Query 008771
Match_columns 554
No_of_seqs 429 out of 2810
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 16:22:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0488 Uup ATPase components 100.0 6.6E-85 1.4E-89 702.1 48.6 445 96-554 2-450 (530)
2 PRK10636 putative ABC transpor 100.0 7.3E-76 1.6E-80 655.8 51.0 440 97-554 1-441 (638)
3 PRK11147 ABC transporter ATPas 100.0 1.7E-74 3.6E-79 646.1 53.4 445 97-554 3-451 (635)
4 PRK11819 putative ABC transpor 100.0 3.5E-72 7.6E-77 619.0 54.1 448 95-554 4-456 (556)
5 PRK15064 ABC transporter ATP-b 100.0 7.6E-72 1.6E-76 613.9 52.1 447 97-554 1-449 (530)
6 KOG0927 Predicted transporter 100.0 2.8E-73 6.1E-78 586.7 35.8 445 93-554 71-520 (614)
7 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.7E-71 7.9E-76 610.8 53.8 447 96-554 3-454 (552)
8 PLN03073 ABC transporter F fam 100.0 7.9E-69 1.7E-73 601.5 52.0 444 94-554 174-638 (718)
9 COG1123 ATPase components of v 100.0 4.2E-68 9.1E-73 561.5 36.0 378 96-554 4-440 (539)
10 PRK10261 glutathione transport 100.0 1E-66 2.2E-71 581.7 37.5 397 95-554 10-474 (623)
11 PRK09700 D-allose transporter 100.0 1.1E-66 2.4E-71 570.7 35.5 376 96-554 4-420 (510)
12 PRK13549 xylose transporter AT 100.0 1.6E-66 3.5E-71 568.6 34.4 370 96-554 4-416 (506)
13 PRK15439 autoinducer 2 ABC tra 100.0 5.5E-66 1.2E-70 564.5 36.3 369 94-554 8-414 (510)
14 PRK15134 microcin C ABC transp 100.0 1.1E-65 2.3E-70 565.1 36.7 370 96-554 4-436 (529)
15 TIGR03269 met_CoM_red_A2 methy 100.0 2.6E-65 5.7E-70 561.1 38.1 357 98-554 1-438 (520)
16 TIGR02633 xylG D-xylose ABC tr 100.0 1.4E-65 3.1E-70 560.8 34.5 371 97-554 1-414 (500)
17 PRK10762 D-ribose transporter 100.0 9.9E-66 2.1E-70 561.8 32.7 366 96-554 3-406 (501)
18 PRK11288 araG L-arabinose tran 100.0 2.6E-65 5.5E-70 558.5 33.6 367 96-554 3-407 (501)
19 PRK10938 putative molybdenum t 100.0 1.3E-64 2.8E-69 551.9 33.3 367 97-554 3-412 (490)
20 PRK10982 galactose/methyl gala 100.0 7.1E-64 1.5E-68 546.1 34.0 364 100-554 1-402 (491)
21 KOG0062 ATPase component of AB 100.0 6.3E-64 1.4E-68 514.8 23.2 412 95-554 78-493 (582)
22 COG4172 ABC-type uncharacteriz 100.0 3.8E-61 8.2E-66 481.0 31.9 371 95-554 4-437 (534)
23 PRK13409 putative ATPase RIL; 100.0 6.8E-60 1.5E-64 520.6 32.4 355 102-554 78-464 (590)
24 KOG0066 eIF2-interacting prote 100.0 1.7E-59 3.7E-64 471.0 29.2 433 96-554 263-715 (807)
25 COG1129 MglA ABC-type sugar tr 100.0 6.9E-59 1.5E-63 488.5 31.2 369 95-554 6-412 (500)
26 KOG0055 Multidrug/pheromone ex 100.0 1.9E-58 4.1E-63 519.6 34.4 256 48-347 303-577 (1228)
27 COG3845 ABC-type uncharacteriz 100.0 2.7E-58 5.8E-63 474.3 31.7 371 96-554 3-414 (501)
28 COG1126 GlnQ ABC-type polar am 100.0 2.5E-55 5.5E-60 409.0 22.6 210 97-346 2-225 (240)
29 PTZ00265 multidrug resistance 100.0 1.6E-51 3.5E-56 492.0 42.0 269 50-332 339-655 (1466)
30 PLN03130 ABC transporter C fam 100.0 1.5E-50 3.4E-55 487.8 42.2 251 48-345 570-827 (1622)
31 PLN03232 ABC transporter C fam 100.0 2E-50 4.4E-55 486.4 41.2 251 48-344 570-826 (1495)
32 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-50 6E-55 485.8 42.2 251 48-344 589-848 (1522)
33 COG1125 OpuBA ABC-type proline 100.0 3.7E-51 8E-56 388.4 18.6 209 97-345 1-224 (309)
34 COG1116 TauB ABC-type nitrate/ 100.0 2.6E-50 5.6E-55 386.5 21.4 197 96-332 2-207 (248)
35 COG1135 AbcC ABC-type metal io 100.0 2.8E-50 6.1E-55 393.4 21.1 208 97-345 1-230 (339)
36 COG1127 Ttg2A ABC-type transpo 100.0 7.5E-50 1.6E-54 378.0 21.5 219 95-352 6-241 (263)
37 TIGR01257 rim_protein retinal- 100.0 2.4E-47 5.1E-52 456.6 45.3 201 95-335 926-1139(2272)
38 COG1124 DppF ABC-type dipeptid 100.0 2.4E-49 5.3E-54 376.3 20.9 200 96-336 2-222 (252)
39 PTZ00243 ABC transporter; Prov 100.0 1.2E-47 2.7E-52 462.0 41.0 196 106-345 669-869 (1560)
40 COG1120 FepC ABC-type cobalami 100.0 1.7E-48 3.7E-53 380.9 20.3 212 97-345 2-227 (258)
41 TIGR01271 CFTR_protein cystic 100.0 3E-46 6.6E-51 449.6 44.1 184 110-335 439-626 (1490)
42 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.4E-48 9.5E-53 376.1 21.7 214 95-346 2-227 (254)
43 COG3842 PotA ABC-type spermidi 100.0 3.8E-48 8.2E-53 394.3 19.6 212 96-347 4-227 (352)
44 COG1136 SalX ABC-type antimicr 100.0 2.3E-47 5E-52 366.0 23.2 198 97-334 1-220 (226)
45 COG1118 CysA ABC-type sulfate/ 100.0 7.7E-48 1.7E-52 375.4 18.0 210 97-345 2-226 (345)
46 COG3839 MalK ABC-type sugar tr 100.0 2.2E-47 4.7E-52 386.8 21.7 203 96-338 2-216 (338)
47 COG3638 ABC-type phosphate/pho 100.0 8.4E-47 1.8E-51 356.3 20.2 215 96-343 2-234 (258)
48 TIGR00956 3a01205 Pleiotropic 100.0 1.3E-45 2.8E-50 440.9 35.6 199 110-342 74-296 (1394)
49 COG2884 FtsE Predicted ATPase 100.0 6.9E-47 1.5E-51 344.9 18.2 202 97-338 1-219 (223)
50 COG1122 CbiO ABC-type cobalt t 100.0 2.6E-46 5.6E-51 365.2 22.4 210 96-346 2-228 (235)
51 TIGR02314 ABC_MetN D-methionin 100.0 9.5E-46 2.1E-50 382.4 24.8 209 97-346 1-230 (343)
52 PRK13537 nodulation ABC transp 100.0 1.2E-45 2.6E-50 378.0 25.3 208 96-344 6-225 (306)
53 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-45 4E-50 363.6 24.1 207 98-344 1-224 (235)
54 TIGR00960 3a0501s02 Type II (G 100.0 1.8E-45 3.8E-50 359.0 22.7 197 97-333 1-215 (216)
55 PRK11650 ugpC glycerol-3-phosp 100.0 3.7E-45 7.9E-50 380.8 25.3 209 97-346 3-224 (356)
56 COG4555 NatA ABC-type Na+ tran 100.0 5.3E-46 1.1E-50 341.9 16.6 208 97-345 1-221 (245)
57 PRK11432 fbpC ferric transport 100.0 4.4E-45 9.6E-50 379.2 25.7 210 95-345 4-225 (351)
58 COG1131 CcmA ABC-type multidru 100.0 5.7E-45 1.2E-49 369.9 25.3 208 96-344 3-224 (293)
59 cd03259 ABC_Carb_Solutes_like 100.0 3.9E-45 8.5E-50 355.8 23.2 198 98-335 1-210 (213)
60 TIGR03265 PhnT2 putative 2-ami 100.0 5.2E-45 1.1E-49 379.2 24.9 210 96-346 3-224 (353)
61 KOG0054 Multidrug resistance-a 100.0 9E-44 2E-48 409.8 37.3 256 46-346 470-731 (1381)
62 PRK13536 nodulation factor exp 100.0 8.3E-45 1.8E-49 375.9 25.9 209 95-344 39-259 (340)
63 cd03265 ABC_DrrA DrrA is the A 100.0 9.1E-45 2E-49 355.0 24.3 203 98-341 1-216 (220)
64 TIGR01288 nodI ATP-binding ABC 100.0 9E-45 1.9E-49 371.7 25.1 208 96-344 3-222 (303)
65 PRK09452 potA putrescine/sperm 100.0 1.6E-44 3.4E-49 377.6 25.8 212 94-346 11-234 (375)
66 PRK11000 maltose/maltodextrin 100.0 2.2E-44 4.8E-49 377.2 25.2 208 97-345 3-222 (369)
67 TIGR03258 PhnT 2-aminoethylpho 100.0 2.1E-44 4.5E-49 375.4 24.8 209 97-346 5-228 (362)
68 PRK11607 potG putrescine trans 100.0 3.8E-44 8.2E-49 375.4 26.7 212 94-346 16-239 (377)
69 PRK11831 putative ABC transpor 100.0 2.6E-44 5.7E-49 362.3 24.4 211 95-345 5-232 (269)
70 PRK10851 sulfate/thiosulfate t 100.0 3.1E-44 6.8E-49 373.4 25.6 213 97-346 2-226 (353)
71 cd03301 ABC_MalK_N The N-termi 100.0 2.4E-44 5.3E-49 350.2 23.0 199 98-336 1-211 (213)
72 TIGR03522 GldA_ABC_ATP gliding 100.0 4.1E-44 8.9E-49 366.3 25.8 207 97-344 2-219 (301)
73 cd03296 ABC_CysA_sulfate_impor 100.0 3E-44 6.5E-49 355.8 24.0 211 97-344 2-224 (239)
74 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.9E-44 4.1E-49 352.2 22.1 195 98-333 1-217 (218)
75 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.6E-44 7.8E-49 350.8 23.9 198 98-335 1-213 (220)
76 TIGR02673 FtsE cell division A 100.0 2.5E-44 5.5E-49 350.3 22.6 197 97-333 1-214 (214)
77 cd03226 ABC_cobalt_CbiO_domain 100.0 1.5E-44 3.3E-49 349.6 20.9 192 99-334 1-204 (205)
78 COG0411 LivG ABC-type branched 100.0 8.7E-45 1.9E-49 345.5 18.5 223 96-347 3-240 (250)
79 PRK11153 metN DL-methionine tr 100.0 4.4E-44 9.4E-49 371.9 25.1 207 97-344 1-228 (343)
80 cd03269 ABC_putative_ATPase Th 100.0 4.7E-44 1E-48 347.4 23.7 198 98-335 1-207 (210)
81 COG1123 ATPase components of v 100.0 4.2E-44 9E-49 379.1 25.1 243 63-344 236-517 (539)
82 cd03266 ABC_NatA_sodium_export 100.0 3.8E-44 8.2E-49 350.1 22.7 199 97-335 1-215 (218)
83 PRK10619 histidine/lysine/argi 100.0 8.5E-44 1.8E-48 356.4 25.8 211 96-345 4-240 (257)
84 PRK11247 ssuB aliphatic sulfon 100.0 4.4E-44 9.6E-49 357.5 23.5 198 96-340 11-217 (257)
85 cd03219 ABC_Mj1267_LivG_branch 100.0 4.9E-44 1.1E-48 353.5 23.5 216 98-344 1-230 (236)
86 COG1117 PstB ABC-type phosphat 100.0 8.3E-45 1.8E-49 337.1 16.6 203 96-338 6-230 (253)
87 PRK13651 cobalt transporter AT 100.0 6E-44 1.3E-48 364.9 24.2 210 97-346 2-254 (305)
88 PRK15079 oligopeptide ABC tran 100.0 8.5E-44 1.9E-48 367.3 25.4 213 95-345 6-250 (331)
89 PLN03140 ABC transporter G fam 100.0 2E-43 4.3E-48 420.8 32.1 224 110-344 178-425 (1470)
90 PRK11264 putative amino-acid A 100.0 1E-43 2.2E-48 354.3 24.9 209 97-345 3-232 (250)
91 PRK09493 glnQ glutamine ABC tr 100.0 8.7E-44 1.9E-48 352.7 24.1 209 97-345 1-224 (240)
92 PRK13634 cbiO cobalt transport 100.0 7E-44 1.5E-48 362.7 23.9 209 98-346 3-235 (290)
93 PRK11248 tauB taurine transpor 100.0 8.1E-44 1.8E-48 355.8 23.8 199 97-335 1-210 (255)
94 cd03268 ABC_BcrA_bacitracin_re 100.0 7.3E-44 1.6E-48 345.6 22.8 194 98-335 1-205 (208)
95 cd03263 ABC_subfamily_A The AB 100.0 8.6E-44 1.9E-48 348.1 23.5 204 98-342 1-217 (220)
96 cd03258 ABC_MetN_methionine_tr 100.0 9E-44 1.9E-48 351.0 23.6 207 97-344 1-228 (233)
97 cd03218 ABC_YhbG The ABC trans 100.0 1.1E-43 2.3E-48 350.2 23.9 206 98-344 1-220 (232)
98 PRK13643 cbiO cobalt transport 100.0 9.9E-44 2.2E-48 361.3 24.3 210 97-346 1-233 (288)
99 cd03264 ABC_drug_resistance_li 100.0 1.2E-43 2.6E-48 344.9 23.7 197 98-335 1-208 (211)
100 PRK10908 cell division protein 100.0 1.4E-43 3E-48 347.2 24.2 199 97-335 1-216 (222)
101 TIGR02315 ABC_phnC phosphonate 100.0 7.5E-44 1.6E-48 353.8 22.3 215 97-344 1-233 (243)
102 cd03262 ABC_HisP_GlnQ_permease 100.0 7.6E-44 1.7E-48 346.6 21.9 197 98-333 1-212 (213)
103 cd03256 ABC_PhnC_transporter A 100.0 1.1E-43 2.4E-48 352.1 23.4 214 98-344 1-232 (241)
104 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-43 2.6E-48 352.1 23.6 207 98-344 1-223 (242)
105 cd03292 ABC_FtsE_transporter F 100.0 8.5E-44 1.8E-48 346.6 22.0 196 98-333 1-213 (214)
106 PRK13637 cbiO cobalt transport 100.0 1.5E-43 3.3E-48 359.7 24.5 210 97-346 2-234 (287)
107 PRK11147 ABC transporter ATPas 100.0 1.8E-43 4E-48 395.8 27.4 211 94-346 316-528 (635)
108 PRK11124 artP arginine transpo 100.0 2.1E-43 4.5E-48 350.4 24.8 208 97-344 2-228 (242)
109 COG1137 YhbG ABC-type (unclass 100.0 6.4E-45 1.4E-49 334.3 12.7 211 96-347 3-229 (243)
110 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.2E-43 4.9E-48 348.9 24.6 207 97-345 1-220 (236)
111 PRK09536 btuD corrinoid ABC tr 100.0 1.6E-43 3.4E-48 372.3 24.7 211 96-345 2-227 (402)
112 PRK13647 cbiO cobalt transport 100.0 1.6E-43 3.5E-48 357.3 23.8 207 96-343 3-224 (274)
113 PRK10584 putative ABC transpor 100.0 2.5E-43 5.4E-48 346.7 24.6 199 96-335 5-225 (228)
114 cd03225 ABC_cobalt_CbiO_domain 100.0 9.9E-44 2.1E-48 345.4 21.4 195 99-333 1-211 (211)
115 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-43 4.1E-48 345.9 23.2 196 98-334 2-219 (221)
116 PRK11308 dppF dipeptide transp 100.0 2.8E-43 6.1E-48 363.1 25.3 212 95-345 3-243 (327)
117 TIGR01188 drrA daunorubicin re 100.0 1.5E-43 3.2E-48 362.5 23.0 199 105-344 1-211 (302)
118 PRK13641 cbiO cobalt transport 100.0 2.7E-43 5.8E-48 358.0 24.6 209 97-345 2-233 (287)
119 PRK14250 phosphate ABC transpo 100.0 2.8E-43 6E-48 349.3 23.8 204 96-344 2-219 (241)
120 PRK11629 lolD lipoprotein tran 100.0 3.4E-43 7.3E-48 346.9 24.1 199 96-335 4-224 (233)
121 PRK13631 cbiO cobalt transport 100.0 3.1E-43 6.7E-48 361.8 24.7 214 93-346 17-265 (320)
122 PRK13646 cbiO cobalt transport 100.0 2.2E-43 4.7E-48 358.6 23.2 210 97-346 2-235 (286)
123 cd03224 ABC_TM1139_LivF_branch 100.0 2.4E-43 5.2E-48 345.3 22.6 203 98-343 1-218 (222)
124 cd03235 ABC_Metallic_Cations A 100.0 1.5E-43 3.2E-48 344.7 20.9 199 99-333 1-209 (213)
125 TIGR03411 urea_trans_UrtD urea 100.0 4.5E-43 9.7E-48 348.0 24.8 216 97-345 2-230 (242)
126 PRK10895 lipopolysaccharide AB 100.0 2.7E-43 5.8E-48 349.4 23.1 209 97-345 3-225 (241)
127 cd03260 ABC_PstB_phosphate_tra 100.0 2E-43 4.3E-48 347.2 21.6 202 98-340 1-223 (227)
128 cd03257 ABC_NikE_OppD_transpor 100.0 3.2E-43 6.8E-48 345.8 22.9 201 97-335 1-225 (228)
129 TIGR00972 3a0107s01c2 phosphat 100.0 5.3E-43 1.1E-47 348.6 24.7 208 97-344 1-230 (247)
130 COG0488 Uup ATPase components 100.0 3.3E-43 7.2E-48 379.0 24.9 209 93-348 317-527 (530)
131 PRK13548 hmuV hemin importer A 100.0 5.2E-43 1.1E-47 350.7 24.3 208 97-345 2-229 (258)
132 PRK10070 glycine betaine trans 100.0 4.6E-43 9.9E-48 368.5 24.8 204 101-345 32-253 (400)
133 TIGR02769 nickel_nikE nickel i 100.0 5.2E-43 1.1E-47 352.1 24.1 209 97-344 2-238 (265)
134 TIGR01978 sufC FeS assembly AT 100.0 6.1E-43 1.3E-47 347.2 24.1 213 98-343 1-231 (243)
135 PRK11701 phnK phosphonate C-P 100.0 7.8E-43 1.7E-47 349.6 24.9 210 96-344 5-239 (258)
136 COG3840 ThiQ ABC-type thiamine 100.0 8.1E-44 1.7E-48 322.3 15.8 209 97-348 1-221 (231)
137 TIGR03005 ectoine_ehuA ectoine 100.0 5.7E-43 1.2E-47 349.4 23.6 208 98-345 1-235 (252)
138 PRK10636 putative ABC transpor 100.0 1.3E-42 2.9E-47 388.2 29.1 207 94-346 309-517 (638)
139 COG2274 SunT ABC-type bacterio 100.0 3.1E-43 6.6E-48 390.8 23.7 256 48-347 428-697 (709)
140 PRK15112 antimicrobial peptide 100.0 6.4E-43 1.4E-47 351.8 23.8 212 96-346 3-239 (267)
141 PRK14247 phosphate ABC transpo 100.0 1.2E-42 2.5E-47 346.8 25.3 211 97-345 3-233 (250)
142 PRK09984 phosphonate/organopho 100.0 6.6E-43 1.4E-47 350.9 23.6 217 95-344 2-240 (262)
143 TIGR03410 urea_trans_UrtE urea 100.0 4.5E-43 9.8E-48 345.3 21.8 203 98-343 1-218 (230)
144 PRK13636 cbiO cobalt transport 100.0 9.1E-43 2E-47 353.5 24.5 210 96-346 4-231 (283)
145 PRK13638 cbiO cobalt transport 100.0 5.1E-43 1.1E-47 353.4 22.5 208 97-345 1-224 (271)
146 PRK14242 phosphate transporter 100.0 1.2E-42 2.6E-47 347.2 25.0 210 95-344 4-235 (253)
147 PRK11022 dppD dipeptide transp 100.0 1E-42 2.3E-47 359.0 25.3 210 97-345 3-242 (326)
148 PRK09473 oppD oligopeptide tra 100.0 1.6E-42 3.4E-47 358.0 26.2 214 94-346 9-251 (330)
149 PRK11819 putative ABC transpor 100.0 1.7E-42 3.7E-47 382.8 28.0 214 95-350 322-537 (556)
150 PRK11300 livG leucine/isoleuci 100.0 1.1E-42 2.3E-47 348.1 23.7 223 96-344 4-241 (255)
151 PRK11231 fecE iron-dicitrate t 100.0 1.1E-42 2.3E-47 348.0 23.4 211 97-344 2-225 (255)
152 TIGR01186 proV glycine betaine 100.0 8.2E-43 1.8E-47 362.5 23.4 201 105-346 1-219 (363)
153 PRK14267 phosphate ABC transpo 100.0 1.8E-42 3.9E-47 346.0 25.0 211 96-344 3-235 (253)
154 PRK13649 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 352.3 24.1 208 97-344 2-232 (280)
155 PRK10575 iron-hydroxamate tran 100.0 1.1E-42 2.4E-47 349.8 23.5 212 96-344 10-235 (265)
156 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6E-43 1.3E-47 352.3 21.4 206 99-345 26-249 (269)
157 PRK13650 cbiO cobalt transport 100.0 1.2E-42 2.5E-47 351.9 23.4 208 97-346 4-229 (279)
158 PRK14268 phosphate ABC transpo 100.0 2.3E-42 5E-47 346.2 25.1 208 96-344 11-240 (258)
159 PRK10253 iron-enterobactin tra 100.0 1.3E-42 2.9E-47 349.2 23.5 212 96-344 6-231 (265)
160 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-42 2.6E-47 337.9 22.3 196 98-335 1-208 (211)
161 COG0444 DppD ABC-type dipeptid 100.0 1.6E-42 3.5E-47 343.6 23.5 209 98-345 2-242 (316)
162 PRK11614 livF leucine/isoleuci 100.0 1.2E-42 2.6E-47 343.9 22.6 207 96-345 4-225 (237)
163 TIGR02323 CP_lyasePhnK phospho 100.0 2.5E-42 5.4E-47 345.0 24.7 211 96-345 2-237 (253)
164 PRK15093 antimicrobial peptide 100.0 2E-42 4.3E-47 357.8 24.8 216 96-345 2-247 (330)
165 PRK13652 cbiO cobalt transport 100.0 2.1E-42 4.6E-47 349.8 24.3 210 96-346 2-227 (277)
166 PRK14273 phosphate ABC transpo 100.0 2.6E-42 5.6E-47 345.1 24.7 209 96-344 6-236 (254)
167 PRK14241 phosphate transporter 100.0 3.3E-42 7.1E-47 345.1 25.4 210 97-345 4-241 (258)
168 KOG0058 Peptide exporter, ABC 100.0 1.1E-42 2.4E-47 373.2 23.3 257 46-348 418-693 (716)
169 PRK13645 cbiO cobalt transport 100.0 1.8E-42 3.9E-47 352.5 23.8 209 96-344 5-238 (289)
170 COG4152 ABC-type uncharacteriz 100.0 4.5E-43 9.7E-48 331.2 17.7 206 97-343 2-216 (300)
171 PRK10247 putative ABC transpor 100.0 1.4E-42 3.1E-47 340.6 21.8 193 95-330 5-211 (225)
172 PRK10744 pstB phosphate transp 100.0 3.4E-42 7.4E-47 345.3 24.9 211 95-345 11-243 (260)
173 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.4E-42 7.5E-47 380.3 27.2 213 95-349 320-534 (552)
174 TIGR03873 F420-0_ABC_ATP propo 100.0 2.4E-42 5.2E-47 345.7 23.4 210 98-344 2-224 (256)
175 PRK14256 phosphate ABC transpo 100.0 4.1E-42 9E-47 343.2 24.8 210 96-344 3-234 (252)
176 PRK10771 thiQ thiamine transpo 100.0 3E-42 6.6E-47 339.9 23.1 207 97-346 1-219 (232)
177 PRK14248 phosphate ABC transpo 100.0 4.9E-42 1.1E-46 345.7 24.9 210 95-344 19-250 (268)
178 COG4598 HisP ABC-type histidin 100.0 2.7E-43 5.8E-48 317.9 14.0 210 96-345 5-240 (256)
179 PRK13644 cbiO cobalt transport 100.0 4E-42 8.6E-47 347.2 24.0 208 97-346 1-224 (274)
180 PRK13543 cytochrome c biogenes 100.0 3.3E-42 7.2E-47 335.5 22.4 194 95-331 9-212 (214)
181 PRK14245 phosphate ABC transpo 100.0 6.6E-42 1.4E-46 341.3 24.8 210 96-345 2-233 (250)
182 PRK13639 cbiO cobalt transport 100.0 5.2E-42 1.1E-46 346.6 24.2 208 97-345 1-225 (275)
183 TIGR03740 galliderm_ABC gallid 100.0 4.1E-42 8.9E-47 337.0 22.8 199 98-341 1-208 (223)
184 COG4175 ProV ABC-type proline/ 100.0 1E-42 2.3E-47 339.7 18.3 211 96-347 3-255 (386)
185 PRK14235 phosphate transporter 100.0 7.6E-42 1.6E-46 344.0 25.3 211 95-344 17-249 (267)
186 cd03300 ABC_PotA_N PotA is an 100.0 6.4E-42 1.4E-46 337.6 23.9 206 98-344 1-218 (232)
187 PRK13635 cbiO cobalt transport 100.0 4.3E-42 9.3E-47 347.7 23.1 209 96-346 4-229 (279)
188 PRK14269 phosphate ABC transpo 100.0 1.1E-41 2.3E-46 338.9 24.8 209 97-344 2-228 (246)
189 PRK11144 modC molybdate transp 100.0 6.3E-42 1.4E-46 357.0 24.1 198 97-344 1-216 (352)
190 PRK14251 phosphate ABC transpo 100.0 9.3E-42 2E-46 340.4 24.2 209 96-344 3-233 (251)
191 PRK15064 ABC transporter ATP-b 100.0 8.5E-42 1.8E-46 375.7 26.1 209 95-348 317-527 (530)
192 PRK09544 znuC high-affinity zi 100.0 8E-42 1.7E-46 340.4 23.3 199 96-344 3-207 (251)
193 COG0410 LivF ABC-type branched 100.0 9.4E-42 2E-46 322.4 22.4 211 96-347 2-227 (237)
194 cd03297 ABC_ModC_molybdenum_tr 100.0 7.3E-42 1.6E-46 333.1 22.4 192 98-335 2-211 (214)
195 PRK14239 phosphate transporter 100.0 1.3E-41 2.9E-46 339.5 24.8 209 96-344 4-234 (252)
196 PRK14270 phosphate ABC transpo 100.0 1.2E-41 2.5E-46 339.7 24.2 210 95-344 2-233 (251)
197 PRK14237 phosphate transporter 100.0 1.5E-41 3.3E-46 341.8 25.2 211 95-345 18-250 (267)
198 PRK14274 phosphate ABC transpo 100.0 1.4E-41 3E-46 340.8 24.7 211 95-345 10-242 (259)
199 PRK14272 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 339.1 24.8 209 97-344 4-234 (252)
200 PRK14240 phosphate transporter 100.0 1.6E-41 3.5E-46 338.5 24.7 208 97-344 3-232 (250)
201 PRK10419 nikE nickel transport 100.0 1.5E-41 3.3E-46 342.0 24.4 207 97-342 3-237 (268)
202 TIGR03608 L_ocin_972_ABC putat 100.0 6.6E-42 1.4E-46 331.3 20.9 189 100-329 1-206 (206)
203 cd03299 ABC_ModC_like Archeal 100.0 1.4E-41 2.9E-46 335.9 23.6 205 98-344 1-217 (235)
204 TIGR02324 CP_lyasePhnL phospho 100.0 1.1E-41 2.4E-46 334.2 22.6 195 97-330 1-223 (224)
205 COG4181 Predicted ABC-type tra 100.0 6E-42 1.3E-46 307.1 18.6 198 97-335 6-225 (228)
206 TIGR02142 modC_ABC molybdenum 100.0 1.2E-41 2.7E-46 355.3 24.0 197 102-343 4-218 (354)
207 PRK14259 phosphate ABC transpo 100.0 2.3E-41 5E-46 340.8 25.0 197 94-331 10-228 (269)
208 PRK10418 nikD nickel transport 100.0 2.3E-41 4.9E-46 338.2 24.8 207 96-345 3-229 (254)
209 PRK13633 cobalt transporter AT 100.0 1.2E-41 2.6E-46 344.9 23.0 209 95-345 2-232 (280)
210 TIGR01277 thiQ thiamine ABC tr 100.0 1.2E-41 2.5E-46 331.4 22.1 196 98-335 1-208 (213)
211 PRK14275 phosphate ABC transpo 100.0 2.8E-41 6.1E-46 342.9 25.8 210 95-344 37-268 (286)
212 PRK13538 cytochrome c biogenes 100.0 9.6E-42 2.1E-46 329.8 21.1 190 97-329 1-202 (204)
213 PRK14254 phosphate ABC transpo 100.0 3.9E-41 8.4E-46 341.6 26.4 209 94-344 36-267 (285)
214 PRK13632 cbiO cobalt transport 100.0 1.2E-41 2.7E-46 343.2 22.6 207 96-344 6-229 (271)
215 TIGR00968 3a0106s01 sulfate AB 100.0 2E-41 4.4E-46 335.1 23.7 206 98-344 1-218 (237)
216 PRK14271 phosphate ABC transpo 100.0 2.6E-41 5.5E-46 341.5 24.6 210 95-344 19-249 (276)
217 PRK14262 phosphate ABC transpo 100.0 2.7E-41 5.9E-46 336.9 24.5 208 97-344 3-232 (250)
218 TIGR03415 ABC_choXWV_ATP choli 100.0 1E-41 2.2E-46 355.9 22.2 205 101-346 28-254 (382)
219 PRK14249 phosphate ABC transpo 100.0 3.2E-41 6.9E-46 336.6 24.8 208 96-343 3-232 (251)
220 COG4172 ABC-type uncharacteriz 100.0 2E-41 4.3E-46 339.5 22.9 244 64-346 240-516 (534)
221 PRK13547 hmuV hemin importer A 100.0 2.4E-41 5.2E-46 340.6 23.5 210 97-343 1-241 (272)
222 PRK14255 phosphate ABC transpo 100.0 3.5E-41 7.6E-46 336.5 24.5 203 96-337 4-228 (252)
223 PRK13640 cbiO cobalt transport 100.0 1.9E-41 4.1E-46 343.6 22.8 209 96-346 4-232 (282)
224 PRK09580 sufC cysteine desulfu 100.0 2.9E-41 6.2E-46 336.3 23.7 213 97-342 1-231 (248)
225 PRK13642 cbiO cobalt transport 100.0 2.3E-41 5E-46 342.2 23.4 209 96-346 3-229 (277)
226 PRK13648 cbiO cobalt transport 100.0 1.9E-41 4.2E-46 341.5 22.5 207 96-344 6-229 (269)
227 PRK14253 phosphate ABC transpo 100.0 3.7E-41 8.1E-46 335.7 24.1 208 97-344 3-231 (249)
228 PRK14238 phosphate transporter 100.0 3.2E-41 6.9E-46 340.1 23.7 210 95-344 22-253 (271)
229 cd03267 ABC_NatA_like Similar 100.0 1.9E-41 4.2E-46 335.0 21.7 191 105-335 29-233 (236)
230 PRK10261 glutathione transport 100.0 2.5E-41 5.5E-46 377.5 25.3 212 95-345 311-552 (623)
231 TIGR02982 heterocyst_DevA ABC 100.0 3E-41 6.6E-46 330.1 22.7 197 98-334 2-219 (220)
232 cd03231 ABC_CcmA_heme_exporter 100.0 1.7E-41 3.7E-46 327.3 20.5 186 98-329 1-198 (201)
233 PRK14260 phosphate ABC transpo 100.0 6.3E-41 1.4E-45 336.0 24.7 209 96-344 6-241 (259)
234 COG1245 Predicted ATPase, RNas 100.0 6.8E-41 1.5E-45 339.9 24.9 376 102-554 79-466 (591)
235 PRK14246 phosphate ABC transpo 100.0 6.1E-41 1.3E-45 335.4 23.8 212 95-345 8-240 (257)
236 CHL00131 ycf16 sulfate ABC tra 100.0 7.1E-41 1.5E-45 334.3 24.0 214 96-342 6-237 (252)
237 PRK14236 phosphate transporter 100.0 1E-40 2.2E-45 336.7 25.4 211 95-345 23-255 (272)
238 PRK14244 phosphate ABC transpo 100.0 9E-41 2E-45 333.3 24.4 208 98-344 6-235 (251)
239 PRK14261 phosphate ABC transpo 100.0 9.7E-41 2.1E-45 333.5 24.6 210 95-344 4-235 (253)
240 cd03245 ABCC_bacteriocin_expor 100.0 3.7E-41 8.1E-46 329.4 20.8 191 98-335 3-217 (220)
241 COG4525 TauB ABC-type taurine 100.0 2.2E-41 4.8E-46 309.5 16.8 200 96-335 2-214 (259)
242 PRK14258 phosphate ABC transpo 100.0 1.6E-40 3.4E-45 333.4 24.7 210 96-345 6-244 (261)
243 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-40 3.3E-45 376.6 27.6 256 48-347 407-674 (686)
244 PRK14243 phosphate transporter 100.0 1.4E-40 3E-45 334.3 24.1 208 96-345 9-247 (264)
245 PRK11174 cysteine/glutathione 100.0 2E-40 4.3E-45 369.7 27.6 257 48-348 303-574 (588)
246 cd03254 ABCC_Glucan_exporter_l 100.0 7.6E-41 1.7E-45 329.2 21.4 210 97-346 2-226 (229)
247 PRK14265 phosphate ABC transpo 100.0 2E-40 4.3E-45 334.8 25.0 209 95-345 18-257 (274)
248 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-40 2.8E-45 378.7 26.1 261 48-346 425-700 (710)
249 PRK15056 manganese/iron transp 100.0 1.1E-40 2.3E-45 336.5 22.6 210 97-344 6-228 (272)
250 cd03230 ABC_DR_subfamily_A Thi 100.0 1.1E-40 2.3E-45 314.1 20.9 160 98-333 1-172 (173)
251 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-40 3.1E-45 365.2 25.1 209 95-344 277-515 (520)
252 cd03251 ABCC_MsbA MsbA is an e 100.0 1.1E-40 2.4E-45 329.2 21.7 208 98-345 1-224 (234)
253 cd03252 ABCC_Hemolysin The ABC 100.0 1.5E-40 3.2E-45 328.9 21.8 209 98-346 1-225 (237)
254 PRK13539 cytochrome c biogenes 100.0 1.3E-40 2.8E-45 322.6 20.4 189 97-331 2-200 (207)
255 KOG0057 Mitochondrial Fe/S clu 100.0 3.6E-40 7.8E-45 342.7 24.7 244 57-346 316-574 (591)
256 PRK10790 putative multidrug tr 100.0 4E-40 8.7E-45 367.4 26.9 255 48-347 297-564 (592)
257 TIGR01184 ntrCD nitrate transp 100.0 1.1E-40 2.3E-45 328.4 19.6 185 113-335 1-194 (230)
258 PRK13540 cytochrome c biogenes 100.0 1.6E-40 3.4E-45 320.3 20.2 185 97-327 1-197 (200)
259 PRK14252 phosphate ABC transpo 100.0 5.4E-40 1.2E-44 330.3 24.9 210 95-344 14-247 (265)
260 cd03229 ABC_Class3 This class 100.0 1.7E-40 3.6E-45 314.2 19.8 162 98-333 1-178 (178)
261 PRK14266 phosphate ABC transpo 100.0 5.1E-40 1.1E-44 327.7 24.3 208 97-344 3-232 (250)
262 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.6E-40 3.5E-45 325.8 20.3 196 98-335 23-221 (224)
263 PRK14264 phosphate ABC transpo 100.0 6E-40 1.3E-44 336.1 24.9 224 93-345 41-288 (305)
264 COG4987 CydC ABC-type transpor 100.0 8.3E-41 1.8E-45 347.2 18.6 241 57-346 301-561 (573)
265 cd03223 ABCD_peroxisomal_ALDP 100.0 3.2E-40 7E-45 308.6 20.9 163 98-333 1-164 (166)
266 cd03248 ABCC_TAP TAP, the Tran 100.0 2.4E-40 5.2E-45 325.1 20.9 200 95-333 9-225 (226)
267 TIGR00958 3a01208 Conjugate Tr 100.0 5.3E-40 1.2E-44 372.6 26.7 257 48-346 433-702 (711)
268 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.4E-40 7.4E-45 326.6 21.5 207 98-344 1-224 (238)
269 TIGR03375 type_I_sec_LssB type 100.0 6.7E-40 1.4E-44 371.8 26.3 258 48-346 417-688 (694)
270 PLN03073 ABC transporter F fam 100.0 6.1E-40 1.3E-44 368.4 25.5 208 95-346 506-714 (718)
271 PRK14257 phosphate ABC transpo 100.0 9.4E-40 2E-44 337.0 24.8 211 95-345 78-312 (329)
272 PRK11160 cysteine/glutathione 100.0 6.7E-40 1.5E-44 363.7 25.4 251 54-347 299-563 (574)
273 PRK15134 microcin C ABC transp 100.0 3.6E-40 7.8E-45 362.7 23.1 212 95-345 273-514 (529)
274 PRK11176 lipid transporter ATP 100.0 6.2E-40 1.3E-44 365.4 25.2 258 48-347 297-568 (582)
275 COG4988 CydD ABC-type transpor 100.0 4.8E-40 1E-44 346.9 22.7 249 57-347 282-544 (559)
276 TIGR01189 ccmA heme ABC export 100.0 2.9E-40 6.2E-45 318.0 19.2 185 98-328 1-197 (198)
277 cd03234 ABCG_White The White s 100.0 5.4E-40 1.2E-44 322.6 21.6 202 97-335 3-223 (226)
278 PRK14263 phosphate ABC transpo 100.0 1.8E-39 3.9E-44 325.6 25.8 209 95-345 6-244 (261)
279 cd03250 ABCC_MRP_domain1 Domai 100.0 6.1E-40 1.3E-44 317.2 21.6 193 98-333 1-204 (204)
280 TIGR01193 bacteriocin_ABC ABC- 100.0 8.1E-40 1.8E-44 371.9 25.8 259 48-346 427-697 (708)
281 PRK13549 xylose transporter AT 100.0 1.9E-40 4E-45 363.1 19.8 213 96-343 258-491 (506)
282 PRK13657 cyclic beta-1,2-gluca 100.0 1.2E-39 2.7E-44 363.1 26.3 252 50-346 290-558 (588)
283 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.8E-40 1.5E-44 329.8 21.6 198 98-346 3-225 (275)
284 cd03253 ABCC_ATM1_transporter 100.0 1.1E-39 2.3E-44 322.6 22.1 208 98-345 1-223 (236)
285 cd03244 ABCC_MRP_domain2 Domai 100.0 9.1E-40 2E-44 319.8 21.2 200 98-335 3-216 (221)
286 COG1132 MdlB ABC-type multidru 100.0 1.6E-39 3.4E-44 360.7 25.7 257 48-347 284-553 (567)
287 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.7E-39 3.7E-44 314.8 22.7 185 96-336 5-203 (207)
288 cd03215 ABC_Carb_Monos_II This 100.0 7.8E-40 1.7E-44 310.7 19.6 162 96-333 3-181 (182)
289 PRK13546 teichoic acids export 100.0 6.5E-39 1.4E-43 321.4 27.1 207 97-347 4-233 (264)
290 cd03247 ABCC_cytochrome_bd The 100.0 1.1E-39 2.3E-44 308.7 20.1 162 98-335 1-175 (178)
291 PRK09700 D-allose transporter 100.0 5.3E-40 1.1E-44 360.0 20.5 209 96-336 264-489 (510)
292 COG4608 AppF ABC-type oligopep 100.0 5.7E-40 1.2E-44 319.1 18.3 182 96-344 3-197 (268)
293 PRK13545 tagH teichoic acids e 100.0 3.7E-39 7.9E-44 342.9 25.9 209 95-347 19-233 (549)
294 TIGR02633 xylG D-xylose ABC tr 100.0 6.5E-40 1.4E-44 358.5 20.5 206 96-335 256-482 (500)
295 COG4161 ArtP ABC-type arginine 100.0 6.2E-40 1.4E-44 291.2 16.4 208 97-344 2-228 (242)
296 TIGR02770 nickel_nikD nickel i 100.0 1.6E-39 3.5E-44 320.1 21.2 194 112-345 1-214 (230)
297 cd03246 ABCC_Protease_Secretio 100.0 1.3E-39 2.8E-44 306.7 19.4 157 98-333 1-172 (173)
298 cd03214 ABC_Iron-Siderophores_ 100.0 5.6E-40 1.2E-44 311.2 17.0 173 99-335 1-177 (180)
299 cd03213 ABCG_EPDR ABCG transpo 100.0 2.8E-39 6.1E-44 310.0 21.7 170 97-335 3-191 (194)
300 cd03232 ABC_PDR_domain2 The pl 100.0 3E-39 6.5E-44 309.3 21.6 170 97-335 3-189 (192)
301 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.2E-39 4.8E-44 312.3 20.5 170 98-339 1-187 (200)
302 PRK03695 vitamin B12-transport 100.0 1.8E-39 3.9E-44 323.2 20.5 199 99-344 2-220 (248)
303 COG4559 ABC-type hemin transpo 100.0 1.7E-39 3.7E-44 301.2 18.2 209 97-346 1-230 (259)
304 TIGR01842 type_I_sec_PrtD type 100.0 6E-39 1.3E-43 354.3 25.9 252 48-345 273-541 (544)
305 KOG0055 Multidrug/pheromone ex 100.0 2.6E-39 5.6E-44 365.1 23.1 255 49-347 941-1214(1228)
306 TIGR01192 chvA glucan exporter 100.0 7E-39 1.5E-43 356.1 25.9 259 48-347 288-559 (585)
307 cd03288 ABCC_SUR2 The SUR doma 100.0 8.4E-39 1.8E-43 320.2 23.9 214 92-346 14-243 (257)
308 cd03290 ABCC_SUR1_N The SUR do 100.0 5.2E-39 1.1E-43 313.9 21.6 196 99-332 2-217 (218)
309 TIGR02203 MsbA_lipidA lipid A 100.0 3.8E-39 8.2E-44 358.3 23.0 255 48-346 286-556 (571)
310 PRK13541 cytochrome c biogenes 100.0 3.9E-39 8.4E-44 309.4 19.8 183 97-326 1-192 (195)
311 cd03228 ABCC_MRP_Like The MRP 100.0 5.3E-39 1.2E-43 301.9 19.0 157 98-333 1-171 (171)
312 cd03233 ABC_PDR_domain1 The pl 100.0 1.3E-38 2.9E-43 307.3 21.7 176 97-335 3-199 (202)
313 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.2E-39 1.1E-43 319.0 19.3 178 110-333 7-193 (246)
314 cd03216 ABC_Carb_Monos_I This 100.0 1E-38 2.2E-43 297.6 20.0 158 98-335 1-161 (163)
315 PRK10789 putative multidrug tr 100.0 2.3E-38 5E-43 351.2 26.3 255 50-347 271-539 (569)
316 TIGR02204 MsbA_rel ABC transpo 100.0 1.9E-38 4E-43 353.1 25.6 257 48-346 290-563 (576)
317 TIGR01846 type_I_sec_HlyB type 100.0 1.7E-38 3.6E-43 360.2 25.6 256 48-347 410-681 (694)
318 TIGR01166 cbiO cobalt transpor 100.0 3.7E-39 8.1E-44 308.2 16.7 172 107-318 2-189 (190)
319 PRK13409 putative ATPase RIL; 100.0 8.6E-39 1.9E-43 353.0 22.0 188 95-331 338-529 (590)
320 PRK10982 galactose/methyl gala 100.0 4.2E-39 9.2E-44 351.2 19.2 206 95-335 248-470 (491)
321 PRK11288 araG L-arabinose tran 100.0 4.4E-39 9.5E-44 351.9 19.3 212 96-345 256-484 (501)
322 cd03291 ABCC_CFTR1 The CFTR su 100.0 6E-38 1.3E-42 316.8 25.6 208 93-345 35-246 (282)
323 PRK10522 multidrug transporter 100.0 3.8E-38 8.2E-43 348.1 25.8 240 49-344 279-537 (547)
324 PTZ00265 multidrug resistance 100.0 1.3E-38 2.9E-43 381.2 23.0 257 53-346 1120-1452(1466)
325 COG4619 ABC-type uncharacteriz 100.0 1.3E-39 2.9E-44 291.1 10.7 196 97-334 3-212 (223)
326 PRK10938 putative molybdenum t 100.0 1.3E-38 2.9E-43 347.4 20.6 208 95-337 258-484 (490)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.3E-38 7.1E-43 288.0 19.8 144 98-333 1-144 (144)
328 PRK10762 D-ribose transporter 100.0 1.4E-38 3.1E-43 347.9 20.6 208 96-342 256-480 (501)
329 COG4604 CeuD ABC-type enteroch 100.0 1.1E-39 2.5E-44 298.9 9.3 211 97-346 1-225 (252)
330 TIGR02857 CydD thiol reductant 100.0 5E-38 1.1E-42 346.1 24.2 239 49-329 277-529 (529)
331 PRK15439 autoinducer 2 ABC tra 100.0 1.5E-38 3.2E-43 348.1 19.7 206 95-342 266-488 (510)
332 COG1119 ModF ABC-type molybden 100.0 5.3E-39 1.1E-43 305.9 13.5 207 94-335 28-252 (257)
333 TIGR01257 rim_protein retinal- 100.0 6.4E-38 1.4E-42 375.8 25.8 208 95-343 1935-2156(2272)
334 TIGR02868 CydC thiol reductant 100.0 4.8E-38 1E-42 346.2 22.8 229 51-316 289-529 (529)
335 PLN03232 ABC transporter C fam 100.0 1.2E-37 2.5E-42 375.9 26.3 258 51-347 1188-1459(1495)
336 TIGR00954 3a01203 Peroxysomal 100.0 1.3E-37 2.8E-42 349.3 24.8 244 47-332 381-654 (659)
337 PLN03130 ABC transporter C fam 100.0 1.6E-37 3.5E-42 375.1 26.8 252 57-347 1197-1462(1622)
338 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.9E-37 4.2E-42 342.7 24.6 238 48-335 283-549 (555)
339 TIGR03771 anch_rpt_ABC anchore 100.0 1.9E-37 4.1E-42 303.9 20.3 191 118-346 1-201 (223)
340 COG4674 Uncharacterized ABC-ty 100.0 9.3E-38 2E-42 285.9 15.1 216 96-344 4-233 (249)
341 TIGR00957 MRP_assoc_pro multi 100.0 5.7E-37 1.2E-41 370.5 26.5 260 48-346 1235-1508(1522)
342 COG4148 ModC ABC-type molybdat 100.0 6.1E-38 1.3E-42 301.5 14.0 194 102-344 5-216 (352)
343 PLN03211 ABC transporter G-25; 100.0 1.9E-37 4E-42 346.4 19.6 211 99-346 70-296 (659)
344 COG4618 ArpD ABC-type protease 100.0 6.7E-37 1.5E-41 315.4 20.3 250 48-343 291-557 (580)
345 PRK15177 Vi polysaccharide exp 100.0 1.2E-36 2.5E-41 296.0 21.0 186 111-343 1-189 (213)
346 PTZ00243 ABC transporter; Prov 100.0 2.2E-36 4.8E-41 364.7 27.0 212 96-346 1307-1533(1560)
347 KOG0056 Heavy metal exporter H 100.0 7.9E-37 1.7E-41 311.5 18.3 246 57-347 500-762 (790)
348 cd03236 ABC_RNaseL_inhibitor_d 100.0 9.2E-37 2E-41 304.1 18.1 184 101-331 4-214 (255)
349 cd03222 ABC_RNaseL_inhibitor T 100.0 1.4E-36 3.1E-41 285.5 17.6 142 101-333 4-149 (177)
350 TIGR01187 potA spermidine/putr 100.0 1.6E-36 3.4E-41 313.2 18.9 177 128-345 1-189 (325)
351 PRK10535 macrolide transporter 100.0 6.3E-36 1.4E-40 335.3 25.3 205 96-342 3-228 (648)
352 COG4586 ABC-type uncharacteriz 100.0 1.4E-36 3E-41 291.7 14.9 196 111-347 38-247 (325)
353 TIGR01271 CFTR_protein cystic 100.0 1.2E-35 2.7E-40 357.9 26.8 211 96-346 1216-1440(1490)
354 COG4167 SapF ABC-type antimicr 100.0 1.1E-35 2.4E-40 269.3 15.8 213 96-345 3-238 (267)
355 COG1134 TagH ABC-type polysacc 100.0 1.3E-34 2.7E-39 276.4 22.7 195 110-348 40-238 (249)
356 COG0396 sufC Cysteine desulfur 100.0 2.6E-34 5.6E-39 270.7 22.7 209 96-341 2-229 (251)
357 KOG0927 Predicted transporter 100.0 1.2E-35 2.6E-40 307.9 13.8 211 93-348 385-598 (614)
358 COG4136 ABC-type uncharacteriz 100.0 2.6E-35 5.6E-40 258.9 12.6 191 97-329 2-207 (213)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.8E-34 4E-39 267.3 19.0 153 100-333 2-157 (157)
360 COG4778 PhnL ABC-type phosphon 100.0 3.9E-35 8.4E-40 262.9 13.5 197 96-331 3-227 (235)
361 COG4107 PhnK ABC-type phosphon 100.0 2E-34 4.4E-39 259.1 17.3 203 95-335 4-231 (258)
362 cd03238 ABC_UvrA The excision 100.0 1.6E-34 3.5E-39 271.3 17.5 149 110-334 8-166 (176)
363 COG5265 ATM1 ABC-type transpor 100.0 1.8E-34 3.8E-39 291.5 17.6 247 56-346 223-486 (497)
364 PRK00635 excinuclease ABC subu 100.0 1.4E-33 3.1E-38 333.5 25.1 195 234-484 785-991 (1809)
365 COG1101 PhnK ABC-type uncharac 100.0 2.3E-34 5E-39 267.6 14.4 209 97-339 1-233 (263)
366 TIGR00955 3a01204 The Eye Pigm 100.0 3.2E-34 7E-39 320.1 18.3 199 109-345 37-255 (617)
367 TIGR00956 3a01205 Pleiotropic 100.0 7.9E-34 1.7E-38 339.8 21.7 207 96-340 758-987 (1394)
368 PLN03140 ABC transporter G fam 100.0 6.6E-33 1.4E-37 331.0 22.5 208 96-341 866-1105(1470)
369 COG4133 CcmA ABC-type transpor 100.0 3.5E-33 7.6E-38 255.2 14.3 181 97-320 2-194 (209)
370 KOG0054 Multidrug resistance-a 100.0 5.7E-32 1.2E-36 312.5 20.9 247 57-342 1098-1359(1381)
371 cd03270 ABC_UvrA_I The excisio 100.0 1.3E-31 2.9E-36 262.8 19.8 95 240-335 118-223 (226)
372 KOG0066 eIF2-interacting prote 100.0 1.7E-31 3.7E-36 269.4 13.9 207 93-346 582-791 (807)
373 KOG0062 ATPase component of AB 100.0 5.3E-31 1.1E-35 272.0 17.6 210 93-346 358-569 (582)
374 KOG0059 Lipid exporter ABCA1 a 100.0 1.7E-30 3.7E-35 299.4 19.0 206 96-342 563-783 (885)
375 PRK00349 uvrA excinuclease ABC 100.0 1E-29 2.2E-34 290.0 23.7 180 235-471 466-656 (943)
376 KOG0061 Transporter, ABC super 100.0 1E-29 2.2E-34 281.6 19.9 209 97-343 25-257 (613)
377 TIGR00630 uvra excinuclease AB 100.0 4.9E-29 1.1E-33 284.0 22.1 171 242-468 470-651 (924)
378 PF00005 ABC_tran: ABC transpo 100.0 6.7E-30 1.4E-34 230.9 11.6 124 113-288 1-137 (137)
379 cd03278 ABC_SMC_barmotin Barmo 100.0 1.4E-29 3E-34 243.1 13.8 155 114-331 14-190 (197)
380 PRK00635 excinuclease ABC subu 100.0 1E-28 2.2E-33 292.5 22.4 169 243-468 460-639 (1809)
381 COG1126 GlnQ ABC-type polar am 100.0 2.3E-29 5.1E-34 235.3 10.6 128 424-554 2-147 (240)
382 cd03271 ABC_UvrA_II The excisi 100.0 7.1E-28 1.5E-32 239.6 17.3 218 111-339 9-259 (261)
383 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-28 2.9E-33 236.7 11.7 129 423-554 2-141 (248)
384 cd03272 ABC_SMC3_euk Eukaryoti 100.0 7.1E-28 1.5E-32 239.1 15.3 182 98-330 4-234 (243)
385 COG4178 ABC-type uncharacteriz 100.0 3.4E-27 7.3E-32 253.6 20.6 191 95-331 390-588 (604)
386 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.2E-27 2.7E-32 232.7 15.1 182 97-333 5-210 (213)
387 COG1129 MglA ABC-type sugar tr 99.9 2.4E-27 5.3E-32 250.1 18.2 205 94-336 260-481 (500)
388 COG1245 Predicted ATPase, RNas 99.9 1.8E-27 3.8E-32 242.5 16.0 186 96-330 341-530 (591)
389 COG1124 DppF ABC-type dipeptid 99.9 1.6E-27 3.4E-32 227.3 12.2 132 423-554 2-152 (252)
390 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.2E-27 4.9E-32 236.8 13.1 188 98-330 6-242 (251)
391 COG4615 PvdE ABC-type sideroph 99.9 2.5E-26 5.4E-31 230.3 20.0 233 58-339 288-531 (546)
392 COG3842 PotA ABC-type spermidi 99.9 2.2E-27 4.8E-32 242.3 11.4 130 422-554 3-147 (352)
393 COG3839 MalK ABC-type sugar tr 99.9 5.7E-27 1.2E-31 238.0 13.1 128 424-554 3-144 (338)
394 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 8.7E-27 1.9E-31 227.1 13.3 131 423-554 3-150 (254)
395 cd03240 ABC_Rad50 The catalyti 99.9 1.7E-26 3.7E-31 222.9 14.1 168 98-332 4-198 (204)
396 KOG0063 RNAse L inhibitor, ABC 99.9 2.9E-25 6.2E-30 224.5 21.9 354 121-554 98-467 (592)
397 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.9E-27 4.1E-32 230.8 5.6 190 98-330 6-203 (212)
398 COG4138 BtuD ABC-type cobalami 99.9 3E-27 6.6E-32 213.1 5.5 196 97-343 3-218 (248)
399 COG1120 FepC ABC-type cobalami 99.9 1.8E-26 4E-31 226.0 10.7 128 424-554 2-149 (258)
400 COG1125 OpuBA ABC-type proline 99.9 2.3E-26 5E-31 219.4 10.1 127 425-553 2-145 (309)
401 KOG0065 Pleiotropic drug resis 99.9 6.8E-25 1.5E-29 248.6 23.7 204 111-346 129-351 (1391)
402 COG1136 SalX ABC-type antimicr 99.9 9.1E-26 2E-30 216.9 12.5 128 425-554 2-153 (226)
403 COG1127 Ttg2A ABC-type transpo 99.9 1E-25 2.3E-30 213.9 11.3 131 422-554 6-156 (263)
404 COG4170 SapD ABC-type antimicr 99.9 1.9E-25 4E-30 207.0 11.4 206 96-334 2-237 (330)
405 COG2884 FtsE Predicted ATPase 99.9 1E-25 2.2E-30 206.4 8.2 128 424-554 1-148 (223)
406 COG3638 ABC-type phosphate/pho 99.9 3.2E-25 6.9E-30 210.1 10.9 129 423-554 2-158 (258)
407 COG1122 CbiO ABC-type cobalt t 99.9 4.4E-25 9.5E-30 215.9 11.9 130 423-554 2-149 (235)
408 COG3845 ABC-type uncharacteriz 99.9 3.2E-24 7E-29 222.2 18.8 210 94-335 254-482 (501)
409 PRK00349 uvrA excinuclease ABC 99.9 7.4E-24 1.6E-28 242.2 21.3 107 238-346 809-927 (943)
410 COG1135 AbcC ABC-type metal io 99.9 4.7E-25 1E-29 216.5 9.9 128 424-554 1-152 (339)
411 cd03275 ABC_SMC1_euk Eukaryoti 99.9 8E-25 1.7E-29 217.8 11.6 77 254-331 150-233 (247)
412 COG1118 CysA ABC-type sulfate/ 99.9 3.9E-25 8.5E-30 216.5 8.5 127 425-554 3-148 (345)
413 KOG0060 Long-chain acyl-CoA tr 99.9 1.2E-23 2.6E-28 220.4 19.5 208 94-332 430-642 (659)
414 PRK11247 ssuB aliphatic sulfon 99.9 2.5E-24 5.5E-29 215.1 13.7 131 421-554 9-144 (257)
415 TIGR03265 PhnT2 putative 2-ami 99.9 3.5E-24 7.6E-29 223.2 13.8 128 424-554 4-145 (353)
416 PRK11432 fbpC ferric transport 99.9 3.1E-24 6.7E-29 223.2 13.2 130 422-554 4-147 (351)
417 PRK11650 ugpC glycerol-3-phosp 99.9 2.9E-24 6.2E-29 224.0 12.7 128 424-554 3-145 (356)
418 TIGR00960 3a0501s02 Type II (G 99.9 3.8E-24 8.2E-29 208.6 11.9 127 425-554 2-149 (216)
419 cd03261 ABC_Org_Solvent_Resist 99.9 5.2E-24 1.1E-28 210.4 12.7 127 425-554 1-147 (235)
420 PRK09452 potA putrescine/sperm 99.9 7.4E-24 1.6E-28 221.9 14.3 131 421-554 11-155 (375)
421 cd03259 ABC_Carb_Solutes_like 99.9 3.4E-24 7.5E-29 208.5 10.8 127 425-554 1-141 (213)
422 cd03265 ABC_DrrA DrrA is the A 99.9 5.7E-24 1.2E-28 208.0 12.4 127 425-554 1-142 (220)
423 cd03226 ABC_cobalt_CbiO_domain 99.9 3.3E-24 7.1E-29 207.4 10.5 127 426-554 1-137 (205)
424 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.2E-23 4.8E-28 200.3 15.3 162 112-333 11-192 (198)
425 cd03268 ABC_BcrA_bacitracin_re 99.9 8.6E-24 1.9E-28 204.9 12.6 127 425-554 1-137 (208)
426 PRK15079 oligopeptide ABC tran 99.9 8E-24 1.7E-28 218.7 12.7 134 421-554 5-172 (331)
427 cd03293 ABC_NrtD_SsuB_transpor 99.9 8.2E-24 1.8E-28 206.9 12.1 127 425-554 1-142 (220)
428 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 9.7E-24 2.1E-28 206.0 12.3 127 425-554 1-151 (218)
429 PRK11248 tauB taurine transpor 99.9 1.3E-23 2.9E-28 210.0 13.4 127 425-554 2-139 (255)
430 TIGR00630 uvra excinuclease AB 99.9 8.4E-23 1.8E-27 233.2 21.5 104 238-343 807-922 (924)
431 cd03235 ABC_Metallic_Cations A 99.9 6.1E-24 1.3E-28 206.8 10.5 128 426-554 1-143 (213)
432 cd03269 ABC_putative_ATPase Th 99.9 9E-24 1.9E-28 205.1 11.5 127 425-554 1-139 (210)
433 PRK11629 lolD lipoprotein tran 99.9 1.5E-23 3.2E-28 206.9 13.1 129 423-554 4-156 (233)
434 PRK11607 potG putrescine trans 99.9 1.9E-23 4.1E-28 219.2 14.3 131 421-554 16-160 (377)
435 cd03301 ABC_MalK_N The N-termi 99.9 1.2E-23 2.5E-28 204.7 11.8 127 425-554 1-141 (213)
436 TIGR02673 FtsE cell division A 99.9 1.2E-23 2.6E-28 204.8 11.7 127 425-554 2-148 (214)
437 PRK13538 cytochrome c biogenes 99.9 1.7E-23 3.7E-28 202.3 12.7 127 425-554 2-140 (204)
438 TIGR02314 ABC_MetN D-methionin 99.9 1.6E-23 3.5E-28 216.9 13.3 127 425-554 2-151 (343)
439 cd03231 ABC_CcmA_heme_exporter 99.9 1.9E-23 4E-28 201.6 12.8 127 425-554 1-136 (201)
440 cd03266 ABC_NatA_sodium_export 99.9 1.7E-23 3.6E-28 204.4 12.5 127 425-554 2-147 (218)
441 PRK11831 putative ABC transpor 99.9 2.1E-23 4.6E-28 210.3 13.6 130 422-554 5-154 (269)
442 PRK11308 dppF dipeptide transp 99.9 2.2E-23 4.8E-28 215.2 13.9 133 422-554 3-165 (327)
443 PRK11000 maltose/maltodextrin 99.9 1.5E-23 3.3E-28 220.0 12.8 128 424-554 3-144 (369)
444 PRK13543 cytochrome c biogenes 99.9 3.1E-23 6.7E-28 202.0 13.9 132 420-554 7-148 (214)
445 TIGR01288 nodI ATP-binding ABC 99.9 2.6E-23 5.6E-28 213.1 13.8 130 422-554 2-146 (303)
446 COG0410 LivF ABC-type branched 99.9 1.4E-23 2.9E-28 199.1 10.7 130 423-554 2-147 (237)
447 cd03296 ABC_CysA_sulfate_impor 99.9 1.9E-23 4E-28 207.0 12.2 128 424-554 2-147 (239)
448 PRK10851 sulfate/thiosulfate t 99.9 1.8E-23 3.9E-28 217.9 12.6 128 424-554 2-147 (353)
449 TIGR02211 LolD_lipo_ex lipopro 99.9 2.1E-23 4.5E-28 204.1 12.1 128 424-554 1-152 (221)
450 cd03219 ABC_Mj1267_LivG_branch 99.9 1.8E-23 3.9E-28 206.6 11.8 127 425-554 1-154 (236)
451 cd03257 ABC_NikE_OppD_transpor 99.9 2.8E-23 6.2E-28 204.0 13.0 131 424-554 1-156 (228)
452 PRK13537 nodulation ABC transp 99.9 3.5E-23 7.5E-28 212.2 14.1 130 422-554 5-149 (306)
453 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 3.1E-23 6.6E-28 205.1 13.2 128 424-554 1-143 (236)
454 TIGR02315 ABC_phnC phosphonate 99.9 1.9E-23 4.1E-28 207.4 11.8 127 425-554 2-156 (243)
455 KOG2355 Predicted ABC-type tra 99.9 6.3E-23 1.4E-27 189.7 14.2 191 96-335 12-227 (291)
456 PRK10584 putative ABC transpor 99.9 3.4E-23 7.3E-28 203.7 13.3 130 422-554 4-157 (228)
457 TIGR03258 PhnT 2-aminoethylpho 99.9 2.9E-23 6.4E-28 216.6 13.5 127 425-554 6-148 (362)
458 cd03256 ABC_PhnC_transporter A 99.9 2.3E-23 5E-28 206.5 12.0 127 425-554 1-155 (241)
459 TIGR01189 ccmA heme ABC export 99.9 3E-23 6.5E-28 199.6 12.4 127 425-554 1-138 (198)
460 PRK13631 cbiO cobalt transport 99.9 4.4E-23 9.5E-28 212.4 14.2 135 419-554 16-187 (320)
461 PRK13651 cobalt transporter AT 99.9 3.5E-23 7.5E-28 211.9 13.3 130 424-554 2-176 (305)
462 cd03262 ABC_HisP_GlnQ_permease 99.9 2.2E-23 4.8E-28 202.7 11.3 127 425-554 1-146 (213)
463 PRK13634 cbiO cobalt transport 99.9 2.4E-23 5.1E-28 212.0 11.9 129 425-554 3-156 (290)
464 PRK10575 iron-hydroxamate tran 99.9 3.5E-23 7.5E-28 208.2 13.0 132 420-554 7-158 (265)
465 cd03263 ABC_subfamily_A The AB 99.9 2.4E-23 5.2E-28 203.5 11.4 127 425-554 1-144 (220)
466 PRK10247 putative ABC transpor 99.9 4.2E-23 9E-28 202.7 13.1 130 422-554 5-148 (225)
467 PRK10908 cell division protein 99.9 3.5E-23 7.5E-28 202.8 12.2 127 425-554 2-148 (222)
468 KOG0065 Pleiotropic drug resis 99.9 1E-23 2.2E-28 239.0 9.4 209 97-342 787-1017(1391)
469 PRK11701 phnK phosphonate C-P 99.9 5.8E-23 1.2E-27 205.9 13.8 132 423-554 5-162 (258)
470 COG0411 LivG ABC-type branched 99.9 7.6E-24 1.6E-28 202.3 6.9 129 422-553 2-159 (250)
471 PRK13540 cytochrome c biogenes 99.9 6.2E-23 1.3E-27 197.8 13.4 127 425-554 2-138 (200)
472 cd03258 ABC_MetN_methionine_tr 99.9 4.5E-23 9.8E-28 203.4 12.7 127 425-554 2-151 (233)
473 PRK13548 hmuV hemin importer A 99.9 6E-23 1.3E-27 205.7 13.6 128 424-554 2-145 (258)
474 PRK13637 cbiO cobalt transport 99.9 5E-23 1.1E-27 209.3 13.2 130 424-554 2-155 (287)
475 COG4619 ABC-type uncharacteriz 99.9 2.6E-24 5.7E-29 193.1 3.2 127 425-554 4-144 (223)
476 cd03218 ABC_YhbG The ABC trans 99.9 4.5E-23 9.7E-28 203.3 12.2 127 425-554 1-144 (232)
477 PRK13536 nodulation factor exp 99.9 7.1E-23 1.5E-27 212.3 14.2 132 420-554 37-183 (340)
478 PRK13643 cbiO cobalt transport 99.9 5.8E-23 1.2E-27 209.0 13.3 129 425-554 2-155 (288)
479 cd03292 ABC_FtsE_transporter F 99.9 4.3E-23 9.3E-28 200.8 11.8 127 425-554 1-147 (214)
480 cd03225 ABC_cobalt_CbiO_domain 99.9 3.9E-23 8.4E-28 200.8 11.4 127 426-554 1-145 (211)
481 PRK11124 artP arginine transpo 99.9 4.4E-23 9.6E-28 204.7 12.1 128 424-554 2-152 (242)
482 COG4181 Predicted ABC-type tra 99.9 1.8E-23 4E-28 188.3 8.3 128 424-554 6-157 (228)
483 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.9E-23 8.4E-28 205.1 11.6 128 425-554 1-146 (242)
484 PRK13646 cbiO cobalt transport 99.9 3.6E-23 7.8E-28 210.3 11.6 130 424-554 2-156 (286)
485 PRK11153 metN DL-methionine tr 99.9 6.1E-23 1.3E-27 213.6 13.5 127 425-554 2-151 (343)
486 PRK13539 cytochrome c biogenes 99.9 8.1E-23 1.8E-27 198.0 13.3 128 424-554 2-138 (207)
487 COG1131 CcmA ABC-type multidru 99.9 4.5E-23 9.8E-28 209.6 12.0 128 424-554 4-147 (293)
488 PRK09493 glnQ glutamine ABC tr 99.9 5.2E-23 1.1E-27 203.9 12.1 127 425-554 2-147 (240)
489 PRK09536 btuD corrinoid ABC tr 99.9 5.1E-23 1.1E-27 216.9 12.7 129 423-554 2-150 (402)
490 PRK13641 cbiO cobalt transport 99.9 7.6E-23 1.6E-27 208.1 13.4 130 424-554 2-156 (287)
491 PRK14250 phosphate ABC transpo 99.9 6.5E-23 1.4E-27 203.4 12.6 128 424-554 3-142 (241)
492 PRK15112 antimicrobial peptide 99.9 6.9E-23 1.5E-27 206.3 12.8 133 422-554 2-160 (267)
493 PRK11300 livG leucine/isoleuci 99.9 6.9E-23 1.5E-27 204.9 12.7 130 422-554 3-164 (255)
494 TIGR02323 CP_lyasePhnK phospho 99.9 8E-23 1.7E-27 204.2 13.2 132 423-554 2-159 (253)
495 cd03224 ABC_TM1139_LivF_branch 99.9 4.9E-23 1.1E-27 201.6 11.0 127 425-554 1-143 (222)
496 TIGR03411 urea_trans_UrtD urea 99.9 7.4E-23 1.6E-27 203.0 12.5 128 424-554 2-154 (242)
497 PRK13647 cbiO cobalt transport 99.9 8.3E-23 1.8E-27 206.4 13.0 129 424-554 4-149 (274)
498 TIGR03522 GldA_ABC_ATP gliding 99.9 9.2E-23 2E-27 208.8 13.4 128 424-554 2-144 (301)
499 cd03260 ABC_PstB_phosphate_tra 99.9 6.8E-23 1.5E-27 201.4 11.9 126 425-554 1-152 (227)
500 TIGR02769 nickel_nikE nickel i 99.9 7.9E-23 1.7E-27 205.7 12.6 131 424-554 2-161 (265)
No 1
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.6e-85 Score=702.11 Aligned_cols=445 Identities=41% Similarity=0.683 Sum_probs=385.9
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccC
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (554)
.+|+++|++++|+++++|+|+||+|.+|+++||||+||||||||||+|+|.+.|++|+|...+ +.+|+|++|++.....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-GLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-CceEEEeCCCCCcCCC
Confidence 468999999999999999999999999999999999999999999999999999999999874 4789999999999888
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCC
Q 008771 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (554)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (554)
.||.+.+..++..........+.+...+... .......+......++.|..+.++..+|..+|++.. ++
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~ 149 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADP---------DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DR 149 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cC
Confidence 8999999888776655555555444332211 112334444555566779999999999999999855 89
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
++.+||||||.||+||+||+.+||+|||||||||||.+++.||.++|+++..|+||||||++|++++|++|+.++.|++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999999999999999987679999999999999999999999999999
Q ss_pred eccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHHHHhhhhccccc-cccceee
Q 008771 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQEEEQIEKPFQ-RKQMKIR 413 (554)
Q Consensus 336 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 413 (554)
.|.|||+.|+++++.....+.+++++++++++++++++++...... +.+++++.+++++++......++.. .....+.
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~ 309 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceee
Confidence 9999999999999999988889999999999999999998765433 3467778888888875322233332 3334456
Q ss_pred ccCCC-CCCCceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEE
Q 008771 414 FPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (554)
Q Consensus 414 ~~~~~-~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~ 491 (554)
|+... ..++.+++++|+++.|++ +.+++++||.|.+||+|||+||||+|||||||+|+|...|.+|+|.++ ..++++
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~ig 388 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIG 388 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEE
Confidence 66655 478999999999999966 589999999999999999999999999999999999999999999996 569999
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
||+|+.. .++++.|+.|++....+...+.+++.+|++|+|+++.+.+++..||||||.||+|
T Consensus 389 yf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~L 450 (530)
T COG0488 389 YFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLL 450 (530)
T ss_pred EEEehhh-hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHH
Confidence 9999974 4558889999999988766688999999999999999999999999999999875
No 2
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-76 Score=655.80 Aligned_cols=440 Identities=30% Similarity=0.516 Sum_probs=346.4
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
+|+++||+++|+++++|+||||+|.+|+++||||+||||||||||+|+|+++|++|+|.+++. ..|+|++|++.. ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-WQLAWVNQETPA-LPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCCCC-CCC
Confidence 489999999999999999999999999999999999999999999999999999999999864 469999997533 235
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
++.+++.............+... .. .... ..+..+.......+.+..+.++..+|..+||.....+++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~----~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDA----NE-RNDG-------HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHH----hc-cCCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 77666643221111110000000 00 0000 001111111122344566788999999999975567899
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeee
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~ 336 (554)
+.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|+++++|||+||||++++..+||+|++|++|++..
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999989
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchhhHHHHHHHHHHHHhhhhccccccccceeecc
Q 008771 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG-ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (554)
Q Consensus 337 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 415 (554)
|.|+|+.|..++......+...+++++++++++++++.+.... ..+.+++++.++++++.. ...+.......+.++
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~---~~~~~~~~~~~~~~~ 303 (638)
T PRK10636 227 YTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMEL---IAPAHVDNPFHFSFR 303 (638)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhc---ccccccCCceeEecC
Confidence 9999999999888777778888899999999999998774321 122233444455554432 111111223455665
Q ss_pred CCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEec
Q 008771 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (554)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q 495 (554)
.....++++|+++|+++.|+++.+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.+++ .+.++|++|
T Consensus 304 ~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q 382 (638)
T PRK10636 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQ 382 (638)
T ss_pred CCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecC
Confidence 5455678899999999999888899999999999999999999999999999999999999999999964 467899999
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++...++++.|+.+++...........++.+|+.|+|..+.+++++..|||||||||+|
T Consensus 383 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~L 441 (638)
T PRK10636 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVL 441 (638)
T ss_pred cchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHH
Confidence 75445667789998875433333356789999999997767899999999999999975
No 3
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-74 Score=646.06 Aligned_cols=445 Identities=31% Similarity=0.530 Sum_probs=342.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
+|+++||+++|+++++|+||||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++ ...++|++|.+......
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~-~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC-CCEEEEeccCCCCCCCC
Confidence 68999999999988999999999999999999999999999999999999999999999986 45689999976543446
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
++.+++...+............+...+.. ....+ .+..+..+.......+.+..+.++.++++.+||. .+++
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~ 153 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVET-DPSEK----NLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAA 153 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CchHH----HHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCc
Confidence 78877643321111111111111110000 00000 0111111111112233455677899999999996 3789
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeee
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~ 336 (554)
+.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|++..
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeeccC
Q 008771 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE 416 (554)
Q Consensus 337 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 416 (554)
|.|+|++|..+++.....+..+++.++++++++.+++.+..... ..+..++.++++++.... ...+.......+.++.
T Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (635)
T PRK11147 234 YPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKAR-RTRNEGRVRALKALRRER-SERREVMGTAKMQVEE 311 (635)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHhhhhh-ccccccCCceeEEeCC
Confidence 99999999999888777777777788888888888777622111 111233334444433111 1111112234455655
Q ss_pred CCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecc
Q 008771 417 RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496 (554)
Q Consensus 417 ~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~ 496 (554)
....++++|+++|+++.|+++.+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.+ |.++.++|++|+
T Consensus 312 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~ 390 (635)
T PRK11147 312 ASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQH 390 (635)
T ss_pred CCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCc
Confidence 4456788999999999998888999999999999999999999999999999999999999999999 566789999997
Q ss_pred cccCCCCCCCHHHHHHhhcccC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ ..++++.||.+++....... ....++.+|+.|+|..+..++++..|||||||||+|
T Consensus 391 ~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~l 451 (635)
T PRK11147 391 R-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLL 451 (635)
T ss_pred c-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHH
Confidence 5 45788899999997643211 145688999999998777899999999999999975
No 4
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.5e-72 Score=619.05 Aligned_cols=448 Identities=32% Similarity=0.492 Sum_probs=335.4
Q ss_pred CccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
+++|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++ ...||||+|++.++
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQLD 82 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCC
Confidence 35799999999998 78899999999999999999999999999999999999999999999874 35799999999888
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+|+...+.................. ..+ ..+...+.....+......++.++.+.++.++++.+|++ ..
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~ 157 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYA--EPD-ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PW 157 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc--cCc-hhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--cc
Confidence 8899999986543211000000000000000 000 001111222333344444555566778899999999995 36
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
++++.+|||||||||+||+||+.+|++||||||||+||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|+
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 88999999999999999999999999999999999999999999999998887899999999999999999999999999
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceee
Q 008771 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (554)
Q Consensus 334 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (554)
+..|.|+|++|...+......+...+++.++.+.++.+++++..... ........++++++... ..+..+....+.
T Consensus 238 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 313 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKAR-QAKSKARLARYEELLSE---EYQKRNETNEIF 313 (556)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhcc---cccccCCCceee
Confidence 87799999999887765555555555555566655555544311100 00111111222222110 001011112222
Q ss_pred ccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEE
Q 008771 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493 (554)
Q Consensus 414 ~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~ 493 (554)
++.....++++|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++ ..+.++|+
T Consensus 314 ~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v 392 (556)
T PRK11819 314 IPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYV 392 (556)
T ss_pred cCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEE
Confidence 33322234678999999999988889999999999999999999999999999999999999999999995 45678999
Q ss_pred ecccccCCCCCCCHHHHHHhhcc----cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ ..++++.||.+++..... ......++.+|+.+++..+..++++..|||||||||+|
T Consensus 393 ~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 456 (556)
T PRK11819 393 DQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHL 456 (556)
T ss_pred eCch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHH
Confidence 9985 356778899999876431 11234567899999996556799999999999999875
No 5
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-72 Score=613.94 Aligned_cols=447 Identities=31% Similarity=0.536 Sum_probs=329.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+|+|+|+++|++|+|.+++. ..|+|++|++.+++..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-ERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccCCcCCCC
Confidence 489999999999889999999999999999999999999999999999999999999999864 4699999999888889
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
||.+++..+.............+.........+. ....+.......+..+..+.++.++++.+|++....+++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDG-------MKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchH-------HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 9999986432110000000000000000000000 001111111122333445677889999999975444678
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeee
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~ 336 (554)
+.+|||||||||+||+||+.+|+||||||||++||+.++.+|.++|++.+.|||+||||++++.++||+|++|++|++..
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 89999999999999999999999999999999999999999999998889999999999999999999999999999877
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhhHHHHHHHHHHHHhhhhccccccccceeecc
Q 008771 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (554)
Q Consensus 337 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 415 (554)
|.|+|++|..+++........++.++++++..+++++.+..... ....+....++++++.... ..+.........++
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 310 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEE--VKPSSRQNPFIRFE 310 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccc--cCCccccCceeeCC
Confidence 99999999887765554555556666666666555544322111 1111111222222211000 00000000111222
Q ss_pred CCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEec
Q 008771 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (554)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q 495 (554)
.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 311 ~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q 389 (530)
T PRK15064 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQ 389 (530)
T ss_pred CCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcc
Confidence 22223567899999999998878999999999999999999999999999999999999999999999864 46899999
Q ss_pred ccccCCCCCCCHHHHHHhhc-ccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++...++...||.+++.... .......++.+|..+++..+..++++..|||||||||+|
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 449 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLF 449 (530)
T ss_pred cccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHH
Confidence 86434666789999986432 122345688999999996567899999999999999975
No 6
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=2.8e-73 Score=586.72 Aligned_cols=445 Identities=40% Similarity=0.647 Sum_probs=387.8
Q ss_pred CCCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccc
Q 008771 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
++...+.++|++++|.++.+++|+.|++.+|++|||+|+|||||||+|++|+|-..|..-++ .+..+.++...
T Consensus 71 ~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-------d~y~ls~e~~p 143 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-------DFYLLSREIEP 143 (614)
T ss_pred cccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-------chhhhcccCCC
Confidence 45567999999999999999999999999999999999999999999999999999854332 34445555443
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
....+|...++....+..++....+.+....+. ...+.++.++.+...++.+..+.++..+|..+|+...+
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---------~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---------KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---------hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 333345445545555555544444444433221 12344556667777888899999999999999999999
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCC-eEEEEecCHHHHHhhcceEEEeeC
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV-PMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~-tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
.++.+.+||||||+|++|||+|..+|++|||||||||||++++.||.++|.++.. ++|++||+.+|+..+|++|+.+++
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 9999999999999999999999999999999999999999999999999999887 899999999999999999999999
Q ss_pred CeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCchhhHHHHHHHHHHHHhhhhcccccccc
Q 008771 332 GVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG--ANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409 (554)
Q Consensus 332 g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 409 (554)
++...|.|||++|+..+.+....|..+|+++++++...++.+.+.+.+ ...+++++..+.+++++.....+++...+.
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~ 374 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKV 374 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCce
Confidence 999999999999999999999999999999999999999999998876 345677888888899988888889999999
Q ss_pred ceeeccCCCCCCCceEEEeeeeEecCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 410 MKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~~l~~~y~~~-~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
..++|+..+..+.+++.+.|++|.|++. .+|++++|-|..+++||+|||||||||||||+++|.+.|..|.|..+.+ .
T Consensus 375 l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-~ 453 (614)
T KOG0927|consen 375 LSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-N 453 (614)
T ss_pred EEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-c
Confidence 9999998887789999999999999865 6999999999999999999999999999999999999999999988654 3
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhccc-CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+.++|.|+..+.++.+.|+.+++....++ +..++++.+|++|||+++....++++||+|||.||+|
T Consensus 454 ~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 454 KLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLF 520 (614)
T ss_pred cchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHH
Confidence 46699999999999999999999988875 7788999999999999999999999999999999974
No 7
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.7e-71 Score=610.78 Aligned_cols=447 Identities=32% Similarity=0.501 Sum_probs=332.2
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
.+|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ...|||++|++.+++
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCCCC
Confidence 4699999999998 77899999999999999999999999999999999999999999999875 357999999998888
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+|+..++................... .+.+ ..........+....+.++.+..+.++.++++.+|++ ..+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~ 156 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAE--PDAD-MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWD 156 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc--Cchh-hHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--ccc
Confidence 8999999865432110000000000000000 0000 0000111222333344556666778899999999995 258
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
+++.+|||||||||+|||||+.+|++||||||||+||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|++
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 88999999999999999999999999999999999999999999999988888999999999999999999999999998
Q ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeec
Q 008771 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (554)
Q Consensus 335 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 414 (554)
..|.|+|++|...+....+.+...+++.++++.++..++.+..... ........++.+++... ..+......++.+
T Consensus 237 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 312 (552)
T TIGR03719 237 IPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-QAKSKARLARYEELLSQ---EFQKRNETAEIYI 312 (552)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhhh---cccccCCCceeec
Confidence 7899999999987765555555556566666655554443211100 00111111222221110 0011111112223
Q ss_pred cCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEe
Q 008771 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE 494 (554)
Q Consensus 415 ~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~ 494 (554)
+.....++++++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ .++.++|++
T Consensus 313 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~ 391 (552)
T TIGR03719 313 PPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVD 391 (552)
T ss_pred CCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEe
Confidence 3222235678999999999988789999999999999999999999999999999999999999999995 456789999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--c--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ ..+++..||.+++..... . .....++.+|..+++.....++++..|||||||||+|
T Consensus 392 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~l 454 (552)
T TIGR03719 392 QSR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHL 454 (552)
T ss_pred CCc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHH
Confidence 985 246678899999976532 1 1133467899999996555789999999999999975
No 8
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.9e-69 Score=601.46 Aligned_cols=444 Identities=29% Similarity=0.481 Sum_probs=328.3
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC---CCCceeEEEcCCCceEEEEeccc
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~---~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
...+|+++|++|+|+++++|+|+||+|.+|+++||||+||||||||||+|+|.. .|++ ..|+|++|+.
