BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008771
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 116/285 (40%), Gaps = 64/285 (22%)
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGK 304
E GFT + +++ S GW+M+++L + EPTNHLD + WL YL
Sbjct: 534 EFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
Query: 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364
+ + ISHD FLD +C I+ E R Y+GN++++V + A K
Sbjct: 594 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPA---------AKAYE 644
Query: 365 EIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG------ 418
E+ T ++ +FPE G
Sbjct: 645 ELSNT---------------------------------------DLEFKFPEPGYLEGVK 665
Query: 419 RSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+++V + N+EF Y + N + A+IGPNG GKSTL+ ++ G P
Sbjct: 666 TKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLETVAEAAEDWR 519
GEV E N Y +Q+ ++ LDKT E + WR
Sbjct: 726 TSGEVYTHE-NCRIAYIKQHAFAHIESHLDKTPSEYI-----QWR 764
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 429 NLEF--GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEV 481
N EF Y ++L N+ L ++R + I GPNGCGKSTL++ I G
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT 497
Query: 482 LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
+ EH++ + D +VL+ V E+ + + IK L F +M+ +
Sbjct: 498 VYVEHDI----------DGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPI 546
Query: 542 SLLSGGEKIIL 552
S LSGG K+ L
Sbjct: 547 SALSGGWKMKL 557
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 114/285 (40%), Gaps = 64/285 (22%)
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGK 304
E GFT + +++ S GW+ +++L + EPTNHLD + WL YL
Sbjct: 534 EFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
Query: 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364
+ + ISHD FLD +C I+ E R Y+GN++++V + A K
Sbjct: 594 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPA---------AKAYE 644
Query: 365 EIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG------ 418
E+ T ++ +FPE G
Sbjct: 645 ELSNT---------------------------------------DLEFKFPEPGYLEGVK 665
Query: 419 RSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+++V + N EF Y + N + A+IGPNG GKSTL+ ++ G P
Sbjct: 666 TKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLETVAEAAEDWR 519
GEV E N Y +Q+ ++ LDKT E + WR
Sbjct: 726 TSGEVYTHE-NCRIAYIKQHAFAHIESHLDKTPSEYI-----QWR 764
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 429 NLEF--GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEV 481
N EF Y ++L N+ L ++R + I GPNGCGKSTL + I G
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRT 497
Query: 482 LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
+ EH++ + D +VL+ V E+ + + IK L F + + +
Sbjct: 498 VYVEHDI----------DGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEXIAXPI 546
Query: 542 SLLSGGEK 549
S LSGG K
Sbjct: 547 SALSGGWK 554
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 257 VASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
+ S G ++++ L EPTN+LD D++ L L + + ++II+H
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 317 AFLDQLCTKI 326
F L ++
Sbjct: 959 EFTKNLTEEV 968
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 114/285 (40%), Gaps = 64/285 (22%)
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGK 304
E GFT + +++ S GW+ +++L + EPTNHLD + WL YL
Sbjct: 528 EFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 587
Query: 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364
+ + ISHD FLD +C I+ E R Y+GN++++V + A K
Sbjct: 588 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPA---------AKAYE 638
Query: 365 EIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG------ 418
E+ T ++ +FPE G
Sbjct: 639 ELSNT---------------------------------------DLEFKFPEPGYLEGVK 659
Query: 419 RSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+++V + N EF Y + N + A+IGPNG GKSTL+ ++ G P
Sbjct: 660 TKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 719
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLETVAEAAEDWR 519
GEV E N Y +Q+ ++ LDKT E + WR
Sbjct: 720 TSGEVYTHE-NCRIAYIKQHAFAHIESHLDKTPSEYI-----QWR 758
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 429 NLEF--GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEV 481
N EF Y ++L N+ L ++R + I GPNGCGKSTL + I G
Sbjct: 432 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRT 491
Query: 482 LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
+ EH++ + D +VL+ V E+ + + IK L F + + +
Sbjct: 492 VYVEHDI----------DGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEXIAXPI 540
Query: 542 SLLSGGEK 549
S LSGG K
Sbjct: 541 SALSGGWK 548
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 257 VASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
+ S G ++++ L EPTN+LD D++ L L + + ++II+H
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 952
Query: 317 AFLDQLCTKI 326
F L ++
Sbjct: 953 EFTKNLTEEV 962
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 25/145 (17%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV- 481
+++ +L + + + L N +L I GE AIIGPNG GKSTLL+L+ G P GE
