Query 008771
Match_columns 554
No_of_seqs 429 out of 2810
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 1.1E-61 3.8E-66 553.4 35.1 302 96-497 434-745 (986)
2 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-61 3.8E-66 530.9 25.9 357 98-554 21-412 (538)
3 3bk7_A ABC transporter ATP-bin 100.0 2.3E-61 7.9E-66 533.8 24.0 358 97-554 83-482 (607)
4 3g5u_A MCG1178, multidrug resi 100.0 1.7E-59 5.8E-64 559.5 40.0 258 49-346 341-613 (1284)
5 4f4c_A Multidrug resistance pr 100.0 4.9E-58 1.7E-62 548.3 33.8 260 48-347 368-642 (1321)
6 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-56 3.9E-61 490.2 23.4 355 101-554 3-396 (538)
7 3j16_B RLI1P; ribosome recycli 100.0 2E-54 6.9E-59 477.5 23.6 379 102-554 82-478 (608)
8 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-52 7.1E-57 470.7 19.4 275 109-471 30-369 (670)
9 3tui_C Methionine import ATP-b 100.0 4.4E-49 1.5E-53 407.5 26.3 212 93-345 20-252 (366)
10 3fvq_A Fe(3+) IONS import ATP- 100.0 3E-49 1E-53 408.6 23.4 209 96-345 3-227 (359)
11 2olj_A Amino acid ABC transpor 100.0 1.5E-48 5E-53 389.5 25.1 211 95-345 22-247 (263)
12 3rlf_A Maltose/maltodextrin im 100.0 1.3E-48 4.3E-53 406.6 24.8 208 97-345 3-222 (381)
13 3gfo_A Cobalt import ATP-bindi 100.0 1E-48 3.4E-53 392.9 22.8 210 96-346 6-233 (275)
14 2pcj_A ABC transporter, lipopr 100.0 2E-48 6.8E-53 380.3 24.3 199 96-335 3-218 (224)
15 1b0u_A Histidine permease; ABC 100.0 2.3E-48 7.9E-53 388.5 25.0 209 97-345 6-241 (262)
16 3tif_A Uncharacterized ABC tra 100.0 1.9E-48 6.4E-53 383.2 23.2 202 97-335 1-224 (235)
17 1vpl_A ABC transporter, ATP-bi 100.0 7.6E-48 2.6E-52 383.0 25.5 210 95-345 13-234 (256)
18 4g1u_C Hemin import ATP-bindin 100.0 7.9E-48 2.7E-52 385.2 25.4 206 96-344 10-235 (266)
19 1g6h_A High-affinity branched- 100.0 2.8E-48 9.6E-53 387.1 20.6 217 96-343 6-239 (257)
20 1ji0_A ABC transporter; ATP bi 100.0 8.6E-48 3E-52 379.7 23.8 207 96-344 5-226 (240)
21 1z47_A CYSA, putative ABC-tran 100.0 1E-47 3.5E-52 397.3 24.2 210 95-345 12-234 (355)
22 2it1_A 362AA long hypothetical 100.0 1.9E-47 6.5E-52 396.7 24.9 208 97-345 3-222 (362)
23 2yyz_A Sugar ABC transporter, 100.0 1.6E-47 5.3E-52 396.9 22.6 208 97-345 3-222 (359)
24 1g29_1 MALK, maltose transport 100.0 4.2E-47 1.5E-51 396.1 25.5 208 97-345 3-228 (372)
25 1v43_A Sugar-binding transport 100.0 3E-47 1E-51 396.5 23.6 208 97-345 11-230 (372)
26 1oxx_K GLCV, glucose, ABC tran 100.0 2.3E-47 8E-52 395.7 20.8 208 97-345 3-229 (353)
27 2nq2_C Hypothetical ABC transp 100.0 9E-47 3.1E-51 375.0 24.1 208 96-344 3-215 (253)
28 3d31_A Sulfate/molybdate ABC t 100.0 6.9E-47 2.4E-51 390.8 23.7 203 97-344 1-215 (348)
29 2ihy_A ABC transporter, ATP-bi 100.0 2.6E-47 9E-52 383.8 20.0 214 94-344 18-250 (279)
30 2onk_A Molybdate/tungstate ABC 100.0 6.3E-47 2.1E-51 373.1 21.8 203 97-345 1-215 (240)
31 3nh6_A ATP-binding cassette SU 100.0 9.2E-47 3.1E-51 383.6 22.6 252 55-347 14-278 (306)
32 2yz2_A Putative ABC transporte 100.0 1.6E-46 5.6E-51 376.1 21.9 208 97-345 2-226 (266)
33 2zu0_C Probable ATP-dependent 100.0 5.9E-46 2E-50 372.1 23.7 216 96-344 19-252 (267)
34 2d2e_A SUFC protein; ABC-ATPas 100.0 1.9E-46 6.5E-51 372.3 19.2 209 97-342 3-229 (250)
35 2ixe_A Antigen peptide transpo 100.0 2.6E-45 8.9E-50 368.1 23.1 213 95-346 14-245 (271)
36 2ff7_A Alpha-hemolysin translo 100.0 1.8E-45 6E-50 364.5 20.4 209 97-345 7-231 (247)
37 2pjz_A Hypothetical protein ST 100.0 2.5E-45 8.6E-50 366.1 20.3 199 97-343 1-212 (263)
38 1sgw_A Putative ABC transporte 100.0 5.4E-46 1.9E-50 359.8 14.9 190 96-329 9-206 (214)
39 2qi9_C Vitamin B12 import ATP- 100.0 3.1E-45 1E-49 362.8 20.1 198 96-344 3-220 (249)
40 2pze_A Cystic fibrosis transme 100.0 1.7E-44 5.9E-49 353.6 23.9 207 96-345 5-217 (229)
41 1mv5_A LMRA, multidrug resista 100.0 2.2E-45 7.5E-50 363.3 16.3 203 97-346 1-226 (243)
42 2cbz_A Multidrug resistance-as 100.0 1.3E-44 4.6E-49 356.1 19.2 201 97-346 3-217 (237)
43 2ghi_A Transport protein; mult 100.0 5E-44 1.7E-48 356.7 20.5 202 96-346 16-242 (260)
44 3gd7_A Fusion complex of cysti 100.0 1.9E-43 6.3E-48 370.2 18.7 201 95-346 17-242 (390)
45 3b5x_A Lipid A export ATP-bind 100.0 3.7E-42 1.3E-46 381.2 26.2 255 48-346 297-567 (582)
46 3qf4_A ABC transporter, ATP-bi 100.0 3.9E-42 1.3E-46 380.9 25.5 254 51-347 298-567 (587)
47 4a82_A Cystic fibrosis transme 100.0 2.1E-42 7.3E-47 382.6 22.2 258 48-346 293-564 (578)
48 3qf4_B Uncharacterized ABC tra 100.0 2.4E-42 8.2E-47 383.5 22.3 258 48-347 309-579 (598)
49 2yl4_A ATP-binding cassette SU 100.0 7.8E-42 2.7E-46 379.5 24.4 251 48-346 294-570 (595)
50 3b60_A Lipid A export ATP-bind 100.0 4.4E-42 1.5E-46 380.6 22.3 257 48-346 297-567 (582)
51 2bbs_A Cystic fibrosis transme 100.0 1.1E-41 3.9E-46 344.3 19.6 204 96-345 39-246 (290)
52 4f4c_A Multidrug resistance pr 100.0 2.9E-40 9.8E-45 395.0 17.6 255 55-348 1037-1306(1321)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 2.1E-39 7.1E-44 354.7 19.9 202 95-345 285-492 (538)
54 3bk7_A ABC transporter ATP-bin 100.0 3.8E-39 1.3E-43 356.3 19.3 202 95-345 355-562 (607)
55 3ozx_A RNAse L inhibitor; ATP 100.0 7.6E-39 2.6E-43 349.5 20.6 192 95-332 267-462 (538)
56 2iw3_A Elongation factor 3A; a 100.0 1.1E-38 3.7E-43 364.2 21.5 245 95-341 669-983 (986)
57 3g5u_A MCG1178, multidrug resi 100.0 1.1E-38 3.9E-43 380.3 16.9 215 95-347 1028-1259(1284)
58 3j16_B RLI1P; ribosome recycli 100.0 9.5E-37 3.2E-41 336.6 19.2 198 101-346 350-559 (608)
59 2vf7_A UVRA2, excinuclease ABC 100.0 3.4E-36 1.2E-40 340.8 18.4 183 233-474 354-548 (842)
60 3pih_A Uvrabc system protein A 100.0 8.3E-35 2.8E-39 332.1 23.5 173 239-467 444-627 (916)
61 2ygr_A Uvrabc system protein A 100.0 2.6E-35 8.8E-40 335.1 18.7 179 235-471 498-689 (993)
62 2r6f_A Excinuclease ABC subuni 100.0 5.7E-36 1.9E-40 339.3 13.0 180 234-471 480-671 (972)
63 3ux8_A Excinuclease ABC, A sub 100.0 8.3E-32 2.8E-36 303.0 17.0 107 237-345 521-639 (670)
64 2vf7_A UVRA2, excinuclease ABC 100.0 3E-30 1E-34 292.3 16.5 108 237-346 708-827 (842)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 9.6E-34 3.3E-38 303.4 -12.2 195 95-343 116-335 (460)
66 4aby_A DNA repair protein RECN 100.0 1.4E-29 4.7E-34 269.1 19.5 224 111-336 49-379 (415)
67 1tf7_A KAIC; homohexamer, hexa 100.0 1.1E-31 3.8E-36 293.7 2.3 322 97-554 12-364 (525)
68 3pih_A Uvrabc system protein A 100.0 3.8E-29 1.3E-33 285.5 19.5 108 237-346 783-902 (916)
69 2r6f_A Excinuclease ABC subuni 100.0 2.3E-29 7.9E-34 285.3 16.2 107 238-346 824-942 (972)
70 2ygr_A Uvrabc system protein A 100.0 2.3E-29 8E-34 286.3 15.4 107 238-346 842-960 (993)
71 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.6E-27 1.2E-31 246.3 14.6 81 254-335 274-363 (365)
72 3gfo_A Cobalt import ATP-bindi 99.9 1.8E-26 6.2E-31 231.2 14.9 131 422-554 5-154 (275)
73 3fvq_A Fe(3+) IONS import ATP- 99.9 1.7E-26 5.8E-31 238.6 13.7 128 424-554 4-149 (359)
74 2pcj_A ABC transporter, lipopr 99.9 2.6E-26 8.9E-31 223.7 13.7 129 423-554 3-151 (224)
75 3tif_A Uncharacterized ABC tra 99.9 2.2E-26 7.4E-31 225.9 12.2 129 424-554 1-156 (235)
76 3b85_A Phosphate starvation-in 99.9 3.7E-29 1.2E-33 240.9 -8.1 154 106-333 9-171 (208)
77 1b0u_A Histidine permease; ABC 99.9 3.5E-26 1.2E-30 228.0 12.9 129 423-554 5-164 (262)
78 1sgw_A Putative ABC transporte 99.9 5.5E-26 1.9E-30 219.5 13.9 127 423-554 9-144 (214)
79 3rlf_A Maltose/maltodextrin im 99.9 4.1E-26 1.4E-30 237.3 13.8 128 424-554 3-144 (381)
80 2ihy_A ABC transporter, ATP-bi 99.9 2.9E-26 9.9E-31 230.4 12.3 133 421-554 18-172 (279)
81 2olj_A Amino acid ABC transpor 99.9 4.2E-26 1.4E-30 227.2 13.0 129 423-554 23-170 (263)
82 4g1u_C Hemin import ATP-bindin 99.9 7.2E-26 2.5E-30 226.1 14.1 130 422-554 9-152 (266)
83 1z47_A CYSA, putative ABC-tran 99.9 7.5E-26 2.6E-30 233.8 14.5 132 420-554 10-156 (355)
84 1ji0_A ABC transporter; ATP bi 99.9 6.1E-26 2.1E-30 223.4 12.8 130 422-554 4-150 (240)
85 1e69_A Chromosome segregation 99.9 2E-26 6.8E-31 236.8 9.3 90 253-343 213-310 (322)
86 4gp7_A Metallophosphoesterase; 99.9 9.7E-27 3.3E-31 217.2 6.0 148 115-326 1-168 (171)
87 3tui_C Methionine import ATP-b 99.9 6.8E-26 2.3E-30 234.2 12.6 132 420-554 20-174 (366)
88 1g6h_A High-affinity branched- 99.9 7.3E-26 2.5E-30 225.1 12.3 130 422-554 5-164 (257)
89 2yyz_A Sugar ABC transporter, 99.9 1.5E-25 5.2E-30 232.1 14.5 128 424-554 3-144 (359)
90 1vpl_A ABC transporter, ATP-bi 99.9 1.1E-25 3.7E-30 223.5 12.7 129 423-554 14-157 (256)
91 2it1_A 362AA long hypothetical 99.9 1.7E-25 5.8E-30 231.9 13.9 128 424-554 3-144 (362)
92 1v43_A Sugar-binding transport 99.9 2.2E-25 7.4E-30 232.0 13.8 128 424-554 11-152 (372)
93 3d31_A Sulfate/molybdate ABC t 99.9 2.1E-25 7.3E-30 230.2 13.4 126 425-554 2-138 (348)
94 1oxx_K GLCV, glucose, ABC tran 99.9 2.4E-25 8.2E-30 230.6 13.6 128 424-554 3-151 (353)
95 1ye8_A Protein THEP1, hypothet 99.9 3.1E-26 1.1E-30 215.2 6.0 135 125-325 2-152 (178)
96 2yz2_A Putative ABC transporte 99.9 4.2E-25 1.5E-29 220.7 14.3 130 424-554 2-149 (266)
97 1g29_1 MALK, maltose transport 99.9 4.4E-25 1.5E-29 230.0 14.3 128 424-554 3-150 (372)
98 2ff7_A Alpha-hemolysin translo 99.9 1.1E-24 3.8E-29 215.3 13.1 127 424-554 7-156 (247)
99 2nq2_C Hypothetical ABC transp 99.9 1.5E-24 5.1E-29 215.0 13.2 125 424-554 4-139 (253)
100 2onk_A Molybdate/tungstate ABC 99.9 1.2E-24 4.2E-29 213.9 12.1 124 425-554 2-137 (240)
101 2pjz_A Hypothetical protein ST 99.9 1.1E-24 3.7E-29 217.1 11.6 124 425-554 2-139 (263)
102 2d2e_A SUFC protein; ABC-ATPas 99.9 6.5E-25 2.2E-29 217.4 9.1 129 424-554 3-154 (250)
103 3nh6_A ATP-binding cassette SU 99.9 1.5E-24 5.2E-29 220.1 11.9 129 423-554 52-201 (306)
104 2zu0_C Probable ATP-dependent 99.9 2E-24 7E-29 215.8 11.6 131 422-554 18-175 (267)
105 2ixe_A Antigen peptide transpo 99.9 2E-24 7E-29 216.2 11.4 128 423-554 15-167 (271)
106 1mv5_A LMRA, multidrug resista 99.9 1.8E-24 6.1E-29 213.4 9.7 126 425-554 2-150 (243)
107 2qi9_C Vitamin B12 import ATP- 99.9 6.9E-24 2.3E-28 209.6 13.9 123 424-554 4-137 (249)
108 1tq4_A IIGP1, interferon-induc 99.9 1.5E-27 5.1E-32 251.3 -13.2 171 110-332 36-254 (413)
109 2v9p_A Replication protein E1; 99.9 1.1E-28 3.9E-33 249.8 -21.2 207 48-344 57-264 (305)
110 2pze_A Cystic fibrosis transme 99.9 1.7E-23 6E-28 204.4 14.8 124 424-554 6-141 (229)
111 2cbz_A Multidrug resistance-as 99.9 6.7E-24 2.3E-28 208.4 10.7 124 424-554 3-138 (237)
112 2ghi_A Transport protein; mult 99.9 1.4E-23 4.7E-28 209.0 12.5 128 423-554 16-166 (260)
113 3b9q_A Chloroplast SRP recepto 99.9 6.3E-25 2.1E-29 223.2 -0.8 173 107-334 84-284 (302)
114 3gd7_A Fusion complex of cysti 99.9 4.5E-23 1.5E-27 215.8 12.1 126 423-554 18-166 (390)
115 1znw_A Guanylate kinase, GMP k 99.9 8E-26 2.7E-30 217.4 -9.2 174 110-330 9-202 (207)
116 3qkt_A DNA double-strand break 99.9 1.9E-21 6.6E-26 201.1 18.5 82 252-334 241-333 (339)
117 3b5x_A Lipid A export ATP-bind 99.9 3.1E-22 1.1E-26 221.5 13.0 128 423-554 340-491 (582)
118 3b60_A Lipid A export ATP-bind 99.9 3.7E-22 1.3E-26 220.9 13.6 128 423-554 340-491 (582)
119 2og2_A Putative signal recogni 99.9 1E-23 3.4E-28 218.4 0.5 165 114-333 148-340 (359)
120 2yl4_A ATP-binding cassette SU 99.9 6.7E-22 2.3E-26 219.4 13.5 127 425-554 342-494 (595)
121 3aez_A Pantothenate kinase; tr 99.9 2.4E-25 8.4E-30 227.2 -13.2 180 95-332 41-245 (312)
122 2dpy_A FLII, flagellum-specifi 99.9 6.7E-24 2.3E-28 226.0 -2.7 173 96-335 130-334 (438)
123 2o5v_A DNA replication and rep 99.9 2.4E-21 8.1E-26 200.9 15.8 84 254-342 259-352 (359)
124 4a82_A Cystic fibrosis transme 99.9 7.1E-22 2.4E-26 218.4 12.5 129 423-554 338-488 (578)
125 1z6g_A Guanylate kinase; struc 99.9 5.6E-25 1.9E-29 213.5 -11.9 170 111-328 11-206 (218)