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~---------g~I~~~~Q~~ 244 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKN---------CQILHVEQEV 244 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCC---------CEEEEEeccC
Confidence 456799999999999888999999999999999999999999999999999974 2333 3577888875
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHH-HHHHHHH--H--hh----------ccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGK-LERVQKA--L--ES----------AVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~-~~~~~~~--~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
.. ...|+.+.+............. ...+.+. + .. ...+. .........+...+...+.|..
T Consensus 245 ~g-~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 245 VG-DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDK---DAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred CC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccch---HHHHHHHHHHHHHHHhcCcchH
Confidence 42 4557766554322111111000 0000000 0 00 00000 0112233344455556677889
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecC
Q 008771 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd 315 (554)
+.++.++|..+||.....++++.+|||||||||+||+||+.+|++|||||||+|||+.++.||.++|++++.|||+||||
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd 400 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHA 400 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECC
Confidence 99999999999997666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhhHHHHHHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLER 394 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 394 (554)
++++..+||+|++|++|++..|.|+|+.|...+......+..+|+.++++++++++++.++.... .+..+.+..+.+++
T Consensus 401 ~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~ 480 (718)
T PLN03073 401 REFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDR 480 (718)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHH
Confidence 99999999999999999998899999999998887777888888888888888887776643211 11112222233333
Q ss_pred HHHhhhhccccccccceeeccCCC-CCCCceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 395 LQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 395 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
+... ..+.......+.++... ..++++|+++|+++.|++ +.+|+++||+|.+||+++|+|||||||||||++|+|
T Consensus 481 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G 557 (718)
T PLN03073 481 LGHV---DAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG 557 (718)
T ss_pred Hhhh---hccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3211 11111111223343321 235678999999999964 568999999999999999999999999999999999
Q ss_pred CCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcc
Q 008771 473 LEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552 (554)
Q Consensus 473 ~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl 552 (554)
+++|++|+|.+++ ...++|++|++...+....++...+...........++.+|+.|++..+..++++..|||||||||
T Consensus 558 ll~p~~G~I~~~~-~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv 636 (718)
T PLN03073 558 ELQPSSGTVFRSA-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 636 (718)
T ss_pred CCCCCCceEEECC-ceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence 9999999999875 457899999863333222222222221122334567899999999976677899999999999999
Q ss_pred cC
Q 008771 553 LY 554 (554)
Q Consensus 553 ~l 554 (554)
+|
T Consensus 637 aL 638 (718)
T PLN03073 637 AF 638 (718)
T ss_pred HH
Confidence 75
No 9
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.2e-68 Score=561.48 Aligned_cols=378 Identities=23% Similarity=0.376 Sum_probs=297.4
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC----ceeEEEcCCC-------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNVIKAKSN------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~----~G~I~~~~~~------- 160 (554)
++|+++||++.|.. ..+++||||+|.+||++||||+|||||||++++|.|++++. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 37999999999953 26999999999999999999999999999999999999987 8999999853
Q ss_pred -------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 161 -------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
..|+|+||++. +.+.+||.+.+...+. ......
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~--------------------------------------~h~~~~ 125 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR--------------------------------------LHGKGS 125 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHH--------------------------------------Hhcccc
Confidence 26999999984 4455677766543221 001112
Q ss_pred cccHHHHHHHHhhhcCCCcccc-CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCC
Q 008771 232 LDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~-~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g 306 (554)
.++...++.++|+.+||++... +++|++|||||||||.||+||+.+|++||+||||++||+.+...+.+.|+ +.|
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 4456788999999999986554 47999999999999999999999999999999999999999988888764 579
Q ss_pred CeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhH
Q 008771 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (554)
Q Consensus 307 ~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (554)
+++|+||||+..+.++||||++|++|+++. .|..++.+.... ..| ++.++..
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE-~G~~~~i~~~p~-------hpY---------T~~Ll~a----------- 257 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIVE-TGPTEEILSNPQ-------HPY---------TRGLLAA----------- 257 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEEE-ecCHHHHHhccC-------Ccc---------cHHHHhh-----------
Confidence 999999999999999999999999999854 455544433210 001 0000000
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-----------ccceeceEEEEecCCEEEE
Q 008771 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEKTAI 455 (554)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~vs~~i~~Ge~iaI 455 (554)
.. ........... ......++++++++|+++.|.. ..++++|||+|++||++||
T Consensus 258 --------~p------~~~~~~~~~~~-~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lgl 322 (539)
T COG1123 258 --------VP------RLGDEKIIRLP-RRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGL 322 (539)
T ss_pred --------CC------Ccccccccccc-cccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEE
Confidence 00 00000000000 0001126889999999999972 2479999999999999999
Q ss_pred ECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eEEEEecccccCCCCCCCHHHHHHhhcc---c---
Q 008771 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNYFEQNQAEALDLDKTVLETVAEAAE---D--- 517 (554)
Q Consensus 456 vG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~--- 517 (554)
||++|||||||.|+|+|+.+|++|+|.++|.++ .+.+++|+|...|+|..||.+++.+... .
T Consensus 323 VGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~ 402 (539)
T COG1123 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccch
Confidence 999999999999999999999999999988652 3458899999999999999999987642 1
Q ss_pred -CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 518 -WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 518 -~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.....+.++|...+++++.++++|++||||||||++|
T Consensus 403 ~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaI 440 (539)
T COG1123 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAI 440 (539)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHH
Confidence 1123578889999999888999999999999999975
No 10
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-66 Score=581.73 Aligned_cols=397 Identities=18% Similarity=0.310 Sum_probs=295.7
Q ss_pred CccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC-----------
Q 008771 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------- 159 (554)
Q Consensus 95 ~~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~----------- 159 (554)
+++|+++|++++|+ +.++|+||||+|.+||++||||+||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 45799999999996 247999999999999999999999999999999999999999999988652
Q ss_pred -------------CceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 008771 160 -------------NMKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224 (554)
Q Consensus 160 -------------~~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (554)
...||||+|++ .+++.+||.+|+...... .
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~---------------~-------------------- 134 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL---------------H-------------------- 134 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHH---------------h--------------------
Confidence 12599999998 566778999998643110 0
Q ss_pred HHHHhCCcccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH
Q 008771 225 RKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l 302 (554)
..+..++...++.++|+.+||+. ...++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.+++
T Consensus 135 ---~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll 211 (623)
T PRK10261 135 ---QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211 (623)
T ss_pred ---cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence 00112234567888999999963 3568999999999999999999999999999999999999999988888776
Q ss_pred c----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008771 303 G----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (554)
Q Consensus 303 ~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (554)
+ +.|+|||+||||++++.++||||++|++|+++ ..|++.++...... .|. +.+......
T Consensus 212 ~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~~-------~~~---------~~l~~~~~~ 274 (623)
T PRK10261 212 KVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQH-------PYT---------RALLAAVPQ 274 (623)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCCC-------hhh---------hhhhhccCc
Confidence 4 24899999999999999999999999999985 57887776432100 000 000000000
Q ss_pred -CCCchhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-----------ccceeceEEE
Q 008771 379 -GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLT 446 (554)
Q Consensus 379 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~vs~~ 446 (554)
....++.. ....+... ...+..... ..++.....++++|+++|+++.|+. ..+|+++||+
T Consensus 275 ~~~~~~~~~--~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~ 346 (623)
T PRK10261 275 LGAMKGLDY--PRRFPLIS----LEHPAKQEP--PIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFD 346 (623)
T ss_pred ccccccccC--Cccccccc----cccccccCc--ccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeE
Confidence 00000000 00000000 000000000 0000111124678999999999961 3589999999
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eEEEEecccccCCCCCCCHHHHHHh
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAE 513 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (554)
|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|++...+++..||.+++..
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~ 426 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIME 426 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999988643 3689999975568888999999876
Q ss_pred hcc--cC-----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 514 AAE--DW-----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 514 ~~~--~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
... .. ....+.++|+.+++..+..++++..|||||||||+|
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~i 474 (623)
T PRK10261 427 PLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICI 474 (623)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHH
Confidence 421 11 124578899999997567899999999999999975
No 11
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-66 Score=570.70 Aligned_cols=376 Identities=21% Similarity=0.353 Sum_probs=291.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++|+++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 46999999999998899999999999999999999999999999999999999999999998742 2499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+......... . .+ ...........++.++++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-----------~---------~~------------~~~~~~~~~~~~~~~~l~ 131 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKK-----------V---------CG------------VNIIDWREMRVRAAMMLL 131 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccc-----------c---------cc------------ccccCHHHHHHHHHHHHH
Confidence 999999888889999998532100000 0 00 000011123456788899
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++..
T Consensus 132 ~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 132 RVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 45789999999999999999999999999999999999999999999988774 358999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhh
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (554)
+||+|++|++|++ .+.|+++++.... ..+.+.. .... ...
T Consensus 211 ~~d~v~~l~~G~i-~~~g~~~~~~~~~-----------------------~~~~~~~-~~~~---------------~~~ 250 (510)
T PRK09700 211 ICDRYTVMKDGSS-VCSGMVSDVSNDD-----------------------IVRLMVG-RELQ---------------NRF 250 (510)
T ss_pred hCCEEEEEECCEE-eeecchhhCCHHH-----------------------HHHHhcC-CCcc---------------ccc
Confidence 9999999999997 5778776653210 0000000 0000 000
Q ss_pred ccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
.... . +.....++++|+++|+++.|. .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|
T Consensus 251 ~~~~-~-------~~~~~~~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 320 (510)
T PRK09700 251 NAMK-E-------NVSNLAHETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 (510)
T ss_pred cccc-c-------ccccCCCCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 0000 0 000112356899999998774 38999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhcc----------c-C----CHHHHHHHHhhCCCCh
Q 008771 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----------D-W----RIDDIKGLLGRCNFKA 534 (554)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----------~-~----~~~~~~~~L~~~~l~~ 534 (554)
.++|.++ .++|++|++. ..+++..||.+++..... . . ....+.++|+.+++..
T Consensus 321 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 400 (510)
T PRK09700 321 RLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400 (510)
T ss_pred EECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC
Confidence 9988543 2689999742 357788999999864311 0 0 1134678999999964
Q ss_pred hhhccccCcCChhhhhcccC
Q 008771 535 DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 535 ~~~~~~~~~LSGGek~Rl~l 554 (554)
+..++++..|||||||||+|
T Consensus 401 ~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 401 HSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred CCccCccccCChHHHHHHHH
Confidence 56899999999999999975
No 12
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-66 Score=568.64 Aligned_cols=370 Identities=21% Similarity=0.302 Sum_probs=288.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC--CceeEEEcCCC-----------ce
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MK 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~~~~-----------~~ 162 (554)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 469999999999988999999999999999999999999999999999999996 89999998742 24
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|++|++.+++..||.+|+....... .. ..........++.++
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~---------------------~~~~~~~~~~~~~~~ 127 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEIT---------------PG---------------------GIMDYDAMYLRAQKL 127 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhccccc---------------cc---------------------CCcCHHHHHHHHHHH
Confidence 999999998888899999985321000 00 000111234567788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++
T Consensus 128 l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 128 LAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 9999996 467899999999999999999999999999999999999999999999887743 588999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhh
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (554)
..+||+|++|++|++. +.|+..++.... ....+.. ..
T Consensus 207 ~~~~d~v~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~~-~~------------------ 243 (506)
T PRK13549 207 KAISDTICVIRDGRHI-GTRPAAGMTEDD-----------------------IITMMVG-RE------------------ 243 (506)
T ss_pred HHhcCEEEEEECCEEe-eecccccCCHHH-----------------------HHHHhhC-cC------------------
Confidence 9999999999999874 555544321100 0000000 00
Q ss_pred hhccccccccceeeccCCCCCCCceEEEeeeeEecC---CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-
Q 008771 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK- 475 (554)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~---~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~- 475 (554)
.....+. +. ...++++|+++|+++.|+ +..+++++||+|++||+++|+|+||||||||+++|+|+++
T Consensus 244 -~~~~~~~-------~~-~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 244 -LTALYPR-------EP-HTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred -ccccccc-------cc-cCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000000 00 112456899999999994 3568999999999999999999999999999999999999
Q ss_pred CCceEEEECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhcc----c---C----CHHHHHHHHhhCCC
Q 008771 476 PRGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----D---W----RIDDIKGLLGRCNF 532 (554)
Q Consensus 476 p~~G~i~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----~---~----~~~~~~~~L~~~~l 532 (554)
|++|+|.++|.++ .++|++|++. ..+++..||.+++..... . . ....+..+|+++++
T Consensus 315 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 5999999987543 2689999863 246678899999864310 0 0 12357889999999
Q ss_pred ChhhhccccCcCChhhhhcccC
Q 008771 533 KADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 533 ~~~~~~~~~~~LSGGek~Rl~l 554 (554)
..+..++++..|||||||||+|
T Consensus 395 ~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 395 KTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred cCCCcccccccCCHHHHHHHHH
Confidence 6456799999999999999975
No 13
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.5e-66 Score=564.48 Aligned_cols=369 Identities=26% Similarity=0.361 Sum_probs=289.0
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ce
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MK 162 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~ 162 (554)
+.++|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3457999999999998889999999999999999999999999999999999999999999998742 24
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|++|++.+++..||.+|+..... .....++++.++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~~~~~~ 124 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLP-------------------------------------------KRQASMQKMKQL 124 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccc-------------------------------------------cchHHHHHHHHH
Confidence 9999999988888999999753210 001123456778
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 203 (510)
T PRK15439 125 LAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI 203 (510)
T ss_pred HHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8999996 456899999999999999999999999999999999999999999999988753 589999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhh
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (554)
..+||+|++|++|++. +.|+++++...... +.+.......+ +...
T Consensus 204 ~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~---- 248 (510)
T PRK15439 204 RQLADRISVMRDGTIA-LSGKTADLSTDDII-----------------------QAITPAAREKS-------LSAS---- 248 (510)
T ss_pred HHhCCEEEEEECCEEE-EecChHHcCHHHHH-----------------------HHHhCcccccc-------cccc----
Confidence 9999999999999984 67888776432100 00000000000 0000
Q ss_pred hhccccccccceeeccC---CCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 400 QIEKPFQRKQMKIRFPE---RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 400 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
.. ..+.++. ....++++|+++|+++ .+|+++||+|++||++||+||||||||||+++|+|+++|
T Consensus 249 --~~------~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p 315 (510)
T PRK15439 249 --QK------LWLELPGNRRQQAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315 (510)
T ss_pred --cc------ccccccccccccCCCCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 00 0000110 1113466899999984 258999999999999999999999999999999999999
Q ss_pred CceEEEECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhh----cc---cC--CHHHHHHHHhhCCCChh
Q 008771 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEA----AE---DW--RIDDIKGLLGRCNFKAD 535 (554)
Q Consensus 477 ~~G~i~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~----~~---~~--~~~~~~~~L~~~~l~~~ 535 (554)
++|+|.++|.++ .++|++|++. ..+++..|+.+++... .. .. ....+..+|+.+++..+
T Consensus 316 ~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 395 (510)
T PRK15439 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFN 395 (510)
T ss_pred CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCC
Confidence 999999988643 3689999752 3467788999997532 00 01 12347789999999645
Q ss_pred hhccccCcCChhhhhcccC
Q 008771 536 MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 536 ~~~~~~~~LSGGek~Rl~l 554 (554)
..++++..|||||||||+|
T Consensus 396 ~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 396 HAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred CccCccccCCcHHHHHHHH
Confidence 6899999999999999975
No 14
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-65 Score=565.13 Aligned_cols=370 Identities=20% Similarity=0.335 Sum_probs=286.1
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN------ 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~------ 160 (554)
++|+++|++++|++ +++|+|+||+|.+||++||+|+||||||||+|+|+|+++| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 46999999999963 5799999999999999999999999999999999999986 79999998742
Q ss_pred --------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhC
Q 008771 161 --------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (554)
Q Consensus 161 --------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (554)
..|||++|++. +++..|+.+++...... . ...
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~ 125 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSL---------------H-----------------------RGM 125 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHH---------------h-----------------------cCC
Confidence 25999999975 44556888776421100 0 001
Q ss_pred CcccHHHHHHHHhhhcCCCcc--ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----
Q 008771 231 NLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (554)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---- 304 (554)
..+....++.++++.+|+... ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 122345678889999999642 35889999999999999999999999999999999999999999999988754
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR 384 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (554)
.|.|||+||||++++..+||+|++|++|++. +.|...++..... ..+ .+....
T Consensus 206 ~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~~~~-------~~~---------~~~~~~---------- 258 (529)
T PRK15134 206 LNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAATLFSAPT-------HPY---------TQKLLN---------- 258 (529)
T ss_pred cCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHHHHhhCCC-------CHH---------HHHHHH----------
Confidence 4899999999999999999999999999975 4465544322100 000 000000
Q ss_pred hHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecC-----------CccceeceEEEEecCCEE
Q 008771 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----------DRLLFNRANLTIERGEKT 453 (554)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~-----------~~~~l~~vs~~i~~Ge~i 453 (554)
... ...+. +. ...++++|+++|+++.|+ ++.+|+++||+|++||++
T Consensus 259 ------------~~~-~~~~~---------~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~ 315 (529)
T PRK15134 259 ------------SEP-SGDPV---------PL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETL 315 (529)
T ss_pred ------------hCc-ccccc---------cc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEE
Confidence 000 00000 00 112456899999999995 356899999999999999
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eEEEEecccccCCCCCCCHHHHHHhhcc----
Q 008771 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAEAAE---- 516 (554)
Q Consensus 454 aIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---- 516 (554)
+|+||||||||||+++|+|+++ ++|+|+++|.++ .++|++|++...+++..||.+++.....
T Consensus 316 ~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~ 394 (529)
T PRK15134 316 GLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP 394 (529)
T ss_pred EEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc
Confidence 9999999999999999999984 899999988543 2689999864357778899999976421
Q ss_pred --cC--CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 517 --DW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 517 --~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.. ....+..+|..+++..+..++++..|||||||||+|
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 436 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAI 436 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHH
Confidence 11 124578899999996556799999999999999975
No 15
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.6e-65 Score=561.07 Aligned_cols=357 Identities=26% Similarity=0.415 Sum_probs=283.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEc------------------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA------------------ 157 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~------------------ 157 (554)
|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998888999999999999999999999999999999999997 7999999885
Q ss_pred -----CC--------------------CceEEEEecc-cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHH
Q 008771 158 -----KS--------------------NMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211 (554)
Q Consensus 158 -----~~--------------------~~~i~~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (554)
|. ...++|++|+ +.+++..|+.+|+...+..
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----------------------- 137 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----------------------- 137 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-----------------------
Confidence 11 1248999997 5666778999988532100
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCC
Q 008771 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291 (554)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD 291 (554)
.....++..+++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 138 ----------------~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD 200 (520)
T TIGR03269 138 ----------------IGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred ----------------cCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 0011123345788899999996 45688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008771 292 LDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367 (554)
Q Consensus 292 ~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (554)
+.++.++.++|+ +.|.|||+||||++++.++||+|++|++|++. +.|++.++...... ..
T Consensus 201 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~~--------------~~- 264 (520)
T TIGR03269 201 PQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVFME--------------GV- 264 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHHHh--------------hc-
Confidence 999999877664 35899999999999999999999999999874 57888765431000 00
Q ss_pred HHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-----ccceec
Q 008771 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----RLLFNR 442 (554)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----~~~l~~ 442 (554)
. .. .++ .....++++|+++|+++.|++ +.+|++
T Consensus 265 ------~-------------------~~------~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~ 302 (520)
T TIGR03269 265 ------S-------------------EV------EKE-----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDN 302 (520)
T ss_pred ------h-------------------hh------ccc-----------cccCCCCceEEEeccEEEeccCCCCCceEEee
Confidence 0 00 000 000123568999999999952 468999
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC-Cce----------------eeEEEEecccccCCCCCC
Q 008771 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-EHN----------------VLPNYFEQNQAEALDLDK 505 (554)
Q Consensus 443 vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~-~~~----------------~~~~y~~Q~~~~~l~~~~ 505 (554)
+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ |.. ..++|++|++ .+++..
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~--~l~~~~ 380 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY--DLYPHR 380 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc--ccCCCC
Confidence 999999999999999999999999999999999999999994 311 1268999985 366789
Q ss_pred CHHHHHHhhcc-cC----CHHHHHHHHhhCCCCh----hhhccccCcCChhhhhcccC
Q 008771 506 TVLETVAEAAE-DW----RIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 506 tv~e~l~~~~~-~~----~~~~~~~~L~~~~l~~----~~~~~~~~~LSGGek~Rl~l 554 (554)
||.+++..... .. ....+..+|+.+++.. +..++++..|||||||||+|
T Consensus 381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 99999975321 11 1235778999999964 25789999999999999975
No 16
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.4e-65 Score=560.82 Aligned_cols=371 Identities=23% Similarity=0.315 Sum_probs=285.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC--CceeEEEcCCC-----------ceE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~~~~-----------~~i 163 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 37899999999988899999999999999999999999999999999999987 79999998742 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|+||++.+++..||.+|+....... ... ..........++.+++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~--------------~~~---------------------~~~~~~~~~~~~~~~l 125 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEIT--------------LPG---------------------GRMAYNAMYLRAKNLL 125 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhcccc--------------ccc---------------------cccCHHHHHHHHHHHH
Confidence 99999998888899999975321000 000 0001112345677889
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++.
T Consensus 126 ~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~ 205 (500)
T TIGR02633 126 RELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVK 205 (500)
T ss_pred HHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHH
Confidence 999996443467899999999999999999999999999999999999999999988864 45889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhh
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQ 400 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (554)
.+||+|++|++|++. +.|...++... ..+..+.. ..
T Consensus 206 ~~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~~------------------- 241 (500)
T TIGR02633 206 AVCDTICVIRDGQHV-ATKDMSTMSED-----------------------DIITMMVG-RE------------------- 241 (500)
T ss_pred HhCCEEEEEeCCeEe-eecCcccCCHH-----------------------HHHHHHhC-cc-------------------
Confidence 999999999999874 33433221100 00000000 00
Q ss_pred hccccccccceeeccCCCCCCCceEEEeeeeEec---CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC-
Q 008771 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP- 476 (554)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y---~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p- 476 (554)
.....+. .....++.+|+++|+++.| ++..+++++||+|++||+++|+||||||||||+++|+|+++|
T Consensus 242 ~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 313 (500)
T TIGR02633 242 ITSLYPH--------EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK 313 (500)
T ss_pred ccccccc--------cccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC
Confidence 0000000 0001235689999999999 345699999999999999999999999999999999999996
Q ss_pred CceEEEECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhc----c---cCC----HHHHHHHHhhCCCC
Q 008771 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAA----E---DWR----IDDIKGLLGRCNFK 533 (554)
Q Consensus 477 ~~G~i~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~----~---~~~----~~~~~~~L~~~~l~ 533 (554)
++|+|.++|.++ .++|++|++. ..++++.||.+++.... . ... ...+..+|+++++.
T Consensus 314 ~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 314 FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred CCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 899999987543 2589999853 24678889999986531 0 011 23578899999996
Q ss_pred hhhhccccCcCChhhhhcccC
Q 008771 534 ADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 534 ~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+..++++..|||||||||+|
T Consensus 394 ~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 394 TASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred CCCccCccccCCHHHHHHHHH
Confidence 445789999999999999975
No 17
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.9e-66 Score=561.76 Aligned_cols=366 Identities=23% Similarity=0.362 Sum_probs=284.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++|+++++|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999998899999999999999999999999999999999999999999999998742 2499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+..+.... .. ....+......++.++++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~--------------------~~~~~~~~~~~~~~~~l~ 127 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFV---------------NR--------------------FGRIDWKKMYAEADKLLA 127 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccc---------------cc--------------------cCccCHHHHHHHHHHHHH
Confidence 9999998888899999985421000 00 000011123456778899
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+|+. +..++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++..
T Consensus 128 ~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 128 RLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred HcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999987764 358899999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhh
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (554)
+||+|++|++|++. ..|...+.... +....... . + .
T Consensus 207 ~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~---~----------------~ 242 (501)
T PRK10762 207 ICDDVTVFRDGQFI-AEREVADLTED-----------------------SLIEMMVG-R---K----------------L 242 (501)
T ss_pred hCCEEEEEeCCEEE-EecCcCcCCHH-----------------------HHHHHhcC-C---C----------------c
Confidence 99999999999874 44444332110 00000000 0 0 0
Q ss_pred ccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
..+.+ . .+ ...++++++++|+++ .+++++||+|.+||+++|+||||||||||+++|+|+.+|++|+|
T Consensus 243 ~~~~~----~--~~--~~~~~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I 309 (501)
T PRK10762 243 EDQYP----R--LD--KAPGEVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 (501)
T ss_pred ccccc----c--cc--cCCCCcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence 00000 0 00 012356899999985 36999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhcc----c----C----CHHHHHHHHhhCCCChhhh
Q 008771 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----D----W----RIDDIKGLLGRCNFKADML 537 (554)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----~----~----~~~~~~~~L~~~~l~~~~~ 537 (554)
.++|.++ .++|++|++. ..+++..||.+++..... . . ....++.+|..+++..+..
T Consensus 310 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 389 (501)
T PRK10762 310 TLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM 389 (501)
T ss_pred EECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc
Confidence 9988543 2689999863 246678899999864210 0 1 1235788999999954457
Q ss_pred ccccCcCChhhhhcccC
Q 008771 538 DRKVSLLSGGEKIILLY 554 (554)
Q Consensus 538 ~~~~~~LSGGek~Rl~l 554 (554)
++++..|||||||||+|
T Consensus 390 ~~~~~~LSgGekqrv~l 406 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAI 406 (501)
T ss_pred cCchhhCCHHHHHHHHH
Confidence 99999999999999875
No 18
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-65 Score=558.52 Aligned_cols=367 Identities=22% Similarity=0.352 Sum_probs=284.2
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999998889999999999999999999999999999999999999999999998743 2599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+........ . .....+....++.++++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~-------------~-----------------------~~~~~~~~~~~~~~~l~ 126 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHK-------------G-----------------------GIVNRRLLNYEAREQLE 126 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccc-------------c-----------------------CCCCHHHHHHHHHHHHH
Confidence 99999988888999999864210000 0 00011223456788899
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.|.|||+||||++++..
T Consensus 127 ~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 127 HLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999998875 358999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhh
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (554)
+||+|++|++|++.. . ++.+..... + +....+.... .
T Consensus 206 ~~d~i~~l~~G~i~~-~--~~~~~~~~~----------~----------~~~~~~~~~~--------------------~ 242 (501)
T PRK11288 206 LCDAITVFKDGRYVA-T--FDDMAQVDR----------D----------QLVQAMVGRE--------------------I 242 (501)
T ss_pred hCCEEEEEECCEEEe-e--cCccccCCH----------H----------HHHHHhcCCC--------------------c
Confidence 999999999998752 2 211100000 0 0000000000 0
Q ss_pred ccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
... ....+ ...++++++++|+++. .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 243 ~~~-------~~~~~-~~~~~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i 310 (501)
T PRK11288 243 GDI-------YGYRP-RPLGEVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 (501)
T ss_pred ccc-------ccccc-cCCCCcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence 000 00000 1124567999999843 48999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhcc------c------CCHHHHHHHHhhCCCChhhh
Q 008771 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE------D------WRIDDIKGLLGRCNFKADML 537 (554)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~------~------~~~~~~~~~L~~~~l~~~~~ 537 (554)
+++|+++ .++|++|++. ..+++..|+.+++..... . .....++.+|+.+++..+..
T Consensus 311 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 390 (501)
T PRK11288 311 YLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390 (501)
T ss_pred EECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc
Confidence 9987643 2579999853 346678999999864311 0 01235788999999965568
Q ss_pred ccccCcCChhhhhcccC
Q 008771 538 DRKVSLLSGGEKIILLY 554 (554)
Q Consensus 538 ~~~~~~LSGGek~Rl~l 554 (554)
++++..|||||||||+|
T Consensus 391 ~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 391 EQLIMNLSGGNQQKAIL 407 (501)
T ss_pred cCccccCCHHHHHHHHH
Confidence 99999999999999975
No 19
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-64 Score=551.88 Aligned_cols=367 Identities=21% Similarity=0.250 Sum_probs=275.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|... .++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 58999999999888899999999999999999999999999999999999999999999876421 38999
Q ss_pred eccccccc--------CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 167 SQEFEVSM--------SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 167 ~Q~~~~~~--------~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
+|++.... ..|+.+++.. .....++
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~ 115 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQD-----------------------------------------------EVKDPAR 115 (490)
T ss_pred ccCcchhhcccchhhccccHHHhccc-----------------------------------------------chhHHHH
Confidence 99864311 2344433210 0112345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecC
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd 315 (554)
+.++++.+|+. +..++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||
T Consensus 116 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 116 CEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 77788999996 457899999999999999999999999999999999999999999999988754 47899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERL 395 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (554)
++++.++||+|++|++|++. +.|+++++..... + .++... +.+
T Consensus 195 ~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~~----------------~-------~~~~~~-------------~~~ 237 (490)
T PRK10938 195 FDEIPDFVQFAGVLADCTLA-ETGEREEILQQAL----------------V-------AQLAHS-------------EQL 237 (490)
T ss_pred HHHHHhhCCEEEEEECCEEE-EeCCHHHHhcchh----------------h-------hhhhhh-------------hcc
Confidence 99999999999999999974 5576655432100 0 000000 000
Q ss_pred HHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.. ...+..... ..+.....++++|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+.+
T Consensus 238 ~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 238 EG---VQLPEPDEP---SARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred Cc---cccCccccc---ccccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 00 000000000 000001124678999999999987779999999999999999999999999999999999877
Q ss_pred C-CceEEEECCcee-----------eEEEEecccccCCCCCCCHHHHHHhhcc-------cCC---HHHHHHHHhhCCCC
Q 008771 476 P-RGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFK 533 (554)
Q Consensus 476 p-~~G~i~~~~~~~-----------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~---~~~~~~~L~~~~l~ 533 (554)
| ++|+|.++|.++ .++|++|++........++.+++..... ... ...+..+|+.+++.
T Consensus 312 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 312 QGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred cccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 5 699999987532 2689999753212223567666543210 011 23578899999997
Q ss_pred hhhhccccCcCChhhhhcccC
Q 008771 534 ADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 534 ~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+..++++..|||||||||+|
T Consensus 392 ~~~~~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 392 KRTADAPFHSLSWGQQRLALI 412 (490)
T ss_pred hhhccCchhhCCHHHHHHHHH
Confidence 546789999999999999975
No 20
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-64 Score=546.06 Aligned_cols=364 Identities=20% Similarity=0.311 Sum_probs=278.7
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEEec
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQ 168 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v~Q 168 (554)
++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 4689999998899999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..||.+|+....... ... ........+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l~~~~l 124 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPT--------------KGM----------------------FVDQDKMYRDTKAIFDELDI 124 (491)
T ss_pred ccccccCCCHHHHhhcccccc--------------ccc----------------------ccCHHHHHHHHHHHHHHcCC
Confidence 998888899999985321000 000 00011223467788899998
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcce
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~ 325 (554)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+||+
T Consensus 125 ~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 125 D-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred C-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 6 456888999999999999999999999999999999999999999999888743 589999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhcccc
Q 008771 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPF 405 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (554)
|++|++|++. ..|+..+.... +....+.. .. ....+
T Consensus 204 i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~~-------------------~~~~~ 239 (491)
T PRK10982 204 ITILRDGQWI-ATQPLAGLTMD-----------------------KIIAMMVG-RS-------------------LTQRF 239 (491)
T ss_pred EEEEECCEEE-eecChhhCCHH-----------------------HHHHHHhC-CC-------------------ccccc
Confidence 9999999874 44443221100 00000000 00 00000
Q ss_pred ccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
+. +. ...++++|+++|+++.| +.+|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 240 ~~-------~~-~~~~~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 309 (491)
T PRK10982 240 PD-------KE-NKPGEVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred cc-------cc-CCCCCcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC
Confidence 00 00 11235689999999875 3589999999999999999999999999999999999999999999988
Q ss_pred ceee-----------EEEEecccc-cCCCCCCCHHHH-----HHhhcc--c-CC----HHHHHHHHhhCCCChhhhcccc
Q 008771 486 HNVL-----------PNYFEQNQA-EALDLDKTVLET-----VAEAAE--D-WR----IDDIKGLLGRCNFKADMLDRKV 541 (554)
Q Consensus 486 ~~~~-----------~~y~~Q~~~-~~l~~~~tv~e~-----l~~~~~--~-~~----~~~~~~~L~~~~l~~~~~~~~~ 541 (554)
.++. .+|++|++. ..++++.|+.++ +..... . .. ...++.+++.+++..+..++++
T Consensus 310 ~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 389 (491)
T PRK10982 310 KKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI 389 (491)
T ss_pred EECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc
Confidence 6542 578998753 235566777655 322111 1 01 2357889999999645679999
Q ss_pred CcCChhhhhcccC
Q 008771 542 SLLSGGEKIILLY 554 (554)
Q Consensus 542 ~~LSGGek~Rl~l 554 (554)
.+|||||||||+|
T Consensus 390 ~~LSgGq~qrv~l 402 (491)
T PRK10982 390 GSLSGGNQQKVII 402 (491)
T ss_pred ccCCcHHHHHHHH
Confidence 9999999999975
No 21
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-64 Score=514.83 Aligned_cols=412 Identities=30% Similarity=0.493 Sum_probs=330.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
...|.+.+++..||++.+|++-++++..|.++||||+||+|||||||+|+. |.|... -++|+..-.+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f-------~veqE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF-------HVEQEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc-------Cchhheeccc
Confidence 356899999999999999999999999999999999999999999999997 444322 2233321100
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHhhhcCCCcccc
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD-TLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~lgl~~~~~ 253 (554)
..-....+ +......+++.+ + . .+... ..++.+.++|..+||.++..
T Consensus 145 t~~~~~~l---------------------~~D~~~~dfl~~---e-~-------~l~~~~~l~ei~~~~L~glGFt~emq 192 (582)
T KOG0062|consen 145 TEALQSVL---------------------ESDTERLDFLAE---E-K-------ELLAGLTLEEIYDKILAGLGFTPEMQ 192 (582)
T ss_pred hHHHhhhh---------------------hccHHHHHHHHh---h-h-------hhhccchHHHHHHHHHHhCCCCHHHH
Confidence 00000000 000000000000 0 0 00001 23333445899999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
.+++.+||||||+|++|||||..+||+|||||||||||..++.||.++|+.++.|+|+||||+.|++.+|+.||++++-+
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceee
Q 008771 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (554)
Q Consensus 334 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (554)
+..|.|||++|+.++.+....++..|+.+++....++..+.++. .++.++.+.+.+++.+...+....+.......+.
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~Fr--Yna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~ 350 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFR--YNAARASSVQSRIKMLGKLPALKSTLIEVLIGFL 350 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhc--cCcccchhHHHHHHHhccCCCCCccceeccccee
Confidence 99999999999999999998899999988888888888888764 2333444555555555544433444444556677
Q ss_pred ccCC-CCCCCceEEEeeeeEecCCc--cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeE
Q 008771 414 FPER-GRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490 (554)
Q Consensus 414 ~~~~-~~~~~~~l~~~~l~~~y~~~--~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~ 490 (554)
||+. ...+.+++++.+++|.|+.. ..+.++++++..-++++++|+||+||||++|++.|.+.|.+|.+.+. .++++
T Consensus 351 fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-~r~ri 429 (582)
T KOG0062|consen 351 FPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-PRLRI 429 (582)
T ss_pred cCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-cccee
Confidence 8874 34577899999999999653 48899999999999999999999999999999999999999998886 56789
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++.+.++...+..+.+....+....++++..|+.||++++.+.+++..||||||.||+|
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvaf 493 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAF 493 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHH
Confidence 9999998888877778888888877778899999999999999999999999999999999975
No 22
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-61 Score=480.98 Aligned_cols=371 Identities=20% Similarity=0.329 Sum_probs=295.9
Q ss_pred CccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCCc----
Q 008771 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~~---- 161 (554)
.+.|.++|+++.|. ...++++|||+|.+||.+||||+||||||-..+.|+|+++. -+|+|.++|.+.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 45699999999995 46799999999999999999999999999999999999864 478999998642
Q ss_pred ----------eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHh
Q 008771 162 ----------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (554)
Q Consensus 162 ----------~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (554)
+|+++||+|. +.|-.|+...+...+ .....
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l--------------------------------------~~Hrg 125 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL--------------------------------------RLHRG 125 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHH--------------------------------------HHHhc
Confidence 6999999984 344446655443221 11223
Q ss_pred CCcccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----
Q 008771 230 VNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---- 303 (554)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---- 303 (554)
+.....++++.++|+.+|++. ..++.+|++|||||||||+||.||+.+|++||.||||++||+.....+.++|+
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 455667889999999999974 35688999999999999999999999999999999999999998888888764
Q ss_pred cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Q 008771 304 KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (554)
Q Consensus 304 ~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (554)
+.|+++++||||+..+.++||||++|..|.++. .|...+.... ....| ++.+++
T Consensus 206 ~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~~lF~~-------PqHpY---------Tr~Ll~--------- 259 (534)
T COG4172 206 ELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTETLFAA-------PQHPY---------TRKLLA--------- 259 (534)
T ss_pred HhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHHHHhhC-------CCChH---------HHHHHh---------
Confidence 479999999999999999999999999999753 3332222211 01111 000000
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-----------ccceeceEEEEecCCE
Q 008771 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEK 452 (554)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~vs~~i~~Ge~ 452 (554)
..|...+ ++....+.++++++++.+.|+- ..+++++||++++||.
T Consensus 260 ------------------aeP~g~~------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqT 315 (534)
T COG4172 260 ------------------AEPSGDP------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQT 315 (534)
T ss_pred ------------------cCCCCCC------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCe
Confidence 0110000 1112345789999999998852 2368899999999999
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------------EEEEecccccCCCCCCCHHHHHHhhcc---
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAEAAE--- 516 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-------------~~y~~Q~~~~~l~~~~tv~e~l~~~~~--- 516 (554)
+||||.+|||||||-.+|.+++++. |+|++.|.++. ...++|+|...|+|.+||.+.|.++..
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999999999887 99999998772 347899999999999999999988742
Q ss_pred -----cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 517 -----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 517 -----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
....+.+.+.|...|+++...+|.|+..|||||||++|
T Consensus 395 ~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAI 437 (534)
T COG4172 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAI 437 (534)
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHH
Confidence 12345688999999999999999999999999999875
No 23
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.8e-60 Score=520.55 Aligned_cols=355 Identities=25% Similarity=0.330 Sum_probs=264.7
Q ss_pred eEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE-----------EcCCC---------
Q 008771 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN--------- 160 (554)
Q Consensus 102 ~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-----------~~~~~--------- 160 (554)
+++++|+.+ .+|++++ ++++|+++||+|+||||||||+|+|+|+++|++|+|. ++|.+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 489999864 6999999 9999999999999999999999999999999999997 65532
Q ss_pred ---ceEEEEeccccccc---CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 ---MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
.++++.+|.....+ ..||.+++.. ..
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~------------------------------------------------~~ 188 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKK------------------------------------------------VD 188 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHh------------------------------------------------hh
Confidence 23566666544332 2266555421 01
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVII 312 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIii 312 (554)
...++.++++.+||. ...++++.+|||||+|||+||+||+.+|++|||||||++||+.++.++.+++++. |.|||+|
T Consensus 189 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 123567788889986 4578999999999999999999999999999999999999999999999887643 8999999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKL 392 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (554)
|||++++..+||+|++|+++. |.|..+....... .. ..++...+.. .
T Consensus 268 sHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~~--~~-------------i~~~~~~~~~-----~-------- 314 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGVR--VG-------------INEYLKGYLP-----E-------- 314 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCCc-----cccceecchhHHH--Hh-------------HHHHHHhcch-----h--------
Confidence 999999999999999997641 2221111111100 00 0000000000 0
Q ss_pred HHHHHhhhhccccccccceeeccCC--CCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHH
Q 008771 393 ERLQEEEQIEKPFQRKQMKIRFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (554)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L 470 (554)
+.+. .. + ....+.++.. ...+.++++++|+++.|++. .|+++||+|++||+++|+||||||||||+++|
T Consensus 315 e~~~----~~-~---~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 315 ENMR----IR-P---EPIEFEERPPRDESERETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred hhhh----cc-c---cCcceecCCCccccCCceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0000 00 0 0001111111 11356789999999999874 58999999999999999999999999999999
Q ss_pred hCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccC-CHHHHHHHHhhCCCChhhhccccCcCChhhh
Q 008771 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (554)
Q Consensus 471 ~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek 549 (554)
+|+++|++|+|.++ +.++|++|++. ++++.||.+++....... ....+..+|+.+++. +..++++.+||||||
T Consensus 386 ~Gl~~p~~G~I~~~---~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~ 459 (590)
T PRK13409 386 AGVLKPDEGEVDPE---LKISYKPQYIK--PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGEL 459 (590)
T ss_pred hCCCCCCceEEEEe---eeEEEeccccc--CCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHH
Confidence 99999999999885 56899999853 567889999987642222 233568899999996 678999999999999
Q ss_pred hcccC
Q 008771 550 IILLY 554 (554)
Q Consensus 550 ~Rl~l 554 (554)
|||+|
T Consensus 460 QRvai 464 (590)
T PRK13409 460 QRVAI 464 (590)
T ss_pred HHHHH
Confidence 99975
No 24
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-59 Score=471.01 Aligned_cols=433 Identities=31% Similarity=0.554 Sum_probs=339.5
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC---CCCCceeEEEcCCCceEEEEeccccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~---~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
..|.++|++.+-.++.+|.|.||.|-.|.++|||||||-||||||+.|+.- ++| ++.+-|+.|+...
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----------nIDvLlCEQEvva 332 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----------NIDVLLCEQEVVA 332 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----------CCceEeeeeeeee
Confidence 459999999999999999999999999999999999999999999999864 233 3557788888654
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
...+..+.++.+-.....+......+...++... .....++.+.+++ ...++.+..+.+++.+|..+||+..+
T Consensus 333 -d~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~taaErl~~v~~E----LraiGA~sAEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 333 -DSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TTAAERLKEVADE----LRAIGADSAEARARRILAGLGFSKEM 405 (807)
T ss_pred -cCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHH----HHHhccccchhHHHHHHhhcCCChhH
Confidence 3345555554443333333333333333333211 1111222222322 34567778899999999999999999
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCC
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g 332 (554)
.+|+...+|||||+||+|||||...|-+|+|||||||||....-||-++|+.+.+|++|||||-.|++.+|+.||+|++.
T Consensus 406 Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 406 QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHH-HHHHHHHh-------------
Q 008771 333 VSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK-KLERLQEE------------- 398 (554)
Q Consensus 333 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~------------- 398 (554)
++..|.|||.-|...+..........|+++++.++.++. .+..+..+....+ .+.+-+..
T Consensus 486 kLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa------~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~g 559 (807)
T KOG0066|consen 486 KLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKA------EGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAG 559 (807)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHhccccccCcccccc
Confidence 999999999999888877777777778777766654331 1222222211111 11111100
Q ss_pred --hhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 399 --EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 399 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
....+| ....++|.||....-..|++-+.+|+|.|++ .++|..++|-|.--.+|+||||||.||||||++|.|-+.
T Consensus 560 apELL~Rp-KEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 560 APELLQRP-KEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred CHHHHhCc-hheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC
Confidence 001111 1234678888877777899999999999964 689999999999999999999999999999999999999
Q ss_pred CCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 476 p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|..|+.+-+ +.+++|+|+|+..+.|..+.|..+.+...+ .....++|..|+.||+......-.+..||||||.||+|
T Consensus 639 P~~GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal 715 (807)
T KOG0066|consen 639 PNDGELRKN-HRLRIGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL 715 (807)
T ss_pred CCcchhhcc-ceeeeechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH
Confidence 999999875 788999999998889999999999998776 35678899999999996544446789999999999975
No 25
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-59 Score=488.49 Aligned_cols=369 Identities=26% Similarity=0.396 Sum_probs=295.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i 163 (554)
.+.++++|++|+|++.++|++|||+|.+||++||+|+||||||||+|+|+|.++|++|+|.++|.. ..|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 356899999999999999999999999999999999999999999999999999999999999853 369
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+.|+|+..+.+++||.||+..+.... .....++...+.+++.++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~-----------------------------------~~~g~id~~~m~~~A~~~l 130 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPT-----------------------------------RRFGLIDRKAMRRRARELL 130 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccc-----------------------------------cCCCccCHHHHHHHHHHHH
Confidence 99999999999999999986431100 0011234566788899999
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~ 320 (554)
+.+|+..+ .+.++.+||+||||.|+|||||..+++||||||||++|+....+.|.+.+ ++.|.+||+|||+++++.
T Consensus 131 ~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 131 ARLGLDID-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred HHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 99999733 78999999999999999999999999999999999999999988888765 568999999999999999
Q ss_pred hhcceEEEeeCCeeeeccCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhh
Q 008771 321 QLCTKIVETEMGVSRTYEGNY-SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (554)
++||||.+|++|+.+- ..+. .++- ..+.++.|.. +. +
T Consensus 210 ~i~DritVlRDG~~v~-~~~~~~~~~-----------------------~~~lv~~MvG-----r~---------~---- 247 (500)
T COG1129 210 EIADRITVLRDGRVVG-TRPTAAETS-----------------------EDELVRLMVG-----RE---------L---- 247 (500)
T ss_pred HhcCEEEEEeCCEEee-ecccccCCC-----------------------HHHHHHHhhC-----cc---------h----
Confidence 9999999999998642 1110 1100 1111222211 10 0
Q ss_pred hhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
...++. +.....+++++++++++.. ..++++||++++||++||.|--|+|+|.|+++|+|..++.+|
T Consensus 248 --~~~~~~-------~~~~~~~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G 314 (500)
T COG1129 248 --EDLFPE-------PPEEGIGEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG 314 (500)
T ss_pred --hhhccc-------ccccCCCCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc
Confidence 000000 0011346789999999863 258999999999999999999999999999999999999999
Q ss_pred EEEECCceee-----------EEEEecc-cccCCCCCCCHHHHHHhhcc-c----------CCHHHHHHHHhhCCCChhh
Q 008771 480 EVLLGEHNVL-----------PNYFEQN-QAEALDLDKTVLETVAEAAE-D----------WRIDDIKGLLGRCNFKADM 536 (554)
Q Consensus 480 ~i~~~~~~~~-----------~~y~~Q~-~~~~l~~~~tv~e~l~~~~~-~----------~~~~~~~~~L~~~~l~~~~ 536 (554)
+|.++|.++. ++|++-+ ..+.+.++.+|.+|+..+.. . .....++.+..++.++...
T Consensus 315 ~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s 394 (500)
T COG1129 315 EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394 (500)
T ss_pred eEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC
Confidence 9999998663 4688654 34678899999999865411 1 1123578889999999888
Q ss_pred hccccCcCChhhhhcccC
Q 008771 537 LDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 537 ~~~~~~~LSGGek~Rl~l 554 (554)
.+.++.+||||+||||.|
T Consensus 395 ~~~~v~~LSGGNQQKVvl 412 (500)
T COG1129 395 PEQPIGTLSGGNQQKVVL 412 (500)
T ss_pred ccchhhcCCchhhhhHHH
Confidence 899999999999999874
No 26
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-58 Score=519.58 Aligned_cols=256 Identities=26% Similarity=0.397 Sum_probs=197.3
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe---eeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~---~~l~~isl~i~~Ge 124 (554)
.+..+++.+....+|+.+..+|++..+..+...... ..........+.|+++||+|+|+.+ ++|+|+||.|++|+
T Consensus 303 sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~--~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~ 380 (1228)
T KOG0055|consen 303 SLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS--KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQ 380 (1228)
T ss_pred hhhccccchHHHhccccchHHHHHHhcCCCCCCccc--ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCC
Confidence 567777888889999999999999876655433321 1111122456779999999999865 59999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHH----HH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EM 190 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~----~~ 190 (554)
.+||||+|||||||++++|.++|.|++|+|.++|.+. +||.|+|+|.+ +..||+||+..+-.+ +.
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCCCcccHHHH
Confidence 9999999999999999999999999999999999764 59999999955 788999999765321 11
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 270 (554)
....++ ......+..+.+.++ ..-.++.+ +|||||||||||
T Consensus 460 ~~a~k~------------------------------------ana~~fi~~lp~g~~--T~vge~g~-qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 460 EEAAKA------------------------------------ANAHDFILKLPDGYD--TLVGERGV-QLSGGQKQRIAI 500 (1228)
T ss_pred HHHHHH------------------------------------ccHHHHHHhhHHhhc--ccccCCCC-CCChHHHHHHHH
Confidence 111110 111122233333222 12223333 699999999999
Q ss_pred HHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 271 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||||+.+|+|||||||||+||+++.+.+.+.|.+ .|.|.|+|+|+++.+.+ ||+|++|++|+++ ..|+.++.+..
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~Iv-E~G~h~ELi~~ 577 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIV-EQGTHDELIAL 577 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEE-EecCHHHHHhc
Confidence 9999999999999999999999999999999864 58999999999999987 9999999999984 44555554443
No 27
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.7e-58 Score=474.26 Aligned_cols=371 Identities=25% Similarity=0.371 Sum_probs=298.2
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
..+++++++|.|++..+++||||+|++||++||+|+||||||||+++|.|+++|++|+|+++|+. ..||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 45899999999999999999999999999999999999999999999999999999999999864 3699
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
||+|++.+.+++||.||+..+.... ....++.....+++.++.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~------------------------------------~~~~~~~~~~~~~i~~l~~ 126 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPS------------------------------------KGGLIDRRQARARIKELSE 126 (501)
T ss_pred EEeeccccccccchhhhhhhcCccc------------------------------------cccccCHHHHHHHHHHHHH
Confidence 9999999999999999997543110 0012234556788999999
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+||+ -+.++++.+||-||||||.|.+||+.+|++|||||||+.|-|...+.|.+.|+ +.|+|||+|||.+.++.+
T Consensus 127 ~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 127 RYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HhCCC-CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 99997 45689999999999999999999999999999999999999999999988764 579999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhh
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (554)
+||||.+|+.|+.+ |.++..... ..+++.+.|.+.. .
T Consensus 206 iaDrvTVLR~Gkvv---gt~~~~~~~--------------------t~~ela~lMvG~~--------------------v 242 (501)
T COG3845 206 IADRVTVLRRGKVV---GTVDPVAET--------------------TEEELAELMVGRE--------------------V 242 (501)
T ss_pred hhCeeEEEeCCeEE---eeecCCCCC--------------------CHHHHHHHhcCCc--------------------c
Confidence 99999999999863 222210000 0011111111100 0
Q ss_pred ccccccccceeeccCCCCCCCceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008771 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~ 480 (554)
..+ ... ....+++++++++++++.-.. ...++++||+|+.||++||.|-.|.|.+.|+.+|+|+.+|.+|+
T Consensus 243 ~~~-------~~~-~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~ 314 (501)
T COG3845 243 VLR-------VVK-PPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314 (501)
T ss_pred ccc-------ccc-CCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCce
Confidence 000 000 123467999999999986432 35789999999999999999999999999999999999999999
Q ss_pred EEECCcee------------eEEEEeccc-ccCCCCCCCHHHHHHhhccc-------------CCHHHHHHHHhhCCCCh
Q 008771 481 VLLGEHNV------------LPNYFEQNQ-AEALDLDKTVLETVAEAAED-------------WRIDDIKGLLGRCNFKA 534 (554)
Q Consensus 481 i~~~~~~~------------~~~y~~Q~~-~~~l~~~~tv~e~l~~~~~~-------------~~~~~~~~~L~~~~l~~ 534 (554)
|.++|+++ -.+|++.+. ...+-++.|+.||+...... .-...++.++++|++..
T Consensus 315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~ 394 (501)
T COG3845 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 (501)
T ss_pred EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence 99999886 136887654 56788999999997643221 11245788899999987
Q ss_pred hhhccccCcCChhhhhcccC
Q 008771 535 DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 535 ~~~~~~~~~LSGGek~Rl~l 554 (554)
.....++.+||||++||+.+
T Consensus 395 ~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 395 PSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred CCCCcchhhcCCcceehhhh
Confidence 77888999999999999854
No 28
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-55 Score=409.03 Aligned_cols=210 Identities=29% Similarity=0.488 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (554)
+|+++||+|+||+..+|++|||+|.+||+++||||||||||||||+|+|+.+|++|+|.++|.. .++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 5899999999999999999999999999999999999999999999999999999999999842 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|||++++|+.+||.||+..+.. ....++.++.++++.++|+.
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~--------------------------------------~v~~~~k~eA~~~A~~lL~~ 123 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPV--------------------------------------KVKKLSKAEAREKALELLEK 123 (240)
T ss_pred ecccccccccchHHHHHHhhhH--------------------------------------HHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999975421 11234556778889999999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~ 322 (554)
+||. +..+.+|.+|||||||||||||||+.+|+++|+|||||+|||+....+.+.+ .+.|.|+|+|||++.|+.++
T Consensus 124 VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 124 VGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 9997 5679999999999999999999999999999999999999999988887765 46799999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||||++|++|+++. .|+.+++..
T Consensus 203 adrviFmd~G~iie-~g~p~~~f~ 225 (240)
T COG1126 203 ADRVIFMDQGKIIE-EGPPEEFFD 225 (240)
T ss_pred hheEEEeeCCEEEE-ecCHHHHhc
Confidence 99999999998754 446666554
No 29
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.6e-51 Score=492.04 Aligned_cols=269 Identities=16% Similarity=0.251 Sum_probs=180.2
Q ss_pred hhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCCEE
Q 008771 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~ 126 (554)
......+..++.+..+.+++++..+.+++........ . ......|+++||+|+|++ .++|+|+||+|++||++
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~--~--~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGK--K--LKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCc--c--CCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 3445556778889999999988765543221100000 0 011135999999999975 36999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEc-CCCc----------eEEEEecccccccCccHHHHHHHhhHHHHH----
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEME---- 191 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~---- 191 (554)
||+|+||||||||+++|+|+++|++|+|.++ |.+. .||||+|++.++. .||+||+..+......
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~ 493 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEAL 493 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchh
Confidence 9999999999999999999999999999994 4432 4999999998865 6999999753210000
Q ss_pred --HHH-------H----HHHHHHH---HhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc----
Q 008771 192 --IAG-------K----LERVQKA---LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD---- 251 (554)
Q Consensus 192 --~~~-------~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~---- 251 (554)
... . ....... ......+.......++. ..-.....++.+.++++.+++...
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~v~~a~~~~~l~~~i~~l 565 (1466)
T PTZ00265 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM--------RKNYQTIKDSEVVDVSKKVLIHDFVSAL 565 (1466)
T ss_pred ccccccccccccccccccccccccccchhhhcccccchhhhhhc--------ccccccCCHHHHHHHHHHhCcHHHHHhC
Confidence 000 0 0000000 00000000000000000 000001112334444444443211
Q ss_pred ------ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 252 ------DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 252 ------~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
........|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .|.|+|+|||+++.+ +
T Consensus 566 p~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~ 644 (1466)
T PTZ00265 566 PDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-R 644 (1466)
T ss_pred ccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-H
Confidence 12455789999999999999999999999999999999999999999888754 379999999999998 4
Q ss_pred hcceEEEeeCC
Q 008771 322 LCTKIVETEMG 332 (554)
Q Consensus 322 ~~d~i~~l~~g 332 (554)
.||+|++|++|
T Consensus 645 ~aD~Iivl~~g 655 (1466)
T PTZ00265 645 YANTIFVLSNR 655 (1466)
T ss_pred hCCEEEEEeCC
Confidence 79999999885
No 30
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-50 Score=487.76 Aligned_cols=251 Identities=20% Similarity=0.281 Sum_probs=177.0
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+...+..+..+..+..+++|+.+....+..... .+.. . ......|+++|++|+|++ +++|+|+||+|++|+
T Consensus 570 pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~-~~~~-~---~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge 644 (1622)
T PLN03130 570 PLFMLPNLITQAVNANVSLKRLEELLLAEERVLL-PNPP-L---EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGS 644 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-cCCc-c---cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCC
Confidence 3444455566788888888888665543221100 0000 0 011235999999999964 579999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCc-eeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~-G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 203 (554)
.++|+|++|||||||+++|+|+++|++ |+|.+.+ .|+||+|++.+ ++.||+||+..+-... .++..+.+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---~Iayv~Q~p~L-fngTIreNI~fg~~~d------~e~y~~vl 714 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---TVAYVPQVSWI-FNATVRDNILFGSPFD------PERYERAI 714 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---eEEEEcCcccc-CCCCHHHHHhCCCccc------HHHHHHHH
Confidence 999999999999999999999999999 9998754 69999999988 4579999997542100 00000011
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
+. + .+...+..+-+ |......+ .-.+|||||||||+||||++.+|+||||
T Consensus 715 ~a---------------------~------~L~~di~~LP~--Gd~T~IGe-~G~~LSGGQKQRIaLARAly~~~~IlLL 764 (1622)
T PLN03130 715 DV---------------------T------ALQHDLDLLPG--GDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDVYIF 764 (1622)
T ss_pred HH---------------------h------CcHHHHHhCCC--cccccccC-CCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 00 0 01111111111 22221212 2357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHH-HHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 284 DEPTNHLDLDTIEWLE-GYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~-~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||||+||+++.+.+. +.+.. .++|+|+|||++..+. .||+|++|++|++. ..|+|++..
T Consensus 765 DEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~-e~Gt~~eL~ 827 (1622)
T PLN03130 765 DDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIK-EEGTYEELS 827 (1622)
T ss_pred CCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEE-EeCCHHHHH
Confidence 9999999999877664 34443 4799999999999986 49999999999874 456665543
No 31
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-50 Score=486.40 Aligned_cols=251 Identities=18% Similarity=0.263 Sum_probs=175.7
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+......+..+..+..+++|+.+....+..... . ... .......|+++|++|+|++ +++|+|+||+|++|+
T Consensus 570 pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-~-~~~---~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge 644 (1495)
T PLN03232 570 PLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-Q-NPP---LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c-cCC---cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCC
Confidence 3455555556788888888888776543321110 0 000 0011235999999999964 579999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (554)
+++|+|++|||||||+++|+|+++|++|.+.. ....|+||+|++.++ +.||+||+..+-... .++..+.++
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~--~~~~Iayv~Q~p~Lf-~gTIreNI~fg~~~~------~e~~~~vl~ 715 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVV--IRGSVAYVPQVSWIF-NATVRENILFGSDFE------SERYWRAID 715 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEE--ecCcEEEEcCccccc-cccHHHHhhcCCccC------HHHHHHHHH
Confidence 99999999999999999999999999987643 234699999999884 679999997542100 000000000
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeec
Q 008771 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (554)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLD 284 (554)
. + .+...+..+ . -|..... ...-.+|||||||||+||||++.+|+|||||
T Consensus 716 ~---------------------~------~L~~di~~L-p-~Gd~T~I-Ge~G~~LSGGQkQRIaLARAly~~~~IlLLD 765 (1495)
T PLN03232 716 V---------------------T------ALQHDLDLL-P-GRDLTEI-GERGVNISGGQKQRVSMARAVYSNSDIYIFD 765 (1495)
T ss_pred H---------------------h------CCHHHHHhC-C-CCCCcee-cCCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 0 001111111 0 0222211 1223579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 285 EPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 285 EPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||||+||+++.+.+.+. +.. .++|+|+|||+++.+. .||+|++|++|++. ..|+|++.
T Consensus 766 EptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~-~~Gt~~eL 826 (1495)
T PLN03232 766 DPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK-EEGTFAEL 826 (1495)
T ss_pred CCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEE-EecCHHHH
Confidence 99999999988776543 443 5799999999999986 59999999999874 45665554
No 32
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-50 Score=485.85 Aligned_cols=251 Identities=18% Similarity=0.258 Sum_probs=179.9
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+++|+.+....+........... . .......|+++|++|+|++ .++|+|+||+|++|++
T Consensus 589 pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~ 666 (1522)
T TIGR00957 589 PLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRT-I-KPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGAL 666 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccc-c-CCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCE
Confidence 4555555566788888888888665543321111000000 0 0011136999999999974 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (554)
++|+|+||||||||+++|+|+++|++|+|.++| .|+||+|++.+ ++.||+||+..+..... ...+++ +
T Consensus 667 v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---~i~yv~Q~~~l-~~~Ti~eNI~~g~~~~~---~~~~~~---~-- 734 (1522)
T TIGR00957 667 VAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---SVAYVPQQAWI-QNDSLRENILFGKALNE---KYYQQV---L-- 734 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---EEEEEcCCccc-cCCcHHHHhhcCCccCH---HHHHHH---H--
Confidence 999999999999999999999999999999986 69999999987 56799999975321000 000000 0
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
..+ .+. +.++.+ |.. ...+....+|||||||||+||||++.+|+++||
T Consensus 735 -------------------~~~------~l~----~~l~~~~~g~~-t~ig~~g~~LSGGQkqRiaLARAl~~~~~illL 784 (1522)
T TIGR00957 735 -------------------EAC------ALL----PDLEILPSGDR-TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLF 784 (1522)
T ss_pred -------------------HHh------CCH----HHHHhcCCCCC-ceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 000 001111 211 123455679999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHcc-----CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 284 DEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~~~l~~-----~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||||++||+.+.+.+.+.+.+ .++|+|+|||+++++.. ||+|++|++|++. ..|++++.
T Consensus 785 DEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~-~~g~~~~l 848 (1522)
T TIGR00957 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKIS-EMGSYQEL 848 (1522)
T ss_pred cCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEE-eeCCHHHH
Confidence 999999999999999887632 47899999999999976 9999999999874 44554443
No 33
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-51 Score=388.37 Aligned_cols=209 Identities=27% Similarity=0.425 Sum_probs=187.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+|+++||||.|+++.+++|+||+|++||+++|||||||||||+||+|+++++|++|+|.++|.++ +||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999998653 69999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
-|...+||++||.+|+..... ...++..++++++.++|..+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~---------------------------------------L~~w~k~~i~~r~~ELl~lv 121 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPK---------------------------------------LLGWDKERIKKRADELLDLV 121 (309)
T ss_pred hhhcccCCCccHHHHHHhhhh---------------------------------------hcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999864210 11345566788999999999
Q ss_pred CCCc-cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 008771 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~ 321 (554)
||++ ++.+|+|++|||||+|||.+||||+.+|++||+|||+++|||.++..|.+.+ ++.++|||+||||++++..
T Consensus 122 gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 122 GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 9986 6899999999999999999999999999999999999999999999887765 3579999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++|||++|++|++.-|. ..++.+
T Consensus 202 Ladri~vm~~G~i~Q~~-~P~~il 224 (309)
T COG1125 202 LADRIAVMDAGEIVQYD-TPDEIL 224 (309)
T ss_pred hhceEEEecCCeEEEeC-CHHHHH
Confidence 99999999999987664 334333
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-50 Score=386.45 Aligned_cols=197 Identities=30% Similarity=0.428 Sum_probs=175.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEeccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~ 170 (554)
..+.++++++.|++..+|+||||+|.+||+++||||||||||||||+|+|+.+|++|+|.++|.. ..++||||++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 35899999999999999999999999999999999999999999999999999999999998864 3799999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.++|..||.+|+..++.. ......+.++++.++|+.+||.
T Consensus 82 ~LlPW~Tv~~NV~l~l~~---------------------------------------~~~~~~e~~~~a~~~L~~VgL~- 121 (248)
T COG1116 82 ALLPWLTVLDNVALGLEL---------------------------------------RGKSKAEARERAKELLELVGLA- 121 (248)
T ss_pred cccchhhHHhhheehhhc---------------------------------------cccchHhHHHHHHHHHHHcCCc-
Confidence 999999999999754310 0112334456899999999996
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d~i 326 (554)
+..+++|++|||||||||+|||||+.+|++||||||+++||..++..+.+.| ++.+.|||+||||++++-.++|||
T Consensus 122 ~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRi 201 (248)
T COG1116 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRV 201 (248)
T ss_pred chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEE
Confidence 5779999999999999999999999999999999999999999987776654 567899999999999999999999
Q ss_pred EEeeCC
Q 008771 327 VETEMG 332 (554)
Q Consensus 327 ~~l~~g 332 (554)
++|.++
T Consensus 202 vvl~~~ 207 (248)
T COG1116 202 VVLSNR 207 (248)
T ss_pred EEecCC
Confidence 999874
No 35
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-50 Score=393.41 Aligned_cols=208 Identities=33% Similarity=0.545 Sum_probs=185.6
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
+|++++|+|.|.. ..+|+||||+|++||++||||.||||||||+|+|+++..|++|+|.++|.+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999975 4699999999999999999999999999999999999999999999998542
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
+|||+||++.+..+.||++|+..++. ...++..+++++
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe---------------------------------------iag~~k~ei~~R 121 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE---------------------------------------LAGVPKAEIKQR 121 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHh---------------------------------------hcCCCHHHHHHH
Confidence 59999999999999999999975531 012345678899
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisH 314 (554)
+.++|+.+||+ +..+++|.+|||||||||+|||||+.+|+|||+|||||+|||++.+.+.++|+ +.|.||++|||
T Consensus 122 V~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 122 VAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999998 78899999999999999999999999999999999999999999988888874 47999999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.|+.+.++||||.+|++|+++. .|...+..
T Consensus 201 Em~Vvk~ic~rVavm~~G~lvE-~G~v~~vF 230 (339)
T COG1135 201 EMEVVKRICDRVAVLDQGRLVE-EGTVSEVF 230 (339)
T ss_pred hHHHHHHHhhhheEeeCCEEEE-eccHHHhh
Confidence 9999999999999999999854 45554443
No 36
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.5e-50 Score=377.96 Aligned_cols=219 Identities=23% Similarity=0.408 Sum_probs=191.9
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------- 161 (554)
.+.|++++|+++||++.+++||||+|++||+++|+|+||||||||+|+|.|+++|++|+|.++|.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 4569999999999999999999999999999999999999999999999999999999999998753
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
++|++||.-.+|.++||+||+...+.+.. .++...+++.+..
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~--------------------------------------~lp~~~i~~lv~~ 127 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHT--------------------------------------KLPESLIRELVLM 127 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhc--------------------------------------cCCHHHHHHHHHH
Confidence 59999999999999999999986543211 1233445566677
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
-|+.+||.....+++|++|||||++|++||||++.+|++|++||||+||||.+...+.++++ ..|.|+|+||||++
T Consensus 128 KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 78999999877899999999999999999999999999999999999999988777666553 36999999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWI 352 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~ 352 (554)
.+..+||||+++.+|++ .+.|++++.....+.|.
T Consensus 208 s~~~i~Drv~~L~~gkv-~~~Gt~~el~~sd~P~v 241 (263)
T COG1127 208 SLLTIADRVAVLADGKV-IAEGTPEELLASDDPWV 241 (263)
T ss_pred HHHhhhceEEEEeCCEE-EEeCCHHHHHhCCCHHH
Confidence 99999999999999997 67899887776554444
No 37
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.4e-47 Score=456.57 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=174.8
Q ss_pred CccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eE
Q 008771 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i 163 (554)
...|+++||++.|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 35699999999995 57899999999999999999999999999999999999999999999988542 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
||+||++.+++.+||.|++..... + ......+.++++.+++
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~---------------l------------------------kg~~~~~~~~~v~~lL 1046 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQ---------------L------------------------KGRSWEEAQLEMEAML 1046 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHH
Confidence 999999988889999999853210 0 0011123345678899
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+.+||. +..++++.+|||||||||+||+||+.+|+||||||||++||+.+++.+.++|++ .|+|||++|||++++..
T Consensus 1047 ~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257 1047 EDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred HHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 999996 467899999999999999999999999999999999999999999999988754 48899999999999999
Q ss_pred hcceEEEeeCCeee
Q 008771 322 LCTKIVETEMGVSR 335 (554)
Q Consensus 322 ~~d~i~~l~~g~~~ 335 (554)
+||||++|++|++.
T Consensus 1126 laDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1126 LGDRIAIISQGRLY 1139 (2272)
T ss_pred hCCEEEEEECCEEE
Confidence 99999999999863
No 38
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-49 Score=376.27 Aligned_cols=200 Identities=28% Similarity=0.507 Sum_probs=177.8
Q ss_pred ccEEEEeEEEEeCCee----eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYKGVT----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~----~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
++|+++|+++.|+... +|++|||+|.+||++||||+||||||||.|+|+|+.+|++|+|.++|..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5699999999998776 9999999999999999999999999999999999999999999999842
Q ss_pred ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 ~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|-+|||||. +.|..||.+.+..++. ..+..+.+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~-----------------------------------------~~~~~~~~~~ 120 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLR-----------------------------------------PHGLSKSQQR 120 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhc-----------------------------------------cCCccHHHHH
Confidence 35899999984 5677898877654321 0123445667
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisH 314 (554)
+.++|+.+||+..+++|+|++|||||+|||||||||+.+|++||||||||+||+.....++++| ++++.|+|||||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999888888876 357899999999
Q ss_pred CHHHHHhhcceEEEeeCCeeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~ 336 (554)
|+..+..+||||++|++|.++.
T Consensus 201 dl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 201 DLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred cHHHHHHHhhheeeeeCCeEEE
Confidence 9999999999999999999864
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.2e-47 Score=462.00 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=150.5
Q ss_pred EeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHh
Q 008771 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (554)
Q Consensus 106 ~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~ 185 (554)
.++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+. ..|+|++|++.++ ..||+||+...
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---~~i~yv~Q~~~l~-~~Tv~enI~~~ 744 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---RSIAYVPQQAWIM-NATVRGNILFF 744 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---CeEEEEeCCCccC-CCcHHHHHHcC
Confidence 3455679999999999999999999999999999999999999999999875 3699999999874 67999999753
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChh
Q 008771 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSG 263 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGG 263 (554)
..... +.....++ ...+.+.++.+ |+.. ..+....+||||
T Consensus 745 ~~~~~------~~~~~~~~-------------------------------~~~l~~~l~~l~~g~~t-~i~~~g~~LSGG 786 (1560)
T PTZ00243 745 DEEDA------ARLADAVR-------------------------------VSQLEADLAQLGGGLET-EIGEKGVNLSGG 786 (1560)
T ss_pred ChhhH------HHHHHHHH-------------------------------HhhhHHHHHHhhccchH-HhcCCCCCCCHH
Confidence 21000 00000000 00112223333 4432 335567899999
Q ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH-H--ccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCC
Q 008771 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-L--GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (554)
Q Consensus 264 qrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l--~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~ 340 (554)
|||||+|||||+.+|++|||||||++||+.+.+.+.+. + ...|+|+|+||||++++. .||+|++|++|++ .+.|+
T Consensus 787 QkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i-~~~G~ 864 (1560)
T PTZ00243 787 QKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRV-EFSGS 864 (1560)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEE-EEecC
Confidence 99999999999999999999999999999987776553 2 124799999999999995 6999999999987 46677
Q ss_pred hhHHH
Q 008771 341 YSQYV 345 (554)
Q Consensus 341 ~~~~~ 345 (554)
|+++.
T Consensus 865 ~~~l~ 869 (1560)
T PTZ00243 865 SADFM 869 (1560)
T ss_pred HHHHH
Confidence 76653
No 40
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.7e-48 Score=380.88 Aligned_cols=212 Identities=27% Similarity=0.434 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+++++|++++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++|.+. .++||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 48999999999999999999999999999999999999999999999999999999999999653 69999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||.+...+..||.|.+..+-..... .+ .....+-++.+.+.|+.+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~--------------------~~---------------~~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLG--------------------LF---------------GRPSKEDEEIVEEALELL 126 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccc--------------------cc---------------cCCCHhHHHHHHHHHHHh
Confidence 9999888899999987643110000 00 000112234688889999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~ 322 (554)
|+. ++.+|.+.+|||||||||.|||||+++|++||||||||+||....-.+++.++ +.|.|+|+|.||++++.++
T Consensus 127 ~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 127 GLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred CcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 996 57899999999999999999999999999999999999999999888887764 4689999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++|++|++ .+.|...+.+
T Consensus 206 ad~~i~lk~G~i-~a~G~p~evl 227 (258)
T COG1120 206 ADHLILLKDGKI-VAQGTPEEVL 227 (258)
T ss_pred CCEEEEEECCeE-EeecCcchhc
Confidence 999999999997 5566655443
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3e-46 Score=449.60 Aligned_cols=184 Identities=23% Similarity=0.379 Sum_probs=142.0
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (554)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|++.++. .||+||+..+....
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---~iayv~Q~~~l~~-~Ti~eNI~~g~~~~ 514 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---RISFSPQTSWIMP-GTIKDNIIFGLSYD 514 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---EEEEEeCCCccCC-ccHHHHHHhccccc
Confidence 3589999999999999999999999999999999999999999999986 6999999998865 59999997542100
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-ccccCCCCCCCChhHHHHH
Q 008771 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv 268 (554)
.. ....+ + ..+ .+.+.+..+... .........+|||||||||
T Consensus 515 ~~---~~~~~---~---------------------~~~----------~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 515 EY---RYTSV---I---------------------KAC----------QLEEDIALFPEKDKTVLGEGGITLSGGQRARI 557 (1490)
T ss_pred hH---HHHHH---H---------------------HHH----------hHHHHHHhccccccccccCcCCCcCHHHHHHH
Confidence 00 00000 0 000 011112222110 0112344679999999999
Q ss_pred HHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 269 ~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
+||||++.+|+++||||||++||+.+.+.+.+. +.. .++|+|+|||+++++.. ||+|++|++|++.
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~ 626 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCY 626 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEE
Confidence 999999999999999999999999999988864 332 48999999999999975 9999999999763
No 42
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-48 Score=376.05 Aligned_cols=214 Identities=27% Similarity=0.428 Sum_probs=179.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEEEEe
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLS 167 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~~v~ 167 (554)
.++|+++|+++.|++.++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.+.|.+ .+|||||
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 356999999999987689999999999999999999999999999999999999999999988753 4799999
Q ss_pred ccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 168 QEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 168 Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|.. ...+..||+|.+..+...... ++ .... ..-.+.+.++|+.
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g--------------------~~--------------~~~~-~~d~~~v~~aL~~ 126 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKG--------------------WF--------------RRLN-KKDKEKVDEALER 126 (254)
T ss_pred cccccCCCCCcCHHHHHHccCccccc--------------------cc--------------cccc-HHHHHHHHHHHHH
Confidence 966 334567999987654211000 00 0011 1125678999999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~ 322 (554)
+|+. +..+|.+.+|||||+|||.|||||+.+|++|||||||+++|+.+...+.++|+ +.|+|||+||||+..+..+
T Consensus 127 Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 127 VGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred cCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence 9997 68899999999999999999999999999999999999999999999888764 3599999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|+.|+... .+.|+..++..
T Consensus 206 ~D~vi~Ln~~~--~~~G~~~~~~~ 227 (254)
T COG1121 206 FDRVICLNRHL--IASGPPEEVLT 227 (254)
T ss_pred CCEEEEEcCee--EeccChhhccC
Confidence 99999998764 46777766554
No 43
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-48 Score=394.35 Aligned_cols=212 Identities=28% Similarity=0.440 Sum_probs=185.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEe
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLS 167 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~ 167 (554)
+.|+++||+++|++..+++|+||+|++||+++|+||||||||||||+|+|++.|++|+|.++|.++ .|||||
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 569999999999999999999999999999999999999999999999999999999999998643 599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|+..+||++||.+|+..++... ......++.+++.++|+.++
T Consensus 84 Q~YALFPHltV~~NVafGLk~~--------------------------------------~~~~~~~i~~rv~e~L~lV~ 125 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVR--------------------------------------KKLKKAEIKARVEEALELVG 125 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhc--------------------------------------CCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999997654200 01122346789999999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH----HccCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~g~tvIiisHd~~~l~~~~ 323 (554)
+. .+.+|+|++|||||||||||||||+.+|++||||||.|+||..-+..+... .++.|.|+|+||||.+++..++
T Consensus 126 L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ms 204 (352)
T COG3842 126 LE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMS 204 (352)
T ss_pred ch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 97 478999999999999999999999999999999999999999887766554 4567999999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
|||++|++|++. -.|...++..+
T Consensus 205 DrI~Vm~~G~I~-Q~gtP~eiY~~ 227 (352)
T COG3842 205 DRIAVMNDGRIE-QVGTPEEIYER 227 (352)
T ss_pred cceEEccCCcee-ecCCHHHHhhC
Confidence 999999999984 45555555443
No 44
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.3e-47 Score=365.96 Aligned_cols=198 Identities=28% Similarity=0.455 Sum_probs=171.3
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+++++||++.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 3689999999953 379999999999999999999999999999999999999999999999843
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..||||||++.+.+.+||.||+..+..- ..........+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~---------------------------------------~~~~~~~~~~~ 121 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLI---------------------------------------AGKSAGRRKRA 121 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHH---------------------------------------cCCChhHHHHH
Confidence 2599999999999999999999753210 00011134567
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisH 314 (554)
+..+++.+|+.+...+++|.+|||||||||||||||+.+|++||.||||.+||.++.+.+.++++ +.|.|+|||||
T Consensus 122 ~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 88889999998666668899999999999999999999999999999999999999988888764 45899999999
Q ss_pred CHHHHHhhcceEEEeeCCee
Q 008771 315 DRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~ 334 (554)
|...+. .|||++.|.+|++
T Consensus 202 d~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 202 DPELAK-YADRVIELKDGKI 220 (226)
T ss_pred CHHHHH-hCCEEEEEeCCee
Confidence 999886 7999999999974
No 45
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-48 Score=375.36 Aligned_cols=210 Identities=29% Similarity=0.464 Sum_probs=182.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC---C--------ceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS---N--------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~---~--------~~i~~ 165 (554)
+|.++|+++.|+...+++||||.|+.||.+||+||||||||||||+|+|++.|++|.|.++|. + .+|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 489999999999999999999999999999999999999999999999999999999999986 2 36999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|||+..+|+.+||.+||..+..-. ....+...+..++.++|+.
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~-------------------------------------~~~p~~~~~r~rv~elL~l 124 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVR-------------------------------------KERPSEAEIRARVEELLRL 124 (345)
T ss_pred EEechhhcccchHHhhhhhccccc-------------------------------------ccCCChhhHHHHHHHHHHH
Confidence 999999999999999998664210 0012234567889999999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~ 321 (554)
+.|+ ...+++|.+|||||||||||||||+.+|++||||||+++||...+..|..+| .+.|.|+|+||||.+++.+
T Consensus 125 vqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 125 VQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 9996 5779999999999999999999999999999999999999998876666655 4579999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||||++|++|++.. .|+.++..
T Consensus 204 ladrvvvl~~G~Ieq-vg~p~ev~ 226 (345)
T COG1118 204 LADRVVVLNQGRIEQ-VGPPDEVY 226 (345)
T ss_pred hcceEEEecCCeeee-eCCHHHHh
Confidence 999999999999743 45554443
No 46
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-47 Score=386.76 Aligned_cols=203 Identities=30% Similarity=0.452 Sum_probs=180.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEe
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (554)
..|+++||+|+||+..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..|+|||
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 45899999999987669999999999999999999999999999999999999999999999854 3699999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|+..+||.+||++|+..+++. ..+..+++++++.++.+.++
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~---------------------------------------~~~~k~ei~~rV~eva~~L~ 122 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKL---------------------------------------RGVPKAEIDKRVKEVAKLLG 122 (338)
T ss_pred CCccccCCCcHHHHhhhhhhh---------------------------------------CCCchHHHHHHHHHHHHHcC
Confidence 999999999999999765321 12344667889999999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~ 323 (554)
+. +.++|+|.+|||||||||||||||+.+|+++|||||+|+||...+..+...+ ++.+.|+|+||||..++..++
T Consensus 123 l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla 201 (338)
T COG3839 123 LE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA 201 (338)
T ss_pred Ch-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC
Confidence 97 5789999999999999999999999999999999999999998877665554 357899999999999999999
Q ss_pred ceEEEeeCCeeeecc
Q 008771 324 TKIVETEMGVSRTYE 338 (554)
Q Consensus 324 d~i~~l~~g~~~~~~ 338 (554)
|||++|++|++.-..