Sbjct: 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH 69
Query: 482 LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF--------- 532
LLG++ Q +AL + V+ +E A + + ++ +GR +
Sbjct: 70 LLGQN------LNSWQPKALARTRAVMRQYSELAFPFSVSEVIQ-MGRAPYGGSQDRQAL 122
Query: 533 -----KADML---DRKVSLLSGGEK 549
+ D L R +LSGGE+
Sbjct: 123 QQVMAQTDCLALAQRDYRVLSGGEQ 147
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 425 VTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++++NL F Y+ + LF + N + +G+ A++G NGCGKSTLL L++G+ +P G++ +
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 484 GEH-NVLPNYFEQNQA-EALDL----DKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADM 536
+ +P +F A LD+ T + T A+ + D+++ L N +
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA--MQALDYLNL-THL 121
Query: 537 LDRKVSLLSGGEKIILL 553
R+ + LSGG++ ++L
Sbjct: 122 AKREFTSLSGGQRQLIL 138
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 13 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 72
Query: 485 EHNV 488
+ +V
Sbjct: 73 DRDV 76
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + GKTT LR+IAG EEP G +
Sbjct: 13 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 485 EHNV 488
+ +V
Sbjct: 72 DRDV 75
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + GKTT LR+IAG EEP G +
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE---HNVLPNYFEQN---QAEA 500
++ GE A++GP+GCGK+T L ++ G+ KP GE+ + +++ P Y E Q A
Sbjct: 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA 85
Query: 501 LDLDKTVLETVAEAAEDWRI--DDIKGL---LGRCNFKADMLDRKVSLLSGGEK 549
L TV E +A RI D+++ + R ++LDRK + LSGG++
Sbjct: 86 LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQ 139
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 27/150 (18%)
Query: 424 VVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+V +++ F Y +R L+ T+ GE TA++GPNG GKST+ L+ L +P GG+
Sbjct: 14 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 481 VLLG-------EHNVL----------PNYF----EQNQAEALDLDKTVLETVAEAAEDWR 519
+LL EH L P F ++N A L T+ E A A +
Sbjct: 74 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 133
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
I GL + + +D S LSGG++
Sbjct: 134 HSFISGLPQGYDTE---VDEAGSQLSGGQR 160
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEA 514
+ H++ PN+ + L L++++++ ++ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA 106
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEA 514
+ H++ PN+ + L L++++++ ++ A
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA 100
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEA 514
+ H++ PN+ + L L++++++ ++ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA 106
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEA 514
+ H++ PN+ + L L++++++ ++ A
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA 100
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEA 514
+ H++ PN+ + L L++++++ ++ A
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA 106
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEA 514
+ H++ PN+ + L L++++++ ++ A
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA 102
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 29/145 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 E-------------------HNVLPNY-FEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
E + + P+ +N + L L E + + R++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI-----NQRVNQVA 118
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
+L A +LDRK LSGG++
Sbjct: 119 EVLQL----AHLLDRKPKALSGGQR 139
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 58/252 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
+ V+L+N++K++ V V KD+ + GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 156 KAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M + + Q + + +V E K +AG + V + V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK----LAGAKKEVINQRVNQV 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
++ + LLD RK +A S G + R
Sbjct: 118 AEVLQLAHLLD------RKPKA------------------------------LSGGQRQR 141
Query: 268 MSLGKIXXXXXXXXXXXEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHDRAFLD 320
+++G+ EP ++LD I L LG+ M+ ++HD+
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT---MIYVTHDQVEAM 198
Query: 321 QLCTKIVETEMG 332
L KIV + G
Sbjct: 199 TLADKIVVLDAG 210
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 29/145 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 E-------------------HNVLPNY-FEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
E + + P+ +N + L L E + + R++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI-----NQRVNQVA 118
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
+L A +LDRK LSGG++
Sbjct: 119 EVLQL----AHLLDRKPKALSGGQR 139
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 93/252 (36%), Gaps = 58/252 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
+ V+L+N++K++ V V KD+ + GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 156 KAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M + + Q + + +V E K +AG + V + V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK----LAGAKKEVINQRVNQV 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