126 2bbs_A Cystic fibrosis transme 99.9 8E-22 2.7E-26 199.0 10.8 122 423-554 39-170 (290)
127 3qf4_B Uncharacterized ABC tra 99.9 5.7E-22 1.9E-26 219.9 10.4 128 423-554 353-502 (598)
128 4ad8_A DNA repair protein RECN 99.9 5.2E-21 1.8E-25 208.8 17.6 77 255-332 392-473 (517)
129 3qf4_A ABC transporter, ATP-bi 99.9 1.2E-21 3.9E-26 216.9 12.0 129 423-554 340-490 (587)
130 2o8b_B DNA mismatch repair pro 99.8 2.6E-22 9E-27 232.9 5.5 164 95-335 748-930 (1022)
131 2pt7_A CAG-ALFA; ATPase, prote 99.8 4E-23 1.4E-27 212.6 -3.3 141 100-333 151-291 (330)
132 2obl_A ESCN; ATPase, hydrolase 99.8 2.9E-22 1E-26 207.2 -1.1 174 96-335 44-245 (347)
133 3sop_A Neuronal-specific septi 99.8 5.5E-23 1.9E-27 205.7 -6.5 143 125-319 4-153 (270)
134 1tf7_A KAIC; homohexamer, hexa 99.8 1.3E-21 4.6E-26 213.9 3.0 168 98-333 258-444 (525)
135 1ewq_A DNA mismatch repair pro 99.8 1E-20 3.5E-25 213.5 6.5 147 95-323 548-704 (765)
136 1cr0_A DNA primase/helicase; R 99.8 4.7E-21 1.6E-25 194.2 2.7 180 110-333 22-236 (296)
137 2jeo_A Uridine-cytidine kinase 99.8 8.4E-21 2.9E-25 187.2 3.8 166 108-326 10-176 (245)
138 2eyu_A Twitching motility prot 99.8 1.1E-21 3.8E-26 195.3 -3.0 141 98-331 6-147 (261)
139 2i3b_A HCR-ntpase, human cance 99.8 3.2E-21 1.1E-25 182.6 -1.7 148 123-342 1-174 (189)
140 1w1w_A Structural maintenance 99.8 7.4E-19 2.5E-23 187.5 15.8 75 255-330 329-410 (430)
141 3thx_A DNA mismatch repair pro 99.8 2.4E-19 8.3E-24 205.7 11.6 153 96-334 630-802 (934)
142 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.8E-19 9.5E-24 162.3 9.0 81 253-334 51-142 (148)
143 4a74_A DNA repair and recombin 99.8 2.8E-20 9.6E-25 180.5 1.9 73 260-332 100-200 (231)
144 3thx_B DNA mismatch repair pro 99.8 1.4E-19 4.7E-24 207.2 5.9 152 97-325 640-804 (918)
145 2ehv_A Hypothetical protein PH 99.8 4.4E-20 1.5E-24 181.4 1.2 72 260-331 118-207 (251)
146 3auy_A DNA double-strand break 99.8 1E-17 3.5E-22 175.2 17.2 75 255-330 276-359 (371)
147 2qnr_A Septin-2, protein NEDD5 99.8 5.3E-21 1.8E-25 194.4 -8.1 158 101-317 2-168 (301)
148 3asz_A Uridine kinase; cytidin 99.7 1.4E-20 4.8E-25 180.7 -9.7 143 120-317 3-162 (211)
149 1wb9_A DNA mismatch repair pro 99.7 4.2E-18 1.4E-22 193.2 5.0 159 96-332 576-745 (800)
150 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.1E-17 3.8E-22 162.0 6.8 163 110-332 9-192 (235)
151 1rj9_A FTSY, signal recognitio 99.7 3.8E-18 1.3E-22 173.3 3.0 140 122-316 101-258 (304)
152 3szr_A Interferon-induced GTP- 99.7 4.6E-19 1.6E-23 196.6 -7.6 152 96-317 9-197 (608)
153 3kta_B Chromosome segregation 99.7 3.7E-16 1.3E-20 145.4 13.0 94 252-346 57-158 (173)
154 1pui_A ENGB, probable GTP-bind 99.7 1.3E-18 4.5E-23 166.2 -4.3 180 97-303 3-194 (210)
155 2qag_C Septin-7; cell cycle, c 99.7 3.3E-18 1.1E-22 180.7 -2.3 161 95-318 9-179 (418)
156 3jvv_A Twitching mobility prot 99.7 1.9E-17 6.5E-22 171.6 2.8 139 101-332 92-246 (356)
157 1nlf_A Regulatory protein REPA 99.6 2.8E-16 9.7E-21 157.6 9.3 146 120-320 27-185 (279)
158 1pzn_A RAD51, DNA repair and r 99.6 4.3E-17 1.5E-21 168.9 0.9 152 111-334 118-304 (349)
159 2cvh_A DNA repair and recombin 99.6 2.6E-15 8.9E-20 144.3 8.4 74 259-332 84-185 (220)
160 1s96_A Guanylate kinase, GMP k 99.6 3.3E-16 1.1E-20 151.6 0.4 128 117-321 10-145 (219)
161 2ewv_A Twitching motility prot 99.5 5.9E-16 2E-20 161.7 1.6 123 112-329 127-256 (372)
162 2gza_A Type IV secretion syste 99.5 4.5E-16 1.5E-20 162.0 -0.8 144 99-333 137-303 (361)
163 2qag_B Septin-6, protein NEDD5 99.5 6E-16 2.1E-20 162.8 -0.1 178 98-316 17-219 (427)
164 1lw7_A Transcriptional regulat 99.5 2.9E-18 9.8E-23 179.0 -19.5 165 112-329 157-341 (365)
165 1zp6_A Hypothetical protein AT 99.5 1.6E-16 5.6E-21 149.6 -6.1 155 119-327 5-170 (191)
166 2npi_A Protein CLP1; CLP1-PCF1 99.5 1.4E-17 4.6E-22 178.3 -15.9 123 422-554 116-246 (460)
167 1htw_A HI0065; nucleotide-bind 99.5 1.4E-16 4.7E-21 146.3 -7.0 83 99-183 9-96 (158)
168 2v9p_A Replication protein E1; 99.5 1.1E-16 3.7E-21 162.0 -10.2 107 424-551 101-208 (305)
169 1n0w_A DNA repair protein RAD5 99.5 2.2E-13 7.5E-18 132.8 11.4 31 119-149 20-52 (243)
170 3aez_A Pantothenate kinase; tr 99.4 7.2E-16 2.4E-20 157.1 -7.5 117 424-554 43-187 (312)
171 2bdt_A BH3686; alpha-beta prot 99.4 8.3E-17 2.8E-21 151.7 -14.6 162 123-341 2-179 (189)
172 2rcn_A Probable GTPase ENGC; Y 99.4 5.5E-14 1.9E-18 145.0 4.7 116 112-274 205-328 (358)
173 2bbw_A Adenylate kinase 4, AK4 99.4 1.7E-15 5.8E-20 149.1 -6.7 143 122-304 26-195 (246)
174 1htw_A HI0065; nucleotide-bind 99.4 4.4E-15 1.5E-19 136.2 -4.8 83 427-513 10-97 (158)
175 3e70_C DPA, signal recognition 99.4 4.5E-14 1.5E-18 144.6 2.0 155 120-333 126-305 (328)
176 2jeo_A Uridine-cytidine kinase 99.4 1E-13 3.5E-18 136.3 3.4 110 435-554 10-127 (245)
177 2qm8_A GTPase/ATPase; G protei 99.4 3.2E-16 1.1E-20 161.6 -15.3 78 97-174 29-120 (337)
178 3sop_A Neuronal-specific septi 99.4 2.7E-14 9.2E-19 142.6 -2.4 96 452-554 4-109 (270)
179 2yhs_A FTSY, cell division pro 99.4 1.3E-13 4.4E-18 147.0 2.6 147 113-314 283-447 (503)
180 1z6g_A Guanylate kinase; struc 99.4 1E-13 3.5E-18 134.0 1.3 106 438-554 11-133 (218)
181 3ec2_A DNA replication protein 99.3 2.1E-14 7.1E-19 134.2 -4.0 43 275-317 98-144 (180)
182 1nij_A Hypothetical protein YJ 99.3 1.8E-15 6.1E-20 154.8 -12.8 55 259-322 141-195 (318)
183 1udx_A The GTP-binding protein 99.3 1.2E-13 4.2E-18 145.6 0.9 147 112-314 146-306 (416)
184 2dpy_A FLII, flagellum-specifi 99.3 2.2E-14 7.4E-19 152.7 -5.2 120 423-554 130-268 (438)
185 3b85_A Phosphate starvation-in 99.3 1.9E-14 6.6E-19 138.0 -5.7 45 433-482 9-53 (208)
186 1tq4_A IIGP1, interferon-induc 99.3 2.1E-14 7.3E-19 151.1 -6.1 109 437-554 36-167 (413)
187 1p9r_A General secretion pathw 99.3 3.8E-15 1.3E-19 157.3 -13.3 62 97-160 143-204 (418)
188 3lda_A DNA repair protein RAD5 99.3 6.4E-12 2.2E-16 131.9 10.9 34 119-152 174-209 (400)
189 1sxj_E Activator 1 40 kDa subu 99.3 3.7E-12 1.3E-16 131.4 7.6 139 125-329 38-188 (354)
190 2f1r_A Molybdopterin-guanine d 99.3 4.2E-14 1.4E-18 131.4 -6.7 37 124-160 3-42 (171)
191 4aby_A DNA repair protein RECN 99.3 5.6E-12 1.9E-16 133.3 7.7 37 438-475 49-85 (415)
192 2oap_1 GSPE-2, type II secreti 99.2 2.7E-14 9.4E-19 154.6 -11.0 184 111-324 248-458 (511)
193 2yv5_A YJEQ protein; hydrolase 99.2 6.6E-13 2.3E-17 134.7 -0.8 121 120-272 162-300 (302)
194 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.1E-13 3.9E-18 144.6 -7.3 161 119-343 16-210 (392)
195 1sq5_A Pantothenate kinase; P- 99.2 4.2E-14 1.4E-18 144.0 -10.9 84 96-182 36-149 (308)
196 2obl_A ESCN; ATPase, hydrolase 99.2 2.5E-12 8.5E-17 132.8 2.2 63 423-486 44-107 (347)
197 1p9r_A General secretion pathw 99.2 1.9E-13 6.5E-18 144.4 -7.8 125 424-553 143-303 (418)
198 3c8u_A Fructokinase; YP_612366 99.2 2.3E-13 7.8E-18 130.3 -6.8 148 120-325 19-168 (208)
199 3b9q_A Chloroplast SRP recepto 99.2 3.4E-13 1.2E-17 136.7 -6.0 105 441-553 91-211 (302)
200 1odf_A YGR205W, hypothetical 3 99.2 6.9E-13 2.4E-17 133.7 -3.9 134 121-294 29-169 (290)
201 2kjq_A DNAA-related protein; s 99.2 1.4E-11 4.9E-16 111.6 4.9 35 112-152 30-64 (149)
202 1ls1_A Signal recognition part 99.1 4.5E-11 1.5E-15 120.7 6.5 130 98-303 77-207 (295)
203 1in4_A RUVB, holliday junction 99.1 1.2E-13 4E-18 142.3 -13.0 168 98-325 19-211 (334)
204 4gp7_A Metallophosphoesterase; 99.1 4.6E-12 1.6E-16 117.5 -1.0 94 442-554 1-94 (171)
205 2og2_A Putative signal recogni 99.1 1.5E-12 5.1E-17 134.7 -6.0 103 442-553 149-268 (359)
206 1u0l_A Probable GTPase ENGC; p 99.1 1.9E-12 6.6E-17 131.2 -5.3 54 119-172 165-231 (301)
207 1u0l_A Probable GTPase ENGC; p 99.1 6.1E-12 2.1E-16 127.5 -1.8 101 445-546 164-294 (301)
208 2gza_A Type IV secretion syste 99.1 1.8E-11 6.1E-16 127.2 1.1 90 426-515 137-249 (361)
209 2px0_A Flagellar biosynthesis 99.1 2.2E-10 7.7E-15 115.6 8.4 136 121-335 103-245 (296)
210 2qnr_A Septin-2, protein NEDD5 99.1 4.4E-12 1.5E-16 128.6 -4.3 115 428-554 2-124 (301)
211 2x8a_A Nuclear valosin-contain 99.0 5E-14 1.7E-18 141.0 -18.6 47 109-159 32-78 (274)
212 1lvg_A Guanylate kinase, GMP k 99.0 2E-13 6.8E-18 129.9 -13.8 57 270-331 116-173 (198)
213 2yv5_A YJEQ protein; hydrolase 99.0 3.4E-11 1.2E-15 122.1 1.8 105 446-552 161-296 (302)
214 1ye8_A Protein THEP1, hypothet 99.0 4.8E-12 1.6E-16 118.3 -4.6 80 452-554 2-87 (178)
215 3asz_A Uridine kinase; cytidin 99.0 1.1E-10 3.9E-15 111.3 4.4 90 447-549 3-95 (211)
216 3euj_A Chromosome partition pr 99.0 6.6E-11 2.2E-15 126.5 2.9 59 99-160 8-66 (483)
217 2dr3_A UPF0273 protein PH0284; 99.0 1.2E-09 4.1E-14 106.2 11.7 56 276-331 127-196 (247)
218 1vma_A Cell division protein F 99.0 1.4E-10 4.8E-15 117.5 4.8 99 115-288 96-197 (306)
219 2rcn_A Probable GTPase ENGC; Y 99.0 2.3E-11 7.9E-16 125.4 -1.2 106 441-554 207-324 (358)
220 1t9h_A YLOQ, probable GTPase E 98.9 2.3E-11 7.8E-16 123.1 -4.1 68 118-186 168-251 (307)
221 3euj_A Chromosome partition pr 98.9 2.2E-10 7.4E-15 122.5 2.3 50 438-488 18-67 (483)
222 2ius_A DNA translocase FTSK; n 98.9 3.1E-11 1.1E-15 129.9 -6.0 174 115-329 159-362 (512)
223 1ypw_A Transitional endoplasmi 98.9 4.1E-10 1.4E-14 128.7 2.8 33 443-475 504-536 (806)
224 2pt7_A CAG-ALFA; ATPase, prote 98.9 7.7E-11 2.6E-15 120.9 -3.2 50 438-487 159-208 (330)
225 1in4_A RUVB, holliday junction 98.9 1.6E-11 5.5E-16 126.3 -9.0 122 426-553 20-172 (334)
226 2yhs_A FTSY, cell division pro 98.8 2.8E-10 9.6E-15 121.3 -0.5 72 441-514 284-371 (503)
227 2eyu_A Twitching motility prot 98.8 1.3E-10 4.5E-15 115.2 -3.1 58 425-488 6-64 (261)
228 2f1r_A Molybdopterin-guanine d 98.8 1.1E-10 3.7E-15 108.3 -4.0 37 451-487 3-42 (171)
229 3tr0_A Guanylate kinase, GMP k 98.8 3.5E-10 1.2E-14 107.1 -1.0 60 117-180 1-70 (205)
230 2i3b_A HCR-ntpase, human cance 98.8 3.4E-10 1.2E-14 106.7 -1.1 45 450-496 1-53 (189)
231 1qhl_A Protein (cell division 98.8 1E-10 3.5E-15 113.3 -5.2 55 97-159 9-63 (227)
232 1rj9_A FTSY, signal recognitio 98.8 1.2E-09 4E-14 110.7 2.0 64 449-514 101-180 (304)
233 1t9h_A YLOQ, probable GTPase E 98.8 6.9E-10 2.4E-14 112.2 -0.0 103 446-550 169-302 (307)
234 3k1j_A LON protease, ATP-depen 98.8 1.3E-09 4.6E-14 120.8 1.5 180 101-303 38-226 (604)
235 1znw_A Guanylate kinase, GMP k 98.8 1.7E-09 5.7E-14 103.2 1.8 37 438-476 10-46 (207)
236 3kta_A Chromosome segregation 98.7 1.7E-09 5.9E-14 100.5 1.7 96 441-537 18-140 (182)
237 2oap_1 GSPE-2, type II secreti 98.7 2.8E-09 9.5E-14 115.4 3.5 50 438-487 248-297 (511)
238 1sq5_A Pantothenate kinase; P- 98.7 2E-10 6.9E-15 116.7 -5.2 85 424-513 37-151 (308)
239 2r6a_A DNAB helicase, replicat 98.7 7.1E-09 2.4E-13 110.9 6.5 178 110-333 190-400 (454)
240 1e69_A Chromosome segregation 98.7 7.7E-09 2.6E-13 105.6 6.2 33 441-474 16-48 (322)
241 2zr9_A Protein RECA, recombina 98.7 1.1E-08 3.6E-13 105.7 7.3 69 266-334 126-232 (349)
242 2qm8_A GTPase/ATPase; G protei 98.7 1.2E-10 4.2E-15 119.7 -7.3 63 425-487 30-92 (337)
243 2x8a_A Nuclear valosin-contain 98.7 3E-11 1E-15 120.8 -11.6 106 437-554 33-148 (274)
244 1iy2_A ATP-dependent metallopr 98.7 2.2E-12 7.4E-17 129.1 -20.7 56 99-158 51-106 (278)
245 3lnc_A Guanylate kinase, GMP k 98.7 3.6E-09 1.2E-13 102.5 2.6 38 111-148 15-53 (231)
246 3szr_A Interferon-induced GTP- 98.7 6.2E-10 2.1E-14 123.3 -3.5 86 424-514 10-121 (608)
247 1s96_A Guanylate kinase, GMP k 98.7 4.4E-09 1.5E-13 101.4 1.5 53 445-497 11-71 (219)
248 1oix_A RAS-related protein RAB 98.6 1.2E-08 4.3E-13 95.6 3.9 35 267-303 153-187 (191)
249 3nwj_A ATSK2; P loop, shikimat 98.6 1.4E-09 5E-14 106.9 -2.8 52 96-147 16-72 (250)
250 3lnc_A Guanylate kinase, GMP k 98.6 6.8E-09 2.3E-13 100.6 2.0 36 439-474 16-52 (231)