T Consensus 202 dri~Vm~~G~i~Q~g 216 (338)
T COG3839 202 DRIVVMNDGRIQQVG 216 (338)
T ss_pred CEEEEEeCCeeeecC
Confidence 999999999885443
No 47
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-47 Score=356.30 Aligned_cols=215 Identities=24% Similarity=0.412 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 96 SGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 96 ~~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
.+|+++||++.| +++.+|+||||+|++||+++|||+||||||||||+|+|+..|++|+|.++|.+ .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 469999999999 77899999999999999999999999999999999999999999999999853 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|||+||.+.+.+..+|.+|++.+...... + +...+ .+...+-...+-+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s--------------------~----------~~slf-glfsk~dk~~Al~ 130 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTS--------------------T----------WRSLF-GLFSKEDKAQALD 130 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccch--------------------H----------HHHHh-CCCCHHHHHHHHH
Confidence 599999999999999999999754311100 0 00011 1122334566788
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
.|+++|+. +...++..+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|+ +.|.|+|+..|+++
T Consensus 131 aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 131 ALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 89999996 45677789999999999999999999999999999999999999888888875 46999999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
++.++||||+-|++|++ +|+|+.++
T Consensus 210 lA~~Y~~Riigl~~G~i-vfDg~~~e 234 (258)
T COG3638 210 LAKKYADRIIGLKAGRI-VFDGPASE 234 (258)
T ss_pred HHHHHHhhheEecCCcE-EEeCChhh
Confidence 99999999999999997 78998766
No 48
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.3e-45 Score=440.88 Aligned_cols=199 Identities=19% Similarity=0.154 Sum_probs=156.3
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC----CCCceeEEEcCCC---------ceEEEEecccccccCc
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKSN---------MKIAFLSQEFEVSMSR 176 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~----~p~~G~I~~~~~~---------~~i~~v~Q~~~~~~~~ 176 (554)
+++|+|+|++|++||+++|+||||||||||+|+|+|.. +|++|+|.++|.+ ..++|++|+..+++.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 56999999999999999999999999999999999986 5799999998853 2399999998888899
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH-HHHHHHhhhcCCCccccC-
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD-AKVSKLMPELGFTADDGD- 254 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~lgl~~~~~~- 254 (554)
||.|++..+..-. . .... . ......+.. ..++.+++.+||.+ ..+
T Consensus 154 TV~E~l~f~~~~~-------------~-~~~~----~--------------~~~~~~~~~~~~~~~~l~~lgL~~-~~~t 200 (1394)
T TIGR00956 154 TVGETLDFAARCK-------------T-PQNR----P--------------DGVSREEYAKHIADVYMATYGLSH-TRNT 200 (1394)
T ss_pred CHHHHHHHHHHhC-------------C-CCCC----C--------------CCCCHHHHHHHHHHHHHHHcCccc-ccCc
Confidence 9999986431100 0 0000 0 000011111 22456788899964 333
Q ss_pred ----CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH-HHHHhhcce
Q 008771 255 ----RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTK 325 (554)
Q Consensus 255 ----~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~-~~l~~~~d~ 325 (554)
..+..|||||||||+||++|+.+|+||+|||||+|||+.+...+.+.|++ .|.|+|+++|++ +.+.+++|+
T Consensus 201 ~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~ 280 (1394)
T TIGR00956 201 KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK 280 (1394)
T ss_pred eeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Confidence 34678999999999999999999999999999999999999988887753 488999999996 788899999
Q ss_pred EEEeeCCeeeeccCChh
Q 008771 326 IVETEMGVSRTYEGNYS 342 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~ 342 (554)
|++|++|++ .|.|+.+
T Consensus 281 v~~L~~G~i-v~~G~~~ 296 (1394)
T TIGR00956 281 VIVLYEGYQ-IYFGPAD 296 (1394)
T ss_pred EEEEeCCeE-EEECCHH
Confidence 999999986 4556554
No 49
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.9e-47 Score=344.92 Aligned_cols=202 Identities=28% Similarity=0.479 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------------e
Q 008771 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------K 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------------~ 162 (554)
+|+++||++.|++ .++|+||||+|++||++.|+||||||||||+|+|++..+|++|+|.++|.+. +
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999964 5599999999999999999999999999999999999999999999998642 6
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
||+||||..+.+..||+||+..++. .......++.+++.++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~---------------------------------------v~G~~~~~i~~rV~~~ 121 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR---------------------------------------VIGKPPREIRRRVSEV 121 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh---------------------------------------ccCCCHHHHHHHHHHH
Confidence 9999999999999999999975431 0123456678899999
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l 319 (554)
|+.+||. +..+..|.+|||||||||+||||++.+|++||.||||-+|||.....+++++ ...|+||||.|||.+.+
T Consensus 122 L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 122 LDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 9999997 4667889999999999999999999999999999999999999877776665 46799999999999999
Q ss_pred HhhcceEEEeeCCeeeecc
Q 008771 320 DQLCTKIVETEMGVSRTYE 338 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~ 338 (554)
+++-.|++.+++|++..+.
T Consensus 201 ~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 201 NRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HhccCcEEEEeCCEEEecc
Confidence 9999999999999986554
No 50
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=365.23 Aligned_cols=210 Identities=28% Similarity=0.442 Sum_probs=183.5
Q ss_pred ccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceE
Q 008771 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i 163 (554)
+++.++|++|+|++. .+|+++||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.+ .+|
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999765 89999999999999999999999999999999999999999999998854 259
Q ss_pred EEEecccccc-cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFEVS-MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~~~-~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|||+|+|..+ +..||.+.+..+..+ ..+..+++++++.++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n---------------------------------------~g~~~~e~~~rv~~~ 122 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLEN---------------------------------------LGLPREEIEERVAEA 122 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhh---------------------------------------cCCCHHHHHHHHHHH
Confidence 9999999655 577999988654311 123445678899999
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
+..+|+.. ..++++++|||||||||+||.+|+++|++|||||||++||+.++..+.+++++ .|+|+|++|||+++
T Consensus 123 l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 123 LELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 99999974 58999999999999999999999999999999999999999999999888753 36899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+..+||++++|++|++ .+.|...++..
T Consensus 202 ~~~~ad~v~vl~~G~i-~~~g~p~~i~~ 228 (235)
T COG1122 202 VLEYADRVVVLDDGKI-LADGDPAEIFN 228 (235)
T ss_pred HHhhCCEEEEEECCEE-eecCCHHHHhh
Confidence 9999999999999997 67777554443
No 51
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.5e-46 Score=382.41 Aligned_cols=209 Identities=27% Similarity=0.448 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+|+++||+++|++ .++|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4899999999952 479999999999999999999999999999999999999999999998753
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|||+||++.+++..||.+|+..+... ......+..+++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v 121 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEIKRKV 121 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 2599999999998889999998642100 001222345678
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++|++ .|.|||+||||
T Consensus 122 ~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 122 TELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8899999996 567899999999999999999999999999999999999999999999888754 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++.+.++||+|++|++|++. ..|+..++..
T Consensus 201 ~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~~ 230 (343)
T TIGR02314 201 MDVVKRICDCVAVISNGELI-EQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHHHc
Confidence 99999999999999999984 5677766543
No 52
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.2e-45 Score=377.97 Aligned_cols=208 Identities=27% Similarity=0.440 Sum_probs=180.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v 166 (554)
.+|+++||+|+|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 56999999999998899999999999999999999999999999999999999999999998854 259999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++.+||.||+..... + ......+...++.++++.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~ 126 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGR---------------Y------------------------FGLSAAAARALVPPLLEFA 126 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHc
Confidence 999999888999999753100 0 0011122345677888999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+||||||||++||+||+.+|++|||||||+|||+.++.++.+++++ .|.|||++||+++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 127 KLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred CCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 467889999999999999999999999999999999999999999999888754 5899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++ .+.|+.+++
T Consensus 206 d~i~il~~G~i-~~~g~~~~l 225 (306)
T PRK13537 206 DRLCVIEEGRK-IAEGAPHAL 225 (306)
T ss_pred CEEEEEECCEE-EEECCHHHH
Confidence 99999999998 566776544
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-45 Score=363.57 Aligned_cols=207 Identities=29% Similarity=0.433 Sum_probs=176.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ceEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKIA 164 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~i~ 164 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 478999999998899999999999999999999999999999999999999999999998732 2489
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+...... . .....+....++.++++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~---------------~-----------------------~~~~~~~~~~~~~~~l~ 122 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLRE---------------H-----------------------TRLSEEEIREIVLEKLE 122 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhh---------------c-----------------------cCCCHHHHHHHHHHHHH
Confidence 999999888888999998532100 0 00011223456778889
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~ 320 (554)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++.
T Consensus 123 ~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 123 AVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 99996 456889999999999999999999999999999999999999999999888754 4889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.+||+|++|++|++ .+.|+++++
T Consensus 202 ~~~d~v~~l~~G~i-~~~g~~~~~ 224 (235)
T cd03261 202 AIADRIAVLYDGKI-VAEGTPEEL 224 (235)
T ss_pred HhcCEEEEEECCeE-EEecCHHHH
Confidence 99999999999987 456766554
No 54
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.8e-45 Score=359.02 Aligned_cols=197 Identities=26% Similarity=0.446 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
+|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4789999999964 479999999999999999999999999999999999999999999998743 1
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|++|++.+++..||.+|+...... .....+..++++.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 121 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRI---------------------------------------IGVPPRDANERVSA 121 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHH
Confidence 489999999888888999998532100 00011123456778
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||+++
T Consensus 122 ~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 122 ALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 89999996 456888999999999999999999999999999999999999999999888754 48899999999999
Q ss_pred HHhhcceEEEeeCCe
Q 008771 319 LDQLCTKIVETEMGV 333 (554)
Q Consensus 319 l~~~~d~i~~l~~g~ 333 (554)
+..+||+|++|++|+
T Consensus 201 ~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 201 VETYRHRTLTLSRGR 215 (216)
T ss_pred HHHhCCEEEEEeCCc
Confidence 999999999999986
No 55
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-45 Score=380.82 Aligned_cols=209 Identities=26% Similarity=0.394 Sum_probs=181.3
Q ss_pred cEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEe
Q 008771 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (554)
+|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|||||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 77889999999999999999999999999999999999999999999999853 2599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++.+||.+|+..+... ......+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 123 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKI---------------------------------------RGMPKAEIEERVAEAARILE 123 (356)
T ss_pred CCccccCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112234567888999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~ 323 (554)
|. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||++++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 124 LE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred Ch-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 96 57899999999999999999999999999999999999999999998887764 35899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+|++|++|++. ..|+..++..
T Consensus 203 D~i~vl~~G~i~-~~g~~~~~~~ 224 (356)
T PRK11650 203 DRVVVMNGGVAE-QIGTPVEVYE 224 (356)
T ss_pred CEEEEEeCCEEE-EECCHHHHHh
Confidence 999999999984 4566665543
No 56
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-46 Score=341.87 Aligned_cols=208 Identities=30% Similarity=0.484 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCee-eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEE
Q 008771 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~-~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v 166 (554)
+|++.+++++|++.. +++||||++++|+++||+|+|||||||+||+|++++.|++|.|.++|.+. +||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 589999999999875 99999999999999999999999999999999999999999999998653 69999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+-+..++..+|++||+...- . ...+...++++++.++.+.+
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa----------------------------~-----------L~~l~~~~~kari~~l~k~l 121 (245)
T COG4555 81 FGERGLYARLTARENLKYFA----------------------------R-----------LNGLSRKEIKARIAELSKRL 121 (245)
T ss_pred cCCcChhhhhhHHHHHHHHH----------------------------H-----------HhhhhhhHHHHHHHHHHHHh
Confidence 98888999999999986421 0 01234456788899999999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~~ 323 (554)
++. +..++.+..||-||||||+|||||+++|+++||||||||||..+...+.+++ ++.|.+|||+||+++++..+|
T Consensus 122 ~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 122 QLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred ChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 996 5779999999999999999999999999999999999999999999888876 456999999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+|+++++|.+ ++.|+..+..
T Consensus 201 Drvivlh~Gev-v~~gs~~~l~ 221 (245)
T COG4555 201 DRVIVLHKGEV-VLEGSIEALD 221 (245)
T ss_pred heEEEEecCcE-EEcCCHHHHH
Confidence 99999999987 6778766543
No 57
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-45 Score=379.22 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=182.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v 166 (554)
+++|+++||++.|++..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 346999999999998889999999999999999999999999999999999999999999998853 369999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++.+||.+|+..++.. ......+..+++.++++.+
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 124 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKM---------------------------------------LGVPKEERKQRVKEALELV 124 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999999999999998643210 0012233456788899999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~ 322 (554)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+
T Consensus 125 gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 125 DLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 46789999999999999999999999999999999999999999998888764 3589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. ..|+.+++.
T Consensus 204 aD~i~vm~~G~i~-~~g~~~~~~ 225 (351)
T PRK11432 204 SDTVIVMNKGKIM-QIGSPQELY 225 (351)
T ss_pred CCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999985 456665543
No 58
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.7e-45 Score=369.89 Aligned_cols=208 Identities=30% Similarity=0.505 Sum_probs=179.6
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEE
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~ 165 (554)
..++++||++.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.++|.+ .+|||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 3478999999999 6999999999999999999999999999999999999999999999999843 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++.+||+|++..... + ........+++++++++.
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~---------------l------------------------~~~~~~~~~~~~~~~l~~ 123 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFAR---------------L------------------------YGLSKEEAEERIEELLEL 123 (293)
T ss_pred EccCCCCCccccHHHHHHHHHH---------------H------------------------hCCChhHHHHHHHHHHHH
Confidence 9999999999999999753210 0 000112345688999999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CC-CeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g-~tvIiisHd~~~l~~ 321 (554)
+||.. ..++++.+||+|||||++||.||+.+|++|||||||+|||+.++..+.++|++ .| .|||++||.++++..
T Consensus 124 ~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 124 FGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred cCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 99986 44788999999999999999999999999999999999999999999988753 45 799999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++ .+.|...++
T Consensus 203 ~~d~v~il~~G~~-~~~g~~~~l 224 (293)
T COG1131 203 LCDRVIILNDGKI-IAEGTPEEL 224 (293)
T ss_pred hCCEEEEEeCCEE-EEeCCHHHH
Confidence 9999999999998 455665553
No 59
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-45 Score=355.79 Aligned_cols=198 Identities=32% Similarity=0.470 Sum_probs=170.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+||+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 478999999988889999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...... . .........++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03259 81 YALFPHLTVAENIAFGLKL---------------R------------------------GVPKAEIRARVRELLELVGLE 121 (213)
T ss_pred hhhccCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 9888888999998532100 0 000112234567788899996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++.++||+
T Consensus 122 -~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 122 -GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred -hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 456888999999999999999999999999999999999999999999988754 488999999999999999999
Q ss_pred EEEeeCCeee
Q 008771 326 IVETEMGVSR 335 (554)
Q Consensus 326 i~~l~~g~~~ 335 (554)
|++|++|++.
T Consensus 201 v~~l~~G~i~ 210 (213)
T cd03259 201 IAVMNEGRIV 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999874
No 60
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.2e-45 Score=379.24 Aligned_cols=210 Identities=29% Similarity=0.448 Sum_probs=182.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEe
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (554)
.+|+++||+++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||||
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 35999999999998889999999999999999999999999999999999999999999998853 2599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++.+||.+|+..++.. ......+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~l~ 123 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKN---------------------------------------RGMGRAEVAERVAELLDLVG 123 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112234567888999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~ 323 (554)
|. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.+.|+|+||||++++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 124 LP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred CC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 96 47799999999999999999999999999999999999999999998888764 35899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+|++|++|++. ..|+..++..
T Consensus 203 d~i~vl~~G~i~-~~g~~~~~~~ 224 (353)
T TIGR03265 203 DRIVVMNHGVIE-QVGTPQEIYR 224 (353)
T ss_pred CEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999984 4566555443
No 61
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9e-44 Score=409.81 Aligned_cols=256 Identities=22% Similarity=0.339 Sum_probs=185.9
Q ss_pred HhhHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEEC
Q 008771 46 TCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKK 122 (554)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~ 122 (554)
...+...+.-+.+..++..+++|+-+....+......... .+.......++++|.+++.+. .+.|+||||+|++
T Consensus 470 r~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 470 RFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecC
Confidence 3466666666677888888888886655444322211110 122234456999999999864 3489999999999
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHH
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~ 202 (554)
|+.+||||+-|||||+|+.+|.|.++..+|+|.+.| .++||||.|.+ ++.||+|||..+-.-..+.
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---siaYv~Q~pWI-~ngTvreNILFG~~~d~~r---------- 612 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---SVAYVPQQPWI-QNGTVRENILFGSPYDEER---------- 612 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---eEEEeccccHh-hCCcHHHhhhcCccccHHH----------
Confidence 999999999999999999999999999999999987 49999999988 5679999998653211000
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEe
Q 008771 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282 (554)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLl 282 (554)
++.....|. + +.-+ ++|..-.. ....+| --+|||||||||+||||+.+++||+|
T Consensus 613 -----------------Y~~Vi~aC~-L-----~~Dl-e~Lp~GD~-TeIGEr-GinLSGGQKqRIsLARAVY~~adIYL 666 (1381)
T KOG0054|consen 613 -----------------YDKVIKACA-L-----KKDL-EILPFGDL-TEIGER-GINLSGGQKQRISLARAVYQDADIYL 666 (1381)
T ss_pred -----------------HHHHHHHcc-C-----HhHH-hhcCCCCc-ceecCC-ccCCcHhHHHHHHHHHHHhccCCEEE
Confidence 000000000 0 0000 00110000 112233 34899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 283 LDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 283 LDEPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||-|.|++|.+.-.++.+. ++. .++|+|+|||.++++.+ ||.|++|++|++ ...|+|++...
T Consensus 667 LDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I-~~~Gty~el~~ 731 (1381)
T KOG0054|consen 667 LDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKI-VESGTYEELLK 731 (1381)
T ss_pred EcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeE-ecccCHHHHHh
Confidence 9999999999987777654 432 47999999999999975 999999999997 67899998874
No 62
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.3e-45 Score=375.91 Aligned_cols=209 Identities=28% Similarity=0.448 Sum_probs=179.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~ 165 (554)
..+|+++||+++|+++.+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 356999999999999999999999999999999999999999999999999999999999998853 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++.+|+.+|+..... + ..........++.++++.
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~ll~~ 159 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGR---------------Y------------------------FGMSTREIEAVIPSLLEF 159 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHH
Confidence 9999998889999998752100 0 000111233456678888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. +..++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++ .|.|||++||+++++.++
T Consensus 160 ~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~ 238 (340)
T PRK13536 160 ARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL 238 (340)
T ss_pred cCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 9986 457889999999999999999999999999999999999999999999988754 589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||+|++|++|++ .+.|+.+++
T Consensus 239 ~d~i~il~~G~i-~~~g~~~~l 259 (340)
T PRK13536 239 CDRLCVLEAGRK-IAEGRPHAL 259 (340)
T ss_pred CCEEEEEECCEE-EEEcCHHHH
Confidence 999999999987 466766544
No 63
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-45 Score=355.03 Aligned_cols=203 Identities=29% Similarity=0.486 Sum_probs=173.7
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 578999999998899999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..||.+|+..... . ..........++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03265 81 DLSVDDELTGWENLYIHAR---------------L------------------------YGVPGAERRERIDELLDFVGL 121 (220)
T ss_pred CccccccCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 9988888899998753210 0 000112234567888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 122 L-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred H-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 456889999999999999999999999999999999999999999999887743 48899999999999999999
Q ss_pred eEEEeeCCeeeeccCCh
Q 008771 325 KIVETEMGVSRTYEGNY 341 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~ 341 (554)
+|++|++|++. ..|+.
T Consensus 201 ~i~~l~~G~i~-~~~~~ 216 (220)
T cd03265 201 RVAIIDHGRII-AEGTP 216 (220)
T ss_pred EEEEEeCCEEE-EeCCh
Confidence 99999999975 33443
No 64
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9e-45 Score=371.67 Aligned_cols=208 Identities=28% Similarity=0.434 Sum_probs=177.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v 166 (554)
.+|+++|++++|+++.+|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|||+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 45899999999998899999999999999999999999999999999999999999999998743 359999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..||.+|+..... . ..........++.++++.+
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~ll~~~ 123 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGR---------------Y------------------------FGMSTREIEAVIPSLLEFA 123 (303)
T ss_pred eccccCCcCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHC
Confidence 999988888999999752100 0 0001112234566788888
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++..+|
T Consensus 124 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~ 202 (303)
T TIGR01288 124 RLE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC 202 (303)
T ss_pred CCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 456888999999999999999999999999999999999999999999988754 4899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++ .+.|+.++.
T Consensus 203 d~i~~l~~G~i-~~~g~~~~~ 222 (303)
T TIGR01288 203 DRLCVLESGRK-IAEGRPHAL 222 (303)
T ss_pred CEEEEEECCEE-EEEcCHHHH
Confidence 99999999997 456765543
No 65
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.6e-44 Score=377.60 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=183.1
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEE
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~ 165 (554)
..++|+++|++++|++.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.. ..|||
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4466999999999998899999999999999999999999999999999999999999999999853 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++.+||.+|+..++.. .........+++.++++.
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~~~~~l~~ 131 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRM---------------------------------------QKTPAAEITPRVMEALRM 131 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhh---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 001122335567888999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~ 321 (554)
+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..
T Consensus 132 ~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~ 210 (375)
T PRK09452 132 VQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT 210 (375)
T ss_pred cCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9996 57799999999999999999999999999999999999999999998888764 358999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||+|++|++|++. ..|...++..
T Consensus 211 laDri~vl~~G~i~-~~g~~~~i~~ 234 (375)
T PRK09452 211 MSDRIVVMRDGRIE-QDGTPREIYE 234 (375)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999985 4566655443
No 66
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=377.23 Aligned_cols=208 Identities=26% Similarity=0.419 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
.|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4899999999998889999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.+|+...... ......+...++.++++.+||
T Consensus 83 ~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~lgL 123 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEEINQRVNQVAEVLQL 123 (369)
T ss_pred CcccCCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998643210 001112334567888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred h-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 6 567899999999999999999999999999999999999999999988877643 48999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. ..|+..++.
T Consensus 203 ~i~vl~~G~i~-~~g~~~~i~ 222 (369)
T PRK11000 203 KIVVLDAGRVA-QVGKPLELY 222 (369)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999974 456665543
No 67
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.1e-44 Score=375.39 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=181.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc--eeEEEcCCC--------ceEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS--GNVIKAKSN--------MKIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~--G~I~~~~~~--------~~i~~v 166 (554)
.|+++||+++|++..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ..|+||
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 3899999999998889999999999999999999999999999999999999999 999998753 259999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++.+||.+|+..++.. ..........++.++++.+
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 125 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRA---------------------------------------QKMPKADIAERVADALKLV 125 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998643210 0112223456788899999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cC-CCeEEEEecCHHHHHh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ-DVPMVIISHDRAFLDQ 321 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~-g~tvIiisHd~~~l~~ 321 (554)
||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +. |.|+|+||||++++..
T Consensus 126 gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 126 GLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT 204 (362)
T ss_pred CCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 996 56799999999999999999999999999999999999999999999888764 23 7899999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||+|++|++|++. ..|+..++..
T Consensus 205 l~dri~vl~~G~i~-~~g~~~~~~~ 228 (362)
T TIGR03258 205 LADKAGIMKDGRLA-AHGEPQALYD 228 (362)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999984 5577665543
No 68
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-44 Score=375.36 Aligned_cols=212 Identities=24% Similarity=0.407 Sum_probs=182.3
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEE
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAF 165 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~ 165 (554)
..++|+++|++++|++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|... .|||
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 34579999999999988899999999999999999999999999999999999999999999988532 5999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++.+||.||+..++.. ......+..+++.++++.
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 136 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQ---------------------------------------DKLPKAEIASRVNEMLGL 136 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 001122345678889999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~ 321 (554)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.+.| ++.|.|+|+||||++++..
T Consensus 137 l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~ 215 (377)
T PRK11607 137 VHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT 215 (377)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 9996 5678999999999999999999999999999999999999999998876544 4568999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||+|++|++|++. ..|...++..
T Consensus 216 laDri~vl~~G~i~-~~g~~~~~~~ 239 (377)
T PRK11607 216 MAGRIAIMNRGKFV-QIGEPEEIYE 239 (377)
T ss_pred hCCEEEEEeCCEEE-EEcCHHHHHh
Confidence 99999999999985 4566655443
No 69
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.6e-44 Score=362.27 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=178.0
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
+.+|+++||+++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 356999999999998899999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|++|++.+++..||.+|+...+... ..........++.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~--------------------------------------~~~~~~~~~~~~~~ 126 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREH--------------------------------------TQLPAPLLHSTVMM 126 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHc--------------------------------------cCCCHHHHHHHHHH
Confidence 4999999998888889999985321100 00001112345677
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~ 317 (554)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++
T Consensus 127 ~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 127 KLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 88899996 456888999999999999999999999999999999999999999998887753 3789999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++..+||+|++|++|++. +.|+.+++.
T Consensus 206 ~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 206 EVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred HHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999874 567665543
No 70
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.1e-44 Score=373.42 Aligned_cols=213 Identities=29% Similarity=0.436 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++|++++|++..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+|+||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4899999999998899999999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.+|+....... . ........+..+++.++++.+||
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~--------------~---------------------~~~~~~~~~~~~~~~~~l~~~~L 126 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVL--------------P---------------------RRERPNAAAIKAKVTQLLEMVQL 126 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhc--------------c---------------------cccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999986432100 0 00001122345678889999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d 324 (554)
+ +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+ +.+.|+|+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 127 A-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred c-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 56789999999999999999999999999999999999999999988887764 348999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+|++|++|++. ..|+..++..
T Consensus 206 ri~vl~~G~i~-~~g~~~~i~~ 226 (353)
T PRK10851 206 RVVVMSQGNIE-QAGTPDQVWR 226 (353)
T ss_pred EEEEEECCEEE-EEcCHHHHHh
Confidence 99999999984 5576665543
No 71
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.4e-44 Score=350.20 Aligned_cols=199 Identities=30% Similarity=0.463 Sum_probs=171.6
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 478999999998899999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...... .....+...+++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKL---------------------------------------RKVPKDEIDERVREVAELLQIE 121 (213)
T ss_pred hhhccCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999997532100 0001122345677788899986
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+
T Consensus 122 -~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 122 -HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 456889999999999999999999999999999999999999999999888753 489999999999999999999
Q ss_pred EEEeeCCeeee
Q 008771 326 IVETEMGVSRT 336 (554)
Q Consensus 326 i~~l~~g~~~~ 336 (554)
|++|++|++..
T Consensus 201 i~~l~~g~~~~ 211 (213)
T cd03301 201 IAVMNDGQIQQ 211 (213)
T ss_pred EEEEECCEEEe
Confidence 99999998753
No 72
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.1e-44 Score=366.33 Aligned_cols=207 Identities=25% Similarity=0.487 Sum_probs=179.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (554)
.++++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||+|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 3899999999998899999999999999999999999999999999999999999999998853 2599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..|+.||+..... + ..........++.++++.+|
T Consensus 82 q~~~l~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~g 122 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAG---------------I------------------------YGMKGQLLKQRVEEMIELVG 122 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHCC
Confidence 99998888999999752100 0 00111223456788899999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcce
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~ 325 (554)
+.. ..++++..|||||||||+||+||+.+|++|||||||+|||+.+++++.+.+++ .+.|||++||+++++.++|||
T Consensus 123 l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 123 LRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred Cch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE
Confidence 974 56899999999999999999999999999999999999999999999988754 378999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++. +.|+.+++
T Consensus 202 i~~l~~G~i~-~~g~~~~~ 219 (301)
T TIGR03522 202 VIIINKGKIV-ADKKLDEL 219 (301)
T ss_pred EEEEECCEEE-EeCCHHHH
Confidence 9999999984 67877654
No 73
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-44 Score=355.80 Aligned_cols=211 Identities=28% Similarity=0.443 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
.|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4899999999998899999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..||.+|+....... ... .........+++.++++.+|+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~---------------~~~--------------------~~~~~~~~~~~~~~~l~~~~l 126 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVK---------------PRS--------------------ERPPEAEIRAKVHELLKLVQL 126 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhc---------------ccc--------------------ccCCHHHHHHHHHHHHHHcCC
Confidence 998877889999985321100 000 000011223456778888998
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 127 D-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred h-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 6 456888999999999999999999999999999999999999999999888753 37899999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHH
Q 008771 325 KIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~ 344 (554)
+|++|++|++. +.|+.+++
T Consensus 206 ~i~~l~~G~i~-~~~~~~~~ 224 (239)
T cd03296 206 RVVVMNKGRIE-QVGTPDEV 224 (239)
T ss_pred EEEEEECCeEE-EecCHHHH
Confidence 99999999874 55655443
No 74
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.9e-44 Score=352.20 Aligned_cols=195 Identities=30% Similarity=0.492 Sum_probs=167.1
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------- 160 (554)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999976 789999999999999999999999999999999999999999999998732
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..++|++|++.+++..||.+|+...... ........++++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~ 121 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLL---------------------------------------AGVPKKERRERA 121 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhh---------------------------------------cCCCHHHHHHHH
Confidence 2599999999888888999997532100 000111234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+.. ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||
T Consensus 122 ~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 122 EELLERVGLGD-RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 78899999963 45888999999999999999999999999999999999999999999888753 47899999999
Q ss_pred HHHHHhhcceEEEeeCCe
Q 008771 316 RAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~ 333 (554)
++++. +||+|++|++|+
T Consensus 201 ~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 201 PELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHh-hhcEEEEeeCCc
Confidence 99997 999999999985
No 75
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-44 Score=350.79 Aligned_cols=198 Identities=32% Similarity=0.430 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEec
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q 168 (554)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 789999999999999999999999999999999999999999999998753 36999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+...... .....+....++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03293 81 QDALLPWLTVLDNVALGLEL---------------------------------------QGVPKAEARERAEELLELVGL 121 (220)
T ss_pred ccccccCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99887778999987532100 000111224567788899999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+++++ .+.|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 122 S-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred h-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 6 456888999999999999999999999999999999999999999999888753 47899999999999999999
Q ss_pred eEEEee--CCeee
Q 008771 325 KIVETE--MGVSR 335 (554)
Q Consensus 325 ~i~~l~--~g~~~ 335 (554)
+|++|+ +|++.
T Consensus 201 ~i~~l~~~~G~i~ 213 (220)
T cd03293 201 RVVVLSARPGRIV 213 (220)
T ss_pred EEEEEECCCCEEE
Confidence 999999 68864
No 76
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.5e-44 Score=350.32 Aligned_cols=197 Identities=29% Similarity=0.505 Sum_probs=169.2
Q ss_pred cEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ce
Q 008771 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~ 162 (554)
+|+++|++++| +++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 37899999999 46789999999999999999999999999999999999999999999998742 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++|++|++.+++..|+.+|+...... ........+.++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 121 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEV---------------------------------------RGKKEREIQRRVGAA 121 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 89999999888888999997532100 000111234567788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.+++ .+.|||+||||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 122 LRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8999986 456888999999999999999999999999999999999999999999888754 589999999999999
Q ss_pred HhhcceEEEeeCCe
Q 008771 320 DQLCTKIVETEMGV 333 (554)
Q Consensus 320 ~~~~d~i~~l~~g~ 333 (554)
..+||+|++|++|+
T Consensus 201 ~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 201 DRVAHRVIILDDGR 214 (214)
T ss_pred HHhcCEEEEecCCC
Confidence 99999999999873
No 77
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-44 Score=349.59 Aligned_cols=192 Identities=31% Similarity=0.549 Sum_probs=165.9
Q ss_pred EEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------eEEEEeccc
Q 008771 99 KLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQEF 170 (554)
Q Consensus 99 ~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------~i~~v~Q~~ 170 (554)
+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 7899999999999999999999999999999999999999999999988542 599999997
Q ss_pred cc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 171 EV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 171 ~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
.. ++..|+.||+...... .. ....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (205)
T cd03226 81 DYQLFTDSVREELLLGLKE-----------------------------------------LD--AGNEQAETVLKDLDLY 117 (205)
T ss_pred hhhhhhccHHHHHhhhhhh-----------------------------------------cC--ccHHHHHHHHHHcCCc
Confidence 43 3567999987532100 00 1124567788999996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceE
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i 326 (554)
+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|+|++|||++++..+||+|
T Consensus 118 -~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 118 -ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred -hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 456889999999999999999999999999999999999999999999888753 4889999999999999999999
Q ss_pred EEeeCCee
Q 008771 327 VETEMGVS 334 (554)
Q Consensus 327 ~~l~~g~~ 334 (554)
++|++|++
T Consensus 197 ~~l~~G~i 204 (205)
T cd03226 197 LLLANGAI 204 (205)
T ss_pred EEEECCEE
Confidence 99999975
No 78
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-45 Score=345.49 Aligned_cols=223 Identities=29% Similarity=0.402 Sum_probs=188.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
+++++++|+++||+-.+++||||+|++||+++||||||||||||+++|+|+++|++|+|.++|.++ .|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 468999999999999999999999999999999999999999999999999999999999998753 589
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
..||.+.+|+++||.||++.+...... ....+.. ........+..+++.++|+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-------~~~~l~~--------------------~~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-------LSGLLGR--------------------PRARKEEREARERARELLE 135 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-------hhhhhcc--------------------ccchhhHHHHHHHHHHHHH
Confidence 999999999999999999765321100 0000000 0000012345678899999
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~-~g~tvIiisHd~~~l~ 320 (554)
.+||. +..+++..+||+|||+|+.|||||+.+|++||||||.+||.+.....+.+.++ + .|.||++|.||+.++.
T Consensus 136 ~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm 214 (250)
T COG0411 136 FVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM 214 (250)
T ss_pred HcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh
Confidence 99997 57799999999999999999999999999999999999999998888887764 3 5799999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.+||||++|+.|++ ++.|++++....
T Consensus 215 ~l~dri~Vl~~G~~-IAeG~P~eV~~d 240 (250)
T COG0411 215 GLADRIVVLNYGEV-IAEGTPEEVRNN 240 (250)
T ss_pred hhccEEEeccCCcC-cccCCHHHHhcC
Confidence 99999999999986 789998876553
No 79
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-44 Score=371.95 Aligned_cols=207 Identities=29% Similarity=0.486 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 4679999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|+||++.+++..||.+|+...... ..........++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~ 121 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLEL---------------------------------------AGTPKAEIKARV 121 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 2599999999988889999998532100 001112234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 122 TELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7889999996 467889999999999999999999999999999999999999999999888753 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++.++||+|++|++|++. +.|...++
T Consensus 201 ~~~i~~~~d~v~~l~~G~i~-~~g~~~~~ 228 (343)
T PRK11153 201 MDVVKRICDRVAVIDAGRLV-EQGTVSEV 228 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999974 55665544
No 80
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-44 Score=347.43 Aligned_cols=198 Identities=28% Similarity=0.524 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------eEEEEecccc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEFE 171 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------~i~~v~Q~~~ 171 (554)
|+++|+++.|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 4789999999988899999999999999999999999999999999999999999999998643 5999999998
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+++..|+.+|+..... . .........+.+.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~l~-~ 120 (210)
T cd03269 81 LYPKMKVIDQLVYLAQ---------------L------------------------KGLKKEEARRRIDEWLERLELS-E 120 (210)
T ss_pred CCcCCcHHHHHHHHHH---------------H------------------------cCCChHHHHHHHHHHHHHcCCh-H
Confidence 8888899998753110 0 0001122345677888999986 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.+.+++ .+.|||+||||++++.++||++++
T Consensus 121 ~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 56788999999999999999999999999999999999999999999888753 478999999999999999999999
Q ss_pred eeCCeee
Q 008771 329 TEMGVSR 335 (554)
Q Consensus 329 l~~g~~~ 335 (554)
|++|++.
T Consensus 201 l~~g~i~ 207 (210)
T cd03269 201 LNKGRAV 207 (210)
T ss_pred EeCCEEE
Confidence 9999874
No 81
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.2e-44 Score=379.13 Aligned_cols=243 Identities=24% Similarity=0.373 Sum_probs=200.9
Q ss_pred hhhHHHHhccCcchhhhhhhccccCCCCCC----------CCCccEEEEeEEEEeCC-----------eeeEEceeEEEE
Q 008771 63 QSDVESLFSSSADEFENKKYSNKQSNTGAS----------SISSGVKLENISKSYKG-----------VTVLKDVTWEVK 121 (554)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~ls~~y~~-----------~~~l~~isl~i~ 121 (554)
.+..+++++.|.++|+.......+...... ...+.++++||++.|.. ..+++||||+|.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~ 315 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLR 315 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEec
Confidence 357788999999999888755544321110 14578999999999962 358999999999
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------ceEEEEeccc--ccccCccHHHHHHHhhH
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAFLSQEF--EVSMSRTVREEFMSAFK 187 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~ 187 (554)
+||++||||+||||||||.|+|+|+++|++|+|.++|.+ .++-++||+| .+.+.+||.+++...+.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 999999999999999999999999999999999998854 2588999998 46688899988764421
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHH
Q 008771 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (554)
-. ......+..+++.++|+.+||+...++|+|++||||||||
T Consensus 396 ~~--------------------------------------~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR 437 (539)
T COG1123 396 IH--------------------------------------GGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR 437 (539)
T ss_pred hh--------------------------------------cccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH
Confidence 00 0011233456799999999999888999999999999999
Q ss_pred HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
|+|||||+.+|++||+|||||+||+.....+.++|+ +.|.|+||||||+.++.++||||++|+.|+++.. |+-++
T Consensus 438 vaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~ 516 (539)
T COG1123 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEK 516 (539)
T ss_pred HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHH
Confidence 999999999999999999999999999888887764 4699999999999999999999999999998654 45444
Q ss_pred H
Q 008771 344 Y 344 (554)
Q Consensus 344 ~ 344 (554)
.
T Consensus 517 v 517 (539)
T COG1123 517 V 517 (539)
T ss_pred H
Confidence 3
No 82
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.8e-44 Score=350.08 Aligned_cols=199 Identities=30% Similarity=0.479 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCe----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceE
Q 008771 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i 163 (554)
+|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 37899999999876 79999999999999999999999999999999999999999999998743 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..||.+|+...... ..........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGL---------------------------------------YGLKGDELTARLEELA 121 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999999888888999997532100 0001122345677888
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 122 DRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred HHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999986 456888999999999999999999999999999999999999999999888753 4889999999999999
Q ss_pred hhcceEEEeeCCeee
Q 008771 321 QLCTKIVETEMGVSR 335 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~ 335 (554)
.+||+|++|++|++.
T Consensus 201 ~~~d~i~~l~~G~i~ 215 (218)
T cd03266 201 RLCDRVVVLHRGRVV 215 (218)
T ss_pred HhcCEEEEEECCEEe
Confidence 999999999999874
No 83
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.5e-44 Score=356.37 Aligned_cols=211 Identities=24% Similarity=0.417 Sum_probs=179.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------- 160 (554)
..|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 45899999999998899999999999999999999999999999999999999999999998742
Q ss_pred --------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
..|+|+||++.+++..|+.+|+...... . .....
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~--------------~------------------------~~~~~ 125 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------V------------------------LGLSK 125 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH--------------h------------------------CCCCH
Confidence 2589999999888888999998532100 0 00011
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tv 309 (554)
+..+.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|+ +.|.||
T Consensus 126 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 22345677889999997544478899999999999999999999999999999999999999999988764 358999
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 206 iivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 240 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQLF 240 (257)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhh
Confidence 99999999999999999999999974 567776654
No 84
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-44 Score=357.52 Aligned_cols=198 Identities=24% Similarity=0.400 Sum_probs=172.0
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEeccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~ 170 (554)
+.|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 55999999999998889999999999999999999999999999999999999999999997743 3599999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++..||.+|+...+. ...+.++.++++.+|+.
T Consensus 91 ~l~~~~tv~enl~~~~~---------------------------------------------~~~~~~~~~~l~~~gl~- 124 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLK---------------------------------------------GQWRDAALQALAAVGLA- 124 (257)
T ss_pred cCCCCCcHHHHHHhccc---------------------------------------------chHHHHHHHHHHHcCCh-
Confidence 88777899999753210 00123456778888986
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||+|
T Consensus 125 ~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 456888999999999999999999999999999999999999999998887743 4899999999999999999999
Q ss_pred EEeeCCeeeeccCC
Q 008771 327 VETEMGVSRTYEGN 340 (554)
Q Consensus 327 ~~l~~g~~~~~~G~ 340 (554)
++|++|++. +.|+
T Consensus 205 ~~l~~G~i~-~~~~ 217 (257)
T PRK11247 205 LLIEEGKIG-LDLT 217 (257)
T ss_pred EEEECCEEE-eecc
Confidence 999999874 3443
No 85
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.9e-44 Score=353.53 Aligned_cols=216 Identities=28% Similarity=0.432 Sum_probs=176.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 478999999998889999999999999999999999999999999999999999999998742 249999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..||.+|+....... . .. . + . .............++.++++.+
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~---------------~-~~--~-~---~-------~~~~~~~~~~~~~~~~~~l~~~ 131 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQAR---------------T-GS--G-L---L-------LARARREEREARERAEELLERV 131 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhc---------------c-cc--c-c---c-------cccccccHHHHHHHHHHHHHHc
Confidence 99999888899999985431100 0 00 0 0 0 0000000112345677889999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+|
T Consensus 132 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 210 (236)
T cd03219 132 GLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA 210 (236)
T ss_pred Ccc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 996 456889999999999999999999999999999999999999999999888753 5789999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++. ..|+.+++
T Consensus 211 d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 211 DRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred CEEEEEeCCEEE-eecCHHHh
Confidence 999999999874 55665543
No 86
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-45 Score=337.12 Aligned_cols=203 Identities=20% Similarity=0.316 Sum_probs=166.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc-----eeEEEcCCCc---------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GNVIKAKSNM--------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-----G~I~~~~~~~--------- 161 (554)
+.++++||++.|+++.+|+|||+.|++++++|||||||||||||||+++.+..... |+|.++|.++
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 45899999999999999999999999999999999999999999999999987764 9999998653
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
+||+|||.|..|+ +|++||+..+.+-.-. .+ ..+++.
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~--------------------------------------~~-~~ldei 125 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI--------------------------------------KD-KELDEI 125 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhcc--------------------------------------ch-HHHHHH
Confidence 6999999999877 8999999765421000 00 112222
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+++.|....|- .+.+++....||||||||++|||||+.+|+|||||||||+|||.+...+++++.+ ...||||||
T Consensus 126 Ve~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVT 205 (253)
T COG1117 126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVT 205 (253)
T ss_pred HHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEe
Confidence 22223222221 2445677789999999999999999999999999999999999988777777643 478999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeecc
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYE 338 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~ 338 (554)
|++.-+.+++|++.++..|.++.|.
T Consensus 206 HnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 206 HNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred CCHHHHHHHhHhhhhhcccEEEEEc
Confidence 9999999999999999999997774
No 87
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-44 Score=364.87 Aligned_cols=210 Identities=22% Similarity=0.341 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCe-----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~-----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
.|+++|++++|++. ++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999743 59999999999999999999999999999999999999999999986431
Q ss_pred -----------------------ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHH
Q 008771 161 -----------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216 (554)
Q Consensus 161 -----------------------~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (554)
..||||||++. .++..||.+|+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~---------------------------- 133 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS---------------------------- 133 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH----------------------------
Confidence 14899999873 33557999998532100
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHH
Q 008771 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE 296 (554)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~ 296 (554)
.........+++.++++.+||.....++++.+|||||||||+||+||+.+|++|||||||++||+.++.
T Consensus 134 -----------~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 134 -----------MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred -----------cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 011222345678889999999756778999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 297 WLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 297 ~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+.+.|+ +.|.|||+||||++++.++||||++|++|++ .+.|+..+...
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i-~~~g~~~~~~~ 254 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI-IKDGDTYDILS 254 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 9888774 3589999999999999999999999999997 46676655443
No 88
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8.5e-44 Score=367.31 Aligned_cols=213 Identities=21% Similarity=0.374 Sum_probs=179.1
Q ss_pred CccEEEEeEEEEeCC-------------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-
Q 008771 95 SSGVKLENISKSYKG-------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~-------------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~- 160 (554)
+++|+++||+++|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 467999999999952 469999999999999999999999999999999999999999999998753
Q ss_pred ------------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 008771 161 ------------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226 (554)
Q Consensus 161 ------------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (554)
..|+||+|++ .+++.+||.+|+....... .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~--------------~---------------------- 129 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY--------------H---------------------- 129 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh--------------c----------------------
Confidence 2599999998 4667889999986421100 0
Q ss_pred HHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--
Q 008771 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-- 304 (554)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-- 304 (554)
..+...+..+++.++++.+|+.....++++++|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 130 -~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 130 -PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 00112234556778899999965667999999999999999999999999999999999999999999888887642
Q ss_pred --CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 305 --QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 305 --~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.+.|+|+||||+.++.++||+|++|++|+++ ..|+.+++.
T Consensus 209 ~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~g~~~~i~ 250 (331)
T PRK15079 209 REMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-ELGTYDEVY 250 (331)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 4899999999999999999999999999884 456665544
No 89
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-43 Score=420.84 Aligned_cols=224 Identities=22% Similarity=0.274 Sum_probs=162.3
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCC-------ceEEEEecccccccCccHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN-------MKIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~-------~~i~~v~Q~~~~~~~~tv~ 179 (554)
+.+|+|+|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.+ ..++||+|+..+++.+||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 45999999999999999999999999999999999999998 9999998853 3599999998888899999
Q ss_pred HHHHHhhHHH-----HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc---
Q 008771 180 EEFMSAFKEE-----MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD--- 251 (554)
Q Consensus 180 e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--- 251 (554)
|++..+..-. .........-.. ......+. +.+..... ......+....++.+|+.+||++.
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek-~~~~~~~~--------~i~~~~~~-~~~~~~~~~~~~~~~L~~lGL~~~~~t 327 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREK-DAGIFPEA--------EVDLFMKA-TAMEGVKSSLITDYTLKILGLDICKDT 327 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHH-hccCCCch--------hhHHHHHH-hhhhcchhhHHHHHHHHHcCCccccCc
Confidence 9986432100 000000000000 00000000 00000000 000001122346778999999642
Q ss_pred -ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH-HHHHhhcce
Q 008771 252 -DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTK 325 (554)
Q Consensus 252 -~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~-~~l~~~~d~ 325 (554)
..+..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|++ .|.|+|+++|++ ..+.+++|+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 23667789999999999999999999999999999999999999988887753 488999999996 578889999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++ .|.|+.++.
T Consensus 408 vilL~~G~i-vy~G~~~~~ 425 (1470)
T PLN03140 408 IILLSEGQI-VYQGPRDHI 425 (1470)
T ss_pred EEEeeCceE-EEeCCHHHH
Confidence 999999987 466665443
No 90
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1e-43 Score=354.32 Aligned_cols=209 Identities=26% Similarity=0.449 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------------- 160 (554)
+|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5899999999998889999999999999999999999999999999999999999999987632
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++..|+.+|+...... . ..........+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--------------~------------------------~~~~~~~~~~~ 124 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVI--------------V------------------------KGEPKEEATAR 124 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHH--------------h------------------------cCCCHHHHHHH
Confidence 2589999999888888999998532100 0 00011123445
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecC
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd 315 (554)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||
T Consensus 125 ~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 125 ARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67788889996 45688899999999999999999999999999999999999999999988764 358899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++++..+||+|++|++|++. +.|+.+++.
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 204 MSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred HHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999874 567766543
No 91
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.7e-44 Score=352.72 Aligned_cols=209 Identities=23% Similarity=0.416 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------ceEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------~~i~ 164 (554)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 3789999999998889999999999999999999999999999999999999999999998743 1489
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+...... . .....+...+++.++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~--------------~------------------------~~~~~~~~~~~~~~~l~ 122 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLR--------------V------------------------RGASKEEAEKQARELLA 122 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHH--------------h------------------------cCCCHHHHHHHHHHHHH
Confidence 999999888888999998532100 0 00011223456778889
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.+.|||+||||++++..
T Consensus 123 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 123 KVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred HcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99996 45688899999999999999999999999999999999999999999988874 348999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||+|++|++|++. +.|++.++.
T Consensus 202 ~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 202 VASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred hCCEEEEEECCEEE-eeCCHHHHh
Confidence 99999999999974 567776654
No 92
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-44 Score=362.71 Aligned_cols=209 Identities=22% Similarity=0.327 Sum_probs=175.8
Q ss_pred EEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------
Q 008771 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 98 i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------- 161 (554)
|+++||+++|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 4699999999999999999999999999999999999999999999988532
Q ss_pred ---eEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 162 ---KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 162 ---~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
.|||+||++. .++..||.+|+...... ......+..+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~ 123 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN---------------------------------------FGVSEEDAKQ 123 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH---------------------------------------cCCCHHHHHH
Confidence 4999999973 23456999988532100 0011122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiis 313 (554)
++.++++.+||.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 124 KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6788899999975567899999999999999999999999999999999999999999999887743 489999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++++..+||||++|++|++ .+.|+..++..
T Consensus 204 Hd~~~~~~~~drv~~l~~G~i-~~~g~~~~~~~ 235 (290)
T PRK13634 204 HSMEDAARYADQIVVMHKGTV-FLQGTPREIFA 235 (290)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 999999999999999999997 46677666543
No 93
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-44 Score=355.77 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=171.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----eEEEEecccc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFE 171 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----~i~~v~Q~~~ 171 (554)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 47999999999888899999999999999999999999999999999999999999999987542 5899999998
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+++..||.+|+...... . .........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~gl~-~ 120 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQL---------------A------------------------GVEKMQRLEIAHQMLKKVGLE-G 120 (255)
T ss_pred cCCCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 88888999997532100 0 001112345677889999996 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++..+||+|+
T Consensus 121 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 56788999999999999999999999999999999999999999999988754 38899999999999999999999
Q ss_pred Eee--CCeee
Q 008771 328 ETE--MGVSR 335 (554)
Q Consensus 328 ~l~--~g~~~ 335 (554)
+|+ +|++.
T Consensus 201 ~l~~~~G~i~ 210 (255)
T PRK11248 201 LLSPGPGRVV 210 (255)
T ss_pred EEeCCCcEEE
Confidence 998 48764
No 94
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.3e-44 Score=345.59 Aligned_cols=194 Identities=32% Similarity=0.477 Sum_probs=169.5
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q~ 169 (554)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4789999999888999999999999999999999999999999999999999999999988643 59999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..||.+|+...... .. ..+.++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (208)
T cd03268 81 PGFYPNLTARENLRLLARL-----------------------------------------LG--IRKKRIDEVLDVVGLK 117 (208)
T ss_pred CccCccCcHHHHHHHHHHh-----------------------------------------cC--CcHHHHHHHHHHcCCH
Confidence 9888889999997532100 00 0134566778888885
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceE
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.++|++ .+.|+|+||||++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 118 -DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred -HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 456788999999999999999999999999999999999999999999888753 5899999999999999999999
Q ss_pred EEeeCCeee
Q 008771 327 VETEMGVSR 335 (554)
Q Consensus 327 ~~l~~g~~~ 335 (554)
++|++|++.
T Consensus 197 ~~l~~g~i~ 205 (208)
T cd03268 197 GIINKGKLI 205 (208)
T ss_pred EEEECCEEE
Confidence 999999864
No 95
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=8.6e-44 Score=348.06 Aligned_cols=204 Identities=28% Similarity=0.440 Sum_probs=172.7
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v 166 (554)
|+++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999986 7899999999999999999999999999999999999999999999987542 48999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..|+.+|+...... ..........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~ 121 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL---------------------------------------KGLPKSEIKEEVELLLRVL 121 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999887789999987532100 0001112334577788889
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d 324 (554)
|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++|||++++.++||
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 122 GLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 986 456788999999999999999999999999999999999999999999988754 35899999999999999999
Q ss_pred eEEEeeCCeeeeccCChh
Q 008771 325 KIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~ 342 (554)
+|++|++|++. ..|+.+
T Consensus 201 ~i~~l~~g~i~-~~~~~~ 217 (220)
T cd03263 201 RIAIMSDGKLR-CIGSPQ 217 (220)
T ss_pred EEEEEECCEEE-ecCCHH
Confidence 99999999875 445443
No 96
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-44 Score=351.02 Aligned_cols=207 Identities=31% Similarity=0.522 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCe----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+|+++|++++|+++ ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 37899999999876 89999999999999999999999999999999999999999999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|+||++.+++..|+.+|+...... . ..........+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEI---------------A------------------------GVPKAEIEERV 121 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2499999999888889999997532100 0 00111223456
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+. ...++++.+|||||+|||+||+||+.+|++|||||||++||+.++..+.+++++ .|.|||+||||
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 122 LELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 7788999986 456888999999999999999999999999999999999999999999888753 38899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||++++|++|++. ..|+..++
T Consensus 201 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (233)
T cd03258 201 MEVVKRICDRVAVMEKGEVV-EEGTVEEV 228 (233)
T ss_pred HHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999999984 45665543
No 97
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.1e-43 Score=350.23 Aligned_cols=206 Identities=28% Similarity=0.423 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (554)
|+++||+++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 478999999998899999999999999999999999999999999999999999999998742 249999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..|+.+|+...... . .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 121 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEI---------------R------------------------GLSKKEREEKLEELLEEF 121 (232)
T ss_pred cCCccccccCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999888888999997532100 0 000112234567788889
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++.+.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|+ +.+.|||++|||++++..+|
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 122 HIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT 200 (232)
T ss_pred CCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 986 45688899999999999999999999999999999999999999999888764 35889999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++. +.|+.+++
T Consensus 201 d~i~~l~~G~i~-~~~~~~~~ 220 (232)
T cd03218 201 DRAYIIYEGKVL-AEGTPEEI 220 (232)
T ss_pred CEEEEEECCeEE-EEeCHHHh
Confidence 999999999874 55665543
No 98
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-44 Score=361.26 Aligned_cols=210 Identities=22% Similarity=0.297 Sum_probs=176.5
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
+|+++|++|+|+. +.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4899999999963 2599999999999999999999999999999999999999999999988531
Q ss_pred ----eEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 162 ----KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 162 ----~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
.||||+|++. .++..||.+|+...... ......+..
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~ 121 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQN---------------------------------------FGIPKEKAE 121 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHH---------------------------------------cCCCHHHHH
Confidence 4899999973 33456999988532100 001122345
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
.++.++++.+|+.....++++.+||||||||++||+||+.+|++|||||||++||+.++..|.+.|+ +.|.|||+||
T Consensus 122 ~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vt 201 (288)
T PRK13643 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201 (288)
T ss_pred HHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5678889999996556789999999999999999999999999999999999999999999988764 3589999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++++..+||+|++|++|++ .+.|+.+++..
T Consensus 202 Hd~~~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 233 (288)
T PRK13643 202 HLMDDVADYADYVYLLEKGHI-ISCGTPSDVFQ 233 (288)
T ss_pred cCHHHHHHhCCEEEEEECCEE-EEECCHHHHHc
Confidence 999999999999999999998 46788776654
No 99
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=344.88 Aligned_cols=197 Identities=29% Similarity=0.458 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|+++.|+++++|+|+||+|++| +++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 57899999998889999999999999 999999999999999999999999999999998853 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..||.+|+...... .....+...+++.++++.+|+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l 120 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWL---------------------------------------KGIPSKEVKARVDEVLELVNL 120 (211)
T ss_pred CCcccccCCHHHHHHHHHHH---------------------------------------hCCCHHHHHHHHHHHHHHCCC
Confidence 99888888999997532100 000111234567778888998
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceE
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i 326 (554)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.++||++
T Consensus 121 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 121 G-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred H-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 456788999999999999999999999999999999999999999999998864 2689999999999999999999
Q ss_pred EEeeCCeee
Q 008771 327 VETEMGVSR 335 (554)
Q Consensus 327 ~~l~~g~~~ 335 (554)
++|++|++.
T Consensus 200 ~~l~~g~i~ 208 (211)
T cd03264 200 AVLNKGKLV 208 (211)
T ss_pred EEEECCEEE
Confidence 999999874
No 100
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.4e-43 Score=347.17 Aligned_cols=199 Identities=26% Similarity=0.447 Sum_probs=170.1
Q ss_pred cEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ce
Q 008771 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~ 162 (554)
+|+++|+++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 37899999999 66789999999999999999999999999999999999999999999998742 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++|++|++.+++..|+.+|+...... .....++...++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 121 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLII---------------------------------------AGASGDDIRRRVSAA 121 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 89999999888889999998532100 000111233456778
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+ +.+.|+|+||||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 122 LDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred HHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8889986 45688899999999999999999999999999999999999999988888765 3478999999999999
Q ss_pred HhhcceEEEeeCCeee
Q 008771 320 DQLCTKIVETEMGVSR 335 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~ 335 (554)
..+||+|++|++|++.
T Consensus 201 ~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 201 SRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHhCCEEEEEECCEEc
Confidence 9999999999999864
No 101
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7.5e-44 Score=353.77 Aligned_cols=215 Identities=27% Similarity=0.426 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ce
Q 008771 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~ 162 (554)
+|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 378999999998 7789999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++|+||++.+++..||.+|+.......... ..... .........++.++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~--------------------~~~~~-----------~~~~~~~~~~~~~~ 129 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPT--------------------WRSLL-----------GRFSEEDKERALSA 129 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccc--------------------hhhhh-----------ccccHHHHHHHHHH
Confidence 899999998888899999985421100000 00000 00011224567788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||+++
T Consensus 130 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 130 LERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred HHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 8999986 456888999999999999999999999999999999999999999999887753 37899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+.++||+|++|++|++. ..|+.+++
T Consensus 209 ~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 209 AKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 99999999999999974 56766553
No 102
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.6e-44 Score=346.64 Aligned_cols=197 Identities=29% Similarity=0.500 Sum_probs=169.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------eEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~i~~ 165 (554)
|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4789999999988999999999999999999999999999999999999999999999987432 4899
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..|+.+|+...... . .........+++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~--------------~------------------------~~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIK--------------V------------------------KGMSKAEAEERALELLEK 122 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHH--------------h------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999888889999997532100 0 000111234456778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||++|||++++.++
T Consensus 123 ~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 123 VGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred cCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 456889999999999999999999999999999999999999999999888753 478999999999999999
Q ss_pred cceEEEeeCCe
Q 008771 323 CTKIVETEMGV 333 (554)
Q Consensus 323 ~d~i~~l~~g~ 333 (554)
||+|++|++|+
T Consensus 202 ~d~i~~l~~g~ 212 (213)
T cd03262 202 ADRVIFMDDGR 212 (213)
T ss_pred CCEEEEEeCCc
Confidence 99999999885
No 103
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=352.09 Aligned_cols=214 Identities=26% Similarity=0.425 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ceE
Q 008771 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (554)
Q Consensus 98 i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~i 163 (554)
|+++||+++|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 789999999999999999999999999999999999999999999998743 249
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|+||++.+++..||.+|+.......... ...+ ..........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~--------------------~~~~-----------~~~~~~~~~~~~~~~l 129 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRST--------------------WRSL-----------FGLFPKEEKQRALAAL 129 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchh--------------------hhhh-----------cccCcHHHHHHHHHHH
Confidence 99999998888899999985421100000 0000 0000112234577788
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l 319 (554)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++
T Consensus 130 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 130 ERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred HHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999986 456888999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
..+||+|++|++|++. +.|+++++
T Consensus 209 ~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (241)
T cd03256 209 REYADRIVGLKDGRIV-FDGPPAEL 232 (241)
T ss_pred HHhCCEEEEEECCEEE-eecCHHHh
Confidence 9999999999999974 55766654
No 104
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=352.11 Aligned_cols=207 Identities=28% Similarity=0.413 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEE
Q 008771 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v 166 (554)
|+++|++++|++ +.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999987 789999999999999999999999999999999999999999999998743 258999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..||.+|+..... . .........+++.++++.+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~l 121 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPK---------------L------------------------LKWPKEKIRERADELLALV 121 (242)
T ss_pred ccCccccCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHc
Confidence 999988888999999753210 0 0001112345677889999
Q ss_pred CCCc-cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
|+.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++..
T Consensus 122 ~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9974 356888999999999999999999999999999999999999999999888753 38999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++. +.|+..++
T Consensus 202 ~~d~i~~l~~G~i~-~~~~~~~~ 223 (242)
T cd03295 202 LADRIAIMKNGEIV-QVGTPDEI 223 (242)
T ss_pred hCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999984 45655443
No 105
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=8.5e-44 Score=346.55 Aligned_cols=196 Identities=28% Similarity=0.450 Sum_probs=168.0
Q ss_pred EEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ceE
Q 008771 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (554)
Q Consensus 98 i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~i 163 (554)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 689999999999999999999999999999999999999999999998742 149
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..|+.+|+...... .....+...+++.+++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEV---------------------------------------TGVPPREIRKRVPAAL 121 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999999888889999997532100 0001112345677788
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 122 ELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 889986 456888999999999999999999999999999999999999999999887753 4899999999999999
Q ss_pred hhcceEEEeeCCe
Q 008771 321 QLCTKIVETEMGV 333 (554)
Q Consensus 321 ~~~d~i~~l~~g~ 333 (554)
.+||+|++|++|+
T Consensus 201 ~~~d~i~~l~~G~ 213 (214)
T cd03292 201 TTRHRVIALERGK 213 (214)
T ss_pred HhCCEEEEEeCCc
Confidence 9999999999885
No 106
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=359.73 Aligned_cols=210 Identities=23% Similarity=0.411 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
.|+++||++.|++ +++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 469999999999999999999999999999999999999999999998743
Q ss_pred -ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 -MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 -~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|||+||++. .++..||.+|+...... ..+...+..++
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~ 122 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPIN---------------------------------------LGLSEEEIENR 122 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHH---------------------------------------CCCCHHHHHHH
Confidence 25899999974 33567999998532100 00112234456
Q ss_pred HHHHhhhcCCCc-cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 008771 239 VSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiis 313 (554)
+.++++.+||.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.+|.+++++ .|.|||+||
T Consensus 123 ~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 788899999962 457899999999999999999999999999999999999999999999888743 489999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++++..+||+|++|++|++. +.|+..++..
T Consensus 203 Hd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13637 203 HSMEDVAKLADRIIVMNKGKCE-LQGTPREVFK 234 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999974 5677666543
No 107
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.8e-43 Score=395.79 Aligned_cols=211 Identities=30% Similarity=0.488 Sum_probs=186.0
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc-cc
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EV 172 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~-~~ 172 (554)
...+|+++||+++|+++++|+|+||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+ |.+..|||++|++ .+
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAEL 394 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCccccc
Confidence 346799999999999889999999999999999999999999999999999999999999998 5667899999986 46
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
++..||.+++...... .........+..++..+|+..+.
T Consensus 395 ~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~ 433 (635)
T PRK11147 395 DPEKTVMDNLAEGKQE-----------------------------------------VMVNGRPRHVLGYLQDFLFHPKR 433 (635)
T ss_pred CCCCCHHHHHHhhccc-----------------------------------------ccccchHHHHHHHHHhcCCCHHH
Confidence 6788999987532100 00001123567788889997666
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEee-C
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE-M 331 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~-~ 331 (554)
.++++.+|||||||||+||++|+.+|+||||||||||||+.+++.|.++|+++++|||+||||++++..+||+|++|+ +
T Consensus 434 ~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~ 513 (635)
T PRK11147 434 AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGN 513 (635)
T ss_pred HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCC
Confidence 789999999999999999999999999999999999999999999999999888899999999999999999999998 8
Q ss_pred CeeeeccCChhHHHH
Q 008771 332 GVSRTYEGNYSQYVL 346 (554)
Q Consensus 332 g~~~~~~G~~~~~~~ 346 (554)
|++..|.|+|++|..
T Consensus 514 g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 514 GKIGRYVGGYHDARQ 528 (635)
T ss_pred CeEEEccCCHHHHHH
Confidence 999999999999965
No 108
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=350.42 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=177.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------------- 161 (554)
+|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 48999999999988999999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 162 -~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
.|+|++|++.+++..|+.+|+....... . .........++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~--------------~------------------------~~~~~~~~~~~~ 123 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRV--------------L------------------------GLSKDQALARAE 123 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHH--------------c------------------------CCCHHHHHHHHH
Confidence 4899999998888899999985311000 0 001112234577
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~ 317 (554)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.+.+++ .+.|+|+||||++
T Consensus 124 ~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 124 KLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 888899996 466888999999999999999999999999999999999999999999888753 5899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++.++||+|++|++|++. +.|+++++
T Consensus 203 ~~~~~~d~i~~l~~g~i~-~~~~~~~~ 228 (242)
T PRK11124 203 VARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred HHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 999999999999999974 66777654
No 109
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-45 Score=334.34 Aligned_cols=211 Identities=30% Similarity=0.434 Sum_probs=182.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
+.+.++|+.|+|+.++++++|||+|++||+|||+|||||||||.+.+++|+.+|++|+|.+++.++ .||
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 458999999999999999999999999999999999999999999999999999999999998653 599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc--cHHHHHHHH
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKL 242 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 242 (554)
|+||++..|-.+||.||++..+.-. ..+.+ +...+++++
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~---------------------------------------~~d~~~~~~~~~l~~L 123 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIR---------------------------------------EKDLKKAERKEELDAL 123 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhh---------------------------------------hcchhHHHHHHHHHHH
Confidence 9999999999999999997542100 00111 223457789
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHH---HHHHccCCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l---~~~l~~~g~tvIiisHd~~~l 319 (554)
|++|.+. +..+++..+||||||+|+.|||||+.+|+++|||||++|.||.+...+ ...|++.|..|+|+.|+..+.
T Consensus 124 L~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt 202 (243)
T COG1137 124 LEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET 202 (243)
T ss_pred HHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH
Confidence 9999996 466888899999999999999999999999999999999999876555 455678899999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
..+|||.+++.+|++ .+.|+.++.+..
T Consensus 203 L~i~dRaYIi~~G~v-la~G~p~ei~~n 229 (243)
T COG1137 203 LDICDRAYIISDGKV-LAEGSPEEIVNN 229 (243)
T ss_pred HhhhheEEEEecCeE-EecCCHHHHhcC
Confidence 999999999999987 688988877654
No 110
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.2e-43 Score=348.88 Aligned_cols=207 Identities=23% Similarity=0.370 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (554)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 3789999999998899999999999999999999999999999999999999999999998753 2599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..|+.+|+...... ...........+.++++.+|
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 121 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAAL---------------------------------------HGLSRAEARERIAALLARLG 121 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999888889999987532100 00011122345677888899
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~ 323 (554)
+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|+|++|||++++.. |
T Consensus 122 l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~ 199 (236)
T TIGR03864 122 LA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-D 199 (236)
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-C
Confidence 86 456888999999999999999999999999999999999999999999887743 47899999999999975 9
Q ss_pred ceEEEeeCCeeeeccCChhHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+|++|++|++. ..|+.+++.
T Consensus 200 d~i~~l~~G~i~-~~~~~~~~~ 220 (236)
T TIGR03864 200 DRLVVLHRGRVL-ADGAAAELR 220 (236)
T ss_pred CEEEEEeCCeEE-EeCCHHHHH
Confidence 999999999974 456655443
No 111
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.6e-43 Score=372.26 Aligned_cols=211 Identities=30% Similarity=0.408 Sum_probs=180.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+|||
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 36899999999999999999999999999999999999999999999999999999999998843 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC--cccHHHHHHHHh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN--LDTLDAKVSKLM 243 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 243 (554)
++|++.+++.+||.+|+........ . .+. .....+++.+++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~-----------------------~--------------~~~~~~~~~~~~v~~~l 124 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHR-----------------------S--------------RFDTWTETDRAAVERAM 124 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhc-----------------------c--------------cccCCCHHHHHHHHHHH
Confidence 9999998889999999864311000 0 000 112345678899
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+|+. +..++++.+|||||||||+|||||+++|++|||||||++||+.++..+.++|+ +.+.|||++|||++++.
T Consensus 125 e~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~ 203 (402)
T PRK09536 125 ERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA 203 (402)
T ss_pred HHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 999996 56789999999999999999999999999999999999999999988888765 35889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++||||++|++|++. +.|++++++
T Consensus 204 ~~adrii~l~~G~iv-~~G~~~ev~ 227 (402)
T PRK09536 204 RYCDELVLLADGRVR-AAGPPADVL 227 (402)
T ss_pred HhCCEEEEEECCEEE-EecCHHHHh
Confidence 999999999999974 567776554
No 112
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-43 Score=357.33 Aligned_cols=207 Identities=26% Similarity=0.383 Sum_probs=174.8
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEE
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~ 164 (554)
++|+++|+++.|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 3689999999996 5679999999999999999999999999999999999999999999998843 2599
Q ss_pred EEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|+||++. .++..||.+|+...... ..+.....+.++..++
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 123 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVN---------------------------------------MGLDKDEVERRVEEAL 123 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 34567999998532100 0011122345677889
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
+.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||++|||++++.
T Consensus 124 ~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 124 KAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999996 567899999999999999999999999999999999999999999999888753 4899999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
++||+|++|++|++. +.|+..+
T Consensus 203 ~~~d~i~~l~~G~i~-~~g~~~~ 224 (274)
T PRK13647 203 EWADQVIVLKEGRVL-AEGDKSL 224 (274)
T ss_pred HhCCEEEEEECCEEE-EECCHHH
Confidence 999999999999974 5566543
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.5e-43 Score=346.72 Aligned_cols=199 Identities=27% Similarity=0.408 Sum_probs=169.7
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
++|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 56999999999975 369999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..++|++|++.+++..|+.+|+..... . .........+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~---------------~------------------------~~~~~~~~~~ 125 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPAL---------------L------------------------RGESSRQSRN 125 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHH---------------h------------------------cCCCHHHHHH
Confidence 259999999988888899999753210 0 0001112345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEe
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIIS 313 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiis 313 (554)
++.++++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|+ +.|.|||+||
T Consensus 126 ~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 126 GAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred HHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 678889999996 45688899999999999999999999999999999999999999999998874 3488999999
Q ss_pred cCHHHHHhhcceEEEeeCCeee
Q 008771 314 HDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||++++.. ||+|++|++|++.
T Consensus 205 H~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 205 HDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred cCHHHHHh-CCEEEEEECCEEE
Confidence 99999864 9999999999874
No 114
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.9e-44 Score=345.39 Aligned_cols=195 Identities=32% Similarity=0.479 Sum_probs=165.1
Q ss_pred EEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEE
Q 008771 99 KLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (554)
Q Consensus 99 ~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v 166 (554)
+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 789999999999999999999999999999999999999999999998742 258999
Q ss_pred eccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 167 SQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 167 ~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+|++.. ++..|+.+|+...... ..........++.++++.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLEN---------------------------------------LGLPEEEIEERVEEALEL 121 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 999753 5678999987532100 000111223456778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||++++..+
T Consensus 122 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 122 VGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred cCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 456888999999999999999999999999999999999999999999888753 478999999999999999
Q ss_pred cceEEEeeCCe
Q 008771 323 CTKIVETEMGV 333 (554)
Q Consensus 323 ~d~i~~l~~g~ 333 (554)
||+|++|++|+
T Consensus 201 ~d~i~~l~~G~ 211 (211)
T cd03225 201 ADRVIVLEDGK 211 (211)
T ss_pred CCEEEEEeCCC
Confidence 99999999873
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.9e-43 Score=345.90 Aligned_cols=196 Identities=24% Similarity=0.442 Sum_probs=167.1
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------- 160 (554)
|+++||+++|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 789999999964 579999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|++|++.+++..|+.+|+..... .. .........++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~ 122 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKSVKEAKERA 122 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHH
Confidence 259999999988778899999753210 00 00111223456
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 123 YEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7788899996 456888999999999999999999999999999999999999999999888752 48899999999
Q ss_pred HHHHHhhcceEEEeeCCee
Q 008771 316 RAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~ 334 (554)
++++.. ||+|++|++|++
T Consensus 202 ~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 202 LELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHHHhh-cCEEEEEeCCEe
Confidence 999965 899999999976
No 116
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=363.14 Aligned_cols=212 Identities=22% Similarity=0.385 Sum_probs=177.7
Q ss_pred CccEEEEeEEEEeCC----------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----
Q 008771 95 SSGVKLENISKSYKG----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~----------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---- 160 (554)
.++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 356999999999962 479999999999999999999999999999999999999999999998743
Q ss_pred ---------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHh
Q 008771 161 ---------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (554)
Q Consensus 161 ---------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (554)
..|+||||++ .+.+.+||.+++...+... ..
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--------------------------------------~~ 124 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--------------------------------------TS 124 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--------------------------------------cC
Confidence 2599999998 4667789988774321100 00
Q ss_pred CCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----C
Q 008771 230 VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (554)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~ 305 (554)
+...+...++.++|+.+||.....++++++|||||+|||+|||||+.+|++||+||||++||+.++.++.++|++ .
T Consensus 125 ~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 125 LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 112234457888999999975567899999999999999999999999999999999999999999998887743 5
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|.|+|+||||+.++.++||+|++|++|+++ ..|+..++.
T Consensus 205 g~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~~~ 243 (327)
T PRK11308 205 GLSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQIF 243 (327)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 899999999999999999999999999985 456655443
No 117
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.5e-43 Score=362.49 Aligned_cols=199 Identities=29% Similarity=0.459 Sum_probs=170.2
Q ss_pred EEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEecccccccC
Q 008771 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQEFEVSMS 175 (554)
Q Consensus 105 ~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~Q~~~~~~~ 175 (554)
|+|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .|||+||++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 468888899999999999999999999999999999999999999999999988532 59999999998888
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCC
Q 008771 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (554)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (554)
+||.+|+..... + ..........++.++++.+|+. ...++
T Consensus 81 ~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 120 (302)
T TIGR01188 81 LTGRENLEMMGR---------------L------------------------YGLPKDEAEERAEELLELFELG-EAADR 120 (302)
T ss_pred CcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHcCCh-hHhCC
Confidence 999999753110 0 0011122345678889999996 45789
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCC
Q 008771 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g 332 (554)
++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++ .|.|||++|||++++.++||+|++|++|
T Consensus 121 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999888753 4899999999999999999999999999
Q ss_pred eeeeccCChhHH
Q 008771 333 VSRTYEGNYSQY 344 (554)
Q Consensus 333 ~~~~~~G~~~~~ 344 (554)
++. +.|+.+++
T Consensus 201 ~i~-~~g~~~~l 211 (302)
T TIGR01188 201 RII-AEGTPEEL 211 (302)
T ss_pred EEE-EECCHHHH
Confidence 974 56766544
No 118
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=358.03 Aligned_cols=209 Identities=22% Similarity=0.321 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
.|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999974 469999999999999999999999999999999999999999999998853
Q ss_pred ---ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..|+|++|++. .++..||.+|+...... .........
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~ 122 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN---------------------------------------FGFSEDEAK 122 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH---------------------------------------cCCCHHHHH
Confidence 14899999973 33457999987532100 001112234
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
+++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+ +.|.|||+||
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivs 202 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202 (287)
T ss_pred HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5678889999996456789999999999999999999999999999999999999999999988875 3588999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++..+||+|++|++|++ .+.|...++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~ 233 (287)
T PRK13641 203 HNMDDVAEYADDVLVLEHGKL-IKHASPKEIF 233 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHHh
Confidence 999999999999999999997 4566665543
No 119
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=349.27 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
..|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 35899999999988889999999999999999999999999999999999999999999998743 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++. .|+.+|+...... . .....++.++++.
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~------------------------------------------~-~~~~~~~~~~l~~ 117 (241)
T PRK14250 82 VFQQPHLFE-GTVKDNIEYGPML------------------------------------------K-GEKNVDVEYYLSI 117 (241)
T ss_pred EecCchhch-hhHHHHHhcchhh------------------------------------------c-CcHHHHHHHHHHH
Confidence 999987764 6998887421100 0 0012346677888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|||+||||++++..
T Consensus 118 ~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~ 197 (241)
T PRK14250 118 VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR 197 (241)
T ss_pred cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHH
Confidence 89864566888999999999999999999999999999999999999999999887753 48999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++.. .|...++
T Consensus 198 ~~d~i~~l~~G~i~~-~~~~~~~ 219 (241)
T PRK14250 198 IGDYTAFLNKGILVE-YAKTYDF 219 (241)
T ss_pred hCCEEEEEeCCEEEE-eCCHHHH
Confidence 999999999999854 3444433
No 120
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-43 Score=346.94 Aligned_cols=199 Identities=24% Similarity=0.446 Sum_probs=169.5
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
++|+++||++.|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 46999999999964 579999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++..|+.+|+..... + ........+.
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~ 124 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLL---------------I------------------------GKKKPAEINS 124 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHH---------------h------------------------cCCCHHHHHH
Confidence 249999999988888899999853210 0 0001112345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiis 313 (554)
++.++++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|||+||
T Consensus 125 ~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 125 RALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 677889999996 456788999999999999999999999999999999999999999999888753 488999999
Q ss_pred cCHHHHHhhcceEEEeeCCeee
Q 008771 314 HDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||++++.. +|++++|++|++.
T Consensus 204 H~~~~~~~-~~~~~~l~~G~i~ 224 (233)
T PRK11629 204 HDLQLAKR-MSRQLEMRDGRLT 224 (233)
T ss_pred CCHHHHHh-hCEEEEEECCEEE
Confidence 99999987 5799999999874
No 121
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-43 Score=361.78 Aligned_cols=214 Identities=16% Similarity=0.246 Sum_probs=177.6
Q ss_pred CCCccEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------
Q 008771 93 SISSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------- 160 (554)
...++|+++|++|.|++ .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 34467999999999964 369999999999999999999999999999999999999999999998621
Q ss_pred -------------------ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 008771 161 -------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220 (554)
Q Consensus 161 -------------------~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (554)
..|+||+|++. ..+..||.+|+..+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~-------------------------------- 144 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA-------------------------------- 144 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh--------------------------------
Confidence 14899999974 23456999998532100
Q ss_pred HHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH
Q 008771 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300 (554)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 300 (554)
..........++.++++.+|++....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+
T Consensus 145 -------~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~ 217 (320)
T PRK13631 145 -------LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217 (320)
T ss_pred -------cCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 0011122345677889999996556788999999999999999999999999999999999999999999988
Q ss_pred HHc---cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 301 YLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 301 ~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.|+ +.|.|||+||||++++..+||+|++|++|++. ..|+..++..
T Consensus 218 ~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~~ 265 (320)
T PRK13631 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL-KTGTPYEIFT 265 (320)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 874 35899999999999999999999999999974 5677766544
No 122
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-43 Score=358.56 Aligned_cols=210 Identities=24% Similarity=0.381 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
.|+++||+++|++ +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3899999999963 3699999999999999999999999999999999999999999999987431
Q ss_pred ----eEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 162 ----KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 162 ----~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
.|||+||++. .++..||.+|+...... ..+......
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~---------------------------------------~~~~~~~~~ 122 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKN---------------------------------------FKMNLDEVK 122 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHH---------------------------------------cCCCHHHHH
Confidence 5899999973 23445999988532100 001122344
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii 312 (554)
.++.++++.+|+.....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+++++ .|.|||+|
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~v 202 (286)
T PRK13646 123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV 202 (286)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 56788899999964567889999999999999999999999999999999999999999999888753 48999999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|||++++.++||+|++|++|++. +.|+..++..
T Consensus 203 tH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 235 (286)
T PRK13646 203 SHDMNEVARYADEVIVMKEGSIV-SQTSPKELFK 235 (286)
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999974 5677666543
No 123
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.4e-43 Score=345.33 Aligned_cols=203 Identities=25% Similarity=0.397 Sum_probs=168.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (554)
|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 578999999998899999999999999999999999999999999999999999999998732 249999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..|+.+|+....... .......++.++++.+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~~ 119 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYAR-----------------------------------------RRAKRKARLERVYELF 119 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhc-----------------------------------------CchhHHHHHHHHHHHH
Confidence 99998888889999985321100 0001122334445555
Q ss_pred -CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 247 -GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 -gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||++|||++++..+
T Consensus 120 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 120 PRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred Hhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 343 345788899999999999999999999999999999999999999999888753 578999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~ 343 (554)
||+|++|++|++. ..|+..+
T Consensus 199 ~d~i~~l~~G~i~-~~~~~~~ 218 (222)
T cd03224 199 ADRAYVLERGRVV-LEGTAAE 218 (222)
T ss_pred ccEEEEeeCCeEE-EeCCHHH
Confidence 9999999999874 4555443
No 124
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.5e-43 Score=344.72 Aligned_cols=199 Identities=31% Similarity=0.495 Sum_probs=166.4
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEecccccc
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS 173 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~~ 173 (554)
+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++.++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 36899999988889999999999999999999999999999999999999999999999854 3599999998763
Q ss_pred --cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 174 --MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 174 --~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+..||.+|+........ . .. .........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~~~~--------------~------~~---------------~~~~~~~~~~~~~~l~~~~l~-~ 124 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHK--------------G------LF---------------RRLSKADKAKVDEALERVGLS-E 124 (213)
T ss_pred cCCCCcHHHHHHhcccccc--------------c------cc---------------cCCCHHHHHHHHHHHHHcCCH-H
Confidence 34799999854211000 0 00 000012234677888999986 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||++++.++||+|++
T Consensus 125 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 67889999999999999999999999999999999999999999999888753 578999999999999999999999
Q ss_pred eeCCe
Q 008771 329 TEMGV 333 (554)
Q Consensus 329 l~~g~ 333 (554)
|++|.
T Consensus 205 l~~~~ 209 (213)
T cd03235 205 LNRTV 209 (213)
T ss_pred EcCcE
Confidence 98874
No 125
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.5e-43 Score=348.02 Aligned_cols=216 Identities=29% Similarity=0.428 Sum_probs=178.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (554)
+|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 5899999999988889999999999999999999999999999999999999999999998753 14999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..||.+|+......... ....+ ........+.++.++++.
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~--------------------~~~~~-----------~~~~~~~~~~~~~~~l~~ 130 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKS--------------------VFASL-----------FFRLSAEEKDRIEEVLET 130 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccc--------------------ccccc-----------ccccHHHHHHHHHHHHHH
Confidence 99999988889999998542110000 00000 000001234567888999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~ 323 (554)
+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++.++|
T Consensus 131 ~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 131 IGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA 209 (242)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 9996 456888999999999999999999999999999999999999999999988764 3689999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+|++|++|++. ..|+++++.
T Consensus 210 d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 210 DKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred CEEEEEECCeEE-eeCCHHHHh
Confidence 999999999974 567766653
No 126
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=349.44 Aligned_cols=209 Identities=26% Similarity=0.433 Sum_probs=176.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (554)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 5899999999998899999999999999999999999999999999999999999999998732 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..||.+|+..... +.. .........++.++++.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~---------------~~~-----------------------~~~~~~~~~~~~~~l~~ 124 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQ---------------IRD-----------------------DLSAEQREDRANELMEE 124 (241)
T ss_pred eccCCcccccCcHHHHHhhhhh---------------ccc-----------------------ccCHHHHHHHHHHHHHH
Confidence 9999988888899999853210 000 00111234557778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~ 322 (554)
+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.++ +.|.|+|++|||++++..+
T Consensus 125 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 125 FHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV 203 (241)
T ss_pred cCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 8986 35678899999999999999999999999999999999999999988877664 4589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. +.|+++++.