++ + LLD RK +A S G + R
Sbjct: 118 AEVLQLAHLLD------RKPKA------------------------------LSGGQRQR 141
Query: 268 MSLGKIXXXXXXXXXXXEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHDRAFLD 320
+++G+ +P ++LD I L LG+ M+ ++HD+
Sbjct: 142 VAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT---MIYVTHDQVEAM 198
Query: 321 QLCTKIVETEMG 332
L KIV + G
Sbjct: 199 TLADKIVVLDAG 210
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 29/145 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 E-------------------HNVLPNY-FEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
E + + P+ +N + L L E + + R++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI-----NQRVNQVA 118
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
+L A +LDRK LSGG++
Sbjct: 119 EVLQL----AHLLDRKPKALSGGQR 139
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 58/252 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
+ V+L+N++K++ V V KD+ + GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 156 KAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M + + Q + + +V E K +AG + V + V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK----LAGAKKEVINQRVNQV 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
++ + LLD RK +A S G + R
Sbjct: 118 AEVLQLAHLLD------RKPKA------------------------------LSGGQRQR 141
Query: 268 MSLGKIXXXXXXXXXXXEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHDRAFLD 320
+++G+ EP ++LD I L LG+ M+ ++HD+
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT---MIYVTHDQVEAM 198
Query: 321 QLCTKIVETEMG 332
L KIV + G
Sbjct: 199 TLADKIVVLDAG 210
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G G GKSTL KLI P G+VL
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEA 514
+ H++ PN+ + L L++++++ ++ A
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA 102
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 419 RSGRSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
+S + + KN+ F Y R +F +L+I G TA++GP+G GKST+L L++ L
Sbjct: 336 KSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395
Query: 476 PRGGEVLLGEHNV 488
P G + L H++
Sbjct: 396 PASGTISLDGHDI 408
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 419 RSGRSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
+S + + KN+ F Y R +F +L+I G TA++GP+G GKST+L L++ L
Sbjct: 367 KSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 426
Query: 476 PRGGEVLLGEHNV 488
P G + L H++
Sbjct: 427 PASGTISLDGHDI 439
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 25/127 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LP----N 491
+L ++ GE ++GP+GCGK+T L++I GLE+P G++ +G+ V +P +
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 492 YFEQNQAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ AL TV + +A + D R+ ++ LLG ++L+RK
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT----ELLNRKPR 138
Query: 543 LLSGGEK 549
LSGG++
Sbjct: 139 ELSGGQR 145
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
+GV+L ++ K + VT +++++ E GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Query: 425 VTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V KN+ F Y +R + + ++E G+ A++GP+GCGKST++ L+ GGE+
Sbjct: 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
Query: 482 LLG---------EHNVL--------PNYFEQNQAEAL--DLDKTVLETVAEAAEDWRIDD 522
+ EH P F+ + AE + LD + + T+A+ E R+ +
Sbjct: 1137 FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV-TMAQVEEAARLAN 1195
Query: 523 IKGLLGRC--NFKADMLDRKVSLLSGGEK 549
I + F+ + DR LSGG+K
Sbjct: 1196 IHNFIAELPEGFETRVGDRGTQ-LSGGQK 1223
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGK 463
RK MKI+ +T++N+ F Y R + NL + G+ A++G +GCGK
Sbjct: 407 RKDMKIK---------GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGK 457
Query: 464 STLLKLIM 471
ST++ L++
Sbjct: 458 STIISLLL 465
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
I++L GY D+ + R +TIE+G GPNG GK+TLLK I KP GE++ +
Sbjct: 13 IRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII---Y 68
Query: 487 NVLP 490
N +P
Sbjct: 69 NGVP 72
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 23/133 (17%)
Query: 433 GYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--L 489
GYE F+ N+ +E GEK I+GPNG GK+TLL+ I GL P G + + V +
Sbjct: 15 GYER---FSLENINLEVNGEKVIILGPNGSGKTTLLRAISGL-LPYSGNIFINGMEVRKI 70
Query: 490 PNY--FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL--------LGRCNFKADMLDR 539
NY + N EA ++ TV + V + +++KGL L ++L R
Sbjct: 71 RNYIRYSTNLPEAYEIGVTVNDIV------YLYEELKGLDRDLFLEMLKALKLGEEILRR 124
Query: 540 KVSLLSGGEKIIL 552
K+ LS G+ +++
Sbjct: 125 KLYKLSAGQSVLV 137
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 24/129 (18%)
Query: 422 RSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ +V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P G
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 479 GEVLL-GE------HNVLPNY--------------FEQNQAEALDLDKTVLETVAEAAED 517
G+VLL GE H+ L F +N A L T+ E A A E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 518 WRIDDIKGL 526
D I G
Sbjct: 134 GAHDFISGF 142