251 3e70_C DPA, signal recognition 98.6 5.4E-09 1.8E-13 106.9 1.2 66 447-514 126-207 (328)
252 1svm_A Large T antigen; AAA+ f 98.6 1.3E-10 4.5E-15 121.0 -11.7 149 111-288 157-312 (377)
253 1pui_A ENGB, probable GTP-bind 98.6 5.4E-09 1.9E-13 99.0 -0.5 57 424-483 3-64 (210)
254 2qag_B Septin-6, protein NEDD5 98.6 5.2E-09 1.8E-13 110.1 -0.8 83 424-512 16-104 (427)
255 1qhl_A Protein (cell division 98.6 1.1E-09 3.6E-14 106.2 -5.9 57 424-488 9-65 (227)
256 2e87_A Hypothetical protein PH 98.5 1.2E-07 4.2E-12 98.0 8.7 63 254-317 226-293 (357)
257 3kta_A Chromosome segregation 98.5 3.2E-08 1.1E-12 91.9 3.8 57 114-171 18-90 (182)
258 3nwj_A ATSK2; P loop, shikimat 98.5 7E-09 2.4E-13 102.0 -1.7 54 422-475 15-73 (250)
259 1zp6_A Hypothetical protein AT 98.5 4.5E-08 1.6E-12 91.4 3.9 101 446-553 5-119 (191)
260 3tr0_A Guanylate kinase, GMP k 98.5 5.1E-08 1.8E-12 92.0 4.0 32 444-475 1-32 (205)
261 4eun_A Thermoresistant glucoki 98.5 1.2E-08 4.2E-13 96.5 -0.8 40 117-160 23-62 (200)
262 1jjv_A Dephospho-COA kinase; P 98.4 1.1E-07 3.7E-12 90.1 4.8 70 260-331 60-132 (206)
263 2qag_C Septin-7; cell cycle, c 98.4 9.4E-08 3.2E-12 100.7 4.3 51 423-479 10-60 (418)
264 1ls1_A Signal recognition part 98.4 2.1E-09 7.1E-14 108.5 -8.1 46 441-488 91-136 (295)
265 3hr8_A Protein RECA; alpha and 98.4 2E-07 6.8E-12 96.1 6.3 36 119-154 57-92 (356)
266 2xau_A PRE-mRNA-splicing facto 98.4 1.9E-07 6.4E-12 106.2 6.2 72 255-326 186-262 (773)
267 4a74_A DNA repair and recombin 98.4 1.3E-07 4.5E-12 90.6 4.0 64 446-512 21-95 (231)
268 1odf_A YGR205W, hypothetical 3 98.4 5.8E-08 2E-12 97.6 1.3 95 449-553 30-144 (290)
269 1nlf_A Regulatory protein REPA 98.4 9.7E-08 3.3E-12 95.2 2.8 98 446-552 26-127 (279)
270 2f9l_A RAB11B, member RAS onco 98.4 1.8E-07 6E-12 88.0 4.4 34 268-303 130-163 (199)
271 3c8u_A Fructokinase; YP_612366 98.4 8.2E-08 2.8E-12 91.4 2.0 31 447-477 19-49 (208)
272 1ewq_A DNA mismatch repair pro 98.4 3.9E-08 1.3E-12 111.1 -0.6 81 424-513 550-634 (765)
273 3thx_B DNA mismatch repair pro 98.4 2.2E-08 7.6E-13 114.8 -2.7 50 424-473 640-696 (918)
274 3uie_A Adenylyl-sulfate kinase 98.4 1.4E-08 4.6E-13 96.2 -3.8 57 101-158 3-61 (200)
275 2ehv_A Hypothetical protein PH 98.3 1.3E-07 4.4E-12 91.9 2.7 58 425-485 7-67 (251)
276 1fnn_A CDC6P, cell division co 98.3 2.7E-06 9.4E-11 88.0 12.8 47 276-323 124-176 (389)
277 1lw7_A Transcriptional regulat 98.3 4.1E-08 1.4E-12 102.0 -1.5 44 440-483 158-207 (365)
278 2o8b_B DNA mismatch repair pro 98.3 2.3E-07 7.9E-12 107.9 3.9 55 421-476 747-814 (1022)
279 2ce7_A Cell division protein F 98.3 2.7E-07 9.2E-12 98.8 4.0 59 262-320 93-168 (476)
280 3a00_A Guanylate kinase, GMP k 98.3 1.6E-07 5.4E-12 87.8 1.9 27 123-149 1-27 (186)
281 1lvg_A Guanylate kinase, GMP k 98.3 1.3E-07 4.6E-12 89.4 1.3 29 447-475 1-29 (198)
282 1cr0_A DNA primase/helicase; R 98.3 7.2E-08 2.5E-12 96.9 -0.7 45 438-482 23-68 (296)
283 2j41_A Guanylate kinase; GMP, 98.3 3.3E-07 1.1E-11 86.4 3.9 35 118-152 1-35 (207)
284 3uie_A Adenylyl-sulfate kinase 98.3 2.8E-08 9.4E-13 94.1 -3.8 59 429-488 4-64 (200)
285 2qtf_A Protein HFLX, GTP-bindi 98.3 7.9E-07 2.7E-11 92.2 6.6 61 239-303 281-349 (364)
286 4e22_A Cytidylate kinase; P-lo 98.2 1.2E-07 4E-12 93.3 -0.4 42 111-155 18-62 (252)
287 2j41_A Guanylate kinase; GMP, 98.2 5.5E-07 1.9E-11 84.9 4.1 35 445-479 1-35 (207)
288 3a00_A Guanylate kinase, GMP k 98.2 2.5E-07 8.4E-12 86.5 1.6 26 450-475 1-26 (186)
289 3t34_A Dynamin-related protein 98.2 5.2E-06 1.8E-10 85.8 11.7 43 110-155 24-68 (360)
290 2ewv_A Twitching motility prot 98.2 1.3E-07 4.4E-12 98.4 -1.2 56 439-496 127-189 (372)
291 4a1f_A DNAB helicase, replicat 98.2 1.6E-06 5.5E-11 88.7 6.1 54 259-314 109-164 (338)
292 4dcu_A GTP-binding protein ENG 98.2 4.6E-06 1.6E-10 89.1 9.7 57 263-319 88-144 (456)
293 3cmw_A Protein RECA, recombina 98.2 1.4E-05 4.9E-10 96.4 14.9 31 447-477 729-759 (1706)
294 3thx_A DNA mismatch repair pro 98.1 1.5E-06 5E-11 100.1 6.0 59 422-480 629-700 (934)
295 4eun_A Thermoresistant glucoki 98.1 7.3E-07 2.5E-11 84.2 2.8 42 443-488 22-63 (200)
296 4e22_A Cytidylate kinase; P-lo 98.1 2.4E-07 8.3E-12 91.0 -0.6 35 448-482 25-62 (252)
297 3vaa_A Shikimate kinase, SK; s 98.1 1E-06 3.4E-11 83.1 3.4 38 110-147 12-49 (199)
298 1svm_A Large T antigen; AAA+ f 98.1 7E-08 2.4E-12 100.3 -5.1 43 438-483 157-199 (377)
299 3jvv_A Twitching mobility prot 98.1 3.8E-07 1.3E-11 94.2 -0.1 67 446-514 119-192 (356)
300 1kgd_A CASK, peripheral plasma 98.1 8.7E-07 3E-11 82.3 2.3 35 122-156 4-39 (180)
301 2qby_A CDC6 homolog 1, cell di 98.1 1.8E-06 6.2E-11 89.0 4.9 45 277-321 128-178 (386)
302 1v5w_A DMC1, meiotic recombina 98.1 6.9E-06 2.4E-10 84.4 8.9 28 119-146 118-145 (343)
303 1zu4_A FTSY; GTPase, signal re 98.1 7E-07 2.4E-11 90.9 1.1 46 113-158 95-140 (320)
304 2bbw_A Adenylate kinase 4, AK4 98.1 1E-06 3.5E-11 86.0 2.0 63 449-513 26-97 (246)
305 2bdt_A BH3686; alpha-beta prot 98.1 1.2E-06 4E-11 81.8 2.3 35 450-487 2-36 (189)
306 1wb9_A DNA mismatch repair pro 98.0 2.4E-06 8.2E-11 97.0 5.0 50 424-474 577-631 (800)
307 2w0m_A SSO2452; RECA, SSPF, un 98.0 5.2E-07 1.8E-11 86.4 -0.5 46 438-483 10-56 (235)
308 1kgd_A CASK, peripheral plasma 98.0 1.4E-06 4.9E-11 80.8 2.4 34 448-481 3-37 (180)
309 1ixz_A ATP-dependent metallopr 98.0 1.1E-07 3.7E-12 93.3 -5.8 57 98-158 26-82 (254)
310 3vaa_A Shikimate kinase, SK; s 98.0 2.1E-06 7.3E-11 80.8 3.4 37 438-474 13-49 (199)
311 2z43_A DNA repair and recombin 98.0 1.4E-05 4.8E-10 81.3 9.3 28 119-146 103-130 (324)
312 2dy1_A Elongation factor G; tr 98.0 1.6E-06 5.5E-11 96.9 2.4 47 271-319 93-139 (665)
313 3tqc_A Pantothenate kinase; bi 98.0 1.3E-07 4.6E-12 96.0 -6.0 62 102-172 65-134 (321)
314 1ixz_A ATP-dependent metallopr 98.0 2.2E-07 7.6E-12 91.0 -4.3 58 425-486 26-83 (254)
315 1iy2_A ATP-dependent metallopr 98.0 2.6E-07 8.9E-12 92.0 -4.3 58 425-486 50-107 (278)
316 1udx_A The GTP-binding protein 97.9 4.4E-06 1.5E-10 87.9 4.5 34 440-473 147-180 (416)
317 1knq_A Gluconate kinase; ALFA/ 97.9 7E-07 2.4E-11 82.1 -1.5 35 121-159 6-40 (175)
318 2vp4_A Deoxynucleoside kinase; 97.9 2.9E-06 1E-10 81.9 2.6 39 117-159 14-52 (230)
319 3ec2_A DNA replication protein 97.9 7.9E-07 2.7E-11 82.3 -1.8 36 444-479 32-67 (180)
320 1w1w_A Structural maintenance 97.9 4.6E-06 1.6E-10 88.4 3.9 48 425-478 7-54 (430)
321 1n0w_A DNA repair protein RAD5 97.9 8.3E-06 2.8E-10 78.6 5.3 41 446-486 20-67 (243)
322 1rz3_A Hypothetical protein rb 97.9 1.7E-06 5.9E-11 81.7 0.4 39 447-485 19-57 (201)
323 2vp4_A Deoxynucleoside kinase; 97.9 3.1E-06 1.1E-10 81.8 2.2 37 446-486 16-52 (230)
324 1rz3_A Hypothetical protein rb 97.9 2E-06 6.8E-11 81.3 0.7 38 120-157 19-56 (201)
325 1oix_A RAS-related protein RAB 97.9 1.1E-05 3.8E-10 75.2 5.7 38 452-489 31-79 (191)
326 3tqc_A Pantothenate kinase; bi 97.9 5E-07 1.7E-11 91.8 -3.9 51 431-481 67-125 (321)
327 1nij_A Hypothetical protein YJ 97.9 2.7E-06 9.2E-11 86.5 1.6 38 451-488 5-50 (318)
328 3tau_A Guanylate kinase, GMP k 97.9 5.8E-06 2E-10 78.6 3.5 29 121-149 6-34 (208)
329 3bh0_A DNAB-like replicative h 97.9 9.7E-06 3.3E-10 82.2 5.4 54 260-315 134-190 (315)
330 2kjq_A DNAA-related protein; s 97.8 3.7E-06 1.3E-10 75.7 1.4 37 449-486 35-73 (149)
331 2ffh_A Protein (FFH); SRP54, s 97.8 9.1E-06 3.1E-10 85.6 4.5 54 100-157 79-132 (425)
332 2o5v_A DNA replication and rep 97.8 9.2E-06 3.1E-10 83.8 4.5 33 439-472 16-48 (359)
333 3tau_A Guanylate kinase, GMP k 97.8 8.6E-06 3E-10 77.3 3.8 29 448-476 6-34 (208)
334 1zu4_A FTSY; GTPase, signal re 97.8 2.2E-06 7.6E-11 87.2 -0.4 47 441-487 96-142 (320)
335 3kl4_A SRP54, signal recogniti 97.8 4E-05 1.4E-09 80.9 9.0 35 122-156 96-130 (433)
336 3ney_A 55 kDa erythrocyte memb 97.8 6.3E-06 2.1E-10 77.7 2.5 32 117-148 13-44 (197)
337 2qt1_A Nicotinamide riboside k 97.8 1E-05 3.4E-10 76.5 3.7 42 119-173 17-58 (207)
338 1knq_A Gluconate kinase; ALFA/ 97.8 6.8E-06 2.3E-10 75.4 2.1 37 448-488 6-42 (175)
339 3lxx_A GTPase IMAP family memb 97.8 4.9E-05 1.7E-09 73.5 8.3 29 125-153 31-59 (239)
340 3cr8_A Sulfate adenylyltranfer 97.8 4.2E-06 1.5E-10 91.1 0.6 40 119-158 365-406 (552)
341 1vma_A Cell division protein F 97.8 3.2E-06 1.1E-10 85.4 -0.3 44 443-486 97-140 (306)
342 1pzn_A RAD51, DNA repair and r 97.8 1E-05 3.5E-10 83.3 3.4 66 444-512 125-201 (349)
343 3cr8_A Sulfate adenylyltranfer 97.7 3.7E-06 1.3E-10 91.6 -0.2 43 446-488 365-409 (552)
344 3ney_A 55 kDa erythrocyte memb 97.7 8.7E-06 3E-10 76.8 2.3 31 445-475 14-44 (197)
345 2p67_A LAO/AO transport system 97.7 2.6E-07 8.7E-12 95.1 -9.2 59 98-156 31-89 (341)
346 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 1.7E-05 5.7E-10 82.7 4.3 40 446-485 16-67 (392)
347 1kag_A SKI, shikimate kinase I 97.7 1.2E-05 4E-10 73.5 2.6 29 448-476 2-30 (173)
348 2f9l_A RAB11B, member RAS onco 97.7 2.8E-05 9.6E-10 72.7 5.0 38 452-489 7-55 (199)
349 1ega_A Protein (GTP-binding pr 97.7 3.7E-06 1.3E-10 84.8 -1.6 61 260-327 101-170 (301)
350 1kag_A SKI, shikimate kinase I 97.6 1.7E-05 5.8E-10 72.4 2.5 28 122-149 3-30 (173)
351 3qf7_A RAD50; ABC-ATPase, ATPa 97.6 2.5E-05 8.6E-10 80.9 3.9 32 439-471 13-44 (365)
352 3ice_A Transcription terminati 97.6 6.7E-06 2.3E-10 84.7 -0.6 52 96-147 132-198 (422)
353 3b9p_A CG5977-PA, isoform A; A 97.6 0.00019 6.4E-09 71.5 9.5 57 261-317 97-170 (297)
354 2wji_A Ferrous iron transport 97.6 0.00068 2.3E-08 61.1 12.4 24 125-148 5-28 (165)
355 3ice_A Transcription terminati 97.6 1.1E-05 3.6E-10 83.2 0.2 51 424-474 133-198 (422)
356 1u94_A RECA protein, recombina 97.6 0.00032 1.1E-08 72.2 11.2 28 120-147 60-87 (356)
357 3k1j_A LON protease, ATP-depen 97.6 1.8E-05 6.1E-10 87.5 1.9 57 429-485 39-96 (604)
358 2p67_A LAO/AO transport system 97.6 1.2E-06 4E-11 90.1 -7.4 51 433-483 39-89 (341)
359 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 3.9E-05 1.3E-09 69.0 3.1 28 116-144 17-44 (149)
360 1cke_A CK, MSSA, protein (cyti 97.5 1.3E-05 4.5E-10 76.6 -0.5 34 123-156 5-41 (227)
361 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.6E-05 1.9E-09 67.9 3.7 30 441-471 15-44 (149)
362 2cvh_A DNA repair and recombin 97.5 4.5E-05 1.5E-09 72.2 3.2 33 440-472 9-42 (220)
363 1cke_A CK, MSSA, protein (cyti 97.5 1.5E-05 5E-10 76.3 -0.3 35 449-483 4-41 (227)
364 2px0_A Flagellar biosynthesis 97.5 2.6E-05 9E-10 78.3 1.3 32 448-479 103-134 (296)
365 3m6a_A ATP-dependent protease 97.4 2.5E-06 8.6E-11 93.1 -7.0 59 99-158 85-143 (543)
366 2qt1_A Nicotinamide riboside k 97.4 4.4E-05 1.5E-09 72.0 2.4 30 446-475 17-46 (207)
367 3lda_A DNA repair protein RAD5 97.4 8.8E-05 3E-09 77.6 4.8 41 446-486 174-221 (400)
368 2z4s_A Chromosomal replication 97.4 0.00027 9.3E-09 74.9 8.7 41 276-316 193-237 (440)
369 4eaq_A DTMP kinase, thymidylat 97.4 4.9E-05 1.7E-09 73.4 2.5 43 112-155 12-57 (229)
370 2pez_A Bifunctional 3'-phospho 97.4 3.5E-05 1.2E-09 70.9 1.3 31 121-152 3-33 (179)
371 2pez_A Bifunctional 3'-phospho 97.4 3.3E-05 1.1E-09 71.1 1.1 37 448-485 3-41 (179)
372 3llm_A ATP-dependent RNA helic 97.4 9.1E-05 3.1E-09 71.5 3.8 25 121-145 74-98 (235)
373 2qag_A Septin-2, protein NEDD5 97.4 1.2E-05 4.1E-10 83.2 -2.7 55 94-154 14-68 (361)
374 3m6a_A ATP-dependent protease 97.4 7.5E-06 2.6E-10 89.4 -4.5 58 427-485 86-143 (543)
375 2ffh_A Protein (FFH); SRP54, s 97.3 2.4E-05 8.3E-10 82.3 -0.7 55 429-487 81-135 (425)
376 2www_A Methylmalonic aciduria 97.3 5.2E-05 1.8E-09 78.0 1.6 36 122-157 73-108 (349)
377 4eaq_A DTMP kinase, thymidylat 97.3 8.2E-05 2.8E-09 71.8 2.4 42 440-482 13-57 (229)
378 4fcw_A Chaperone protein CLPB; 97.3 0.00018 6.1E-09 72.0 4.9 31 124-154 48-78 (311)
379 4ad8_A DNA repair protein RECN 97.2 8.2E-05 2.8E-09 80.6 2.2 34 439-473 50-83 (517)