T Consensus 204 ~d~v~~l~~G~i~-~~~~~~~~~ 225 (241)
T PRK10895 204 CERAYIVSQGHLI-AHGTPTEIL 225 (241)
T ss_pred cCEEEEEeCCeEE-eeCCHHHHh
Confidence 9999999999974 567776654
No 127
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2e-43 Score=347.20 Aligned_cols=202 Identities=23% Similarity=0.379 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC-----CCCceeEEEcCCC------------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN------------ 160 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~~~~------------ 160 (554)
|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|++ +|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999889999999999999999999999999999999999999 9999999998743
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..|+|++|++.++ ..||.+|+...... .. ....+..++++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~~ 121 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRL---------------HG-----------------------IKLKEELDERVE 121 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHh---------------cC-----------------------CCcHHHHHHHHH
Confidence 2489999998876 78999998532100 00 000011345677
Q ss_pred HHhhhcCCCccccCCC--CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCH
Q 008771 241 KLMPELGFTADDGDRL--VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDR 316 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~--~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiisHd~ 316 (554)
++++.+|+.. ..++. +.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++. ..|||+||||+
T Consensus 122 ~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 122 EALRKAALWD-EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHHcCCCh-HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 8889999864 33444 5999999999999999999999999999999999999999999887542 27999999999
Q ss_pred HHHHhhcceEEEeeCCeeeeccCC
Q 008771 317 AFLDQLCTKIVETEMGVSRTYEGN 340 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~~~G~ 340 (554)
+++..+||+|++|++|++. +.|+
T Consensus 201 ~~~~~~~d~i~~l~~G~i~-~~g~ 223 (227)
T cd03260 201 QQAARVADRTAFLLNGRLV-EFGP 223 (227)
T ss_pred HHHHHhCCEEEEEeCCEEE-EecC
Confidence 9999999999999999874 3344
No 128
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.2e-43 Score=345.82 Aligned_cols=201 Identities=26% Similarity=0.420 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCe----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999765 79999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH-H
Q 008771 161 -MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL-D 236 (554)
Q Consensus 161 -~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 236 (554)
..++|++|++ .+++..||.+|+....... . . ...... .
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~---------------~-~----------------------~~~~~~~~ 122 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH---------------G-K----------------------LSKKEARK 122 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhc---------------c-C----------------------CcHHHHHH
Confidence 2599999998 3556789999975321000 0 0 000001 1
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii 312 (554)
..+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||+|
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 202 (228)
T cd03257 123 EAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI 202 (228)
T ss_pred HHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 11246778888854466888999999999999999999999999999999999999999999888753 38899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeee
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
|||++++..+||+|++|++|++.
T Consensus 203 sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 203 THDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred eCCHHHHHHhcCeEEEEeCCEEE
Confidence 99999999999999999999874
No 129
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.3e-43 Score=348.61 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-----ceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~~~~----------- 160 (554)
+|+++||+++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 478999999999888999999999999999999999999999999999999998 9999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|+||++.+++ .|+.+|+...... .. .........++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~ 121 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRL---------------HG-----------------------IKDKKELDEIV 121 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 24999999998877 8999998532100 00 00111234567
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 77888899862 356788999999999999999999999999999999999999999999888754 2589999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. ..|+.+++
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (247)
T TIGR00972 202 NMQQAARISDRTAFFYDGELV-EYGPTEQI 230 (247)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999974 45665554
No 130
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.3e-43 Score=379.01 Aligned_cols=209 Identities=38% Similarity=0.641 Sum_probs=188.5
Q ss_pred CCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 93 SISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
..+..++++|+++.|++ +++++++||.|.+|+++|||||||+|||||||+|+|...|.+|+|.+. ...+|||++|+..
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~igyf~Q~~~ 395 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIGYFDQHRD 395 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEEEEEehhh
Confidence 45678999999999965 689999999999999999999999999999999999999999999986 5589999999973
Q ss_pred -cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 172 -VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 172 -~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
+....|+.+++...+ ....+..++.+|..|+|+.
T Consensus 396 ~l~~~~t~~d~l~~~~---------------------------------------------~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 396 ELDPDKTVLEELSEGF---------------------------------------------PDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred hcCccCcHHHHHHhhC---------------------------------------------ccccHHHHHHHHHHcCCCh
Confidence 345668887765321 0112567888999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEee
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+...+++..||||||.|++||+.++.+|+||||||||||||.++++.|.+.|.++.+|||+||||++|++.+|++|++++
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~ 510 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE 510 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccCChhHHHHHH
Q 008771 331 MGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 331 ~g~~~~~~G~~~~~~~~~ 348 (554)
+ .+..|.|+|++|.+.+
T Consensus 511 ~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 511 D-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred C-ceeEcCCCHHHHHHhh
Confidence 9 8889999999998754
No 131
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-43 Score=350.75 Aligned_cols=208 Identities=28% Similarity=0.391 Sum_probs=175.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v 166 (554)
+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4899999999998889999999999999999999999999999999999999999999998743 248999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..||.+|+....... ....+....++.++++.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 122 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPH---------------------------------------GLSRAEDDALVAAALAQV 122 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhccc---------------------------------------CCCcHHHHHHHHHHHHHc
Confidence 99998878889999975321000 000112234567788889
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHc------cCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCH
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~ 316 (554)
|+. ...++.+.+|||||||||+||+||+ .+|++|||||||++||+.++..+.++|+ +.+.|||+||||+
T Consensus 123 ~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 123 DLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 986 4568899999999999999999999 5999999999999999999988887764 3578999999999
Q ss_pred HHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+++..+||+|++|++|++. +.|+++++.
T Consensus 202 ~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (258)
T PRK13548 202 NLAARYADRIVLLHQGRLV-ADGTPAEVL 229 (258)
T ss_pred HHHHHhcCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999999999874 556665543
No 132
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-43 Score=368.49 Aligned_cols=204 Identities=24% Similarity=0.325 Sum_probs=169.5
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEEE
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFL 166 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~v 166 (554)
.++.+.|+...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+|+
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv 111 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMV 111 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEE
Confidence 333333333348999999999999999999999999999999999999999999998743 259999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..||.+|+...... .........+++.++++.+
T Consensus 112 ~Q~~~l~~~~Tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~e~L~~~ 152 (400)
T PRK10070 112 FQSFALMPHMTVLDNTAFGMEL---------------------------------------AGINAEERREKALDALRQV 152 (400)
T ss_pred ECCCcCCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999998899999998532100 0011122345678889999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~ 322 (554)
||. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .++|||+||||++++..+
T Consensus 153 gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 153 GLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred CCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 996 467899999999999999999999999999999999999999999999887742 589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. ..|+..++.
T Consensus 232 ~Dri~vL~~G~i~-~~g~~~~l~ 253 (400)
T PRK10070 232 GDRIAIMQNGEVV-QVGTPDEIL 253 (400)
T ss_pred CCEEEEEECCEEE-ecCCHHHHH
Confidence 9999999999874 556665554
No 133
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.2e-43 Score=352.13 Aligned_cols=209 Identities=24% Similarity=0.453 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeC---------CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------
Q 008771 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~---------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------- 160 (554)
+|+++||+++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 489999999995 3679999999999999999999999999999999999999999999998742
Q ss_pred ------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
..|+|++|++. +++..||.+|+....... ..+..
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--------------------------------------~~~~~ 123 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--------------------------------------TSLDE 123 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--------------------------------------cCCCH
Confidence 14999999973 456789999875321000 00111
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCe
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~t 308 (554)
.....++.++++.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|
T Consensus 124 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 124 SEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 123456778889999964566889999999999999999999999999999999999999998888887643 4899
Q ss_pred EEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||+||||++++..+||+|++|++|++. ..|+.+++
T Consensus 204 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (265)
T TIGR02769 204 YLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQL 238 (265)
T ss_pred EEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHH
Confidence 999999999999999999999999874 56766554
No 134
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.1e-43 Score=347.21 Aligned_cols=213 Identities=24% Similarity=0.319 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEcCCC-----------ceEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~~~~-----------~~i~ 164 (554)
|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999999889999999999999999999999999999999999995 7999999998742 2389
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..|+.+++......... ... . .........+++.++++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~-----------~~~--~-------------------~~~~~~~~~~~~~~~l~ 128 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRS-----------ARG--E-------------------EPLDLLDFLKLLKAKLA 128 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhc-----------ccc--c-------------------ccccHHHHHHHHHHHHH
Confidence 999999988889999987532110000 000 0 00011123456788899
Q ss_pred hcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
.+|++....++++. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||++++.
T Consensus 129 ~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN 208 (243)
T ss_pred HcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH
Confidence 99997555677776 5999999999999999999999999999999999999999988754 4789999999999999
Q ss_pred hh-cceEEEeeCCeeeeccCChhH
Q 008771 321 QL-CTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 321 ~~-~d~i~~l~~g~~~~~~G~~~~ 343 (554)
.+ ||+|++|++|++ .+.|++++
T Consensus 209 ~~~~d~i~~l~~G~i-~~~g~~~~ 231 (243)
T TIGR01978 209 YIKPDYVHVLLDGRI-VKSGDVEL 231 (243)
T ss_pred hhcCCeEEEEeCCEE-EEecCHHH
Confidence 98 899999999987 45676654
No 135
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.8e-43 Score=349.61 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----c---------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----M--------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~--------- 161 (554)
++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 46999999999988889999999999999999999999999999999999999999999998854 1
Q ss_pred -----eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 162 -----KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 162 -----~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
.++|++|++. +++..|+.+|+...+... . ......
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~---------------~-----------------------~~~~~~ 126 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV---------------G-----------------------ARHYGD 126 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHh---------------c-----------------------cCcHHH
Confidence 4899999974 445678888774321000 0 000012
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvI 310 (554)
...++.++++.+|+.....++.+.+|||||+|||+|||||+.+|++|||||||++||+.+..++.+.++ ++|.|||
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 127 IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 244567788889986446688999999999999999999999999999999999999999999988764 2489999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||||++++..+||+|++|++|++. +.|..+++
T Consensus 207 ~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~ 239 (258)
T PRK11701 207 IVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQV 239 (258)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999974 56665544
No 136
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=8.1e-44 Score=322.31 Aligned_cols=209 Identities=23% Similarity=0.364 Sum_probs=178.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q 168 (554)
+|.+++|+++|+..+ =.++++|+.||++||+||||||||||+++|+|++.|.+|+|.++|.+. -|+++||
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 367899999998654 236899999999999999999999999999999999999999998653 4999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
+.++|..+||.+|+..+....+.. ...-.++++.++..+|+
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL---------------------------------------~a~~r~~v~~aa~~vGl 119 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKL---------------------------------------NAEQREKVEAAAAQVGL 119 (231)
T ss_pred ccccchhhhhhhhhcccCCccccc---------------------------------------CHHHHHHHHHHHHHhCh
Confidence 999999999999997654321110 01234578888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d 324 (554)
. .+.+|.|.+|||||||||+|||+|+.+-+||+||||+++|||.-+..+..++ .+.+.|++||||.++.+.++++
T Consensus 120 ~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~ 198 (231)
T COG3840 120 A-GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIAD 198 (231)
T ss_pred h-hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhh
Confidence 6 5779999999999999999999999999999999999999998877766554 4579999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~~~ 348 (554)
+++++++|++ .+.|..++++..+
T Consensus 199 ~~~fl~~Gri-~~~g~~~~~~~~~ 221 (231)
T COG3840 199 RVVFLDNGRI-AAQGSTQELLSGK 221 (231)
T ss_pred ceEEEeCCEE-EeeccHHHHhccC
Confidence 9999999997 6788877776654
No 137
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=5.7e-43 Score=349.40 Aligned_cols=208 Identities=25% Similarity=0.424 Sum_probs=176.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------------- 160 (554)
|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 578999999998899999999999999999999999999999999999999999999988742
Q ss_pred ------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 ------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 ------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
..|+|++|++.+++..|+.+|+....... . ......
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---------------~-----------------------~~~~~~ 122 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---------------L-----------------------GMARAE 122 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---------------c-----------------------CCCHHH
Confidence 24999999998888899999985321000 0 001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
....+.++++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .|.|+|
T Consensus 123 ~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 123 AEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred HHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 334567788889986 456888999999999999999999999999999999999999999999887753 489999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||||++++..+||++++|++|++. ..|++.++.
T Consensus 202 ivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999974 567776654
No 138
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=388.21 Aligned_cols=207 Identities=30% Similarity=0.499 Sum_probs=180.0
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc--
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-- 171 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~-- 171 (554)
...+|+++||++.|+++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++ ...|||++|+..
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q~~~~~ 387 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEF 387 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecCcchhh
Confidence 45679999999999988999999999999999999999999999999999999999999999863 357999999752
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+....|+.+++... .....+..+..+|..+||...
T Consensus 388 l~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~L~~~~l~~~ 422 (638)
T PRK10636 388 LRADESPLQHLARL---------------------------------------------APQELEQKLRDYLGGFGFQGD 422 (638)
T ss_pred CCccchHHHHHHHh---------------------------------------------CchhhHHHHHHHHHHcCCChh
Confidence 33344555443100 001123457788999999765
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
..++++.+|||||||||+||++|+.+|+||||||||||||+.++..|.++|+++++|||+||||++++..+||+|++|++
T Consensus 423 ~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHD 502 (638)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CeeeeccCChhHHHH
Q 008771 332 GVSRTYEGNYSQYVL 346 (554)
Q Consensus 332 g~~~~~~G~~~~~~~ 346 (554)
|++..|.|+|++|..
T Consensus 503 G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 503 GKVEPFDGDLEDYQQ 517 (638)
T ss_pred CEEEEcCCCHHHHHH
Confidence 999889999999964
No 139
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.1e-43 Score=390.81 Aligned_cols=256 Identities=23% Similarity=0.369 Sum_probs=187.6
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe--eeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV--TVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~--~~l~~isl~i~~Ge~ 125 (554)
+++....++++++.+...+..+++.+.+....+. ........+.|+++||+|+|+.. ++|+|+||+|++||+
T Consensus 428 ~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~------~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~ 501 (709)
T COG2274 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT------LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEK 501 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc------cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCE
Confidence 3444444444555555555556666666433221 11222455679999999999754 699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||||+||||||||+|+|+|+++|++|+|.+||.+. .||||+|++.+ ++.|++||+..+..+..
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-f~gSI~eNi~l~~p~~~----- 575 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL-FSGSIRENIALGNPEAT----- 575 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh-hcCcHHHHHhcCCCCCC-----
Confidence 999999999999999999999999999999999763 59999999877 67799999975421100
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++ ...+.. ..+.+.+..+- +|++... ...-..||||||||++|||||+
T Consensus 576 ~e~i------------------------~~A~~~---ag~~~fI~~lP--~gy~t~v-~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 576 DEEI------------------------IEAAQL---AGAHEFIENLP--MGYDTPV-GEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred HHHH------------------------HHHHHH---hCcHHHHHhcc--ccccccc-ccCCCCCCHHHHHHHHHHHHhc
Confidence 0000 000000 01111111111 1222211 2223689999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.+|+|||||||||+||+.+.+.+.+.|.+ .|+|+|+|||++..+. .||+|++|++|++ .-.|+.++.+..
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gki-v~~gs~~ell~~ 697 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKI-VEQGSHEELLAQ 697 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCce-eccCCHHHHHHh
Confidence 99999999999999999999999999876 4699999999999996 5999999999998 567888877665
No 140
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=6.4e-43 Score=351.82 Aligned_cols=212 Identities=17% Similarity=0.374 Sum_probs=175.1
Q ss_pred ccEEEEeEEEEeCC---------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------
Q 008771 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------ 160 (554)
++|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999962 469999999999999999999999999999999999999999999998742
Q ss_pred ----ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 ----~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
..|+|+||++. +++..|+.+++....... ..+....
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--------------------------------------~~~~~~~ 124 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN--------------------------------------TDLEPEQ 124 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc--------------------------------------cCCCHHH
Confidence 25999999975 445668887764321000 0001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
..+.+.++++.+|+.....++.+.+|||||+|||+||+||+.+|+||||||||++||+.+++.+.+.|.+ .|.|||
T Consensus 125 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 204 (267)
T PRK15112 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204 (267)
T ss_pred HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 3446778899999965566788899999999999999999999999999999999999999999888754 488999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 205 ivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 205 YVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 9999999999999999999999974 5677665543
No 141
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=346.77 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------c
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~----------~ 161 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58999999999988899999999999999999999999999999999999974 79999998753 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|++|++.+++..||.+|+...... ... ........+.+.+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~~~~~~ 125 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKL---------------NRL----------------------VKSKKELQERVRW 125 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHh---------------ccc----------------------cCCHHHHHHHHHH
Confidence 599999999888889999998532110 000 0001123345677
Q ss_pred HhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCH
Q 008771 242 LMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (554)
Q Consensus 242 ~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~ 316 (554)
+++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|+||||+
T Consensus 126 ~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 126 ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred HHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 888888753 346888999999999999999999999999999999999999999999988754 378999999999
Q ss_pred HHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+++.++||+|++|++|++ ...|+.+++.
T Consensus 206 ~~~~~~~d~i~~l~~G~i-~~~g~~~~~~ 233 (250)
T PRK14247 206 QQAARISDYVAFLYKGQI-VEWGPTREVF 233 (250)
T ss_pred HHHHHhcCEEEEEECCeE-EEECCHHHHH
Confidence 999999999999999987 4567766553
No 142
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.6e-43 Score=350.93 Aligned_cols=217 Identities=21% Similarity=0.370 Sum_probs=179.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCCc----------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM---------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~~---------- 161 (554)
+++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 35799999999999889999999999999999999999999999999999999986 49999988431
Q ss_pred -----eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 162 -----~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
.++|+||++.+++..||.+|+......... ... ... ........
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~--------------------~~~----------~~~-~~~~~~~~ 130 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP--------------------FWR----------TCF-SWFTREQK 130 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhccccc--------------------chh----------hhc-ccccHHHH
Confidence 489999999888888999998532100000 000 000 00011234
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii 312 (554)
.++.++++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.|.+.|++ .|.|||+|
T Consensus 131 ~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 209 (262)
T PRK09984 131 QRALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209 (262)
T ss_pred HHHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5678889999996 467889999999999999999999999999999999999999999999888753 47899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++ .+.|+++++
T Consensus 210 tH~~~~~~~~~d~i~~l~~g~i-~~~g~~~~~ 240 (262)
T PRK09984 210 LHQVDYALRYCERIVALRQGHV-FYDGSSQQF 240 (262)
T ss_pred eCCHHHHHHhCCEEEEEECCEE-EEeCCHHHh
Confidence 9999999999999999999997 577888765
No 143
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.5e-43 Score=345.34 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=168.0
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (554)
|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 578999999998899999999999999999999999999999999999999999999998732 259999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..|+.+|+....... . ......+.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------------~-~~~~~~~~~~l~~~ 118 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAAL-----------------------------------------P-RRSRKIPDEIYELF 118 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhc-----------------------------------------C-cchHHHHHHHHHHH
Confidence 99998888889999985321100 0 00011223444444
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~ 322 (554)
++-....++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|+|+||||++++..+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 119 PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence 4212345788999999999999999999999999999999999999999999888753 378999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~ 343 (554)
||+|+++++|++. ..|+.++
T Consensus 199 ~d~v~~l~~g~i~-~~~~~~~ 218 (230)
T TIGR03410 199 ADRYYVMERGRVV-ASGAGDE 218 (230)
T ss_pred CCEEEEEECCEEE-EECCHHH
Confidence 9999999999874 5566554
No 144
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-43 Score=353.47 Aligned_cols=210 Identities=23% Similarity=0.386 Sum_probs=177.1
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------e
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~ 162 (554)
++|+++|++++|+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4699999999996 57899999999999999999999999999999999999999999999988432 4
Q ss_pred EEEEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 163 IAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 163 i~~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|+|+||++.. .+..|+.+|+...... ..........++..
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 124 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------LKLPEDEVRKRVDN 124 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 8999999742 3567999998532100 00111223456778
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~ 317 (554)
+++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .|.|||++|||++
T Consensus 125 ~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 125 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 88999996 467899999999999999999999999999999999999999999988887643 4899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++..+||||++|++|++ .+.|+++++..
T Consensus 204 ~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 231 (283)
T PRK13636 204 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 231 (283)
T ss_pred HHHHhCCEEEEEECCEE-EEeCCHHHHhc
Confidence 99999999999999997 56788776644
No 145
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-43 Score=353.38 Aligned_cols=208 Identities=20% Similarity=0.288 Sum_probs=172.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------eEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~i~ 164 (554)
+|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 48999999999888899999999999999999999999999999999999999999999987532 499
Q ss_pred EEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|++|++.. ++..|+.+|+...... ..........++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN---------------------------------------LGVPEAEITRRVDEAL 121 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 99999753 3455787776421100 0001112234567788
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 122 TLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred HHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888885 456888999999999999999999999999999999999999999999888753 4889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.+||+|++|++|++. +.|+.+++.
T Consensus 201 ~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (271)
T PRK13638 201 EISDAVYVLRQGQIL-THGAPGEVF 224 (271)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999874 566665543
No 146
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=347.22 Aligned_cols=210 Identities=19% Similarity=0.295 Sum_probs=172.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
++.|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.+
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 466999999999988889999999999999999999999999999999999964 689999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .||.+|+...... .. ........+
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~ 124 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRV---------------NG-----------------------VKDKAYLAE 124 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHH---------------cC-----------------------CCCHHHHHH
Confidence 25999999988766 5999998532100 00 000011234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14242 125 RVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIV 204 (253)
T ss_pred HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5666777777742 235788899999999999999999999999999999999999999999988754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++.++||+|++|++|++. ..|..+++
T Consensus 205 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14242 205 THNMQQAARVSDVTAFFYMGKLI-EVGPTEQI 235 (253)
T ss_pred EecHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999874 45665544
No 147
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=358.96 Aligned_cols=210 Identities=24% Similarity=0.343 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC----CCceeEEEcCCCc-------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~----p~~G~I~~~~~~~------- 161 (554)
+|+++||++.|+. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975 479999999999999999999999999999999999997 4899999988542
Q ss_pred -------eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 162 -------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 162 -------~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
.|+||||++. +.+.+|+.+++...+.. ......
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~--------------------------------------~~~~~~ 124 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKV--------------------------------------HQGGNK 124 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHH--------------------------------------hcCCCH
Confidence 4999999983 56778888776432100 000111
Q ss_pred ccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCC
Q 008771 233 DTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g 306 (554)
.+..+++.++|+.+||.. ...++++++|||||+|||+|||||+.+|+||||||||++||+.++..+.++|+ +.|
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 234567888999999964 35688999999999999999999999999999999999999999988888764 358
Q ss_pred CeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 307 ~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.|+|+||||+.++.++||+|++|++|+++ ..|+..+..
T Consensus 205 ~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~~ 242 (326)
T PRK11022 205 MALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDIF 242 (326)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999985 456655443
No 148
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-42 Score=357.99 Aligned_cols=214 Identities=20% Similarity=0.351 Sum_probs=177.0
Q ss_pred CCccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCC------
Q 008771 94 ISSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN------ 160 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~------ 160 (554)
..++|+++||++.|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 345799999999994 357999999999999999999999999999999999999996 9999998853
Q ss_pred --------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhC
Q 008771 161 --------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (554)
Q Consensus 161 --------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (554)
..|+||||++ .+++.+|+.+++...+.. ....
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~--------------------------------------~~~~ 130 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML--------------------------------------HKGM 130 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH--------------------------------------hcCC
Confidence 2599999998 566778998887532100 0001
Q ss_pred CcccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----c
Q 008771 231 NLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (554)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~ 304 (554)
...+...++.++|+.+||+. ...++++++|||||+|||+|||||+.+|++||+||||++||+.++..+.+.|+ +
T Consensus 131 ~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 131 SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 11223456788889999974 23578999999999999999999999999999999999999999998888764 3
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.|.|+|+||||+.++.++||+|++|++|+++ ..|+.+++..
T Consensus 211 ~g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~~i~~ 251 (330)
T PRK09473 211 FNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNARDVFY 251 (330)
T ss_pred cCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 4899999999999999999999999999984 5577665543
No 149
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-42 Score=382.81 Aligned_cols=214 Identities=34% Similarity=0.534 Sum_probs=184.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc-ccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~-~~~ 173 (554)
.++|+++|+++.|+++.+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ ....|||+||++ .++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 400 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEEeCchhhcC
Confidence 457999999999998899999999999999999999999999999999999999999999985 456799999997 566
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+|+...... ......+..+..+++.+|+.....
T Consensus 401 ~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~~ 439 (556)
T PRK11819 401 PNKTVWEEISGGLDI-----------------------------------------IKVGNREIPSRAYVGRFNFKGGDQ 439 (556)
T ss_pred CCCCHHHHHHhhccc-----------------------------------------ccccccHHHHHHHHHhCCCChhHh
Confidence 788999987532100 000000123446788899965456
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC-C
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~-g 332 (554)
++++.+|||||||||+||+||+.+|++|||||||+|||+.++.+|.++|++.+.|||+||||++++..+||+|++|++ |
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g 519 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDS 519 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCC
Confidence 899999999999999999999999999999999999999999999999988767999999999999999999999985 7
Q ss_pred eeeeccCChhHHHHHHHH
Q 008771 333 VSRTYEGNYSQYVLEKAA 350 (554)
Q Consensus 333 ~~~~~~G~~~~~~~~~~~ 350 (554)
.+..|.|+|++|...+++
T Consensus 520 ~~~~~~g~~~~~~~~~~~ 537 (556)
T PRK11819 520 QVEWFEGNFQEYEEDKKR 537 (556)
T ss_pred eEEEecCCHHHHHHHHHH
Confidence 888899999998876543
No 150
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=348.05 Aligned_cols=223 Identities=21% Similarity=0.386 Sum_probs=177.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
.+|+++|+++.|+++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 36999999999998899999999999999999999999999999999999999999999998743 2489
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+++..||.+|+........ +.+........ ... ..........+.++++
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~------------------~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~l~ 139 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQL------------------KTGLFSGLLKT-PAF-----RRAESEALDRAATWLE 139 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccc------------------cchhhhhhccc-ccc-----ccchhHHHHHHHHHHH
Confidence 99999998888999999864311000 00000000000 000 0000112345777888
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~-~g~tvIiisHd~~~l~ 320 (554)
.+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++..+.+.|. + .+.|||+||||++++.
T Consensus 140 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 140 RVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred hCChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 99985 46789999999999999999999999999999999999999999999988874 2 3889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.+||+|++|++|++. +.|+.+++
T Consensus 219 ~~~d~i~~l~~g~i~-~~~~~~~~ 241 (255)
T PRK11300 219 GISDRIYVVNQGTPL-ANGTPEEI 241 (255)
T ss_pred HhCCEEEEEECCeEE-ecCCHHHH
Confidence 999999999999974 56665544
No 151
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=348.05 Aligned_cols=211 Identities=27% Similarity=0.354 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v 166 (554)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 5899999999998899999999999999999999999999999999999999999999998743 149999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..|+.+|+......... .. .........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~--------------------~~---------------~~~~~~~~~~~~~~l~~~ 126 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLS--------------------LW---------------GRLSAEDNARVNQAMEQT 126 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhh--------------------hc---------------cCCCHHHHHHHHHHHHHc
Confidence 9998877778999987532100000 00 000112234567788888
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||++|||++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~ 205 (255)
T PRK11231 127 RIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC 205 (255)
T ss_pred CCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc
Confidence 985 456889999999999999999999999999999999999999999999888753 4889999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++. +.|+++++
T Consensus 206 d~i~~l~~G~i~-~~~~~~~~ 225 (255)
T PRK11231 206 DHLVVLANGHVM-AQGTPEEV 225 (255)
T ss_pred CEEEEEECCeEE-EEcCHHHh
Confidence 999999999874 55666554
No 152
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=8.2e-43 Score=362.52 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=173.3
Q ss_pred EEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEEEeccc
Q 008771 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEF 170 (554)
Q Consensus 105 ~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~v~Q~~ 170 (554)
|.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+||||++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46888899999999999999999999999999999999999999999999998842 2599999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++.+||.+|+...... ......+..+++.++++.+||.
T Consensus 81 ~l~~~~TV~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~vgL~- 120 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL---------------------------------------LGWPEQERKEKALELLKLVGLE- 120 (363)
T ss_pred cCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhcCCc-
Confidence 999999999998642100 0111223456788899999996
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. +.++|||+||||++++..+||+|
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 57799999999999999999999999999999999999999999999988764 34899999999999999999999
Q ss_pred EEeeCCeeeeccCChhHHHH
Q 008771 327 VETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 327 ~~l~~g~~~~~~G~~~~~~~ 346 (554)
++|++|++ ...|...++..
T Consensus 201 ~vl~~G~i-v~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEI-VQVGTPDEILR 219 (363)
T ss_pred EEEeCCEE-EeeCCHHHHHh
Confidence 99999987 45677666554
No 153
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=345.98 Aligned_cols=211 Identities=20% Similarity=0.248 Sum_probs=173.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~---------- 160 (554)
.+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 468999999999888899999999999999999999999999999999999987 49999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.+++..||.+|+...... ... .........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~~~ 125 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKL---------------NGL----------------------VKSKKELDER 125 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHh---------------cCc----------------------cCCHHHHHHH
Confidence 2489999999888888999998532100 000 0001122334
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 205 (253)
T PRK14267 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT 205 (253)
T ss_pred HHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 566777777642 245788999999999999999999999999999999999999999999888754 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++..+||+|++|++|++. ..|+..++
T Consensus 206 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (253)
T PRK14267 206 HSPAQAARVSDYVAFLYLGKLI-EVGPTRKV 235 (253)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55665544
No 154
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=352.29 Aligned_cols=208 Identities=23% Similarity=0.324 Sum_probs=172.2
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
.|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 3899999999974 369999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..|+|++|++. .++..||.+|+...... .....+...
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~ 122 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQN---------------------------------------FGVSQEEAE 122 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHH---------------------------------------cCCCHHHHH
Confidence 24899999973 23446999987532100 000112233
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiis 313 (554)
.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 202 (280)
T PRK13649 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202 (280)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45677888899864456889999999999999999999999999999999999999999999888753 488999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++..+||+|++|++|++. +.|..+++
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (280)
T PRK13649 203 HLMDDVANYADFVYVLEKGKLV-LSGKPKDI 232 (280)
T ss_pred ccHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999875 44665544
No 155
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=349.81 Aligned_cols=212 Identities=25% Similarity=0.376 Sum_probs=176.0
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
.+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 469999999999988999999999999999999999999999999999999999999999987432 4999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..|+.+|+....... ... . .......+.++..+++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~--------------~~~------~---------------~~~~~~~~~~~~~~l~~ 134 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPW--------------HGA------L---------------GRFGAADREKVEEAISL 134 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccc--------------ccc------c---------------cCCCHHHHHHHHHHHHH
Confidence 999988878889999975321000 000 0 00001123456778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
+|+. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|.+ .|.|||+||||++++.+
T Consensus 135 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 135 VGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR 213 (265)
T ss_pred cCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9986 467889999999999999999999999999999999999999999888887642 48999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++. ..|..+++
T Consensus 214 ~~d~i~~l~~G~i~-~~~~~~~~ 235 (265)
T PRK10575 214 YCDYLVALRGGEMI-AQGTPAEL 235 (265)
T ss_pred hCCEEEEEECCeEE-EecCHHHh
Confidence 99999999999974 55655443
No 156
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-43 Score=352.33 Aligned_cols=206 Identities=27% Similarity=0.345 Sum_probs=174.5
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEE
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIA 164 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~ 164 (554)
.++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 56799999999999999999999999999999999999999999999999999999998732 2599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+...... ..........++.++++
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV---------------------------------------QGVPRAEREERAAEALE 146 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999999888889999998532100 00011122345777889
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~ 320 (554)
.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.+ .|.|||++|||++++.
T Consensus 147 ~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 147 LVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99986 456889999999999999999999999999999999999999999999887643 3799999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++||+|++|++|++. ..|+.+++.
T Consensus 226 ~~~d~v~~l~~G~i~-~~g~~~~~~ 249 (269)
T cd03294 226 RLGDRIAIMKDGRLV-QVGTPEEIL 249 (269)
T ss_pred HhcCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999874 456655543
No 157
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=351.95 Aligned_cols=208 Identities=24% Similarity=0.384 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
+|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5899999999963 4699999999999999999999999999999999999999999999988532 58
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. .++..||.+|+...... ..........++.++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 124 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLEN---------------------------------------KGIPHEEMKERVNEA 124 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHh---------------------------------------CCCCHHHHHHHHHHH
Confidence 99999984 56678999998532100 001122334567888
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.+++ .|.|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 125 LELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred HHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999996 567899999999999999999999999999999999999999999998887642 48999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+. .||+|++|++|++. ..|+..++..
T Consensus 204 ~~-~~dri~~l~~G~i~-~~g~~~~~~~ 229 (279)
T PRK13650 204 VA-LSDRVLVMKNGQVE-STSTPRELFS 229 (279)
T ss_pred HH-hCCEEEEEECCEEE-EECCHHHHHc
Confidence 95 79999999999974 4677665443
No 158
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=346.17 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~---------- 160 (554)
++|+++|+++.|+++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 469999999999988899999999999999999999999999999999999975 89999997743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++ .|+.+|+...... . .........+
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~------------------------~~~~~~~~~~ 130 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRI---------------H------------------------GANKKDLDGV 130 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------c------------------------CCCHHHHHHH
Confidence 24999999988766 8999998532100 0 0001122345
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+. ....++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||
T Consensus 131 ~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivs 210 (258)
T PRK14268 131 VENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVT 210 (258)
T ss_pred HHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 66677777773 2345788999999999999999999999999999999999999999999888754 378999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++. +.|...++
T Consensus 211 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 240 (258)
T PRK14268 211 HNMQQAARISDYTGFFLMGELI-EFGQTRQI 240 (258)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55665544
No 159
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=349.16 Aligned_cols=212 Identities=24% Similarity=0.316 Sum_probs=176.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
..|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 45999999999998899999999999999999999999999999999999999999999998753 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++..|+.+|+........ . .. .........++.++++.
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~--------------~------~~---------------~~~~~~~~~~~~~~l~~ 130 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQ--------------P------LF---------------TRWRKEDEEAVTKAMQA 130 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCccccc--------------c------cc---------------cCCCHHHHHHHHHHHHH
Confidence 9999988888899998753210000 0 00 00001123456778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||++|||++++.+
T Consensus 131 ~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~ 209 (265)
T PRK10253 131 TGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR 209 (265)
T ss_pred cCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9986 466899999999999999999999999999999999999999999999887743 48899999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++. +.|...++
T Consensus 210 ~~d~i~~l~~G~i~-~~g~~~~~ 231 (265)
T PRK10253 210 YASHLIALREGKIV-AQGAPKEI 231 (265)
T ss_pred hCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999974 55665543
No 160
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-42 Score=337.87 Aligned_cols=196 Identities=24% Similarity=0.361 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|++++|+++.. |+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 478999999987643 9999999999999999999999999999999999999999998753 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+........ . .....+.++.++++.+|+.
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~--------------------------------------~-~~~~~~~~~~~~l~~~~l~ 119 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGL--------------------------------------K-LTAEDRQAIEVALARVGLA 119 (211)
T ss_pred cccCCCCcHHHHHhccccccc--------------------------------------C-ccHHHHHHHHHHHHHcCCH
Confidence 988888899999853211000 0 0011234577788899986
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||||++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 120 -GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred -HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 456888999999999999999999999999999999999999999999888753 489999999999999999999
Q ss_pred EEEeeCCeee
Q 008771 326 IVETEMGVSR 335 (554)
Q Consensus 326 i~~l~~g~~~ 335 (554)
|++|++|++.
T Consensus 199 i~~l~~G~i~ 208 (211)
T cd03298 199 VVFLDNGRIA 208 (211)
T ss_pred EEEEECCEEe
Confidence 9999999874
No 161
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=343.64 Aligned_cols=209 Identities=22% Similarity=0.375 Sum_probs=175.7
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-C----CceeEEEcCCC--------
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-P----DSGNVIKAKSN-------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p----~~G~I~~~~~~-------- 160 (554)
++++||+.+|.. ..+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 789999999953 479999999999999999999999999999999999998 4 57999999863
Q ss_pred ------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhC-C
Q 008771 161 ------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV-N 231 (554)
Q Consensus 161 ------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 231 (554)
..|+|+||++ .+.|..||.+.+...+... ... .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--------------------------------------~~~~~ 123 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--------------------------------------GKGLS 123 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--------------------------------------hcchh
Confidence 2699999998 4556778877765432110 001 1
Q ss_pred cccHHHHHHHHhhhcCCCcc--ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cC
Q 008771 232 LDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~ 305 (554)
..+..+++.++|+.+||+.. ..+.+|++|||||+|||.||.||+.+|++||.||||++||+.....+.++|+ +.
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~ 203 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK 203 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 23456788999999999865 6799999999999999999999999999999999999999999888887764 47
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|.|+|+||||+..+.++||||++|..|+++.. |+..++.
T Consensus 204 ~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~~~i~ 242 (316)
T COG0444 204 GTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPVEEIF 242 (316)
T ss_pred CCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCHHHHh
Confidence 99999999999999999999999999998654 5554443
No 162
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=343.90 Aligned_cols=207 Identities=22% Similarity=0.325 Sum_probs=170.2
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 36999999999988889999999999999999999999999999999999999999999998743 2499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+....... ........+.++++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------------~~~~~~~~~~~~l~ 122 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA-----------------------------------------ERDQFQERIKWVYE 122 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc-----------------------------------------ChhHHHHHHHHHHH
Confidence 9999998887889999985421000 00001122333444
Q ss_pred hc-CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 245 EL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~l-gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
.+ ++. +..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+ +.|.|||++|||++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 123 LFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 44 232 23467789999999999999999999999999999999999999999888764 35899999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++||+|++|++|++ .+.|+.++..
T Consensus 202 ~~~d~i~~l~~G~i-~~~~~~~~~~ 225 (237)
T PRK11614 202 KLADRGYVLENGHV-VLEDTGDALL 225 (237)
T ss_pred hhCCEEEEEeCCEE-EeeCCHHHHh
Confidence 99999999999987 4667765543
No 163
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.5e-42 Score=344.98 Aligned_cols=211 Identities=25% Similarity=0.397 Sum_probs=173.5
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------- 160 (554)
++|+++||++.|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 36999999999988889999999999999999999999999999999999999999999998743
Q ss_pred ----ceEEEEeccccc--ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 ----MKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 ----~~i~~v~Q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
..|+|++|++.. .+..|+.+|+...+.. .. ......
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~--------------~~------------------------~~~~~~ 123 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA--------------IG------------------------ARHYGN 123 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHH--------------hc------------------------ccchHH
Confidence 138999999753 3456777776421100 00 000011
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
.+..+.++++.+|+.....++.+..|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|
T Consensus 124 ~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 203 (253)
T TIGR02323 124 IRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203 (253)
T ss_pred HHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2346778889999864567889999999999999999999999999999999999999999999887643 489999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||||++++..+||++++|++|++. ..|...++.
T Consensus 204 ~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~ 237 (253)
T TIGR02323 204 IVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL 237 (253)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999974 556655543
No 164
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=357.85 Aligned_cols=216 Identities=21% Similarity=0.309 Sum_probs=174.5
Q ss_pred ccEEEEeEEEEe----CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC----CCceeEEEcCCCc------
Q 008771 96 SGVKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------ 161 (554)
Q Consensus 96 ~~i~~~~ls~~y----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~----p~~G~I~~~~~~~------ 161 (554)
++|+++||+++| +...+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 368999999999 34679999999999999999999999999999999999996 5899999987431
Q ss_pred --------eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 162 --------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 162 --------~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
.|+||||++. +.+..||.+++...+.... .. +.. ...
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~------------~~---------~~~------------~~~ 128 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWT------------YK---------GRW------------WQR 128 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhh------------cc---------ccc------------ccc
Confidence 5999999986 4567789888753210000 00 000 000
Q ss_pred cccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----C
Q 008771 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~ 305 (554)
......++.++|+.+||.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .
T Consensus 129 ~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 129 FGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 0123456788999999974 346889999999999999999999999999999999999999999998888753 5
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|.||||||||++++.++||+|++|++|+++ ..|+..++.
T Consensus 209 g~tii~itHdl~~v~~~~dri~vm~~G~iv-e~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHDLQMLSQWADKINVLYCGQTV-ETAPSKELV 247 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 899999999999999999999999999984 556655543
No 165
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=349.82 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=176.3
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEE
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~ 164 (554)
.+|+++|++++|+ +..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|... .++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 3589999999996 45799999999999999999999999999999999999999999999987532 499
Q ss_pred EEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|++|++. .++..||.+|+...... .........+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 122 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPIN---------------------------------------LGLDEETVAHRVSSAL 122 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 33567999987522100 0011122344677889
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l 319 (554)
+.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+++++ .|.|||++|||++++
T Consensus 123 ~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 123 HMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999996 567889999999999999999999999999999999999999999999887753 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.++||+|++|++|++ .+.|+.+++..
T Consensus 202 ~~~~drv~~l~~G~i-~~~g~~~~~~~ 227 (277)
T PRK13652 202 PEMADYIYVMDKGRI-VAYGTVEEIFL 227 (277)
T ss_pred HHhCCEEEEEECCeE-EEECCHHHHhc
Confidence 999999999999987 46688776643
No 166
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=345.06 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=171.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~---------- 160 (554)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 469999999999888899999999999999999999999999999999999987 58999998742
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.++ ..||.+|+....... . .......+.+
T Consensus 86 ~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 126 (254)
T PRK14273 86 LRRKIGMVFQTPNPF-LMSIYDNISYGPKIH---------------G-----------------------TKDKKKLDEI 126 (254)
T ss_pred HhhceEEEeeccccc-cCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHHH
Confidence 2499999998876 489999985321000 0 0001122344
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+. .+..++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~s 206 (254)
T PRK14273 127 VEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206 (254)
T ss_pred HHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56666777763 1345788999999999999999999999999999999999999999999888754 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++. ..|...++
T Consensus 207 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 236 (254)
T PRK14273 207 HNMQQAGRISDRTAFFLNGCIE-EESSTDEL 236 (254)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 45665544
No 167
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=345.10 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~~---------- 161 (554)
.|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999988999999999999999999999999999999999999974 799999987432
Q ss_pred --eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 162 --~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
.|+|++|++.+++..||.+|+...... . ........++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~-----------------------~~~~~~~~~~~~ 125 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKL---------------N-----------------------GVRNKKDLDELV 125 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHh---------------c-----------------------CCCCHHHHHHHH
Confidence 499999999888888999998532100 0 000011233456
Q ss_pred HHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+|+. ....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 7778888874 2356788999999999999999999999999999999999999999999888753 3689999999
Q ss_pred CHHHHHhhcceEEEee------CCeeeeccCChhHHH
Q 008771 315 DRAFLDQLCTKIVETE------MGVSRTYEGNYSQYV 345 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~------~g~~~~~~G~~~~~~ 345 (554)
|++++.++||+|++|+ +|++ .+.|+..++.
T Consensus 206 ~~~~~~~~~d~i~~l~~~~~~~~g~i-~~~~~~~~~~ 241 (258)
T PRK14241 206 NMQQAARVSDQTAFFNLEATGKPGRL-VEIDDTEKIF 241 (258)
T ss_pred CHHHHHHhCCEEEEEecccCCCCceE-EecCCHHHHH
Confidence 9999999999999996 6877 4557666553
No 168
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-42 Score=373.24 Aligned_cols=257 Identities=22% Similarity=0.355 Sum_probs=198.6
Q ss_pred HhhHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe---eeEEceeEEEEC
Q 008771 46 TCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKK 122 (554)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~---~~l~~isl~i~~ 122 (554)
...+.....-+..+.++.++.+|+|+..+.++..... .. ..+....+.|+++||+|+|+.+ ++|+|+||+|++
T Consensus 418 g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~---~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~p 493 (716)
T KOG0058|consen 418 GSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-GT---LAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRP 493 (716)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-Cc---cccccccceEEEEEeeeecCCCCCchhhcCceeeeCC
Confidence 3466667777788999999999999998776543221 00 0111356779999999999765 599999999999
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHH----
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE---- 188 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~---- 188 (554)
||++|||||||+||||+..+|..+|.|++|+|.+||.++ +||+|.|+|.+ |+.||.|||..+..+
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNATDE 572 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCCCHH
Confidence 999999999999999999999999999999999999764 59999999988 678999999865431
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (554)
++...++.... ...+.++-+ |.+..- ..+-.+||||||||+
T Consensus 573 ~i~~AAk~ANa------------------------------------h~FI~~~p~--gY~T~V-GEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 573 EIEAAAKMANA------------------------------------HEFITNFPD--GYNTVV-GEKGSQLSGGQKQRI 613 (716)
T ss_pred HHHHHHHHhCh------------------------------------HHHHHhCcc--cccccc-CCccccccchHHHHH
Confidence 11111111111 111111111 222211 223358999999999
Q ss_pred HHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 269 ~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||||||+.||.||||||.||+||.++...+.+.|.+ .+.|||+|.|+++.+.+ ||+|+++++|++. -.|++++.+.
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~ 691 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLS 691 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhh
Confidence 999999999999999999999999999999888853 57999999999999975 9999999999984 5678877665
Q ss_pred HH
Q 008771 347 EK 348 (554)
Q Consensus 347 ~~ 348 (554)
..
T Consensus 692 ~~ 693 (716)
T KOG0058|consen 692 KP 693 (716)
T ss_pred Cc
Confidence 43
No 169
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=352.54 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=171.8
Q ss_pred ccEEEEeEEEEeCCe-----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~-----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------- 160 (554)
..|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 458999999999764 49999999999999999999999999999999999999999999988732
Q ss_pred -----ceEEEEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 -----MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 -----~~i~~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
..|+|++|++.. .+..|+.+|+...... . ......
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~ 125 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN---------------L------------------------GENKQE 125 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH---------------c------------------------CCCHHH
Confidence 148999999742 2346899887532100 0 001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
...++.++++.++++....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||
T Consensus 126 ~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 205 (289)
T PRK13645 126 AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 205 (289)
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2345667888889864567889999999999999999999999999999999999999999999887643 488999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||||++++.++||+|++|++|++. +.|+..++
T Consensus 206 iisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (289)
T PRK13645 206 MVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEI 238 (289)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999974 45665554
No 170
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-43 Score=331.22 Aligned_cols=206 Identities=24% Similarity=0.464 Sum_probs=183.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------eEEEEeccc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------~i~~v~Q~~ 170 (554)
++++++|+++|+++.+++|+||++++|++.|++|+|||||||.+|+|.|+++|++|+|.|+|... +|||+|.+-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998653 699999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++.+||.|.+.... ....++..++..++..+|+.+++.
T Consensus 82 GLy~k~tv~dql~yla---------------------------------------~LkGm~~~e~~~~~~~wLer~~i~- 121 (300)
T COG4152 82 GLYPKMTVEDQLKYLA---------------------------------------ELKGMPKAEIQKKLQAWLERLEIV- 121 (300)
T ss_pred ccCccCcHHHHHHHHH---------------------------------------HhcCCcHHHHHHHHHHHHHhcccc-
Confidence 9999999998764210 112455667788899999999996
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcceEE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
....+++.+||-|++|++.+..+++++|+++|||||+|||||.+.+.|.+.+ ++.|.|||++||.|+-++++||+++
T Consensus 122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 4567889999999999999999999999999999999999999999998875 5689999999999999999999999
Q ss_pred EeeCCeeeeccCChhH
Q 008771 328 ETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 328 ~l~~g~~~~~~G~~~~ 343 (554)
.|+.|..+ ..|+..+
T Consensus 202 mL~kG~~V-~~G~v~~ 216 (300)
T COG4152 202 MLKKGQTV-LYGTVED 216 (300)
T ss_pred eecCCceE-EeccHHH
Confidence 99999874 4566543
No 171
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.4e-42 Score=340.64 Aligned_cols=193 Identities=22% Similarity=0.336 Sum_probs=164.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~ 164 (554)
+++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 346999999999998899999999999999999999999999999999999999999999998743 2589
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++ .|+.+|+..... + ......+.++.++++
T Consensus 85 ~~~q~~~l~~-~tv~enl~~~~~---------------~--------------------------~~~~~~~~~~~~~l~ 122 (225)
T PRK10247 85 YCAQTPTLFG-DTVYDNLIFPWQ---------------I--------------------------RNQQPDPAIFLDDLE 122 (225)
T ss_pred EEeccccccc-ccHHHHHHhHHh---------------h--------------------------cCCChHHHHHHHHHH
Confidence 9999988765 599998753100 0 000011245667888
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~ 320 (554)
.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++++.
T Consensus 123 ~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 123 RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 999864456889999999999999999999999999999999999999999999887653 4889999999999996
Q ss_pred hhcceEEEee
Q 008771 321 QLCTKIVETE 330 (554)
Q Consensus 321 ~~~d~i~~l~ 330 (554)
.||+|++|+
T Consensus 203 -~~d~i~~l~ 211 (225)
T PRK10247 203 -HADKVITLQ 211 (225)
T ss_pred -hCCEEEEEe
Confidence 699999996
No 172
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=345.32 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=173.2
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
...|+++|++++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 355999999999998889999999999999999999999999999999999986 589999998733
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .|+.+|+...... . .........+
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~-----------------------~~~~~~~~~~ 131 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGVRL---------------F-----------------------EKLSRAEMDE 131 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhHhh---------------c-----------------------CCCCHHHHHH
Confidence 24999999987765 7999987532100 0 0001112234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|
T Consensus 132 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 211 (260)
T PRK10744 132 RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIV 211 (260)
T ss_pred HHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5677788888742 345788899999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++..+||+|++|++|++. ..|+.+++.
T Consensus 212 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 243 (260)
T PRK10744 212 THNMQQAARCSDYTAFMYLGELI-EFGNTDTIF 243 (260)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999974 456655543
No 173
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.4e-42 Score=380.25 Aligned_cols=213 Identities=35% Similarity=0.550 Sum_probs=182.8
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc-cc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-VS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~-~~ 173 (554)
.++|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++ ....|||++|++. ++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEeCCccccC
Confidence 457999999999998899999999999999999999999999999999999999999999984 4567999999974 66
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+++...... ......+..+..+++.+|+.....
T Consensus 399 ~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~~ 437 (552)
T TIGR03719 399 PNKTVWEEISGGLDI-----------------------------------------IQLGKREVPSRAYVGRFNFKGSDQ 437 (552)
T ss_pred CCCcHHHHHHhhccc-----------------------------------------cccCcchHHHHHHHHhCCCChhHh
Confidence 778999998542100 000001123456788899865456
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC-C
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~-g 332 (554)
++++.+|||||||||+||+||+.+|++|||||||++||+.++++|.++|++.+.|||+||||++++..+||+|++|++ |
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDS 517 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCC
Confidence 889999999999999999999999999999999999999999999999988777999999999999999999999986 5
Q ss_pred eeeeccCChhHHHHHHH
Q 008771 333 VSRTYEGNYSQYVLEKA 349 (554)
Q Consensus 333 ~~~~~~G~~~~~~~~~~ 349 (554)
++..|.|+|++|...+.
T Consensus 518 ~~~~~~g~~~~~~~~~~ 534 (552)
T TIGR03719 518 HVEWFEGNYSEYEEDKK 534 (552)
T ss_pred eEEEeCCCHHHHHHHHH
Confidence 88789999988866543
No 174
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.4e-42 Score=345.65 Aligned_cols=210 Identities=29% Similarity=0.399 Sum_probs=175.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEe
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLS 167 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~ 167 (554)
|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 6899999999988999999999999999999999999999999999999999999999987431 489999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..||.+|+......... . ..........++.++++.+|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~-----------~------------------------~~~~~~~~~~~~~~~l~~~~ 126 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRS-----------L------------------------WAGDSPHDAAVVDRALARTE 126 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhh-----------h------------------------ccCCCHHHHHHHHHHHHHcC
Confidence 998777788999998542100000 0 00001122346778888899
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d 324 (554)
+. +..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||++|||++++..+||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 127 LS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred cH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 567889999999999999999999999999999999999999999999888753 47899999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHH
Q 008771 325 KIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~ 344 (554)
+|++|++|++. ..|..+++
T Consensus 206 ~i~~l~~G~i~-~~g~~~~~ 224 (256)
T TIGR03873 206 HVVVLDGGRVV-AAGPPREV 224 (256)
T ss_pred EEEEEeCCCEE-EecCHHHh
Confidence 99999999874 55665544
No 175
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=343.18 Aligned_cols=210 Identities=20% Similarity=0.322 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--C---CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~~~~---------- 160 (554)
..|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 45899999999998889999999999999999999999999999999999986 4 69999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|+||++.+++..|+.+|+...+... ........+.+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--------------------------------------~~~~~~~~~~~ 124 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--------------------------------------GRVNRSEADEI 124 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhc--------------------------------------CCCCHHHHHHH
Confidence 14999999998888889999985321100 00001122345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivs 204 (252)
T PRK14256 125 VESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204 (252)
T ss_pred HHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 667777788743 245678899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++. ..|..+++
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14256 205 HNMQQAARVSDYTAFFYMGDLV-ECGETKKI 234 (252)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999874 44655544
No 176
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-42 Score=339.94 Aligned_cols=207 Identities=23% Similarity=0.355 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++||+++|++.. .|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 378999999998644 39999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+...+... . ......+.++.++++.+|+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~-----------------~----------------------~~~~~~~~~~~~~l~~~~l 119 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPG-----------------L----------------------KLNAAQREKLHAIARQMGI 119 (232)
T ss_pred ccccccCCcHHHHHhcccccc-----------------c----------------------CCCHHHHHHHHHHHHHcCc
Confidence 998888889999985321000 0 0001124457788899999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|+|+||||++++.++||
T Consensus 120 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 120 E-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred H-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 6 467899999999999999999999999999999999999999999888887643 48899999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+|++|++|++. +.|+++++..
T Consensus 199 ~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 199 RSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred EEEEEECCEEE-EeCCHHHHHh
Confidence 99999999874 6787776653
No 177
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-42 Score=345.67 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=170.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 457999999999998889999999999999999999999999999999999864 799999998632
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .|+.+|+...+... . .......+.
T Consensus 99 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~ 139 (268)
T PRK14248 99 NLRREIGMVFQKPNPFP-KSIYNNITHALKYA---------------G-----------------------ERRKSVLDE 139 (268)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhc---------------C-----------------------CCcHHHHHH
Confidence 25999999988766 49999985321100 0 000001123
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
.+.+++..+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++
T Consensus 140 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 219 (268)
T PRK14248 140 IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219 (268)
T ss_pred HHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3455566666631 345788999999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++. +.|+.+++
T Consensus 220 tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 250 (268)
T PRK14248 220 THNMQQALRVSDRTAFFLNGDLV-EYDQTEQI 250 (268)
T ss_pred EeCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999874 55665544
No 178
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-43 Score=317.93 Aligned_cols=210 Identities=25% Similarity=0.430 Sum_probs=181.7
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------- 160 (554)
+.|+++|+.++||...+|++|||+-++|+++.|||.+||||||+||||+=+..|+.|.|.++|..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 35899999999999999999999999999999999999999999999999999999999988742
Q ss_pred --------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
.+.|+|||+++++..+||.||+..+...- + ....
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV-----------------------L---------------g~~k 126 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV-----------------------L---------------GVSK 126 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh-----------------------h---------------cCCH
Confidence 14899999999999999999987542110 0 1234
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH---HccCCCeE
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPM 309 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~---l~~~g~tv 309 (554)
.+..+++..+|.++|+. +..+.+|..|||||+||++|||||+.+|+++|+|||||+|||+-.-.+... |.+.|.|+
T Consensus 127 ~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 127 AEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred HHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 45667888999999996 456789999999999999999999999999999999999999987766655 45679999
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++|||.+.|+.+++++|+++++|.+ .-.|+..+..
T Consensus 206 v~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P~qvf 240 (256)
T COG4598 206 VVVTHEMGFARDVSSHVIFLHQGKI-EEEGPPEQVF 240 (256)
T ss_pred EEEeeehhHHHhhhhheEEeeccee-cccCChHHHh
Confidence 9999999999999999999999986 5567665544
No 179
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-42 Score=347.16 Aligned_cols=208 Identities=26% Similarity=0.387 Sum_probs=173.6
Q ss_pred cEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
+|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995 5679999999999999999999999999999999999999999999998743 2499
Q ss_pred EEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|++|++.. ++..|+.+|+...... .........+++.+++
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPEN---------------------------------------LCLPPIEIRKRVDRAL 121 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 99999863 5667999987532100 0011223345677888
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|+ +.|.|||++|||++++.
T Consensus 122 ~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 122 AEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH 200 (274)
T ss_pred HHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 899986 45688999999999999999999999999999999999999999999888774 35899999999999995
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.||+|++|++|++ .+.|+..++..
T Consensus 201 -~~d~v~~l~~G~i-~~~g~~~~~~~ 224 (274)
T PRK13644 201 -DADRIIVMDRGKI-VLEGEPENVLS 224 (274)
T ss_pred -hCCEEEEEECCEE-EEECCHHHHhc
Confidence 6999999999997 46677665543
No 180
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-42 Score=335.48 Aligned_cols=194 Identities=23% Similarity=0.312 Sum_probs=167.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------eEEEEe
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLS 167 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------~i~~v~ 167 (554)
+++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 3569999999999888899999999999999999999999999999999999999999999987532 499999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..|+.+|+..... . .....++.+.+++..+|
T Consensus 89 q~~~~~~~~t~~e~l~~~~~---------------~---------------------------~~~~~~~~~~~~l~~~~ 126 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCG---------------L---------------------------HGRRAKQMPGSALAIVG 126 (214)
T ss_pred cCcccccCCcHHHHHHHHHH---------------h---------------------------cCCcHHHHHHHHHHHcC
Confidence 99888777899998743110 0 00112344567788889
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d 324 (554)
+. ...++++.+|||||||||+|||+|+.+|++|||||||++||+.+++++.++|++ .+.|+|++|||++++.++||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 127 LA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred Ch-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 86 456888999999999999999999999999999999999999999999888753 48999999999999999999
Q ss_pred eEEEeeC
Q 008771 325 KIVETEM 331 (554)
Q Consensus 325 ~i~~l~~ 331 (554)
++++++.
T Consensus 206 ~i~~l~~ 212 (214)
T PRK13543 206 RMLTLEA 212 (214)
T ss_pred eEEEEee
Confidence 9999864
No 181
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-42 Score=341.31 Aligned_cols=210 Identities=18% Similarity=0.275 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC---CCC--CceeEEEcCCCc---------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEP--DSGNVIKAKSNM--------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~---~~p--~~G~I~~~~~~~--------- 161 (554)
++|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.++|.+.
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 468999999999988899999999999999999999999999999999997 455 589999987431
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.|+|+||++.+++ .|+.+|+...+.. .. .......+..
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~~ 122 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRV---------------NG-----------------------VKDNAFIRQR 122 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHH---------------cC-----------------------CCcHHHHHHH
Confidence 4999999988765 5999988532110 00 0000112345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivt 202 (250)
T PRK14245 123 VEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 677788888753 245788999999999999999999999999999999999999999999988754 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++.++||+|++|++|++ .+.|+..++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~~-~~~~~~~~~~ 233 (250)
T PRK14245 203 HNMQQAARVSDKTAFFYMGEM-VEYDDTKKIF 233 (250)
T ss_pred CCHHHHHhhCCEEEEEECCEE-EEECCHHHHh
Confidence 999999999999999999987 4667766554
No 182
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-42 Score=346.62 Aligned_cols=208 Identities=24% Similarity=0.371 Sum_probs=174.1
Q ss_pred cEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------eE
Q 008771 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~i 163 (554)
+|+++||+++|+ +.++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999996 46799999999999999999999999999999999999999999999987432 48
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. .++..||.+|+...... . .........++.++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~----------------~-----------------------~~~~~~~~~~~~~~ 121 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLN----------------L-----------------------GLSKEEVEKRVKEA 121 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHH----------------c-----------------------CCCHHHHHHHHHHH
Confidence 99999974 33557999987532100 0 00111233457788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++
T Consensus 122 l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~ 200 (275)
T PRK13639 122 LKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV 200 (275)
T ss_pred HHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8999996 467899999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
..+||+|++|++|++. ..|+.+++.
T Consensus 201 ~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (275)
T PRK13639 201 PVYADKVYVMSDGKII-KEGTPKEVF 225 (275)
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999874 457766654
No 183
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.1e-42 Score=336.97 Aligned_cols=199 Identities=31% Similarity=0.458 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------ceEEEEecccc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------~~i~~v~Q~~~ 171 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+||++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 478999999998899999999999999999999999999999999999999999999998753 26899999998
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+++..|+.+|+..... . .. ..+.++.++++.+|+. .
T Consensus 81 ~~~~~t~~~~~~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~-~ 116 (223)
T TIGR03740 81 LYENLTARENLKVHTT---------------L--------------------------LG--LPDSRIDEVLNIVDLT-N 116 (223)
T ss_pred ccccCCHHHHHHHHHH---------------H--------------------------cC--CCHHHHHHHHHHcCCc-H
Confidence 8888899998743210 0 00 0123567788889986 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||++|||++++.++||+|++
T Consensus 117 ~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 196 (223)
T TIGR03740 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGI 196 (223)
T ss_pred HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 56888999999999999999999999999999999999999999999888753 478999999999999999999999
Q ss_pred eeCCeeeeccCCh
Q 008771 329 TEMGVSRTYEGNY 341 (554)
Q Consensus 329 l~~g~~~~~~G~~ 341 (554)
|++|++. +.|+.
T Consensus 197 l~~g~i~-~~~~~ 208 (223)
T TIGR03740 197 ISEGVLG-YQGKI 208 (223)
T ss_pred EeCCEEE-EecCh
Confidence 9999874 44543
No 184
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-42 Score=339.68 Aligned_cols=211 Identities=24% Similarity=0.374 Sum_probs=181.4
Q ss_pred ccEEEEeEEEEeCCe------------------------eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc
Q 008771 96 SGVKLENISKSYKGV------------------------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~------------------------~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~ 151 (554)
..|+++|+++-||.+ .-++|+||+|++||+..|.|-||||||||+|+|+++++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 348889999888641 25799999999999999999999999999999999999999
Q ss_pred eeEEEcCCCc--------------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHH
Q 008771 152 GNVIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217 (554)
Q Consensus 152 G~I~~~~~~~--------------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (554)
|+|.++|.++ ++++|||.+.++|..||.+|...++.
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe------------------------------ 132 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE------------------------------ 132 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee------------------------------
Confidence 9999998653 69999999999999999999865431
Q ss_pred HHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHH
Q 008771 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 297 (554)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~ 297 (554)
...++..+.++++.++|+.+||. .+.+++|++|||||||||.|||||+.+|+|||+|||+|+|||--+..
T Consensus 133 ---------v~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 133 ---------VQGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred ---------ecCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 01334556678899999999996 67899999999999999999999999999999999999999976655
Q ss_pred HHH----HHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 298 LEG----YLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 298 l~~----~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+.+ +.++.++||||||||++++.++.|||.+|++|++ +..|...+.+..
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i-vQ~Gtp~eIl~~ 255 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI-VQVGTPEEILLN 255 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE-EEeCCHHHHHcC
Confidence 544 4456799999999999999999999999999997 456766665554
No 185
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=344.03 Aligned_cols=211 Identities=18% Similarity=0.286 Sum_probs=173.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
.+.|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 3469999999999988899999999999999999999999999999999999974 89999998732
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .||.+|+...... .. . .........
T Consensus 97 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~---------------------~~~~~~~~~ 138 (267)
T PRK14235 97 ELRARVGMVFQKPNPFP-KSIYENVAYGPRI---------------HG-L---------------------ARSKAELDE 138 (267)
T ss_pred HHhhceEEEecCCCCCC-CcHHHHHHHHHHh---------------cc-c---------------------ccchHHHHH
Confidence 24899999988766 4999998532100 00 0 000112344
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiiv 218 (267)
T PRK14235 139 IVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIV 218 (267)
T ss_pred HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5677888888853 245778899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++. ..|+.+++
T Consensus 219 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14235 219 THSMQQAARVSQRTAFFHLGNLV-EVGDTEKM 249 (267)
T ss_pred EcCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999874 45665544
No 186
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-42 Score=337.62 Aligned_cols=206 Identities=27% Similarity=0.429 Sum_probs=175.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|.++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 478999999998899999999999999999999999999999999999999999999998743 359999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...+.. ........++++..+++.+|+.
T Consensus 81 ~~~~~~~t~~~nl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~ 121 (232)
T cd03300 81 YALFPHLTVFENIAFGLRL---------------------------------------KKLPKAEIKERVAEALDLVQLE 121 (232)
T ss_pred cccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCCc
Confidence 9887788999987532110 0001112344667788889996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.+++ .|.|||++|||++++.++||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 122 -GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred -hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 567888999999999999999999999999999999999999999999888753 389999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++. +.|+..++
T Consensus 201 i~~l~~G~~~-~~~~~~~~ 218 (232)
T cd03300 201 IAVMNKGKIQ-QIGTPEEI 218 (232)
T ss_pred EEEEECCEEE-ecCCHHHH
Confidence 9999999985 44555443
No 187
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=347.71 Aligned_cols=209 Identities=23% Similarity=0.366 Sum_probs=175.9
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
++|+++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 46999999999974 5699999999999999999999999999999999999999999999988532 59
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. +++..||.+|+...... ..........++.++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 124 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLEN---------------------------------------IGVPREEMVERVDQA 124 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhh---------------------------------------CCCCHHHHHHHHHHH
Confidence 99999984 56678999998532100 000112234567888
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+||. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 125 LRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 9999996 567889999999999999999999999999999999999999999999888753 38999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+. .||+|++|++|++ .+.|+..++..
T Consensus 204 ~~-~~d~i~~l~~G~i-~~~g~~~~~~~ 229 (279)
T PRK13635 204 AA-QADRVIVMNKGEI-LEEGTPEEIFK 229 (279)
T ss_pred HH-cCCEEEEEECCEE-EEECCHHHHhc
Confidence 97 5999999999987 46677665543
No 188
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=338.95 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC---CCceeEEEcCCCc----------eE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~~~~~----------~i 163 (554)
+|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+. .|
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4799999999998889999999999999999999999999999999999974 7999999987532 49
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|+||++.+++ .|+.+|+..... ..... ........++.+++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~---------------~~~~~----------------------~~~~~~~~~~~~~l 123 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPK---------------LHGMI----------------------KNKDEEEALVVDCL 123 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHh---------------hcCcc----------------------cChHHHHHHHHHHH
Confidence 99999998765 699999753210 00000 00112334567788
Q ss_pred hhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 008771 244 PELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (554)
Q Consensus 244 ~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~ 318 (554)
+.+|+.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|+||||+++
T Consensus 124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8888852 345778899999999999999999999999999999999999999999888754 48899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+..+||+|++|++|++. ..|...++
T Consensus 204 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 228 (246)
T PRK14269 204 GKRVADYTAFFHLGELI-EFGESKEF 228 (246)
T ss_pred HHhhCcEEEEEECCEEE-EECCHHHH
Confidence 99999999999999985 45655544
No 189
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-42 Score=356.99 Aligned_cols=198 Identities=26% Similarity=0.411 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ce
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~ 162 (554)
+|++ ||+++|+++.+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 3778 99999987643 8999999999999999999999999999999999999999987732 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|++|++.+++.+||.+|+..... .....++.++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~---------------------------------------------~~~~~~~~~~ 112 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMA---------------------------------------------KSMVAQFDKI 112 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhh---------------------------------------------hhhHHHHHHH
Confidence 9999999999889999999853210 0112356778
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||+++
T Consensus 113 l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 113 VALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 8889996 467899999999999999999999999999999999999999999988887753 48899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+..+||+|++|++|++. ..|+..++
T Consensus 192 ~~~~~d~i~~l~~G~i~-~~g~~~~i 216 (352)
T PRK11144 192 ILRLADRVVVLEQGKVK-AFGPLEEV 216 (352)
T ss_pred HHHhCCEEEEEeCCEEE-EecCHHHH
Confidence 99999999999999974 44655544
No 190
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-42 Score=340.45 Aligned_cols=209 Identities=20% Similarity=0.296 Sum_probs=170.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~---------- 160 (554)
.+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 35899999999998899999999999999999999999999999999999997 489999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.++. .||.+|+...... .. ....+..+.+
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~ 123 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKI---------------AG-----------------------VKDKELIDQR 123 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHH---------------cC-----------------------CCCHHHHHHH
Confidence 24999999987764 7999998532110 00 0000112334
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+. ....++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiis 203 (251)
T PRK14251 124 VEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVT 203 (251)
T ss_pred HHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56667777773 1345778899999999999999999999999999999999999999999888764 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++.. .|..+++
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 204 HNLQQAGRISDQTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred CCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999854 4555443
No 191
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-42 Score=375.69 Aligned_cols=209 Identities=31% Similarity=0.530 Sum_probs=182.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc--c
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE--V 172 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~--~ 172 (554)
..+|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..|||++|++. +
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcccccccC
Confidence 35799999999999888999999999999999999999999999999999999999999999864 57999999974 3
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
+...|+.+++.... .....+.++.++|+.+|+....
T Consensus 396 ~~~~t~~~~~~~~~--------------------------------------------~~~~~~~~~~~~l~~~~l~~~~ 431 (530)
T PRK15064 396 ENDLTLFDWMSQWR--------------------------------------------QEGDDEQAVRGTLGRLLFSQDD 431 (530)
T ss_pred CCCCcHHHHHHHhc--------------------------------------------cCCccHHHHHHHHHHcCCChhH
Confidence 44679988763100 0001234567788999986456
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCC
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g 332 (554)
.++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.+.|++.+.|||+||||++++..+||+|++|++|
T Consensus 432 ~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 432 IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred eeeeccCChhHHHHHH
Q 008771 333 VSRTYEGNYSQYVLEK 348 (554)
Q Consensus 333 ~~~~~~G~~~~~~~~~ 348 (554)
++..+.|++.++...+
T Consensus 512 ~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 512 GVVDFSGTYEEYLRSQ 527 (530)
T ss_pred eEEEcCCCHHHHHHHh
Confidence 9877899998876543
No 192
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=8e-42 Score=340.39 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=166.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccC
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (554)
++|+++||++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..|+|++|++.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-LRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-cCEEEeccccccccc
Confidence 4699999999999888999999999999999999999999999999999999999999999863 469999999876554
Q ss_pred --ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 176 --RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 176 --~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
.|+.+++... ....+.++.++++.+|+. +..
T Consensus 82 l~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~l~~~gl~-~~~ 114 (251)
T PRK09544 82 LPLTVNRFLRLR----------------------------------------------PGTKKEDILPALKRVQAG-HLI 114 (251)
T ss_pred cChhHHHHHhcc----------------------------------------------ccccHHHHHHHHHHcCCh-HHH
Confidence 2554443110 000123456678888886 456
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
++++.+|||||+|||+||+||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+|++|
T Consensus 115 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 788999999999999999999999999999999999999999999888743 3899999999999999999999999
Q ss_pred eCCeeeeccCChhHH
Q 008771 330 EMGVSRTYEGNYSQY 344 (554)
Q Consensus 330 ~~g~~~~~~G~~~~~ 344 (554)
++ ++ ...|+.+++
T Consensus 195 ~~-~i-~~~g~~~~~ 207 (251)
T PRK09544 195 NH-HI-CCSGTPEVV 207 (251)
T ss_pred CC-ce-EeeCCHHHH
Confidence 75 44 466766554
No 193
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-42 Score=322.35 Aligned_cols=211 Identities=26% Similarity=0.415 Sum_probs=172.7
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
++++++||+..||...+|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.++|.++ .|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 469999999999999999999999999999999999999999999999999999999999998753 599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
||||.-.+|+.+||.||+..+....... .. .....+.+-+++.
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~------------~~-------------------------~~~~~e~v~~lFP 124 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDK------------EA-------------------------QERDLEEVYELFP 124 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccc------------cc-------------------------ccccHHHHHHHCh
Confidence 9999999999999999997542110000 00 0000011111112
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~ 320 (554)
.+ .+..++...+|||||||.++|||||+.+|++|+|||||.||-|.-.+.+.+.++ +.|.||++|.++..++.
T Consensus 125 ~L---ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al 201 (237)
T COG0410 125 RL---KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL 201 (237)
T ss_pred hH---HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence 11 234577789999999999999999999999999999999999999888877654 34779999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+++||.++|++|++ .+.|+-++....
T Consensus 202 ~iaDr~yvle~Gri-v~~G~~~eL~~~ 227 (237)
T COG0410 202 EIADRGYVLENGRI-VLSGTAAELLAD 227 (237)
T ss_pred HhhCEEEEEeCCEE-EEecCHHHHhcC
Confidence 99999999999997 678877665543
No 194
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-42 Score=333.09 Aligned_cols=192 Identities=30% Similarity=0.452 Sum_probs=164.0
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i 163 (554)
+.+ ||+|+|+++.+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 455 99999998766 99999999 9999999999999999999999999999999998742 159
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..|+.+|+...... ......+.++.+++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l 116 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKR-----------------------------------------KRNREDRISVDELL 116 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhh-----------------------------------------CCHHHHHHHHHHHH
Confidence 9999999888888999987532100 00011234567788
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l 319 (554)
+.+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.+.+++ .|.|||+||||++++
T Consensus 117 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 117 DLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 889986 456888999999999999999999999999999999999999999999888753 388999999999999
Q ss_pred HhhcceEEEeeCCeee
Q 008771 320 DQLCTKIVETEMGVSR 335 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~ 335 (554)
..+||+|++|++|++.
T Consensus 196 ~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 196 EYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHhcCEEEEEECCEEE
Confidence 9999999999999874
No 195
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=339.48 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=170.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CC---CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EP---DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p---~~G~I~~~~~~---------- 160 (554)
++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+. +| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 3689999999999888999999999999999999999999999999999985 46 59999998742
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|+||++.+++ .||.+|+...... .. . ........+
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 124 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRL---------------KG-I----------------------KDKQVLDEA 124 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHH---------------cC-C----------------------CcHHHHHHH
Confidence 25999999988765 7999998532100 00 0 000112344
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+..+++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 204 (252)
T PRK14239 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204 (252)
T ss_pred HHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 566677777632 245788899999999999999999999999999999999999999999988764 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++..+||+|++|++|++. +.|...+.
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T PRK14239 205 RSMQQASRISDRTGFFLDGDLI-EYNDTKQM 234 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55665554
No 196
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=339.75 Aligned_cols=210 Identities=19% Similarity=0.254 Sum_probs=172.2
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
+++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4679999999999888899999999999999999999999999999999999875 89999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..++|+||++.+++ .|+.+|+...... .. .........
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~ 122 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI---------------HG-----------------------IKDKKELDK 122 (251)
T ss_pred HHHhheEEEecCCCcCC-CcHHHHHHhHHHh---------------cC-----------------------CCcHHHHHH
Confidence 24999999998766 8999998532100 00 000011233
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+|
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiiv 202 (251)
T PRK14270 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIV 202 (251)
T ss_pred HHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4566777777642 345788899999999999999999999999999999999999999999888764 26899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++.++||+|++|++|++. ..|+.++.
T Consensus 203 sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14270 203 THNMQQASRVSDYTAFFLMGDLI-EFNKTEKI 233 (251)
T ss_pred EcCHHHHHHhcCEEEEEECCeEE-EeCCHHHH
Confidence 99999999999999999999975 44655543
No 197
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=341.79 Aligned_cols=211 Identities=18% Similarity=0.279 Sum_probs=173.9
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCCc--------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM-------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~~-------- 161 (554)
..+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 356999999999998899999999999999999999999999999999999986 5899999987432
Q ss_pred ----eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 162 ----~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
.|+|+||++.+++ .||.+|+....... . .......+.
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~ 138 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERA---------------G-----------------------VKDKKVLDE 138 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhc---------------C-----------------------CCCHHHHHH
Confidence 4999999988765 69999985431100 0 000112334
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 139 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 218 (267)
T PRK14237 139 IVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIV 218 (267)
T ss_pred HHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5666777777742 345788999999999999999999999999999999999999999999887753 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++..+||+|++|++|++. ..|+..++.
T Consensus 219 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14237 219 THNMQQAARASDYTAFFYLGDLI-EYDKTRNIF 250 (267)
T ss_pred ecCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999985 556666543
No 198
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=340.78 Aligned_cols=211 Identities=20% Similarity=0.276 Sum_probs=172.6
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--C---CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~~~~--------- 160 (554)
+++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 356999999999998889999999999999999999999999999999999987 3 69999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|+||++.+++. |+.+|+...... .. .........
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~ 130 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRI---------------HG-----------------------TKNKKKLQE 130 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHh---------------cC-----------------------CCCHHHHHH
Confidence 249999999887664 999987532100 00 000112234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. +..++.+.+|||||+||++|||+|+.+|++|||||||++||+.++..+.+.|++ .+.|+|+|
T Consensus 131 ~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 210 (259)
T PRK14274 131 IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIV 210 (259)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5666777777742 245788999999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++.++||+|++|++|++. ..|+.+++.
T Consensus 211 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 242 (259)
T PRK14274 211 THNMQQAARVSDQTAFFYMGELV-ECNDTNKMF 242 (259)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999974 557666553
No 199
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=339.05 Aligned_cols=209 Identities=20% Similarity=0.313 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-----ceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~~~~----------- 160 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 589999999999889999999999999999999999999999999999999874 8999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|++|++.+++..|+.+|+....... . . .......+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---------------~-~----------------------~~~~~~~~~~ 125 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLA---------------G-I----------------------RDRDHLMEVA 125 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhc---------------C-C----------------------CCHHHHHHHH
Confidence 15999999998888889999985322100 0 0 0000112233
Q ss_pred HHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.+++..+++. ....++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|++||
T Consensus 126 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 126 ERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 3444444432 1234778899999999999999999999999999999999999999999988754 3689999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. +.|..+++
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14272 206 NMHQAARVSDTTSFFLVGDLV-EHGPTDQL 234 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999974 55665554
No 200
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=338.54 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~----------- 160 (554)
.|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999888899999999999999999999999999999999999763 79999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|++|++.+++ .|+.+|+...... .. .......++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~---------------~~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRT---------------HG-----------------------IKDKKKLDEIV 123 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 24899999988766 8999988532100 00 00001123445
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14240 124 EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 55666666532 245788899999999999999999999999999999999999999999888753 3789999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++.++||+|++|++|++. ..|+.+++
T Consensus 204 ~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (250)
T PRK14240 204 NMQQASRISDKTAFFLNGEIV-EFGDTVDL 232 (250)
T ss_pred CHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999985 44555543
No 201
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.5e-41 Score=341.95 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeC---------CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------
Q 008771 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~---------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------- 160 (554)
+|+++||++.|+ ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 589999999997 4789999999999999999999999999999999999999999999998753
Q ss_pred ------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
..++|++|++. +++..|+.+++...... . .....
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~--------------~------------------------~~~~~ 124 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH--------------L------------------------LSLDK 124 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh--------------h------------------------ccCCH
Confidence 25999999973 44567888886421100 0 00011
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCe
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~t 308 (554)
.....++.++++.+|+.....++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|
T Consensus 125 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 204 (268)
T PRK10419 125 AERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTA 204 (268)
T ss_pred HHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcE
Confidence 122346778888999965567889999999999999999999999999999999999999998888877642 4889
Q ss_pred EEEEecCHHHHHhhcceEEEeeCCeeeeccCChh
Q 008771 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
+|+||||++++..+||+|++|++|++. +.|+..
T Consensus 205 iiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~ 237 (268)
T PRK10419 205 CLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVG 237 (268)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEe-eeCChh
Confidence 999999999999999999999999874 445443
No 202
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.6e-42 Score=331.27 Aligned_cols=189 Identities=28% Similarity=0.441 Sum_probs=161.4
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEE
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAF 165 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~ 165 (554)
++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 4799999998899999999999999999999999999999999999999999999998754 15999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..|+.+|+...... .........+++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~ 121 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY---------------------------------------KKLSKKEKREKKKEALEK 121 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999888889999987532100 000111234567788899
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|++|||++++ .+
T Consensus 122 ~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~ 199 (206)
T TIGR03608 122 VGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQ 199 (206)
T ss_pred cCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh
Confidence 9985 456888999999999999999999999999999999999999999999988754 488999999999987 57
Q ss_pred cceEEEe
Q 008771 323 CTKIVET 329 (554)
Q Consensus 323 ~d~i~~l 329 (554)
||+|++|
T Consensus 200 ~d~i~~l 206 (206)
T TIGR03608 200 ADRVIEL 206 (206)
T ss_pred cCEEEeC
Confidence 9999875
No 203
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-41 Score=335.92 Aligned_cols=205 Identities=30% Similarity=0.428 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|+++.|++. +|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4789999999865 8999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...+.. ...........+.++++.+|+.
T Consensus 80 ~~~~~~~t~~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~ 120 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKK---------------------------------------RKVDKKEIERKVLEIAEMLGID 120 (235)
T ss_pred CccCCCccHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCCh
Confidence 9887789999998532100 0001122344567788889996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|++||++.++.++||+
T Consensus 121 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 121 -HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred -hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 567888999999999999999999999999999999999999999999988753 389999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++. ..|++++.
T Consensus 200 i~~l~~G~i~-~~~~~~~~ 217 (235)
T cd03299 200 VAIMLNGKLI-QVGKPEEV 217 (235)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999874 55666544
No 204
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.1e-41 Score=334.17 Aligned_cols=195 Identities=27% Similarity=0.396 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeCC-------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc--CC--C-----
Q 008771 97 GVKLENISKSYKG-------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA--KS--N----- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~-------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~--~~--~----- 160 (554)
+|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999962 479999999999999999999999999999999999999999999997 31 1
Q ss_pred ---------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 161 ---------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
..++|++|++.+++..|+.+|+...... . ...
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----------------~-----------------------~~~ 121 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE----------------R-----------------------GVP 121 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH----------------c-----------------------CCC
Confidence 2589999999888889999987532100 0 001
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCe
Q 008771 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~t 308 (554)
.....+++.++++.+|+.....++++.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201 (224)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1123446677888999975455788999999999999999999999999999999999999999999888753 4889
Q ss_pred EEEEecCHHHHHhhcceEEEee
Q 008771 309 MVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l~ 330 (554)
||+||||++++..+||+|+.+.
T Consensus 202 ii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 202 LIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred EEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999864
No 205
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6e-42 Score=307.08 Aligned_cols=198 Identities=27% Similarity=0.438 Sum_probs=171.7
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
.|+++++++..+. ..+|++|+|.|++||.++||||+|||||||+-+++|+..|++|+|++.|..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5899999998853 469999999999999999999999999999999999999999999998753
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..||+|||.+.+.+++|..||++.+.. +.. -........
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPle---------------L~g------------------------e~~~~~~~~ 126 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLE---------------LRG------------------------ESSADSRAG 126 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhh---------------hcC------------------------CccccHHHH
Confidence 369999999999999999999865421 000 012334556
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisH 314 (554)
+.++|..+||. ..+..+|.+|||||||||+||||++..|+||+.||||-+||..+-+.+.++| ++.|.|+|+|||
T Consensus 127 A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 127 AKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred HHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeC
Confidence 88899999997 4668889999999999999999999999999999999999999887777765 568999999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|+.++.+ |+|++.|++|++.