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 24/129 (18%)
Query: 422 RSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ +V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P G
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 479 GEVLL-GE------HNVLPNY--------------FEQNQAEALDLDKTVLETVAEAAED 517
G+VLL GE H+ L F +N A L T+ E A A E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 518 WRIDDIKGL 526
D I G
Sbjct: 134 GAHDFISGF 142
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 24/129 (18%)
Query: 422 RSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ +V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P G
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 479 GEVLL-GE------HNVLPNY--------------FEQNQAEALDLDKTVLETVAEAAED 517
G+VLL GE H+ L F +N A L T+ E A A E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 518 WRIDDIKGL 526
D I G
Sbjct: 134 GAHDFISGF 142
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + I +L +++ + N +L+++ GE IIG +GCGK+TLL+ + G E+P GE+
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 483 L 483
L
Sbjct: 63 L 63
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+++ + + ++SKS++ VL D++ GKTT LR +AG E+PDSG
Sbjct: 1 MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 154 V 154
+
Sbjct: 61 I 61
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
N NL I+ GE A++GP+G GKSTLL I G+ KP G++ E +V
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV 67
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
+KLENI K + T L ++ + +GK+T L IAG +P SG +
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
P + GR + I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI
Sbjct: 332 PIEIKQGR--IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389
Query: 473 LEKPRGGEVLLGEHNV 488
G++L+ HN+
Sbjct: 390 FYDVTSGQILIDGHNI 405
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491
+ N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+ + V N
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSG 152
+ ++N+SK +K V L +V AGKTT +RIIAG + P +G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ I GE ++GP+G GK+T+L+LI GLE+P G+V +G V
Sbjct: 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 134 AGKTTQLRIIAGQEEPDSGNV 154
+GKTT LR+IAG E P G+V
Sbjct: 52 SGKTTILRLIAGLERPTKGDV 72
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491
+ N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+ + V N
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSG 152
+ ++N+SK +K V L +V AGKTT +RIIAG + P +G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG 478
G +++IK+L ED+ + +L + GE AI+GPNG GKSTL + G E + G
Sbjct: 17 GSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG 76
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWRIDDIKGL 526
G V ++L E E + + ++ L+T A +R +
Sbjct: 77 GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQET--- 133
Query: 527 LGRCNFKADMLDRKVSLLSGGEKII 551
L R +F+ D+++ K++LL E ++
Sbjct: 134 LDRFDFQ-DLMEEKIALLKMPEDLL 157
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 25/127 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-------GEHNVLPNYFEQN 496
+L I+ GE ++GP+GCGK+T L+ I GLE+P G++ + E V E++
Sbjct: 26 SLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERD 85
Query: 497 -----QAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ AL TV + +A + D R+ ++ LG ++L+RK
Sbjct: 86 VAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLT----ELLNRKPR 141
Query: 543 LLSGGEK 549
LSGG++
Sbjct: 142 ELSGGQR 148
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
VKL NI K + VT +KD++ E GKTT LR IAG EEP G +
Sbjct: 7 VKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQI 63
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
K + G E NL I+ GE +I+GP+G GKST+L +I L+KP GEV + N
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI--DN 66
Query: 488 VLPNYFEQNQAEALDLDK 505
+ N + ++ + DK
Sbjct: 67 IKTNDLDDDELTKIRRDK 84
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
VKL+N++K+YK + LK+V +GK+T L II ++P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 VI--KAKSN------------MKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
V K+N KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALES 205
R ++ALE
Sbjct: 121 RRKRALEC 128
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
K + G E NL I+ GE +I+GP+G GKST+L +I L+KP GEV + N
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI--DN 66
Query: 488 VLPNYFEQNQAEALDLDK 505
+ N + ++ + DK
Sbjct: 67 IKTNDLDDDELTKIRRDK 84
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 VI--KAKSN------------MKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
V K+N KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALES 205
R ++ALE
Sbjct: 121 RRKRALEC 128
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++ L + Y D N+ I+RGE TAI+G NG GKSTL + G+ KP G +L
Sbjct: 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 483 L 483
Sbjct: 67 F 67
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
I++GE I+GPNG GK+T +K + G+E+P G++ E ++ Y + Q D + T
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI---EWDLTVAY--KPQYIKADYEGT 363