380 2i1q_A DNA repair and recombin 97.2 0.0012 4.3E-08 66.6 10.5 27 119-145 94-120 (322)
381 2dhr_A FTSH; AAA+ protein, hex 97.2 2.8E-05 9.6E-10 83.6 -2.1 59 425-487 41-99 (499)
382 2q6t_A DNAB replication FORK h 97.2 0.00081 2.8E-08 71.3 9.1 130 111-314 188-318 (444)
383 3qks_A DNA double-strand break 97.2 0.00016 5.5E-09 68.3 3.1 29 115-144 16-44 (203)
384 3cf0_A Transitional endoplasmi 97.2 0.00022 7.4E-09 71.6 4.3 29 119-147 45-73 (301)
385 2www_A Methylmalonic aciduria 97.2 9E-05 3.1E-09 76.2 1.3 36 449-484 73-108 (349)
386 1m7g_A Adenylylsulfate kinase; 97.2 5.4E-05 1.9E-09 71.8 -0.4 39 119-157 21-61 (211)
387 3cf2_A TER ATPase, transitiona 97.2 0.00072 2.5E-08 76.5 8.6 30 447-476 508-537 (806)
388 1j8m_F SRP54, signal recogniti 97.1 1.6E-05 5.3E-10 80.0 -4.6 54 100-156 77-131 (297)
389 1m2o_B GTP-binding protein SAR 97.1 0.00025 8.7E-09 65.7 4.0 34 111-145 12-45 (190)
390 1jjv_A Dephospho-COA kinase; P 97.1 0.00021 7.3E-09 67.1 3.4 22 452-473 4-25 (206)
391 1m7g_A Adenylylsulfate kinase; 97.1 7E-05 2.4E-09 71.0 -0.0 41 445-485 20-62 (211)
392 1f6b_A SAR1; gtpases, N-termin 97.1 6.8E-05 2.3E-09 70.2 -0.3 42 104-146 6-48 (198)
393 1j8m_F SRP54, signal recogniti 97.1 2.8E-05 9.6E-10 78.2 -3.4 54 429-485 79-133 (297)
394 2if2_A Dephospho-COA kinase; a 97.1 0.0002 6.7E-09 67.2 2.6 21 452-472 3-23 (204)
395 1y63_A LMAJ004144AAA protein; 97.1 0.00022 7.4E-09 66.0 2.8 32 115-146 2-33 (184)
396 3qks_A DNA double-strand break 97.1 0.0003 1E-08 66.5 3.7 29 442-471 16-44 (203)
397 1sxj_E Activator 1 40 kDa subu 97.0 0.00017 5.8E-09 73.7 2.1 36 451-486 37-73 (354)
398 2dhr_A FTSH; AAA+ protein, hex 97.0 8.6E-05 2.9E-09 79.8 -0.3 56 99-158 42-97 (499)
399 2if2_A Dephospho-COA kinase; a 97.0 0.00025 8.6E-09 66.4 2.6 21 125-145 3-23 (204)
400 2qag_A Septin-2, protein NEDD5 97.0 0.00011 3.6E-09 76.0 -0.0 50 424-479 17-66 (361)
401 3qkt_A DNA double-strand break 97.0 0.00035 1.2E-08 71.4 3.9 30 441-471 15-44 (339)
402 2gj8_A MNME, tRNA modification 97.0 0.00034 1.2E-08 63.8 3.4 27 121-147 2-28 (172)
403 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00031 1.1E-08 73.0 3.5 40 119-158 18-68 (396)
404 1mky_A Probable GTP-binding pr 97.0 0.00055 1.9E-08 72.5 5.4 37 452-488 182-230 (439)
405 2yvu_A Probable adenylyl-sulfa 97.0 0.00018 6.3E-09 66.5 1.5 35 120-154 10-44 (186)
406 2yvu_A Probable adenylyl-sulfa 97.0 0.00019 6.4E-09 66.4 1.4 36 446-481 9-44 (186)
407 2dr3_A UPF0273 protein PH0284; 97.0 0.00031 1.1E-08 67.5 3.0 41 444-484 17-58 (247)
408 1y63_A LMAJ004144AAA protein; 97.0 0.00031 1.1E-08 65.0 2.9 32 442-473 2-33 (184)
409 1mky_A Probable GTP-binding pr 97.0 0.00057 1.9E-08 72.4 5.2 35 125-159 182-228 (439)
410 1f6b_A SAR1; gtpases, N-termin 97.0 0.0002 7E-09 66.9 1.6 52 433-485 8-68 (198)
411 2v1u_A Cell division control p 96.9 0.001 3.5E-08 68.2 7.0 28 121-148 42-69 (387)
412 2gj8_A MNME, tRNA modification 96.9 0.00041 1.4E-08 63.2 3.4 27 448-474 2-28 (172)
413 3t34_A Dynamin-related protein 96.9 0.00031 1.1E-08 72.3 2.7 42 438-482 25-68 (360)
414 1m2o_B GTP-binding protein SAR 96.9 0.00071 2.4E-08 62.6 4.9 33 439-472 13-45 (190)
415 1xp8_A RECA protein, recombina 96.9 0.0061 2.1E-07 62.8 11.8 28 119-146 70-97 (366)
416 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00055 1.9E-08 71.2 3.9 40 446-485 18-68 (396)
417 2qtf_A Protein HFLX, GTP-bindi 96.8 0.00082 2.8E-08 69.4 5.1 39 450-488 178-228 (364)
418 2qor_A Guanylate kinase; phosp 96.8 0.0005 1.7E-08 64.7 3.2 30 119-148 8-37 (204)
419 2zej_A Dardarin, leucine-rich 96.8 0.00058 2E-08 62.7 3.4 27 125-151 4-30 (184)
420 3lxw_A GTPase IMAP family memb 96.8 0.0017 5.9E-08 63.0 7.0 24 125-148 23-46 (247)
421 2b8t_A Thymidine kinase; deoxy 96.8 0.003 1E-07 60.5 8.4 52 277-330 89-150 (223)
422 2wjg_A FEOB, ferrous iron tran 96.8 0.00065 2.2E-08 62.2 3.6 22 125-146 9-30 (188)
423 2qor_A Guanylate kinase; phosp 96.8 0.0006 2.1E-08 64.1 3.1 30 446-475 8-37 (204)
424 1sxj_C Activator 1 40 kDa subu 96.8 6.8E-05 2.3E-09 76.6 -3.9 48 106-153 27-76 (340)
425 3hr8_A Protein RECA; alpha and 96.7 0.00037 1.3E-08 71.6 1.5 36 446-481 57-92 (356)
426 2zej_A Dardarin, leucine-rich 96.7 0.0008 2.7E-08 61.8 3.6 24 452-475 4-27 (184)
427 2wjg_A FEOB, ferrous iron tran 96.7 0.0011 3.8E-08 60.6 4.6 22 452-473 9-30 (188)
428 1l8q_A Chromosomal replication 96.7 0.0018 6E-08 65.4 6.3 27 123-149 37-63 (324)
429 3cm0_A Adenylate kinase; ATP-b 96.7 0.0007 2.4E-08 62.2 2.8 25 448-472 2-26 (186)
430 3h4m_A Proteasome-activating n 96.7 0.0017 6E-08 63.9 5.9 27 121-147 49-75 (285)
431 2wji_A Ferrous iron transport 96.7 0.0011 3.9E-08 59.5 4.1 23 452-474 5-27 (165)
432 1njg_A DNA polymerase III subu 96.7 0.0051 1.8E-07 57.9 8.8 41 276-317 125-167 (250)
433 1q3t_A Cytidylate kinase; nucl 96.6 0.00093 3.2E-08 64.3 3.3 27 446-472 12-38 (236)
434 1sxj_C Activator 1 40 kDa subu 96.6 9.5E-05 3.3E-09 75.5 -4.0 45 434-478 28-74 (340)
435 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00019 6.4E-09 73.5 -1.8 38 111-148 10-49 (359)
436 3cm0_A Adenylate kinase; ATP-b 96.6 0.00088 3E-08 61.5 2.8 26 121-146 2-27 (186)
437 3auy_A DNA double-strand break 96.6 0.0014 4.8E-08 67.8 4.6 31 440-471 16-46 (371)
438 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00026 9E-09 72.4 -1.0 36 439-474 11-48 (359)
439 3t61_A Gluconokinase; PSI-biol 96.6 0.00086 2.9E-08 62.7 2.6 25 123-147 18-42 (202)
440 3io5_A Recombination and repai 96.6 0.0045 1.5E-07 62.2 7.9 56 262-317 92-173 (333)
441 1np6_A Molybdopterin-guanine d 96.6 0.00086 2.9E-08 61.8 2.5 35 450-484 6-43 (174)
442 1q3t_A Cytidylate kinase; nucl 96.5 0.0011 3.6E-08 63.9 3.2 27 121-147 14-40 (236)
443 3t61_A Gluconokinase; PSI-biol 96.5 0.00084 2.9E-08 62.8 2.4 25 450-474 18-42 (202)
444 1ega_A Protein (GTP-binding pr 96.5 0.00076 2.6E-08 67.7 2.1 26 449-474 7-32 (301)
445 1sxj_D Activator 1 41 kDa subu 96.4 0.00028 9.7E-09 71.7 -1.8 114 107-317 40-174 (353)
446 3r20_A Cytidylate kinase; stru 96.3 0.00074 2.5E-08 65.2 0.7 25 123-147 9-33 (233)
447 1lv7_A FTSH; alpha/beta domain 96.3 0.0011 3.9E-08 64.4 1.9 32 442-475 39-70 (257)
448 3dm5_A SRP54, signal recogniti 96.3 0.027 9.4E-07 59.2 12.6 28 122-149 99-126 (443)
449 1lv7_A FTSH; alpha/beta domain 96.3 0.001 3.5E-08 64.7 1.5 30 117-148 41-70 (257)
450 3lxx_A GTPase IMAP family memb 96.3 0.0024 8.3E-08 61.3 4.1 28 452-479 31-58 (239)
451 1np6_A Molybdopterin-guanine d 96.3 0.0011 3.6E-08 61.1 1.3 26 124-149 7-32 (174)
452 3kb2_A SPBC2 prophage-derived 96.3 0.0021 7E-08 58.0 3.2 23 125-147 3-25 (173)
453 3kb2_A SPBC2 prophage-derived 96.3 0.0021 7.2E-08 57.9 3.2 23 452-474 3-25 (173)
454 2p5t_B PEZT; postsegregational 96.2 0.0015 5.2E-08 63.6 2.3 38 447-486 29-66 (253)
455 2p5t_B PEZT; postsegregational 96.2 0.0016 5.3E-08 63.5 2.3 38 119-158 28-65 (253)
456 1q57_A DNA primase/helicase; d 96.2 0.029 9.8E-07 60.2 12.5 28 119-146 238-265 (503)
457 1qhx_A CPT, protein (chloramph 96.2 0.0027 9.1E-08 57.8 3.6 26 123-148 3-28 (178)
458 1jal_A YCHF protein; nucleotid 96.2 0.0035 1.2E-07 64.4 4.8 24 123-146 2-25 (363)
459 1qhx_A CPT, protein (chloramph 96.1 0.003 1E-07 57.4 3.7 26 450-475 3-28 (178)
460 1ypw_A Transitional endoplasmi 96.1 0.0014 4.9E-08 74.6 1.8 33 445-477 233-265 (806)
461 3ihw_A Centg3; RAS, centaurin, 96.1 0.0067 2.3E-07 55.6 6.0 28 125-152 22-54 (184)
462 3r20_A Cytidylate kinase; stru 96.1 0.0018 6E-08 62.5 2.0 24 449-472 8-31 (233)
463 3ihw_A Centg3; RAS, centaurin, 96.1 0.0082 2.8E-07 55.0 6.4 37 452-488 22-67 (184)
464 2zr9_A Protein RECA, recombina 96.1 0.0017 5.9E-08 66.6 1.9 34 446-479 57-90 (349)
465 2ius_A DNA translocase FTSK; n 96.1 0.0021 7E-08 69.1 2.6 42 442-483 159-202 (512)
466 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0016 5.5E-08 67.7 1.7 48 109-157 19-69 (392)
467 2dy1_A Elongation factor G; tr 96.1 0.0013 4.3E-08 73.5 0.8 38 444-481 3-42 (665)
468 1kht_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 57.6 3.6 25 123-147 3-27 (192)
469 1via_A Shikimate kinase; struc 96.0 0.0026 9E-08 57.9 2.8 23 452-474 6-28 (175)
470 3cmw_A Protein RECA, recombina 96.0 0.013 4.5E-07 71.0 9.4 30 120-149 729-758 (1706)
471 1vht_A Dephospho-COA kinase; s 96.0 0.0028 9.4E-08 60.0 3.0 24 449-472 3-26 (218)
472 1via_A Shikimate kinase; struc 96.0 0.0028 9.7E-08 57.7 2.8 23 125-147 6-28 (175)
473 3syl_A Protein CBBX; photosynt 96.0 0.039 1.3E-06 54.7 11.4 25 123-147 67-91 (309)
474 3lw7_A Adenylate kinase relate 96.0 0.0034 1.2E-07 56.3 3.2 19 125-143 3-21 (179)
475 1kht_A Adenylate kinase; phosp 96.0 0.004 1.4E-07 57.1 3.6 25 450-474 3-27 (192)
476 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 58.0 3.4 23 125-147 2-24 (205)
477 1g5t_A COB(I)alamin adenosyltr 96.0 0.02 6.9E-07 53.4 8.4 69 265-333 106-181 (196)
478 2ze6_A Isopentenyl transferase 96.0 0.0031 1.1E-07 61.5 3.0 23 125-147 3-25 (253)
479 2ze6_A Isopentenyl transferase 96.0 0.0031 1.1E-07 61.5 3.0 23 452-474 3-25 (253)
480 3lw7_A Adenylate kinase relate 95.9 0.0037 1.3E-07 56.1 3.3 19 452-470 3-21 (179)
481 1gtv_A TMK, thymidylate kinase 95.9 0.0011 3.6E-08 62.4 -0.4 26 452-477 2-27 (214)
482 3bgw_A DNAB-like replicative h 95.9 0.0068 2.3E-07 64.2 5.8 53 260-314 263-318 (444)
483 1vht_A Dephospho-COA kinase; s 95.9 0.0036 1.2E-07 59.1 3.2 23 123-145 4-26 (218)
484 2jaq_A Deoxyguanosine kinase; 95.9 0.0039 1.3E-07 57.8 3.4 23 452-474 2-24 (205)
485 1xx6_A Thymidine kinase; NESG, 95.9 0.022 7.5E-07 53.0 8.4 53 276-330 80-142 (191)
486 3trf_A Shikimate kinase, SK; a 95.9 0.0045 1.5E-07 56.7 3.6 26 122-147 4-29 (185)
487 1gtv_A TMK, thymidylate kinase 95.9 0.0012 4E-08 62.1 -0.6 25 125-149 2-26 (214)
488 2rhm_A Putative kinase; P-loop 95.8 0.0032 1.1E-07 58.0 2.3 27 121-147 3-29 (193)
489 2rhm_A Putative kinase; P-loop 95.8 0.0034 1.1E-07 57.8 2.5 26 448-473 3-28 (193)
490 3kl4_A SRP54, signal recogniti 95.8 0.0018 6E-08 68.3 0.6 36 449-484 96-131 (433)
491 3k53_A Ferrous iron transport 95.8 0.0039 1.3E-07 61.2 3.0 44 286-329 144-191 (271)
492 3trf_A Shikimate kinase, SK; a 95.8 0.0054 1.8E-07 56.1 3.6 25 449-473 4-28 (185)
493 1uf9_A TT1252 protein; P-loop, 95.8 0.0044 1.5E-07 57.5 3.0 23 451-473 9-31 (203)
494 1ly1_A Polynucleotide kinase; 95.7 0.0051 1.8E-07 55.7 3.4 22 124-145 3-24 (181)
495 2v54_A DTMP kinase, thymidylat 95.7 0.0057 1.9E-07 56.8 3.7 26 122-147 3-28 (204)
496 2v54_A DTMP kinase, thymidylat 95.7 0.0049 1.7E-07 57.2 3.3 27 448-474 2-28 (204)
497 3iij_A Coilin-interacting nucl 95.7 0.0048 1.6E-07 56.3 3.1 26 121-146 9-34 (180)
498 1ex7_A Guanylate kinase; subst 95.7 0.0049 1.7E-07 57.3 3.1 21 453-473 4-24 (186)
499 1uf9_A TT1252 protein; P-loop, 95.7 0.0046 1.6E-07 57.3 3.0 24 123-146 8-31 (203)
500 1ex7_A Guanylate kinase; subst 95.7 0.005 1.7E-07 57.2 3.1 22 126-147 4-25 (186)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.1e-61 Score=553.35 Aligned_cols=302 Identities=30% Similarity=0.549 Sum_probs=241.0
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHC-CCCCCceeEEEcCCCceEEEEeccc-ccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~~~~~~i~~v~Q~~-~~~ 173 (554)
..|...|++++|+++.+|+|+||+|++|++++|+|+||||||||+|+|+| .+ .|. .. ....+++|++|++ .++
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~-~~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PT-QEECRTVYVEHDIDGTH 508 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CC-TTTSCEEETTCCCCCCC
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-cc-ccceeEEEEcccccccc
Confidence 34777799999999999999999999999999999999999999999994 22 110 00 0123578999985 566
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+++... ... . ..++.++|+.+||.....