T Consensus 206 D~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 206 DPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CHHHHHh-hhheeeeecceec
Confidence 9999987 9999999999874
No 206
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-41 Score=355.27 Aligned_cols=197 Identities=26% Similarity=0.396 Sum_probs=168.2
Q ss_pred eEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEEEe
Q 008771 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (554)
Q Consensus 102 ~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~v~ 167 (554)
||+++|++..+ |+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987664 8999999999999999999999999999999999999999988732 2489999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++.+||.+|+...+.. ........++.++++.+|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~g 120 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKR-----------------------------------------ARPSERRISFERVIELLG 120 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhc-----------------------------------------cChhHHHHHHHHHHHHcC
Confidence 999988889999998532110 001122345778899999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~ 323 (554)
|. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|+|+||||++++..+|
T Consensus 121 L~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 121 IG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 96 467899999999999999999999999999999999999999999988887653 4899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhH
Q 008771 324 TKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~ 343 (554)
|+|++|++|++. ..|..++
T Consensus 200 d~i~~l~~G~i~-~~g~~~~ 218 (354)
T TIGR02142 200 DRVVVLEDGRVA-AAGPIAE 218 (354)
T ss_pred CEEEEEeCCEEE-EECCHHH
Confidence 999999999974 5565544
No 207
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=340.82 Aligned_cols=197 Identities=20% Similarity=0.310 Sum_probs=162.8
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC--------
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~-------- 160 (554)
...+|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 3457999999999998899999999999999999999999999999999999987 699999998743
Q ss_pred ----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..|+|+||++.+++ .||.+|+...... . ... ...+
T Consensus 90 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~------------------------~~~-~~~~ 128 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFP-KSIYENIAFGARI---------------N------------------------GYT-GDMD 128 (269)
T ss_pred HHHhhceEEEccCCccch-hhHHHHHhhhhhh---------------c------------------------CCc-HHHH
Confidence 14999999998766 5999998532100 0 000 0112
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 008771 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (554)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIi 311 (554)
+++.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 129 ~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 208 (269)
T PRK14259 129 ELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208 (269)
T ss_pred HHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 3344555666552 1345788899999999999999999999999999999999999999999888753 3689999
Q ss_pred EecCHHHHHhhcceEEEeeC
Q 008771 312 ISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l~~ 331 (554)
||||++++..+||+|++|++
T Consensus 209 vtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 209 VTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred EeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999997
No 208
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.3e-41 Score=338.22 Aligned_cols=207 Identities=20% Similarity=0.289 Sum_probs=170.7
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC----CceeEEEcCCC--------ceE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~~~~--------~~i 163 (554)
..|+++|++++| ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|
T Consensus 3 ~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 3 QQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred cEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 358999999999 67899999999999999999999999999999999999999 99999998754 259
Q ss_pred EEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 164 AFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 164 ~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
+|++|++. +.+..|+.+++..... .......+.++.+
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~ 120 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCL-----------------------------------------ALGKPADDATLTA 120 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHH-----------------------------------------HcCCChHHHHHHH
Confidence 99999975 3344677766532100 0000112345777
Q ss_pred HhhhcCCCcc--ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 242 LMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 242 ~l~~lgl~~~--~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
+++.+|+... ..++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 121 ~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 121 ALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred HHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 8888998642 45788999999999999999999999999999999999999999888887643 47899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++++..+||+|++|++|++ ...|+..++.
T Consensus 201 ~~~~~~~~d~v~~l~~G~i-~~~~~~~~~~ 229 (254)
T PRK10418 201 MGVVARLADDVAVMSHGRI-VEQGDVETLF 229 (254)
T ss_pred HHHHHHhCCEEEEEECCEE-EEecCHHHHh
Confidence 9999999999999999997 4567666543
No 209
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=344.85 Aligned_cols=209 Identities=22% Similarity=0.325 Sum_probs=173.5
Q ss_pred CccEEEEeEEEEeCC------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------
Q 008771 95 SSGVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------- 161 (554)
..+|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 356999999999963 4699999999999999999999999999999999999999999999987431
Q ss_pred ----eEEEEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 162 ----KIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 162 ----~i~~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
.++|+||++.. ++..||.+|+...... .........
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~---------------------------------------~~~~~~~~~ 122 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN---------------------------------------LGIPPEEIR 122 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhh---------------------------------------cCCCHHHHH
Confidence 48999999742 3446888887432100 001112334
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii 312 (554)
.++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..|.+.|++ .|.|||+|
T Consensus 123 ~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv 201 (280)
T PRK13633 123 ERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILI 201 (280)
T ss_pred HHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5678889999996 567899999999999999999999999999999999999999999999888753 48999999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++.. ||+|++|++|++. +.|+..++.
T Consensus 202 tH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~ 232 (280)
T PRK13633 202 THYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIF 232 (280)
T ss_pred ecChHHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 999999976 9999999999874 557766554
No 210
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.2e-41 Score=331.39 Aligned_cols=196 Identities=26% Similarity=0.364 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
++++|+++.|+. ++.|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 478999999974 5789999999999999999999999999999999999999999998753 249999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...+... .......+.++.++++.+|+.
T Consensus 79 ~~~~~~~t~~en~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~l~ 119 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPG---------------------------------------LKLNAEQQEKVVDAAQQVGIA 119 (213)
T ss_pred CccCCCCcHHHHHHhHhhcc---------------------------------------CCccHHHHHHHHHHHHHcCcH
Confidence 98888889999985321100 000011234567788899996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
+..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|+||||++++.++||+
T Consensus 120 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 120 -DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred -HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 456889999999999999999999999999999999999999999988887643 478999999999999999999
Q ss_pred EEEeeCCeee
Q 008771 326 IVETEMGVSR 335 (554)
Q Consensus 326 i~~l~~g~~~ 335 (554)
+++|++|++.
T Consensus 199 v~~l~~g~i~ 208 (213)
T TIGR01277 199 IAVVSQGKIK 208 (213)
T ss_pred EEEEECCeEE
Confidence 9999999874
No 211
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=342.92 Aligned_cols=210 Identities=21% Similarity=0.288 Sum_probs=170.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
.+.|+++|++++|++..+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred ceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 457999999999988889999999999999999999999999999999999864 499999998732
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .||.||+...... .. . ......+.
T Consensus 117 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~ 157 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFP-KSIFDNIAYGPRL---------------HG-I----------------------NDKKQLEE 157 (286)
T ss_pred HhhhcEEEECCCCCCCc-cCHHHHHHhHHHh---------------cC-C----------------------CcHHHHHH
Confidence 25999999998766 4999998532100 00 0 00011233
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+. .+..++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+|
T Consensus 158 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIiv 237 (286)
T PRK14275 158 IVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIV 237 (286)
T ss_pred HHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 455566666663 2345788899999999999999999999999999999999999999999988864 25799999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++. ..|...+.
T Consensus 238 sH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~ 268 (286)
T PRK14275 238 THNMQQASRVSDYTMFFYEGVLV-EHAPTAQL 268 (286)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999974 55665544
No 212
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.6e-42 Score=329.79 Aligned_cols=190 Identities=23% Similarity=0.339 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 4789999999998899999999999999999999999999999999999999999999998743 2489999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..|+.+|+...... .. .....++.++++.+|
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~-~~~~~~~~~~l~~~g 118 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRL-----------------------------------------HG-PGDDEALWEALAQVG 118 (204)
T ss_pred CccccCcCCcHHHHHHHHHHh-----------------------------------------cC-ccHHHHHHHHHHHcC
Confidence 998887888999997532100 00 012345777889999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d 324 (554)
+. ...++++.+|||||+||++||+||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++..+.+
T Consensus 119 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 119 LA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 86 356889999999999999999999999999999999999999999999988754 48899999999999999888
Q ss_pred eEEEe
Q 008771 325 KIVET 329 (554)
Q Consensus 325 ~i~~l 329 (554)
|++++
T Consensus 198 ~~~~~ 202 (204)
T PRK13538 198 RKLRL 202 (204)
T ss_pred eEEec
Confidence 88776
No 213
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-41 Score=341.61 Aligned_cols=209 Identities=19% Similarity=0.290 Sum_probs=171.9
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC--------
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~-------- 160 (554)
..++|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 4567999999999988899999999999999999999999999999999999987 699999998743
Q ss_pred ----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..++|++|++.+++. ||.+|+...... . ... ....
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~---------------~------------------------~~~-~~~~ 154 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKI---------------Q------------------------GYD-GDID 154 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHH---------------c------------------------CCc-HHHH
Confidence 258999999877664 999987532100 0 000 0123
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEE
Q 008771 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVI 311 (554)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIi 311 (554)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|++. +.|||+
T Consensus 155 ~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii 234 (285)
T PRK14254 155 ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVI 234 (285)
T ss_pred HHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 45667778888742 3457889999999999999999999999999999999999999999998887642 579999
Q ss_pred EecCHHHHHhhcceEE-EeeCCeeeeccCChhHH
Q 008771 312 ISHDRAFLDQLCTKIV-ETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 312 isHd~~~l~~~~d~i~-~l~~g~~~~~~G~~~~~ 344 (554)
||||++++..+||+++ +|++|++. ..|+..++
T Consensus 235 ~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~ 267 (285)
T PRK14254 235 VTHNMQQAARISDKTAVFLTGGELV-EFDDTDKI 267 (285)
T ss_pred EeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHH
Confidence 9999999999999975 57999975 44665543
No 214
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=343.24 Aligned_cols=207 Identities=25% Similarity=0.397 Sum_probs=172.8
Q ss_pred ccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
++|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4699999999995 46799999999999999999999999999999999999999999999987432 48
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. .++..|+.+|+...... ..........++.++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 126 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLEN---------------------------------------KKVPPKKMKDIIDDL 126 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999974 55678999998532100 001112234467788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~ 318 (554)
++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ . +.|||++|||+++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 127 AKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred HHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 8999986 467889999999999999999999999999999999999999999999888754 2 5899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+. .||+|++|++|++. ..|+..++
T Consensus 206 ~~-~~d~v~~l~~G~i~-~~g~~~~~ 229 (271)
T PRK13632 206 AI-LADKVIVFSEGKLI-AQGKPKEI 229 (271)
T ss_pred Hh-hCCEEEEEECCEEE-EecCHHHH
Confidence 96 79999999999974 45665544
No 215
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2e-41 Score=335.11 Aligned_cols=206 Identities=32% Similarity=0.479 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+||+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 478999999998899999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...... . ........+.+.++++.+++.
T Consensus 81 ~~~~~~~t~~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEI---------------R------------------------KHPKAKIKARVEELLELVQLE 121 (237)
T ss_pred hhhccCCcHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999987532100 0 000111234567788888885
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++.+.+|||||+||++|||||+.+|+++||||||++||+.+++++.++|++ .+.|||++||+++++.++||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 122 -GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred -hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 567888999999999999999999999999999999999999999999988753 378999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++. ..|+.+++
T Consensus 201 i~~l~~g~i~-~~~~~~~~ 218 (237)
T TIGR00968 201 IVVMSNGKIE-QIGSPDEV 218 (237)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999974 45655544
No 216
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=341.53 Aligned_cols=210 Identities=23% Similarity=0.330 Sum_probs=172.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
.++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4578999999999989999999999999999999999999999999999999985 79999998742
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.+++ .|+.+|+....... . ..........
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 139 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH---------------K-----------------------LVPRKEFRGV 139 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhc---------------c-----------------------CCCHHHHHHH
Confidence 25899999988766 79999875321000 0 0001112234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++++|.+.|++ .+.|||+||
T Consensus 140 ~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivs 219 (276)
T PRK14271 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219 (276)
T ss_pred HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 556677777753 235678899999999999999999999999999999999999999999888754 258999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++. ..|+.+++
T Consensus 220 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~ 249 (276)
T PRK14271 220 HNLAQAARISDRAALFFDGRLV-EEGPTEQL 249 (276)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999874 45665554
No 217
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=336.87 Aligned_cols=208 Identities=22% Similarity=0.286 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~----------- 160 (554)
+|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 58999999999888899999999999999999999999999999999999874 89999998732
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..++|++|++.++. .|+.+|+....... . .......+..+
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---------------~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIH---------------G-----------------------VKSKHKLDRIV 123 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHc---------------C-----------------------CCcHHHHHHHH
Confidence 25999999988766 89999985321100 0 00001123345
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+|||
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH 203 (250)
T PRK14262 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 56667777642 235788899999999999999999999999999999999999999999988754 3689999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. ..|+.++.
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14262 204 NIGQAIRIADYIAFMYRGELI-EYGPTREI 232 (250)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 999999999999999999985 45665543
No 218
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1e-41 Score=355.94 Aligned_cols=205 Identities=24% Similarity=0.337 Sum_probs=174.7
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC----C--------------ce
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----N--------------MK 162 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~----~--------------~~ 162 (554)
.++.++|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. + ..
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45677888889999999999999999999999999999999999999999999999873 1 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|+||++.+++..||.+|+...... ..+...+.+.++.++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~---------------------------------------~g~~~~~~~~~a~e~ 148 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM---------------------------------------QGMPEAERRKRVDEQ 148 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998999999998643100 001112334567888
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~ 318 (554)
++.+||. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. +.++||||||||+++
T Consensus 149 le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 149 LELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999996 56789999999999999999999999999999999999999999999888764 248999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+.++||+|++|++|++. ..|+.+++..
T Consensus 228 ~~~l~DrI~vl~~G~iv-~~g~~~ei~~ 254 (382)
T TIGR03415 228 ALKIGNRIAIMEGGRII-QHGTPEEIVL 254 (382)
T ss_pred HHHhCCEEEEEECCEEE-EecCHHHHhh
Confidence 99999999999999974 5566665543
No 219
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=336.59 Aligned_cols=208 Identities=19% Similarity=0.280 Sum_probs=168.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-----ceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~~~~---------- 160 (554)
+.|+++|++++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4689999999999888999999999999999999999999999999999999997 6999987642
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++ .|+.+|+...... .. . ......+..
T Consensus 83 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 123 (251)
T PRK14249 83 LRKRVGMVFQQPNPFP-KSIFDNVAFGPRM---------------LG-T----------------------TAQSRLDEV 123 (251)
T ss_pred hhceEEEEecCCccCc-CcHHHHHhhHHHh---------------cC-C----------------------ChhhHHHHH
Confidence 24999999998776 4999998532100 00 0 000012233
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivs 203 (251)
T PRK14249 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203 (251)
T ss_pred HHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 444555555531 245788899999999999999999999999999999999999999999888754 478999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
||++++..+||+|++|++|++. +.|+..+
T Consensus 204 h~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 232 (251)
T PRK14249 204 HNMQQAARASDWTGFLLTGDLV-EYGRTGE 232 (251)
T ss_pred CCHHHHHhhCCEEEEEeCCeEE-EeCCHHH
Confidence 9999999999999999999874 4455544
No 220
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2e-41 Score=339.47 Aligned_cols=244 Identities=21% Similarity=0.371 Sum_probs=204.7
Q ss_pred hhHHHHhccCcchhhhhhhccccCCCCC---CCCCccEEEEeEEEEeCC-----------eeeEEceeEEEECCCEEEEE
Q 008771 64 SDVESLFSSSADEFENKKYSNKQSNTGA---SSISSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLV 129 (554)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~ls~~y~~-----------~~~l~~isl~i~~Ge~~~lv 129 (554)
+..+++|..|+++|++......+...++ ...++.++.+++.+.|.- ..++++|||++++|+.+|||
T Consensus 240 ~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlV 319 (534)
T COG4172 240 GTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319 (534)
T ss_pred CcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEE
Confidence 4578899999999999888776554332 234578999999999931 24899999999999999999
Q ss_pred CCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------------eEEEEeccc--ccccCccHHHHHHHhhHHHHHHHH
Q 008771 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------KIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------------~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
|+||||||||-++|.+++++. |+|.++|.++ ++-.||||| .+.|.+||.+.+..++. ++
T Consensus 320 GESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~----vh- 393 (534)
T COG4172 320 GESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR----VH- 393 (534)
T ss_pred ecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh----hc-
Confidence 999999999999999999877 9999998643 588999998 46678899887754421 00
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
+ ...+..+.++++.+.|.++||++...+|+|+++|||||||++|||||
T Consensus 394 ---------~-----------------------~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAl 441 (534)
T COG4172 394 ---------E-----------------------PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL 441 (534)
T ss_pred ---------C-----------------------CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHH
Confidence 0 02344566788999999999999999999999999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+.+|++++||||||+||......+.++|+ +++.+.+|||||+..+..+||+|++|.+|+++ -.|+.++...
T Consensus 442 iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV-E~G~~~~if~ 516 (534)
T COG4172 442 ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV-EQGPTEAVFA 516 (534)
T ss_pred hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe-eeCCHHHHhc
Confidence 99999999999999999988888777764 57999999999999999999999999999985 4566665544
No 221
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-41 Score=340.60 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC--------ceeEEEcCCCc-------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--------SGNVIKAKSNM------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~--------~G~I~~~~~~~------- 161 (554)
+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 389999999999889999999999999999999999999999999999999998 99999987432
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.++|+||++..++..|+.+|+......... . ...........
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~-------------~----------------------~~~~~~~~~~~ 125 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR-------------R----------------------AGALTHRDGEI 125 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhccccccc-------------c----------------------cccCCHHHHHH
Confidence 389999998766778999998542100000 0 00000112345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc---------cCCCeEeecCCCCCCCHHHHHHHHHHHcc----C
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~ 305 (554)
+.++++.+|+.. ..++++.+|||||+|||+|||||+ .+|++|||||||++||+.+++.+.+.|++ .
T Consensus 126 ~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 204 (272)
T PRK13547 126 AWQALALAGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW 204 (272)
T ss_pred HHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc
Confidence 677888899863 568889999999999999999999 59999999999999999999999888753 3
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
+.|||+||||++++.++||+|++|++|++. +.|+..+
T Consensus 205 ~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 241 (272)
T PRK13547 205 NLGVLAIVHDPNLAARHADRIAMLADGAIV-AHGAPAD 241 (272)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCeEE-EecCHHH
Confidence 899999999999999999999999999874 4565443
No 222
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=336.50 Aligned_cols=203 Identities=22% Similarity=0.322 Sum_probs=164.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--C---CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~~~~---------- 160 (554)
.+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 46999999999998889999999999999999999999999999999999875 5 59999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.+++ .|+.+|+...... .. . ......+.+
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~~-~----------------------~~~~~~~~~ 124 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRL---------------AG-V----------------------KDKAVLDEA 124 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHH---------------cC-C----------------------CCHHHHHHH
Confidence 25999999988766 6999997532110 00 0 000011223
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.+.++.+++. ....++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+||
T Consensus 125 ~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 204 (252)
T PRK14255 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVT 204 (252)
T ss_pred HHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 44445555542 1245778899999999999999999999999999999999999999999888754 258999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeec
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTY 337 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~ 337 (554)
||++++.++||+|++|++|++..+
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 205 HSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999998654
No 223
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=343.64 Aligned_cols=209 Identities=22% Similarity=0.359 Sum_probs=175.0
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc---eeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---GNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~---G~I~~~~~~---------- 160 (554)
.+|+++|+++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.++|.+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999964 469999999999999999999999999999999999999988 899998753
Q ss_pred ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 ~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|||++|++. .++..||.+|+...... ......+..+++
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~ 124 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN---------------------------------------RAVPRPEMIKIV 124 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh---------------------------------------CCCCHHHHHHHH
Confidence 25899999985 56678999998532100 001112334567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+. ...++++.+|||||+||++||+||+.+|++|||||||++||+.++..|.+.|++ .|.|||+||||
T Consensus 125 ~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 8889999996 467899999999999999999999999999999999999999999999888743 48899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++++. .||+|++|++|++. ..|+.+++..
T Consensus 204 ~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 232 (282)
T PRK13640 204 IDEAN-MADQVLVLDDGKLL-AQGSPVEIFS 232 (282)
T ss_pred HHHHH-hCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99995 79999999999975 5566665543
No 224
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.9e-41 Score=336.26 Aligned_cols=213 Identities=22% Similarity=0.302 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEcCCC-----------ceE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~~~~-----------~~i 163 (554)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..|
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 478999999999888999999999999999999999999999999999995 6999999998853 249
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..++.+++...... + .. . .....+.......++.+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~----~~--------------~----~~~~~~~~~~~~~~~~~~l 128 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNA----------V----RS--------------Y----RGQEPLDRFDFQDLMEEKI 128 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhh----------h----hc--------------c----cccccchHHHHHHHHHHHH
Confidence 9999998776665654443211000 0 00 0 0000011122345677888
Q ss_pred hhcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l 319 (554)
+.++++....++.+. +|||||||||+|||||+.+|++|||||||++||+.+++++.+.++ +.++|||+||||++++
T Consensus 129 ~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 889986555677775 799999999999999999999999999999999999999988664 4578999999999999
Q ss_pred Hhh-cceEEEeeCCeeeeccCChh
Q 008771 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 320 ~~~-~d~i~~l~~g~~~~~~G~~~ 342 (554)
..+ ||+|++|++|++ .+.|+++
T Consensus 209 ~~~~~d~i~~l~~g~i-~~~g~~~ 231 (248)
T PRK09580 209 DYIKPDYVHVLYQGRI-VKSGDFT 231 (248)
T ss_pred HhhhCCEEEEEECCeE-EEeCCHH
Confidence 887 899999999987 4667766
No 225
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=342.22 Aligned_cols=209 Identities=24% Similarity=0.337 Sum_probs=174.1
Q ss_pred ccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------e
Q 008771 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~ 162 (554)
.+|+++||+++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 36899999999974 3599999999999999999999999999999999999999999999987432 4
Q ss_pred EEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 163 i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|+|++|++. .++..||.+|+...... .........+++..
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~ 123 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMEN---------------------------------------QGIPREEMIKRVDE 123 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 899999984 56678999998532100 00011123345777
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
+++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..|.+.++ +.|.|||+||||++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 124 ALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 88888985 46788999999999999999999999999999999999999999999988874 24899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++. .||+|++|++|++. ..|+.+++..
T Consensus 203 ~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 229 (277)
T PRK13642 203 EAA-SSDRILVMKAGEII-KEAAPSELFA 229 (277)
T ss_pred HHH-hCCEEEEEECCEEE-EeCCHHHHhc
Confidence 997 59999999999974 5677666543
No 226
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=341.48 Aligned_cols=207 Identities=24% Similarity=0.411 Sum_probs=172.3
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
++|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 46999999999975 3599999999999999999999999999999999999999999999988532 48
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. +++..|+.+|+...... .........+++.++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 126 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLEN---------------------------------------HAVPYDEMHRRVSEA 126 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999985 55677888887432100 000111223456778
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||+++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~ 205 (269)
T PRK13648 127 LKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205 (269)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence 8889986 466888999999999999999999999999999999999999999999888753 47899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+.. ||+|++|++|++. +.|+.+++
T Consensus 206 ~~~-~d~i~~l~~G~i~-~~g~~~~~ 229 (269)
T PRK13648 206 AME-ADHVIVMNKGTVY-KEGTPTEI 229 (269)
T ss_pred Hhc-CCEEEEEECCEEE-EecCHHHH
Confidence 985 9999999999974 45665544
No 227
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=335.70 Aligned_cols=208 Identities=19% Similarity=0.302 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~----------- 160 (554)
+|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988899999999999999999999999999999999999986 59999998742
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..++|++|++.+++ .||.+|+...... .. . ......++++.
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~---------------~~-~----------------------~~~~~~~~~~~ 123 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRA---------------QG-I----------------------KDKKVLDEVVE 123 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHh---------------cC-C----------------------CchHHHHHHHH
Confidence 24999999988776 7999998532100 00 0 00011233455
Q ss_pred HHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 008771 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (554)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd 315 (554)
++++.+|+.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||+
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 203 (249)
T PRK14253 124 RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203 (249)
T ss_pred HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 5666666532 345778899999999999999999999999999999999999999999888754 36899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||+|++|++|++. ..|+.+++
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 231 (249)
T PRK14253 204 MQQARRISDRTAFFLMGELV-EHDDTQVI 231 (249)
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999975 44655443
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=340.13 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=168.2
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
.++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 357999999999988889999999999999999999999999999999999987 699999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|+||++.+++ .|+.+|+....... . .. .....+.
T Consensus 102 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~---------------~-~~----------------------~~~~~~~ 142 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH---------------G-IK----------------------DKKTLDE 142 (271)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHHHHHHHhc---------------C-CC----------------------cHHHHHH
Confidence 24999999988765 59999985321100 0 00 0001122
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
.+.++++.+++. ....++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 143 ~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 222 (271)
T PRK14238 143 IVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIV 222 (271)
T ss_pred HHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEE
Confidence 234444444321 1235678899999999999999999999999999999999999999999988754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++. ..|+..++
T Consensus 223 sH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 253 (271)
T PRK14238 223 THNMQQAARISDKTAFFLNGYVN-EYDDTDKI 253 (271)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999985 45666554
No 229
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.9e-41 Score=334.99 Aligned_cols=191 Identities=28% Similarity=0.446 Sum_probs=160.0
Q ss_pred EEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe-ccccccc
Q 008771 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS-QEFEVSM 174 (554)
Q Consensus 105 ~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~-Q~~~~~~ 174 (554)
+.|+.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 55677789999999999999999999999999999999999999999999998743 2589998 5566777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..|+.+|+..... +. ....+....++..+++.+|+. ...+
T Consensus 109 ~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~~~~ 148 (236)
T cd03267 109 DLPVIDSFYLLAA---------------IY------------------------DLPPARFKKRLDELSELLDLE-ELLD 148 (236)
T ss_pred CCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhc
Confidence 8899998742100 00 001112334566778888986 4568
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||+||++||+||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+||+|++|+
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 88999999999999999999999999999999999999999999998753 37899999999999999999999999
Q ss_pred CCeee
Q 008771 331 MGVSR 335 (554)
Q Consensus 331 ~g~~~ 335 (554)
+|++.
T Consensus 229 ~G~i~ 233 (236)
T cd03267 229 KGRLL 233 (236)
T ss_pred CCEEE
Confidence 99874
No 230
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=377.50 Aligned_cols=212 Identities=21% Similarity=0.344 Sum_probs=178.1
Q ss_pred CccEEEEeEEEEeCC-----------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---
Q 008771 95 SSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~-----------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--- 160 (554)
.++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999961 469999999999999999999999999999999999999999999998742
Q ss_pred ----------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Q 008771 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (554)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (554)
..|+||||++ .+++..||.+++...+.. . .
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~---------------~-----------------------~ 432 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV---------------H-----------------------G 432 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH---------------c-----------------------C
Confidence 2599999997 467788999998532100 0 0
Q ss_pred hCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----c
Q 008771 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (554)
Q Consensus 229 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~ 304 (554)
.........++.++|+.+||+....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +
T Consensus 433 ~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 433 LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000112345678899999996556789999999999999999999999999999999999999999999988873 3
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.|.|||+||||++++..+||+|++|++|+++ ..|...++.
T Consensus 513 ~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~~i~ 552 (623)
T PRK10261 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRRAVF 552 (623)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 5899999999999999999999999999974 567665543
No 231
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3e-41 Score=330.14 Aligned_cols=197 Identities=26% Similarity=0.410 Sum_probs=167.5
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------- 160 (554)
|+++|+++.|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999974 679999999999999999999999999999999999999999999998753
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..|+|++|++.+++..|+.+|+...... . .....+..+.++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~---------------~-----------------------~~~~~~~~~~~~~ 123 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALEL---------------Q-----------------------PNLSYQEARERAR 123 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHh---------------c-----------------------cCCCHHHHHHHHH
Confidence 2599999999888888999987532100 0 0011122345678
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~ 316 (554)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||+
T Consensus 124 ~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 124 AMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 889999995 566888999999999999999999999999999999999999999888877643 489999999999
Q ss_pred HHHHhhcceEEEeeCCee
Q 008771 317 AFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~ 334 (554)
+.. ++||+|++|++|++
T Consensus 203 ~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 203 RIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHH-hhCCEEEEEECCEE
Confidence 965 69999999999864
No 232
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.7e-41 Score=327.27 Aligned_cols=186 Identities=25% Similarity=0.404 Sum_probs=162.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|+++.|+++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 478999999998899999999999999999999999999999999999999999999998744 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+..... ...++++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~---------------------------------------------~~~~~~~~~~l~~~~l 115 (201)
T cd03231 81 APGIKTTLSVLENLRFWHA---------------------------------------------DHSDEQVEEALARVGL 115 (201)
T ss_pred ccccCCCcCHHHHHHhhcc---------------------------------------------cccHHHHHHHHHHcCC
Confidence 9988888999998753100 0013456777888888
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcce
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~ 325 (554)
. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|+|+||||...+..+|++
T Consensus 116 ~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 116 N-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred h-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccce
Confidence 6 346788999999999999999999999999999999999999999999988753 489999999999999999999
Q ss_pred EEEe
Q 008771 326 IVET 329 (554)
Q Consensus 326 i~~l 329 (554)
++.+
T Consensus 195 ~~~~ 198 (201)
T cd03231 195 ELDL 198 (201)
T ss_pred eEec
Confidence 9876
No 233
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=335.95 Aligned_cols=209 Identities=18% Similarity=0.257 Sum_probs=170.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~---------- 160 (554)
+.|+++|+++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 358999999999988899999999999999999999999999999999999985 58999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.+++ .|+.+|+....... . ..........
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~~ 126 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRIS---------------A-----------------------KLPQADLDEI 126 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHh---------------c-----------------------CCCHHHHHHH
Confidence 25999999998776 89999985321100 0 0001122334
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+. ....++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~t 206 (259)
T PRK14260 127 VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVT 206 (259)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 55666767763 1345788899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcceEEEee-----CCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETE-----MGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~-----~g~~~~~~G~~~~~ 344 (554)
||++++.++||++++|+ +|+++ ..|+..++
T Consensus 207 H~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~~ 241 (259)
T PRK14260 207 HNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQI 241 (259)
T ss_pred CCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHHH
Confidence 99999999999999997 48764 55666554
No 234
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=6.8e-41 Score=339.92 Aligned_cols=376 Identities=26% Similarity=0.352 Sum_probs=236.2
Q ss_pred eEEEEeCCeeeEEceeE-EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc-HH
Q 008771 102 NISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT-VR 179 (554)
Q Consensus 102 ~ls~~y~~~~~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t-v~ 179 (554)
++..+|+.. -|+=..| ..++|.++||+|+||-||||-+|+|+|.+.|.=|.-. +.... ++..-.|..| +.
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~pp~w-----deVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--DPPSW-----DEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--CCCCH-----HHHHHHhhhhHHH
Confidence 456788632 1111222 3458999999999999999999999999999877531 10000 0000001111 11
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHH-HHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD-EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
++|...+........+.+.+ +.+-.... .-.++... ....-..+++.+.++|. ..++|.++
T Consensus 151 ~YF~~l~~g~~r~v~K~QYV-----------d~iPk~~KG~v~elLk~------~de~g~~devve~l~L~-nvl~r~v~ 212 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYV-----------DLIPKVVKGKVGELLKK------VDERGKFDEVVERLGLE-NVLDRDVS 212 (591)
T ss_pred HHHHHHHcCCcceecchHHH-----------HHHHHHhcchHHHHHHh------hhhcCcHHHHHHHhcch-hhhhhhhh
Confidence 11111110000000000000 00000000 00000000 01112467788889986 46799999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEee--CCe
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE--MGV 333 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~--~g~ 333 (554)
+|||||-||++||.++++++|++++|||||+||...+-...+.++ +.+++||+|.||+..++.++|-|.++. .|.
T Consensus 213 ~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg~ 292 (591)
T COG1245 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGV 292 (591)
T ss_pred hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecCCcc
Confidence 999999999999999999999999999999999987655544443 338999999999999999999988874 443
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceee
Q 008771 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (554)
Q Consensus 334 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (554)
.-+..-+|+ .+..++.+-.+. +..++..-+ +..+.|.
T Consensus 293 YGvvs~p~s--------------------------vr~gIN~yL~Gy--------------l~~EN~R~R---~~~I~F~ 329 (591)
T COG1245 293 YGVVSKPKS--------------------------VRVGINEYLKGY--------------LPEENVRFR---PEEIEFE 329 (591)
T ss_pred ceEeccchH--------------------------HHHHHHHHHhcc--------------Cchhccccc---ccceeee
Confidence 323333332 111111111110 111111111 1223333
Q ss_pred ccCCC-CCC-CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEE
Q 008771 414 FPERG-RSG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (554)
Q Consensus 414 ~~~~~-~~~-~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~ 491 (554)
..+.. ..+ +.+++..++.+.|++. .|+--.-+|+.||+++++||||.||||+.++|+|.++|++|. ..++++.
T Consensus 330 ~~~~~~~~~~~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~~vS 404 (591)
T COG1245 330 EKPPRDDKARDTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVS 404 (591)
T ss_pred ccCcccccccceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----CccceEe
Confidence 32221 223 7788999999999863 334345678889999999999999999999999999999997 3467788
Q ss_pred EEecccccCCCCCCCHHHHHHhhccc-CCHH-HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAED-WRID-DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~-~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|-+|... -+.+.||.+.+...... +... .--+++..+.+ .+.+++++..|||||.|||++
T Consensus 405 yKPQyI~--~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l-~~i~e~~v~~LSGGELQRvaI 466 (591)
T COG1245 405 YKPQYIS--PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-EDLLERPVDELSGGELQRVAI 466 (591)
T ss_pred ecceeec--CCCCCcHHHHHHHhhhhhcccchhHHhhcCccch-HHHHhcccccCCchhHHHHHH
Confidence 8888643 44788999999876543 2222 23457788888 468899999999999999975
No 235
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-41 Score=335.44 Aligned_cols=212 Identities=17% Similarity=0.293 Sum_probs=173.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC------CC--------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SN-------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~------~~-------- 160 (554)
.++|+++|++++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4669999999999999999999999999999999999999999999999999999997766554 22
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++..|+.+|+...... .. .........+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~~ 129 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKS---------------HG-----------------------IKEKREIKKI 129 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHH
Confidence 2589999999888888999998532100 00 0001122345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++.+..||||||||++|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|||+||
T Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvs 209 (257)
T PRK14246 130 VEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS 209 (257)
T ss_pred HHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 667778888752 345778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++..+||++++|++|++.. .|..+++.
T Consensus 210 h~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~~ 240 (257)
T PRK14246 210 HNPQQVARVADYVAFLYNGELVE-WGSSNEIF 240 (257)
T ss_pred CCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999998854 45544443
No 236
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=7.1e-41 Score=334.27 Aligned_cols=214 Identities=20% Similarity=0.290 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCC-----------ce
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MK 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~-----------~~ 162 (554)
++|+++|+++.|+++.+|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.+ ..
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 469999999999888899999999999999999999999999999999998 58999999998742 14
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++|++|++.+++..|+.+++...+..... ... . ..........++.++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~-----------~~~-~--------------------~~~~~~~~~~~~~~~ 133 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRK-----------FQG-L--------------------PELDPLEFLEIINEK 133 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhc-----------ccc-c--------------------ccccHHHHHHHHHHH
Confidence 78999999888888888886432110000 000 0 000011233456778
Q ss_pred hhhcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
++.+|+.....++.+. .|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||+++
T Consensus 134 l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 134 LKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8999996445677776 5999999999999999999999999999999999999999888753 48999999999999
Q ss_pred HHhh-cceEEEeeCCeeeeccCChh
Q 008771 319 LDQL-CTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 319 l~~~-~d~i~~l~~g~~~~~~G~~~ 342 (554)
+..+ ||+|++|++|++. +.|+.+
T Consensus 214 ~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 214 LDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHhhhCCEEEEEeCCEEE-EecChh
Confidence 9876 8999999999874 556544
No 237
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=336.70 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=171.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
.++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 356999999999988889999999999999999999999999999999999987 489999988742
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..++|++|++.+++. |+.+|+...... .. . ......+.
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~ 143 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRL---------------QG-I----------------------NNRRVLDE 143 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHh---------------cC-C----------------------CcHHHHHH
Confidence 258999999887765 999998532100 00 0 00001223
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+++.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+|
T Consensus 144 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiiv 223 (272)
T PRK14236 144 AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIV 223 (272)
T ss_pred HHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4555666677642 245778899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++.++||+|++|++|++. ..|+.+++.
T Consensus 224 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 255 (272)
T PRK14236 224 THNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF 255 (272)
T ss_pred eCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence 99999999999999999999974 556666553
No 238
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-41 Score=333.33 Aligned_cols=208 Identities=20% Similarity=0.300 Sum_probs=169.4
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC------------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------------ 160 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~------------ 160 (554)
-+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 478999999998899999999999999999999999999999999999986 479999998743
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..++|+||++.+++. |+.+|+..... .... .......+..+.
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~---------------~~~~----------------------~~~~~~~~~~~~ 127 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPK---------------LHGL----------------------AKNKKKLDEIVE 127 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHH---------------hcCC----------------------CCCHHHHHHHHH
Confidence 248999999887664 99998753210 0000 000011234566
Q ss_pred HHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 008771 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (554)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd 315 (554)
++++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 7788888853 235678899999999999999999999999999999999999999999888753 37899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++.++||+|++|++|++. +.|+.+++
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIV-EYNTTQEI 235 (251)
T ss_pred HHHHHhhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999974 45655544
No 239
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-41 Score=333.49 Aligned_cols=210 Identities=22% Similarity=0.284 Sum_probs=169.8
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--C---CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~~~~--------- 160 (554)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.+
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 356999999999998899999999999999999999999999999999999975 3 58999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .||.+|+...... .. .......+.
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~---------------~~-----------------------~~~~~~~~~ 124 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRI---------------HG-----------------------EKNKKTLDT 124 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHh---------------cC-----------------------CCCHHHHHH
Confidence 24899999998766 4999998532100 00 000011233
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
.+.++++.+++.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.+++++ .+.|||++
T Consensus 125 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14261 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIV 204 (253)
T ss_pred HHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEE
Confidence 4555666666632 235788899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++.++||+|++|++|++. ..|+.+++
T Consensus 205 sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14261 205 THNMQQAARVSDYTGFMYLGKLI-EFDKTTQI 235 (253)
T ss_pred EcCHHHHHhhCCEEEEEECCEEE-EcCCHHHH
Confidence 99999999999999999999974 55665544
No 240
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.7e-41 Score=329.43 Aligned_cols=191 Identities=29% Similarity=0.490 Sum_probs=154.7
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|+++.|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 789999999975 579999999999999999999999999999999999999999999998743 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++ .|+.+|+....... ....+.++++.
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~~---------------------------------------------~~~~~~~~l~~ 116 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPLA---------------------------------------------DDERILRAAEL 116 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCCC---------------------------------------------CHHHHHHHHHH
Confidence 999997765 69999875321000 00011112222
Q ss_pred cCCCc----------cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEe
Q 008771 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIIS 313 (554)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiis 313 (554)
+++.. ......+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||
T Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 196 (220)
T cd03245 117 AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIIT 196 (220)
T ss_pred cCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 22211 0123446799999999999999999999999999999999999999999988642 47999999
Q ss_pred cCHHHHHhhcceEEEeeCCeee
Q 008771 314 HDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||++++ ++||+|++|++|++.
T Consensus 197 H~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 197 HRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCHHHH-HhCCEEEEEeCCeEe
Confidence 999987 699999999999874
No 241
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-41 Score=309.54 Aligned_cols=200 Identities=25% Similarity=0.354 Sum_probs=173.4
Q ss_pred ccEEEEeEEEEeCCee--eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----eEEEEec
Q 008771 96 SGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQ 168 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~--~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----~i~~v~Q 168 (554)
.++.+++++.+|++++ +|+|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.++++.+ .-|.|||
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 3578899999998876 99999999999999999999999999999999999999999999987632 4699999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
+..+.|.+++.+|+..++.- ..++.......+.+++..+||
T Consensus 82 ~~~LlPWl~~~dNvafgL~l---------------------------------------~Gi~k~~R~~~a~q~l~~VgL 122 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQL---------------------------------------RGIEKAQRREIAHQMLALVGL 122 (259)
T ss_pred cCccchhhHHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999998755320 112223344567888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d 324 (554)
.. ..++++.+|||||||||.|||||+.+|++|+||||+.+||.-+++.+.++| +..|+.+++||||++++.-+++
T Consensus 123 ~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflat 201 (259)
T COG4525 123 EG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLAT 201 (259)
T ss_pred cc-ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhh
Confidence 74 458999999999999999999999999999999999999999988877765 5679999999999999999999
Q ss_pred eEEEeeC--Ceee
Q 008771 325 KIVETEM--GVSR 335 (554)
Q Consensus 325 ~i~~l~~--g~~~ 335 (554)
++++|.. |+++
T Consensus 202 rLvvlsp~pgRvv 214 (259)
T COG4525 202 RLVVLSPGPGRVV 214 (259)
T ss_pred eeEEecCCCceee
Confidence 9999975 5543
No 242
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=333.42 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=171.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-----ceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~~~~---------- 160 (554)
+.|+++|++++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3599999999998888999999999999999999999999999999999999985 8999887633
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++ .|+.||+...... .. ........++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~ 126 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKI---------------VG-----------------------WRPKLEIDDI 126 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-----------------------CCcHHHHHHH
Confidence 14999999988766 8999987532100 00 0000112334
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEE
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVI 311 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIi 311 (554)
+.++++.+++.. ...++++.+|||||+||++|||+|+.+|++|||||||++||+.++..+.+.|++ .+.|||+
T Consensus 127 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii 206 (261)
T PRK14258 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206 (261)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 566777777632 245788899999999999999999999999999999999999999999887753 4899999
Q ss_pred EecCHHHHHhhcceEEEeeC-----CeeeeccCChhHHH
Q 008771 312 ISHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQYV 345 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l~~-----g~~~~~~G~~~~~~ 345 (554)
||||++++.++||+|++|++ |++ .+.|...+..
T Consensus 207 vsH~~~~i~~~~d~i~~l~~~~~~~G~i-~~~~~~~~~~ 244 (261)
T PRK14258 207 VSHNLHQVSRLSDFTAFFKGNENRIGQL-VEFGLTKKIF 244 (261)
T ss_pred EECCHHHHHHhcCEEEEEccCCCcCceE-EEeCCHHHHH
Confidence 99999999999999999998 887 4557666543
No 243
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-40 Score=376.61 Aligned_cols=256 Identities=23% Similarity=0.353 Sum_probs=187.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC--CeeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+.+|+.+....+.+... .. ..+......|+++||+|+|+ ++++|+|+||+|++||+
T Consensus 407 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~--~~---~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~ 481 (686)
T TIGR03797 407 AVTQLSNTLISILAVIPLWERAKPILEALPEVDE--AK---TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF 481 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--Cc---CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCE
Confidence 3444455556677777778877665433322111 00 00111234599999999995 35799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+|+||||||||+|+|+|+++|++|+|.++|.+. .||||+|++.+ ++.|++||+..+-. ..
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~~~~~--~~---- 554 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-MSGSIFENIAGGAP--LT---- 554 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc-CcccHHHHHhcCCC--CC----
Confidence 999999999999999999999999999999998653 59999999988 56799999965310 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++...+ +.. .+...+..+-. |++... ......||||||||++|||||+
T Consensus 555 ~e~i~~al------------------------~~a---~l~~~i~~lp~--G~dt~i-ge~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 555 LDEAWEAA------------------------RMA---GLAEDIRAMPM--GMHTVI-SEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred HHHHHHHH------------------------HHc---CcHHHHHhccc--cccccc-cCCCCCCCHHHHHHHHHHHHHh
Confidence 00000000 000 11111222111 332221 2223689999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.+|++||||||||+||+.+.+.+.+.|++.++|+|+|||+++.+.. ||+|++|++|++. ..|++++.+..
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv-~~G~~~~Ll~~ 674 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVV-QQGTYDELMAR 674 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEE-EECCHHHHHhC
Confidence 9999999999999999999999999998888999999999999975 9999999999984 67888876553
No 244
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=334.29 Aligned_cols=208 Identities=18% Similarity=0.276 Sum_probs=166.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCCc---------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM--------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~~--------- 161 (554)
++|+++||+++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 46999999999998899999999999999999999999999999999999976 4899999987432
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.|+|++|++.+++ .|+.+|+....... . . .....++
T Consensus 89 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~------------------------~-~~~~~~~ 127 (264)
T PRK14243 89 VRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---------------G------------------------Y-KGDMDEL 127 (264)
T ss_pred HhhhEEEEccCCcccc-ccHHHHHHhhhhhc---------------C------------------------c-chHHHHH
Confidence 4999999987766 59999985421100 0 0 0001122
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+..+++.+++.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 128 ~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vt 207 (264)
T PRK14243 128 VERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVT 207 (264)
T ss_pred HHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333444444421 234678899999999999999999999999999999999999999999988753 258999999
Q ss_pred cCHHHHHhhcceEEEee---------CCeeeeccCChhHHH
Q 008771 314 HDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~---------~g~~~~~~G~~~~~~ 345 (554)
||++++.++||+|++|+ +|++ ...|...++.
T Consensus 208 H~~~~~~~~~d~v~~l~~~~~~~~~~~g~i-~~~~~~~~~~ 247 (264)
T PRK14243 208 HNMQQAARVSDMTAFFNVELTEGGGRYGYL-VEFDRTEKIF 247 (264)
T ss_pred cCHHHHHHhCCEEEEEecccccccccCceE-EEeCCHHHHH
Confidence 99999999999999998 6876 4556655543
No 245
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2e-40 Score=369.69 Aligned_cols=257 Identities=25% Similarity=0.335 Sum_probs=186.3
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEe-CCeeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~ 126 (554)
.+......+...+.+..+.+|+.+..+.+..... ... ...+......|+++||+|.| +++++|+|+||+|++|+++
T Consensus 303 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~~-~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~v 379 (588)
T PRK11174 303 PLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QGE-KELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRI 379 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCc-cccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEE
Confidence 4445555556678888888888776543321110 000 00000112359999999766 5678999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||||+||||||||+++|+|++ |++|+|.++|.+. .|+||+|++.+ ++.|++||+..+-.+ .. .
T Consensus 380 aIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L-F~~TI~eNI~~g~~~-~~----~ 452 (588)
T PRK11174 380 ALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-PHGTLRDNVLLGNPD-AS----D 452 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcC-CCcCHHHHhhcCCCC-CC----H
Confidence 999999999999999999999 9999999998643 59999999988 567999999754110 00 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
+++.+.++ . ..+.+.+..+ |++... ...-..||||||||++|||||
T Consensus 453 eei~~al~------------------------~-------a~l~~~i~~lp~G~dT~v-ge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 453 EQLQQALE------------------------N-------AWVSEFLPLLPQGLDTPI-GDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred HHHHHHHH------------------------H-------hCHHHHHHhccccccccc-ccCCCCCCHHHHHHHHHHHHH
Confidence 00000000 0 0111222222 443222 222457999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~ 348 (554)
+.+|++||||||||+||.++.+.+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++ ...|++++.+...
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i-~e~G~~~eL~~~~ 574 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQI-VQQGDYAELSQAG 574 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeE-eecCCHHHHHhcc
Confidence 999999999999999999999999888764 47999999999999965 999999999987 4678888776543
No 246
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-41 Score=329.24 Aligned_cols=210 Identities=26% Similarity=0.400 Sum_probs=163.9
Q ss_pred cEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
.|+++|++++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3799999999975 579999999999999999999999999999999999999999999998743 24999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++.. |+.+|+........ ...+... + + ...+..+++.
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~~~-----~~~~~~~--------------~----------~-------~~~l~~~~~~ 124 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPNAT-----DEEVIEA--------------A----------K-------EAGAHDFIMK 124 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCCCC-----HHHHHHH--------------H----------H-------HhChHHHHHh
Confidence 9999877554 99998753211000 0000000 0 0 0011222333
Q ss_pred c--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ |+.. ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|||+++++..
T Consensus 125 ~~~~~~~-~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 125 LPNGYDT-VLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred CcccccC-HhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3 4432 34667899999999999999999999999999999999999999999888754 47899999999999964
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|++|++|++. +.|+++++..
T Consensus 204 -~d~i~~l~~g~~~-~~~~~~~~~~ 226 (229)
T cd03254 204 -ADKILVLDDGKII-EEGTHDELLA 226 (229)
T ss_pred -CCEEEEEeCCeEE-EeCCHHHHHh
Confidence 9999999999974 5677666543
No 247
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=334.77 Aligned_cols=209 Identities=19% Similarity=0.259 Sum_probs=167.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
+++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 3579999999999988899999999999999999999999999999999999863 69999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|+||++.+++ .|+.+|+....... . . ....+.
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~---------------~------------------------~-~~~~~~ 136 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN---------------G------------------------Y-KGNLDE 136 (274)
T ss_pred HHhhcEEEEccCCcccc-ccHHHHHHhHHHhc---------------C------------------------c-hHHHHH
Confidence 25999999988765 49999885321000 0 0 000112
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
.+.++++.+++. .+..++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 216 (274)
T PRK14265 137 LVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMV 216 (274)
T ss_pred HHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 233344444442 1245678899999999999999999999999999999999999999999998864 36899999
Q ss_pred ecCHHHHHhhcceEEEee---------CCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~---------~g~~~~~~G~~~~~~ 345 (554)
|||++++.++||++++|+ +|++ +..|+..++.
T Consensus 217 sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~-~~~g~~~~~~ 257 (274)
T PRK14265 217 THNMQQASRVADWTAFFNTEIDEYGKRRGKL-VEFSPTEQMF 257 (274)
T ss_pred eCCHHHHHHhCCEEEEEecccccccccCceE-EEeCCHHHHH
Confidence 999999999999999997 7887 4557665543
No 248
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-40 Score=378.72 Aligned_cols=261 Identities=20% Similarity=0.326 Sum_probs=185.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhc--cccCCCCC-CCCCccEEEEeEEEEeCC--eeeEEceeEEEEC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYS--NKQSNTGA-SSISSGVKLENISKSYKG--VTVLKDVTWEVKK 122 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~ 122 (554)
.+......+..++.+..+++|+.+....+.+..... .......+ ......|+++||+|+|++ +++|+|+||+|++
T Consensus 425 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~ 504 (710)
T TIGR03796 425 PVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQP 504 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcC
Confidence 334444444556666777776655443322111100 00000000 122346999999999974 5799999999999
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHH
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 192 (554)
||++||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ ++.|++||+...-.+ ..
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTi~eNi~l~~~~-~~- 581 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL-FEGTVRDNLTLWDPT-IP- 581 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChh-hhccHHHHhhCCCCC-CC-
Confidence 999999999999999999999999999999999998653 59999999987 467999999642100 00
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHH
Q 008771 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272 (554)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 272 (554)
.+.+.+.+ +.. .+.+.+.++- .|++... ......||||||||++|||
T Consensus 582 ---~~~i~~al------------------------~~~---~l~~~i~~lp--~gl~t~i-~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 582 ---DADLVRAC------------------------KDA---AIHDVITSRP--GGYDAEL-AEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred ---HHHHHHHH------------------------HHh---CCHHHHHhCc--Cccccee-ccCCCCCCHHHHHHHHHHH
Confidence 00000000 000 0111111111 1333222 2234689999999999999
Q ss_pred HHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 273 aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+.+|++||||||||+||+.+.+.+.+.|++.++|+|+|||+++.+.. ||+|++|++|+++ ..|++++.++
T Consensus 629 all~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~-~~G~~~~Ll~ 700 (710)
T TIGR03796 629 ALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVV-QRGTHEELWA 700 (710)
T ss_pred HHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEE-EecCHHHHHH
Confidence 9999999999999999999999999999998889999999999999975 9999999999974 6688887654
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=336.54 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=168.1
Q ss_pred cEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEEEEec
Q 008771 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~~v~Q 168 (554)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+||
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 489999999995 5789999999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccc--cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 169 EFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 169 ~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
++.+. +..++.+++........ . .. .......+.++.++++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~--------------~------~~---------------~~~~~~~~~~~~~~l~~~ 130 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHM--------------G------WL---------------RRAKKRDRQIVTAALARV 130 (272)
T ss_pred ccccccCCCcchhhheeccccccc--------------c------cc---------------cCCCHHHHHHHHHHHHHc
Confidence 98653 23356666532100000 0 00 000011234567788889
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||++++..+|
T Consensus 131 gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~ 209 (272)
T PRK15056 131 DMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209 (272)
T ss_pred CCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 986 456889999999999999999999999999999999999999999999988753 4889999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+++++ +|++. +.|+.++.
T Consensus 210 d~v~~~-~G~i~-~~g~~~~~ 228 (272)
T PRK15056 210 DYTVMV-KGTVL-ASGPTETT 228 (272)
T ss_pred CEEEEE-CCEEE-eecCHHhc
Confidence 999877 78864 55665543
No 250
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=314.08 Aligned_cols=160 Identities=36% Similarity=0.579 Sum_probs=145.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|++++|++.++|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 478999999988889999999999999999999999999999999999999999999998743 25899999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+
T Consensus 81 ~~~~~~~~tv~~~~------------------------------------------------------------------ 94 (173)
T cd03230 81 EPSLYENLTVRENL------------------------------------------------------------------ 94 (173)
T ss_pred CCccccCCcHHHHh------------------------------------------------------------------
Confidence 98887777876552
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcce
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~ 325 (554)
.|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .|.|+|++|||++++..+||+
T Consensus 95 ----------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 95 ----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred ----------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 0999999999999999999999999999999999999999888753 478999999999999999999
Q ss_pred EEEeeCCe
Q 008771 326 IVETEMGV 333 (554)
Q Consensus 326 i~~l~~g~ 333 (554)
|++|++|+
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 99999885
No 251
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-40 Score=365.24 Aligned_cols=209 Identities=31% Similarity=0.446 Sum_probs=174.9
Q ss_pred CccEEEEeEEEEeC-----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc-CC---------
Q 008771 95 SSGVKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KS--------- 159 (554)
Q Consensus 95 ~~~i~~~~ls~~y~-----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-~~--------- 159 (554)
.++|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 45799999999994 2579999999999999999999999999999999999999999999984 31
Q ss_pred -------CceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 160 -------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 160 -------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
..+|+|+||++.+++..||.+|+...+. + ....
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~-------------------------~~~~ 396 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG---------------L-------------------------ELPD 396 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH---------------c-------------------------CCCH
Confidence 1249999999888888999999853210 0 0000
Q ss_pred ccHHHHHHHHhhhcCCCc----cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----c
Q 008771 233 DTLDAKVSKLMPELGFTA----DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~----~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~ 304 (554)
...+.++.++++.+||.. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +
T Consensus 397 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred HHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 112345778889999964 24689999999999999999999999999999999999999999999988874 3
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.|.|||+||||++++.++||+|++|++|++. +.|..++.
T Consensus 477 ~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 515 (520)
T TIGR03269 477 MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDPEEI 515 (520)
T ss_pred cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 5899999999999999999999999999874 55665443
No 252
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=329.20 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=164.9
Q ss_pred EEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|++++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999765 79999999999999999999999999999999999999999999998743 24999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++. .|+.||+....... ....+. ... ....+.++++.
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~-------------------~~~~~~----------~~~-------~~~~~~~~~~~ 123 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGA-------------------TREEVE----------EAA-------RAANAHEFIME 123 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCC-------------------CHHHHH----------HHH-------HHcCcHHHHHh
Confidence 999987764 69999985421100 000000 000 00012333444
Q ss_pred c--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ |+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||++|||++++..
T Consensus 124 l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 124 LPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4 454 345677899999999999999999999999999999999999999999988754 48899999999999976
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. ..|+..++.
T Consensus 203 -~d~v~~l~~G~i~-~~~~~~~~~ 224 (234)
T cd03251 203 -ADRIVVLEDGKIV-ERGTHEELL 224 (234)
T ss_pred -CCEEEEecCCeEe-eeCCHHHHH
Confidence 9999999999874 566665543
No 253
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.5e-40 Score=328.94 Aligned_cols=209 Identities=25% Similarity=0.419 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 579999999999999999999999999999999999999999999998853 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.++ ..||.+|+...... .. ...+. ...+ ...+.+++..
T Consensus 81 ~~q~~~~~-~~tv~~nl~~~~~~-~~----~~~~~------------------------~~~~-------~~~~~~~l~~ 123 (237)
T cd03252 81 VLQENVLF-NRSIRDNIALADPG-MS----MERVI------------------------EAAK-------LAGAHDFISE 123 (237)
T ss_pred EcCCchhc-cchHHHHhhccCCC-CC----HHHHH------------------------HHHH-------HcCcHHHHHh
Confidence 99998765 56999998532100 00 00000 0000 0012233444
Q ss_pred c--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ ++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||++|||++++.
T Consensus 124 l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~- 201 (237)
T cd03252 124 LPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK- 201 (237)
T ss_pred Cccccc-chhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence 4 443 234678899999999999999999999999999999999999999999888753 3789999999999996
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.||+|++|++|++. +.|+..++..
T Consensus 202 ~~d~v~~l~~G~i~-~~~~~~~~~~ 225 (237)
T cd03252 202 NADRIIVMEKGRIV-EQGSHDELLA 225 (237)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 59999999999874 5576665443
No 254
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-40 Score=322.57 Aligned_cols=189 Identities=21% Similarity=0.311 Sum_probs=162.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------eEEEEecc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQE 169 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------~i~~v~Q~ 169 (554)
+|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 58999999999988899999999999999999999999999999999999999999999987542 48999998
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+..... ... ..+.++.++++.+|+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~-----------------------------------------~~~--~~~~~~~~~l~~~~l~ 118 (207)
T PRK13539 82 NAMKPALTVAENLEFWAA-----------------------------------------FLG--GEELDIAAALEAVGLA 118 (207)
T ss_pred CcCCCCCcHHHHHHHHHH-----------------------------------------hcC--CcHHHHHHHHHHcCCH
Confidence 877778899998742100 000 0123467788889986
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceE
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i 326 (554)
. ..++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|+|+||||++++.. |++
T Consensus 119 ~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 119 P-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred H-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcE
Confidence 4 56888999999999999999999999999999999999999999999888753 48999999999999986 999
Q ss_pred EEeeC
Q 008771 327 VETEM 331 (554)
Q Consensus 327 ~~l~~ 331 (554)
+.++.
T Consensus 196 ~~~~~ 200 (207)
T PRK13539 196 LDLGP 200 (207)
T ss_pred EeecC
Confidence 88754
No 255
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-40 Score=342.70 Aligned_cols=244 Identities=23% Similarity=0.362 Sum_probs=180.5
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCee-eEEceeEEEECCCEEEEECCCCcc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAG 135 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~~-~l~~isl~i~~Ge~~~lvG~NGsG 135 (554)
..+.++..++..++.....+...+.. ..+.......|+++||+++|++++ +|+++||+|++||++||||+||||
T Consensus 316 r~~~q~l~Dm~~~~~l~~~~~~i~~~-----~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsG 390 (591)
T KOG0057|consen 316 RELRQALTDMRTLFILLEVDEDIQEA-----ALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSG 390 (591)
T ss_pred HHHHHHHHhHHHHHhhhhhhhhhhhc-----cCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCC
Confidence 44666666777666654333222211 111123345599999999998765 999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 008771 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205 (554)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (554)
|||++|+|.+++. ++|+|.++|.++ .|||||||..+ |+.||..|+..+-..
T Consensus 391 KSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~L-FndTIl~NI~YGn~s----------------- 451 (591)
T KOG0057|consen 391 KSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVL-FNDTILYNIKYGNPS----------------- 451 (591)
T ss_pred HHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccc-cchhHHHHhhcCCCC-----------------
Confidence 9999999999999 999999999764 49999999887 667999999754210
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
..+++....+...+. .+....+ |..... ......|||||||||+||||++.+|+|++|
T Consensus 452 ------------as~eeV~e~~k~a~~-------hd~i~~l~~GY~T~V-GerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 452 ------------ASDEEVVEACKRAGL-------HDVISRLPDGYQTLV-GERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred ------------cCHHHHHHHHHHcCc-------HHHHHhccccchhhH-hhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 001111111111111 1111122 211111 112247999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 284 DEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|||||+||.++...+.+.+.+ .++|+|+|-||++.+.. ||+|+++++|++..+ |+.++.+.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-gth~ell~ 574 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-GTHSELLA 574 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-ccHHHHhh
Confidence 999999999999999998865 58999999999999976 999999999998655 77777666
No 256
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4e-40 Score=367.41 Aligned_cols=255 Identities=20% Similarity=0.277 Sum_probs=186.3
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~ 126 (554)
.+......+..++.+..+.+++.+..+.+...... .. .......|+++|++|+|++ .++|+|+||+|++||++
T Consensus 297 pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~----~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~i 370 (592)
T PRK10790 297 PLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN--DD----RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFV 370 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC--Cc----cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEE
Confidence 34444455566777788888877765433211100 00 0112245999999999964 57999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .|+++|+...- + .. .
T Consensus 371 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~-~-~~----d 443 (592)
T PRK10790 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGR-D-IS----E 443 (592)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCC-C-CC----H
Confidence 99999999999999999999999999999998643 5999999998854 59999996431 0 00 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+++.. .++.. .+.+.+.++-+ |++... ......||||||||++|||||+.
T Consensus 444 ~~i~~------------------------a~~~~---gl~~~i~~lp~--Gldt~i-~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 444 EQVWQ------------------------ALETV---QLAELARSLPD--GLYTPL-GEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HHHHH------------------------HHHHc---CcHHHHHhccc--cccccc-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 00000 00000 11112222111 333222 22346899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++|||||||++||+++.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|++. ..|++++.++.
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~-~~G~~~~L~~~ 564 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-ADTILVLHRGQAV-EQGTHQQLLAA 564 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEEECCEEE-EEcCHHHHHhC
Confidence 9999999999999999999999888864 47999999999999875 9999999999984 67888877654
No 257
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.1e-40 Score=328.43 Aligned_cols=185 Identities=29% Similarity=0.409 Sum_probs=156.6
Q ss_pred EEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----eEEEEecccccccCccHHHHHHHhhH
Q 008771 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFK 187 (554)
Q Consensus 113 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----~i~~v~Q~~~~~~~~tv~e~~~~~~~ 187 (554)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. ..+|++|++.+++..||.+|+...+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999987532 35899999988888899999853210
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHH
Q 008771 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (554)
.. . ..........++.++++.+|+. ...++++.+||||||||
T Consensus 81 ~~-------------~------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qr 122 (230)
T TIGR01184 81 RV-------------L------------------------PDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQR 122 (230)
T ss_pred hc-------------c------------------------cCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHH
Confidence 00 0 0001112234567888999996 56688899999999999
Q ss_pred HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
|+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++.++||+|++|++|++.
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 9999999999999999999999999999999887753 4889999999999999999999999999875
No 258
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-40 Score=320.28 Aligned_cols=185 Identities=21% Similarity=0.331 Sum_probs=159.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~ 167 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 37899999999988999999999999999999999999999999999999999999999988542 599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..||.+|+..... .. ..+.++.++++.++
T Consensus 81 q~~~~~~~~tv~~~~~~~~~------------------------------------------~~--~~~~~~~~~l~~~~ 116 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIH------------------------------------------FS--PGAVGITELCRLFS 116 (200)
T ss_pred cccccCcCCCHHHHHHHHHh------------------------------------------cC--cchHHHHHHHHHcC
Confidence 99888788999998753210 00 01234667788888
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d 324 (554)
+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|+|||+..++.. ||
T Consensus 117 l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d 194 (200)
T PRK13540 117 LE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-AD 194 (200)
T ss_pred Cc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cc
Confidence 86 355788899999999999999999999999999999999999999999988763 58899999999999976 88
Q ss_pred eEE
Q 008771 325 KIV 327 (554)
Q Consensus 325 ~i~ 327 (554)
.-+
T Consensus 195 ~~~ 197 (200)
T PRK13540 195 YEE 197 (200)
T ss_pred hhh
Confidence 654
No 259
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-40 Score=330.30 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=168.2
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
...|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 3569999999999988999999999999999999999999999999999999875 79999997632
Q ss_pred -----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
..|+|++|++.+++. |+.+|+....... . .. .....
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---------------~-~~----------------------~~~~~ 134 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---------------G-VK----------------------RRSIL 134 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---------------C-CC----------------------hHHHH
Confidence 248999999888765 9999985321100 0 00 00011
Q ss_pred HHHHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 008771 236 DAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (554)
Q Consensus 236 ~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvI 310 (554)
++++..+++.+++. ....++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tii 214 (265)
T PRK14252 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTIL 214 (265)
T ss_pred HHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEE
Confidence 23344455555542 1234677899999999999999999999999999999999999999999888753 368999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||||++++.++||+|++|++|++.. .|+..++
T Consensus 215 ivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 247 (265)
T PRK14252 215 IVTHNMQQAARVSDYTAYMYMGELIE-FGATDTI 247 (265)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999854 4555443
No 260
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=314.20 Aligned_cols=162 Identities=39% Similarity=0.585 Sum_probs=146.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------ceEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------~~i~~ 165 (554)
|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 478999999988889999999999999999999999999999999999999999999987732 25899
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..|+.+|+.
T Consensus 81 ~~q~~~~~~~~t~~~~l~-------------------------------------------------------------- 98 (178)
T cd03229 81 VFQDFALFPHLTVLENIA-------------------------------------------------------------- 98 (178)
T ss_pred EecCCccCCCCCHHHhee--------------------------------------------------------------
Confidence 999988777778877641
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~l~~ 321 (554)
+ .|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ . +.|+|+||||++++..
T Consensus 99 --~----------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 --L----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred --e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 0 0999999999999999999999999999999999999999888753 3 7899999999999999
Q ss_pred hcceEEEeeCCe
Q 008771 322 LCTKIVETEMGV 333 (554)
Q Consensus 322 ~~d~i~~l~~g~ 333 (554)
+||+|++|++|+
T Consensus 167 ~~d~i~~l~~g~ 178 (178)
T cd03229 167 LADRVVVLRDGK 178 (178)
T ss_pred hcCEEEEEeCCC
Confidence 999999998873
No 261
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-40 Score=327.71 Aligned_cols=208 Identities=19% Similarity=0.325 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~----------- 160 (554)
+|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+.. |++|+|.++|.+
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4899999999998889999999999999999999999999999999999864 489999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..++|+||++.+++ .|+.+|+...+... . .......++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14266 83 RKKVGMVFQKPNPFP-KSIFDNVAYGLRIH---------------G-----------------------EDDEDFIEERV 123 (250)
T ss_pred hhheEEEecCCccCc-chHHHHHHhHHhhc---------------C-----------------------CCCHHHHHHHH
Confidence 24999999988766 49999885321100 0 00001123455
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+|+.. ...++++..|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh 203 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 66666666632 234778899999999999999999999999999999999999999999888753 4789999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. +.|+.+++
T Consensus 204 ~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14266 204 NMQQATRVSKYTSFFLNGEII-ESGLTDQI 232 (250)
T ss_pred CHHHHHhhcCEEEEEECCeEE-EeCCHHHH
Confidence 999999999999999999874 56776654
No 262
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.6e-40 Score=325.76 Aligned_cols=196 Identities=29% Similarity=0.388 Sum_probs=162.3
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
+.++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|... .+..+...+++..|
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~--~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS--SLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc--hhhcccccCCCCCc
Confidence 7899999999999999999999999999999999999999999999999999999999987532 22223344556789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
|.+|+...... . .........++.++++.+|+. ...++++
T Consensus 101 v~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 140 (224)
T cd03220 101 GRENIYLNGRL---------------L------------------------GLSRKEIDEKIDEIIEFSELG-DFIDLPV 140 (224)
T ss_pred HHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-hhhhCCh
Confidence 99987532100 0 000112234566778888885 4568889
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||++++..+||+|++|++|++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999888887643 478999999999999999999999999987
Q ss_pred e
Q 008771 335 R 335 (554)
Q Consensus 335 ~ 335 (554)
.
T Consensus 221 ~ 221 (224)
T cd03220 221 R 221 (224)
T ss_pred E
Confidence 4
No 263
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-40 Score=336.06 Aligned_cols=224 Identities=20% Similarity=0.309 Sum_probs=174.2
Q ss_pred CCCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC-------
Q 008771 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~------- 160 (554)
..+.+|.++||+++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 44567999999999998899999999999999999999999999999999999986 689999998742
Q ss_pred -----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC-ccc
Q 008771 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LDT 234 (554)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (554)
..|+|++|++.+++ .||.+|+...+..... ... ......+ ... ...
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~-----------~~~-----~~~~~~~-----------~~~~~~~ 172 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGD-----------INT-----GLLARLL-----------GRDDKDA 172 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhccc-----------ccc-----ccccccc-----------ccCchHH
Confidence 25999999987765 5999998643210000 000 0000000 000 011
Q ss_pred HHHHHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeE
Q 008771 235 LDAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPM 309 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tv 309 (554)
..+.+.++++.+++.. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..|.++|++. +.||
T Consensus 173 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~ti 252 (305)
T PRK14264 173 EDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTV 252 (305)
T ss_pred HHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEE
Confidence 2345677788887742 3457788999999999999999999999999999999999999999998887642 5899
Q ss_pred EEEecCHHHHHhhcceE-EEeeCCeeeeccCChhHHH
Q 008771 310 VIISHDRAFLDQLCTKI-VETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i-~~l~~g~~~~~~G~~~~~~ 345 (554)
|+||||++++..+||+| ++|++|++. ..|+.+++.
T Consensus 253 iivtH~~~~i~~~~d~i~~~l~~G~i~-~~g~~~~~~ 288 (305)
T PRK14264 253 VVVTHNMQQAARISDQTAVFLTGGELV-EYDDTDKIF 288 (305)
T ss_pred EEEEcCHHHHHHhcCEEEEEecCCEEE-EeCCHHHHH
Confidence 99999999999999997 567999874 456665543
No 264
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-41 Score=347.24 Aligned_cols=241 Identities=24% Similarity=0.369 Sum_probs=181.1
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGA 134 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGs 134 (554)
..+.....++.|+-+.+..+++.... +. ..+... ..++++||+|+|++. ++|+|+||++++||++||+|++||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~---~~~~~~-~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGs 375 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFP-DE---QTATTG-QALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGS 375 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCC-cc---ccCCcc-ceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCC
Confidence 45566666777777766665433221 11 111111 269999999999765 599999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHH--HHHHHHHHHHHHHH
Q 008771 135 GKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKA 202 (554)
Q Consensus 135 GKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~--~~~~~~~~~~~~~~ 202 (554)
|||||+++|+|.++|++|+|.++|.+. .|++++|.+.+ |+.|+++|+..+-.+ ..++...++
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl-F~~Tlr~NL~lA~~~AsDEel~~aL~----- 449 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASDEELWAALQ----- 449 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH-HHHHHHHHHhhcCCCCCHHHHHHHHH-----
Confidence 999999999999999999999998542 58999999988 667999998754211 001111111
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHHHHhCCccc----HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC
Q 008771 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT----LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278 (554)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p 278 (554)
.++..+ .++..+..+. ..-..|||||+||++|||+|+++.
T Consensus 450 --------------------------qvgL~~l~~~~p~gl~t~lg----------e~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 450 --------------------------QVGLEKLLESAPDGLNTWLG----------EGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred --------------------------HcCHHHHHHhChhhhhchhc----------cCCCcCCchHHHHHHHHHHHHcCC
Confidence 011000 1111222222 223689999999999999999999
Q ss_pred CeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 279 DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 279 ~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+++||||||.|||+.+.+.+.+.+.+ .|+|+|+|||++..++. ||+|++|++|++ +..|+|.+.+.
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gki-ie~G~~~~Ll~ 561 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKI-IEEGTHAELLA 561 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCee-eecCCHHhhhc
Confidence 99999999999999999999988754 58999999999999975 999999999997 56788887766
No 265
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.2e-40 Score=308.62 Aligned_cols=163 Identities=26% Similarity=0.443 Sum_probs=146.5
Q ss_pred EEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 98 i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+ +..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYL-PLG 78 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCcc-ccc
Confidence 47899999996 467999999999999999999999999999999999999999999999864 579999999875 456
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
|+.+|+.. + .
T Consensus 79 tv~~nl~~--------------------------------------------------------------~--------~ 88 (166)
T cd03223 79 TLREQLIY--------------------------------------------------------------P--------W 88 (166)
T ss_pred cHHHHhhc--------------------------------------------------------------c--------C
Confidence 88887520 0 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
+.+||||||||++|||||+.+|++|||||||++||+.+++++.+.+++.+.|+|++|||++++ .+||+|++|+++.
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 468999999999999999999999999999999999999999999988889999999999876 5899999998763
No 266
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.4e-40 Score=325.09 Aligned_cols=200 Identities=23% Similarity=0.428 Sum_probs=161.3
Q ss_pred CccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------c
Q 008771 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------M 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~ 161 (554)
.++|+++|++++|++ .++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 356999999999974 369999999999999999999999999999999999999999999998853 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|++|++.+++ .||.+|+....... .. .+ +... .....+.+
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~~-------------------~~-------~~---~~~~-------~~~~~~~~ 131 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQSC-------------------SF-------EC---VKEA-------AQKAHAHS 131 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCCC-------------------CH-------HH---HHHH-------HHHcCcHH
Confidence 5999999987754 69999875321100 00 00 0000 00112345
Q ss_pred Hhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 008771 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~ 317 (554)
+++.+ |+.. ..++++.+|||||+|||+|||||+.+|++|||||||++||+.+++++.+++++ .+.|+|+||||++
T Consensus 132 ~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 210 (226)
T cd03248 132 FISELASGYDT-EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS 210 (226)
T ss_pred HHHhccccccc-hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 56666 6653 45778999999999999999999999999999999999999999999888753 3689999999999
Q ss_pred HHHhhcceEEEeeCCe
Q 008771 318 FLDQLCTKIVETEMGV 333 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~ 333 (554)
++.. ||+|++|++|+
T Consensus 211 ~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 211 TVER-ADQILVLDGGR 225 (226)
T ss_pred HHHh-CCEEEEecCCc
Confidence 9965 99999999885
No 267
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.3e-40 Score=372.55 Aligned_cols=257 Identities=22% Similarity=0.337 Sum_probs=185.5
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+.........++.+..+.+|+++..+.+++.... ....+......|+++||+|+|++ +++|+|+||+|++||
T Consensus 433 ~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~----~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge 508 (711)
T TIGR00958 433 AVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT----GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC----CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCC
Confidence 34444455566788888888887765443221110 00011122346999999999964 469999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ ++.|++||+..+.....
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-F~gTIreNI~~g~~~~~---- 583 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL-FSGSVRENIAYGLTDTP---- 583 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccc-cccCHHHHHhcCCCCCC----
Confidence 9999999999999999999999999999999998642 59999999987 56799999974321000
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
.+.+.+. ++..+ +...+.++-+ |++.. ......+||||||||++|||||
T Consensus 584 -~e~i~~a------------------------l~~a~---l~~~i~~lp~--GldT~-ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 584 -DEEIMAA------------------------AKAAN---AHDFIMEFPN--GYDTE-VGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred -HHHHHHH------------------------HHHcC---CHHHHHhCCC--ccCCc-ccCCCCcCCHHHHHHHHHHHHH
Confidence 0000000 00001 1111111111 33322 2223468999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+++|+||||||||++||+++.+.+.+.....++|+|+|||+++.+. .||+|++|++|++. ..|++++.+.
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~iv-e~Gt~~eL~~ 702 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVV-EMGTHKQLME 702 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEE-EeeCHHHHHh
Confidence 9999999999999999999999998844446899999999999986 49999999999874 5688776554
No 268
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.4e-40 Score=326.56 Aligned_cols=207 Identities=24% Similarity=0.401 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEE
Q 008771 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (554)
Q Consensus 98 i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~ 164 (554)
|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 469999999999999999999999999999999999999999999998743 2499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.++. .||.+|+........ .+.+... .. .. .+.+++.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~~-----~~~~~~~------------------------~~---~~----~~~~~~~ 123 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDAT-----DEEVEEA------------------------AK---KA----NIHDFIM 123 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCCC-----HHHHHHH------------------------HH---Hc----ChHHHHH
Confidence 9999987754 699998853211000 0000000 00 00 1122222
Q ss_pred hc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 008771 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~ 320 (554)
.+ |+. ...++.+.+|||||+|||+||+||+.+|++|||||||++||+.+++.+.+.|++ .|.|||++|||++++.
T Consensus 124 ~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 124 SLPDGYD-TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred hhccccc-eeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 22 332 234677899999999999999999999999999999999999999999988753 5789999999999997
Q ss_pred hhcceEEEeeCCeeeeccCChhHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.||+|++|++|++ .+.|+..++
T Consensus 203 -~~d~v~~l~~G~i-~~~~~~~~~ 224 (238)
T cd03249 203 -NADLIAVLQNGQV-VEQGTHDEL 224 (238)
T ss_pred -hCCEEEEEECCEE-EEeCCHHHH
Confidence 8999999999987 455665544
No 269
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.7e-40 Score=371.79 Aligned_cols=258 Identities=23% Similarity=0.350 Sum_probs=185.2
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+.+++.+..+++|+.+..+.+.+.... ............|+++||+|+|++ +++|+|+||+|++||+
T Consensus 417 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~ 493 (694)
T TIGR03375 417 PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEK 493 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCE
Confidence 44445555566777777777776654433221110 000001122345999999999964 5699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.++ +.|++||+...-.+ ..
T Consensus 494 iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf-~~TI~eNi~~~~~~-~~---- 567 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF-YGTLRDNIALGAPY-AD---- 567 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhh-hhhHHHHHhCCCCC-CC----
Confidence 999999999999999999999999999999998542 699999999874 56999999643110 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++.+.+ +.. .+...+..+- .|++... ......||||||||++|||||+
T Consensus 568 ~~~i~~a~------------------------~~~---~l~~~i~~lp--~gl~T~i-~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 568 DEEILRAA------------------------ELA---GVTEFVRRHP--DGLDMQI-GERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred HHHHHHHH------------------------HHc---ChHHHHHhCc--cccccee-cCCCCCCCHHHHHHHHHHHHHh
Confidence 00000000 000 1111122111 1333222 2334689999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+|++|||||||++||+.+.+.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++. ..|++++.+.
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~-e~G~~~eLl~ 688 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV-ADGPKDQVLE 688 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEE-eeCCHHHHHH
Confidence 99999999999999999999999988864 4799999999999985 69999999999984 5688776554
No 270
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.1e-40 Score=368.37 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=174.9
Q ss_pred CccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
.++|+++||++.|++ ..+|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.+++ ..+|||++|++.
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-~~~igyv~Q~~~-- 582 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-KVRMAVFSQHHV-- 582 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-ceeEEEEecccc--
Confidence 357999999999964 5699999999999999999999999999999999999999999999875 457999999862
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
...++.++....+. . ... ...+.++..+|..+|+.....
T Consensus 583 ~~l~~~~~~~~~~~-------------------------------------~---~~~-~~~~~~i~~~L~~~gl~~~~~ 621 (718)
T PLN03073 583 DGLDLSSNPLLYMM-------------------------------------R---CFP-GVPEQKLRAHLGSFGVTGNLA 621 (718)
T ss_pred ccCCcchhHHHHHH-------------------------------------H---hcC-CCCHHHHHHHHHHCCCChHHh
Confidence 22344333211000 0 000 011356778899999975567
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
++++.+|||||||||+||+||+.+|++|||||||||||+.++++|.+.|.++++|||+||||+.++..+||+|++|++|+
T Consensus 622 ~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 622 LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999999998766799999999999999999999999999
Q ss_pred eeeccCChhHHHH
Q 008771 334 SRTYEGNYSQYVL 346 (554)
Q Consensus 334 ~~~~~G~~~~~~~ 346 (554)
+..+.|+|++|..
T Consensus 702 i~~~~g~~~~~~~ 714 (718)
T PLN03073 702 VTPFHGTFHDYKK 714 (718)
T ss_pred EEEeCCCHHHHHH
Confidence 8779999988754
No 271
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-40 Score=336.99 Aligned_cols=211 Identities=21% Similarity=0.327 Sum_probs=168.6
Q ss_pred CccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCCc------
Q 008771 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------ 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~~------ 161 (554)
...|+++|++++|. ..++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 45799999999995 3579999999999999999999999999999999999986 5799999987542
Q ss_pred ------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 162 ------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
.++|+||++.++ ..|+++|+...... .. ..+ .+..
T Consensus 158 ~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~---------------~~-~~~----------------------~~~~ 198 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRN---------------NG-IND----------------------RKIL 198 (329)
T ss_pred hHhhhccEEEEecCCccC-CCcHHHHHHhHHHh---------------cC-CCh----------------------HHHH
Confidence 599999999875 57999998632100 00 000 0011
Q ss_pred HHHHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 008771 236 DAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvI 310 (554)
++.+..+++.+++.. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .+.|+|
T Consensus 199 ~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii 278 (329)
T PRK14257 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSII 278 (329)
T ss_pred HHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEE
Confidence 223444555555421 234677899999999999999999999999999999999999999998887753 368999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|||+++++.++||+|++|++|++. ..|...+..
T Consensus 279 ~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~ 312 (329)
T PRK14257 279 IVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF 312 (329)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999985 457666543
No 272
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.7e-40 Score=363.65 Aligned_cols=251 Identities=25% Similarity=0.365 Sum_probs=181.2
Q ss_pred hhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECC
Q 008771 54 VEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGV 131 (554)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~ 131 (554)
..+...+.+..+.+|+.+..+.+++... +.........+.|+++||+|+|++ +++|+|+||+|++||+++|+|+
T Consensus 299 ~~~~~~~~~~~s~~ri~~ll~~~~~~~~----~~~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~ 374 (574)
T PRK11160 299 GAFQHLGQVIASARRINEITEQKPEVTF----PTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGR 374 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC----CcccCCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECC
Confidence 3345567777777887665543322110 000001112346999999999964 4699999999999999999999
Q ss_pred CCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHH
Q 008771 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201 (554)
Q Consensus 132 NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~ 201 (554)
||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.++ +.|++||+..+..+. ..+.+..
T Consensus 375 sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~~-----~~~~i~~ 448 (574)
T PRK11160 375 TGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF-SATLRDNLLLAAPNA-----SDEALIE 448 (574)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhh-cccHHHHhhcCCCcc-----CHHHHHH
Confidence 999999999999999999999999998642 499999999875 569999986432100 0000000
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeE
Q 008771 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (554)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lL 281 (554)
.+ +..+ +...+.+ --|++.. .......||||||||++|||||+.+|++|
T Consensus 449 al------------------------~~~~---l~~~i~~---p~GldT~-vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 449 VL------------------------QQVG---LEKLLED---DKGLNAW-LGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred HH------------------------HHcC---CHHHHcC---ccccCch-hcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 00 0000 1111111 1122221 12235689999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 282 lLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||||||++||+.+.+.+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++. ..|++++.+..
