----------RSWGMDPSFMPSRKSFERAGRYDIARALEKWGGL 488 (554)
Q Consensus 451 ~~f~----------~~~g~~~~~mPs~~~l~~agR~Dl~~ai~~~GG~ 488 (554)
..+= ...++.+..+|- |. =+.+++.++|+.
T Consensus 86 ~~l~GIG~~tA~~~l~~~~~~~~~pv--D~------~v~r~~~~~~~~ 125 (158)
T cd00056 86 LALPGVGRKTANVVLLFALGPDAFPV--DT------HVRRVLKRLGLI 125 (158)
T ss_pred HcCCCCCHHHHHHHHHHHCCCCCCcc--ch------hHHHHHHHhCCC
Confidence 5521 112333556775 22 255667776663
No 157
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=21.44 E-value=56 Score=32.82 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.2
Q ss_pred HHHHHHHhCCHHHHHHHcCchh
Q 008769 408 VEKAITRMGGFRRMASLMNLAL 429 (554)
Q Consensus 408 l~~ai~~~GG~~~va~~l~l~~ 429 (554)
+..+|.++|.|.++|++||++.
T Consensus 10 ~f~~v~~~gS~s~AA~~L~isq 31 (300)
T TIGR02424 10 CFVEVARQGSVKRAAEALHITQ 31 (300)
T ss_pred HHHHHHHhCCHHHHHHHhCCCh
Confidence 4568999999999999999984
No 158
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=21.41 E-value=56 Score=33.03 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.6
Q ss_pred HHHHHHHhCCHHHHHHHcCchh
Q 008769 408 VEKAITRMGGFRRMASLMNLAL 429 (554)
Q Consensus 408 l~~ai~~~GG~~~va~~l~l~~ 429 (554)
+..+|.++|++.++|++||.+.
T Consensus 12 ~f~~v~~~gs~s~AA~~L~isQ 33 (302)
T PRK09791 12 AFVEVARQGSIRGASRMLNMSQ 33 (302)
T ss_pred HHHHHHHcCCHHHHHHHhCCCh
Confidence 4679999999999999999884
No 159
>PRK13348 chromosome replication initiation inhibitor protein; Provisional
Probab=21.19 E-value=63 Score=32.46 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.1
Q ss_pred HHHHHHHhCCHHHHHHHcCch
Q 008769 408 VEKAITRMGGFRRMASLMNLA 428 (554)
Q Consensus 408 l~~ai~~~GG~~~va~~l~l~ 428 (554)
...+|.++|+|.++|++||++
T Consensus 9 ~f~~v~~~gs~t~AA~~L~iS 29 (294)
T PRK13348 9 ALAAVVETGSFERAARRLHVT 29 (294)
T ss_pred HHHHHHHcCCHHHHHHHhCCC
Confidence 467899999999999999997
No 160
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=20.29 E-value=1.2e+02 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.0
Q ss_pred cceeeeEEeeecCCCCceEEEEEEEeecCC
Q 008769 7 KKFEGKWSIKSGTRSSTTTLSYEVNVIPRL 36 (554)
Q Consensus 7 ~~f~G~W~l~~~~~~~~t~L~Y~~~v~P~~ 36 (554)
..+.|-|.|+|.. ..+|.++|.+.+-|.+
T Consensus 178 ~~~~ggW~I~p~~-~~~t~VtY~~~~dPg~ 206 (235)
T cd08873 178 EVACAGFVIRQDC-GTCTEVSYYNETNPKL 206 (235)
T ss_pred EEEeeeEEEEECC-CCcEEEEEEEEcCCCc
Confidence 3578999999964 4568899999999976
No 161
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=20.24 E-value=1.1e+02 Score=26.35 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=37.4
Q ss_pred CHHHHHHHcCchhhccccCCCCCCCChHhHHHHHHHHHHHhCCCCCCCCC-----HHHHHHhchHHHHHHHHH
Q 008769 417 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPS-----RKSFERAGRYDIARALEK 484 (554)
Q Consensus 417 G~~~va~~l~l~~a~~~r~p~gyw~~~~~l~~ei~~f~~~~g~~~~~mPs-----~~~l~~agR~Dl~~ai~~ 484 (554)
-|..+|..||++-+-=.+-...| -.+|++.+.+....|-...+-.|. .+.|.++||.||+.-|+-
T Consensus 15 ~Wk~lar~LGlse~~Id~Ie~~~---~~dl~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~dlae~l~~ 84 (86)
T cd08779 15 DWQAIGLHLGLSYRELQRIKYNN---RDDLDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQDLADEVRA 84 (86)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHC---ccCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHHHHHHHHHh
Confidence 36778888888743111112222 235666666666555332211222 457889999999988763
No 162
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=20.08 E-value=58 Score=32.81 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHHhCCHHHHHHHcCch
Q 008769 408 VEKAITRMGGFRRMASLMNLA 428 (554)
Q Consensus 408 l~~ai~~~GG~~~va~~l~l~ 428 (554)
...+|.++|.|.++|++|+++
T Consensus 13 ~f~~v~~~gs~s~AA~~L~is 33 (297)
T PRK11139 13 AFEAAARHLSFTRAAEELFVT 33 (297)
T ss_pred HHHHHHHhCCHHHHHHHhCCC
Confidence 467999999999999999998
Done!