T Consensus 509 ~~ltv~e~l~~~-------------------------------------------~~~--~-~~~v~~~L~~lgL~~~~~ 542 (986)
T 2iw3_A 509 SDTSVLDFVFES-------------------------------------------GVG--T-KEAIKDKLIEFGFTDEMI 542 (986)
T ss_dssp TTSBHHHHHHTT-------------------------------------------CSS--C-HHHHHHHHHHTTCCHHHH
T ss_pred cCCcHHHHHHHh-------------------------------------------hcC--H-HHHHHHHHHHcCCChhhh
Confidence 788999887420 000 1 456778899999965667
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
++++.+|||||||||+|||||+.+|+||||||||||||+.++.+|.++|++.|+|||+||||++++..+||+|++|++|+
T Consensus 543 ~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp HSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 89999999999999999999999999999999999999999999999998788999999999999999999999999999
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceee
Q 008771 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (554)
Q Consensus 334 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (554)
+..|.|+++++........ ... . +. .. ...+.
T Consensus 623 iv~~~G~~~e~~~~~~~~~----------------------~~~---~-------------l~-----~~-----~~~~~ 654 (986)
T 2iw3_A 623 LRKYKGNFTEFVKKCPAAK----------------------AYE---E-------------LS-----NT-----DLEFK 654 (986)
T ss_dssp EEEEESCHHHHHHHCGGGG----------------------GSS---S-------------TT-----TC-----CCCCC
T ss_pred eecCCCCHHHHHhhhHHHH----------------------HHH---h-------------hh-----hh-----hhhcc
Confidence 8778999987754211000 000 0 00 00 00011
Q ss_pred ccC------CCCCCCceEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 414 FPE------RGRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 414 ~~~------~~~~~~~~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
++. ....++++|+++|++|.|++ +.+|+++||+|.+||++||+||||||||||+|+|+|+++|++|+|++++
T Consensus 655 ~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 655 FPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp CCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred ccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 111 01235678999999999975 5789999999999999999999999999999999999999999999975
Q ss_pred ceeeEEEEeccc
Q 008771 486 HNVLPNYFEQNQ 497 (554)
Q Consensus 486 ~~~~~~y~~Q~~ 497 (554)
+..++|++|++
T Consensus 735 -~~~I~yv~Q~~ 745 (986)
T 2iw3_A 735 -NCRIAYIKQHA 745 (986)
T ss_dssp -TCCEEEECHHH
T ss_pred -ccceEeeccch
Confidence 45689999975
No 2
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-61 Score=530.90 Aligned_cols=357 Identities=24% Similarity=0.307 Sum_probs=265.0
Q ss_pred EEE-EeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE---------EEcCCC------
Q 008771 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKSN------ 160 (554)
Q Consensus 98 i~~-~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I---------~~~~~~------ 160 (554)
.++ +||+|+|+++ .+|+++| +|++||++||+|+||||||||+|+|+|+++|++|++ .++|..
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 6999999876 4999999 999999999999999999999999999999999995 233321
Q ss_pred ------ceEEEEecccccccC---ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 161 ------MKIAFLSQEFEVSMS---RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 161 ------~~i~~v~Q~~~~~~~---~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
..+++++|.....+. .|+.+++..
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----------------------------------------------- 132 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----------------------------------------------- 132 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH-----------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh-----------------------------------------------
Confidence 357888887654332 266554310
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCe
Q 008771 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~t 308 (554)
.....++.++|+.+|+. ...++++.+|||||||||+||+||+.+|+|||||||||+||+.++.++.++|++ .|+|
T Consensus 133 -~~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 133 -ADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp -HCSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred -hhHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 00113467788999996 467899999999999999999999999999999999999999999888887743 5899
Q ss_pred EEEEecCHHHHHhhcceEEEeeCCee--eeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhH
Q 008771 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l~~g~~--~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (554)
||+||||++++..+||+|++|+++.. ..+..++.... .+ ..........
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~------- 261 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------------------GI---NEFLRGYLKD------- 261 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH-------------------HH---HHHHHTEETT-------
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH-------------------HH---HHHhhhccch-------
Confidence 99999999999999999999985421 12333333100 00 0000000000
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccCCC--CCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHH
Q 008771 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (554)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKS 464 (554)
.. .... .....+.++... ..++++++++|+++.|++. .|+.+||+|++||++||+||||||||
T Consensus 262 -----------~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 262 -----------EN-VRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp -----------TT-EECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred -----------hh-hccc--ccccccccCCcccccCCCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHH
Confidence 00 0000 000011111111 1356789999999999774 68999999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhh-ccc-CCHHHHHHHHhhCCCChhhhccccC
Q 008771 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (554)
Q Consensus 465 TLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (554)
||+++|+|+++|++|+|.+. ..++|++|++. ..+..||.+++... ... .....++.+|+.+++. +..++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHhCCCCCCCeEEEEC---ceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChh
Confidence 99999999999999999873 45899999863 45778998887643 111 1245678899999995 67899999
Q ss_pred cCChhhhhcccC
Q 008771 543 LLSGGEKIILLY 554 (554)
Q Consensus 543 ~LSGGek~Rl~l 554 (554)
.|||||||||+|
T Consensus 401 ~LSGGe~qrv~l 412 (538)
T 1yqt_A 401 ELSGGELQRVAI 412 (538)
T ss_dssp GCCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 999999999975
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.3e-61 Score=533.78 Aligned_cols=358 Identities=24% Similarity=0.320 Sum_probs=267.7
Q ss_pred cEEE--------EeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE---------EEcC
Q 008771 97 GVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158 (554)
Q Consensus 97 ~i~~--------~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I---------~~~~ 158 (554)
+|++ +||+++|++. .+|+++| +|++||++||+|+||||||||+|+|+|+++|++|++ .+.|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 8999999876 4999999 999999999999999999999999999999999995 2333
Q ss_pred CC------------ceEEEEeccccccc---CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 008771 159 SN------------MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (554)
Q Consensus 159 ~~------------~~i~~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (554)
.. ..+++++|.....+ ..||.+++...
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------------------------------------- 203 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------------------------------------- 203 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--------------------------------------
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh--------------------------------------
Confidence 21 24788888754332 23776664210
Q ss_pred HHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
....++.++|+.+||. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+
T Consensus 204 ----------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 204 ----------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp ----------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0113466788899996 56799999999999999999999999999999999999999999988888775
Q ss_pred c---CCCeEEEEecCHHHHHhhcceEEEeeCCee--eeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008771 304 K---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (554)
Q Consensus 304 ~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~--~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (554)
+ .|.|||+||||++++..+||+|++|+++.. ..+...+.... .+ .........
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~-------------------~i---~~~~~~~~~ 330 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN-------------------GI---NEFLQGYLK 330 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHH-------------------HH---HHHHHTEET
T ss_pred HHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHH-------------------HH---HHHHhhcch
Confidence 3 489999999999999999999999986421 11222222100 00 000000000
Q ss_pred CCCchhhHHHHHHHHHHHHhhhhccccccccceeeccCCC--CCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEE
Q 008771 379 GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAII 456 (554)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIv 456 (554)
. +. .. .......+.++... ..++++++++|+++.|++. .|+.+||+|.+||++||+
T Consensus 331 ~------------------~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~ 388 (607)
T 3bk7_A 331 D------------------EN-VR--FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIV 388 (607)
T ss_dssp T------------------TT-EE--CCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEE
T ss_pred h------------------hh-hh--ccccccccccCCCcccccCceEEEEeceEEEecce-EEEecccccCCCCEEEEE
Confidence 0 00 00 00000111111111 1356789999999999864 689999999999999999
Q ss_pred CCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhh-ccc-CCHHHHHHHHhhCCCCh
Q 008771 457 GPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKA 534 (554)
Q Consensus 457 G~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~L~~~~l~~ 534 (554)
||||||||||+++|+|+++|++|+|.+. ..++|++|++. +.++.||.+++... ... .....+..+|+.+++.
T Consensus 389 G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~- 462 (607)
T 3bk7_A 389 GPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII- 462 (607)
T ss_dssp CCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-
T ss_pred CCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-
Confidence 9999999999999999999999999773 45799999863 45778998887653 111 1234578899999996
Q ss_pred hhhccccCcCChhhhhcccC
Q 008771 535 DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 535 ~~~~~~~~~LSGGek~Rl~l 554 (554)
+..++++..|||||||||+|
T Consensus 463 ~~~~~~~~~LSGGe~QRv~i 482 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAI 482 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHH
Confidence 57899999999999999975
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.7e-59 Score=559.54 Aligned_cols=258 Identities=24% Similarity=0.353 Sum_probs=189.5
Q ss_pred HhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCCE
Q 008771 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~ 125 (554)
+......+..++.+..+++|+++..+.+++..... .....+....+.|+++||+|+|++ .++|+||||+|++||+
T Consensus 341 ~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~ 418 (1284)
T 3g5u_A 341 VGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFS--KSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQT 418 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCC--SSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccc--ccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCE
Confidence 33444555668888899999988776543321110 001111123456999999999964 4699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||||+||||||||+++|+|+++|++|+|.++|.+. .||||+|++.++. .||+||+..+.... .
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~~~-~---- 492 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDV-T---- 492 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCSSC-C----
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCC-ccHHHHHhcCCCCC-C----
Confidence 999999999999999999999999999999998643 4999999998864 59999997532100 0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+.+. ..+... .....+..+-. |++ ........+|||||||||+|||||+
T Consensus 493 ~~~~~------------------------~~~~~~---~~~~~i~~l~~--g~~-t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 493 MDEIE------------------------KAVKEA---NAYDFIMKLPH--QFD-TLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHHHH------------------------HHHHHT---TCHHHHHHSTT--GGG-CCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHH------------------------HHHHHh---CcHHHHHhccc--ccc-ccccCCCCccCHHHHHHHHHHHHHh
Confidence 00000 000000 01111111111 221 1234556799999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+|+|||||||||+||+.+..++.+.++. .|+|+|+||||++++.. ||+|++|++|++ ...|+++++..
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i-~~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVI-VEQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCC-CCEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHh
Confidence 99999999999999999999998887753 58999999999999976 999999999987 56788877654
No 5
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.9e-58 Score=548.27 Aligned_cols=260 Identities=20% Similarity=0.304 Sum_probs=191.7
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+......+..++.+..+++|+++..+.++...... .....+......|+++||+|+|++ .++|+|+||+|++|+
T Consensus 368 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~ 445 (1321)
T 4f4c_A 368 ALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSS--KAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ 445 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSS--SCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--cccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCc
Confidence 445555566778889999999988765543322111 111112233456999999999963 579999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
++||||++|||||||+++|.|+++|++|+|.++|.+. .|+||+|++.+ ++.||+||+..+.... .
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~~~~-~--- 520 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGKEGI-T--- 520 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTCTTC-C---
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCccee-eCCchhHHHhhhcccc-h---
Confidence 9999999999999999999999999999999998643 59999999988 6779999997542100 0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
.+++.+ .+.... ++..+..+-+ |++... ...-..|||||||||+||||+
T Consensus 521 -~~~v~~------------------------a~~~a~---l~~~i~~lp~--G~~T~v-Ge~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 521 -REEMVA------------------------ACKMAN---AEKFIKTLPN--GYNTLV-GDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp -HHHHHH------------------------HHHHTT---CHHHHHHSTT--TTSSEE-SSSSCCCCHHHHHHHHHHHHH
T ss_pred -HHHHHH------------------------HHHHcc---chhHHHcCCC--CCccEe-cCCCCCCCHHHHHHHHHHHHH
Confidence 000000 111000 1111221111 333222 223468999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+.+|+|||||||||+||+++...+.+.|.+ .|+|+|+|||+++.+. .||+|++|++|++ ...|++++.+..
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~i-ve~Gth~eL~~~ 642 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQV-VEVGDHRALMAQ 642 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEE-EEEECHHHHHTT
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCee-eccCCHHHHHHh
Confidence 999999999999999999998888887754 5899999999999996 5999999999998 456777776543
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-56 Score=490.16 Aligned_cols=355 Identities=23% Similarity=0.274 Sum_probs=251.5
Q ss_pred EeEEEEeCCeeeEEceeEEEE-CCCEEEEECCCCccHHHHHHHHHCCCCCCceeE-----------EEcCCC--------
Q 008771 101 ENISKSYKGVTVLKDVTWEVK-KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-----------IKAKSN-------- 160 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~-~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I-----------~~~~~~-------- 160 (554)
++.+.+|+.+. |+-..|.+. +||++|||||||||||||+|+|+|+++|++|+| .+.|..
T Consensus 3 ~~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 35678897442 444455555 899999999999999999999999999999998 344332
Q ss_pred ----ceEEEEecccccc---cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 161 ----MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~---~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
..+....|..... +..++.+++.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~------------------------------------------------~ 113 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTK------------------------------------------------I 113 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHH------------------------------------------------H
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhc------------------------------------------------c
Confidence 1244444443221 12244433210 0
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIi 311 (554)
....++.++++.+|+. ...++++.+|||||||||+|||||+.+|++||||||||+||+.++.++.++|++ .|+|||+
T Consensus 114 ~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~ 192 (538)
T 3ozx_A 114 DERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192 (538)
T ss_dssp CCSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hhHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0112456778888985 567899999999999999999999999999999999999999999998887653 3899999
Q ss_pred EecCHHHHHhhcceEEEeeCCeee--eccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHH
Q 008771 312 ISHDRAFLDQLCTKIVETEMGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAE 389 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l~~g~~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (554)
||||++++..+||+|++|++|... .+...+..- . . ..+.+.........
T Consensus 193 vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~----~-----~-------------~~~~~~g~~~~~~~------- 243 (538)
T 3ozx_A 193 VDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR----V-----G-------------INNFLKGYLPAENM------- 243 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH----H-----H-------------HHHHHHTEETTTTE-------
T ss_pred EEeChHHHHhhCCEEEEecCCcccccccchhhhHH----H-----H-------------HHHHHhhhchhhhh-------
Confidence 999999999999999999865321 122222200 0 0 00001000000000
Q ss_pred HHHHHHHHhhhhccccccccceeecc--C---CCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHH
Q 008771 390 KKLERLQEEEQIEKPFQRKQMKIRFP--E---RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (554)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKS 464 (554)
..++. ...+... . ....++++++++++++.|++. .|..+||+|++||++||+||||||||
T Consensus 244 -----------~~r~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKS 308 (538)
T 3ozx_A 244 -----------KIRPD---EIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKT 308 (538)
T ss_dssp -----------ECSSS---CCCCSCC----------CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred -----------hccch---hhhccccccccccccccccceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHH
Confidence 00000 0000000 0 012356789999999999874 57788999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhccc---CCHHHHHHHHhhCCCChhhhcccc
Q 008771 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKV 541 (554)
Q Consensus 465 TLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~ 541 (554)
||+++|+|+++|++|+|.+++. .++|++|+.. ..+..||.+++...... .....+..+++.+++. +..++++
T Consensus 309 TLl~~l~Gl~~p~~G~i~~~~~--~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 383 (538)
T 3ozx_A 309 TFARILVGEITADEGSVTPEKQ--ILSYKPQRIF--PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNV 383 (538)
T ss_dssp HHHHHHTTSSCCSBCCEESSCC--CEEEECSSCC--CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBG
T ss_pred HHHHHHhCCCCCCCcEEEECCe--eeEeechhcc--cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCCh
Confidence 9999999999999999998764 4689999753 34678999998764321 1234578899999995 5789999
Q ss_pred CcCChhhhhcccC
Q 008771 542 SLLSGGEKIILLY 554 (554)
Q Consensus 542 ~~LSGGek~Rl~l 554 (554)
..|||||||||+|
T Consensus 384 ~~LSGGq~QRv~i 396 (538)
T 3ozx_A 384 NDLSGGELQKLYI 396 (538)
T ss_dssp GGCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHH
Confidence 9999999999975
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-54 Score=477.54 Aligned_cols=379 Identities=21% Similarity=0.311 Sum_probs=241.5
Q ss_pred eEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-eEEEEecccccccCccHH
Q 008771 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 102 ~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-~i~~v~Q~~~~~~~~tv~ 179 (554)
|++++|+.. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+|....... .+++ +....+.
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~-------~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY-------FRGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHH-------TTTSTHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhhe-------ecChhhh
Confidence 568889754 4677777 6899999999999999999999999999999999873110000 0000 0000010
Q ss_pred HHHHHhhHHHHHH---HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 180 EEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 180 e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
..+.......... ......+.. ............+ . ........++.++++.+|+. ...+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~l-------~----~~~~~~~~~~~~~l~~~gl~-~~~~~~ 218 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPR---AIKGPVQKVGELL-------K----LRMEKSPEDVKRYIKILQLE-NVLKRD 218 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHH---HCSSSSSHHHHHH-------H----HHCCSCHHHHHHHHHHHTCT-GGGGSC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhh---hhcchhhHHHHHH-------h----hhhhhHHHHHHHHHHHcCCc-chhCCC
Confidence 0000000000000 000000000 0000000000000 0 00122346788899999996 567999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
+.+|||||||||+||+||+.+|++|||||||++||+.++.++.++++ +.|.|||+||||++++..+||+|++|++|.