T Consensus 498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 563 (574)
T PRK11160 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQII-EQGTHQELLAQ 563 (574)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEE-EeCCHHHHHhc
Confidence 99999999999999999988864 47899999999999975 9999999999984 56888776543
No 273
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.6e-40 Score=362.71 Aligned_cols=212 Identities=23% Similarity=0.400 Sum_probs=175.3
Q ss_pred CccEEEEeEEEEeC-----------CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---
Q 008771 95 SSGVKLENISKSYK-----------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~-----------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--- 160 (554)
.++|+++|+++.|+ ++.+|+||||+|++||++||+|+||||||||+|+|+|+++ ++|+|.++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 45799999999995 3579999999999999999999999999999999999994 89999998732
Q ss_pred ----------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Q 008771 161 ----------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (554)
Q Consensus 161 ----------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (554)
..|+|+||++. +++..||.+|+...+.. .. .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~---------------~~----------------------~ 394 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV---------------HQ----------------------P 394 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh---------------cc----------------------c
Confidence 24899999973 66778999998532100 00 0
Q ss_pred hCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----c
Q 008771 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (554)
Q Consensus 229 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~ 304 (554)
.......+.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 001112345677889999996445789999999999999999999999999999999999999999999988875 2
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.|.|||+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 514 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGDCERVF 514 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcCHHHHh
Confidence 4899999999999999999999999999874 556665543
No 274
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.2e-40 Score=365.36 Aligned_cols=258 Identities=20% Similarity=0.341 Sum_probs=183.2
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.++.+.+|+.+..+.+.+.... ... . ......|+++||+|+|++ +++|+|+||+|++|++
T Consensus 297 pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~-~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 371 (582)
T PRK11176 297 PLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRV-I--ERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcC-C--CCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCE
Confidence 34444444455677777777766654332211100 000 0 012235999999999964 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.++ +.|+++|+..+..+...
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~~~~---- 446 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-NDTIANNIAYARTEQYS---- 446 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee-cchHHHHHhcCCCCCCC----
Confidence 999999999999999999999999999999998642 599999999874 57999999753110000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++...+ +.. .+.+.+.++- -|++... ...-..||||||||++|||||+
T Consensus 447 ~~~i~~al------------------------~~~---~l~~~i~~lp--~Gldt~i-g~~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 447 REQIEEAA------------------------RMA---YAMDFINKMD--NGLDTVI-GENGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred HHHHHHHH------------------------HHh---CcHHHHHhcc--cccCcee-CCCCCcCCHHHHHHHHHHHHHH
Confidence 00000000 000 0111111111 1333222 2223679999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.+|++|||||||++||+++...+.+.+.+ .++|+|+|||+++.+. .||+|++|++|++. ..|++++.++.
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~-e~g~~~~l~~~ 568 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIV-ERGTHAELLAQ 568 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EeCCHHHHHhC
Confidence 99999999999999999999999888764 4799999999999886 59999999999974 56888776554
No 275
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-40 Score=346.86 Aligned_cols=249 Identities=26% Similarity=0.372 Sum_probs=178.2
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCcc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAG 135 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsG 135 (554)
...+.+.++.+.++...+.+......... .......+..++++|+++.|++. ++++|+||++++|+.++|||+||||
T Consensus 282 H~~~~g~aa~d~i~~~l~~~~~~~~~~~~--~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaG 359 (559)
T COG4988 282 HAAAAGEAAADKLFTLLESPVATPGSGEK--AEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAG 359 (559)
T ss_pred HHHhhhhhHHHHHHHHhcCCCCCCCCccc--cccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCC
Confidence 34555566666666655544321111000 00111122335566999999754 8999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 008771 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205 (554)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (554)
||||+++|+|+.+|++|+|.++|.+. +|+||+|+|.+ +..|++||+..+-... ..+.+.+.++
T Consensus 360 KSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l-f~gTireNi~l~~~~~-----s~e~i~~al~- 432 (559)
T COG4988 360 KSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL-FAGTIRENILLARPDA-----SDEEIIAALD- 432 (559)
T ss_pred HHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc-ccccHHHHhhccCCcC-----CHHHHHHHHH-
Confidence 99999999999999999999998642 59999999988 5669999996532100 0000000000
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh-cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeec
Q 008771 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE-LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (554)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLD 284 (554)
...+.++++. -|++.. ....-..|||||+|||+|||||+.+++++|||
T Consensus 433 ------------------------------~a~l~~~v~~p~GLdt~-ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 433 ------------------------------QAGLLEFVPKPDGLDTV-IGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred ------------------------------HhcHHHhhcCCCcccch-hccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 0011111121 233221 12223579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 285 EPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 285 EPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
|||+|||.++.+.+.+.|.+ .++|+|+|||++..+.. ||+|++|++|++ ...|++++..+.
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l-~~~g~~~~L~~~ 544 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL-VEQGTHEELSEK 544 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCce-eccCCHHHHhhc
Confidence 99999999999999888754 57999999999999976 999999999997 567888776554
No 276
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.9e-40 Score=318.00 Aligned_cols=185 Identities=25% Similarity=0.358 Sum_probs=157.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|+++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 478999999999999999999999999999999999999999999999999999999998854 35899999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+..... ... .. +.++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~-----------------------------------------~~~-~~-~~~~~~~l~~~~l 117 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAA-----------------------------------------IHG-GA-QRTIEDALAAVGL 117 (198)
T ss_pred CcccccCCcHHHHHHHHHH-----------------------------------------HcC-Cc-HHHHHHHHHHcCC
Confidence 9888777899998752110 000 01 2356677888888
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcce
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~ 325 (554)
. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+...+ .|++
T Consensus 118 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~ 194 (198)
T TIGR01189 118 T-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEAR 194 (198)
T ss_pred H-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceE
Confidence 6 456888999999999999999999999999999999999999999999888753 488999999998665 3677
Q ss_pred EEE
Q 008771 326 IVE 328 (554)
Q Consensus 326 i~~ 328 (554)
++.
T Consensus 195 ~~~ 197 (198)
T TIGR01189 195 ELR 197 (198)
T ss_pred Eee
Confidence 664
No 277
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.4e-40 Score=322.60 Aligned_cols=202 Identities=28% Similarity=0.347 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC---CCceeEEEcCCC-------ce
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN-------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~~~~-------~~ 162 (554)
.+.++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 3689999999964 579999999999999999999999999999999999999 999999998753 35
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH-
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK- 241 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (554)
|+|++|++.+++..||.+|+....... ... ....+....++..
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~-------------~~~-----------------------~~~~~~~~~~~~~~ 126 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILR-------------LPR-----------------------KSSDAIRKKRVEDV 126 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhh-------------ccc-----------------------ccchHHHHHHHHHH
Confidence 999999998888889999985321100 000 0000011122334
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCH-H
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDR-A 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~-~ 317 (554)
+++.+++. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.+++ .+.|+|++||++ +
T Consensus 127 ~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~ 205 (226)
T cd03234 127 LLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRS 205 (226)
T ss_pred HHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Confidence 67778875 345788899999999999999999999999999999999999999999888753 478999999998 6
Q ss_pred HHHhhcceEEEeeCCeee
Q 008771 318 FLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~ 335 (554)
.+.++||+|++|++|++.
T Consensus 206 ~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 206 DLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHhCCEEEEEeCCEEE
Confidence 888999999999999874
No 278
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=325.56 Aligned_cols=209 Identities=19% Similarity=0.232 Sum_probs=170.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
+..+.++++++.|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3558999999999988999999999999999999999999999999999999986 79999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.++ ..|+.+|+...... . .. ......
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~---------------~------------------------~~-~~~~~~ 124 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRL---------------N------------------------RY-KGDLGD 124 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhh---------------c------------------------Cc-hHHHHH
Confidence 2489999998875 68999998532100 0 00 001123
Q ss_pred HHHHHhhhcCCCcc---ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~~---~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+... ..++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.+++++ .+.|+|+|
T Consensus 125 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~i 204 (261)
T PRK14263 125 RVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204 (261)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 45566677776421 33567889999999999999999999999999999999999999999988764 36899999
Q ss_pred ecCHHHHHhhcceEEEee--------CCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETE--------MGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~--------~g~~~~~~G~~~~~~ 345 (554)
|||++++.++||+|++|+ +|++. ..|+.+++.
T Consensus 205 sH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~~~~~ 244 (261)
T PRK14263 205 THNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPTAQIF 244 (261)
T ss_pred eCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCHHHHH
Confidence 999999999999999996 78764 456666544
No 279
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.1e-40 Score=317.16 Aligned_cols=193 Identities=27% Similarity=0.383 Sum_probs=151.9
Q ss_pred EEEEeEEEEeCCe-----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccc
Q 008771 98 VKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 98 i~~~~ls~~y~~~-----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
|+++||+++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEecCchh
Confidence 4789999999764 699999999999999999999999999999999999999999999987 79999999987
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTA 250 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~ 250 (554)
+ ..|+.+|+........ +...... +.. . +.+.+..+ |+.
T Consensus 78 ~-~~t~~enl~~~~~~~~------~~~~~~~------------------------~~~---~----l~~~~~~~~~~~~- 118 (204)
T cd03250 78 Q-NGTIRENILFGKPFDE------ERYEKVI------------------------KAC---A----LEPDLEILPDGDL- 118 (204)
T ss_pred c-cCcHHHHhccCCCcCH------HHHHHHH------------------------HHc---C----cHHHHHhccCccc-
Confidence 5 5699999864311000 0000000 000 0 01111111 222
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH-HHc---cCCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLG---KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~---~~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++.+.+||||||||++|||||+.+|++|||||||++||+.+.+++.+ +++ +.+.|||++||+++++.. ||+|
T Consensus 119 ~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEE
Confidence 23456688999999999999999999999999999999999999888876 343 347899999999999987 9999
Q ss_pred EEeeCCe
Q 008771 327 VETEMGV 333 (554)
Q Consensus 327 ~~l~~g~ 333 (554)
++|++|+
T Consensus 198 ~~l~~G~ 204 (204)
T cd03250 198 VVLDNGR 204 (204)
T ss_pred EEEeCCC
Confidence 9999873
No 280
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=8.1e-40 Score=371.87 Aligned_cols=259 Identities=22% Similarity=0.338 Sum_probs=185.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~ 126 (554)
.+......+..++.++.+++|+.+....+.+....... .........|+++||+|+|+ ++++|+|+||+|++|+++
T Consensus 427 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~---~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~v 503 (708)
T TIGR01193 427 PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR---TELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKT 503 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc---cCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEE
Confidence 34444455566777777777776654332211110000 00112234699999999997 467999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ ++.|++||+..+...... .
T Consensus 504 aIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~l~~~~~~~----~ 578 (708)
T TIGR01193 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI-FSGSILENLLLGAKENVS----Q 578 (708)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee-hhHHHHHHHhccCCCCCC----H
Confidence 99999999999999999999999999999998642 59999999988 456999999743100000 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+++.+.+ +.. .+.+.+.++- .|++.. .......||||||||++|||||+.
T Consensus 579 ~~i~~a~------------------------~~a---~l~~~i~~lp--~gldt~-i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 579 DEIWAAC------------------------EIA---EIKDDIENMP--LGYQTE-LSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred HHHHHHH------------------------HHh---CCHHHHHhcc--cccCcE-ecCCCCCCCHHHHHHHHHHHHHhh
Confidence 0000000 000 1111111111 133322 223346899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc-CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++ ...|++++.+.
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i-~~~G~~~~L~~ 697 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKI-IEQGSHDELLD 697 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEE-EEECCHHHHHh
Confidence 9999999999999999999999888865 4789999999999885 5999999999998 46788877654
No 281
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=363.10 Aligned_cols=213 Identities=19% Similarity=0.280 Sum_probs=174.0
Q ss_pred ccEEEEeEEEEeC---CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~----------- 160 (554)
++|+++|+++.|+ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 4699999999994 4579999999999999999999999999999999999998 599999998742
Q ss_pred ceEEEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 MKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ~~i~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++ .+++..||.+|+....... +.. ....+.....+
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-------------~~~---------------------~~~~~~~~~~~ 383 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDR-------------FTG---------------------GSRIDDAAELK 383 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh-------------hcc---------------------CcccChHHHHH
Confidence 2489999996 3567789999985321000 000 00001112235
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisH 314 (554)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.|.|||+|||
T Consensus 384 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sH 463 (506)
T PRK13549 384 TILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISS 463 (506)
T ss_pred HHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECC
Confidence 678889999996446789999999999999999999999999999999999999999999888764 45899999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
|++++.++||++++|++|++. +.|+.++
T Consensus 464 d~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 491 (506)
T PRK13549 464 ELPEVLGLSDRVLVMHEGKLK-GDLINHN 491 (506)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EEecccc
Confidence 999999999999999999974 5555544
No 282
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.2e-39 Score=363.06 Aligned_cols=252 Identities=21% Similarity=0.356 Sum_probs=181.3
Q ss_pred hhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEE
Q 008771 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGL 128 (554)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~l 128 (554)
......+..++.+...++++.+....+.+........ ........|+++|++|+|++ +++|+|+||+|++||+++|
T Consensus 290 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~---~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~I 366 (588)
T PRK13657 290 DQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAI---DLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAI 366 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCC---CcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEE
Confidence 3344444556677777777766544322111000000 01112245999999999975 5799999999999999999
Q ss_pred ECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEEecccccccCccHHHHHHHhhHH--HHHHHHHH
Q 008771 129 VGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKL 196 (554)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~--~~~~~~~~ 196 (554)
+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+||++.++ ..|++||+..+-.+ ..+..
T Consensus 367 vG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~~~d~~i~--- 442 (588)
T PRK13657 367 VGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRSIEDNIRVGRPDATDEEMR--- 442 (588)
T ss_pred ECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccc-cccHHHHHhcCCCCCCHHHHH---
Confidence 99999999999999999999999999999854 2699999999874 67999999743110 00000
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
..+. . .. +.+.+..+ |++.. .......||||||||++|||||
T Consensus 443 ----~al~------------------------~---~~----l~~~i~~lp~gldt~-i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 443 ----AAAE------------------------R---AQ----AHDFIERKPDGYDTV-VGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred ----HHHH------------------------H---hC----HHHHHHhCcccccch-hcCCCCCCCHHHHHHHHHHHHH
Confidence 0000 0 00 11112211 33221 1223457999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+.+|++|||||||++||+.+.+.+.+.+.+ .++|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~-~~g~~~~l~~ 558 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVV-ESGSFDELVA 558 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEE-EeCCHHHHHH
Confidence 999999999999999999999999888764 4799999999999885 59999999999975 4677766654
No 283
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.8e-40 Score=329.82 Aligned_cols=198 Identities=22% Similarity=0.378 Sum_probs=160.0
Q ss_pred EEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.+. .|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 89999999994 4679999999999999999999999999999999999997 799999998532 5999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++ .|+++|+... .. ..+.++.++++.
T Consensus 82 v~q~~~lf~-~tv~~nl~~~-~~---------------------------------------------~~~~~~~~~l~~ 114 (275)
T cd03289 82 IPQKVFIFS-GTFRKNLDPY-GK---------------------------------------------WSDEEIWKVAEE 114 (275)
T ss_pred ECCCcccch-hhHHHHhhhc-cC---------------------------------------------CCHHHHHHHHHH
Confidence 999998865 5999987411 00 001122223333
Q ss_pred cCCCccccCCCC-----------CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 246 LGFTADDGDRLV-----------ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 246 lgl~~~~~~~~~-----------~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
+|+. ...++.+ ..|||||+||++|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+|
T Consensus 115 ~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~i 193 (275)
T cd03289 115 VGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193 (275)
T ss_pred cCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4443 1223333 35999999999999999999999999999999999999999988764 47899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|||++++.. ||||++|++|++. +.|...+.+.
T Consensus 194 sH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 225 (275)
T cd03289 194 EHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN 225 (275)
T ss_pred ECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence 999999975 9999999999985 4566666554
No 284
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=322.58 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=161.3
Q ss_pred EEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
|+++|++++|+ ++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999996 56799999999999999999999999999999999999999999999987432 49999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.++ ..|+.+|+........ ...+.. .... ..+.+.+..+
T Consensus 81 ~q~~~~~-~~tv~~nl~~~~~~~~-----~~~~~~------------------------~~~~-------~~l~~~~~~l 123 (236)
T cd03253 81 PQDTVLF-NDTIGYNIRYGRPDAT-----DEEVIE------------------------AAKA-------AQIHDKIMRF 123 (236)
T ss_pred CCCChhh-cchHHHHHhhcCCCCC-----HHHHHH------------------------HHHH-------cCcHHHHHhc
Confidence 9998776 4699999854311000 000000 0000 0111222222
Q ss_pred --CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 008771 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~ 322 (554)
|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .|.|||++||+++++..
T Consensus 124 ~~~~~-~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~- 201 (236)
T cd03253 124 PDGYD-TIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN- 201 (236)
T ss_pred ccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-
Confidence 332 234667889999999999999999999999999999999999999998887743 28899999999999975
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++|++|++. +.|+..++.
T Consensus 202 ~d~~~~l~~g~i~-~~~~~~~~~ 223 (236)
T cd03253 202 ADKIIVLKDGRIV-ERGTHEELL 223 (236)
T ss_pred CCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999874 556655443
No 285
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.1e-40 Score=319.84 Aligned_cols=200 Identities=26% Similarity=0.371 Sum_probs=156.6
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 789999999964 479999999999999999999999999999999999999999999998743 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++ ..|+.+|+.... . .. .+.+... .+.. .+...+..+ .
T Consensus 83 ~~q~~~l~-~~tv~enl~~~~-~-~~----~~~~~~~------------------------~~~~---~l~~~~~~l--~ 126 (221)
T cd03244 83 IPQDPVLF-SGTIRSNLDPFG-E-YS----DEELWQA------------------------LERV---GLKEFVESL--P 126 (221)
T ss_pred ECCCCccc-cchHHHHhCcCC-C-CC----HHHHHHH------------------------HHHh---CcHHHHHhc--c
Confidence 99998865 469999874210 0 00 0000000 0000 011111111 1
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~ 323 (554)
.|+.. ..++.+..|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||++|||++++.. |
T Consensus 127 ~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 204 (221)
T cd03244 127 GGLDT-VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S 204 (221)
T ss_pred ccccc-ccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence 23332 23567899999999999999999999999999999999999999999998864 36899999999999976 9
Q ss_pred ceEEEeeCCeee
Q 008771 324 TKIVETEMGVSR 335 (554)
Q Consensus 324 d~i~~l~~g~~~ 335 (554)
|+|++|++|++.
T Consensus 205 d~i~~l~~g~~~ 216 (221)
T cd03244 205 DRILVLDKGRVV 216 (221)
T ss_pred CEEEEEECCeEE
Confidence 999999999874
No 286
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-39 Score=360.75 Aligned_cols=257 Identities=24% Similarity=0.382 Sum_probs=192.1
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~ 126 (554)
.+......+..++.+..+.+|+++..+.++........ .......|+++||+|+|+ ++++|+|+||+|++||++
T Consensus 284 ~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-----~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~v 358 (567)
T COG1132 284 PILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP-----LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKV 358 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-----CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEE
Confidence 45555555566788888889888877664321111100 112334599999999998 578999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||||+||||||||+++|+|+++|++|+|.++|.++ .|+||||++.++. .||++|+..+-.+.. .
T Consensus 359 aiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at-----~ 432 (567)
T COG1132 359 AIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDAT-----D 432 (567)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCC-----H
Confidence 99999999999999999999999999999988653 5999999999855 899999976521100 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+++.+.+. . ..+...+.++.+ |++... ......||||||||++||||++.
T Consensus 433 eei~~a~k------------------------~---a~~~d~I~~lp~--g~dt~v-ge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 433 EEIEEALK------------------------L---ANAHEFIANLPD--GYDTIV-GERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HHHHHHHH------------------------H---hChHHHHHhCcc--ccccee-cCCCccCCHHHHHHHHHHHHHhc
Confidence 00000000 0 011111222211 443322 23345899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++||||||||+||..+...+.+.+.+ .++|+|+|+|+++.+.. ||+|++|++|++ ...|++++.+..
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i-~e~G~h~eLl~~ 553 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRI-VERGTHEELLAK 553 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEE-EEecCHHHHHHc
Confidence 9999999999999999999999888742 46799999999999987 999999999995 667888887765
No 287
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-39 Score=314.80 Aligned_cols=185 Identities=24% Similarity=0.371 Sum_probs=155.2
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i 163 (554)
..|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35899999999975 479999999999999999999999999999999999999999999998743 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.++. .|+.+|+..... .. ...+.+.+
T Consensus 85 ~~v~q~~~~~~-~tv~~~l~~~~~------------------------------------------~~----~~~~~~~l 117 (207)
T cd03369 85 TIIPQDPTLFS-GTIRSNLDPFDE------------------------------------------YS----DEEIYGAL 117 (207)
T ss_pred EEEecCCcccC-ccHHHHhcccCC------------------------------------------CC----HHHHHHHh
Confidence 99999997754 599998742100 00 01111222
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ .++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|++|||++++..
T Consensus 118 ~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 118 R--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred h--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 2 2456789999999999999999999999999999999999999999988864 37899999999999976
Q ss_pred hcceEEEeeCCeeee
Q 008771 322 LCTKIVETEMGVSRT 336 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~ 336 (554)
||++++|++|++..
T Consensus 190 -~d~v~~l~~g~i~~ 203 (207)
T cd03369 190 -YDKILVMDAGEVKE 203 (207)
T ss_pred -CCEEEEEECCEEEe
Confidence 99999999998753
No 288
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.8e-40 Score=310.75 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=145.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 369999999999 9999999999999999999999999999999999999999999998742 2599
Q ss_pred EEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 165 FLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|++|++ .+++..|+.||+...
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~-------------------------------------------------------- 102 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALS-------------------------------------------------------- 102 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHH--------------------------------------------------------
Confidence 999995 456678998886310
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
..|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|++|||+++
T Consensus 103 ----------------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 166 (182)
T cd03215 103 ----------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE 166 (182)
T ss_pred ----------------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 00999999999999999999999999999999999999999887753 47899999999999
Q ss_pred HHhhcceEEEeeCCe
Q 008771 319 LDQLCTKIVETEMGV 333 (554)
Q Consensus 319 l~~~~d~i~~l~~g~ 333 (554)
+..+||+|++|++|+
T Consensus 167 ~~~~~d~v~~l~~G~ 181 (182)
T cd03215 167 LLGLCDRILVMYEGR 181 (182)
T ss_pred HHHhCCEEEEecCCc
Confidence 999999999999885
No 289
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-39 Score=321.37 Aligned_cols=207 Identities=23% Similarity=0.330 Sum_probs=167.8
Q ss_pred cEEEEeEEEEeCC--------------------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE
Q 008771 97 GVKLENISKSYKG--------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (554)
Q Consensus 97 ~i~~~~ls~~y~~--------------------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (554)
.|+++||++.|.. +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3677777777622 34999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 157 ~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
+| .+++++|++.+.+..|+.+|+..... .. ........
T Consensus 84 ~g---~~~~~~~~~~~~~~~tv~enl~~~~~---------------~~------------------------~~~~~~~~ 121 (264)
T PRK13546 84 NG---EVSVIAISAGLSGQLTGIENIEFKML---------------CM------------------------GFKRKEIK 121 (264)
T ss_pred CC---EEeEEecccCCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHH
Confidence 87 36788888777677899998743110 00 00011122
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
..+..+++.+++. ...++++.+|||||+|||+||+||+.+|++|||||||++||+.++..+.+.|. +.|.|+|+||
T Consensus 122 ~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiis 200 (264)
T PRK13546 122 AMTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200 (264)
T ss_pred HHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3445566777775 45688899999999999999999999999999999999999999888888764 3589999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||++++..+||+|++|++|++. ..|+++++...
T Consensus 201 H~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 233 (264)
T PRK13546 201 HNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLPK 233 (264)
T ss_pred CCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHHH
Confidence 9999999999999999999975 55777766543
No 290
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.1e-39 Score=308.70 Aligned_cols=162 Identities=33% Similarity=0.471 Sum_probs=144.4
Q ss_pred EEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEE
Q 008771 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v 166 (554)
|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999765 79999999999999999999999999999999999999999999998753 248999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++ .|+.+|+
T Consensus 81 ~q~~~~~~-~tv~~~i---------------------------------------------------------------- 95 (178)
T cd03247 81 NQRPYLFD-TTLRNNL---------------------------------------------------------------- 95 (178)
T ss_pred ccCCeeec-ccHHHhh----------------------------------------------------------------
Confidence 99986653 4665442
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d 324 (554)
+..|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|++|||++++. .||
T Consensus 96 ----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMD 164 (178)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCC
Confidence 358999999999999999999999999999999999999999888753 4789999999999996 699
Q ss_pred eEEEeeCCeee
Q 008771 325 KIVETEMGVSR 335 (554)
Q Consensus 325 ~i~~l~~g~~~ 335 (554)
++++|++|++.
T Consensus 165 ~~~~l~~g~i~ 175 (178)
T cd03247 165 KILFLENGKII 175 (178)
T ss_pred EEEEEECCEEE
Confidence 99999999874
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-40 Score=359.98 Aligned_cols=209 Identities=14% Similarity=0.261 Sum_probs=169.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|+++.|+ .+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 4799999999874 48999999999999999999999999999999999999999999998742 2489
Q ss_pred EEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 165 FLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|+||++ .+++..||.+|+......... .... .. ..........++.+
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~------~~--------------~~~~~~~~~~~~~~ 391 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDG----------GYKG------AM--------------GLFHEVDEQRTAEN 391 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccc----------cccc------cc--------------cccChHHHHHHHHH
Confidence 999984 566788999998532100000 0000 00 00000112245678
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~ 318 (554)
+++.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.|.|||+||||+++
T Consensus 392 ~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~ 471 (510)
T PRK09700 392 QRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471 (510)
T ss_pred HHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 89999996456789999999999999999999999999999999999999999999988874 358999999999999
Q ss_pred HHhhcceEEEeeCCeeee
Q 008771 319 LDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~ 336 (554)
+..+||+|++|++|++..
T Consensus 472 ~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 472 IITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHhhCCEEEEEECCEEEE
Confidence 999999999999998753
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-40 Score=319.06 Aligned_cols=182 Identities=25% Similarity=0.438 Sum_probs=157.6
Q ss_pred ccEEEEeEEEEeCC---------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEE
Q 008771 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v 166 (554)
++++++|+++.|.. ..+++||||+|++||++||||+||||||||.|+|+|+++|++|+|+++|.+..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~---- 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT---- 78 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh----
Confidence 46899999999942 37999999999999999999999999999999999999999999999986521
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
.++ ..+..+++.++|+.+
T Consensus 79 --------~~~------------------------------------------------------~~~~~~~v~elL~~V 96 (268)
T COG4608 79 --------KLS------------------------------------------------------KEERRERVLELLEKV 96 (268)
T ss_pred --------hcc------------------------------------------------------hhHHHHHHHHHHHHh
Confidence 000 012345678889999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~ 322 (554)
|++.+..+|+|++|||||+||++|||||+.+|+++++|||||+||...+..+.++|+ +.|.|++|||||+..+..+
T Consensus 97 gl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 97 GLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred CCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 999989999999999999999999999999999999999999999988888777764 4699999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||||.+|..|+++.. |+.++.
T Consensus 177 sdri~VMy~G~iVE~-g~~~~~ 197 (268)
T COG4608 177 SDRIAVMYLGKIVEI-GPTEEV 197 (268)
T ss_pred cccEEEEecCceeEe-cCHHHH
Confidence 999999999998654 444433
No 293
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-39 Score=342.85 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=169.9
Q ss_pred CccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
.++++++||++.|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|... ++.+.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---~i~~~~~ 95 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---LIAISSG 95 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---eEEeccc
Confidence 356999999999976 4699999999999999999999999999999999999999999999987542 3333445
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+.+..|+.+|+..... . .........+++..+++.+|+. .
T Consensus 96 l~~~lTV~EnL~l~~~---------------~------------------------~~~~~~e~~e~i~elLe~lgL~-~ 135 (549)
T PRK13545 96 LNGQLTGIENIELKGL---------------M------------------------MGLTKEKIKEIIPEIIEFADIG-K 135 (549)
T ss_pred cCCCCcHHHHHHhhhh---------------h------------------------cCCCHHHHHHHHHHHHHHcCCh-h
Confidence 5566799998753110 0 0001112234566778888885 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+ +.|.|||+||||++++..+||+|++
T Consensus 136 ~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIiv 215 (549)
T PRK13545 136 FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALW 215 (549)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence 5688899999999999999999999999999999999999999998888774 3589999999999999999999999
Q ss_pred eeCCeeeeccCChhHHHHH
Q 008771 329 TEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 329 l~~g~~~~~~G~~~~~~~~ 347 (554)
|++|++. +.|+.+++...
T Consensus 216 L~~GkIv-~~G~~~el~~~ 233 (549)
T PRK13545 216 LHYGQVK-EYGDIKEVVDH 233 (549)
T ss_pred EECCEEE-EECCHHHHHhh
Confidence 9999874 45666555444
No 294
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.5e-40 Score=358.55 Aligned_cols=206 Identities=19% Similarity=0.266 Sum_probs=170.4
Q ss_pred ccEEEEeEEEEe---CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y---~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~~~~----------- 160 (554)
.+|+++|++++| +++.+|+|+||+|.+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 469999999999 345799999999999999999999999999999999999985 89999998732
Q ss_pred ceEEEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 MKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ~~i~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++ .+++..||.+|+........ .. .........+.
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~-------------~~---------------------~~~~~~~~~~~ 381 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF-------------CF---------------------KMRIDAAAELQ 381 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhh-------------cc---------------------CCcCCHHHHHH
Confidence 2489999996 46778899999853210000 00 00001112245
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisH 314 (554)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++++ +.|.|||+|||
T Consensus 382 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsH 461 (500)
T TIGR02633 382 IIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSS 461 (500)
T ss_pred HHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECC
Confidence 678889999996445789999999999999999999999999999999999999999998887653 46899999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|++++.++||+|++|++|++.
T Consensus 462 d~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 462 ELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred CHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999874
No 295
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-40 Score=291.24 Aligned_cols=208 Identities=26% Similarity=0.409 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------------- 160 (554)
.|+++|+++.||...+|-||+|+-++||.+.|+||+|+|||||+|.|+=+.-|.+|+..+.+..
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999886532
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..+|+|||...+.+.+||.+|+..+...- ..+..++...++.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv--------------------------------------~gl~~~qa~~~a~ 123 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRV--------------------------------------LGLSKDQALARAE 123 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHH--------------------------------------hCCCHHHHHHHHH
Confidence 25999999999999999999986542110 1223344567788
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~ 317 (554)
++|+.+.|. +..|+.|-.|||||+|||+|||||+++|++|++||||++|||+-...+.++++ ..|.|-+||||..+
T Consensus 124 ellkrlrl~-~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 124 KLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHhccc-cccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 899999986 67899999999999999999999999999999999999999998888777765 46999999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++..++.+|+.|++|+++ -.|+.+-|
T Consensus 203 va~k~as~vvyme~g~iv-e~g~a~~f 228 (242)
T COG4161 203 VARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred HHHhhhhheEeeecCeeE-eecchhhc
Confidence 999999999999999985 44555444
No 296
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.6e-39 Score=320.08 Aligned_cols=194 Identities=21% Similarity=0.310 Sum_probs=159.0
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC----CceeEEEcCCC--------ceEEEEecccc--cccCcc
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIAFLSQEFE--VSMSRT 177 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~~~~--------~~i~~v~Q~~~--~~~~~t 177 (554)
+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|+|++|++. +++..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 89999998843 36999999985 334578
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc--cccCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDR 255 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~ 255 (554)
+.+++...... . .........++.++++.+|+.. ...++
T Consensus 81 ~~~~~~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 121 (230)
T TIGR02770 81 MGNHAIETLRS---------------L------------------------GKLSKQARALILEALEAVGLPDPEEVLKK 121 (230)
T ss_pred HHHHHHHHHHH---------------c------------------------CccHHHHHHHHHHHHHHcCCCchHHHHhC
Confidence 88876422100 0 0000112345778889999863 45688
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .+.|||++|||++++..+||+|++|++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999988887753 478999999999999999999999999
Q ss_pred CeeeeccCChhHHH
Q 008771 332 GVSRTYEGNYSQYV 345 (554)
Q Consensus 332 g~~~~~~G~~~~~~ 345 (554)
|++. ..|..+++.
T Consensus 202 G~i~-~~~~~~~~~ 214 (230)
T TIGR02770 202 GRIV-ERGTVKEIF 214 (230)
T ss_pred CEEE-EeCCHHHHH
Confidence 9974 456655543
No 297
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.3e-39 Score=306.71 Aligned_cols=157 Identities=30% Similarity=0.541 Sum_probs=139.6
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 478999999975 569999999999999999999999999999999999999999999998743 25899
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++ .|+.+| +
T Consensus 81 ~~q~~~~~~-~tv~~~-------------------------------------------------------------l-- 96 (173)
T cd03246 81 LPQDDELFS-GSIAEN-------------------------------------------------------------I-- 96 (173)
T ss_pred ECCCCcccc-CcHHHH-------------------------------------------------------------C--
Confidence 999986654 365432 0
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .|.|+|++|||++++. +
T Consensus 97 --------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~ 161 (173)
T cd03246 97 --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S 161 (173)
T ss_pred --------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h
Confidence 999999999999999999999999999999999999999888743 5789999999999995 7
Q ss_pred cceEEEeeCCe
Q 008771 323 CTKIVETEMGV 333 (554)
Q Consensus 323 ~d~i~~l~~g~ 333 (554)
||+|++|++|+
T Consensus 162 ~d~v~~l~~G~ 172 (173)
T cd03246 162 ADRILVLEDGR 172 (173)
T ss_pred CCEEEEEECCC
Confidence 99999999885
No 298
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.6e-40 Score=311.19 Aligned_cols=173 Identities=32% Similarity=0.525 Sum_probs=142.7
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccH
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv 178 (554)
+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.. ....
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~------------~~~~ 68 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA------------SLSP 68 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC------------cCCH
Confidence 4789999998888999999999999999999999999999999999999999999999864220 0011
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
.. +... ++ .+..+++.+|+. +..++.+.
T Consensus 69 ~~-~~~~---------------------------i~-----------------------~~~q~l~~~gl~-~~~~~~~~ 96 (180)
T cd03214 69 KE-LARK---------------------------IA-----------------------YVPQALELLGLA-HLADRPFN 96 (180)
T ss_pred HH-HHHH---------------------------Hh-----------------------HHHHHHHHcCCH-hHhcCCcc
Confidence 00 0000 00 000156667775 34577889
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ . +.|+|++|||++++.++||++++|++|++
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999888753 2 78999999999999999999999999986
Q ss_pred e
Q 008771 335 R 335 (554)
Q Consensus 335 ~ 335 (554)
.
T Consensus 177 ~ 177 (180)
T cd03214 177 V 177 (180)
T ss_pred E
Confidence 4
No 299
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.8e-39 Score=310.02 Aligned_cols=170 Identities=29% Similarity=0.387 Sum_probs=151.2
Q ss_pred cEEEEeEEEEeCC------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEcCCC-------c
Q 008771 97 GVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~~~~-------~ 161 (554)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 3899999999975 67999999999999999999999999999999999999 9999999998754 3
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.++|++|++.+++..|+.+|+.... .
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~---------------------------------------------------~--- 108 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA---------------------------------------------------K--- 108 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH---------------------------------------------------H---
Confidence 5999999998878889998863110 0
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA- 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~- 317 (554)
..+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|++|||+.
T Consensus 109 ---------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 109 ---------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred ---------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchH
Confidence 017999999999999999999999999999999999999999887753 4889999999996
Q ss_pred HHHhhcceEEEeeCCeee
Q 008771 318 FLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~ 335 (554)
++..+||+|++|++|++.
T Consensus 174 ~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 174 EIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHhcCEEEEEeCCEEE
Confidence 788899999999999874
No 300
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-39 Score=309.33 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=149.9
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEcCCC------ceEE
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN------MKIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~~~~------~~i~ 164 (554)
.|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999974 67999999999999999999999999999999999986 4899999998754 2699
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..|+.+|+.... . +
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~---------------------------------------------------~----~- 106 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA---------------------------------------------------L----L- 106 (192)
T ss_pred EecccCccccCCcHHHHHHHHH---------------------------------------------------H----H-
Confidence 9999998888889999874210 0 0
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-HHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~-~l~ 320 (554)
.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.+++ .+.|+|+||||++ .+.
T Consensus 107 -------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~ 173 (192)
T cd03232 107 -------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIF 173 (192)
T ss_pred -------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHH
Confidence 07999999999999999999999999999999999999999888753 4899999999998 477
Q ss_pred hhcceEEEeeC-Ceee
Q 008771 321 QLCTKIVETEM-GVSR 335 (554)
Q Consensus 321 ~~~d~i~~l~~-g~~~ 335 (554)
.+||+|++|++ |++.
T Consensus 174 ~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 174 EKFDRLLLLKRGGKTV 189 (192)
T ss_pred hhCCEEEEEcCCCeEE
Confidence 89999999998 8864
No 301
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.2e-39 Score=312.29 Aligned_cols=170 Identities=27% Similarity=0.389 Sum_probs=147.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCC-----------ceEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~-----------~~i~ 164 (554)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 4789999999988899999999999999999999999999999999999 58999999998742 1399
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+++..++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~l-------------------------------------------------------------- 98 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL-------------------------------------------------------------- 98 (200)
T ss_pred EeecChhhccCccHHHHH--------------------------------------------------------------
Confidence 999998776666654332
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~ 321 (554)
+....+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|+|++||+++++..
T Consensus 99 ---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 99 ---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred ---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 011247999999999999999999999999999999999999999888753 47899999999999988
Q ss_pred -hcceEEEeeCCeeeeccC
Q 008771 322 -LCTKIVETEMGVSRTYEG 339 (554)
Q Consensus 322 -~~d~i~~l~~g~~~~~~G 339 (554)
+||+|++|++|++. ..|
T Consensus 170 ~~~d~i~~l~~G~i~-~~~ 187 (200)
T cd03217 170 IKPDRVHVLYDGRIV-KSG 187 (200)
T ss_pred hhCCEEEEEECCEEE-EEc
Confidence 79999999999874 334
No 302
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.8e-39 Score=323.23 Aligned_cols=199 Identities=29% Similarity=0.376 Sum_probs=165.0
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEec
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQ 168 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q 168 (554)
+++||++. .+|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.++|.+. .++|+||
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecc
Confidence 57788875 38999999999999999999999999999999999986 499999987532 4899999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+...... ........+++.++++.+|+
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~----------------------------------------~~~~~~~~~~~~~~l~~~~l 116 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPD----------------------------------------KTRTEAVASALNEVAEALGL 116 (248)
T ss_pred cCccCCCccHHHHHHhcCcc----------------------------------------CCCcHHHHHHHHHHHHHcCC
Confidence 98877888999987532100 00011224567788888998
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHcc-------CCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
. ...++++.+||||||||++||+||+. +|++|||||||++||+.++..+.++|++ .+.|||+||||+++
T Consensus 117 ~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~ 195 (248)
T PRK03695 117 D-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH 195 (248)
T ss_pred H-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 6 45688899999999999999999997 6799999999999999999999888753 47899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+..+||+|++|++|++. ..|..+++
T Consensus 196 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 220 (248)
T PRK03695 196 TLRHADRVWLLKQGKLL-ASGRRDEV 220 (248)
T ss_pred HHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999974 55665543
No 303
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=301.15 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+|+++|++++..++.+|+++||++.+||+++|+||||||||||||.|+|...|++|++.++|.+. .-+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 48999999999999999999999999999999999999999999999999999999999998653 46899
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc--cHHHHHHHHhh
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKLMP 244 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 244 (554)
||+..+-|..||.|.+..+.... ..+.. +..+.++.+|.
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~---------------------------------------~~g~~~~e~~~i~~~ala 121 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPH---------------------------------------RSGREPEEDERIAAQALA 121 (259)
T ss_pred ccCcccccceEHHHHHHhccccc---------------------------------------ccCCCchhhHHHHHHHHH
Confidence 99999989999999875432100 00111 22233566677
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHcc------CCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecC
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD 315 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~------~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd 315 (554)
..++. .+..|...+|||||||||.|||+|++ ++++|+||||||+||........+.. ...|..|+.|-||
T Consensus 122 ~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD 200 (259)
T COG4559 122 ATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD 200 (259)
T ss_pred HcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 77765 45678888999999999999999986 44589999999999998877766654 3468999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+++...+||||++|.+|++ +..|...+.+.
T Consensus 201 LNLAA~YaDrivll~~Grv-~a~g~p~~vlt 230 (259)
T COG4559 201 LNLAAQYADRIVLLHQGRV-IASGSPQDVLT 230 (259)
T ss_pred chHHHHhhheeeeeeCCeE-eecCCHHHhcC
Confidence 9999999999999999997 56777666544
No 304
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6e-39 Score=354.32 Aligned_cols=252 Identities=25% Similarity=0.356 Sum_probs=185.1
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+.+|+.+..+.+.+... ... .......|+++|++|+|++ +++|+|+||+|++|++
T Consensus 273 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~ 346 (544)
T TIGR01842 273 PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMP---LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEA 346 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCC---CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCE
Confidence 4444555556678888888888766543322110 000 0112345999999999964 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.++. .|++||+...-.+ ..
T Consensus 347 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~-~~---- 420 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGEN-AD---- 420 (544)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccccc-ccHHHHHhccCCC-CC----
Confidence 999999999999999999999999999999998542 5999999998865 5999998632100 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
.+++... ++ ...+.+.++.+ |++. .......+||||||||++||||
T Consensus 421 ~~~~~~~------------------------~~-------~~~~~~~i~~l~~gl~t-~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 421 PEKIIEA------------------------AK-------LAGVHELILRLPDGYDT-VIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHHHHHH------------------------HH-------HhChHHHHHhCcccccc-ccCCCcCCCCHHHHHHHHHHHH
Confidence 0000000 00 00122233333 4432 2344567899999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+.+|++|||||||++||+.+.+.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++ ...|+++++.
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i-~~~g~~~~l~ 541 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRI-ARFGERDEVL 541 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEE-EeeCCHHHHh
Confidence 9999999999999999999999999888754 4789999999999875 6999999999987 4667776543
No 305
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-39 Score=365.13 Aligned_cols=255 Identities=24% Similarity=0.394 Sum_probs=194.6
Q ss_pred HhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe---eeEEceeEEEECCCE
Q 008771 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGEK 125 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~---~~l~~isl~i~~Ge~ 125 (554)
++......-.+.+|+.++.++|...+.+++..... ..........+.|+++||+|+|+.+ ++|+|+||+|++|+.
T Consensus 941 ~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~--~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqT 1018 (1228)
T KOG0055|consen 941 LGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS--TSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQT 1018 (1228)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC--CCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCE
Confidence 34444445558888888998888877665332211 0110112345679999999999765 599999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHH----HHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EME 191 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~----~~~ 191 (554)
+|||||+||||||.+.+|-.+|.|++|.|.+||.++ +||.|.|+|.+ |+.|++||+..+... +..
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi 1097 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEEVSEEEII 1097 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCCCCHHHHH
Confidence 999999999999999999999999999999998764 59999999998 677999999866211 111
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHH
Q 008771 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (554)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 271 (554)
.+.++..+ ...+..+-+ |++....++ -.+||||||||+|||
T Consensus 1098 ~Aak~ANa------------------------------------H~FI~sLP~--GyDT~vGer-G~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1098 EAAKLANA------------------------------------HNFISSLPQ--GYDTRVGER-GVQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHHHHhhh------------------------------------HHHHhcCcC--cccCccCcc-cCcCCchHHHHHHHH
Confidence 11111111 111111111 333333333 359999999999999
Q ss_pred HHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 272 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||+++||+||||||.||+||.++.+.+.+.|.+ .|.|+|+|.|++..+.+ ||.|+++++|++ .-.|+.++.+..
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~V-vE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKV-VEQGTHDELLAK 1214 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEE-EecccHHHHHhC
Confidence 999999999999999999999999999999964 58999999999999975 999999999998 456888877663
No 306
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7e-39 Score=356.07 Aligned_cols=259 Identities=20% Similarity=0.322 Sum_probs=185.5
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~ 126 (554)
.+......+...+.+...++++.+..+.+.......... ........|+++|++|+|++ +++|+|+||+|++|+++
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~ 364 (585)
T TIGR01192 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAP---ELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTV 364 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCC---CCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEE
Confidence 333444445567777788888776654432111100000 01112345999999999975 57999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.++ ..|++||+..+... .. .
T Consensus 365 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~~-~~----~ 438 (585)
T TIGR01192 365 AIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRSIRENIRLGREG-AT----D 438 (585)
T ss_pred EEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC-cccHHHHHhcCCCC-CC----H
Confidence 99999999999999999999999999999988542 599999999875 57999999643110 00 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+++...+ +. ......+.++.. |++. ........||||||||++|||||+.
T Consensus 439 ~~~~~a~------------------------~~---~~~~~~i~~l~~--g~~t-~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 439 EEVYEAA------------------------KA---AAAHDFILKRSN--GYDT-LVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred HHHHHHH------------------------HH---hCcHHHHHhccc--cccc-hhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 0000000 00 001111111111 3322 2344567899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++|||||||++||+.+.+.+.+.|.+ .+.|+|+|||+++.+. .||+|++|++|++. ..|+++++...
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~ 559 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLI-EKGSFQELIQK 559 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEE-EECCHHHHHHC
Confidence 9999999999999999999999888754 4899999999999996 59999999999974 56887766543
No 307
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.4e-39 Score=320.19 Aligned_cols=214 Identities=19% Similarity=0.279 Sum_probs=167.4
Q ss_pred CCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------
Q 008771 92 SSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (554)
Q Consensus 92 ~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------- 160 (554)
....+.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 14 ~~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 14 VGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ccCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 344567999999999976 579999999999999999999999999999999999999999999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|++|++.+++ .|+.+|+...... . ...+.. .+. ...+
T Consensus 94 ~~~i~~v~q~~~l~~-~tv~~nl~~~~~~--~----~~~~~~--------------~l~-----------------~~~l 135 (257)
T cd03288 94 RSRLSIILQDPILFS-GSIRFNLDPECKC--T----DDRLWE--------------ALE-----------------IAQL 135 (257)
T ss_pred hhhEEEECCCCcccc-cHHHHhcCcCCCC--C----HHHHHH--------------HHH-----------------HhCc
Confidence 25999999997754 5998886321000 0 000000 000 0012
Q ss_pred HHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 008771 240 SKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd 315 (554)
.++++.+ |++. ..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+.+ .+.|+|++||+
T Consensus 136 ~~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~ 214 (257)
T cd03288 136 KNMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR 214 (257)
T ss_pred HHHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 2233333 4542 34567789999999999999999999999999999999999999999888754 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++.+.. ||+|++|++|++. ..|+.+++..
T Consensus 215 ~~~~~~-~dri~~l~~G~i~-~~g~~~~~~~ 243 (257)
T cd03288 215 VSTILD-ADLVLVLSRGILV-ECDTPENLLA 243 (257)
T ss_pred hHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence 999986 9999999999974 5677665543
No 308
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.2e-39 Score=313.91 Aligned_cols=196 Identities=21% Similarity=0.350 Sum_probs=149.7
Q ss_pred EEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceE
Q 008771 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (554)
Q Consensus 99 ~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i 163 (554)
.+.|+.++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999997 4579999999999999999999999999999999999999999999998742 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.++ ..|+.+|+........ ...... .+.++ +...+.. +
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~~~------~~~~~~------------------------~~~~~---l~~~~~~-~ 126 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPFNK------QRYKAV------------------------TDACS---LQPDIDL-L 126 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcCCH------HHHHHH------------------------HHHhC---cHHHHHh-C
Confidence 9999999775 6799999854210000 000000 00000 0000000 0
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH-----HHccCCCeEEEEecCHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-----YLGKQDVPMVIISHDRAF 318 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-----~l~~~g~tvIiisHd~~~ 318 (554)
..|+. ...++++..|||||+|||+|||||+.+|++|||||||++||+.+++.+.+ .+++.+.|+|++||++++
T Consensus 127 -~~~~~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 127 -PFGDQ-TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred -cCccc-cCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 01221 22356788999999999999999999999999999999999999887765 344568999999999999
Q ss_pred HHhhcceEEEeeCC
Q 008771 319 LDQLCTKIVETEMG 332 (554)
Q Consensus 319 l~~~~d~i~~l~~g 332 (554)
+. .||++++|++|
T Consensus 205 ~~-~~d~i~~l~~G 217 (218)
T cd03290 205 LP-HADWIIAMKDG 217 (218)
T ss_pred Hh-hCCEEEEecCC
Confidence 86 69999999887
No 309
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.8e-39 Score=358.32 Aligned_cols=255 Identities=23% Similarity=0.371 Sum_probs=184.7
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+.+++.++...+|+.+....+.+.... ..+ .......|+++||+|+|++ +++|+|+||+|++||+
T Consensus 286 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~----~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~ 360 (571)
T TIGR02203 286 PLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG-TRA----IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGET 360 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCC----CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCE
Confidence 45555555667788888888876654433221110 000 0112245999999999964 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.+ ++.|++||+...-...
T Consensus 361 v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~------ 433 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL-FNDTIANNIAYGRTEQ------ 433 (571)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc-ccccHHHHHhcCCCCC------
Confidence 999999999999999999999999999999998542 59999999987 5679999986431000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
.++ +.+. ..++.. .+.+.+..+ |++... ...-..||||||||++||||
T Consensus 434 -----------~~~-~~i~----------~~l~~~-------~l~~~i~~lp~gldt~i-~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 434 -----------ADR-AEIE----------RALAAA-------YAQDFVDKLPLGLDTPI-GENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred -----------CCH-HHHH----------HHHHHc-------ChHHHHHhCcCccccee-cCCCCcCCHHHHHHHHHHHH
Confidence 000 0000 000000 111222222 333221 12235799999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++.+|++|||||||++||..+.+.+.+.|.+ .++|+|+|||+...+. .||+|++|++|++. ..|++++.+.
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~-~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV-ERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE-eeCCHHHHHH
Confidence 9999999999999999999999999988865 4789999999998885 59999999999874 5677776654
No 310
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-39 Score=309.38 Aligned_cols=183 Identities=20% Similarity=0.270 Sum_probs=155.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------eEEEEeccc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------~i~~v~Q~~ 170 (554)
+|+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 378999999998776776 9999999999999999999999999999999999999999998542 489999998
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++..||.+|+...... .....++.++++.+|+.
T Consensus 80 ~~~~~~tv~~~l~~~~~~--------------------------------------------~~~~~~~~~~l~~~~l~- 114 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEI--------------------------------------------YNSAETLYAAIHYFKLH- 114 (195)
T ss_pred CCCccCCHHHHHHHHHHh--------------------------------------------cccHHHHHHHHHHcCCH-
Confidence 777889999998531100 00123456667778885
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.++++ +.+.|+|+||||++++.. +|.|
T Consensus 115 ~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 115 DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 45688899999999999999999999999999999999999999999988874 468999999999999976 7765
No 311
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-39 Score=301.95 Aligned_cols=157 Identities=32% Similarity=0.566 Sum_probs=138.4
Q ss_pred EEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
|+++|+++.|+++ .+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999875 799999999999999999999999999999999999999999999987432 4889
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++. .|+.|| +
T Consensus 81 ~~~~~~~~~-~t~~e~-------------------------------------------------------------l-- 96 (171)
T cd03228 81 VPQDPFLFS-GTIREN-------------------------------------------------------------I-- 96 (171)
T ss_pred EcCCchhcc-chHHHH-------------------------------------------------------------h--
Confidence 999875432 344321 0
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~ 323 (554)
|||||+|||+|||||+.+|++|||||||++||+.++..+.+++++ .+.|+|++|||++++.. |
T Consensus 97 --------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 161 (171)
T cd03228 97 --------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-A 161 (171)
T ss_pred --------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-C
Confidence 999999999999999999999999999999999999999888753 36899999999999987 9
Q ss_pred ceEEEeeCCe
Q 008771 324 TKIVETEMGV 333 (554)
Q Consensus 324 d~i~~l~~g~ 333 (554)
|++++|++|+
T Consensus 162 d~~~~l~~g~ 171 (171)
T cd03228 162 DRIIVLDDGR 171 (171)
T ss_pred CEEEEEcCCC
Confidence 9999998873
No 312
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=307.29 Aligned_cols=176 Identities=24% Similarity=0.271 Sum_probs=150.8
Q ss_pred cEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC---CCceeEEEcCCC---------
Q 008771 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN--------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~~~~--------- 160 (554)
.+.++||+|.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 478999999995 4579999999999999999999999999999999999999 899999998743
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..++|++|++.+++..||.+|+.... ..
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------------------------------------------------~~- 110 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFAL---------------------------------------------------RC- 110 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhh---------------------------------------------------hh-
Confidence 25999999988888889999874210 00
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE-ecC
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII-SHD 315 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii-sHd 315 (554)
. .++.+..|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|++ +|+
T Consensus 111 ---~--------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 111 ---K--------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred ---c--------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 0 2456789999999999999999999999999999999999999998887753 25666655 566
Q ss_pred HHHHHhhcceEEEeeCCeee
Q 008771 316 RAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~ 335 (554)
.+.+.++||+|++|++|++.
T Consensus 180 ~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 180 SDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHhCCeEEEEECCEEE
Confidence 78998999999999999874
No 313
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.2e-39 Score=318.97 Aligned_cols=178 Identities=26% Similarity=0.396 Sum_probs=148.6
Q ss_pred eeeEEceeEEEE-----CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHH
Q 008771 110 VTVLKDVTWEVK-----KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMS 184 (554)
Q Consensus 110 ~~~l~~isl~i~-----~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~ 184 (554)
...+++++|++. +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|++|++...+..||.+++..
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--~i~~~~q~~~~~~~~tv~e~l~~ 84 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--TVSYKPQYIKADYEGTVRDLLSS 84 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--eEEEecccccCCCCCCHHHHHHH
Confidence 346677777776 79999999999999999999999999999999999875 79999999887778899998742
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH
Q 008771 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
.... .. .....+.++++.+|+. ...++++.+|||||
T Consensus 85 ~~~~-----------------------------------------~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe 120 (246)
T cd03237 85 ITKD-----------------------------------------FY--THPYFKTEIAKPLQIE-QILDREVPELSGGE 120 (246)
T ss_pred Hhhh-----------------------------------------cc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHH
Confidence 1100 00 0012245567778886 45688899999999
Q ss_pred HHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 265 rqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
+|||+||+||+.+|++|||||||++||+.++..+.+.|++ .++|||+||||++++..+||+|++|+++.
T Consensus 121 ~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999999999999998887754 48999999999999999999999997653
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1e-38 Score=297.56 Aligned_cols=158 Identities=28% Similarity=0.465 Sum_probs=133.3
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.. ..+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~------------~~~ 68 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS------------FAS 68 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC------------cCC
Confidence 47899999999889999999999999999999999999999999999999999999999864210 001
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
..+.. -..+++ +
T Consensus 69 ~~~~~------------------------------------------------------------~~~i~~--------~ 80 (163)
T cd03216 69 PRDAR------------------------------------------------------------RAGIAM--------V 80 (163)
T ss_pred HHHHH------------------------------------------------------------hcCeEE--------E
Confidence 10000 000111 1
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|++|||++++.++||++++|++|++
T Consensus 81 ~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 23999999999999999999999999999999999999999888753 488999999999999999999999999986
Q ss_pred e
Q 008771 335 R 335 (554)
Q Consensus 335 ~ 335 (554)
.
T Consensus 161 ~ 161 (163)
T cd03216 161 V 161 (163)
T ss_pred E
Confidence 3
No 315
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.3e-38 Score=351.16 Aligned_cols=255 Identities=18% Similarity=0.245 Sum_probs=183.2
Q ss_pred hhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEE
Q 008771 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVG 127 (554)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~ 127 (554)
......+..++.+..+.+|+.+..+.+.+... .... .......|+++|++|+|++ .++|+|+||+|++|++++
T Consensus 271 ~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~--~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ 345 (569)
T PRK10789 271 LALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEP--VPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLG 345 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCC--CCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEE
Confidence 33444455677777888887665543321110 0000 0112345999999999964 579999999999999999
Q ss_pred EECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHH
Q 008771 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (554)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (554)
|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|++|++.++ ..|++||+..+..+. . .+
T Consensus 346 ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~~~-~----~~ 419 (569)
T PRK10789 346 ICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF-SDTVANNIALGRPDA-T----QQ 419 (569)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec-cccHHHHHhcCCCCC-C----HH
Confidence 9999999999999999999999999999998642 599999999885 469999986431100 0 00
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccC
Q 008771 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (554)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 277 (554)
.+...+ +.. .....+.++- .|++. ..+.....||||||||++|||||+.+
T Consensus 420 ~~~~~~------------------------~~~---~l~~~i~~lp--~gl~t-~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 420 EIEHVA------------------------RLA---SVHDDILRLP--QGYDT-EVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred HHHHHH------------------------HHc---CCHHHHHhCc--Ccccc-eecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 000000 000 0011111111 13322 22344568999999999999999999
Q ss_pred CCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 278 PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 278 p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++. ..|++++....
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~ 539 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIA-QRGNHDQLAQQ 539 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEE-EecCHHHHHHc
Confidence 999999999999999999999888864 5899999999999986 59999999999974 66887766543
No 316
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.9e-38 Score=353.09 Aligned_cols=257 Identities=22% Similarity=0.343 Sum_probs=184.1
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+......+..++.++.+.+|+.+..+.+.+.... ......+......|+++||+|+|++ +++|+|+||+|++||
T Consensus 290 pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge 367 (576)
T TIGR02204 290 SIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP--AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGE 367 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC--CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCC
Confidence 34445555566788888888886654432211100 0000000112245999999999964 569999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+||++.+ ++.|++||+..+..+. .
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l-f~~Ti~~Ni~~~~~~~-~--- 442 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL-FAASVMENIRYGRPDA-T--- 442 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc-ccccHHHHHhcCCCCC-C---
Confidence 999999999999999999999999999999999854 259999999987 5679999996431100 0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGK 272 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAr 272 (554)
.+++... ++..+ +.+.++.+ |++.. .......||||||||++|||
T Consensus 443 -~~~~~~~------------------------l~~~~-------l~~~i~~l~~gl~t~-i~~~g~~LSgGq~Qrl~laR 489 (576)
T TIGR02204 443 -DEEVEAA------------------------ARAAH-------AHEFISALPEGYDTY-LGERGVTLSGGQRQRIAIAR 489 (576)
T ss_pred -HHHHHHH------------------------HHHcC-------cHHHHHhCCCCCCce-eCCCCCcCCHHHHHHHHHHH
Confidence 0000000 00000 11122222 33322 22335689999999999999
Q ss_pred HHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 273 aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|++.+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++. ..|++++...
T Consensus 490 al~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~-~~g~~~~l~~ 563 (576)
T TIGR02204 490 AILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIV-AQGTHAELIA 563 (576)
T ss_pred HHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-eeecHHHHHH
Confidence 99999999999999999999999988887764 4799999999998886 59999999999975 4577766543
No 317
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-38 Score=360.23 Aligned_cols=256 Identities=21% Similarity=0.359 Sum_probs=186.7
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.++.+++|+.+..+.+.+.... ... ........|+++||+|+|++ +++|+|+||+|++|++
T Consensus 410 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~---~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 485 (694)
T TIGR01846 410 PVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLA---ALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEF 485 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCC---CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCE
Confidence 34444445556777777788776654433221110 000 01122346999999999953 4699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ +..|++||+...... ..
T Consensus 486 vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l-f~~ti~eNi~~~~~~-~~---- 559 (694)
T TIGR01846 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL-FSRSIRDNIALCNPG-AP---- 559 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee-hhhhHHHHHhcCCCC-CC----
Confidence 999999999999999999999999999999998653 49999999887 457999999643110 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
.+.+.. .++.. .+.+.+..+ |++.. ......+||||||||++||||
T Consensus 560 ~~~i~~------------------------a~~~~-------~l~~~i~~lp~gl~t~-i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 560 FEHVIH------------------------AAKLA-------GAHDFISELPQGYNTE-VGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHHH------------------------HHHHc-------ChHHHHHhCcCccCcE-ecCCCCCCCHHHHHHHHHHHH
Confidence 000000 00000 112222222 44432 233457899999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
|+.+|++|||||||++||+.+.+.+.+.|++ .+.|+|+|||+++.+.. ||+|++|++|++ ...|++++.+..
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i-~~~g~~~~l~~~ 681 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQI-AESGRHEELLAL 681 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEE-EEeCCHHHHHHc
Confidence 9999999999999999999999999988865 47899999999999965 999999999997 467888876654
No 318
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.7e-39 Score=308.19 Aligned_cols=172 Identities=26% Similarity=0.407 Sum_probs=142.2
Q ss_pred eCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------ceEEEEecccc-cc
Q 008771 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAFLSQEFE-VS 173 (554)
Q Consensus 107 y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------~~i~~v~Q~~~-~~ 173 (554)
|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++. ..
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 456779999999999999999999999999999999999999999999998743 14899999974 33
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+|+...... .........+++.++++.+|+. ...
T Consensus 82 ~~~tv~~nl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~ 121 (190)
T TIGR01166 82 FAADVDQDVAFGPLN---------------------------------------LGLSEAEVERRVREALTAVGAS-GLR 121 (190)
T ss_pred ccccHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCch-hhh
Confidence 457999987532100 0001122345677888889986 457
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 122 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 889999999999999999999999999999999999999999999888753 48899999999875
No 319
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.6e-39 Score=353.01 Aligned_cols=188 Identities=27% Similarity=0.393 Sum_probs=164.6
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
.++|+++|+++.|++. .|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++ ..|+|+||++.+++
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~~i~y~~Q~~~~~~ 413 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKPQYIKPDY 413 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---eeEEEecccccCCC
Confidence 4579999999999875 4999999999999999999999999999999999999999999986 47999999988878
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+++..... ... ....+.++++.+|+. ...+
T Consensus 414 ~~tv~e~l~~~~~-----------------------------------------~~~---~~~~~~~~L~~l~l~-~~~~ 448 (590)
T PRK13409 414 DGTVEDLLRSITD-----------------------------------------DLG---SSYYKSEIIKPLQLE-RLLD 448 (590)
T ss_pred CCcHHHHHHHHhh-----------------------------------------hcC---hHHHHHHHHHHCCCH-HHHh
Confidence 8999998753210 000 012356778889996 5679
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++ .|+|+|+||||++++..+||+|++|+
T Consensus 449 ~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~ 528 (590)
T PRK13409 449 KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE 528 (590)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999997
Q ss_pred C
Q 008771 331 M 331 (554)
Q Consensus 331 ~ 331 (554)
+
T Consensus 529 ~ 529 (590)
T PRK13409 529 G 529 (590)
T ss_pred C
Confidence 5
No 320
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=351.25 Aligned_cols=206 Identities=19% Similarity=0.338 Sum_probs=167.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i 163 (554)
+++|+++|+++.| +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.+. .+
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 3579999999874 4699999999999999999999999999999999999999999999987432 28
Q ss_pred EEEecccc---cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 164 AFLSQEFE---VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 164 ~~v~Q~~~---~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
+|++|++. +++..|+.+|..... ... ... ..........+..+.
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~----------~~~--------------------~~~~~~~~~~~~~~~ 372 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISN---IRN----------YKN--------------------KVGLLDNSRMKSDTQ 372 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhh---hhh----------hcc--------------------cccccCcHHHHHHHH
Confidence 99999853 556778777632100 000 000 000001122345677
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRA 317 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~ 317 (554)
++++.+++.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.+.+ .++|.|||+||||++
T Consensus 373 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 88899998644579999999999999999999999999999999999999999999998876 456999999999999
Q ss_pred HHHhhcceEEEeeCCeee
Q 008771 318 FLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~ 335 (554)
++..+||++++|++|++.
T Consensus 453 ~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 453 ELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHhhCCEEEEEECCEEE
Confidence 999999999999999975
No 321
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-39 Score=351.85 Aligned_cols=212 Identities=20% Similarity=0.321 Sum_probs=171.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
..++++|+++. .+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 256 ~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 256 VRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred cEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 46899999842 58999999999999999999999999999999999999999999998742 2589
Q ss_pred EEecccc---cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 165 FLSQEFE---VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~~---~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|++|++. +++..|+.+|+........ .. . + . ..........+.+
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~-------------~~----~---~-~------------~~~~~~~~~~~~~ 378 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHH-------------LR----A---G-C------------LINNRWEAENADR 378 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhh-------------cc----c---c-c------------ccChHHHHHHHHH
Confidence 9999974 6677899998753210000 00 0 0 0 0000112345778
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~ 318 (554)
+++.+|+..+..++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.+.++| .+.|.|||+||||+++
T Consensus 379 ~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~ 458 (501)
T PRK11288 379 FIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE 458 (501)
T ss_pred HHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 8999999545679999999999999999999999999999999999999999999998876 4568999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+..+||+|++|++|++. +.|..+++.
T Consensus 459 ~~~~~d~i~~l~~g~i~-~~~~~~~~~ 484 (501)
T PRK11288 459 VLGVADRIVVMREGRIA-GELAREQAT 484 (501)
T ss_pred HHhhCCEEEEEECCEEE-EEEccccCC
Confidence 99999999999999874 556555443
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6e-38 Score=316.82 Aligned_cols=208 Identities=25% Similarity=0.348 Sum_probs=158.2
Q ss_pred CCCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccc
Q 008771 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
+..+.|+++|+++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 35 ~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---RISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---EEEEEeCcccc
Confidence 34566999999985 46799999999999999999999999999999999999999999999986 59999999877
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-cc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-AD 251 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~ 251 (554)
+. .||.+|+....... . ......+ ... . +...+..+... ..
T Consensus 110 ~~-~tv~enl~~~~~~~-~-----~~~~~~l------------------------~~~---~----l~~~l~~~~~~~~~ 151 (282)
T cd03291 110 MP-GTIKENIIFGVSYD-E-----YRYKSVV------------------------KAC---Q----LEEDITKFPEKDNT 151 (282)
T ss_pred cc-cCHHHHhhcccccC-H-----HHHHHHH------------------------HHh---C----CHHHHHhccccccc
Confidence 65 59999986421100 0 0000000 000 0 01111111110 01
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH-c--cCCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-G--KQDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~--~~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.+ + ..+.|||+||||++++. .||+|++
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~ 230 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILI 230 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEE
Confidence 234556899999999999999999999999999999999999998887643 2 24789999999999985 7999999
Q ss_pred eeCCeeeeccCChhHHH
Q 008771 329 TEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 329 l~~g~~~~~~G~~~~~~ 345 (554)
|++|++. +.|+..++.
T Consensus 231 l~~G~i~-~~g~~~~~~ 246 (282)
T cd03291 231 LHEGSSY-FYGTFSELQ 246 (282)
T ss_pred EECCEEE-EECCHHHHH
Confidence 9999974 557666554
No 323
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.8e-38 Score=348.06 Aligned_cols=240 Identities=20% Similarity=0.241 Sum_probs=176.2
Q ss_pred HhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEEE
Q 008771 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVG 127 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~ 127 (554)
+......+..++.+..+.+|+.+....+.+... . .. .+......|+++|++|+|++ .++|+|+||+|++|++++
T Consensus 279 l~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~-~-~~---~~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~a 353 (547)
T PRK10522 279 LLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF-P-RP---QAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLF 353 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-c-cc---cccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEE
Confidence 444444445677788888888765322211000 0 00 00011235999999999975 569999999999999999
Q ss_pred EECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHH
Q 008771 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (554)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (554)
|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|++|++.+ ++.|+.+|-. ..
T Consensus 354 ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~ti~~n~~-~~----------- 420 (547)
T PRK10522 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHL-FDQLLGPEGK-PA----------- 420 (547)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhH-HHHhhccccC-ch-----------
Confidence 9999999999999999999999999999998642 59999999876 4456665510 00
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc--cCC--CCCCCChhHHHHHHHHHH
Q 008771 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD--GDR--LVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~--~~~--~~~~LSGGqrqRv~LAra 273 (554)
.++.+.++++.+|+.... .+. ....||||||||++||||
T Consensus 421 -------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 421 -------------------------------------NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred -------------------------------------HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 011122333344443211 011 125899999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+.+|++|||||||++||+++.+.+.+.+. ..++|+|+|||+++.+. .||+|++|++|++..+.|+-.+-
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~~~ 537 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEERDA 537 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCchhh
Confidence 999999999999999999999998877653 24899999999998875 69999999999998887765443
No 324
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.3e-38 Score=381.15 Aligned_cols=257 Identities=20% Similarity=0.308 Sum_probs=185.1
Q ss_pred hhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCC-CCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEE
Q 008771 53 TVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNT-GASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGL 128 (554)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~l 128 (554)
...+..++.++.+.+++++..+.+++........... .+......|+++||+|+|++ .++|+|+||+|++|+++||
T Consensus 1120 ~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAI 1199 (1466)
T PTZ00265 1120 MSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAI 1199 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEE
Confidence 3344557888888888877655432111000000000 01122345999999999963 4799999999999999999
Q ss_pred ECCCCccHHHHHHHHHCCCCC------------------------------------------------------CceeE
Q 008771 129 VGVNGAGKTTQLRIIAGQEEP------------------------------------------------------DSGNV 154 (554)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p------------------------------------------------------~~G~I 154 (554)
||+||||||||+++|+|+++| ++|+|
T Consensus 1200 VG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1279 (1466)
T PTZ00265 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI 1279 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE
Confidence 999999999999999999998 69999
Q ss_pred EEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 008771 155 IKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224 (554)
Q Consensus 155 ~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (554)
.++|.++ .|+||+|++.+ |+.|++||+..+..+. ..+.+...+
T Consensus 1280 ~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g~~~a-----t~eeI~~A~--------------------- 1332 (1466)
T PTZ00265 1280 LLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFGKEDA-----TREDVKRAC--------------------- 1332 (1466)
T ss_pred EECCEEHHhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcCCCCC-----CHHHHHHHH---------------------
Confidence 9998653 59999999988 5789999997542100 000010000
Q ss_pred HHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc
Q 008771 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK 304 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 304 (554)
... .+...+..+-+ |++... ...-..||||||||++|||||+.+|+|||||||||+||.++.+.+.+.|.+
T Consensus 1333 ---k~A---~l~~fI~~LP~--GydT~V-Ge~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1333 ---KFA---AIDEFIESLPN--KYDTNV-GPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred ---HHc---CCHHHHHhCcc--ccCCcc-CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 000 11111222111 332222 223457999999999999999999999999999999999999999887754
Q ss_pred ----CCCeEEEEecCHHHHHhhcceEEEeeC----CeeeeccCChhHHHH
Q 008771 305 ----QDVPMVIISHDRAFLDQLCTKIVETEM----GVSRTYEGNYSQYVL 346 (554)
Q Consensus 305 ----~g~tvIiisHd~~~l~~~~d~i~~l~~----g~~~~~~G~~~~~~~ 346 (554)
.++|+|+|||+++.+.. ||+|++|++ |+++...|++++.+.
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 37999999999999965 999999999 886667899887765
No 325
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=291.11 Aligned_cols=196 Identities=22% Similarity=0.356 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
.++++++.+.-++.++|+++||++.+||+++|+||+|||||||+|+++.+++|++|+++|.|.+. +|+|+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 35667776666788999999999999999999999999999999999999999999999998753 59999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
-|.|.++ ..||.+|+..++.- . +...-...+..+|..+
T Consensus 83 ~Q~paLf-g~tVeDNlifP~~~---------------r--------------------------~rr~dr~aa~~llar~ 120 (223)
T COG4619 83 AQTPALF-GDTVEDNLIFPWQI---------------R--------------------------NRRPDRAAALDLLARF 120 (223)
T ss_pred HcCcccc-ccchhhccccchHH---------------h--------------------------ccCCChHHHHHHHHHc
Confidence 9999984 55999998654310 0 0111234567788999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~ 322 (554)
+++...+++.+.+|||||+||++|+|-|..-|+||||||||++||+.+.+.+.+++ ++...+++.||||.+...+.
T Consensus 121 ~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rh 200 (223)
T COG4619 121 ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRH 200 (223)
T ss_pred CCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhh
Confidence 99988999999999999999999999999999999999999999999988887765 45689999999999998889
Q ss_pred cceEEEeeCCee
Q 008771 323 CTKIVETEMGVS 334 (554)
Q Consensus 323 ~d~i~~l~~g~~ 334 (554)
+|++|-+.+|+.
T Consensus 201 a~k~itl~~G~~ 212 (223)
T COG4619 201 ADKVITLQPGHA 212 (223)
T ss_pred hheEEEeccCcc
Confidence 999999998865
No 326
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-38 Score=347.39 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=166.8
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEEcCCC-----------ce
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN-----------MK 162 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~~~~-----------~~ 162 (554)
.++|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+|+|+|+.+| ++|+|.++|.. ..
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 4579999999999888899999999999999999999999999999999998876 79999998742 24
Q ss_pred EEEEecccccccC--ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 163 IAFLSQEFEVSMS--RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 163 i~~v~Q~~~~~~~--~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
|+|++|++.+++. .++.+++...+.... . .. .. .....++++.
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~--------------~------~~--------------~~-~~~~~~~~~~ 382 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSI--------------G------IY--------------QA-VSDRQQKLAQ 382 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhcccccc--------------c------cc--------------cC-CCHHHHHHHH
Confidence 9999998765432 456554432110000 0 00 00 0011234678
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CC-CeEEEEecCH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDR 316 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g-~tvIiisHd~ 316 (554)
++++.+|+.....++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|++ .+ .|||+||||+
T Consensus 383 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~ 462 (490)
T PRK10938 383 QWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462 (490)
T ss_pred HHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 8899999975367899999999999999999999999999999999999999999999988753 34 5799999999
Q ss_pred HHHHh-hcceEEEeeCCeeeec
Q 008771 317 AFLDQ-LCTKIVETEMGVSRTY 337 (554)
Q Consensus 317 ~~l~~-~~d~i~~l~~g~~~~~ 337 (554)
+++.. +||+|++|++|++..+
T Consensus 463 ~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 463 EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred hhhhhhhheeEEEecCCceEEe
Confidence 99987 5999999999987654
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.3e-38 Score=288.00 Aligned_cols=144 Identities=51% Similarity=0.847 Sum_probs=133.0
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
|+++|+++.|++.++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEEcc---------
Confidence 47899999998888999999999999999999999999999999999999999999999863 23444331
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
T Consensus 71 -------------------------------------------------------------------------------- 70 (144)
T cd03221 71 -------------------------------------------------------------------------------- 70 (144)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
||+||+||++|||||+.+|+++||||||++||+.++..+.+.+++.+.|+|++||+++++..+||++++|++|+
T Consensus 71 --lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 71 --LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 89999999999999999999999999999999999999999998878899999999999999999999999874
No 328
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=347.85 Aligned_cols=208 Identities=19% Similarity=0.330 Sum_probs=169.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
+.|+++|+++ .+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 4689999985 37999999999999999999999999999999999999999999998742 2499
Q ss_pred EEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 165 FLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|+||++ .+++..||.+|+....... ... .. .........+++.+
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~-------------~~~------~~--------------~~~~~~~~~~~~~~ 377 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRY-------------FSR------AG--------------GSLKHADEQQAVSD 377 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhh-------------hcc------cc--------------cccCHHHHHHHHHH
Confidence 999996 4667789999885321000 000 00 00011122456788
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
+++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 378 ~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~ 457 (501)
T PRK10762 378 FIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE 457 (501)
T ss_pred HHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 899999954457899999999999999999999999999999999999999999998888753 58899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChh
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
+..+||+|++|++|++. +.|+..
T Consensus 458 ~~~~~d~v~~l~~G~i~-~~~~~~ 480 (501)
T PRK10762 458 VLGMSDRILVMHEGRIS-GEFTRE 480 (501)
T ss_pred HHhhCCEEEEEECCEEE-EEeccc
Confidence 99999999999999874 444443
No 329
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=298.86 Aligned_cols=211 Identities=29% Similarity=0.390 Sum_probs=177.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+|+++||+|+|+++.+++++|+.|++|.+++|||||||||||||.+++.++++++|+|.++|.+. +++.+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999998653 47778
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
-|+..+...+||+|-+.++-.+. + -|+ .-.+-+..+++.++.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPY---------------S-------qGR---------------lt~eD~~~I~~aieyl 123 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPY---------------S-------QGR---------------LTKEDRRIINEAIEYL 123 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcc---------------c-------CCC---------------CchHHHHHHHHHHHHh
Confidence 88888777889988765431000 0 000 0122345677788888
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~ 322 (554)
+|. +..+|+..+||||||||..||..++++.|.++||||.|+||......+.+.|+ +.|+||++|-||+.|+..+
T Consensus 124 ~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y 202 (252)
T COG4604 124 HLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY 202 (252)
T ss_pred ccc-chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence 886 56789999999999999999999999999999999999999987666665553 5799999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+|+|+-|.+|++ +..|+.++...
T Consensus 203 sD~IVAlK~G~v-v~~G~~~eii~ 225 (252)
T COG4604 203 SDHIVALKNGKV-VKQGSPDEIIQ 225 (252)
T ss_pred hhheeeecCCEE-EecCCHHHhcC
Confidence 999999999997 67888776554
No 330
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5e-38 Score=346.10 Aligned_cols=239 Identities=27% Similarity=0.386 Sum_probs=171.2
Q ss_pred HhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEE
Q 008771 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~ 126 (554)
+......+..++.+....+++.+..+.+.+... .. .... .....|+++||+|+|++ +++|+|+||+|++|+++
T Consensus 277 l~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~~~~-~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~ 351 (529)
T TIGR02857 277 LRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-PVTA-APAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERV 351 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-CCCC-CCCCeEEEEEEEEECCCCCcccccceeEEECCCCEE
Confidence 344444556677888888887776542211110 00 0000 11235999999999975 46999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.++ +.|++||+..+.... . .
T Consensus 352 ~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~~-~----~ 425 (529)
T TIGR02857 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF-AGTIAENIRLARPDA-S----D 425 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc-CcCHHHHHhccCCCC-C----H
Confidence 99999999999999999999999999999998643 599999999875 579999986431100 0 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+.+...+ +.. .+...+.++-+ |++. .......+||||||||++|||||+.
T Consensus 426 ~~i~~a~------------------------~~~---~l~~~i~~lp~--Gldt-~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 426 AEIRRAL------------------------ERA---GLDEFVAALPQ--GLDT-LIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred HHHHHHH------------------------HHc---CcHHHHHhCcc--cccc-hhccccccCCHHHHHHHHHHHHHhc
Confidence 0000000 000 01111111111 2221 1223346899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
+|++|||||||++||+.+.+.+.+.+.+ .++|+|+|||+++.+. .||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999999999888865 5799999999999985 59999875
No 331
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.5e-38 Score=348.12 Aligned_cols=206 Identities=18% Similarity=0.308 Sum_probs=168.0
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i 163 (554)
+++|+++|+++ .+|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 34799999984 26999999999999999999999999999999999999999999998742 259
Q ss_pred EEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 164 AFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 164 ~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
+|+||++ .+++..|+.+|+........ .. ........+.+.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-------------~~-----------------------~~~~~~~~~~~~ 384 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRR-------------GF-----------------------WIKPARENAVLE 384 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhh-------------cc-----------------------ccChHHHHHHHH
Confidence 9999985 36677899888742100000 00 000011234577
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~ 317 (554)
++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|++ .|.|||+||||++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 385 RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 8899999963457899999999999999999999999999999999999999999999888653 5899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChh
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
++.++||+|++|++|++. +.|..+
T Consensus 465 ~i~~~~d~i~~l~~G~i~-~~~~~~ 488 (510)
T PRK15439 465 EIEQMADRVLVMHQGEIS-GALTGA 488 (510)
T ss_pred HHHHhCCEEEEEECCEEE-EEEccc
Confidence 999999999999999874 444433
No 332
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-39 Score=305.89 Aligned_cols=207 Identities=31% Similarity=0.435 Sum_probs=170.5
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ce
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MK 162 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~ 162 (554)
.++.|+++||++.|+++++|+||||+|++||.|+|+|+||||||||+++++|.++|++|.+.+.|.. .+
T Consensus 28 ~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 28 NEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred CcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 3467999999999999999999999999999999999999999999999999999999999876642 25
Q ss_pred EEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 163 IAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 163 i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
||||+-.. .+..+.+|+|.+.+++..-... + +....+....++.
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~-----------------------y-----------~~~~~~~~~~~a~ 153 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGI-----------------------Y-----------QEDLTAEDLAAAQ 153 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccc-----------------------c-----------ccCCCHHHHHHHH
Confidence 89997543 2334567777766554211000 0 0000112345688
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc-----CCCeEEEEecC
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHD 315 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~g~tvIiisHd 315 (554)
.+++.+|+.. ..+++..+||-||||||.|||||+.+|++|||||||+|||...++.|.+.|.+ .+.++|+|||.
T Consensus 154 ~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 154 WLLELLGAKH-LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232 (257)
T ss_pred HHHHHcchhh-hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 8999999874 78999999999999999999999999999999999999999999888887753 36799999999
Q ss_pred HHHHHhhcceEEEeeCCeee
Q 008771 316 RAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~ 335 (554)
.+++..+.++++.+.+|+++
T Consensus 233 ~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 233 AEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred hhhcccccceEEEeeCCcee
Confidence 99999999999999999873
No 333
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.4e-38 Score=375.85 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=178.9
Q ss_pred CccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eE
Q 008771 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i 163 (554)
..+|+++||+|.|++ +.+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 356999999999985 5799999999999999999999999999999999999999999999988542 49
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
||+||++.+++.+|++|++..... + ..+...+.++.+.+++
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~---------------l------------------------~g~~~~~~~~~v~~lL 2055 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYAR---------------L------------------------RGVPAEEIEKVANWSI 2055 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHH
Confidence 999999998889999998753110 0 0011123445677889
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+||. +..++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.+.+.++ +.|+|||++||+++++.
T Consensus 2056 e~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e 2134 (2272)
T TIGR01257 2056 QSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134 (2272)
T ss_pred HHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999996 46789999999999999999999999999999999999999999999988764 35899999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
.+||||++|++|++. +.|+..+
T Consensus 2135 ~lcDrV~IL~~G~i~-~~Gs~q~ 2156 (2272)
T TIGR01257 2135 ALCTRLAIMVKGAFQ-CLGTIQH 2156 (2272)
T ss_pred HhCCEEEEEECCEEE-EECCHHH
Confidence 999999999999874 5676544
No 334
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.8e-38 Score=346.24 Aligned_cols=229 Identities=25% Similarity=0.348 Sum_probs=159.7
Q ss_pred hhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEE
Q 008771 51 AATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLV 129 (554)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lv 129 (554)
.....+..++.+..+.+|+.+..+.+.+.... ..+...........|+++||+|+|++ +++|+|+||+|++|++++|+
T Consensus 289 ~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIv 367 (529)
T TIGR02868 289 PLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAIL 367 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEE
Confidence 33334455777778888877665443221110 00000000112245999999999975 56999999999999999999
Q ss_pred CCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008771 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (554)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (554)
|+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ ++.|++||+..+..+. . .+++.