Query: 507 VLETVAEA-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
V E +++ A + K L + D+ DR+V+ LSGGE
Sbjct: 364 VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGE 406
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--------GGEVLLGEHNVLPNYFEQ-- 495
++ G I+GPNG GKST +K++ G P G + N L NYFE+
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 496 -------NQAEALDL-----DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
+ + +DL V+E + +A E +++++ L N +L+R++
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN----VLEREIQH 158
Query: 544 LSGGE 548
LSGGE
Sbjct: 159 LSGGE 163
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEV 481
+++IK+L ED+ + +L + GE AI+GPNG GKSTL + G E + GG V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 482 LLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWRIDDIKGLLGR 529
++L E E + + ++ L+T A +R + L R
Sbjct: 61 EFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQET---LDR 117
Query: 530 CNFKADMLDRKVSLLSGGEKII 551
+F+ D+++ K++LL E ++
Sbjct: 118 FDFQ-DLMEEKIALLKMPEDLL 138
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NL I+ GE +I GP+G GKST L +I L+KP GEV + N+ N + ++ +
Sbjct: 24 VNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYI--DNIKTNDLDDDELTKIR 81
Query: 503 LDK 505
DK
Sbjct: 82 RDK 84
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 154 VI--KAKSN------------MKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
V K+N KI F+ Q+F + T E E FK +G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE-E 120
Query: 198 RVQKALES 205
R ++ALE
Sbjct: 121 RRKRALEC 128
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 435 EDRLLFNRANLTIERG-EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
E RL R N+ E G + ++GP G GKS L+LI G+ KP GEV L ++ P
Sbjct: 8 EKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP 67
Query: 494 EQN------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK---ADMLDRKVSLL 544
E+ Q AL +V +A + + + K A +LDRK + L
Sbjct: 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL 127
Query: 545 SGGEK 549
SGGE+
Sbjct: 128 SGGER 132
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 428 KNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
KN+ F Y R + NL ++ G+ A++G +GCGKST ++L+ L P G V +
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 485 EHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
++ L E + T+ E + ED +D+I+ + N
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+L +++G+ A++G +GCGKST+++L+ P G V L
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 428 KNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
KN+ F Y R + NL ++ G+ A++G +GCGKST ++L+ L P G V +
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 485 EHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
++ L E + T+ E + ED +D+I+ + N
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+L +++G+ A++G +GCGKST+++L+ P G V L
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-----LEKPR 477
S + I++L + + NL + +GE A++GPNG GKSTL K++ G +E+
Sbjct: 2 SQLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER-- 59
Query: 478 GGEVLLGEHNVL 489
GE+LL N+L
Sbjct: 60 -GEILLDGENIL 70
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
I +GE I+GPNG GK+T +K++ G+E+P G+V
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE--------VLLGEHNVLPNYFEQ--- 495
++ G I+GPNG GK+T +K++ G P E + N L NYFE+
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 496 ------NQAEALD-LDKTVLETVAEAAEDWRIDDIKGL--LGRCNFKADMLDRKVSLLSG 546
+ + +D L K V V E + ++D++ + + ++LDR++ LSG
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVRELLK--KVDEVGKFEEVVKELELENVLDRELHQLSG 231
Query: 547 GE 548
GE
Sbjct: 232 GE 233
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 135 GKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180
GKTT ++++AG EEP G K + ++ +A+ Q + TV E
Sbjct: 394 GKTTFVKMLAGVEEPTEG---KVEWDLTVAYKPQYIKAEYEGTVYE 436
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
I +GE I+GPNG GK+T +K++ G+E+P G+V
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE--------VLLGEHNVLPNYFEQ--- 495
++ G I+GPNG GK+T +K++ G P E + N L NYFE+
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
Query: 496 ------NQAEALD-LDKTVLETVAEAAEDWRIDDIKGL--LGRCNFKADMLDRKVSLLSG 546
+ + +D L K V V E + ++D++ + + ++LDR++ LSG
Sbjct: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLK--KVDEVGKFEEVVKELELENVLDRELHQLSG 217
Query: 547 GE 548
GE
Sbjct: 218 GE 219
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 135 GKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180
GKTT ++++AG EEP G K + ++ +A+ Q + TV E
Sbjct: 380 GKTTFVKMLAGVEEPTEG---KVEWDLTVAYKPQYIKAEYEGTVYE 422
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+L +E GE I+GP G GK+ L+LI G P G +LL +V
Sbjct: 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV 64
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 415 PERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
P R + GR + +N+ F Y D R + T+ G+ A++GP+G GKST+L+L+
Sbjct: 46 PLRFQKGR--IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V +
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 485 EHNVL 489
NV+
Sbjct: 76 GKNVV 80