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999999988888764 458999999999999999999999998764
Q ss_pred ee--eccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccce
Q 008771 334 SR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411 (554)
Q Consensus 334 ~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 411 (554)
.. .+..+++. ++ . .......... .+.. .+......
T Consensus 299 ~~~~~~~~~~~~----~~-----~-------------~~~~~~~~~~------------------~~~~---~~~~~~~~ 335 (608)
T 3j16_B 299 SVYGVVTLPASV----RE-----G-------------INIFLDGHIP------------------AENL---RFRTEALQ 335 (608)
T ss_dssp TTEEEECCCEEH----HH-----H-------------HHHHHHTEET------------------TTTE---ECSSSCCC
T ss_pred cccceecCchhH----HH-----H-------------HHHhhccccc------------------hhhh---cccccccc
Confidence 21 11111110 00 0 0000000000 0000 00000001
Q ss_pred eeccCCCCCCCceEEEeeeeEecCC-ccceeceEEEEecC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 412 IRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~G-----e~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
+.... ......+...++++.|++ ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+.. .
T Consensus 336 ~~~~~--~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~- 411 (608)
T 3j16_B 336 FRIAD--ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-P- 411 (608)
T ss_dssp CCCSS--SSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-C-
T ss_pred ccccc--cccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-c-
Confidence 11100 011112222567788875 34789999999999 88999999999999999999999999999742 2
Q ss_pred ceeeEEEEecccccCCCCCCCHHHHHHhhccc--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 486 ~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
...++|++|+.. ..+..||.+++...... .....+..++..+++. +..++++.+|||||||||+|
T Consensus 412 -~~~i~~~~q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~i 478 (608)
T 3j16_B 412 -KLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAI 478 (608)
T ss_dssp -SCCEEEECSSCC--CCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHH
T ss_pred -CCcEEEeccccc--ccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHH
Confidence 335789999753 34567999987643221 2345677889999996 57899999999999999975
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.1e-52 Score=470.74 Aligned_cols=275 Identities=19% Similarity=0.294 Sum_probs=172.4
Q ss_pred CeeeEEceeEEEECCCEEEEECCCCccHHHHH---------------------HHHHCCCCCCcee-------EEEcCCC
Q 008771 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGN-------VIKAKSN 160 (554)
Q Consensus 109 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl---------------------k~i~G~~~p~~G~-------I~~~~~~ 160 (554)
...+|+||||+|++||++|||||||||||||+ +++.|+..|+.|. |.+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 9999999998554 4444322
Q ss_pred ------ceEEEEecccccc-------------------cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHH
Q 008771 161 ------MKIAFLSQEFEVS-------------------MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (554)
Q Consensus 161 ------~~i~~v~Q~~~~~-------------------~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (554)
..++|++|.+.++ +.+||.+|+...... ...
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~~---------------------- 165 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGL--ELT---------------------- 165 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhcc--ccc----------------------
Confidence 2355555544321 234555554321000 000
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHH
Q 008771 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (554)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~ 293 (554)
.. ..........++..+ ..+++.+||.....++++.+|||||||||+|||||+.+|+ +|||||||++||+.
T Consensus 166 ---~~---~~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 166 ---EK---EAQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ---hh---hhHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00 000000000111122 2468889997656789999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008771 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (554)
Q Consensus 294 ~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (554)
++.+|.++|+ +.|.|||+||||++++. .||+|++| ++|++ .+.|++.++.......
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i-~~~g~~~~~~~~~~~~------------- 303 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNSL------------- 303 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSE-EEEECHHHHHTCTTCH-------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEE-EEecCHHHHhcCchhH-------------
Confidence 9999988764 46899999999999886 59999999 77776 5667766543210000
Q ss_pred HHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeeccC-CCCCCCceEEEeeeeEecCCccceece
Q 008771 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRA 443 (554)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y~~~~~l~~v 443 (554)
... .+. .... ...+. ........+++.+.. ..++++|
T Consensus 304 --------~~~------------------~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~L~~v 341 (670)
T 3ux8_A 304 --------TGQ------------------YLS-----GKKF------IPIPAERRRPDGRWLEVVGAR-----EHNLKNV 341 (670)
T ss_dssp --------HHH------------------HHT-----TSSC------CCCCSSCCCCCSCEEEEEEEC-----STTCCSE
T ss_pred --------HHH------------------Hhc-----cccc------cccccccccccccceeecCcc-----ccccccc
Confidence 000 000 0000 00000 011223455555543 3579999
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
||+|.+||++||+||||||||||+++|+
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 9999999999999999999999998754
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.4e-49 Score=407.53 Aligned_cols=212 Identities=25% Similarity=0.420 Sum_probs=182.7
Q ss_pred CCCccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------
Q 008771 93 SISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------- 160 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------- 160 (554)
..+++|+++||+|+|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34568999999999963 469999999999999999999999999999999999999999999999853
Q ss_pred -----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
..||||||++.+++.+||.+|+..+... ......+.
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---------------------------------------~~~~~~~~ 140 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEV 140 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------SCCCHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHH
Confidence 2599999999999999999998643110 01122345
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEE
Q 008771 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVI 311 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIi 311 (554)
.+++.++|+.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++|+ +.|.|||+
T Consensus 141 ~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 141 KRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp HHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 67788999999996 56799999999999999999999999999999999999999999999888774 35899999
Q ss_pred EecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||||++++.++||||++|++|++ ...|+..+..
T Consensus 220 vTHdl~~~~~~aDrv~vl~~G~i-v~~g~~~ev~ 252 (366)
T 3tui_C 220 ITHEMDVVKRICDCVAVISNGEL-IEQDTVSEVF 252 (366)
T ss_dssp EESCHHHHHHHCSEEEEEETTEE-EECCBHHHHH
T ss_pred EecCHHHHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 99999999999999999999998 4667766554
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3e-49 Score=408.65 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=182.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------eE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~i 163 (554)
++|+++||+|+|++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 369999999999999999999999999999999999999999999999999999999999987532 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|||||++.+++.+||.||+..+... ......+..+++.+++
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l 123 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGN---------------------------------------GKGRTAQERQRIEAML 123 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTT---------------------------------------SSCCSHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHH---------------------------------------cCCChHHHHHHHHHHH
Confidence 9999999999999999998754210 0112234456788999
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l 319 (554)
+.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.+ ++.|.|+|+||||++++
T Consensus 124 ~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 124 ELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp HHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred HHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999996 5789999999999999999999999999999999999999999988876543 45799999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
..+||||++|++|++ ...|+..+..
T Consensus 203 ~~~aDri~vl~~G~i-~~~g~~~el~ 227 (359)
T 3fvq_A 203 LQYADRIAVMKQGRI-LQTASPHELY 227 (359)
T ss_dssp HHHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHHCCEEEEEECCEE-EEEeCHHHHH
Confidence 999999999999998 4567766544
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.5e-48 Score=389.48 Aligned_cols=211 Identities=24% Similarity=0.408 Sum_probs=180.6
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------e
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~ 162 (554)
.++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 22 ~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred hheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 3479999999999988999999999999999999999999999999999999999999999988432 4
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+||||++.+++.+||.||+...... . .........+++.++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~--------------~------------------------~~~~~~~~~~~~~~~ 143 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMK--------------V------------------------RKWPREKAEAKAMEL 143 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHH--------------T------------------------SCCCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHH--------------H------------------------cCCCHHHHHHHHHHH
Confidence 99999999888889999998532100 0 001112234567888
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++
T Consensus 144 l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 144 LDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 9999995 567899999999999999999999999999999999999999999998887743 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
..+||+|++|++|++. +.|+.+++.
T Consensus 223 ~~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 223 REVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp HHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999974 567766554
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-48 Score=406.62 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
.|+++||+|+|++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... ......+..+++.++++.+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQL 123 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998643210 012233456788999999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp G-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred c-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 6 57799999999999999999999999999999999999999999988887764 349999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++|++|++. ..|+..+..
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 203 KIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEeCHHHHH
Confidence 99999999984 556665543
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-48 Score=392.95 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=180.4
Q ss_pred ccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------e
Q 008771 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~ 162 (554)
++|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 46999999999975 4699999999999999999999999999999999999999999999998543 5
Q ss_pred EEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 163 i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
||||||++. .++..||.+|+..... . ......+..+++.+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~-----------------~----------------------~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAV-----------------N----------------------MKLPEDEIRKRVDN 126 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHH-----------------T----------------------SCCCHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHH-----------------H----------------------cCCCHHHHHHHHHH
Confidence 999999984 4457899999864210 0 01122344567888
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|||+||||++
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 99999995 56799999999999999999999999999999999999999999998888764 34899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++..+||+|++|++|++ .+.|+..++..
T Consensus 206 ~~~~~~drv~~l~~G~i-~~~g~~~~~~~ 233 (275)
T 3gfo_A 206 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 233 (275)
T ss_dssp SGGGGCSEEEEEETTEE-EEEECHHHHTH
T ss_pred HHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 99999999999999997 56788777654
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2e-48 Score=380.34 Aligned_cols=199 Identities=28% Similarity=0.405 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------c
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~ 161 (554)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 46999999999998899999999999999999999999999999999999999999999998743 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|+||++.+++..||.||+...... .........+++.+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 123 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLK---------------------------------------MGKPKKEAKERGEY 123 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 499999999888889999998532100 00111123456788
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+++++ .|.|||+||||+++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 124 LLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 89999996 467899999999999999999999999999999999999999999998887643 48999999999999
Q ss_pred HHhhcceEEEeeCCeee
Q 008771 319 LDQLCTKIVETEMGVSR 335 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~ 335 (554)
+ .+||+|++|++|++.
T Consensus 203 ~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 203 A-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp H-TTSSEEEEEETTEEE
T ss_pred H-HhCCEEEEEECCEEE
Confidence 8 799999999999874
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-48 Score=388.53 Aligned_cols=209 Identities=26% Similarity=0.452 Sum_probs=179.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------------- 161 (554)
+|+++||+++|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 69999999999988999999999999999999999999999999999999999999999987432
Q ss_pred --------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 162 --------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
.||||||++.+++.+||.+|+...... . ......
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~--------------~------------------------~~~~~~ 127 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------V------------------------LGLSKH 127 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------T------------------------TCCCHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH--------------h------------------------cCCCHH
Confidence 399999999888889999998532100 0 001112
Q ss_pred cHHHHHHHHhhhcCCCccc-cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeE
Q 008771 234 TLDAKVSKLMPELGFTADD-GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM 309 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tv 309 (554)
...+++.++++.+|+. +. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.||
T Consensus 128 ~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 128 DARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 2345678899999996 45 7899999999999999999999999999999999999999999998887643 48999
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+||||++++..+||+|++|++|++. ..|+..++.
T Consensus 207 i~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 241 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF 241 (262)
T ss_dssp EEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999974 567776654
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.9e-48 Score=383.15 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=171.7
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------- 161 (554)
+|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999999999999998431
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.||||||++.+++.+||.||+..+... ... ......+..++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~---------------~~~---------------------~~~~~~~~~~~ 124 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KYR---------------------GAMSGEERRKR 124 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CSS---------------------SCCCHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHh---------------hhc---------------------cCCCHHHHHHH
Confidence 499999999998899999998643100 000 00112233456
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisH 314 (554)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+++++ .|.|||+|||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 788899999975455899999999999999999999999999999999999999999999888753 3899999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|++.+ .+||+|++|++|++.
T Consensus 205 d~~~~-~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 205 DINVA-RFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHH-TTSSEEEEEETTEEE
T ss_pred CHHHH-HhCCEEEEEECCEEE
Confidence 99965 789999999999974
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-48 Score=383.03 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=179.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAF 165 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~ 165 (554)
.++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|||
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 3569999999999988999999999999999999999999999999999999999999999988532 4999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++..||.||+..... + .........+++.++++.
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAG---------------F------------------------YASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHH---------------H------------------------HCCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHH---------------H------------------------cCCChHHHHHHHHHHHHH
Confidence 9999988888999999853210 0 001111234567788999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++..+
T Consensus 134 ~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT
T ss_pred CCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence 9996 467889999999999999999999999999999999999999999998887743 589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. +.|+..++.
T Consensus 213 ~d~v~~l~~G~i~-~~g~~~~~~ 234 (256)
T 1vpl_A 213 CDRIALIHNGTIV-ETGTVEELK 234 (256)
T ss_dssp CSEEEEEETTEEE-EEEEHHHHH
T ss_pred CCEEEEEECCEEE-EecCHHHHH
Confidence 9999999999974 567666543
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.9e-48 Score=385.20 Aligned_cols=206 Identities=23% Similarity=0.307 Sum_probs=180.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
++|+++||++.|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 469999999999999999999999999999999999999999999999999999999999998542 4999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..||.||+..... ........+++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~-----------------------------------------~~~~~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRA-----------------------------------------PYGGSQDRQALQQVMAQ 128 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGT-----------------------------------------TSCSTTHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhh-----------------------------------------hcCcHHHHHHHHHHHHH
Confidence 9999988888999999864310 00122345678888999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHcc------CCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
+|+. ...++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|++ .+.|||+||||
T Consensus 129 ~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9996 46789999999999999999999999 9999999999999999999998887753 35799999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||+|++|++|++. +.|+..++
T Consensus 208 l~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 235 (266)
T 4g1u_C 208 LNLAALYADRIMLLAQGKLV-ACGTPEEV 235 (266)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999984 56776554
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.8e-48 Score=387.06 Aligned_cols=217 Identities=20% Similarity=0.246 Sum_probs=179.5
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 469999999999998999999999999999999999999999999999999999999999987431 499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHh---CCcccHHHHHHH
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA---VNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 241 (554)
||||++.+++..||.||+...... .... ... ..+.. ........++.+
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~-----------------~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~ 136 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEIC-----------------PGES--PLN----------SLFYKKWIPKEEEMVEKAFK 136 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTS-----------------TTSC--HHH----------HHHHCSSCCCCHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhh-----------------hccC--ccc----------ccccccccCCHHHHHHHHHH
Confidence 999999888889999998643100 0000 000 00000 011223456888
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||+++
T Consensus 137 ~l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 137 ILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred HHHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 99999996 567899999999999999999999999999999999999999999999888743 48999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
+..+||+|++|++|++. +.|+..+
T Consensus 216 ~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 216 VLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp TGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHhCCEEEEEECCEEE-EEeCHHH
Confidence 99999999999999974 4566655
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-48 Score=379.70 Aligned_cols=207 Identities=22% Similarity=0.324 Sum_probs=176.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 469999999999988999999999999999999999999999999999999999999999988432 399
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+++.+||.||+..... . ........+++.++++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~-----------------~-----------------------~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAY-----------------N-----------------------RKDKEGIKRDLEWIFS 124 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGT-----------------T-----------------------CCCSSHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhh-----------------c-----------------------CCCHHHHHHHHHHHHH
Confidence 99999988888999999864210 0 0011223445667777
Q ss_pred hcC-CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 245 ELG-FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lg-l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
.++ +. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 774 74 456888999999999999999999999999999999999999999999888743 5899999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.+||+|++|++|++. +.|+..++
T Consensus 204 ~~~d~v~~l~~G~i~-~~g~~~~~ 226 (240)
T 1ji0_A 204 KVAHYGYVLETGQIV-LEGKASEL 226 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHH
Confidence 999999999999974 55666554
No 21
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1e-47 Score=397.35 Aligned_cols=210 Identities=27% Similarity=0.450 Sum_probs=182.3
Q ss_pred CccEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEE
Q 008771 95 SSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (554)
Q Consensus 95 ~~~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~ 165 (554)
+++|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|||
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4579999999999 88889999999999999999999999999999999999999999999998843 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|||++.+++.+||.||+..+... ......+.++++.++++.
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 132 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLRE---------------------------------------KRVPKDEMDARVRELLRF 132 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 011222345678889999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..
T Consensus 133 ~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 133 MRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp TTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 9996 567999999999999999999999999999999999999999999988887643 48999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||+|++|++|++. ..|+..++.
T Consensus 212 ~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 212 VADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp HCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999974 557766543
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.9e-47 Score=396.69 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=181.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 5899999999998889999999999999999999999999999999999999999999998843 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... ......+..+++.++++.+||
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLEL---------------------------------------RKAPREEIDKKVREVAKMLHI 123 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998643210 011222345678889999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 124 D-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp T-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999988887643 48999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. ..|+..+..
T Consensus 203 ri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 203 RIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 557766544
No 23
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-47 Score=396.91 Aligned_cols=208 Identities=25% Similarity=0.393 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 5899999999998899999999999999999999999999999999999999999999998843 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... . .....+..+++.++++.+||
T Consensus 83 ~~~l~~~ltv~eni~~~~~~-------------------~--------------------~~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRA-------------------R--------------------RISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSS-------------------S--------------------CSHHHHTTHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh-------------------c--------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998653210 0 00011234568889999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 124 D-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp G-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999988887643 48999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. ..|+..+..
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (359)
T 2yyz_A 203 RIAVFNQGKLV-QYGTPDEVY 222 (359)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999974 557766543
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.2e-47 Score=396.09 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ce
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~ 162 (554)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5899999999998899999999999999999999999999999999999999999999998742 24
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
||||||++.+++.+||.+|+..+... ......+..+++.++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~ 123 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVREV 123 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999999999999998643110 011222345678889
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||+++
T Consensus 124 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 124 AELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 9999996 567999999999999999999999999999999999999999999988887643 48999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+..+||+|++|++|++. ..|+..+..