T Consensus 368 G~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l-F~~TI~eNI~~g~~~~-~----~e~i~ 441 (529)
T TIGR02868 368 GPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL-FDTTVRDNLRLGRPDA-T----DEELW 441 (529)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc-ccccHHHHHhccCCCC-C----HHHHH
Confidence 99999999999999999999999999998653 59999999988 5669999997532100 0 00000
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCe
Q 008771 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (554)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~l 280 (554)
+.++ ..+ +.+.+.++-+ |++... ...-..||||||||++|||||+.+|++
T Consensus 442 ~al~------------------------~a~---l~~~i~~lp~--GldT~i-ge~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 442 AALE------------------------RVG---LADWLRSLPD--GLDTVL-GEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred HHHH------------------------HcC---CHHHHHhCcc--cccchh-ccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 1110 000 1111111111 222211 122357999999999999999999999
Q ss_pred EeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCH
Q 008771 281 LLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (554)
Q Consensus 281 LlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~ 316 (554)
||||||||+||+++.+.+.+.+.+ .++|+|+|||++
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999988865 479999999984
No 335
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-37 Score=375.94 Aligned_cols=258 Identities=21% Similarity=0.275 Sum_probs=185.5
Q ss_pred hhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEE
Q 008771 51 AATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGL 128 (554)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~l 128 (554)
.....+..++.+..+++|+.+..+.+.+..............+..+.|+++||+|+|++ .++|+|+||+|++||++||
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaI 1267 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGV 1267 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEE
Confidence 33344456777888888887765443321110000000000112346999999999953 4799999999999999999
Q ss_pred ECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHH
Q 008771 129 VGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (554)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (554)
||+||||||||+++|.|+++|++|+|.++|.++ +|+||||+|.++ +.|+++|+...- + .. .++
T Consensus 1268 VG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF-~gTIr~NL~~~~-~-~s----dee 1340 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF-SGTVRFNIDPFS-E-HN----DAD 1340 (1495)
T ss_pred ECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeee-CccHHHHcCCCC-C-CC----HHH
Confidence 999999999999999999999999999998653 599999999885 569999985320 0 00 000
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC
Q 008771 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p 278 (554)
+.+.+ +.. .+...+.++- .|++.. ......+||||||||++|||||+++|
T Consensus 1341 i~~al------------------------~~a---~l~~~I~~lp--~GLdt~-v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1341 LWEAL------------------------ERA---HIKDVIDRNP--FGLDAE-VSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred HHHHH------------------------HHc---CCHHHHHhCc--CCCCce-ecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 00000 000 1111121111 144322 23334689999999999999999999
Q ss_pred CeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 279 DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 279 ~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|||||||||+||.++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|++.. .|++++.+..
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE-~Gt~~eLl~~ 1459 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-YDSPQELLSR 1459 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999988865 47999999999999986 99999999999865 4777776653
No 336
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.3e-37 Score=349.31 Aligned_cols=244 Identities=16% Similarity=0.274 Sum_probs=181.1
Q ss_pred hhHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhh----ccccC-------------C--CCC-CCCCccEEEEeEEEE
Q 008771 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKY----SNKQS-------------N--TGA-SSISSGVKLENISKS 106 (554)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------~--~~~-~~~~~~i~~~~ls~~ 106 (554)
..+.........++++...++|+++..+.+.+.... ..... . ... ......|+++||++.
T Consensus 381 ~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~ 460 (659)
T TIGR00954 381 DALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLV 460 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEE
Confidence 344555556677888999999988876543321100 00000 0 000 012346999999999
Q ss_pred eC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHh
Q 008771 107 YK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (554)
Q Consensus 107 y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~ 185 (554)
|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ ...|+||||++.+++. |++||+..+
T Consensus 461 ~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-~~~i~~v~Q~~~l~~~-tv~eni~~~ 538 (659)
T TIGR00954 461 TPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-KGKLFYVPQRPYMTLG-TLRDQIIYP 538 (659)
T ss_pred CCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-CCcEEEECCCCCCCCc-CHHHHHhcC
Confidence 95 55799999999999999999999999999999999999999999999875 3479999999987655 999998643
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCC---------C
Q 008771 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR---------L 256 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~---------~ 256 (554)
.... . .. .....++++.++++.+|+.. ..++ .
T Consensus 539 ~~~~-~-----------~~--------------------------~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~~~~ 579 (659)
T TIGR00954 539 DSSE-D-----------MK--------------------------RRGLSDKDLEQILDNVQLTH-ILEREGGWSAVQDW 579 (659)
T ss_pred CChh-h-----------hh--------------------------ccCCCHHHHHHHHHHcCCHH-HHhhcCCccccccc
Confidence 2100 0 00 00001223344455555532 1122 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCC
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g 332 (554)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++.|.|+|+||||++++ ..||+|++|+.+
T Consensus 580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeCC
Confidence 478999999999999999999999999999999999999999999988899999999999998 579999999743
No 337
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-37 Score=375.08 Aligned_cols=252 Identities=22% Similarity=0.294 Sum_probs=181.9
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGA 134 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGs 134 (554)
..++.+..+++|+.+..+.+.+..............+..+.|+++||+|+|.+ .++|+|+||+|++||++||||++||
T Consensus 1197 ~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGS 1276 (1622)
T PLN03130 1197 SLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGA 1276 (1622)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCC
Confidence 34567778888887654433221110000000000112356999999999964 3699999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008771 135 GKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (554)
Q Consensus 135 GKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (554)
|||||+++|.|+++|++|+|.++|.++ +|+||||+|.++ ..|+++|+...- + . ..+++...+
T Consensus 1277 GKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF-~GTIreNLd~~~-~-~----tdeei~~Al- 1348 (1622)
T PLN03130 1277 GKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLF-SGTVRFNLDPFN-E-H----NDADLWESL- 1348 (1622)
T ss_pred CHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccc-cccHHHHhCcCC-C-C----CHHHHHHHH-
Confidence 999999999999999999999999653 599999999885 569999985321 0 0 000000000
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeec
Q 008771 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (554)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLD 284 (554)
+.. .+...+..+- .|++... .....+||||||||++|||||+++|+|||||
T Consensus 1349 -----------------------~~a---~l~~~I~~lp--~GLdt~V-ge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1349 -----------------------ERA---HLKDVIRRNS--LGLDAEV-SEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred -----------------------HHc---CcHHHHHhCc--cccCccc-cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 000 1111122111 2443222 2334689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 285 EPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 285 EPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||||+||.++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|++.. .|++.+.+..
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE-~Gt~~eLl~~ 1462 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE-FDTPENLLSN 1462 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE-eCCHHHHHhC
Confidence 99999999999999988865 47999999999999976 99999999999865 4777776653
No 338
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.9e-37 Score=342.66 Aligned_cols=238 Identities=19% Similarity=0.267 Sum_probs=172.1
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCc---chhhhhhhccccCC--CCCCCCCccEEEEeEEEEeCCe-----eeEEcee
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSA---DEFENKKYSNKQSN--TGASSISSGVKLENISKSYKGV-----TVLKDVT 117 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~i~~~~ls~~y~~~-----~~l~~is 117 (554)
.+......+..++.+..+.+|+.+... ++.......+.... ..+......|+++||+|+|++. ++|+|+|
T Consensus 283 pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs 362 (555)
T TIGR01194 283 PLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPID 362 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccce
Confidence 455555556678888888888877632 21110000000000 0001123459999999999752 5999999
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhH
Q 008771 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFK 187 (554)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~ 187 (554)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .++||+|++.++ +.|+++|....
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf-~~ti~~n~~~~-- 439 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF-DDLIGPDEGEH-- 439 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhh-hhhhhcccccc--
Confidence 99999999999999999999999999999999999999998542 489999998774 45777663100
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc-----cCCCCCCCCh
Q 008771 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-----GDRLVASFSS 262 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-----~~~~~~~LSG 262 (554)
..++++.++++.+++.... .......|||
T Consensus 440 ----------------------------------------------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 440 ----------------------------------------------ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred ----------------------------------------------hhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 0011222333333432110 0112368999
Q ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 263 GqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.+ +..++|+|+|||+++.+. .||+|++|++|++.
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIV 549 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999886643 245899999999999875 79999999999875
No 339
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.9e-37 Score=303.91 Aligned_cols=191 Identities=30% Similarity=0.404 Sum_probs=154.0
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEecccccc--cCccHHHHHHHhhHHHH
Q 008771 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS--MSRTVREEFMSAFKEEM 190 (554)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~~--~~~tv~e~~~~~~~~~~ 190 (554)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.++ +..|+.+|+........
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999864 3599999998764 34789988753210000
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 270 (554)
. .. .......+.++.++++.+|+. ...++.+.+|||||||||+|
T Consensus 81 --------------~------~~---------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 124 (223)
T TIGR03771 81 --------------G------WL---------------RRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLV 124 (223)
T ss_pred --------------c------cc---------------cCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHH
Confidence 0 00 000011234577788899986 45688899999999999999
Q ss_pred HHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 271 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||||+.+|++|||||||++||+.++..+.++|++ .|.|+|++|||++++.++||+|+++ +|++. +.|+.+++..
T Consensus 125 aral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~~ 201 (223)
T TIGR03771 125 ARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQD 201 (223)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhcC
Confidence 9999999999999999999999999999888753 4889999999999999999999999 78874 6677665533
No 340
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.3e-38 Score=285.87 Aligned_cols=216 Identities=29% Similarity=0.448 Sum_probs=182.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC-CC-----------ceE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK-SN-----------MKI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~-~~-----------~~i 163 (554)
+.++++||+++|++..+|+++||+|.+||.-+||||||+||||++.+|+|..+|+.|+|+++| .+ ..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 568999999999999999999999999999999999999999999999999999999999998 32 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|.-||.|..|...||+||+..+......+ +..+.. . -..+-+.+++++|
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v--------------------~a~L~~----------r-~~~~e~~ride~L 132 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSV--------------------FASLFA----------R-LRAEERRRIDELL 132 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcch--------------------HHHhhh----------h-cChhHHHHHHHHH
Confidence 99999999999999999986543211000 000000 0 1122346899999
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
...||. +..++....||-||||++.|+..++++|++|+||||++|+-........++|++ .+.+|++|.||+.|+..
T Consensus 133 a~igL~-~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 133 ATIGLG-DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVRE 211 (249)
T ss_pred HHcccc-hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHH
Confidence 999996 566888999999999999999999999999999999999999888777777764 46799999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+|++|.+|+.|.+ ...|+.++.
T Consensus 212 ~A~~VTVlh~G~V-L~EGsld~v 233 (249)
T COG4674 212 IADKVTVLHEGSV-LAEGSLDEV 233 (249)
T ss_pred hhheeEEEeccce-eecccHHHh
Confidence 9999999999976 678887754
No 341
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.7e-37 Score=370.53 Aligned_cols=260 Identities=23% Similarity=0.279 Sum_probs=186.5
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..+..+..+++|+.+..+.+.+.............-+..+.|+++||+++|++ .++|+||||+|++||+
T Consensus 1235 ~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~Gek 1314 (1522)
T TIGR00957 1235 YLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEK 1314 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCE
Confidence 33444445566788888888887765443321100000000000123356999999999964 4699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||||++|||||||+++|.|+++|++|+|.++|.++ +|+||||+|.++ +.|+++|+.. +.+ ..
T Consensus 1315 iaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF-~gTIr~NLdp-~~~-~s---- 1387 (1522)
T TIGR00957 1315 VGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF-SGSLRMNLDP-FSQ-YS---- 1387 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc-CccHHHHcCc-ccC-CC----
Confidence 999999999999999999999999999999999653 599999999885 4699999841 100 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
-+.+...+ +.. .+...+.++- -|++... ...-..||||||||++|||||+
T Consensus 1388 deei~~al------------------------~~a---~l~~~I~~lp--~GLdt~v-~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1388 DEEVWWAL------------------------ELA---HLKTFVSALP--DKLDHEC-AEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred HHHHHHHH------------------------HHc---CcHHHHhhCc--cCCCcee-cCCCCcCCHHHHHHHHHHHHHH
Confidence 00000000 000 1111122111 1443222 2234579999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++|+||||||||++||.++...+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|++..+ |++.+.+.
T Consensus 1438 r~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~-G~~~eLl~ 1508 (1522)
T TIGR00957 1438 RKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF-GAPSNLLQ 1508 (1522)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 99999999999999999999999998865 48999999999999976 999999999998654 67766554
No 342
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-38 Score=301.48 Aligned_cols=194 Identities=27% Similarity=0.432 Sum_probs=162.1
Q ss_pred eEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEEEe
Q 008771 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (554)
Q Consensus 102 ~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~v~ 167 (554)
|+.+.+|+. .| +++|+++.-.++||.|+||||||||+|+|+|+..|+.|.|.++|.. .+|||||
T Consensus 5 ~~~~~lG~~-~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 5 NFRQRLGNF-AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred ehhhhcCce-EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 334444432 33 5799998867999999999999999999999999999999998742 3699999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
||..+|+.+||+.|+..+... .....++.+.+.+|
T Consensus 83 QDARLFpH~tVrgNL~YG~~~---------------------------------------------~~~~~fd~iv~lLG 117 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWK---------------------------------------------SMRAQFDQLVALLG 117 (352)
T ss_pred eccccccceEEecchhhhhcc---------------------------------------------cchHhHHHHHHHhC
Confidence 999999999999998643210 01234566778889
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~ 323 (554)
+. +.++|+|.+|||||||||+|+|||+..|++||||||.++||..-+..+..+|. +.+..|++|||.++++.++|
T Consensus 118 I~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLA 196 (352)
T COG4148 118 IE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196 (352)
T ss_pred cH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhh
Confidence 96 57799999999999999999999999999999999999999998888887764 46899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++. ..|...+.
T Consensus 197 d~vV~le~GkV~-A~g~~e~v 216 (352)
T COG4148 197 DRVVVLENGKVK-ASGPLEEV 216 (352)
T ss_pred heEEEecCCeEE-ecCcHHHH
Confidence 999999999984 44554443
No 343
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.9e-37 Score=346.43 Aligned_cols=211 Identities=25% Similarity=0.370 Sum_probs=173.4
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC--ceeEEEcCCC------ceEEEEeccc
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SGNVIKAKSN------MKIAFLSQEF 170 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~--~G~I~~~~~~------~~i~~v~Q~~ 170 (554)
.++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|..+|+ +|+|.++|.+ ..++||+|++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccc
Confidence 4678899999889999999999999999999999999999999999999885 8999999853 2599999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++..||+|++..... +. .. .....++..++++++++.+||.+
T Consensus 150 ~l~~~lTV~E~l~~~a~---------------~~--~~-------------------~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 150 ILYPHLTVRETLVFCSL---------------LR--LP-------------------KSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred ccCCcCCHHHHHHHHHH---------------hC--CC-------------------CCCCHHHHHHHHHHHHHHcCChh
Confidence 88888999999853210 00 00 00011223456788899999964
Q ss_pred cc----cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-HHHhh
Q 008771 251 DD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLDQL 322 (554)
Q Consensus 251 ~~----~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~-~l~~~ 322 (554)
.. .++.+..|||||||||+||++|+.+|+||||||||+|||..+...+.+.|++ .|+|||++||+++ .+.++
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Confidence 21 2456788999999999999999999999999999999999999999888753 5899999999998 58889
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|++|++|++ .|.|+.++...
T Consensus 274 ~D~iilL~~G~i-v~~G~~~~~~~ 296 (659)
T PLN03211 274 FDSVLVLSEGRC-LFFGKGSDAMA 296 (659)
T ss_pred hceEEEecCCcE-EEECCHHHHHH
Confidence 999999999986 57787665443
No 344
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.7e-37 Score=315.40 Aligned_cols=250 Identities=24% Similarity=0.378 Sum_probs=183.0
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
-+..+...|++...++.+-.|+-+.....+.... ...-..+...+.++++++.=++ +++++++||++.+||.
T Consensus 291 Pid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~------~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~ 364 (580)
T COG4618 291 PIDLAIANWKQFVAARQSYKRLNELLAELPAAAE------RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEA 364 (580)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC------CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCce
Confidence 4556677788888888887777555433322111 1111234567999999976543 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+|||||||||||||.|+|.|..+|.+|.|++||.+ ..|||+||+..+ |..||.|||.-.-.+ .
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL-F~GTIaeNIaRf~~~-~----- 437 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL-FDGTIAENIARFGEE-A----- 437 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccccee-cCCcHHHHHHhcccc-C-----
Confidence 99999999999999999999999999999999854 369999999998 556999999642100 0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
++...+ ..+. .. .+++++-.+ |.+... ...-..||||||||++||||
T Consensus 438 ------------d~~kIi-----------eAA~---lA----gvHelIl~lP~GYdT~i-G~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 438 ------------DPEKVI-----------EAAR---LA----GVHELILRLPQGYDTRI-GEGGATLSGGQRQRIALARA 486 (580)
T ss_pred ------------CHHHHH-----------HHHH---Hc----ChHHHHHhCcCCccCcc-CCCCCCCCchHHHHHHHHHH
Confidence 000000 0000 00 112222111 222221 12235899999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
|..+|.+++||||-++||.+....|.+.+ ++.|+|+|+|||+++.+. .+|+|++|++|.+..| |.-++
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~F-G~r~e 557 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAF-GPREE 557 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhc-CCHHH
Confidence 99999999999999999999999998875 568999999999999996 6999999999987544 44433
No 345
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.2e-36 Score=296.04 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=145.1
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE-EcCCCceEEEEecccccccCccHHHHHHHhhHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (554)
++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|. +++.... +.+.+.+++.+|+.+|+......
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---~~~~~~l~~~ltv~enl~~~~~~- 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---LGANSFILPGLTGEENARMMASL- 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---cccccccCCcCcHHHHHHHHHHH-
Confidence 379999999999999999999999999999999999999999997 6654332 33556677788999998532100
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHH
Q 008771 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (554)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (554)
. .....+. ...+...++++ ...++++.+||||||||++
T Consensus 77 --------------~------------------------~~~~~~~---~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~ 114 (213)
T PRK15177 77 --------------Y------------------------GLDGDEF---SHFCYQLTQLE-QCYTDRVSEYSVTMKTHLA 114 (213)
T ss_pred --------------c------------------------CCCHHHH---HHHHHHHhChh-HHhhchHhhcCHHHHHHHH
Confidence 0 0000000 11112234554 3457888999999999999
Q ss_pred HHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 270 LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
||+||+.+|++|||||||++||+.+...+.+.+.+ .+.|+|++|||+.++..+||+|++|++|++. +.|+..+
T Consensus 115 la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 189 (213)
T PRK15177 115 FAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQ 189 (213)
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHH
Confidence 99999999999999999999999998888876532 3578999999999999999999999999974 5565544
No 346
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.2e-36 Score=364.72 Aligned_cols=212 Identities=23% Similarity=0.333 Sum_probs=163.7
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
+.|+++||+|+|++ .++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.++|.++ .|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 46999999999964 3599999999999999999999999999999999999999999999998653 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+||||++.+| +.||++|+.. +.+ .. -+.+...+ +..+ +...+..+-
T Consensus 1387 ~iVpQdp~LF-~gTIreNIdp-~~~-~s----deeI~~Al------------------------~~a~---l~~~I~~lp 1432 (1560)
T PTZ00243 1387 SMIPQDPVLF-DGTVRQNVDP-FLE-AS----SAEVWAAL------------------------ELVG---LRERVASES 1432 (1560)
T ss_pred eEECCCCccc-cccHHHHhCc-ccC-CC----HHHHHHHH------------------------HHCC---ChHHHhhCc
Confidence 9999999885 5699999842 100 00 00011111 1111 111121111
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccC-CCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~ 320 (554)
-|++... ...-.+||||||||++|||||+++ |+|||||||||+||+++.+.+.+.|++ .++|+|+|+|+++.+.
T Consensus 1433 --~Gldt~v-ge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1433 --EGIDSRV-LEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred --ccccccc-cCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 1332211 222357999999999999999995 899999999999999999999988864 4799999999999997
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
. ||+|++|++|++.. .|++++.+.
T Consensus 1510 ~-~DrIlVLd~G~VvE-~Gt~~eLl~ 1533 (1560)
T PTZ00243 1510 Q-YDKIIVMDHGAVAE-MGSPRELVM 1533 (1560)
T ss_pred h-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 5 99999999999854 577777654
No 347
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-37 Score=311.49 Aligned_cols=246 Identities=23% Similarity=0.366 Sum_probs=189.0
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCcc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAG 135 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsG 135 (554)
+.+|+.--+++++|+...++++....+..++ -....+-|+++||+|.|. ++++|+||||++.+|+.+|||||+|+|
T Consensus 500 R~iQ~nfiDmEnmfdllkee~eVvd~P~a~p---l~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaG 576 (790)
T KOG0056|consen 500 RSIQKNFIDMENMFDLLKEEPEVVDLPGAPP---LKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAG 576 (790)
T ss_pred HHHHHhhhhHHHHHHHhhcCchhhcCCCCCC---ccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCc
Confidence 5688888999999999988876655333222 223356799999999995 689999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhh----HHHHHHHHHHHHHHH
Q 008771 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQK 201 (554)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~~~~~~~~~~ 201 (554)
|||++|+|..++...+|.|.++|.++ .||.||||..+ ++.|+..|+..+- .++...+++...+..
T Consensus 577 KSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL-FNdTI~yNIryak~~AsneevyaAAkAA~IHd 655 (790)
T KOG0056|consen 577 KSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL-FNDTILYNIRYAKPSASNEEVYAAAKAAQIHD 655 (790)
T ss_pred hhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee-ecceeeeheeecCCCCChHHHHHHHHHhhHHH
Confidence 99999999999999999999999875 59999999887 5668988885431 111111111111111
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeE
Q 008771 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (554)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lL 281 (554)
.+.. .++.++....+-| -.|||||||||||||+++..|.++
T Consensus 656 rIl~-----------------------------fPegY~t~VGERG----------LkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 656 RILQ-----------------------------FPEGYNTRVGERG----------LKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred HHhc-----------------------------Cchhhhhhhhhcc----------cccCCcchhhHHHHHHHhcCCcEE
Confidence 1000 0111111122222 269999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 282 lLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|||.||+||..+.+.+...|.+ .+.|-|+|.|+++.+-+ ||.|+++++|.+ .-.|+..+.+.+
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~I-vErG~HeeLl~r 762 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRI-VERGRHEELLKR 762 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeE-eecCcHHHHHhc
Confidence 99999999999999999888765 58899999999999975 999999999987 456777766654
No 348
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.2e-37 Score=304.15 Aligned_cols=184 Identities=25% Similarity=0.350 Sum_probs=150.3
Q ss_pred EeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE-----------EcCCC--------
Q 008771 101 ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN-------- 160 (554)
Q Consensus 101 ~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-----------~~~~~-------- 160 (554)
.|++|+|++. .+|+|+|+ |.+||+++|+|+||||||||+++|+|+++|++|+|. ++|.+
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999765 59999995 999999999999999999999999999999999995 44532
Q ss_pred ----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..++|++|.+..++ .++.+++.... .....+
T Consensus 83 ~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l--------------------------------------------~~~~~~ 117 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIP-KAVKGKVGELL--------------------------------------------KKKDER 117 (255)
T ss_pred hhcccceeeecchhccCc-hHHHHHHHHHh--------------------------------------------chhHHH
Confidence 13678888776654 35555443210 011223
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
..+.++++.+|+.. ..++.+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.++ +.+.|||+||
T Consensus 118 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiS 196 (255)
T cd03236 118 GKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVE 196 (255)
T ss_pred HHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45677888889863 4678899999999999999999999999999999999999999888877764 3579999999
Q ss_pred cCHHHHHhhcceEEEeeC
Q 008771 314 HDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~ 331 (554)
||++++..+||+|++|++
T Consensus 197 Hd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 197 HDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred CCHHHHHHhCCEEEEECC
Confidence 999999999999999965
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-36 Score=285.50 Aligned_cols=142 Identities=30% Similarity=0.408 Sum_probs=128.2
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHH
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e 180 (554)
.|++++|+++.+++++ |+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|. .++|++|++
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~i~~~~q~~---------- 70 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--TPVYKPQYI---------- 70 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE--EEEEEcccC----------
Confidence 5899999999999984 999999999999999999999999999999999999999864 477777531
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008771 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (554)
.|
T Consensus 71 ------------------------------------------------------------------------------~L 72 (177)
T cd03222 71 ------------------------------------------------------------------------------DL 72 (177)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 19
Q ss_pred ChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 261 SGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
|||||||++|||||+.+|+++||||||++||+.+++.+.+.+.+ . +.|+|+||||++++..+||+|++|+++.
T Consensus 73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~ 149 (177)
T cd03222 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEP 149 (177)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999999999999999999888877643 3 4899999999999999999999998764
No 350
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.6e-36 Score=313.21 Aligned_cols=177 Identities=27% Similarity=0.394 Sum_probs=148.9
Q ss_pred EECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHH
Q 008771 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (554)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (554)
|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++.+++.+||.+|+......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----------- 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM----------- 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh-----------
Confidence 689999999999999999999999999998743 2599999999988899999998643110
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 008771 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (554)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~ 279 (554)
..........++.++++.+|+. ...++++.+|||||||||+|||||+.+|+
T Consensus 70 ----------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 70 ----------------------------RKVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred ----------------------------cCCCHHHHHHHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 0001122345677889999996 46789999999999999999999999999
Q ss_pred eEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 280 LLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 280 lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|||||||++||+.++..+.+.|++ .|.|+|+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~-~~g~~~~~~ 189 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA-QIGTPEEIY 189 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999999887743 4899999999999999999999999999974 556666544
No 351
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.3e-36 Score=335.29 Aligned_cols=205 Identities=24% Similarity=0.374 Sum_probs=173.4
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
++|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 46999999999963 479999999999999999999999999999999999999999999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..++|++|++.+++..|+.||+...... ......+.++
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~ 123 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVY---------------------------------------AGLERKQRLL 123 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHH
Confidence 2589999999888889999987531100 0001122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEec
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisH 314 (554)
++.++++.+|+. +..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+++++ .+.|+|+|||
T Consensus 124 ~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH 202 (648)
T PRK10535 124 RAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202 (648)
T ss_pred HHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 678889999996 457889999999999999999999999999999999999999999999888753 5899999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChh
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
+++++. .||++++|++|++. ..|..+
T Consensus 203 ~~~~~~-~~d~i~~l~~G~i~-~~g~~~ 228 (648)
T PRK10535 203 DPQVAA-QAERVIEIRDGEIV-RNPPAQ 228 (648)
T ss_pred CHHHHH-hCCEEEEEECCEEE-eecCcc
Confidence 999886 69999999999985 444444
No 352
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=291.65 Aligned_cols=196 Identities=25% Similarity=0.433 Sum_probs=154.0
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEe-cccccccCccHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS-QEFEVSMSRTVRE 180 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~-Q~~~~~~~~tv~e 180 (554)
.++.||||+|++|+++|++|+|||||||++|+|+|++.|++|.|.++|..- ++++|+ |...+.....+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 489999999999999999999999999999999999999999999986421 122211 1111111111111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008771 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (554)
- +. +......++.+...++.+.+.+-++++ ...+.+++.|
T Consensus 118 s--------------------------------------~~-v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~L 157 (325)
T COG4586 118 S--------------------------------------LE-VLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKL 157 (325)
T ss_pred h--------------------------------------HH-HHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhc
Confidence 0 00 011112345555667777778888886 4568899999
Q ss_pred ChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeCCeeee
Q 008771 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 261 SGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~ 336 (554)
|-|||+|+.||.+|+++|+||+|||||-+||+.++..+.+++++ ++.||+++||+++-+..+||||++|+.|++ +
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gql-v 236 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-V 236 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcE-e
Confidence 99999999999999999999999999999999999999888864 689999999999999999999999999997 7
Q ss_pred ccCChhHHHHH
Q 008771 337 YEGNYSQYVLE 347 (554)
Q Consensus 337 ~~G~~~~~~~~ 347 (554)
|+|+..++.++
T Consensus 237 ~dg~l~~l~~~ 247 (325)
T COG4586 237 FDGTLAQLQEQ 247 (325)
T ss_pred ecccHHHHHHH
Confidence 99988776654
No 353
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.2e-35 Score=357.91 Aligned_cols=211 Identities=21% Similarity=0.354 Sum_probs=162.2
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
+.|+++||+++|++ .++|+||||+|++||++||||+||||||||+++|+|+++ .+|+|.++|.++ +|
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 56999999999963 679999999999999999999999999999999999997 799999998653 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+||||+|.++ ..||++|+.. +.. .. -+.+...+ +... +...+..+-
T Consensus 1295 s~IpQdp~LF-~GTIR~NLdp-~~~-~t----deei~~aL------------------------~~~~---L~~~i~~lp 1340 (1490)
T TIGR01271 1295 GVIPQKVFIF-SGTFRKNLDP-YEQ-WS----DEEIWKVA------------------------EEVG---LKSVIEQFP 1340 (1490)
T ss_pred EEEeCCCccC-ccCHHHHhCc-ccC-CC----HHHHHHHH------------------------HHCC---CHHHHHhCc
Confidence 9999999885 4699999832 110 00 00000000 0111 111111111
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
. |++... ...-..||||||||++|||||+.+|+||||||||++||..+...+.+.|++ .++|||+|||+++.+..
T Consensus 1341 ~--GLdt~v-~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1341 D--KLDFVL-VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE 1417 (1490)
T ss_pred c--cccccc-ccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 1 232211 122347999999999999999999999999999999999999999988865 47999999999999975
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|++|++|++..+ |++.+.+.
T Consensus 1418 -~DrIlvL~~G~ivE~-g~p~~Ll~ 1440 (1490)
T TIGR01271 1418 -CQQFLVIEGSSVKQY-DSIQKLLN 1440 (1490)
T ss_pred -CCEEEEEECCEEEEe-CCHHHHHc
Confidence 999999999998665 66666654
No 354
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-35 Score=269.30 Aligned_cols=213 Identities=20% Similarity=0.378 Sum_probs=171.8
Q ss_pred ccEEEEeEEEEeCC---------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------
Q 008771 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------ 160 (554)
+.++++|+++.|.. ..+++.|||++++|+.+||||.||||||||.|+|+|.++|++|+|.+++..
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 56899999999843 248999999999999999999999999999999999999999999999853
Q ss_pred ----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..|-++||+|+-.++. +-++... ++.+..+ .-.+......
T Consensus 83 ~~R~k~IRMiFQDpnts~NP--Rl~iGqi-------------------------------Ld~PL~l---~T~~~~~~R~ 126 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNP--RLRIGQI-------------------------------LDFPLRL---NTDLEPEQRR 126 (267)
T ss_pred HhhhhheeeeecCCccccCh--hhhhhhH-------------------------------hcchhhh---cccCChHHHH
Confidence 3699999998643322 2222111 1100000 0112233345
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIii 312 (554)
+++-+.|..+||-++..+-++..||-||||||+|||||+.+|+++|.||..++||...+..+.++. .+.|.+.|+|
T Consensus 127 ~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV 206 (267)
T COG4167 127 KQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206 (267)
T ss_pred HHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEE
Confidence 678888999999999999999999999999999999999999999999999999999988887753 3579999999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+.++..+..++|.|++|+.|+++.| |...+.+
T Consensus 207 ~QhlG~iKHi~D~viVM~EG~vvE~-G~t~~v~ 238 (267)
T COG4167 207 TQHIGMIKHISDQVLVMHEGEVVER-GSTADVL 238 (267)
T ss_pred echhhHhhhhcccEEEEecCceeec-CChhhhh
Confidence 9999999999999999999998766 4444433
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-34 Score=276.42 Aligned_cols=195 Identities=31% Similarity=0.395 Sum_probs=155.3
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecc-cccccCccHHHHHHHhhHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE-FEVSMSRTVREEFMSAFKE 188 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~-~~~~~~~tv~e~~~~~~~~ 188 (554)
.++|+||||+|.+||++||||+||||||||+|+|+|.++|++|+|.+.| +|+++..- ..+.+.+|.+||+...-.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G---~v~~li~lg~Gf~pelTGreNi~l~~~- 115 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG---KVAPLIELGAGFDPELTGRENIYLRGL- 115 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc---eEehhhhcccCCCcccchHHHHHHHHH-
Confidence 4699999999999999999999999999999999999999999999987 35543322 345678899999853100
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (554)
...+...+++++++++.+.-.|. ++.+.|+.++|-||+-|+
T Consensus 116 --------------------------------------~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRL 156 (249)
T COG1134 116 --------------------------------------ILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARL 156 (249)
T ss_pred --------------------------------------HhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHH
Confidence 00122344555666665555553 678999999999999999
Q ss_pred HHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 269 ~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++|.|...+||+||+||-.+..|+.-.+.-.+.+. +.+.|+|+||||++.+.++||++++|++|.+ .+.|..++..
T Consensus 157 aFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i-~~~G~~~~vi 235 (249)
T COG1134 157 AFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQI-RMEGSPEEVI 235 (249)
T ss_pred HHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEE-EEcCCHHHHH
Confidence 99999999999999999999999976554443332 3469999999999999999999999999998 4667777665
Q ss_pred HHH
Q 008771 346 LEK 348 (554)
Q Consensus 346 ~~~ 348 (554)
...
T Consensus 236 ~~Y 238 (249)
T COG1134 236 PAY 238 (249)
T ss_pred HHH
Confidence 543
No 356
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-34 Score=270.67 Aligned_cols=209 Identities=24% Similarity=0.328 Sum_probs=175.6
Q ss_pred ccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCCc-----------
Q 008771 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~~----------- 161 (554)
.+++++||+.+-.++ .+|++|||+|++||+++|+||||||||||.++|+|. |.+++|+|.++|.++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 468999999999885 999999999999999999999999999999999998 478999999999763
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|..-+|.|.-++..++.+.+..+....... ..+ ..+...++.+
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~-----------------------------------~~~-~~~~~~~~~e 125 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGA-----------------------------------RGI-LPEFIKELKE 125 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhcc-----------------------------------ccc-cHHHHHHHHH
Confidence 5888999999889999988775443210000 000 1123456778
Q ss_pred HhhhcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH---HccCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~---l~~~g~tvIiisHd~~ 317 (554)
.++.++++..+++|.+. .||||||+|..|+.+++.+|++.|||||-||||.++.+.+.+. +++.+.++++|||...
T Consensus 126 ~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 126 KAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred HHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 88999999888999885 7999999999999999999999999999999999998887665 5567999999999999
Q ss_pred HHHhhc-ceEEEeeCCeeeeccCCh
Q 008771 318 FLDQLC-TKIVETEMGVSRTYEGNY 341 (554)
Q Consensus 318 ~l~~~~-d~i~~l~~g~~~~~~G~~ 341 (554)
.++.+- |++.+|-+|+++ ..|+.
T Consensus 206 ll~~i~pD~vhvl~~GrIv-~sG~~ 229 (251)
T COG0396 206 LLDYIKPDKVHVLYDGRIV-KSGDP 229 (251)
T ss_pred HHhhcCCCEEEEEECCEEE-ecCCH
Confidence 998653 999999999984 55655
No 357
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=307.86 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=182.7
Q ss_pred CCCccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 93 SISSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
..++.|.++||+|.|.+. .++++++|-|..++++++|||||||||||||+|+|.+.|..|.|... ....+++..|+..
T Consensus 385 ~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~-~H~~~~~y~Qh~~ 463 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRH-SHNKLPRYNQHLA 463 (614)
T ss_pred CCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccc-ccccchhhhhhhH
Confidence 346789999999999876 59999999999999999999999999999999999999999999865 3345777777753
Q ss_pred c--ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 172 V--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 172 ~--~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
. ..+.++.++++..+ ....-.+.++.+|.++||.
T Consensus 464 e~ldl~~s~le~~~~~~--------------------------------------------~~~~~~e~~r~ilgrfgLt 499 (614)
T KOG0927|consen 464 EQLDLDKSSLEFMMPKF--------------------------------------------PDEKELEEMRSILGRFGLT 499 (614)
T ss_pred hhcCcchhHHHHHHHhc--------------------------------------------cccchHHHHHHHHHHhCCC
Confidence 2 23345555543221 1122345678899999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
.+....++++||+|||.||++|++++..|.+|||||||||||..++..+.++|.++.++||+||||..++.+++++|++.
T Consensus 500 gd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c 579 (614)
T KOG0927|consen 500 GDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVC 579 (614)
T ss_pred ccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeeeccCChhHHHHHH
Q 008771 330 EMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 330 ~~g~~~~~~G~~~~~~~~~ 348 (554)
+++.+..++|.|..|....
T Consensus 580 ~~~~~~~~~G~i~~yk~~l 598 (614)
T KOG0927|consen 580 ENGTVTKWDGDIEIYKEHL 598 (614)
T ss_pred ccCceeecCccHHHHHHHH
Confidence 9999999999999887643
No 358
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=258.89 Aligned_cols=191 Identities=25% Similarity=0.384 Sum_probs=163.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCCc--------eEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM--------KIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~~--------~i~~ 165 (554)
++.++||+...++..+|.++||+|.+||++-|+||+|||||||+..+.|.+.++ +|++.+++... .||+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 578999999999999999999999999999999999999999999999999874 89999987643 6999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+|+..+|.+|+..++.... ........+...|++
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~----------------------------------------KG~aRr~~a~aAL~~ 121 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATL----------------------------------------KGNARRNAANAALER 121 (213)
T ss_pred eecccccccccccccceEEecCccc----------------------------------------ccHHHHhhHHHHHHH
Confidence 9999999999999999876543211 111123346677888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHH----HHHHHHHHccCCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~----~~~l~~~l~~~g~tvIiisHd~~~l~~ 321 (554)
.|+. ...++.|.+||||||-||+|-|+|+..|++|+||||+|.||..- ++|+...++..|..+|+||||.+.+.
T Consensus 122 ~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp- 199 (213)
T COG4136 122 SGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP- 199 (213)
T ss_pred hccc-hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-
Confidence 8986 45688899999999999999999999999999999999999865 55666667788999999999999997
Q ss_pred hcceEEEe
Q 008771 322 LCTKIVET 329 (554)
Q Consensus 322 ~~d~i~~l 329 (554)
...||++|
T Consensus 200 agsrVie~ 207 (213)
T COG4136 200 AGSRVIEM 207 (213)
T ss_pred CCCeeeee
Confidence 57888876
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-34 Score=267.29 Aligned_cols=153 Identities=37% Similarity=0.608 Sum_probs=128.2
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHH
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~ 179 (554)
++|+++.|++..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.+. . +. ...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~--~---~~-------~~~ 69 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI--A---KL-------PLE 69 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc--c---cC-------CHH
Confidence 68999999888999999999999999999999999999999999999999999999986421 0 00 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008771 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (554)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (554)
.+ ...+++ +.+
T Consensus 70 -~~------------------------------------------------------------~~~i~~--------~~q 80 (157)
T cd00267 70 -EL------------------------------------------------------------RRRIGY--------VPQ 80 (157)
T ss_pred -HH------------------------------------------------------------HhceEE--------Eee
Confidence 00 000111 112
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
|||||+||++||++++.+|+++||||||++||+.++.++.+.+++ .+.|+|++||+++++..+||+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999999888753 36899999999999999999999998863
No 360
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=262.87 Aligned_cols=197 Identities=27% Similarity=0.400 Sum_probs=168.1
Q ss_pred ccEEEEeEEEEe-----CCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------
Q 008771 96 SGVKLENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y-----~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------- 160 (554)
..|.++|++|+| ++. ++|+|+||+++.||+++|=||+|+|||||||+|.|.|.||+|+|.+....
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 348999999999 332 69999999999999999999999999999999999999999999875321
Q ss_pred ----------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhC
Q 008771 161 ----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (554)
Q Consensus 161 ----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (554)
..||||+|.....+..+..|.++.+.. ...+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll---------------------------------------~~gv 123 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL---------------------------------------ARGV 123 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH---------------------------------------HcCC
Confidence 258888888776666665555443210 0134
Q ss_pred CcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCC
Q 008771 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDV 307 (554)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~ 307 (554)
+.+....++..+|..++++...+.-.|.++||||||||-|||.++.+-+||||||||+.||..+++.+.+++. ..|.
T Consensus 124 ~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~Ga 203 (235)
T COG4778 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGA 203 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCc
Confidence 5566778899999999999999999999999999999999999999999999999999999999999999885 4699
Q ss_pred eEEEEecCHHHHHhhcceEEEeeC
Q 008771 308 PMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 308 tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
++|=|=||.+.=+.+|||++.+..
T Consensus 204 AlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 204 ALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred eEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999998854
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-34 Score=259.11 Aligned_cols=203 Identities=28% Similarity=0.438 Sum_probs=167.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------- 160 (554)
.+.+++.++++.|++..-.+||||.+.+||+.||||++|||||||+++|++-+.|++|+|.+...+
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 457999999999999999999999999999999999999999999999999999999999875321
Q ss_pred -----ceEEEEecccccccCccH--HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 161 -----MKIAFLSQEFEVSMSRTV--REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~tv--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
..-|+|.|+|.--..++| --|+-.-. + .++ .-..-
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERl---m---------------------a~G--------------~RHYG 125 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL---M---------------------AIG--------------ARHYG 125 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhH---H---------------------hhh--------------hhhhh
Confidence 147999999854333333 22331100 0 000 00112
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeE
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPM 309 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tv 309 (554)
.+.+.+..+|+++.++....+..|.++||||+||+.|||-|+..|.++++||||-+||......|.++++ +.+.++
T Consensus 126 ~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~ 205 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceE
Confidence 3566778889999998888888999999999999999999999999999999999999999888888764 579999
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeee
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||||||+..+.-+++|.++|.+|.++
T Consensus 206 viVTHDl~VarLla~rlmvmk~g~vv 231 (258)
T COG4107 206 VIVTHDLAVARLLADRLMVMKQGQVV 231 (258)
T ss_pred EEEechhHHHHHhhhcceeecCCCEe
Confidence 99999999999999999999999864
No 362
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.6e-34 Score=271.33 Aligned_cols=149 Identities=22% Similarity=0.288 Sum_probs=124.4
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEecccccccCccHHHHHHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVSMSRTVREEFMS 184 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~~~~~tv~e~~~~ 184 (554)
+++|+|+||+|++|++++|+||||||||||+++|. +++|+|.+.+.. ..++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57999999999999999999999999999999996 378999887531 12334333
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH
Q 008771 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
.++++.+|+.....++++.+|||||
T Consensus 68 -------------------------------------------------------~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 68 -------------------------------------------------------LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred -------------------------------------------------------HHHHHHcCCCccccCCCcCcCCHHH
Confidence 1124455665334678889999999
Q ss_pred HHHHHHHHHHccC--CCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 265 QMRMSLGKILLQD--PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 265 rqRv~LAraL~~~--p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
|||++||+||+.+ |++|||||||++||+.+++.+.+.+++ .|.|||+|||+++++. .||+|++|++|..
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 9999999999999 999999999999999999999887754 5899999999999984 7999999988654
No 363
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=291.51 Aligned_cols=247 Identities=21% Similarity=0.323 Sum_probs=185.8
Q ss_pred hHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCc
Q 008771 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGA 134 (554)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGs 134 (554)
.+.++.+...++++++..+.+.+.....+.+...+ -....+.+.+|+|.|. .+++|+++||++++|+.+++||++|+
T Consensus 223 Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~--~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~ 300 (497)
T COG5265 223 YREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWP--VRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGA 300 (497)
T ss_pred HHHHHHhhhhHHHHHHhhccchhhccCCCCccccc--cccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCC
Confidence 35678888899999888877765554333332221 2234589999999995 56899999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhH----HHHHHHHHHHHHH
Q 008771 135 GKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFK----EEMEIAGKLERVQ 200 (554)
Q Consensus 135 GKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~----~~~~~~~~~~~~~ 200 (554)
||||++++|..++.+++|.|.++|.++ -||.|||+..+ ++.|+..|+..+-. ++.....+..++
T Consensus 301 gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL-FNDti~yni~ygr~~at~eev~aaa~~aqi- 378 (497)
T COG5265 301 GKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL-FNDTIAYNIKYGRPDATAEEVGAAAEAAQI- 378 (497)
T ss_pred cHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccccee-hhhhHHHHHhccCccccHHHHHHHHHHhhh-
Confidence 999999999999999999999999764 39999999887 55688888754321 111111111111
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCe
Q 008771 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (554)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~l 280 (554)
...+..+.+.+. .....|. -.|||||||||+|||+++.+|++
T Consensus 379 -----------------------------------~~fi~~lP~gy~--t~Vgerg-lklSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 379 -----------------------------------HDFIQSLPEGYD--TGVGERG-LKLSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred -----------------------------------hHHHHhCchhhh--cccchhe-eeccCchHHHHHHHHHHhcCCCE
Confidence 111111111111 1111222 26999999999999999999999
Q ss_pred EeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 281 LLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 281 LlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+|||.||+||..+.+.+...|+. .|.|.++|.|+++.+.. ||.|++|++|+++ -.|...+.+.
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~-erg~h~~ll~ 486 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIV-ERGTHEELLA 486 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEE-ecCcHHHHHH
Confidence 999999999999999999988864 68999999999999976 9999999999984 4576665554
No 364
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=1.4e-33 Score=333.54 Aligned_cols=195 Identities=23% Similarity=0.286 Sum_probs=137.3
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc---cCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCC
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDV 307 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~ 307 (554)
.+..++ ++|+.+||.....++++.+|||||+|||+||++|+ .+|++|||||||++||+..++.|.++|+ +.|.
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~ 863 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 445566 47889999643368899999999999999999997 6999999999999999999999888764 4589
Q ss_pred eEEEEecCHHHHHhhcceEEEee------CCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 008771 308 PMVIISHDRAFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (554)
Q Consensus 308 tvIiisHd~~~l~~~~d~i~~l~------~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (554)
|||+||||++++ .+||+|++|. +|++ .+.|+.+++..... .... + ++...
T Consensus 864 TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~i-v~~Gtpeel~~~~s-~t~~----~---------l~~~l-------- 919 (1809)
T PRK00635 864 TVVIIEHNMHVV-KVADYVLELGPEGGNLGGYL-LASCSPEELIHLHT-PTAK----A---------LRPYL-------- 919 (1809)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEE-EEeCCHHHHHhccC-chHH----H---------HHHHh--------
Confidence 999999999999 7899999996 4554 56777665432100 0000 0 00000
Q ss_pred chhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCC
Q 008771 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (554)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGs 461 (554)
.... ..+ .+. +. .... ++..++++.+.....|+++||+|++|++++|+|+|||
T Consensus 920 -----------~~~~-----~~~------~~~-~~---~~~~-l~~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGs 972 (1809)
T PRK00635 920 -----------SSPQ-----ELP------YLP-DP---SPKP-PVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSAS 972 (1809)
T ss_pred -----------hccc-----ccc------ccc-cc---cccc-cccceEEEeccccccccceeEEecCCcEEEEECCCCC
Confidence 0000 000 000 00 0011 3445666665544579999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCceEEEEC
Q 008771 462 GKSTLLKLIMGLEKPRGGEVLLG 484 (554)
Q Consensus 462 GKSTLlk~L~G~~~p~~G~i~~~ 484 (554)
|||||+..+ ++. .|.+.+.
T Consensus 973 GKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 973 GKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred ChhHHHHHH--HHh--hccEeee
Confidence 999987766 332 7777664
No 365
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=267.62 Aligned_cols=209 Identities=25% Similarity=0.346 Sum_probs=162.8
Q ss_pred cEEEEeEEEEeC-----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~-----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
++.+.|+.+.|. .+++|+++||+|.+|+++.|||.||||||||+++|+|-+.|++|+|.++|.+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 356778888773 24699999999999999999999999999999999999999999999998653
Q ss_pred eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 162 KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 162 ~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
.++.|+|+|. .++.+||.||+..+.... +.. .+... + ........
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg-----~~r----gl~~~---------l---------------n~~~~~~f 127 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRG-----KKR----GLSSA---------L---------------NERRRSSF 127 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcC-----ccc----ccchh---------h---------------hHHHHHHH
Confidence 3788999984 568899999987542110 000 00000 0 00111222
Q ss_pred HHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH----HHccCCCeEEEEe
Q 008771 240 SKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIIS 313 (554)
Q Consensus 240 ~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~----~l~~~g~tvIiis 313 (554)
.+.+..+ ||+ ..++.++.-|||||||-++|+.|-+..|+||+|||-|++|||.+.+.+.+ ++.+.+.|.+|||
T Consensus 128 ~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVT 206 (263)
T COG1101 128 RERLARLGLGLE-NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVT 206 (263)
T ss_pred HHHHhhcccchh-hhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEe
Confidence 3334443 443 35577788999999999999999999999999999999999998877765 4567899999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeee-ccC
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRT-YEG 339 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~-~~G 339 (554)
|+++.+..+.+|.++|++|+++. +.|
T Consensus 207 Hnm~~Al~yG~RlImLh~G~IvlDv~g 233 (263)
T COG1101 207 HNMEDALDYGNRLIMLHSGKIVLDVTG 233 (263)
T ss_pred ccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence 99999999999999999999864 444
No 366
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.2e-34 Score=320.07 Aligned_cols=199 Identities=28% Similarity=0.341 Sum_probs=164.6
Q ss_pred CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCCc-------eEEEEecccccccCccH
Q 008771 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM-------KIAFLSQEFEVSMSRTV 178 (554)
Q Consensus 109 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~~-------~i~~v~Q~~~~~~~~tv 178 (554)
++++|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.++|... .+|||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 89999998642 58999999998889999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
+||+..... +. .. ..+..++..++++++++.+|+.+ ..+..+.
T Consensus 117 ~e~l~f~~~---------------~~--~~-------------------~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg 159 (617)
T TIGR00955 117 REHLMFQAH---------------LR--MP-------------------RRVTKKEKRERVDEVLQALGLRK-CANTRIG 159 (617)
T ss_pred HHHHHHHHh---------------cC--CC-------------------CCCCHHHHHHHHHHHHHHcCchh-cCcCccC
Confidence 999864211 00 00 00111234557888999999964 4466665
Q ss_pred ------CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-HHHhhcceEEE
Q 008771 259 ------SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLDQLCTKIVE 328 (554)
Q Consensus 259 ------~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~-~l~~~~d~i~~ 328 (554)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++ .|.|+|+++|++. .+.+.||+|++
T Consensus 160 ~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l 239 (617)
T TIGR00955 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL 239 (617)
T ss_pred CCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE
Confidence 5999999999999999999999999999999999999988887753 5899999999985 77889999999
Q ss_pred eeCCeeeeccCChhHHH
Q 008771 329 TEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 329 l~~g~~~~~~G~~~~~~ 345 (554)
|++|++ .|.|++++..
T Consensus 240 l~~G~~-v~~G~~~~~~ 255 (617)
T TIGR00955 240 MAEGRV-AYLGSPDQAV 255 (617)
T ss_pred eeCCeE-EEECCHHHHH
Confidence 999987 5788877654
No 367
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.9e-34 Score=339.80 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=169.4
Q ss_pred ccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC---CCceeEEEcCCCc------e
Q 008771 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~~~~~------~ 162 (554)
..++++||++.|+ ++.+|+|||++|++||++||+||||||||||+++|+|..+ |++|+|.++|.+. .
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3589999999995 4579999999999999999999999999999999999997 7899999998542 5
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|||+|++.+++..||+|++..... +.. . ......+..++++++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~---------------l~~-~--------------------~~~~~~~~~~~v~~~ 881 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAY---------------LRQ-P--------------------KSVSKSEKMEYVEEV 881 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHH---------------hCC-C--------------------CCCCHHHHHHHHHHH
Confidence 8999999888888999999853210 000 0 001112234567888
Q ss_pred hhhcCCCccccCCCCC----CCChhHHHHHHHHHHHccCCC-eEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEec
Q 008771 243 MPELGFTADDGDRLVA----SFSSGWQMRMSLGKILLQDPD-LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~----~LSGGqrqRv~LAraL~~~p~-lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisH 314 (554)
++.+|+. +..++.+. .|||||||||+||++|+.+|+ ||||||||+|||..+...+.+.|++ .|.|||+++|
T Consensus 882 l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H 960 (1394)
T TIGR00956 882 IKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960 (1394)
T ss_pred HHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 9999986 45577766 799999999999999999997 9999999999999999998888753 5899999999
Q ss_pred CHHH-HHhhcceEEEeeCC-eeeeccCC
Q 008771 315 DRAF-LDQLCTKIVETEMG-VSRTYEGN 340 (554)
Q Consensus 315 d~~~-l~~~~d~i~~l~~g-~~~~~~G~ 340 (554)
+++. +.+.+|+|++|++| ++ .|.|+
T Consensus 961 ~~~~~~~~~~D~vl~L~~GG~i-v~~G~ 987 (1394)
T TIGR00956 961 QPSAILFEEFDRLLLLQKGGQT-VYFGD 987 (1394)
T ss_pred CCCHHHHHhcCEEEEEcCCCEE-EEECC
Confidence 9986 45679999999987 65 45554
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.6e-33 Score=330.96 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=167.9
Q ss_pred ccEEEEeEEEEeC-------------CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC--CceeEEEcCCC
Q 008771 96 SGVKLENISKSYK-------------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~-------------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~~~~ 160 (554)
..+.++||++.++ .+.+|+|||++|++|++++|+|+|||||||||++|+|..++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 3589999998873 23699999999999999999999999999999999999763 78999998853
Q ss_pred c-------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 161 M-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 161 ~-------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
. .+|||+|++.+++..||+|++..... +. .. ......
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~---------------lr--~~-------------------~~~~~~ 989 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAF---------------LR--LP-------------------KEVSKE 989 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHH---------------hC--CC-------------------CCCCHH
Confidence 2 48999999888889999999853210 00 00 000112
Q ss_pred cHHHHHHHHhhhcCCCccccCCCC-----CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q 305 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~-----~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~ 305 (554)
+..++++++++.+||.+ ..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.+...+.+.|++ .
T Consensus 990 ~~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 990 EKMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HHHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 23456788899999863 446654 58999999999999999999999999999999999999998887753 5
Q ss_pred CCeEEEEecCHH-HHHhhcceEEEeeC-CeeeeccCCh
Q 008771 306 DVPMVIISHDRA-FLDQLCTKIVETEM-GVSRTYEGNY 341 (554)
Q Consensus 306 g~tvIiisHd~~-~l~~~~d~i~~l~~-g~~~~~~G~~ 341 (554)
|.|||+++|+++ .+.+.||++++|++ |++ .|.|+.
T Consensus 1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~-v~~G~~ 1105 (1470)
T PLN03140 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV-IYSGPL 1105 (1470)
T ss_pred CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE-EEECCc
Confidence 899999999998 46788999999986 665 466653
No 369
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-33 Score=255.23 Aligned_cols=181 Identities=26% Similarity=0.375 Sum_probs=150.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~ 167 (554)
+++.+|++..-+.+.+|.++||++.+||.+-|.||||||||||||+|+|+.+|++|+|.+++.+. .+-|+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 46788999888899999999999999999999999999999999999999999999999987543 234555
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
-.+.+-..+|+.||+.+.- .+....-...+.+.+..+|
T Consensus 82 H~~giK~eLTa~ENL~F~~------------------------------------------~~~~~~~~~~i~~Al~~vg 119 (209)
T COG4133 82 HQPGIKTELTALENLHFWQ------------------------------------------RFHGSGNAATIWEALAQVG 119 (209)
T ss_pred ccccccchhhHHHHHHHHH------------------------------------------HHhCCCchhhHHHHHHHcC
Confidence 5556667788998875320 0001112345667788899
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
|. +..|.++.+||-|||+||+|||.+++.+++.||||||++||...+..|...+. ..|+.||.+||..-.+.
T Consensus 120 L~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 120 LA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred cc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 85 56799999999999999999999999999999999999999999999988875 36899999999976654
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=5.7e-32 Score=312.47 Aligned_cols=247 Identities=23% Similarity=0.353 Sum_probs=183.1
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccC-CCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCC
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQS-NTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNG 133 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NG 133 (554)
..+.....++||+.+..+.+.+ ........ ++..=+..+.|+++|++.+|.. ..||+||||+|++||++||||+.|
T Consensus 1098 ~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1098 SELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred HHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCC
Confidence 3455666788999887664433 00000011 1111144577999999999954 379999999999999999999999
Q ss_pred ccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008771 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (554)
Q Consensus 134 sGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 203 (554)
||||||+.+|-++.+|.+|+|.+||.++ +++.+||||.+ |+.||+.|+- ++.+.
T Consensus 1177 aGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL-FsGTvR~NLD-Pf~e~-------------- 1240 (1381)
T KOG0054|consen 1177 AGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL-FSGTVRFNLD-PFDEY-------------- 1240 (1381)
T ss_pred CCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce-ecCccccccC-ccccc--------------
Confidence 9999999999999999999999999764 69999999988 6779999972 22110
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
.|.+. +++++...+...+.+.- .||+.. ....-.++|-||||.++|||||+++++||+|
T Consensus 1241 ----sD~~I--------------W~ALe~~~Lk~~v~~~p--~~Ld~~-v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1241 ----SDDEI--------------WEALERCQLKDVVSSLP--GGLDSE-VSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred ----CHHHH--------------HHHHHHhChHHHHhhCC--cCCCce-ecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 00000 00011111222222211 123221 2223368999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChh
Q 008771 284 DEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
||+|++.|+++-..+.+.+++ .++|||.|.|++..+.+ ||||+||++|++..|+-++.
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHH
Confidence 999999999999999998876 48999999999999986 99999999999999876654
No 371
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=1.3e-31 Score=262.82 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=84.2
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisH 314 (554)
.++++.+|+.....++++.+|||||+|||+||+||+.+| ++|||||||++||+.++..+.+.++ +.|.|+|+|||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 457888999754578999999999999999999999998 5999999999999999999888764 45899999999
Q ss_pred CHHHHHhhcceEEEe------eCCeee
Q 008771 315 DRAFLDQLCTKIVET------EMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l------~~g~~~ 335 (554)
|++++. +||+|++| ++|+++
T Consensus 198 ~~~~~~-~~d~i~~l~~~~~~~~G~iv 223 (226)
T cd03270 198 DEDTIR-AADHVIDIGPGAGVHGGEIV 223 (226)
T ss_pred CHHHHH-hCCEEEEeCCCccccCCEEE
Confidence 999984 89999999 777764
No 372
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-31 Score=269.36 Aligned_cols=207 Identities=22% Similarity=0.427 Sum_probs=176.0
Q ss_pred CCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 93 SISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
-.++.+-+.||+|.|+ .+++|++++|-|.-..++|||||||.||||||++|.|.+.|..|+.+-+ ...+||++.|+..
T Consensus 582 L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-hrL~iG~FdQh~~ 660 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-HRLRIGWFDQHAN 660 (807)
T ss_pred CCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-ceeeeechhhhhH
Confidence 3457789999999995 5689999999999999999999999999999999999999999998765 4578999999863
Q ss_pred --cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 172 --VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 172 --~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+....|..|+++..|. --.+.+++.|..+||.
T Consensus 661 E~L~~Eetp~EyLqr~FN----------------------------------------------lpyq~ARK~LG~fGL~ 694 (807)
T KOG0066|consen 661 EALNGEETPVEYLQRKFN----------------------------------------------LPYQEARKQLGTFGLA 694 (807)
T ss_pred HhhccccCHHHHHHHhcC----------------------------------------------CChHHHHHHhhhhhhh
Confidence 2233455555432210 1134567788899997
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
.+...-.+..|||||+-||+||-.-+..|||||||||||+||.+++..|.+.++++.+.|||||||-.++.+.--.+|++
T Consensus 695 sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVv 774 (807)
T KOG0066|consen 695 SHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVV 774 (807)
T ss_pred hccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEE
Confidence 66555677899999999999999999999999999999999999999999999999999999999999998877789999
Q ss_pred eCCeeeeccCChhHHHH
Q 008771 330 EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 330 ~~g~~~~~~G~~~~~~~ 346 (554)
++..+-...|.|++|..
T Consensus 775 E~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 775 ENQGIDEIDGDFEDYKK 791 (807)
T ss_pred ccCChhhccccHHHHHH
Confidence 98888889999999865
No 373
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.3e-31 Score=272.04 Aligned_cols=210 Identities=25% Similarity=0.436 Sum_probs=179.8
Q ss_pred CCCccEEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc
Q 008771 93 SISSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
..++.+++.+|+|.|+.. .++.++++.+.--++++++|+||+||||++|++.|...|..|.+.+.+ ..+|+|.+|..
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-r~ri~~f~Qhh 436 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-RLRIKYFAQHH 436 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-cceecchhHhh
Confidence 456789999999999644 489999999999999999999999999999999999999999988774 56899999985
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.-+.+..|... +.... .-.-..++.++..+..+|++.
T Consensus 437 vd~l~~~v~~v---------------------------------------d~~~~----~~pG~~~ee~r~hl~~~Gl~g 473 (582)
T KOG0062|consen 437 VDFLDKNVNAV---------------------------------------DFMEK----SFPGKTEEEIRRHLGSFGLSG 473 (582)
T ss_pred hhHHHHHhHHH---------------------------------------HHHHH----hCCCCCHHHHHHHHHhcCCCc
Confidence 43322222110 00000 011225778899999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEee
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+...+++..||||||-||++|.+...+|.+|+|||||||||.++...|...|+.+++.||+||||.+|+..+|+.+|+.+
T Consensus 474 ~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve 553 (582)
T KOG0062|consen 474 ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVE 553 (582)
T ss_pred hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEc
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccCChhHHHH
Q 008771 331 MGVSRTYEGNYSQYVL 346 (554)
Q Consensus 331 ~g~~~~~~G~~~~~~~ 346 (554)
+|++..+.|..++|..
T Consensus 554 ~g~vt~ieg~~~~yKk 569 (582)
T KOG0062|consen 554 DGKVTPIEGGIDKYKK 569 (582)
T ss_pred CCcEEeeeccHHHHHH
Confidence 9999999998877654
No 374
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=299.38 Aligned_cols=206 Identities=28% Similarity=0.468 Sum_probs=179.1
Q ss_pred ccEEEEeEEEEeCCee-eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eE
Q 008771 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~-~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i 163 (554)
..+.++|+++.|+.+. +++++||.|++||+.|+.|+|||||||++++|+|..+|++|++.+.|.+. .+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4589999999998776 99999999999999999999999999999999999999999999977543 39
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
||+||+..+...+|.+|.+... .+...+...++.+.+..++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~---------------------------------------arlrG~~~~di~~~v~~ll 683 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFY---------------------------------------ARLRGLPRSDIGSAIEKLL 683 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHH---------------------------------------HHHcCCChhHHHHHHHHHH
Confidence 9999999998899999876421 1112344456677799999
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+||. +..++++..+|||+|+|+.+|.|++.+|++++|||||+|+||.+++.+++.++ +.|+.+|++||.+++++
T Consensus 684 ~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 684 RLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAE 762 (885)
T ss_pred HHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 999996 46788899999999999999999999999999999999999999999998874 34559999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChh
Q 008771 321 QLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
.+|||+.+|.+|++.- -|+..
T Consensus 763 aLCtR~aImv~G~l~c-iGs~q 783 (885)
T KOG0059|consen 763 ALCTRTAIMVIGQLRC-IGSPQ 783 (885)
T ss_pred HHhhhhheeecCeeEE-ecChH
Confidence 9999999999998743 35544
No 375
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=1e-29 Score=290.02 Aligned_cols=180 Identities=20% Similarity=0.318 Sum_probs=134.5
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tv 309 (554)
+..++. +|..+||....+++++.+|||||+|||+||++|+.+| ++|||||||++||+...+.|.+.|+ +.|.||
T Consensus 466 i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TV 544 (943)
T PRK00349 466 IRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTL 544 (943)
T ss_pred HHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 445554 7889999644479999999999999999999999997 9999999999999999999988764 468999
Q ss_pred EEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Q 008771 310 VIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (554)
|+|+||++++. .||+|++| ++|++ .+.|++.++........ ..| +. +
T Consensus 545 IvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~l~----~~~----------------l~-----~ 597 (943)
T PRK00349 545 IVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNSLT----GQY----------------LS-----G 597 (943)
T ss_pred EEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhhee----ehh----------------hc-----c
Confidence 99999999996 59999999 77776 67788776533110000 000 00 0
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcH
Q 008771 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463 (554)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGK 463 (554)
+. ....+ .. . .....+.|++++++. ..++++||+|++||+++|+|+|||||
T Consensus 598 ~~--------------~~~~~--~~-------~-~~~~~~~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGK 648 (943)
T PRK00349 598 KK--------------KIEVP--KE-------R-RKGNGKFLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGK 648 (943)
T ss_pred cc--------------ccccc--cc-------c-cCCCcceEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCH
Confidence 00 00000 00 0 011235788998873 25899999999999999999999999
Q ss_pred HHHHHHHh
Q 008771 464 STLLKLIM 471 (554)
Q Consensus 464 STLlk~L~ 471 (554)
|||++.+.
T Consensus 649 STLl~~~l 656 (943)
T PRK00349 649 STLINETL 656 (943)
T ss_pred HHHHHHHH
Confidence 99998763
No 376
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1e-29 Score=281.57 Aligned_cols=209 Identities=27% Similarity=0.371 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC---CceeEEEcCCC-------c
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP---DSGNVIKAKSN-------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p---~~G~I~~~~~~-------~ 161 (554)
.+.++|++....+ +.+|+|||.++++||+.||+||+||||||||++|+|.... .+|+|.++|.. .
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 4788898887743 5799999999999999999999999999999999999975 79999999932 3
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.+|||.|+..+++.+||+|.+..... +. ....+...+.++++++
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~---------------lr---------------------lp~~~~~~~k~~~V~~ 148 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSAL---------------LR---------------------LPSSLSKEEKRERVEE 148 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHH---------------hc---------------------CCCCCCHHHHHHHHHH
Confidence 59999999999999999998864211 00 0001233556788999
Q ss_pred HhhhcCCCccccCCCCC-----CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 242 LMPELGFTADDGDRLVA-----SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-----~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
++.++|+. .-.+..+. .+|||||+||+||.-|+.+|.||+|||||+|||..+...+.+.|+ +.|+|||++=
T Consensus 149 vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tI 227 (613)
T KOG0061|consen 149 VISELGLE-KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTI 227 (613)
T ss_pred HHHHcCCh-hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEE
Confidence 99999997 45566665 599999999999999999999999999999999999888887765 3499999999
Q ss_pred cCH-HHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 314 HDR-AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 314 Hd~-~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
|.+ ..+.+..|++++|..|+. .|.|...+
T Consensus 228 HQPss~lf~lFD~l~lLs~G~~-vy~G~~~~ 257 (613)
T KOG0061|consen 228 HQPSSELFELFDKLLLLSEGEV-VYSGSPRE 257 (613)
T ss_pred eCCcHHHHHHHhHhhhhcCCcE-EEecCHHH
Confidence 997 577788999999999965 68786653
No 377
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.9e-29 Score=283.99 Aligned_cols=171 Identities=23% Similarity=0.308 Sum_probs=127.3
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~ 316 (554)
.|..+||....+++++.+|||||+|||+||++|+.+| ++|||||||++||+.....|.+.|+ +.|.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3777888643468999999999999999999999986 8999999999999999999888764 4689999999999
Q ss_pred HHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHH
Q 008771 317 AFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (554)
Q Consensus 317 ~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (554)
+++. .||+|++| ++|++ .+.|++.++...... . ...+. .++.
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~I-v~~g~~~el~~~~~~------------------l---t~~~l----~~~~----- 597 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEV-VASGTPEEILANPDS------------------L---TGQYL----SGKK----- 597 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEE-eeccCHHHHhcCchh------------------e---eeecc----cccc-----
Confidence 9996 89999999 77765 567776543221000 0 00000 0000
Q ss_pred HHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHH
Q 008771 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468 (554)
Q Consensus 391 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk 468 (554)
....+ . .......++|++++++. ..|+++||+|+.||+++|+|+||||||||++
T Consensus 598 ---------~~~~~--~--------~~~~~~~~~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 598 ---------KIEVP--K--------ERRPGNGKFLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred ---------ccccc--c--------cccCCCcceEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 00000 0 00011234789999874 2589999999999999999999999999998
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=6.7e-30 Score=230.85 Aligned_cols=124 Identities=38% Similarity=0.629 Sum_probs=102.3
Q ss_pred EEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEEecccccccCccHHHHH
Q 008771 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEF 182 (554)
Q Consensus 113 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v~Q~~~~~~~~tv~e~~ 182 (554)
|+||||+|++|++++|+|+||||||||+++|+|.++|++|+|.+++.+ ..++|++|++.++...||.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999999999998743 2599999998888888998872
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC---ccccCCCCCC
Q 008771 183 MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT---ADDGDRLVAS 259 (554)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~ 259 (554)
.. .++.++++.+++. ....++.+..
T Consensus 81 ~~----------------------------------------------------~~~~~~l~~l~~~~~~~~~~~~~~~~ 108 (137)
T PF00005_consen 81 SD----------------------------------------------------ERIEEVLKKLGLEDLLDRKIGQRASS 108 (137)
T ss_dssp HH----------------------------------------------------HHHHHHHHHTTHGGGTGSBGTSCGGG
T ss_pred cc----------------------------------------------------ccccccccccccccccccccccccch
Confidence 10 1122233333332 2334555599
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCC
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTN 288 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~ 288 (554)
|||||||||+||+||+.+|++||||||||
T Consensus 109 LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 109 LSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99999999999999999999999999997
No 379
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.4e-29 Score=243.06 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=122.1
Q ss_pred EceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc---------eeEEEcCCC-------ceEEEEecccccccCcc
Q 008771 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSN-------MKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 114 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~---------G~I~~~~~~-------~~i~~v~Q~~~~~~~~t 177 (554)
++++|++.+| +++|+||||||||||+++|+|+.+|.. |++.+.+.+ ..|+|+||++..++...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 6689999999 999999999999999999999987653 345555433 36999999987652100
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
...++.++++. .+..++++
T Consensus 93 ---------------------------------------------------------~~~~~~~~l~~----~~~~~~~~ 111 (197)
T cd03278 93 ---------------------------------------------------------SQGDVSEIIEA----PGKKVQRL 111 (197)
T ss_pred ---------------------------------------------------------ehhhHHHHHhC----CCccccch
Confidence 00122233333 12446788
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 258 ASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
.+||||||||++||++|+ .+|+++||||||++||+.....+.+.+++ .+.|||+||||++++ ..||+++.+..
T Consensus 112 ~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999999986 46799999999999999999999988764 368999999999988 47999999853
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=1e-28 Score=292.50 Aligned_cols=169 Identities=21% Similarity=0.355 Sum_probs=126.0
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~ 317 (554)
|..+||.....++.+.+|||||+|||+||+||+.+| ++|||||||++||+...+.|.+.|+ +.|.|||+||||++
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~ 539 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ 539 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 457788644468999999999999999999999999 8999999999999999999888765 46899999999999
Q ss_pred HHHhhcceEEEee------CCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Q 008771 318 FLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKK 391 (554)
Q Consensus 318 ~l~~~~d~i~~l~------~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (554)
++ ++||+|++|. +|++ .+.|+++++....... ...+....
T Consensus 540 vi-~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~l---------------------~~~~l~~~----------- 585 (1809)
T PRK00635 540 MI-SLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDSL---------------------TAKYLRQE----------- 585 (1809)
T ss_pred HH-HhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHHH---------------------HHHHhcCc-----------
Confidence 55 7899999997 4454 5678776654311100 00000000
Q ss_pred HHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHH
Q 008771 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468 (554)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk 468 (554)
...+. +.........+++++++. ..|+++||+|++||+++|+|+||||||||++
T Consensus 586 ---------~~~~~---------~~~~~~~~~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 586 ---------LTIPI---------PEKRTNSLGTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred ---------ccccC---------cccccCCCCeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 00000 000011234688888873 3689999999999999999999999999999
No 381
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.3e-29 Score=235.26 Aligned_cols=128 Identities=34% Similarity=0.464 Sum_probs=114.3
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNY 492 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y 492 (554)
.|+++|++++|++..+|+++|++|.+||+++|+||+|||||||||+|.++..|++|+|.++|.++ ++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 58999999999999999999999999999999999999999999999999999999999998544 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc---c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|+. .|+|.+||.||+..+.. . ...+.+..+|+++|+ .+..+.+|..|||||||||||
T Consensus 82 VFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL-~~ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 82 VFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL-ADKADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred ecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCc-hhhhhhCccccCcHHHHHHHH
Confidence 99985 58999999999987742 1 223567889999999 467999999999999999986
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=7.1e-28 Score=239.56 Aligned_cols=218 Identities=19% Similarity=0.236 Sum_probs=137.5
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHH--------CC--CCCCceeEEEcCCC-ceEEEEecccccc-cCccH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA--------GQ--EEPDSGNVIKAKSN-MKIAFLSQEFEVS-MSRTV 178 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~--------G~--~~p~~G~I~~~~~~-~~i~~v~Q~~~~~-~~~tv 178 (554)
.-|+|||++|+.|..++|+|.+|||||||++.+. +. ..|..++...+... ..+-+|.|.|.-. +.-++
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999652 11 12444443322211 2467888876322 12222
Q ss_pred ------HHHHHHhhHH---HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 179 ------REEFMSAFKE---EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 179 ------~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
++++...|.+ -..+. .+.+.-... .....+...-...+...+. ..+ .. ..++.++|+.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~--~~~l~~~~~-g~~i~~v~~ltv~e~~~~~---~~~--~~-~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYN--RETLEVRYK-GKSIADVLDMTVEEALEFF---ENI--PK-IARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccC--HHHHhcCcC-CCCHHHHhcCCHHHHHHHH---Hhh--hh-HHHHHHHHHHcCCc
Confidence 2222211100 00000 000000000 0000000000000110110 011 11 24567789999997
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccC---CCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~ 323 (554)
....++++.+|||||+||++||++|+.+ |+++||||||++||+..+..+.+.++ +.|.|+|+||||++++. .|
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~a 238 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CA 238 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hC
Confidence 5457899999999999999999999996 79999999999999999999888765 35899999999999996 69
Q ss_pred ceEEEe------eCCeeeeccC
Q 008771 324 TKIVET------EMGVSRTYEG 339 (554)
Q Consensus 324 d~i~~l------~~g~~~~~~G 339 (554)
|+|++| ++|++ .+.|
T Consensus 239 D~ii~Lgp~~g~~~G~i-v~~G 259 (261)
T cd03271 239 DWIIDLGPEGGDGGGQV-VASG 259 (261)
T ss_pred CEEEEecCCcCCCCCEE-EEeC
Confidence 999999 67776 3444
No 383
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-28 Score=236.66 Aligned_cols=129 Identities=38% Similarity=0.498 Sum_probs=114.7
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEeccc
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~ 497 (554)
..++++++++.|+...+|+++||+|.+||+++|+||+||||||||++|+|+.+|++|+|.++|..+ .++|++|++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 358899999999988899999999999999999999999999999999999999999999998765 468999985
Q ss_pred ccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 498 AEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.|.|.+||+||+..+... ...+.+.++|+.+|+. +..+++|++|||||||||+|
T Consensus 82 --~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVai 141 (248)
T COG1116 82 --ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAI 141 (248)
T ss_pred --cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHH
Confidence 588999999999866432 1234689999999995 47899999999999999985
No 384
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=7.1e-28 Score=239.13 Aligned_cols=182 Identities=20% Similarity=0.288 Sum_probs=125.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHH----------------CCCCCCce--------e
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA----------------GQEEPDSG--------N 153 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~----------------G~~~p~~G--------~ 153 (554)
|+++|. ++|++..++.+++ |++++|+||||||||||+++|+ +++.+.+| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 678887 5788888898887 7899999999999999999998 44555555 4
Q ss_pred EEEcCCC-------------ceEEEEecccccccC-ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 008771 154 VIKAKSN-------------MKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219 (554)
Q Consensus 154 I~~~~~~-------------~~i~~v~Q~~~~~~~-~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (554)
|.+++.+ ..++|++|++.++.. .|..+.. ..+. ..
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~-~~l~-----------------~~------------- 126 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVM-NLLE-----------------SA------------- 126 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHH-HHHH-----------------Hc-------------
Confidence 4444311 126777777665542 3443321 1100 00
Q ss_pred HHHHHHHHHhCCccc-----HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCC
Q 008771 220 FDLLQRKAQAVNLDT-----LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHL 290 (554)
Q Consensus 220 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~L 290 (554)
.+.... ...++.++ +++. ...++++.+|||||+||++||+||+ .+|++|||||||++|
T Consensus 127 ---------gl~~~~~~~~~~qg~i~~l---~~l~-~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~l 193 (243)
T cd03272 127 ---------GFSRSNPYYIVPQGKINSL---TNMK-QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAAL 193 (243)
T ss_pred ---------CCCCCCCcEEEEcCchHHh---hhcc-ccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCC
Confidence 000000 01112222 2232 2346778999999999999999996 368999999999999
Q ss_pred CHHHHHHHHHHHccC--CCeEEEEecCHHHHHhhcceEEEee
Q 008771 291 DLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 291 D~~~~~~l~~~l~~~--g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
|+.+.+.+.+.|++. +.++|++||+.+ +.++||+|++|.
T Consensus 194 d~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l~ 234 (243)
T cd03272 194 DAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEEE
Confidence 999999998887653 678888888866 557999999984
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=3.4e-27 Score=253.62 Aligned_cols=191 Identities=29% Similarity=0.438 Sum_probs=152.7
Q ss_pred CccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
...|+++|++..-++ ...+++.||+|++||.+-|.|+||||||||+|+|+|+-|.-+|+|.+. .+..+-|+||.|.+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-~~~~~lflpQ~PY~- 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-ADSALLFLPQRPYL- 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-CCCceEEecCCCCC-
Confidence 567999999999864 689999999999999999999999999999999999999999999887 45568999999987
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc---
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--- 250 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--- 250 (554)
+..|.+|.++.+-... +--++.+.++|.++||++
T Consensus 468 p~GtLre~l~YP~~~~-------------------------------------------~~~d~~l~~vL~~vgL~~L~~ 504 (604)
T COG4178 468 PQGTLREALCYPNAAP-------------------------------------------DFSDAELVAVLHKVGLGDLAE 504 (604)
T ss_pred CCccHHHHHhCCCCCC-------------------------------------------CCChHHHHHHHHHcCcHHHHH
Confidence 5559999886542110 001122233333333321
Q ss_pred --cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceE
Q 008771 251 --DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 --~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i 326 (554)
+..++--..||+||||||++||+|+++|++++|||.|++||+++...+.+.+++ .+.|||-|+|+.... .+.++.
T Consensus 505 rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~-~~h~~~ 583 (604)
T COG4178 505 RLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW-NFHSRQ 583 (604)
T ss_pred HHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH-HHHhhh
Confidence 011112247999999999999999999999999999999999999999999988 799999999998776 467777
Q ss_pred EEeeC
Q 008771 327 VETEM 331 (554)
Q Consensus 327 ~~l~~ 331 (554)
+.+.+
T Consensus 584 l~l~~ 588 (604)
T COG4178 584 LELLD 588 (604)
T ss_pred eeecc
Confidence 77754
No 386
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=1.2e-27 Score=232.74 Aligned_cols=182 Identities=19% Similarity=0.200 Sum_probs=127.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEE-CCCEEEEECCCCccHHHHHHHHHC-CCCCCceeEEEc---------CCCceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVK-KGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKA---------KSNMKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~-~Ge~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~---------~~~~~i~~ 165 (554)
.|+++|+. +|.+. .+|+|... +|++++|+|+||||||||+++|++ ++.+..+..... .....|++
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 38899998 77554 45566654 589999999999999999999995 433443433321 11236889
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|+....+ ++..+. ... .+...+.+ .+..
T Consensus 81 ~f~~~~~~~--~~~r~~--gl~--------------------------------------------~~~~~~~~--~l~~ 110 (213)
T cd03279 81 TFQLGGKKY--RVERSR--GLD--------------------------------------------YDQFTRIV--LLPQ 110 (213)
T ss_pred EEEECCeEE--EEEEec--CCC--------------------------------------------HHHHHHhh--hhhh
Confidence 998864321 111110 000 00000000 0111
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHcc----------CCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEE
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVII 312 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~----------~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIii 312 (554)
.++. ...++++.+|||||+||++||+||+. +|++|||||||++||+.+...+.+++++ .+.|+|+|
T Consensus 111 g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~i 189 (213)
T cd03279 111 GEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVI 189 (213)
T ss_pred cchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1221 34467889999999999999999985 6799999999999999999988877643 47899999
Q ss_pred ecCHHHHHhhcceEEEeeCCe
Q 008771 313 SHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~ 333 (554)
|||++++..+||+|+++++|.
T Consensus 190 tH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 190 SHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred ECchHHHHhhCcEEEEEecCC
Confidence 999999999999999999875
No 387
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.4e-27 Score=250.14 Aligned_cols=205 Identities=21% Similarity=0.365 Sum_probs=170.5
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------e
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------K 162 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~ 162 (554)
..+.++++|++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++++|+|.++|... .
T Consensus 260 ~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 260 GEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3456888888743 268999999999999999999999999999999999999999999998632 5
Q ss_pred EEEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 163 IAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 163 i~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
|+|||.|- .++...+|.+|+..+.... . .... .++.....+.+
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~-------------~--------------------~~~~-~i~~~~e~~~~ 381 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRR-------------F--------------------SRRG-LIDRRKERALA 381 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhh-------------h--------------------cccc-ccChHHHHHHH
Confidence 99999874 5677889999985431000 0 0000 12233345567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~ 316 (554)
+++...+++.....+.++.+||||.||||.|||.|+.+|+||||||||-|.|.-++..+.++++ +.|++||+||-++
T Consensus 382 ~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 382 ERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred HHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 7888889998778889999999999999999999999999999999999999999988888765 5799999999999
Q ss_pred HHHHhhcceEEEeeCCeeee
Q 008771 317 AFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~ 336 (554)
.++..+||||++|++|++.-
T Consensus 462 pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 462 PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999853
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=242.46 Aligned_cols=186 Identities=26% Similarity=0.438 Sum_probs=144.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccC
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (554)
..++..++++.|++.. |+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ..+.+|+|=||-....+.