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
V +EN++ ++ G VLKD+ ++ AGKT+ L +I G+ EP G
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189
K K + +I+F SQ F M T++E + +E
Sbjct: 64 KIKHSGRISFCSQ-FSWIMPGTIKENIIGVSYDE 96
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
N IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
V +EN++ ++ G VLKD+ ++ AGKT+ L +I G+ EP G
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K K + +I+F SQ F M T++E +
Sbjct: 64 KIKHSGRISFCSQ-FSWIMPGTIKENII 90
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++P
Sbjct: 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQFSWIMPGT 84
Query: 493 FEQNQAEALDLDKTVLETVAEAAE 516
++N + D+ +V +A +
Sbjct: 85 IKENIIFGVSYDEYRYRSVIKACQ 108
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG-----GEVLLGEHN--VLPNYFEQ 495
NL IE+GE AI G G GK++LL LI+G LE G G V ++P ++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 496 NQAEALDLDKTVLETVAEAAE 516
N + D+ ++V +A +
Sbjct: 118 NIISGVSYDEYRYKSVVKACQ 138
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG-----GEVLLGEHN--VLPNYFEQ 495
NL IE+GE AI G G GK++LL LI+G LE G G V ++P ++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 496 NQAEALDLDKTVLETVAEAAE 516
N + D+ ++V +A +
Sbjct: 118 NIIRGVSYDEYRYKSVVKACQ 138
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
V +EN++ ++ G VLKD+ ++ AGKT+ L +I G+ EP G
Sbjct: 19 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--- 75
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K K + +I+F SQ F M T++E +
Sbjct: 76 KIKHSGRISFCSQ-FSWIMPGTIKENII 102
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
N IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 40 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 77
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 419 RSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
R R + KN+ F Y+ + + I+ G+K A++GP G GK+T++ L+M
Sbjct: 349 REVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408
Query: 478 GGEVLL 483
G++L+
Sbjct: 409 RGQILV 414
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
IK + GYE + +L++++GE +IIG +G GKSTLL ++ L+ P G+V L
Sbjct: 10 IKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++P
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQFSWIMPGT 114
Query: 493 FEQNQAEALDLDKTVLETVAEAAE 516
++N + D+ +V +A +
Sbjct: 115 IKENIIAGVSYDEYRYRSVIKACQ 138
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 83 SNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRI 142
+N++++ G S+S N S G VLKD+ ++ AGKT+ L +
Sbjct: 30 NNRKTSNGDDSLS----FSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM 83
Query: 143 IAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
I G+ EP G K K + +I+F SQ F M T++E ++
Sbjct: 84 IMGELEPSEG---KIKHSGRISFCSQ-FSWIMPGTIKENIIAG 122
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
N +L + G+ +IG +G GKSTL++ + LE+P G VL+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + + L +V+ AGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIK-------------AKSNMKIAFLSQEFEVSMSRTV 178
V+ K+ +I + Q F + SRTV
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++ QN
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQN 107
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 83 SNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRI 142
+N++++ G S+S N S G VLKD+ ++ AGKT+ L +
Sbjct: 30 NNRKTSNGDDSLS----FSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM 83
Query: 143 IAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189
I G+ EP G K K + +I+F SQ + M T++E + +E
Sbjct: 84 IMGELEPSEG---KIKHSGRISFCSQNSWI-MPGTIKENIIGVSYDE 126
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG-----GEVLLGEHN--VLPNYFEQ 495
NL IE+GE AI G G GK++LL LI+G LE G G V ++P ++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 496 NQAEALDLDKTVLETVAEAAE 516
N + D+ ++V +A +
Sbjct: 118 NIIFGVSYDEYRYKSVVKACQ 138
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++ QN
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQN 107
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 109 GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VLKD+ ++ AGKT+ L +I G+ EP G K K + +I+F SQ
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG---KIKHSGRISFCSQ 106
Query: 169 EFEVSMSRTVREEFMSAFKEE 189
+ M T++E + +E
Sbjct: 107 NSWI-MPGTIKENIIGVSYDE 126
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
N +L + G+ +IG +G GKSTL++ + LE+P G VL+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + + L +V+ AGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIK-------------AKSNMKIAFLSQEFEVSMSRTV 178
V+ K+ +I + Q F + SRTV
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTV 122
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG-----GEVLLGEHN--VLPNYFEQ 495
NL IE+GE AI G G GK++LL LI+G LE G G V ++P ++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 496 NQAEALDLDKTVLETVAEAAE 516
N + D+ ++V +A +
Sbjct: 118 NIIFGVSYDEYRYKSVVKACQ 138
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
N +L + G+ +IG +G GKSTL++ + LE+P G VL+
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 64