T Consensus 203 a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 203 AMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp HHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999974 567766554
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3e-47 Score=396.52 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=175.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 5999999999998899999999999999999999999999999999999999999999998843 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... ......+..+++.++++.+||
T Consensus 91 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 131 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKI---------------------------------------KKFPKDEIDKRVRWAAELLQI 131 (372)
T ss_dssp ------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998653210 001122345678889999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 132 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 132 E-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp G-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred h-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999988887643 48999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. ..|+..+..
T Consensus 211 ri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 211 RIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999974 557766544
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.3e-47 Score=395.67 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCee--eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 97 GVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~--~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
+|+++||+|+|++.+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998877 9999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.||||||++.+++.+||.||+..+... ......+..+++.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~ 123 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 599999999999999999998643210 00112234567888
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~ 317 (554)
+++.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++
T Consensus 124 ~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999996 567999999999999999999999999999999999999999999888887643 4899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++..+||+|++|++|++. ..|+..+..
T Consensus 203 ~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 203 DIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp HHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999974 557766544
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9e-47 Score=374.99 Aligned_cols=208 Identities=20% Similarity=0.292 Sum_probs=175.3
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. ..|+|+||++.+++
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~---~~i~~v~q~~~~~~ 79 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---QSIGFVPQFFSSPF 79 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC---SCEEEECSCCCCSS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe---ccEEEEcCCCccCC
Confidence 3699999999998 8889999999999999999999999999999999999999999999853 36999999998888
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.||+...... .... .........+++.++++.+|+. +..+
T Consensus 80 ~~tv~enl~~~~~~---------------~~~~--------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~ 123 (253)
T 2nq2_C 80 AYSVLDIVLMGRST---------------HINT--------------------FAKPKSHDYQVAMQALDYLNLT-HLAK 123 (253)
T ss_dssp CCBHHHHHHGGGGG---------------GSCT--------------------TCCCCHHHHHHHHHHHHHTTCG-GGTT
T ss_pred CCCHHHHHHHhhhh---------------hccc--------------------ccCCCHHHHHHHHHHHHHcCCh-HHhc
Confidence 89999998642100 0000 0000112245678889999996 4678
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ . |.|||+||||++++..+||+|++|+
T Consensus 124 ~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 203 (253)
T 2nq2_C 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN 203 (253)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 89999999999999999999999999999999999999999999887743 3 8999999999999999999999999
Q ss_pred CCeeeeccCChhHH
Q 008771 331 MGVSRTYEGNYSQY 344 (554)
Q Consensus 331 ~g~~~~~~G~~~~~ 344 (554)
+|+ .+.|+..++
T Consensus 204 ~G~--~~~g~~~~~ 215 (253)
T 2nq2_C 204 KQN--FKFGETRNI 215 (253)
T ss_dssp TTE--EEEEEHHHH
T ss_pred CCe--EecCCHHHH
Confidence 998 456766544
No 28
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.9e-47 Score=390.80 Aligned_cols=203 Identities=27% Similarity=0.409 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q 168 (554)
+|+++||+++|+++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .||||||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999888 99999999999999999999999999999999999999999999998542 5999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... .... .. +++.++++.+||
T Consensus 80 ~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~--~~-~~v~~~l~~~~L 117 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKIK--DP-KRVLDTARDLKI 117 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCCC--CH-HHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHH---------------------------------------cCCC--HH-HHHHHHHHHcCC
Confidence 99999999999998643100 0011 11 568888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 56799999999999999999999999999999999999999999998888764 358999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHH
Q 008771 325 KIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~ 344 (554)
+|++|++|++. ..|+..+.
T Consensus 197 ri~vl~~G~i~-~~g~~~~~ 215 (348)
T 3d31_A 197 RIAVVMDGKLI-QVGKPEEI 215 (348)
T ss_dssp EEEEESSSCEE-EEECHHHH
T ss_pred EEEEEECCEEE-EECCHHHH
Confidence 99999999974 55666544
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.6e-47 Score=383.81 Aligned_cols=214 Identities=25% Similarity=0.374 Sum_probs=177.3
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------ 161 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------ 161 (554)
..++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 44579999999999988999999999999999999999999999999999999999999999988542
Q ss_pred eEEEEeccccccc--CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 162 KIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 162 ~i~~v~Q~~~~~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
.|+||||++.+++ ..||.||+..+....... . ........+++
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~--------------------~---------------~~~~~~~~~~~ 142 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV--------------------Y---------------QDIDDEIRNEA 142 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC--------------------------------------------CCHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhcccc--------------------c---------------cCCcHHHHHHH
Confidence 3999999986544 459999986432100000 0 00011234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeE--EEEec
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM--VIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tv--IiisH 314 (554)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|| |+|||
T Consensus 143 ~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtH 221 (279)
T 2ihy_A 143 HQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221 (279)
T ss_dssp HHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEec
Confidence 8889999995 567899999999999999999999999999999999999999999999888753 38899 99999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. +.|+..++
T Consensus 222 d~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 222 FIEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp CGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred CHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999974 56766544
No 30
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-47 Score=373.05 Aligned_cols=203 Identities=27% Similarity=0.358 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++|++++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|||+||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 3789999999976 49999999999 9999999999999999999999999999999998843 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+...... .......+++.++++.+|+
T Consensus 78 ~~~l~~~ltv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l 116 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGI 116 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTC
T ss_pred CCccCCCCcHHHHHHHHHHH-----------------------------------------cCCchHHHHHHHHHHHcCC
Confidence 99888889999998643100 0000113467788999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++..+||
T Consensus 117 ~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 117 A-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp T-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred H-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 467899999999999999999999999999999999999999999999888753 38999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. +.|+..++.
T Consensus 196 ~i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 196 EVAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EECCHHHHH
Confidence 99999999974 567766553
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.2e-47 Score=383.57 Aligned_cols=252 Identities=21% Similarity=0.305 Sum_probs=181.9
Q ss_pred hhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCC
Q 008771 55 EKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNG 133 (554)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NG 133 (554)
|....+.+..+++++++..+.+.+.... ............|+++||+|+|+ +.++|+||||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCC
Confidence 4445666667777776654433221110 00011112235699999999995 5789999999999999999999999
Q ss_pred ccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008771 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (554)
Q Consensus 134 sGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 203 (554)
||||||+++|+|+++|++|+|.++|.+. .||||||++.++ ..||+||+..+..... .+.+...+
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~~~~-----~~~~~~~~ 164 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAG-----NDEVEAAA 164 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTSTTCC-----HHHHHHHH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC-cccHHHHHHhhcccCC-----HHHHHHHH
Confidence 9999999999999999999999998642 599999999876 5699999975421000 00000000
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
.. ..+...+..+.. |+. ...++...+|||||||||+|||||+.+|+||||
T Consensus 165 ------------------------~~---~~l~~~i~~lp~--gl~-t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlL 214 (306)
T 3nh6_A 165 ------------------------QA---AGIHDAIMAFPE--GYR-TQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214 (306)
T ss_dssp ------------------------HH---HTCHHHHHHSTT--GGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred ------------------------HH---hCcHHHHHhccc--hhh-hHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 00 001111111111 332 234566789999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 284 DEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||||++||+.+...+.+.|++ .++|+|+||||++.+.. ||+|++|++|++ ...|++.+.+..
T Consensus 215 DEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~i-v~~G~~~el~~~ 278 (306)
T 3nh6_A 215 DEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCI-VERGRHEALLSR 278 (306)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEE-EEEECHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEE-EEECCHHHHHhc
Confidence 999999999999999888754 47899999999999986 999999999998 467888877653
No 32
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-46 Score=376.10 Aligned_cols=208 Identities=26% Similarity=0.360 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeC--C---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------eEE
Q 008771 97 GVKLENISKSYK--G---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~--~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------~i~ 164 (554)
+|+++||+++|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 4 6799999999999999999999999999999999999999999999998542 599
Q ss_pred EEeccc-ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~-~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
||+|++ ..++..||.||+...... ........+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~----------------------------------------~~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKN----------------------------------------FYPDRDPVPLVKKAM 121 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTT----------------------------------------TCTTSCSHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHh----------------------------------------cCCHHHHHHHHHHHH
Confidence 999996 456778999998542100 001123345678889
Q ss_pred hhcCCCc-cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 244 PELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
+.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999962 457899999999999999999999999999999999999999999999887743 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
..+||+|++|++|++. +.|+..+..
T Consensus 202 ~~~~d~v~~l~~G~i~-~~g~~~~~~ 226 (266)
T 2yz2_A 202 INHVDRVVVLEKGKKV-FDGTRMEFL 226 (266)
T ss_dssp GGGCSEEEEEETTEEE-EEEEHHHHH
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999874 566655443
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.9e-46 Score=372.11 Aligned_cols=216 Identities=19% Similarity=0.255 Sum_probs=177.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCCc-----------e
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~~-----------~ 162 (554)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+. .
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 469999999999988999999999999999999999999999999999999 468999999988532 3
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|++|++.+++..||.+|+........ . ... . ......+...++.++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~----------~-~~~-~--------------------~~~~~~~~~~~~~~~ 146 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVR----------S-YRG-Q--------------------ETLDRFDFQDLMEEK 146 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHH----------H-GGG-C--------------------CCCCHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhh----------h-hhc-c--------------------ccCCHHHHHHHHHHH
Confidence 9999999998889999998753210000 0 000 0 000112234568889
Q ss_pred hhhcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
++.+|+.....++++. +|||||||||+|||||+.+|+||||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 147 l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred HHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 9999996556688887 5999999999999999999999999999999999999999998754 48899999999999
Q ss_pred HHhh-cceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQL-CTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~-~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+..+ ||+|++|++|++. +.|+..+.
T Consensus 227 ~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 227 LDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp GGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 9886 9999999999984 55666543
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.9e-46 Score=372.33 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCCc-----------eE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~~-----------~i 163 (554)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999999 789999999988532 38
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..||.+|+....... ... ........+++.+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l 126 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAK--------------LGR----------------------EVGVAEFWTKVKKAL 126 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHH--------------HTS----------------------CCCHHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHhh--------------ccc----------------------cCCHHHHHHHHHHHH
Confidence 99999999888899999985321000 000 001112345677889
Q ss_pred hhcCCCccccCCCCCC-CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVAS-FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~-LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l 319 (554)
+.+|+..+..++++.+ |||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|||+||||++++
T Consensus 127 ~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 9999965567899999 99999999999999999999999999999999999999988874 3589999999999999
Q ss_pred Hhh-cceEEEeeCCeeeeccCChh
Q 008771 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 320 ~~~-~d~i~~l~~g~~~~~~G~~~ 342 (554)
..+ ||+|++|++|++. +.|+..
T Consensus 207 ~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 207 NYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp GTSCCSEEEEEETTEEE-EEESHH
T ss_pred HHhcCCEEEEEECCEEE-EEeCHH
Confidence 888 5999999999974 456654
No 35
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.6e-45 Score=368.08 Aligned_cols=213 Identities=22% Similarity=0.357 Sum_probs=171.4
Q ss_pred CccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
..+|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 356999999999976 6899999999999999999999999999999999999999999999998542
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+||||++.+++ .||.||+..+... ......+.. ......+.+
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~------------------~~~~~~~~~-----------------~~~~~~~~~ 137 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTR------------------TPTMEEITA-----------------VAMESGAHD 137 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSS------------------CCCHHHHHH-----------------HHHHHTCHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhccc------------------CChHHHHHH-----------------HHHHHhHHH
Confidence 4999999998765 5999998643210 000000000 000112344
Q ss_pred Hhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
+++.+ |+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 138 ~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 138 FISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 55555 554 346788999999999999999999999999999999999999999999988753 37899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++++.. ||+|++|++|++. ..|+..++..
T Consensus 217 ~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 217 LSLAER-AHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HHHHTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999975 9999999999974 5677766543
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-45 Score=364.53 Aligned_cols=209 Identities=22% Similarity=0.380 Sum_probs=164.1
Q ss_pred cEEEEeEEEEe--CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEE
Q 008771 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y--~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~ 164 (554)
.|+++||+|+| +++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 367899999999999999999999999999999999999999999999988532 499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
||||++.+++ .||.||+...... .+.+.+...++ . ..+.++++
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~~-------------------~~~~~~~~~l~----------~-------~~l~~~~~ 129 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANPG-------------------MSVEKVIYAAK----------L-------AGAHDFIS 129 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCTT-------------------CCHHHHHHHHH----------H-------HTCHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCCC-------------------CCHHHHHHHHH----------H-------hChHHHHH
Confidence 9999998765 6999998642100 00000000000 0 00111222
Q ss_pred hc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 008771 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~ 320 (554)
.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++.
T Consensus 130 ~~~~gl~-~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 130 ELREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp TSTTGGG-CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hCcchhh-hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 22 232 234667889999999999999999999999999999999999999999888754 4899999999999986
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.||+|++|++|++. +.|+..+..
T Consensus 209 -~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 209 -NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp -TSSEEEEEETTEEE-EEECHHHHH
T ss_pred -hCCEEEEEECCEEE-EECCHHHHH
Confidence 49999999999974 567766554
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.5e-45 Score=366.11 Aligned_cols=199 Identities=23% Similarity=0.304 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEE-
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA- 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~- 164 (554)
+|+++|++++|++ +++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.+ ..|+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 4899999999987 789999999999 9999999999999999999999999 999999998743 2599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+ ..||.||+..... + . ....+++.++++
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~---------------~---------------------------~-~~~~~~~~~~l~ 113 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEE---------------L---------------------------K-GLDRDLFLEMLK 113 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHH---------------H---------------------------T-CCCHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhhh---------------h---------------------------c-chHHHHHHHHHH
Confidence 99999877 7899999853210 0 0 112345778889
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcc
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d 324 (554)
.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++...|||+||||++++..+||
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 99996346789999999999999999999999999999999999999999999999987653499999999999999999
Q ss_pred -eEEEeeCCeeeeccCChhH
Q 008771 325 -KIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 325 -~i~~l~~g~~~~~~G~~~~ 343 (554)
+|++|++|++. +.|+..+
T Consensus 194 ~~i~~l~~G~i~-~~g~~~~ 212 (263)
T 2pjz_A 194 YKAYFLVGNRLQ-GPISVSE 212 (263)
T ss_dssp SEEEEEETTEEE-EEEEHHH
T ss_pred ceEEEEECCEEE-EecCHHH
Confidence 99999999874 5565543
No 38
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-46 Score=359.79 Aligned_cols=190 Identities=22% Similarity=0.301 Sum_probs=165.5
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEeccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~ 170 (554)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+|+||++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 45999999999988 99999999999999999999999999999999999999999999999854 3699999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++..||.||+..... .... ... .+++.++++.+|+..
T Consensus 88 ~~~~~~tv~enl~~~~~---------------------------------------~~~~-~~~-~~~~~~~l~~~gl~~ 126 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVAS---------------------------------------LYGV-KVN-KNEIMDALESVEVLD 126 (214)
T ss_dssp CCCTTSBHHHHHHHHHH---------------------------------------HTTC-CCC-HHHHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHH---------------------------------------hcCC-chH-HHHHHHHHHHcCCCc
Confidence 88888899999853210 0001 112 456788899999974
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
. ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++..+||+|+
T Consensus 127 -~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 127 -L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp -T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred -C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 888999999999999999999999999999999999999999988887753 37899999999999999999987
Q ss_pred Ee
Q 008771 328 ET 329 (554)
Q Consensus 328 ~l 329 (554)
.+
T Consensus 205 ~~ 206 (214)
T 1sgw_A 205 KY 206 (214)
T ss_dssp GG
T ss_pred Ee
Confidence 54
No 39
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.1e-45 Score=362.80 Aligned_cols=198 Identities=28% Similarity=0.329 Sum_probs=171.2
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
.+|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+. .|+|
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 36899999986 6999999999999999999999999999999999999999 9999988542 4999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++..||.||+..... .... ..++.++++.
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~-~~~~~~~l~~ 113 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQH-------------------------------------------DKTR-TELLNDVAGA 113 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCS-------------------------------------------STTC-HHHHHHHHHH
T ss_pred ECCCCccCCCCcHHHHHHHhhc-------------------------------------------cCCc-HHHHHHHHHH
Confidence 9999988888899999853200 0001 4557778899
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCC-------eEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecC
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD-------LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~-------lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd 315 (554)
+|+. +..++++.+|||||||||+|||||+.+|+ +|||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 114 ~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 114 LALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp TTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9995 46788999999999999999999999999 9999999999999999999888743 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||+|++|++|++. +.|+..++
T Consensus 193 ~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 193 LNHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999974 55665543
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.7e-44 Score=353.59 Aligned_cols=207 Identities=25% Similarity=0.393 Sum_probs=162.1
Q ss_pred ccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 96 ~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
.+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .|+|+||++.++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCccc
Confidence 4699999999995 47899999999999999999999999999999999999999999999987 599999999886
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-ccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADD 252 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~ 252 (554)
+. ||.||+..+.... . .. ....+ +.. .+.+.++.+... ...
T Consensus 82 ~~-tv~enl~~~~~~~-~--~~---~~~~~------------------------~~~-------~l~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 82 PG-TIKENIIFGVSYD-E--YR---YRSVI------------------------KAC-------QLEEDISKFAEKDNIV 123 (229)
T ss_dssp SB-CHHHHHHTTSCCC-H--HH---HHHHH------------------------HHT-------TCHHHHTTSTTGGGSC
T ss_pred CC-CHHHHhhccCCcC-h--HH---HHHHH------------------------HHh-------CcHHHHHhCccccccc
Confidence 64 9999986431100 0 00 00000 000 011122222211 012
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+. +++ .+.|||+||||++++. .||+|++|
T Consensus 124 ~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp BCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 3456789999999999999999999999999999999999999999986 333 3789999999999986 59999999
Q ss_pred eCCeeeeccCChhHHH
Q 008771 330 EMGVSRTYEGNYSQYV 345 (554)
Q Consensus 330 ~~g~~~~~~G~~~~~~ 345 (554)
++|++. +.|++.++.