T Consensus 341 ~lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 341 TLVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYKPQYISPDYD 415 (591)
T ss_pred eeeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----CccceEeecceeecCCCC
Confidence 3456666666666432 33234456678999999999999999999999999999998 356789999998877788
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCC
Q 008771 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (554)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (554)
.||.+.+....... ..+ .-...+++.-|.|+ ...++
T Consensus 416 gtV~~~l~~~~~~~-------------~~~------------------------------s~~~~ei~~pl~l~-~i~e~ 451 (591)
T COG1245 416 GTVEDLLRSAIRSA-------------FGS------------------------------SYFKTEIVKPLNLE-DLLER 451 (591)
T ss_pred CcHHHHHHHhhhhh-------------ccc------------------------------chhHHhhcCccchH-HHHhc
Confidence 89998775432110 000 00122345556664 46689
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH----HccCCCeEEEEecCHHHHHhhcceEEEee
Q 008771 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
++.+|||||.|||+||.+|..++|++|||||+++||.+.+-..... +.+.++|.++|.||+.+++.++||+++++
T Consensus 452 ~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9999999999999999999999999999999999999877655444 44578999999999999999999999985
No 389
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.6e-27 Score=227.32 Aligned_cols=132 Identities=32% Similarity=0.501 Sum_probs=119.1
Q ss_pred ceEEEeeeeEecCCcc----ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee---------
Q 008771 423 SVVTIKNLEFGYEDRL----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~----~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~--------- 489 (554)
+.|+++|+++.|+... ++++|||+|.+||++||+|++|||||||+++|+|+.+|++|+|.++|..+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4689999999998766 999999999999999999999999999999999999999999999995432
Q ss_pred --EEEEecccccCCCCCCCHHHHHHhhccc----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 --PNYFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 --~~y~~Q~~~~~l~~~~tv~e~l~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+.+++|+|...++|..||.+.|.++... ..+.++.++|..+|++.+.++|.|..|||||+||+||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHH
Confidence 4589999999999999999999987542 2345689999999999999999999999999999985
No 390
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.2e-27 Score=236.76 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=136.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEcCC-------------CceE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKS-------------NMKI 163 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~~~-------------~~~i 163 (554)
|.++|. ++|.+..++.+++ ..+++|||+||||||||+++|++++.+. .|++.+.+. ...|
T Consensus 6 ~~~~~f-~~~~~~~~~~~~~-----~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISGFD-----PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeeccCC-----CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 677777 6776655443332 4599999999999999999999999876 456665432 1268
Q ss_pred EEEecccc---------cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC-cc
Q 008771 164 AFLSQEFE---------VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LD 233 (554)
Q Consensus 164 ~~v~Q~~~---------~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 233 (554)
++++|++. +.+..||.+++....... ..++ ..
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~--------------------------------------~~in~~~ 121 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNK--------------------------------------YLINGHR 121 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceE--------------------------------------EEECCEE
Confidence 99999852 233556655542110000 0001 11
Q ss_pred cHHHHHHHHhhhcCCCc-------------------cccCCCCCCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCC
Q 008771 234 TLDAKVSKLMPELGFTA-------------------DDGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHL 290 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~-------------------~~~~~~~~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~L 290 (554)
...+++.++|+.+|+.. ...++++.+||||||||++||+||+ .+|++|||||||++|
T Consensus 122 ~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~l 201 (251)
T cd03273 122 AQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAAL 201 (251)
T ss_pred eeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCC
Confidence 23356666777777752 2346788999999999999999997 578999999999999
Q ss_pred CHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 291 DLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 291 D~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
|+..++++.+.|++ .|.|+|+|||+.+.+. .||+|+-+.
T Consensus 202 d~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 202 DLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 99999999998864 4789999999976665 699998774
No 391
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.5e-26 Score=230.34 Aligned_cols=233 Identities=22% Similarity=0.313 Sum_probs=161.0
Q ss_pred HHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccH
Q 008771 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGK 136 (554)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGK 136 (554)
++..|+.+.+++-+..-.++... -++..+.+. =..|+++|+.|.|..+ -=+..||++|++||++.|||.|||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~----~~~~q~~p~-~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKAD----FPRPQAFPD-WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCcccc----CCCCCcCCc-ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcH
Confidence 35566666666644433332111 111111111 2459999999999765 56889999999999999999999999
Q ss_pred HHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHH--HHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHH
Q 008771 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214 (554)
Q Consensus 137 STLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (554)
|||+++++|+++|++|+|+++|.... ..+..++ +.++. ..|.-++.
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~------------~e~ledYR~LfSav--------------------FsDyhLF~ 410 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVS------------AEQLEDYRKLFSAV--------------------FSDYHLFD 410 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCC------------CCCHHHHHHHHHHH--------------------hhhHhhhH
Confidence 99999999999999999999986431 1122221 11110 00000000
Q ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc----ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCC
Q 008771 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD----DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290 (554)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~----~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~L 290 (554)
.++ ..+....++.+..+|+.+.+.+. +.+-.+-.||.|||+|+++.-||+-+-||++|||=-+.-
T Consensus 411 ~ll-----------~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQ 479 (546)
T COG4615 411 QLL-----------GPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQ 479 (546)
T ss_pred hhh-----------CCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccC
Confidence 000 00111234556666666655321 112234589999999999999999999999999999999
Q ss_pred CHHHHHHHHHH----HccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccC
Q 008771 291 DLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339 (554)
Q Consensus 291 D~~~~~~l~~~----l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G 339 (554)
||.-++++... |++.|+||+.||||-.... .|||++.+++|++....|
T Consensus 480 DPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 480 DPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG 531 (546)
T ss_pred ChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence 99999998764 5789999999999966554 699999999999876655
No 392
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=2.2e-27 Score=242.27 Aligned_cols=130 Identities=31% Similarity=0.494 Sum_probs=116.5
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~ 493 (554)
.+.++++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+..|++|+|.++|.++ .++++
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4579999999999988899999999999999999999999999999999999999999999999877 25899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc-c--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE-D--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|+. .|+|.+||.|||+++.. . .. ...+.++|+.+++. +..+|+|++|||||||||||
T Consensus 83 FQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 83 FQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred ecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHH
Confidence 9985 69999999999998865 1 11 23688999999996 47899999999999999986
No 393
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=5.7e-27 Score=238.00 Aligned_cols=128 Identities=34% Similarity=0.474 Sum_probs=113.8
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|..||+++|+|||||||||||++|+|+++|++|+|.++|.++ .+++++|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 48999999999875489999999999999999999999999999999999999999999999877 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+. .|+|.+||++|++.+..- .....+++..+.+++. ..++|+|..|||||||||+|
T Consensus 83 ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAl 144 (338)
T COG3839 83 NY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVAL 144 (338)
T ss_pred Cc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHH
Confidence 85 689999999999987542 2245688899999995 57999999999999999985
No 394
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.7e-27 Score=227.11 Aligned_cols=131 Identities=34% Similarity=0.540 Sum_probs=113.5
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-------eeEEEEec
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------VLPNYFEQ 495 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~-------~~~~y~~Q 495 (554)
+.|+++|+++.|+..++++++||+|++||+++|+||||+|||||+|+|+|+++|.+|+|.+.|.+ .++||++|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 46899999999986579999999999999999999999999999999999999999999988754 36899999
Q ss_pred ccccCCCCCCCHHHHHHhhccc----------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
...-...+..||.|-+..+... ...+.+.+.|+++|+. +..++++..|||||+|||.|
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~l 150 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLL 150 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHH
Confidence 7655566788999998765321 1136789999999995 68899999999999999864
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=1.7e-26 Score=222.94 Aligned_cols=168 Identities=23% Similarity=0.351 Sum_probs=124.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHH----CCCCCCceeEEE-------cCCCceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA----GQEEPDSGNVIK-------AKSNMKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~----G~~~p~~G~I~~-------~~~~~~i~~v 166 (554)
|+++|+. +| .+..++++.+| +++|+|+||||||||+++|. |..+|++|.+.. ......|+++
T Consensus 4 l~l~nfr-~~-----~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 76 (204)
T cd03240 4 LSIRNIR-SF-----HERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLA 76 (204)
T ss_pred EEEECcc-cc-----cCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEE
Confidence 5666764 33 12234566677 99999999999999999995 999998886541 1123479999
Q ss_pred ecccc-----cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 167 SQEFE-----VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 167 ~Q~~~-----~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
+|++. .....|+.+++.... +..+.+
T Consensus 77 f~~~~~~~~~v~r~~~~~~~~~~~~-------------------------------------------------~~~~~~ 107 (204)
T cd03240 77 FENANGKKYTITRSLAILENVIFCH-------------------------------------------------QGESNW 107 (204)
T ss_pred EEeCCCCEEEEEEEhhHhhceeeec-------------------------------------------------hHHHHH
Confidence 99872 222336666553210 001111
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHH------HHHHHHHccCCCeEeecCCCCCCCHHHHH-HHHHHHcc---C-CCeEE
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMR------MSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGK---Q-DVPMV 310 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqR------v~LAraL~~~p~lLlLDEPt~~LD~~~~~-~l~~~l~~---~-g~tvI 310 (554)
.+ ++++.+||+||+|| ++||+|++.+|+++||||||++||+..+. ++.+++++ . +.|+|
T Consensus 108 ~~----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~ii 177 (204)
T cd03240 108 PL----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLI 177 (204)
T ss_pred HH----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEE
Confidence 11 56678999999996 78999999999999999999999999999 88887743 2 78999
Q ss_pred EEecCHHHHHhhcceEEEeeCC
Q 008771 311 IISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g 332 (554)
+|||+++++. .||+|++|++.
T Consensus 178 iitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 178 VITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred EEEecHHHHh-hCCEEEEEeeC
Confidence 9999999885 69999999643
No 396
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.94 E-value=2.9e-25 Score=224.48 Aligned_cols=354 Identities=22% Similarity=0.347 Sum_probs=199.6
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-ceEEEEecc-cccccCccHHHHHHHhhHHHHHHHHHHHH
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-~~i~~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (554)
++|++.|+||.||.||||-+++++|-++|.-|.-...-.. ..++|.--. ..-++..-+.+++-......+ ...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQy-----vd~ 172 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY-----VDQ 172 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHH-----HHH
Confidence 4799999999999999999999999999987753211000 011211100 000011111111111100000 000
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC
Q 008771 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p 278 (554)
+...... ..+..++..+ + .....+++..+.|. ...+|.+..|||||-||.+||.+.++++
T Consensus 173 ipr~~k~------~v~~~l~~~~---------~----r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~a 232 (592)
T KOG0063|consen 173 IPRAVKG------TVGSLLDRKD---------E----RDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKA 232 (592)
T ss_pred HHHHHHH------HHHHHHHHHh---------h----cccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhc
Confidence 0000000 0011111000 0 11233344444443 3457888999999999999999999999
Q ss_pred CeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcceEEEeeC--CeeeeccCChhHHHHHHHHHHH
Q 008771 279 DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEM--GVSRTYEGNYSQYVLEKAAWIE 353 (554)
Q Consensus 279 ~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~~d~i~~l~~--g~~~~~~G~~~~~~~~~~~~~~ 353 (554)
|+.++|||.+.||+..+......+ -.-..-||+|.||++.++.+.|-|..+.. |..-+-.-+|+-
T Consensus 233 dvyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT~Pfsv---------- 302 (592)
T KOG0063|consen 233 DVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSV---------- 302 (592)
T ss_pred ceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecCCccceEEEeccch----------
Confidence 999999999999998765444333 34567899999999999999999988853 211000111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEe
Q 008771 354 SQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433 (554)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 433 (554)
++.++-+-.+-.. .++. -+......+.+...... +=+-..+.
T Consensus 303 ----------------r~giniFl~g~ip--------------ten~---rfR~~~l~f~~~~~~~~-----ek~~~~y~ 344 (592)
T KOG0063|consen 303 ----------------REGINIFLDGLIP--------------TENL---RFRPECLVFLASDLSSE-----DRRTGRYS 344 (592)
T ss_pred ----------------hhhhhhhhhccCC--------------cccc---cccchhheeeeccccch-----hhhhheec
Confidence 0000000000000 0000 00011112222211110 00111244
Q ss_pred cCC-ccceeceEEEEecCC-----EEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCceeeEEEEecccccCCCCCCC
Q 008771 434 YED-RLLFNRANLTIERGE-----KTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQAEALDLDKT 506 (554)
Q Consensus 434 y~~-~~~l~~vs~~i~~Ge-----~iaIvG~NGsGKSTLlk~L~G~~~p~~G-~i~~~~~~~~~~y~~Q~~~~~l~~~~t 506 (554)
|++ +..+-++.|.|..|| ++..+|.||.|||||+++++|.++|+.| +| +.+.+.|-+|-.. --...|
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~----p~lnVSykpqkis--pK~~~t 418 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI----PVLNVSYKPQKIS--PKREGT 418 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc----cccceeccccccC--ccccch
Confidence 554 335667888888885 7899999999999999999999999876 34 2235678888632 235568
Q ss_pred HHHHHHhhcccC--CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 507 VLETVAEAAEDW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 507 v~e~l~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++-+...-++. ...-+-...+.+.+ ....++.+..|||||+|||+|
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~i-e~i~dqevq~lSggelQRval 467 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQI-ENIIDQEVQGLSGGELQRVAL 467 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhH-HHHHhHHhhcCCchhhHHHHH
Confidence 888775432211 12233445555555 346789999999999999985
No 397
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.9e-27 Score=230.82 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=131.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
|+++|+. +|++..++++++| ++++|+||||||||||+++|.-..-.+...+ ...++++++|+..+++..|
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~----~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM----RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh----hhhhHHHHhcCCCCCCCCc
Confidence 7888986 8999999999998 8999999999999999999982211110000 1135788888877766667
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH--HHHHHhhhcCCCccccCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA--KVSKLMPELGFTADDGDR 255 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~lgl~~~~~~~ 255 (554)
+.++.... ... ...+.+ . ...+....... ...++++.++++ +..++
T Consensus 76 ~~~~~~~~-~~~------------------~~~~~l----------~--~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~ 123 (212)
T cd03274 76 SCSVEVHF-QEI------------------IDKPLL----------K--SKGIDLDHNRFLILQGEVEQIAQMP-KKSWK 123 (212)
T ss_pred eEEEEEEE-EeC------------------CCHHHH----------H--HCCcCCCCCceEEcCCcEEEeeccc-ccccc
Confidence 66543211 000 000000 0 00000000000 124455667775 44577
Q ss_pred CCCCCChhHHHHHHHHHHHcc----CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 256 LVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
++..||+|||||++||+|++. +|+++||||||++||+.++.++.+.+++ .+.|+|++||+. ++.++||+|++|
T Consensus 124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~ 202 (212)
T cd03274 124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGI 202 (212)
T ss_pred chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEE
Confidence 789999999999999999974 5899999999999999999999998864 367999999996 455789999998
Q ss_pred e
Q 008771 330 E 330 (554)
Q Consensus 330 ~ 330 (554)
.
T Consensus 203 ~ 203 (212)
T cd03274 203 Y 203 (212)
T ss_pred E
Confidence 5
No 398
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=3e-27 Score=213.12 Aligned_cols=196 Identities=30% Similarity=0.360 Sum_probs=154.4
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+++++||+.. +-|-.+|.++..||++-+|||||||||||+-.++|++ |-+|+|.++|.+. .-+|+
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 4678888753 2467789999999999999999999999999999998 5799999998753 24688
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
.|+..-.+.+.|+.++.... +.......+..+...+
T Consensus 78 sQqq~p~f~mpV~~YL~L~q--------------------------------------------P~~~~a~~i~~i~~~L 113 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQ--------------------------------------------PDKTRTELLNDVAGAL 113 (248)
T ss_pred hhccCCcchhhhhhhhhhcC--------------------------------------------chHHHHHHHHHHHhhh
Confidence 88776667777777654211 1112233456667778
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHcc-----CC--CeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQ-----DP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~-----~p--~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~ 316 (554)
+++ +.+.|.++.|||||-|||-||...+. || ++||||||-|+||+.....|...| ...|.+|||.+||+
T Consensus 114 ~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL 192 (248)
T COG4138 114 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192 (248)
T ss_pred ccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch
Confidence 885 56789999999999999999988765 33 699999999999998776665554 56799999999999
Q ss_pred HHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 317 AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
+--.+.||+++.+..|++ ...|...+
T Consensus 193 NhTLrhA~~~wLL~rG~l-~~~G~~~e 218 (248)
T COG4138 193 NHTLRHAHRAWLLKRGKL-LASGRREE 218 (248)
T ss_pred hhHHHHHHHHHHHhcCeE-Eeecchhh
Confidence 998899999999999987 34554433
No 399
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=1.8e-26 Score=225.95 Aligned_cols=128 Identities=36% Similarity=0.562 Sum_probs=111.6
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
.++++|++|.|+++.+++++||+|.+||+++|+||||||||||||+|+|+++|.+|+|.++|+++ ..+|+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999876 36899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc-------cCCHH---HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE-------DWRID---DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-------~~~~~---~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|.+ ...+..||+|-+..+.. .++.+ .+...|+.+++. +..+|++.+|||||||||.|
T Consensus 82 pQ~~--~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~i 149 (258)
T COG1120 82 PQSP--SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLI 149 (258)
T ss_pred ccCC--CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHH
Confidence 9986 45677899999876532 12332 477789999994 57899999999999999864
No 400
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=2.3e-26 Score=219.42 Aligned_cols=127 Identities=31% Similarity=0.478 Sum_probs=114.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEEe
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFE 494 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~~ 494 (554)
++++|+++.|+++.+++++||+|..||+++++||+||||||+||+|.++.+|++|+|+++|.++ ++||+-
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 7899999999999999999999999999999999999999999999999999999999999877 368999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--cCCH----HHHHHHHhhCCCCh-hhhccccCcCChhhhhccc
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--DWRI----DDIKGLLGRCNFKA-DMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~~----~~~~~~L~~~~l~~-~~~~~~~~~LSGGek~Rl~ 553 (554)
|. ..|+|.+||.||++.... .|.. ..+.++|..+|+++ +..+|.|++|||||+|||.
T Consensus 82 Qq--igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 82 QQ--IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG 145 (309)
T ss_pred hh--cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH
Confidence 87 479999999999986532 4443 46788999999986 5888999999999999984
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=6.8e-25 Score=248.58 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=152.1
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC---CceeEEEcCCC-------ceEEEEecccccccCccHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP---DSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVRE 180 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p---~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~tv~e 180 (554)
.+|+|+|.-+++|+.+.++|+.|||||||++.++|...- ..|+|.++|.+ ..++|.+|+...++.+||+|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 699999999999999999999999999999999998753 35689998864 35899999988889999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc----ccCCC
Q 008771 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD----DGDRL 256 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~----~~~~~ 256 (554)
-+-.+.+-. ... ..+++..+ .+...+..+.+++.+||++- ..|..
T Consensus 209 TldFa~rck---------------~~~----------~r~~~~~R------~e~~~~~~d~~lkilGL~~~~dT~VGnd~ 257 (1391)
T KOG0065|consen 209 TLDFAARCK---------------GPG----------SRYDEVSR------REKLAAMTDYLLKILGLDHCADTLVGNDM 257 (1391)
T ss_pred hhhHHHhcc---------------CCc----------cccccccH------HHHHHHHHHHHHHHhCchhhccceecccc
Confidence 764332100 000 00000000 00111245677888888642 34556
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH-HHHHhhcceEEEeeC
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTKIVETEM 331 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~-~~l~~~~d~i~~l~~ 331 (554)
++-.|||||+||.+|-+++.+|.++.+||+|+|||..+.-.+.+.|++ .+.|++++=|.. ..+-++-|.|++|.+
T Consensus 258 ~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e 337 (1391)
T KOG0065|consen 258 VRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE 337 (1391)
T ss_pred cccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec
Confidence 678999999999999999999999999999999999887777776653 466777665554 556678899999999
Q ss_pred CeeeeccCChhHHHH
Q 008771 332 GVSRTYEGNYSQYVL 346 (554)
Q Consensus 332 g~~~~~~G~~~~~~~ 346 (554)
|.. +|.|++++.+.
T Consensus 338 G~~-iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 338 GYQ-IYQGPRDEVLP 351 (1391)
T ss_pred cce-EEeccHHHHHH
Confidence 986 67777765443
No 402
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=9.1e-26 Score=216.92 Aligned_cols=128 Identities=38% Similarity=0.488 Sum_probs=108.2
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
++++|+++.|.. ..+++++||+|++||+++|+||+||||||||++|.|+.+|++|.|.++|.++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 678999998863 3689999999999999999999999999999999999999999999998665
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhc----cc--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAA----ED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~----~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+||++|+. .|.++.||.|||..+. .. .....+..++..+|+.....+++|++|||||||||||
T Consensus 82 ~~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHH
Confidence 368999985 5779999999998432 11 1244678889999996554458999999999999985
No 403
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=1e-25 Score=213.94 Aligned_cols=131 Identities=30% Similarity=0.423 Sum_probs=116.3
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
.++|++++++++|+++.+++++||+|++||+++|+|++|||||||||+|.|+++|++|+|++.|.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999999999999999999999876
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc---cCCHH----HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE---DWRID----DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+.|+++|+ ..|+.+.||+||++.... ..... -+..-|+.+|++++..+..|++||||++.|++|
T Consensus 86 r~GvlFQ~--gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 86 RMGVLFQQ--GALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred heeEEeec--cccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 26899997 479999999999986532 23333 345569999999988999999999999999975
No 404
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1.9e-25 Score=206.98 Aligned_cols=206 Identities=22% Similarity=0.335 Sum_probs=155.0
Q ss_pred ccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC----CceeEEEcCCC-------
Q 008771 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~~~~------- 160 (554)
+.+.+.|++..+. -..+++++|+++.+||+-||||++|||||-..|+|+|..+- +.-..++++.+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4578889988883 35799999999999999999999999999999999998763 22233333221
Q ss_pred -------ceEEEEecccccc--cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 161 -------MKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 161 -------~~i~~v~Q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
..|+++||+|.-. ++.+|...+... ...+.+-++....|.
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~---------------------IP~wTfkgrWWq~F~---------- 130 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN---------------------IPAWTYKGRWWQRFG---------- 130 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhh---------------------CccccccchHhhhhc----------
Confidence 2488999998533 333443322111 111111122211111
Q ss_pred cccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cC
Q 008771 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~ 305 (554)
.-..++.++|..+|+.+ +....+|.+|--||-|+|+||.|++.+|++||.|||||++|+.+...+..+|. ..
T Consensus 131 --WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~ 208 (330)
T COG4170 131 --WRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNS 208 (330)
T ss_pred --hhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccC
Confidence 12467888999999974 34567899999999999999999999999999999999999999888888763 46
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
+.||+++|||+..+.++||+|-+|.=|..
T Consensus 209 ~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 209 NTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred CceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 89999999999999999999999976653
No 405
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=1e-25 Score=206.41 Aligned_cols=128 Identities=31% Similarity=0.421 Sum_probs=111.6
Q ss_pred eEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------e
Q 008771 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------L 489 (554)
Q Consensus 424 ~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~ 489 (554)
.|+++||++.|+. +.+|+++||+|.+||.+-|+||+|+|||||+|+|++.++|++|.|+++|+++ .
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 3789999999964 5599999999999999999999999999999999999999999999999877 3
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|+++|+. -|.++.||+||++.+.. .. -...+.+.|.++|+. +..+.-|..|||||||||+|
T Consensus 81 IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaI 148 (223)
T COG2884 81 IGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAI 148 (223)
T ss_pred eeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHH
Confidence 68999985 46689999999987743 11 134678899999996 46889999999999999975
No 406
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.2e-25 Score=210.13 Aligned_cols=129 Identities=32% Similarity=0.401 Sum_probs=111.9
Q ss_pred ceEEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 423 SVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
.+|+++|+++.| +++.++++|||+|.+||+|+|+|++|||||||||+|.|+..|++|+|.++|.++
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 468999999999 667899999999999999999999999999999999999999999999998655
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc--------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+||++|++ .|-++.||++|+..+.. ......+...|.++|+. +.+.++.+.|||||+|||+|
T Consensus 82 ~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHH
Confidence 368999986 58899999999875421 11224577889999994 67899999999999999975
No 407
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.4e-25 Score=215.87 Aligned_cols=130 Identities=37% Similarity=0.535 Sum_probs=113.1
Q ss_pred ceEEEeeeeEecCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eE
Q 008771 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~-~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~ 490 (554)
+.+++++++|.|++. .+++++||+|.+||+++|+|+||||||||+++|+|+++|.+|.|.++|.++ .+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999775 899999999999999999999999999999999999999999999998764 37
Q ss_pred EEEecccccCCCCCCCHHHHHHhhccc--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
||++|+|.+++ +..||.++++.+... .. ...+..+|..+++.. ..+++|..|||||||||+|
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceeeHHh
Confidence 89999997655 778999999877542 22 245788999999964 5899999999999999986
No 408
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=3.2e-24 Score=222.22 Aligned_cols=210 Identities=25% Similarity=0.421 Sum_probs=176.7
Q ss_pred CCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------
Q 008771 94 ISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------- 161 (554)
..+.+++++++..-. +.+.+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.+.
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 467899999998664 35789999999999999999999999999999999999999999999998753
Q ss_pred -eEEEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 162 -KIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 162 -~i~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
.++|||.|. .+.+.+|+.||+....... + .+ . ....++...+..
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~-------------------~-~~-----------~-~~g~l~~~~i~~ 381 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK-------------------K-PF-----------S-RGGFLDRRAIRK 381 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccc-------------------c-cc-----------c-cccccCHHHHHH
Confidence 599999986 4567889999985321100 0 00 0 001234556777
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEec
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISH 314 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisH 314 (554)
.+.++++++++.......++..||||.+||+-+||-|..+|++||+.+||-|||..+.+.+.+.| ++.|++|++||-
T Consensus 382 ~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~ 461 (501)
T COG3845 382 FARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISE 461 (501)
T ss_pred HHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEeh
Confidence 88899999998766667788999999999999999999999999999999999999999888765 457999999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|++++..+||||.+|.+|++.
T Consensus 462 dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 462 DLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hHHHHHHhhheeeeeeCCcee
Confidence 999999999999999999874
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=7.4e-24 Score=242.19 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC---CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi 311 (554)
+..++|..+||....+++++.+|||||+||+.||++|+.+| +++||||||++||+..+..|.+.|+ +.|.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34678999999754578899999999999999999999999 9999999999999999999888764 35899999
Q ss_pred EecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
||||++++. .||+|++| ++|++ ++.|..+++..
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~I-v~~Gt~~el~~ 927 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEI-VATGTPEEVAK 927 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEE-EEeCCHHHHHh
Confidence 999999995 69999999 56765 57788776654
No 410
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.7e-25 Score=216.47 Aligned_cols=128 Identities=31% Similarity=0.408 Sum_probs=111.6
Q ss_pred eEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.|+++++++.|.. ..++++|||+|++||++||+|.+|+|||||+|+|.++.+|++|+|.++|.++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 3789999999975 3689999999999999999999999999999999999999999999999766
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|+++|+. .|.-.+||++|++++.. .+ ....+.++|+.+|+. |..++.|.+|||||||||+|
T Consensus 81 ~R~~IGMIFQhF--nLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccc--cccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHH
Confidence 368999986 36678999999987643 11 235688899999996 78899999999999999975
No 411
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=8e-25 Score=217.82 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=67.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHccC----CCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceE
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQD----PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i 326 (554)
++++.+||||||||++||++++.+ |+++||||||++||+....++.+.+++ .|.++|+||||.+++ .+||+|
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i 228 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADAL 228 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeE
Confidence 455689999999999999999864 899999999999999999998887754 378999999998877 579999
Q ss_pred EEeeC
Q 008771 327 VETEM 331 (554)
Q Consensus 327 ~~l~~ 331 (554)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 99853
No 412
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.9e-25 Score=216.52 Aligned_cols=127 Identities=30% Similarity=0.428 Sum_probs=111.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---ee--------eEEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV--------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~---~~--------~~~y~ 493 (554)
|+++++++.|+...+++++||+|+.||.+|+.|||||||||||++|+|++.|++|.|.++|. +. ++||+
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 67889999999888999999999999999999999999999999999999999999999987 33 47999
Q ss_pred ecccccCCCCCCCHHHHHHhhccc--------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~--------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|+. .+++.+||.|||+.+.+. .....+.++|..+.+. ...+++|.+|||||||||||
T Consensus 83 FQ~Y--ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVAL 148 (345)
T COG1118 83 FQHY--ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVAL 148 (345)
T ss_pred Eech--hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHH
Confidence 9986 488999999999987531 1224677889999995 47889999999999999985
No 413
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=220.38 Aligned_cols=208 Identities=20% Similarity=0.336 Sum_probs=154.9
Q ss_pred CCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--ceEEEEecc
Q 008771 94 ISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--MKIAFLSQE 169 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--~~i~~v~Q~ 169 (554)
....|++++|++.-++ ..+++|+||+|+.|+.+.|.||||||||+|+|+|+|+-+..+|++....+. ..+-||||.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 3467999999998865 357888999999999999999999999999999999999999999865443 569999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc-CC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GF 248 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gl 248 (554)
|.. ...|.+|.+..+...... ......|.++ .+.++. .+...+++.. |+
T Consensus 510 PYm-t~GTLRdQvIYP~~~~~~-----------~~~~~~d~~i-~r~Le~-----------------v~L~hl~~r~ggl 559 (659)
T KOG0060|consen 510 PYM-TLGTLRDQVIYPLKAEDM-----------DSKSASDEDI-LRILEN-----------------VQLGHLLEREGGL 559 (659)
T ss_pred CCc-cccchhheeeccCccccc-----------cccCCCHHHH-HHHHHH-----------------hhhhhHHHHhCCC
Confidence 976 445999987654321100 0011111111 111110 0111222222 22
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEE
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
+......-...||+||+||+++||.+.++|++-||||.||++|.+....+.+.+++.|.|.|-|+|+..+.. +-|.++.
T Consensus 560 d~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fHd~~L~ 638 (659)
T KOG0060|consen 560 DQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FHDYVLR 638 (659)
T ss_pred CchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hhhEEEE
Confidence 211111123589999999999999999999999999999999999999999999999999999999998885 6899998
Q ss_pred eeCC
Q 008771 329 TEMG 332 (554)
Q Consensus 329 l~~g 332 (554)
|+.+
T Consensus 639 ~~g~ 642 (659)
T KOG0060|consen 639 MDGR 642 (659)
T ss_pred ecCC
Confidence 8764
No 414
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=215.14 Aligned_cols=131 Identities=29% Similarity=0.422 Sum_probs=112.4
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEec
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q 495 (554)
..+.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.++ .++|++|
T Consensus 9 ~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 9 QGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 35679999999999887899999999999999999999999999999999999999999999987654 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+...........+..++..+++. +..++++..|||||||||+|
T Consensus 89 ~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~l 144 (257)
T PRK11247 89 DA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVAL 144 (257)
T ss_pred Cc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 85 3666789999997643222245678899999995 46789999999999999875
No 415
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.91 E-value=3.5e-24 Score=223.18 Aligned_cols=128 Identities=25% Similarity=0.410 Sum_probs=112.8
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 58999999999887899999999999999999999999999999999999999999999998765 2689999
Q ss_pred ccccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+..+... .....+.++++.+++. +.+++++..|||||||||+|
T Consensus 84 ~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 84 SY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVAL 145 (353)
T ss_pred Cc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHH
Confidence 85 588899999999876431 1234688899999995 47899999999999999975
No 416
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.1e-24 Score=223.24 Aligned_cols=130 Identities=29% Similarity=0.482 Sum_probs=113.6
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~ 493 (554)
...|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4579999999999887899999999999999999999999999999999999999999999998654 36899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++.+||.||+..... .. ....+..+++.+++. +..++++..|||||||||+|
T Consensus 84 fQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaL 147 (351)
T PRK11432 84 FQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVAL 147 (351)
T ss_pred eCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 9985 58889999999987542 11 134678899999995 46789999999999999975
No 417
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.9e-24 Score=224.05 Aligned_cols=128 Identities=28% Similarity=0.421 Sum_probs=112.1
Q ss_pred eEEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEe
Q 008771 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFE 494 (554)
Q Consensus 424 ~l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~ 494 (554)
.|+++|+++.| ++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 48899999999 677899999999999999999999999999999999999999999999998755 378999
Q ss_pred cccccCCCCCCCHHHHHHhhccc--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ .+++.+||.||+.++... .. ...+..+|+.+++. +.++++|..|||||||||+|
T Consensus 83 Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRval 145 (356)
T PRK11650 83 QNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAM 145 (356)
T ss_pred CCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHH
Confidence 986 588899999999876431 11 24578899999995 57899999999999999975
No 418
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.91 E-value=3.8e-24 Score=208.64 Aligned_cols=127 Identities=26% Similarity=0.405 Sum_probs=107.6
Q ss_pred EEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------e
Q 008771 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------L 489 (554)
Q Consensus 425 l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~ 489 (554)
++++|+++.|++ +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964 4699999999999999999999999999999999999999999999998654 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc--c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++ .+++..||.||+..... . .....+..+++.+++. +..++++..|||||||||+|
T Consensus 82 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 82 IGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred ceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 57999985 46677899999875421 1 1234678899999995 46789999999999999875
No 419
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.2e-24 Score=210.42 Aligned_cols=127 Identities=33% Similarity=0.449 Sum_probs=107.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPN 491 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~~ 491 (554)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 4689999999887899999999999999999999999999999999999999999999988543 257
Q ss_pred EEecccccCCCCCCCHHHHHHhhcc---cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+++..||.+|+..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 81 MLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVAL 147 (235)
T ss_pred EEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 999985 46677899999875421 111 23567889999995 45789999999999999875
No 420
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.91 E-value=7.4e-24 Score=221.95 Aligned_cols=131 Identities=28% Similarity=0.467 Sum_probs=114.2
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEE
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNY 492 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y 492 (554)
..+.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35679999999999887899999999999999999999999999999999999999999999998765 2689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.||+..+.. ... ...+..+++.+++. +..+++|..|||||||||+|
T Consensus 91 vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaL 155 (375)
T PRK09452 91 VFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAI 155 (375)
T ss_pred EecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 99985 58899999999987542 111 23577889999995 57899999999999999985
No 421
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.4e-24 Score=208.48 Aligned_cols=127 Identities=34% Similarity=0.497 Sum_probs=107.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 4689999999887899999999999999999999999999999999999999999999988654 36799998
Q ss_pred cccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.+|+..... .. ....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~l 141 (213)
T cd03259 81 Y--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVAL 141 (213)
T ss_pred h--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHH
Confidence 6 36677899999875422 11 123577899999996 46789999999999999875
No 422
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.7e-24 Score=207.99 Aligned_cols=127 Identities=29% Similarity=0.389 Sum_probs=108.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 4789999999888899999999999999999999999999999999999999999999988543 3679999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+++..... .. ....+..+++.+++. +..++++..|||||||||+|
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~l 142 (220)
T cd03265 81 DL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEI 142 (220)
T ss_pred Cc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHH
Confidence 86 36677899999865321 11 123578899999995 56789999999999999875
No 423
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=3.3e-24 Score=207.43 Aligned_cols=127 Identities=28% Similarity=0.429 Sum_probs=107.3
Q ss_pred EEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEEEEeccc
Q 008771 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQ 497 (554)
Q Consensus 426 ~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~y~~Q~~ 497 (554)
+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36799999987 7899999999999999999999999999999999999999999999998764 368999986
Q ss_pred ccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 498 AEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
...+ +..||.||+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 137 (205)
T cd03226 81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAI 137 (205)
T ss_pred hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHH
Confidence 3223 45799999976432 12235688999999996 46789999999999999875
No 424
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.2e-23 Score=200.27 Aligned_cols=162 Identities=18% Similarity=0.132 Sum_probs=115.3
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc-----ee----EEEcC-CCceEEEEecccccccCccHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GN----VIKAK-SNMKIAFLSQEFEVSMSRTVREE 181 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-----G~----I~~~~-~~~~i~~v~Q~~~~~~~~tv~e~ 181 (554)
.++++++++.+| +++|+|+||||||||+.+|.-...... |. +...+ ....|.+.+|+..++.+
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~------ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN------ 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC------
Confidence 346678888887 889999999999999999984332221 21 01111 12357777777554331
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCC
Q 008771 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (554)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LS 261 (554)
- .. ......+.++++. ....++++.+||
T Consensus 84 ~--~~----------------------------------------------~~~~~~~~~~l~~----~~~~~~~~~~lS 111 (198)
T cd03276 84 P--LC----------------------------------------------VLSQDMARSFLTS----NKAAVRDVKTLS 111 (198)
T ss_pred c--CC----------------------------------------------HHHHHHHHHHhcc----ccccCCcccccC
Confidence 0 00 0001223344444 244578899999
Q ss_pred hhHHHHHHHHHHH----ccCCCeEeecCCCCCCCHHHHHHHHHHHcc------CCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 262 SGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 262 GGqrqRv~LAraL----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
+|||||++||+|+ +.+|+++||||||++||+..+..+.++|.+ .+.|||++||+++.+..+ |+|.+|..
T Consensus 112 ~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~ 190 (198)
T cd03276 112 GGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRM 190 (198)
T ss_pred hhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEe
Confidence 9999999999999 689999999999999999998888877643 135899999999999875 99999987
Q ss_pred Ce
Q 008771 332 GV 333 (554)
Q Consensus 332 g~ 333 (554)
++
T Consensus 191 ~~ 192 (198)
T cd03276 191 KD 192 (198)
T ss_pred cC
Confidence 54
No 425
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.90 E-value=8.6e-24 Score=204.93 Aligned_cols=127 Identities=27% Similarity=0.381 Sum_probs=109.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
|+++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4689999999877899999999999999999999999999999999999999999999998755 36799998
Q ss_pred cccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.||+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 81 ~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 137 (208)
T cd03268 81 P--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGI 137 (208)
T ss_pred C--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHH
Confidence 5 36678899999865432 22345688899999995 46789999999999999875
No 426
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.90 E-value=8e-24 Score=218.74 Aligned_cols=134 Identities=22% Similarity=0.365 Sum_probs=114.0
Q ss_pred CCceEEEeeeeEecCC-------------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 421 GRSVVTIKNLEFGYED-------------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~-------------~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
.+++|+++|+++.|+. ..+++++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 4578999999999962 358999999999999999999999999999999999999999999999876
Q ss_pred e-------------eEEEEecccccCCCCCCCHHHHHHhhcc----cCC----HHHHHHHHhhCCCChhhhccccCcCCh
Q 008771 488 V-------------LPNYFEQNQAEALDLDKTVLETVAEAAE----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSG 546 (554)
Q Consensus 488 ~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG 546 (554)
+ .++|++|++...+++..||.+++.+... ... ...++.+|+.+++..+.++++|..|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 4 2689999976568889999999875321 122 235678899999976678999999999
Q ss_pred hhhhcccC
Q 008771 547 GEKIILLY 554 (554)
Q Consensus 547 Gek~Rl~l 554 (554)
||+|||+|
T Consensus 165 G~~QRv~i 172 (331)
T PRK15079 165 GQCQRIGI 172 (331)
T ss_pred HHHHHHHH
Confidence 99999975
No 427
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=8.2e-24 Score=206.89 Aligned_cols=127 Identities=34% Similarity=0.483 Sum_probs=107.8
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEec
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q 495 (554)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 468999999986 6799999999999999999999999999999999999999999999988654 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+|+..... .. ....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~l 142 (220)
T cd03293 81 QD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVAL 142 (220)
T ss_pred cc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHH
Confidence 86 36677899999875421 11 134678899999995 46789999999999999875
No 428
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=9.7e-24 Score=206.04 Aligned_cols=127 Identities=35% Similarity=0.480 Sum_probs=106.9
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999976 6799999999999999999999999999999999999999999999987543
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.|++..... .. ....+..++..+++. +.+++++..|||||||||+|
T Consensus 81 ~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHH
Confidence 267999985 36677899999876422 11 124578899999996 45789999999999999975
No 429
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.3e-23 Score=210.01 Aligned_cols=127 Identities=28% Similarity=0.404 Sum_probs=108.6
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEeccccc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAE 499 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~~~ 499 (554)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|++
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~-- 79 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE-- 79 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC--
Confidence 7899999999877899999999999999999999999999999999999999999999988654 368999985
Q ss_pred CCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 500 ALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 500 ~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~l 139 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGI 139 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHH
Confidence 46677899999875321 111 24578899999995 46789999999999999875
No 430
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=8.4e-23 Score=233.17 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=88.8
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc---CCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ---DPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi 311 (554)
+..++|..+||.....++++.+|||||+||+.||++|+. +|+++||||||++||+..+..|.+.|+ +.|.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345788899997545788999999999999999999997 599999999999999999998888764 35899999
Q ss_pred EecCHHHHHhhcceEEEe------eCCeeeeccCChhH
Q 008771 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQ 343 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~ 343 (554)
||||++++. .||+|++| ++|++ ++.|..++
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~i-v~~G~~~~ 922 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTI-VASGTPEE 922 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEE-EEeCCHHH
Confidence 999999995 69999999 57776 46676543
No 431
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.90 E-value=6.1e-24 Score=206.75 Aligned_cols=128 Identities=29% Similarity=0.465 Sum_probs=106.4
Q ss_pred EEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEecccccC
Q 008771 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAEA 500 (554)
Q Consensus 426 ~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~~~~ 500 (554)
+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++...
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 367899999877799999999999999999999999999999999999999999999998643 378999986422
Q ss_pred CCCCCCHHHHHHhhccc----------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 501 LDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 501 l~~~~tv~e~l~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
..+..||.||+...... .....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 143 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLL 143 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHH
Confidence 22457999998764321 1124578899999995 56889999999999999875
No 432
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9e-24 Score=205.10 Aligned_cols=127 Identities=23% Similarity=0.455 Sum_probs=108.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------eEEEEecccc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQA 498 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------~~~y~~Q~~~ 498 (554)
++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~- 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER- 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC-
Confidence 4689999999887899999999999999999999999999999999999999999999998654 368999986
Q ss_pred cCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 499 EALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 499 ~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+++..||.||+..... .. ....+.+++..+++. +..++++..|||||||||+|
T Consensus 80 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 139 (210)
T cd03269 80 -GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQF 139 (210)
T ss_pred -cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHH
Confidence 46677899999865421 11 124577899999996 46789999999999999874
No 433
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.5e-23 Score=206.94 Aligned_cols=129 Identities=29% Similarity=0.391 Sum_probs=108.7
Q ss_pred ceEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
++++++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 57999999999964 4699999999999999999999999999999999999999999999998543
Q ss_pred ----eEEEEecccccCCCCCCCHHHHHHhhcc--c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+..... . .....+..++..+++. +..++++..|||||||||+|
T Consensus 84 ~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 84 LRNQKLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHhccEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 268999985 46677899999875321 1 1123578899999995 46789999999999999875
No 434
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-23 Score=219.23 Aligned_cols=131 Identities=29% Similarity=0.486 Sum_probs=114.2
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEE
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNY 492 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y 492 (554)
..++|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 36689999999999887799999999999999999999999999999999999999999999998765 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.||+..+.. ... ...+.++++.+++. +..+++|..|||||||||+|
T Consensus 96 vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaL 160 (377)
T PRK11607 96 MFQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVAL 160 (377)
T ss_pred EeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 99986 48899999999987542 111 23577899999995 46899999999999999985
No 435
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.90 E-value=1.2e-23 Score=204.73 Aligned_cols=127 Identities=30% Similarity=0.488 Sum_probs=107.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
|+++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 4689999999887899999999999999999999999999999999999999999999988654 36799998
Q ss_pred cccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.+|+..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~l 141 (213)
T cd03301 81 Y--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVAL 141 (213)
T ss_pred h--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHH
Confidence 5 36677899999875421 111 23567889999995 56799999999999999874
No 436
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=1.2e-23 Score=204.78 Aligned_cols=127 Identities=29% Similarity=0.369 Sum_probs=107.6
Q ss_pred EEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 6899999999 456799999999999999999999999999999999999999999999988643 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.+|+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 82 GVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred EEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 7999986 36677899999876421 11234678899999996 46789999999999999875
No 437
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.7e-23 Score=202.27 Aligned_cols=127 Identities=27% Similarity=0.425 Sum_probs=109.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ ..+|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 7899999999887899999999999999999999999999999999999999999999998654 2568888
Q ss_pred ccccCCCCCCCHHHHHHhhccc---CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..|+.|++...... .....+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~l 140 (204)
T PRK13538 82 QP--GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVAL 140 (204)
T ss_pred cc--ccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHH
Confidence 64 466778999998754321 2345688899999995 45789999999999999875
No 438
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=1.6e-23 Score=216.86 Aligned_cols=127 Identities=27% Similarity=0.365 Sum_probs=108.8
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
|+++|+++.|++ ..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999952 3699999999999999999999999999999999999999999999998754
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..... .+. ...+.++|+.+|+. +..+++|..|||||||||+|
T Consensus 82 ~~Ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~I 151 (343)
T TIGR02314 82 RQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAI 151 (343)
T ss_pred cCEEEEECCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 368999985 46678999999986532 122 23567889999995 56899999999999999975
No 439
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=1.9e-23 Score=201.56 Aligned_cols=127 Identities=28% Similarity=0.454 Sum_probs=109.4
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
++++|+++.|+++.+++++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 4689999999888899999999999999999999999999999999999999999999988654 2578898
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+.+..|+.||+...........+..++..+++.. ..++++..||||||||++|
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~l 136 (201)
T cd03231 81 AP--GIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVAL 136 (201)
T ss_pred cc--ccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCchhhCCHHHHHHHHH
Confidence 75 46677899999876543334567888999999963 5689999999999999875
No 440
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.90 E-value=1.7e-23 Score=204.36 Aligned_cols=127 Identities=25% Similarity=0.391 Sum_probs=108.2
Q ss_pred EEEeeeeEecCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEE
Q 008771 425 VTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPN 491 (554)
Q Consensus 425 l~~~~l~~~y~~~----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~ 491 (554)
++++|+++.|++. .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999865 799999999999999999999999999999999999999999999988654 267
Q ss_pred EEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+++..||.||+..... .. ....+..+++.+++. +.+++++..|||||||||+|
T Consensus 82 ~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 147 (218)
T cd03266 82 FVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAI 147 (218)
T ss_pred EecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHH
Confidence 999986 46677899999865321 11 124578899999995 56889999999999999875
No 441
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.90 E-value=2.1e-23 Score=210.25 Aligned_cols=130 Identities=31% Similarity=0.423 Sum_probs=109.7
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
..+|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4579999999999887899999999999999999999999999999999999999999999987543
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc---cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+|
T Consensus 85 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 85 RMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred cEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 257999985 46677899999875321 111 23567789999996 46789999999999999875
No 442
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.2e-23 Score=215.22 Aligned_cols=133 Identities=25% Similarity=0.434 Sum_probs=114.0
Q ss_pred CceEEEeeeeEecCC----------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---
Q 008771 422 RSVVTIKNLEFGYED----------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~----------~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--- 488 (554)
+++|+++|+++.|+. ..++++|||+|.+||++||+|+||||||||+++|+|+++|.+|+|.++|.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 568999999999962 3689999999999999999999999999999999999999999999998654
Q ss_pred ----------eEEEEecccccCCCCCCCHHHHHHhhcc---cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhc
Q 008771 489 ----------LPNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKII 551 (554)
Q Consensus 489 ----------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~R 551 (554)
.++|++|++...+++..||.+++.+... .. ....+.++|+.+|+..+.++++|..|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 3689999987678899999999865321 11 124678999999997667899999999999999
Q ss_pred ccC
Q 008771 552 LLY 554 (554)
Q Consensus 552 l~l 554 (554)
|+|
T Consensus 163 v~i 165 (327)
T PRK11308 163 IAI 165 (327)
T ss_pred HHH
Confidence 975
No 443
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=219.99 Aligned_cols=128 Identities=31% Similarity=0.488 Sum_probs=110.9
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 48899999999887899999999999999999999999999999999999999999999988654 2689999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+..... ... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 83 ~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaL 144 (369)
T PRK11000 83 SY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAI 144 (369)
T ss_pred Cc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHH
Confidence 85 47788999999976532 111 24578899999995 56899999999999999975
No 444
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=3.1e-23 Score=202.01 Aligned_cols=132 Identities=22% Similarity=0.336 Sum_probs=111.5
Q ss_pred CCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------EEE
Q 008771 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNY 492 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-------~~y 492 (554)
.++++++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ++|
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 3457899999999998878999999999999999999999999999999999999999999999986542 679
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cC-CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..|+.+|+..... .. ....++.++..+++. +..++++..|||||||||+|
T Consensus 87 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 148 (214)
T PRK13543 87 LGHLP--GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLAL 148 (214)
T ss_pred eecCc--ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHH
Confidence 99875 36667799999865421 11 234567899999996 45789999999999999875
No 445
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.90 E-value=2.6e-23 Score=213.11 Aligned_cols=130 Identities=29% Similarity=0.423 Sum_probs=109.7
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNY 492 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y 492 (554)
+.+|+++|+++.|++..+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 3578999999999887899999999999999999999999999999999999999999999988654 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.+++..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 82 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~l 146 (303)
T TIGR01288 82 VPQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTL 146 (303)
T ss_pred Eeccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHH
Confidence 99985 46678899999864321 122 13466789999995 46789999999999999875
No 446
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.4e-23 Score=199.14 Aligned_cols=130 Identities=29% Similarity=0.461 Sum_probs=110.9
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------EE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-----------~~ 491 (554)
++++++|++..|+...++++|||++.+||+++|+|+||+|||||||+|+|+.+|.+|+|.++|.++. ++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4689999999999988999999999999999999999999999999999999999999999998883 47
Q ss_pred EEecccccCCCCCCCHHHHHHhhccc-----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|-. .+++++||.|||.-+... ....++..+...|---.+..+++...|||||||-|+|
T Consensus 82 ~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 82 YVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI 147 (237)
T ss_pred eCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH
Confidence 999874 588999999999754321 1112266677777755677899999999999998874
No 447
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.9e-23 Score=207.03 Aligned_cols=128 Identities=30% Similarity=0.479 Sum_probs=108.3
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 37899999999888899999999999999999999999999999999999999999999988653 2679999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cC----C----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DW----R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+|+..... .. . ...+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 82 HY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred CC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHH
Confidence 86 36677899999875421 10 1 23567889999995 46789999999999999975
No 448
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.90 E-value=1.8e-23 Score=217.85 Aligned_cols=128 Identities=28% Similarity=0.428 Sum_probs=111.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 37899999999887899999999999999999999999999999999999999999999998765 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcc------cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE------DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~------~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+..... ... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 82 ~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 82 HY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred Cc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 85 57788999999986532 111 24678899999995 56899999999999999975
No 449
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.90 E-value=2.1e-23 Score=204.13 Aligned_cols=128 Identities=31% Similarity=0.460 Sum_probs=107.2
Q ss_pred eEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 4699999999999999999999999999999999999999999999987543
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..... .. ....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 81 RNKKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAI 152 (221)
T ss_pred HHhcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 268999985 46677899999875321 11 123577899999996 46789999999999999875
No 450
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=1.8e-23 Score=206.64 Aligned_cols=127 Identities=30% Similarity=0.425 Sum_probs=107.2
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y~ 493 (554)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 4689999999877799999999999999999999999999999999999999999999988543 26799
Q ss_pred ecccccCCCCCCCHHHHHHhhcccC----------------CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAEDW----------------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~~----------------~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.+++....... ....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 81 FQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred eccc--ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHH
Confidence 9985 3667789999987542110 123577889999996 46789999999999999875
No 451
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.89 E-value=2.8e-23 Score=204.04 Aligned_cols=131 Identities=25% Similarity=0.422 Sum_probs=107.0
Q ss_pred eEEEeeeeEecCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+++++|+++.|++. .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999764 699999999999999999999999999999999999999999999988543
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhcc----cCCH---HH-HHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE----DWRI---DD-IKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~---~~-~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+.+..||.+|+..... .... .. +..++..+++.....++++..|||||||||+|
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI 156 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence 2679999864346678899999864321 1111 12 24788999996556789999999999999875
No 452
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.89 E-value=3.5e-23 Score=212.19 Aligned_cols=130 Identities=31% Similarity=0.443 Sum_probs=111.3
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNY 492 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y 492 (554)
...++++|+++.|++..+++++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 3579999999999988899999999999999999999999999999999999999999999998764 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.||+..... ... ...+..+++.+++. +..++++..|||||||||+|
T Consensus 85 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 149 (306)
T PRK13537 85 VPQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTL 149 (306)
T ss_pred EeccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHH
Confidence 99985 47788999999875322 111 23466889999995 46789999999999999875
No 453
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.89 E-value=3.1e-23 Score=205.08 Aligned_cols=128 Identities=30% Similarity=0.465 Sum_probs=108.6
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEe
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFE 494 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~ 494 (554)
+++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 37899999999888899999999999999999999999999999999999999999999988654 367999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ .+++..|+.+|+..... .. ....+.+++..+++. +.+++++..|||||||||+|
T Consensus 81 q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~l 143 (236)
T TIGR03864 81 QQP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEI 143 (236)
T ss_pred CCC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHH
Confidence 985 35578899999865421 11 124577889999996 46789999999999999875
No 454
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.89 E-value=1.9e-23 Score=207.38 Aligned_cols=127 Identities=31% Similarity=0.406 Sum_probs=107.5
Q ss_pred EEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 68999999997 67799999999999999999999999999999999999999999999988653 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.+|+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 82 GMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAI 156 (243)
T ss_pred EEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHH
Confidence 8999985 36677899999864321 11124577889999995 56789999999999999975
No 455
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.89 E-value=6.3e-23 Score=189.73 Aligned_cols=191 Identities=25% Similarity=0.286 Sum_probs=147.7
Q ss_pred ccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEE
Q 008771 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~ 164 (554)
..|++.++.|+|.. .|++-|+|++++.|.+..+||.||||||||||+|+|-.-.-.|.|.+.|... ...
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~ 91 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLS 91 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCcee
Confidence 45999999999964 5899999999999999999999999999999999998777778888877532 122
Q ss_pred EEecc----------cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 165 FLSQE----------FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 165 ~v~Q~----------~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
|+--+ ..++.+.++..-+. .+..+.
T Consensus 92 YLGgeW~~~~~~agevplq~D~sae~mif---------------------------------------------gV~g~d 126 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAGEVPLQGDISAEHMIF---------------------------------------------GVGGDD 126 (291)
T ss_pred EecccccccccccccccccccccHHHHHh---------------------------------------------hccCCC
Confidence 33211 11111122211110 111122
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
. ++-+++++-+.++ ..-.++.+|-|||+||.|+..|+..=++|||||-|-.||+-++..|.+++++ .|.|||
T Consensus 127 p-~Rre~LI~iLDId---l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIV 202 (291)
T KOG2355|consen 127 P-ERREKLIDILDID---LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIV 202 (291)
T ss_pred h-hHhhhhhhheecc---ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 2 3445556666654 2334678999999999999999999999999999999999999999999863 699999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeee
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
+.||-.+=++.+.+++++|..|++.
T Consensus 203 YATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 203 YATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred EEeeeccchhhcchhEEEecCCeee
Confidence 9999999999999999999999985
No 456
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.89 E-value=3.4e-23 Score=203.66 Aligned_cols=130 Identities=29% Similarity=0.393 Sum_probs=108.9
Q ss_pred CceEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------
Q 008771 422 RSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------- 488 (554)
+++|+++|+++.|++ ..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 357999999999975 2589999999999999999999999999999999999999999999987543
Q ss_pred -----eEEEEecccccCCCCCCCHHHHHHhhc--cc----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA--ED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~--~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..|+.||+.... .. ....++..++..+++. +..++++..|||||||||+|
T Consensus 84 ~~~~~~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~l 157 (228)
T PRK10584 84 KLRAKHVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHhheEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHH
Confidence 367999985 4667789999986532 11 1134678899999995 56789999999999999875
No 457
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=2.9e-23 Score=216.64 Aligned_cols=127 Identities=28% Similarity=0.411 Sum_probs=111.2
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEECCcee--------eEEEEe
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNV--------LPNYFE 494 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~--G~i~~~~~~~--------~~~y~~ 494 (554)
|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++ |+|.++|.++ .++|++
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 789999999988789999999999999999999999999999999999999999 9999998654 368999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ .+++.+||.||+..+.. ... ...+.++++.+++. +..++++..|||||||||+|
T Consensus 86 Q~~--~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 86 QNY--ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAI 148 (362)
T ss_pred CCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHH
Confidence 986 47799999999986542 111 23578899999995 56899999999999999985
No 458
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.3e-23 Score=206.48 Aligned_cols=127 Identities=29% Similarity=0.410 Sum_probs=106.9
Q ss_pred EEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999986 7799999999999999999999999999999999999999999999988543 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.+|+..... ......+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 81 GMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred EEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHH
Confidence 7999985 46677899999864321 11134577889999995 46789999999999999875
No 459
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.89 E-value=3e-23 Score=199.63 Aligned_cols=127 Identities=28% Similarity=0.413 Sum_probs=107.7
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 4689999999888899999999999999999999999999999999999999999999998654 2578888
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+|+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 138 (198)
T TIGR01189 81 LP--GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLAL 138 (198)
T ss_pred Cc--ccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHH
Confidence 64 46677899999875432 11234578899999996 45789999999999999875
No 460
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.4e-23 Score=212.42 Aligned_cols=135 Identities=24% Similarity=0.277 Sum_probs=111.0
Q ss_pred CCCCceEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----
Q 008771 419 RSGRSVVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----- 488 (554)
Q Consensus 419 ~~~~~~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----- 488 (554)
..++++|+++|++|.|++ ..+|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 356788999999999974 2599999999999999999999999999999999999999999999986432
Q ss_pred ---------------------eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhcccc
Q 008771 489 ---------------------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKV 541 (554)
Q Consensus 489 ---------------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~ 541 (554)
.++|++|++...++ ..||.+|+..+.. ... ...+..++..+++..+..++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccc-cchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 25799998744454 4599999975421 111 2356788999999655688999
Q ss_pred CcCChhhhhcccC
Q 008771 542 SLLSGGEKIILLY 554 (554)
Q Consensus 542 ~~LSGGek~Rl~l 554 (554)
..|||||||||+|
T Consensus 175 ~~LSgGqkqRvai 187 (320)
T PRK13631 175 FGLSGGQKRRVAI 187 (320)
T ss_pred ccCCHHHHHHHHH
Confidence 9999999999975
No 461
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.5e-23 Score=211.87 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=107.8
Q ss_pred eEEEeeeeEecCCc-----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~-----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.|+++|+++.|++. .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 37899999999742 589999999999999999999999999999999999999999999975321
Q ss_pred ------------------------eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhc
Q 008771 489 ------------------------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLD 538 (554)
Q Consensus 489 ------------------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~ 538 (554)
.++|++|++...+ +..||.||+..... ... ...+..+++.+|+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 2589999864445 45799999975432 111 2457889999999756789
Q ss_pred cccCcCChhhhhcccC
Q 008771 539 RKVSLLSGGEKIILLY 554 (554)
Q Consensus 539 ~~~~~LSGGek~Rl~l 554 (554)
+++..|||||||||+|
T Consensus 161 ~~~~~LSgGqkqrval 176 (305)
T PRK13651 161 RSPFELSGGQKRRVAL 176 (305)
T ss_pred CChhhCCHHHHHHHHH
Confidence 9999999999999975
No 462
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.89 E-value=2.2e-23 Score=202.68 Aligned_cols=127 Identities=31% Similarity=0.429 Sum_probs=107.4
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNY 492 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~~y 492 (554)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4689999999887899999999999999999999999999999999999999999999998654 2579
Q ss_pred EecccccCCCCCCCHHHHHHhhc---ccCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..|+.||+.... .... ...+..++..+++. ...++++..|||||+|||+|
T Consensus 81 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 81 VFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred Eeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHH
Confidence 99986 3667789999987532 1111 23567889999995 46789999999999999875
No 463
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.4e-23 Score=212.03 Aligned_cols=129 Identities=27% Similarity=0.373 Sum_probs=108.1
Q ss_pred EEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 425 l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
++++|+++.|++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999964 4699999999999999999999999999999999999999999999998654
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...++ ..||.+|+..... ... ...+..+|+.+++..+..++++..|||||||||+|
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 26899998644454 5799999975422 111 23567889999997556789999999999999975
No 464
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.5e-23 Score=208.24 Aligned_cols=132 Identities=30% Similarity=0.404 Sum_probs=111.6
Q ss_pred CCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008771 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~ 489 (554)
..++.|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 7 ~~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 7 HSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 346789999999999877899999999999999999999999999999999999999999999998654 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc----------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++ .+.+..||.+|+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 87 i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 158 (265)
T PRK10575 87 VAYLPQQL--PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWI 158 (265)
T ss_pred eEEeccCC--CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHH
Confidence 67999975 35577899999975321 01124578899999995 56889999999999999875
No 465
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.89 E-value=2.4e-23 Score=203.53 Aligned_cols=127 Identities=28% Similarity=0.383 Sum_probs=107.3
Q ss_pred EEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEE
Q 008771 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~ 493 (554)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 468999999976 6799999999999999999999999999999999999999999999988654 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.+|+..... ... ...+.+++..+++. +..++++..|||||+|||+|
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 144 (220)
T cd03263 81 PQFD--ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSL 144 (220)
T ss_pred cCcC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHH
Confidence 9985 46678899999875421 111 23567889999995 56789999999999999875
No 466
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.89 E-value=4.2e-23 Score=202.66 Aligned_cols=130 Identities=27% Similarity=0.417 Sum_probs=109.2
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
+++|+++|+++.|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4579999999999887899999999999999999999999999999999999999999999998653 357
Q ss_pred EEecccccCCCCCCCHHHHHHhhc---c-cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAA---E-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~---~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++. +++ .||.||+.... . ......+..++..+++.....++++..|||||+|||+|
T Consensus 85 ~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 148 (225)
T PRK10247 85 YCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISL 148 (225)
T ss_pred EEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHH
Confidence 9999853 444 59999986431 1 11234567899999996556789999999999999875
No 467
>PRK10908 cell division protein FtsE; Provisional
Probab=99.89 E-value=3.5e-23 Score=202.76 Aligned_cols=127 Identities=27% Similarity=0.413 Sum_probs=107.1
Q ss_pred EEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 6899999999 566799999999999999999999999999999999999999999999988644 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhc--ccCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAA--EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~--~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..|+.+|+.... .... ...+..+++.+++. +.+++++..|||||||||+|
T Consensus 82 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 82 GMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred EEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHH
Confidence 7999986 3567789999987542 1111 23467889999996 46789999999999999875
No 468
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=1e-23 Score=239.05 Aligned_cols=209 Identities=23% Similarity=0.298 Sum_probs=161.7
Q ss_pred cEEEEeEEEEe----CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--CCceeEEEcCCCc-------eE
Q 008771 97 GVKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVIKAKSNM-------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~~~~~~~-------~i 163 (554)
.....|+.+.- +.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|... .+
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 34455555444 34579999999999999999999999999999999999754 3578899998643 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|||.|+..-.+..||+|-+.... . + +....++..+..+.+++++
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA--------~-------L---------------------Rlp~~v~~~ek~~yVe~Vi 910 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSA--------A-------L---------------------RLPKEVSDEEKYEYVEEVI 910 (1391)
T ss_pred ceeecccccCcccchHHHHHHHH--------H-------H---------------------cCCCcCCHHHHHHHHHHHH
Confidence 99999987778999999764211 0 0 0111223334446678888
Q ss_pred hhcCCCccccCCCCCC----CChhHHHHHHHHHHHccCC-CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecC
Q 008771 244 PELGFTADDGDRLVAS----FSSGWQMRMSLGKILLQDP-DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~----LSGGqrqRv~LAraL~~~p-~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd 315 (554)
+.++|+ ...+..+.. ||..||+|+.||--|+.+| -||+|||||||||..+...+.+.++ +.|.|||.+=|.
T Consensus 911 ~lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQ 989 (1391)
T KOG0065|consen 911 ELLELK-EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQ 989 (1391)
T ss_pred HHhCch-hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 888886 234444544 9999999999999999999 8999999999999999888877765 479999999999
Q ss_pred HH-HHHhhcceEEEeeCCeeeeccCChh
Q 008771 316 RA-FLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 316 ~~-~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
++ .+.+-.|+++.|..|.-.+|.|+..
T Consensus 990 PS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 990 PSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred CcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 84 4556689999998877777877543
No 469
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.89 E-value=5.8e-23 Score=205.85 Aligned_cols=132 Identities=21% Similarity=0.277 Sum_probs=110.9
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-----e---------
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~-----~--------- 488 (554)
.+++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 46999999999988789999999999999999999999999999999999999999999998865 2
Q ss_pred -----eEEEEecccccCCCCCCCHHHHHHhhc---c--c--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+.+..|+.+++.+.. . . .....+.+++..+++..+.+++++..|||||+|||+|
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 267999987545677789998876421 1 1 1124567889999996556789999999999999975
No 470
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=7.6e-24 Score=202.35 Aligned_cols=129 Identities=29% Similarity=0.385 Sum_probs=111.6
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------E
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-----------~ 490 (554)
.++++++++++.|++-.++++|||+|.+||+++|+||||+|||||+++|+|.++|++|+|.++|.++. +
T Consensus 2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 46789999999999988999999999999999999999999999999999999999999999998762 2
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc------------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcc
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE------------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl 552 (554)
..-+|++ .+++++||.||+.-+.. ....+++..+|+.+|+. +.++++..+||+|||+||
T Consensus 82 ~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 82 ARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHH
Confidence 3458886 58899999999876521 11124688999999995 578999999999999997
Q ss_pred c
Q 008771 553 L 553 (554)
Q Consensus 553 ~ 553 (554)
-
T Consensus 159 E 159 (250)
T COG0411 159 E 159 (250)
T ss_pred H
Confidence 4
No 471
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=6.2e-23 Score=197.76 Aligned_cols=127 Identities=26% Similarity=0.415 Sum_probs=108.3
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 6899999999887899999999999999999999999999999999999999999999998654 2578888
Q ss_pred ccccCCCCCCCHHHHHHhhcc-cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+|+..... ......+..+++.+++. +..++++..|||||+|||+|
T Consensus 82 ~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~l 138 (200)
T PRK13540 82 RS--GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVAL 138 (200)
T ss_pred cc--ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHH
Confidence 74 36678999999875421 12234678899999985 45688999999999999875
No 472
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.5e-23 Score=203.43 Aligned_cols=127 Identities=31% Similarity=0.423 Sum_probs=107.8
Q ss_pred EEEeeeeEecCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~~~----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
|+++|+++.|+++ .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999865 799999999999999999999999999999999999999999999988654
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..|+.||+..... ... ...+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 151 (233)
T cd03258 82 RRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGI 151 (233)
T ss_pred hheEEEccCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHH
Confidence 257999985 36677899999875421 111 23578899999995 56789999999999999875
No 473
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=6e-23 Score=205.69 Aligned_cols=128 Identities=31% Similarity=0.431 Sum_probs=108.7
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
+|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 47899999999887899999999999999999999999999999999999999999999988643 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+.+..||.||+...... .....+..+|..+++. +..++++..|||||||||+|
T Consensus 82 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~l 145 (258)
T PRK13548 82 PQHS--SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQL 145 (258)
T ss_pred ccCC--cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHH
Confidence 9985 355678999998764321 1123577889999995 46789999999999999975
No 474
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5e-23 Score=209.31 Aligned_cols=130 Identities=26% Similarity=0.395 Sum_probs=107.7
Q ss_pred eEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.|+++|+++.|++ +.+++++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3789999999974 3699999999999999999999999999999999999999999999998654
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCCh-hhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~-~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+ +..||.+|+..... ... ...+..+|+.+++.. +..++++..|||||||||+|
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence 2589999864334 45799999975421 111 235788999999962 46789999999999999875
No 475
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=2.6e-24 Score=193.09 Aligned_cols=127 Identities=31% Similarity=0.487 Sum_probs=106.3
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------EEEEe
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFE 494 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------~~y~~ 494 (554)
++++++...-++..+++++||.+.+||+++|+||+|||||||+|+++-+..|++|++.|.|.++. +.|+.
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence 34455544445678999999999999999999999999999999999999999999999998874 35889
Q ss_pred cccccCCCCCCCHHHHHHhhc----ccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAA----EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|.|. | +..||+||+.... .......+...|++|+++...+++++..||||||||.+|
T Consensus 84 Q~pa--L-fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAl 144 (223)
T COG4619 84 QTPA--L-FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIAL 144 (223)
T ss_pred cCcc--c-cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHH
Confidence 9863 5 4469999986542 233456688899999999889999999999999999875
No 476
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=4.5e-23 Score=203.27 Aligned_cols=127 Identities=30% Similarity=0.490 Sum_probs=107.2
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y~ 493 (554)
++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 4689999999887899999999999999999999999999999999999999999999987543 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.+|+..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 144 (232)
T cd03218 81 PQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEI 144 (232)
T ss_pred cCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 9985 46677899999875421 111 23467889999996 56789999999999999875
No 477
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=7.1e-23 Score=212.31 Aligned_cols=132 Identities=29% Similarity=0.399 Sum_probs=112.0
Q ss_pred CCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eE
Q 008771 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LP 490 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~ 490 (554)
.+.++|+++|+++.|+++.+++++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 37 ~~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred CCceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 345689999999999988899999999999999999999999999999999999999999999998754 36
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.|++..... ... ...+..+++.+++. +..++++..|||||||||+|
T Consensus 117 g~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~l 183 (340)
T PRK13536 117 GVVPQFD--NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTL 183 (340)
T ss_pred EEEeCCc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHH
Confidence 8999985 46678999999875321 111 13456789999996 46789999999999999875
No 478
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.8e-23 Score=208.98 Aligned_cols=129 Identities=26% Similarity=0.352 Sum_probs=107.6
Q ss_pred EEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 425 l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
|+++|+++.|+. +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999963 2489999999999999999999999999999999999999999999998654
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhccc--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...++ ..||.+|+...... .. ...+.++|+.+++..+..++++..|||||||||+|
T Consensus 82 ~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 82 VRKKVGVVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred HHhhEEEEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence 25899998744454 46999999765321 11 23567889999996556789999999999999975
No 479
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.89 E-value=4.3e-23 Score=200.85 Aligned_cols=127 Identities=29% Similarity=0.353 Sum_probs=106.5
Q ss_pred EEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.|++ +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964 5799999999999999999999999999999999999999999999988643 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..|+.+|+..... ... ...+..++..+++. +..++++..||||||||++|
T Consensus 81 ~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 81 GVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAI 147 (214)
T ss_pred EEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHH
Confidence 7999985 46677899999876421 111 23577889999995 45789999999999999875
No 480
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=3.9e-23 Score=200.77 Aligned_cols=127 Identities=37% Similarity=0.506 Sum_probs=105.2
Q ss_pred EEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 426 ~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 6799999999999999999999999999999999999999999999988654 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++. ...+..||.+|+..... ... ...+..+++.+++. +.+++++..|||||||||+|
T Consensus 81 ~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 145 (211)
T cd03225 81 FQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAI 145 (211)
T ss_pred ecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHH
Confidence 99853 22356899999875421 111 23577899999995 56789999999999999875
No 481
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.4e-23 Score=204.69 Aligned_cols=128 Identities=26% Similarity=0.340 Sum_probs=108.1
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------------
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------------- 488 (554)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 37899999999887899999999999999999999999999999999999999999999988643
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhc---ccC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAA---EDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+.... ... ....+..++..+|+. +.+++++..|||||||||+|
T Consensus 82 ~~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 82 RNVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred hheEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 257999985 4667789999986421 111 124578889999995 46789999999999999875
No 482
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1.8e-23 Score=188.26 Aligned_cols=128 Identities=31% Similarity=0.419 Sum_probs=109.8
Q ss_pred eEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+|+++++++..++ ..++++|+|.|.+||.+|||||+||||||||-+++|+..|++|+|++.|+++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 7888888887653 3689999999999999999999999999999999999999999999998766
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+|+++|.. .|-+++|..||++.... ......++.+|+++|+. +.+...|.+|||||+|||+|
T Consensus 86 R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHH
Confidence 368999974 57799999999875432 12235689999999995 56899999999999999985
No 483
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.9e-23 Score=205.12 Aligned_cols=128 Identities=29% Similarity=0.448 Sum_probs=108.0
Q ss_pred EEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999987 7799999999999999999999999999999999999999999999988654 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCCh-hhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~-~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.+|+..... .. ....+.+++..+++.. +..++++..|||||||||+|
T Consensus 81 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~l 146 (242)
T cd03295 81 IQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGV 146 (242)
T ss_pred ccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHH
Confidence 9985 46677899999875421 11 1245788999999974 46789999999999999875
No 484
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.6e-23 Score=210.34 Aligned_cols=130 Identities=24% Similarity=0.320 Sum_probs=108.0
Q ss_pred eEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.++++|+++.|++ +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3789999999963 3599999999999999999999999999999999999999999999998654
Q ss_pred ----eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...++. .||.+|+..... ... ...+..+|..+|+..+..++++..|||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 258999986444543 599999975421 111 24577899999996556789999999999999875
No 485
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.1e-23 Score=213.57 Aligned_cols=127 Identities=31% Similarity=0.398 Sum_probs=108.2
Q ss_pred EEEeeeeEecC----CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~----~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 35799999999999999999999999999999999999999999999998653
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 82 ~~ig~v~q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~l 151 (343)
T PRK11153 82 RQIGMIFQHF--NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAI 151 (343)
T ss_pred cCEEEEeCCC--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 268999986 37678999999876421 111 23577889999995 46789999999999999875
No 486
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=8.1e-23 Score=198.02 Aligned_cols=128 Identities=28% Similarity=0.394 Sum_probs=108.7
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEEEEecc
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~y~~Q~ 496 (554)
+++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ ..+|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 47899999999887899999999999999999999999999999999999999999999988653 24788876
Q ss_pred cccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.+|+..... ......+..++..+++.. ..++++..|||||||||+|
T Consensus 82 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~l 138 (207)
T PRK13539 82 N--AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVAL 138 (207)
T ss_pred C--cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHH
Confidence 4 46678899999865321 233456889999999964 5789999999999999874
No 487
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=4.5e-23 Score=209.63 Aligned_cols=128 Identities=34% Similarity=0.489 Sum_probs=112.1
Q ss_pred eEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEE
Q 008771 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~ 493 (554)
.++++|+++.|+ ++.++++|||+|++||++||+||||||||||+|+|+|+.+|++|+|.+.|.++ .+||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 578899999999 68999999999999999999999999999999999999999999999998654 36999
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++. +++..||.|++..... . .....+..+|..+++.. ..++++..||+||||||.|
T Consensus 84 ~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~i 147 (293)
T COG1131 84 PQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSI 147 (293)
T ss_pred ccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHH
Confidence 99863 8899999999976532 1 22457899999999976 3488999999999999864
No 488
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=5.2e-23 Score=203.94 Aligned_cols=127 Identities=28% Similarity=0.355 Sum_probs=107.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNY 492 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~~y 492 (554)
++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 6899999999877899999999999999999999999999999999999999999999998654 2579
Q ss_pred EecccccCCCCCCCHHHHHHhhcc---cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.+|+..... .. ....+.++++.+++. +.+++++..|||||||||+|
T Consensus 82 ~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 82 VFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred Eeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHH
Confidence 99985 46677899999865321 11 123567899999995 46789999999999999875
No 489
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=5.1e-23 Score=216.93 Aligned_cols=129 Identities=26% Similarity=0.472 Sum_probs=110.8
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y 492 (554)
++|+++|+++.|+++.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 368999999999988899999999999999999999999999999999999999999999998654 2689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc----c------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE----D------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~----~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .++++.||.|++..... . .....+..+|+.+++. +..++++..|||||||||+|
T Consensus 82 v~q~~--~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDT--SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLL 150 (402)
T ss_pred EccCC--CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 99985 46678999999875421 0 1124578899999995 57899999999999999875
No 490
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.6e-23 Score=208.05 Aligned_cols=130 Identities=22% Similarity=0.352 Sum_probs=107.7
Q ss_pred eEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.|+++|+++.|++ +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4789999999973 3599999999999999999999999999999999999999999999998653
Q ss_pred ----eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...++ ..||.||+..... ... ...+..+|..+++..+..++++..|||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 25799998643343 5799999975321 111 23578889999996456789999999999999975
No 491
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.5e-23 Score=203.41 Aligned_cols=128 Identities=25% Similarity=0.343 Sum_probs=108.3
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
.++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 37899999999877899999999999999999999999999999999999999999999998654 26799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++. ++. .||.+|+..... .....++..++..+++..+..++++..|||||||||+|
T Consensus 83 ~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 142 (241)
T PRK14250 83 FQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSI 142 (241)
T ss_pred ecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHH
Confidence 99863 433 699999875321 12235678899999996556789999999999999875
No 492
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.89 E-value=6.9e-23 Score=206.27 Aligned_cols=133 Identities=25% Similarity=0.373 Sum_probs=109.5
Q ss_pred CceEEEeeeeEecCC---------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----
Q 008771 422 RSVVTIKNLEFGYED---------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~---------~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---- 488 (554)
+++|+++|+++.|+. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 357999999999962 4699999999999999999999999999999999999999999999988554
Q ss_pred ------eEEEEecccccCCCCCCCHHHHHHhhcc---cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ------LPNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+.+..|+.+++..... .. ..+.+..+++.+++..+..++++..|||||||||+|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 2679999864446677799998764211 11 124578899999996566788999999999999975
No 493
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.9e-23 Score=204.88 Aligned_cols=130 Identities=26% Similarity=0.386 Sum_probs=109.4
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~ 490 (554)
+++++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 3579999999999888899999999999999999999999999999999999999999999998653 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc------------------cC---CHHHHHHHHhhCCCChhhhccccCcCChhhh
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE------------------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------------------~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek 549 (554)
+|++|++ .+++..||.+|+..... .. ....+..++..+++. +..++++..||||||
T Consensus 83 ~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccCc--ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHH
Confidence 6789985 47678899999875321 00 113567789999994 568999999999999
Q ss_pred hcccC
Q 008771 550 IILLY 554 (554)
Q Consensus 550 ~Rl~l 554 (554)
|||+|
T Consensus 160 qrv~l 164 (255)
T PRK11300 160 RRLEI 164 (255)
T ss_pred HHHHH
Confidence 99875
No 494
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.89 E-value=8e-23 Score=204.19 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=109.7
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-----e---------
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~-----~--------- 488 (554)
+.|+++|+++.|++..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 46899999999987779999999999999999999999999999999999999999999998754 2
Q ss_pred -----eEEEEecccccCCCCCCCHHHHHHhhc---c--c--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+.+..|+.+++.... . . .....+..++..+++..+..++++..|||||||||+|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 258999986444556678888875421 1 1 1134678899999996557889999999999999975
No 495
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.89 E-value=4.9e-23 Score=201.60 Aligned_cols=127 Identities=29% Similarity=0.440 Sum_probs=105.6
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y~ 493 (554)
|+++|+++.|++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 4689999999887899999999999999999999999999999999999999999999988543 26799
Q ss_pred ecccccCCCCCCCHHHHHHhhccc----CCHHHHHHHHhhC-CCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~----~~~~~~~~~L~~~-~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..|+.+|+...... .....+..++..+ ++ .+..++++..|||||||||+|
T Consensus 81 ~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrv~l 143 (222)
T cd03224 81 PEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-KERRKQLAGTLSGGEQQMLAI 143 (222)
T ss_pred cccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh-hhhhhCchhhCCHHHHHHHHH
Confidence 9985 466778999999765321 1123456778877 45 456789999999999999875
No 496
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.89 E-value=7.4e-23 Score=203.05 Aligned_cols=128 Identities=30% Similarity=0.419 Sum_probs=109.1
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNY 492 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y 492 (554)
+++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 58899999999877899999999999999999999999999999999999999999999998644 2679
Q ss_pred EecccccCCCCCCCHHHHHHhhccc--------------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAED--------------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~--------------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.||+...... .....+..++..+++. +..++++..|||||+|||+|
T Consensus 82 ~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 82 KFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred ecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 99975 466788999998764210 0123578889999996 46789999999999999875
No 497
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.3e-23 Score=206.39 Aligned_cols=129 Identities=28% Similarity=0.398 Sum_probs=108.7
Q ss_pred eEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEE
Q 008771 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (554)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y 492 (554)
+++++|+++.|+ +..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 689999999996 45799999999999999999999999999999999999999999999998654 2689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++...+ +..||.+|+..... ... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 84 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~l 149 (274)
T PRK13647 84 VFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAI 149 (274)
T ss_pred EecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHH
Confidence 999864334 46799999975421 111 24578889999995 56899999999999999875
No 498
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=9.2e-23 Score=208.80 Aligned_cols=128 Identities=23% Similarity=0.363 Sum_probs=110.2
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEe
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFE 494 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~ 494 (554)
.++++|+++.|++..+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 47899999999888899999999999999999999999999999999999999999999998654 368999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ .++++.||.|++..... ... ...+..+|..|++.. ..++++..|||||||||+|
T Consensus 82 q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~l 144 (301)
T TIGR03522 82 EHN--PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGL 144 (301)
T ss_pred CCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHH
Confidence 985 47788899999875321 111 346788999999964 5789999999999999874
No 499
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.89 E-value=6.8e-23 Score=201.37 Aligned_cols=126 Identities=29% Similarity=0.449 Sum_probs=104.6
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCcee-----------
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~-----~p~~G~i~~~~~~~----------- 488 (554)
|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|++ +|.+|+|.++|.++
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 46899999998878999999999999999999999999999999999999 99999999998653
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhcc--c-C----CHHHHHHHHhhCCCChhhhccc--cCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--D-W----RIDDIKGLLGRCNFKADMLDRK--VSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~-~----~~~~~~~~L~~~~l~~~~~~~~--~~~LSGGek~Rl~l 554 (554)
.++|++|++. ++ ..||.||+..... . . ....+..++..+++.. ..+++ +..|||||||||+|
T Consensus 81 ~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~l 152 (227)
T cd03260 81 RRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQQRLCL 152 (227)
T ss_pred hhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHHHHHHH
Confidence 2579999863 54 7899999875421 1 1 1245778899999964 45666 59999999999875
No 500
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.89 E-value=7.9e-23 Score=205.66 Aligned_cols=131 Identities=27% Similarity=0.455 Sum_probs=109.0
Q ss_pred eEEEeeeeEecC---------CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------
Q 008771 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------ 488 (554)
Q Consensus 424 ~l~~~~l~~~y~---------~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------ 488 (554)
+|+++|+++.|+ ++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 578999999995 35699999999999999999999999999999999999999999999988643
Q ss_pred -------eEEEEecccccCCCCCCCHHHHHHhhcc---c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -------LPNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+++..||.+++..... . .....+.++++.+++.....++++..|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2689999864346677899999864311 1 1124578899999996556789999999999999875
Done!