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + + L +V+ AGK+T +R + E P G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 154 VIK-------------AKSNMKIAFLSQEFEVSMSRTV 178
V+ K+ +I + Q F + SRTV
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 99
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
N IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 109 GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VLKD+ ++ AGKT+ L +I G+ EP G K K + +I+F SQ
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG---KIKHSGRISFCSQ 106
Query: 169 EFEVSMSRTVREEFM 183
F M T++E +
Sbjct: 107 -FSWIMPGTIKENII 120
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYEDRLL--FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +N+ F Y R + NL I G+ A++G +G GKST+ LI GE+L
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 483 LGEHNV 488
+ H++
Sbjct: 402 MDGHDL 407
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
N IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 109 GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VLKD+ ++ AGKT+ L +I G+ EP G K K + +I+F SQ
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG---KIKHSGRISFCSQ 106
Query: 169 EFEVSMSRTVREEFMSAFKEE 189
F M T++E + +E
Sbjct: 107 -FSWIMPGTIKENIIGVSYDE 126
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG 478
NL IE+GE AI G G GK++LL LI+G LE G
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V+ +N+EF Y + + + N +++ G A++G G GKSTL+ LI L P G V
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401
Query: 483 LGEHNV 488
+ E +V
Sbjct: 402 VDELDV 407
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+L I GE + G G GKSTLL+++ GL +P G+VL
Sbjct: 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 65
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 134 AGKTTQLRIIAGQEEPDSGNVI---------KAKSNMKIAFLSQEFEVSMSRTVREEFMS 184
+GK+T L+I+AG EP SG+V+ + + N+ IAF E + R V +E
Sbjct: 44 SGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAER-VFDEVAF 102
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMD 211
A K + V+KA+E D D
Sbjct: 103 AVKNFYPDRDPVPLVKKAMEFVGLDFD 129
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + ++ F Y + N E G+ ++G NG GK+TLLK++ GL GE+ L
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL-LAAAGEIFLD 70
Query: 485 EHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
P Y QN + + + TV E VA + E +D+
Sbjct: 71 GSPADPFLLRKNVGYVFQNPSSQI-IGATVEEDVAFSLEIMGLDE 114
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAG 145
++L ++S Y G VLKDV E +GKTT L+I+AG
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG 59
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+L I GE + G G GKSTLL+++ GL +P G+VL
Sbjct: 28 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 67
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 134 AGKTTQLRIIAGQEEPDSGNVI---------KAKSNMKIAFLSQEFEVSMSRTVREEFMS 184
+GK+T L+I+AG EP SG+V+ + + N+ IAF E + R V +E
Sbjct: 46 SGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAER-VFDEVAF 104
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMD 211
A K + V+KA+E D D
Sbjct: 105 AVKNFYPDRDPVPLVKKAMEFVGLDFD 131
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +K++ F Y+ ++ + + +I +G+ A++G +G GKST+ L G +
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAE 516
L H+V L +F + T+ +A AAE
Sbjct: 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 417 RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
RG ++ + L+ + + N+ I GE +IGP+G GKST L+ + LE
Sbjct: 17 RGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF 76
Query: 477 RGGEVLL 483
GE+++
Sbjct: 77 DEGEIII 83
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
N+ I GE +IGP+G GKST L+ + LE GE+++
Sbjct: 23 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 62
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 428 KNLEFGYEDRLL--FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+N+ F Y R + NL I G+ A++G +G GKST+ LI G +L+
Sbjct: 345 RNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 486 HNV 488
H++
Sbjct: 405 HDL 407
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 27/119 (22%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
+ GE ++GPNG GKSTLL + G+ +G G+ E A L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQ------PLEAWSATKLALHRA 76
Query: 507 VL---ETVAEAAEDWR--------------IDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
L +T A W ++D+ G L D L R + LSGGE
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD----DKLGRSTNQLSGGE 131
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 27/119 (22%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
+ GE ++GPNG GKSTLL + G+ +G G+ E A L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQ------PLEAWSATKLALHRA 76
Query: 507 VL---ETVAEAAEDWR--------------IDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
L +T A W ++D+ G L D L R + LSGGE
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----LDDKLGRSTNQLSGGE 131
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 95/238 (39%), Gaps = 26/238 (10%)
Query: 102 NISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
++ K Y G VLK V+ + +GK+T LR I E+P G +I N+
Sbjct: 11 DLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI 70
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK--LERVQKALESAVDDMDLMGRLLDE 219
+ VR++ ++++A K L ++ L +L +
Sbjct: 71 NL--------------VRDK-----DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL 111
Query: 220 FDLLQRKAQAVNLDTLDA--KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
++++ Q + L DA + K + ++G + S G Q R+S+ +
Sbjct: 112 ENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171
Query: 278 XXXXXXXEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
EPT+ LD + + E L L ++ MV+++H+ F + + ++ G
Sbjct: 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ +++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 484 GEHNV 488
++
Sbjct: 66 NGQDI 70
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEV 481
+T++N F + D N +I G A++G GCGKS+LL ++ ++K G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 482 LLGEHNVLP 490
+ G +P
Sbjct: 64 IKGSVAYVP 72
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 28/112 (25%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-------LGEHNVLPNYFEQNQAEALD 502
GE I+GPNG GK+T ++++G G V + PNY
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY---------- 343
Query: 503 LDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
D TV + + A++D W +++ R N +L+ V+ LSGGE
Sbjct: 344 -DGTVQQYLENASKDALSTSSWFFEEVT---KRLNLHR-LLESNVNDLSGGE 390
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 28/118 (23%)
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGE--VLLGEHNVLP--------NYFEQNQAEALD- 502
++G NG GK+T+LK++ G P G+ +G+ VL NYF++ + L
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKI 88
Query: 503 -------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
L TV E + + E + D++K LL N + ++ ++LSGG
Sbjct: 89 VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN----LWNKDANILSGG 142
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 37/123 (30%)
Query: 445 LTIERGEKT-----AIIGPNGCGKSTLLKLIMGLEKPRGGE------VLLGEHNVLPN-- 491
L +E GE + ++G NG GK+TL+KL+ G KP G+ V + + P
Sbjct: 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427
Query: 492 ------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
+F++ + + L+ + + + RIDDI +D++V LS
Sbjct: 428 GTVRQLFFKKIRGQFLN-----PQFQTDVVKPLRIDDI-------------IDQEVQHLS 469
Query: 546 GGE 548
GGE
Sbjct: 470 GGE 472
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
T G+ ++G NG GKST LK++ G +KP G
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
++L+ I + +G T+LK ++W+ AGKTT L I+ E SG V
Sbjct: 22 IQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ + + + + I +G+K + G NG GK+TLL ++ E G V L
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 27/119 (22%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
+ GE ++GPNG GKSTLL G +G G+ E A L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQ------PLEAWSATKLALHRA 76
Query: 507 VL---ETVAEAAEDWR--------------IDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
L +T A W ++D+ G L D L R + LSGGE
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD----DKLGRSTNQLSGGE 131
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 L 483
+
Sbjct: 61 I 61
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 27/119 (22%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
+ GE ++GPNG GKSTLL G +G G+ E A L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQ------PLEAWSATKLALHRA 76
Query: 507 VL---ETVAEAAEDWR--------------IDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
L +T A W ++D+ G L D L R + LSGGE
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----LDDKLGRSTNQLSGGE 131
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
F R +L TAI+GPNG GKS ++ I
Sbjct: 14 FGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501
N I G A++G G GKST+ KL+ G++ +G NV N + +N ++
Sbjct: 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNV--NKYNRNSIRSI 94
>pdb|3UQZ|A Chain A, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
pdb|3UQZ|B Chain B, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
pdb|3UQZ|C Chain C, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
Length = 288
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGC---GKSTLLKLIMGLE 474
LLF + NL + + K A++G C G ++ K+I GLE
Sbjct: 94 LLFYKGNLDLLKFPKVAVVGSRACSKQGAKSVEKVIQGLE 133
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLPNY 492
I RG T I GP GK+TL I+ + GG EH + P Y
Sbjct: 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY 118
>pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
Length = 318
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY 492
Y R F R N E+ ++ P +L +L L R V + N ++
Sbjct: 168 AYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDF 227
Query: 493 FEQNQAEALD-LDKTVLETVAEAAEDWRIDDIKGLL 527
++Q+EALD LDK T A R+++I G+L
Sbjct: 228 NARSQSEALDELDKLGFTTNKNRA---RVNNIDGVL 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,425,506
Number of Sequences: 62578
Number of extensions: 482870
Number of successful extensions: 1982
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 183
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)