T Consensus 203 ~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 203 HEGSSY-FYGTFSELQ 217 (229)
T ss_dssp ETTEEE-EEECHHHHH
T ss_pred ECCEEE-EECCHHHHH
Confidence 999974 567776554
No 41
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-45 Score=363.25 Aligned_cols=203 Identities=21% Similarity=0.346 Sum_probs=164.9
Q ss_pred cEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
+|+++||+|+| +++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 38999999999 56789999999999999999999999999999999999999999999998742 24999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++ .||.||+...... ...+.++.++++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~--------------------------------------------~~~~~~~~~~l~~ 115 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEG--------------------------------------------DYTDEDLWQVLDL 115 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTS--------------------------------------------CSCHHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhccC--------------------------------------------CCCHHHHHHHHHH
Confidence 999998765 5999998532100 0001223334444
Q ss_pred cCCCc----------cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred hChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 44432 123456789999999999999999999999999999999999988887777643 489999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++++. .||+|++|++|++ ...|+..++..
T Consensus 196 H~~~~~~-~~d~v~~l~~G~i-~~~g~~~~~~~ 226 (243)
T 1mv5_A 196 HRLSTIV-DADKIYFIEKGQI-TGSGKHNELVA 226 (243)
T ss_dssp CSHHHHH-HCSEEEEEETTEE-CCCSCHHHHHH
T ss_pred CChHHHH-hCCEEEEEECCEE-EEeCCHHHHHh
Confidence 9999986 5999999999997 46788776543
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=356.15 Aligned_cols=201 Identities=18% Similarity=0.345 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 97 ~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .|+|+||++.+ +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~~-~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAWI-Q 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCCC-C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCcC-C
Confidence 589999999997 47899999999999999999999999999999999999999999999987 59999999865 6
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH---HHhhhcCCCc-
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS---KLMPELGFTA- 250 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~lgl~~- 250 (554)
..||.||+...... . .....++. .+++.+++.+
T Consensus 79 ~~tv~enl~~~~~~-------------------~------------------------~~~~~~~~~~~~l~~~~~~~~~ 115 (237)
T 2cbz_A 79 NDSLRENILFGCQL-------------------E------------------------EPYYRSVIQACALLPDLEILPS 115 (237)
T ss_dssp SEEHHHHHHTTSCC-------------------C------------------------TTHHHHHHHHTTCHHHHTTSTT
T ss_pred CcCHHHHhhCcccc-------------------C------------------------HHHHHHHHHHHhhHHHHHhccc
Confidence 78999998642100 0 00000000 1122223211
Q ss_pred ---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---c--CCCeEEEEecCHHHHHhh
Q 008771 251 ---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K--QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 251 ---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~--~g~tvIiisHd~~~l~~~ 322 (554)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. + .|.|||+||||++++. .
T Consensus 116 ~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~ 194 (237)
T 2cbz_A 116 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-Q 194 (237)
T ss_dssp GGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-G
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-h
Confidence 12467889999999999999999999999999999999999999999999883 2 4889999999999985 6
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|++|++|++. ..|++.++..
T Consensus 195 ~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 195 VDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp SSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEEeCCEEE-EeCCHHHHhh
Confidence 9999999999974 5677776543
No 43
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5e-44 Score=356.75 Aligned_cols=202 Identities=19% Similarity=0.305 Sum_probs=162.5
Q ss_pred ccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------e
Q 008771 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~ 162 (554)
++|+++||+++|++ +++|+||||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.+. .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 45999999999975 4699999999999999999999999999999999999987 89999988532 4
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+||||++.++. .||.+|+..+.... .+.++.++
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~---------------------------------------------~~~~~~~~ 128 (260)
T 2ghi_A 95 IGIVPQDTILFN-ETIKYNILYGKLDA---------------------------------------------TDEEVIKA 128 (260)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTTCTTC---------------------------------------------CHHHHHHH
T ss_pred EEEEcCCCcccc-cCHHHHHhccCCCC---------------------------------------------CHHHHHHH
Confidence 999999998764 69999986421000 00111112
Q ss_pred hhhcCC-------Cc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 008771 243 MPELGF-------TA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (554)
Q Consensus 243 l~~lgl-------~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvI 310 (554)
++.+++ +. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .+.|||
T Consensus 129 l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tvi 208 (260)
T 2ghi_A 129 TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLI 208 (260)
T ss_dssp HHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEE
T ss_pred HHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 222221 11 123567889999999999999999999999999999999999999998887753 378999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++. .||+|++|++|++. ..|++.+...
T Consensus 209 ivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 209 IIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp EECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999986 59999999999974 5677776644
No 44
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=370.22 Aligned_cols=201 Identities=20% Similarity=0.350 Sum_probs=170.3
Q ss_pred CccEEEEeEEEEe--CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ce
Q 008771 95 SSGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MK 162 (554)
Q Consensus 95 ~~~i~~~~ls~~y--~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~ 162 (554)
...|+++||+|+| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+ ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 3569999999999 56789999999999999999999999999999999999998 99999999864 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+||||++.+++ .||++|+... .....+++.++
T Consensus 96 ig~v~Q~~~lf~-~tv~enl~~~----------------------------------------------~~~~~~~v~~~ 128 (390)
T 3gd7_A 96 FGVIPQKVFIFS-GTFRKNLDPN----------------------------------------------AAHSDQEIWKV 128 (390)
T ss_dssp EEEESCCCCCCS-EEHHHHHCTT----------------------------------------------CCSCHHHHHHH
T ss_pred EEEEcCCcccCc-cCHHHHhhhc----------------------------------------------cccCHHHHHHH
Confidence 999999998865 6999997411 00113345667
Q ss_pred hhhcCCCccccCCCCCC-----------CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeE
Q 008771 243 MPELGFTADDGDRLVAS-----------FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM 309 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~-----------LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tv 309 (554)
++.+|+. +..++++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .+.|+
T Consensus 129 l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tv 207 (390)
T 3gd7_A 129 ADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 207 (390)
T ss_dssp HHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCE
T ss_pred HHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEE
Confidence 7778875 456777777 999999999999999999999999999999999999999988865 47899
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+||||++.+. .||||++|++|++. ..|+..+.+.
T Consensus 208 i~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~~ 242 (390)
T 3gd7_A 208 ILCEARIEAML-ECDQFLVIEENKVR-QYDSILELYH 242 (390)
T ss_dssp EEECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHHH
T ss_pred EEEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999987664 69999999999984 5577665443
No 45
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.7e-42 Score=381.23 Aligned_cols=255 Identities=21% Similarity=0.353 Sum_probs=188.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+++|+.+..+.+.+... .. .........|+++||+|+|++ +++|+|+||+|++||+
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~ 371 (582)
T 3b5x_A 297 PLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GK--YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CC--CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCE
Confidence 4555555666788888888888776544332111 00 000112356999999999974 6799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
++|+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+......
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---- 446 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAEGEYT---- 446 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCCCCCC----
Confidence 999999999999999999999999999999998542 5999999998865 5999998643100000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
.+++.+.+ +..+ + .+.++.+ |++. ..++...+||||||||++||||
T Consensus 447 ~~~~~~~~------------------------~~~~---l----~~~~~~~p~g~~t-~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 447 REQIEQAA------------------------RQAH---A----MEFIENMPQGLDT-VIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred HHHHHHHH------------------------HHCC---C----HHHHHhCcccccc-hhcCCCCcCCHHHHHHHHHHHH
Confidence 00000000 0000 1 1111221 3322 2345568999999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+.+|++|||||||++||+.+.+.+.+.+++ .|+|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLLA 567 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999888754 3899999999999996 69999999999974 5688877654
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-42 Score=380.89 Aligned_cols=254 Identities=21% Similarity=0.295 Sum_probs=187.6
Q ss_pred hhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEE
Q 008771 51 AATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGL 128 (554)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~l 128 (554)
.....+..++++..+.+|+.+..+.+++.... ............|+++|++|+|+ +.++|+|+||+|++||++||
T Consensus 298 ~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~i 374 (587)
T 3qf4_A 298 MIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAV 374 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEE
Confidence 33444456777888888887654433211110 00001112345699999999995 46799999999999999999
Q ss_pred ECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHH
Q 008771 129 VGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (554)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (554)
+||||||||||+++|+|+++|++|+|.++|.+. +|+||||++.++ ..||+||+..+..... .+.
T Consensus 375 vG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~-----~~~ 448 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDAT-----DDE 448 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC-SEEHHHHHTTTCSSCC-----HHH
T ss_pred ECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc-CccHHHHHhccCCCCC-----HHH
Confidence 999999999999999999999999999998753 599999999886 4599999864311000 000
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+.. ..+. .. +.+.+..+ |++ ...++.+.+||||||||++|||||+.
T Consensus 449 ~~~------------------------~~~~---~~----~~~~i~~l~~g~~-~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 449 IVE------------------------AAKI---AQ----IHDFIISLPEGYD-SRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHH------------------------HHHH---TT----CHHHHHTSSSGGG-CEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred HHH------------------------HHHH---hC----cHHHHHhcccchh-hHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 000 0000 00 11112222 333 23466778999999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+. .||+|++|++|++ ...|++++....
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i-~~~g~~~el~~~ 567 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKV-AGFGTHKELLEH 567 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEE-EEEECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 9999999999999999999999888753 5899999999999996 7999999999997 567888887654
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.1e-42 Score=382.64 Aligned_cols=258 Identities=22% Similarity=0.376 Sum_probs=187.5
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+++|+++..+.+++.... ............|+++|++|+|++ .++|+|+||+|++||+
T Consensus 293 ~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~ 369 (578)
T 4a82_A 293 PLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCE
Confidence 44445555567888888888887765544322110 000111122356999999999964 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+.....
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~----- 443 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTAT----- 443 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSSCC-----
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCc-ccHHHHHhcCCCCCC-----
Confidence 999999999999999999999999999999998642 5999999998865 499999864321000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+.+.+ .++... ....+..+.. |++ ...+....+|||||||||+|||||+
T Consensus 444 ~~~~~~------------------------~~~~~~---~~~~~~~lp~--g~~-t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 444 DEEVVE------------------------AAKMAN---AHDFIMNLPQ--GYD-TEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp HHHHHH------------------------HHHHTT---CHHHHHTSTT--GGG-CBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------------HHHHhC---cHHHHHhCcc--hhh-hhhccCCCcCCHHHHHHHHHHHHHH
Confidence 000000 000000 0111111111 222 1234556799999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+|++|||||||++||+.+...+.+.+++ .++|+|+||||++.+.. ||+|++|++|++ ...|++++...
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i-~~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHI-VETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEE-EEEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHh
Confidence 99999999999999999999988887753 57899999999999965 999999999998 46788877654
No 48
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-42 Score=383.55 Aligned_cols=258 Identities=22% Similarity=0.326 Sum_probs=187.6
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~ 126 (554)
.+......+..++.+..+++|+.+..+.+.+... ............|+++||+|+|++ +++|+|+||+|++||++
T Consensus 309 ~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~ 384 (598)
T 3qf4_B 309 PLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKV 384 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEE
Confidence 4444555566778888888888776554432211 111111123356999999999964 67999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++ ..||+||+..+...
T Consensus 385 ~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~-------- 455 (598)
T 3qf4_B 385 ALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPG-------- 455 (598)
T ss_dssp EEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SSBHHHHHHSSSTT--------
T ss_pred EEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cccHHHHHhcCCCC--------
Confidence 99999999999999999999999999999998643 599999999876 56999998643100
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
..+.+ + .. ..........+..+.+ |++. .......+|||||||||+|||||+.
T Consensus 456 ----------~~~~~-~----------~~---~~~~~~~~~~~~~~~~--g~~t-~~~~~g~~LSgGq~Qrv~iAral~~ 508 (598)
T 3qf4_B 456 ----------ATDEE-I----------KE---AAKLTHSDHFIKHLPE--GYET-VLTDNGEDLSQGQRQLLAITRAFLA 508 (598)
T ss_dssp ----------CCTTH-H----------HH---HTTTTTCHHHHHTSTT--GGGC-BCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred ----------CCHHH-H----------HH---HHHHhCCHHHHHhccc--cccc-hhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 00000 0 00 0000011111111111 1111 1123346899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+.. ||+|++|++|++ ...|++++....
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i-~~~g~~~~l~~~ 579 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEI-VEMGKHDELIQK 579 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSE-EECSCHHHHHHT
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHhC
Confidence 9999999999999999999998887754 58999999999999975 999999999997 567888877653
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.8e-42 Score=379.52 Aligned_cols=251 Identities=18% Similarity=0.253 Sum_probs=184.2
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCcc-EEEEeEEEEeCC---eeeEEceeEEEECC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSG-VKLENISKSYKG---VTVLKDVTWEVKKG 123 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~ls~~y~~---~~~l~~isl~i~~G 123 (554)
.+......+..++.+..+++|+++..+.+++.... ............ |+++||+|+|++ .++|+|+||+|++|
T Consensus 294 pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G 370 (595)
T 2yl4_A 294 SIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN---EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG 370 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS---CSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCC
Confidence 44445555566778888888887654433211110 000000112345 999999999974 47999999999999
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHH
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~ 193 (554)
|++||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+....
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~---- 445 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP---- 445 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST----
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc----
Confidence 99999999999999999999999999999999998542 5999999998865 59999996431100
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC----------ccccCCCCCCCChh
Q 008771 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT----------ADDGDRLVASFSSG 263 (554)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----------~~~~~~~~~~LSGG 263 (554)
....++++.++++.+|+. ....++...+||||
T Consensus 446 --------------------------------------~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgG 487 (595)
T 2yl4_A 446 --------------------------------------SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487 (595)
T ss_dssp --------------------------------------TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHH
T ss_pred --------------------------------------cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHH
Confidence 000011222222322221 01223445899999
Q ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCCh
Q 008771 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (554)
Q Consensus 264 qrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~ 341 (554)
|||||+|||||+.+|++|||||||++||+.+.+.+.+.+++ .++|+|+||||++.+. .||+|++|++|++. ..|++
T Consensus 488 q~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~ 565 (595)
T 2yl4_A 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKIT-EYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCH
Confidence 99999999999999999999999999999999999888754 4899999999999996 59999999999974 56777
Q ss_pred hHHHH
Q 008771 342 SQYVL 346 (554)
Q Consensus 342 ~~~~~ 346 (554)
++...
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHh
Confidence 66543
No 50
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.4e-42 Score=380.59 Aligned_cols=257 Identities=22% Similarity=0.351 Sum_probs=187.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+++|+.+..+.+.+... .. .........|+++||+|+|++ +++|+|+||+|++||+
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~ 371 (582)
T 3b60_A 297 PLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GK--RVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKT 371 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CC--BCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CC--CCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCE
Confidence 4555555666778888888887765433322110 00 000112356999999999973 6799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+......
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---- 446 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTEEYS---- 446 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTSCCC----
T ss_pred EEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCCCCCC----
Confidence 999999999999999999999999999999998542 5999999998865 5999998643100000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++.+ ..+..+ +...++.+.+ |++ ...++...+||||||||++|||||+
T Consensus 447 ~~~~~~------------------------~l~~~~---l~~~~~~~p~--g~~-~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 447 REQIEE------------------------AARMAY---AMDFINKMDN--GLD-TIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HHHHHH------------------------HHHTTT---CHHHHHHSTT--GGG-SBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------------HHHHcC---CHHHHHhccc--ccc-ccccCCCCCCCHHHHHHHHHHHHHH
Confidence 000000 000011 1111111111 222 2334567899999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHHH
Confidence 99999999999999999999998887753 4899999999999986 69999999999974 5688776654
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.1e-41 Score=344.26 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=147.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccC
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (554)
+.|+++||++.+ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++| .|+|+||++.+++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~~- 112 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNSWIMP- 112 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSCCCCS-
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCCccCc-
Confidence 469999999864 5799999999999999999999999999999999999999999999987 5999999998766
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-ccccC
Q 008771 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGD 254 (554)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~ 254 (554)
.||.||+. ..... . . .....+ +.. . +.+.+..+... ....+
T Consensus 113 ~tv~enl~-~~~~~-~--~---~~~~~~------------------------~~~---~----l~~~l~~~~~~~~~~~~ 154 (290)
T 2bbs_A 113 GTIKENII-GVSYD-E--Y---RYRSVI------------------------KAC---Q----LEEDISKFAEKDNIVLG 154 (290)
T ss_dssp SBHHHHHH-TTCCC-H--H---HHHHHH------------------------HHT---T----CHHHHHTSTTGGGCBC-
T ss_pred ccHHHHhh-Ccccc-h--H---HHHHHH------------------------HHh---C----hHHHHHhccccccchhc
Confidence 49999986 32100 0 0 000000 000 0 11112222110 01234
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH-cc--CCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-GK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~~--~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
+.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+ ++ .|+|||+||||++++. .||+|++|++
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 233 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEET
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 557899999999999999999999999999999999999999999863 33 4889999999999986 5999999999
Q ss_pred CeeeeccCChhHHH
Q 008771 332 GVSRTYEGNYSQYV 345 (554)
Q Consensus 332 g~~~~~~G~~~~~~ 345 (554)
|++. +.|++.+..
T Consensus 234 G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 234 GSSY-FYGTFSELQ 246 (290)
T ss_dssp TEEE-EEECHHHHH
T ss_pred CeEE-EeCCHHHHh
Confidence 9974 567776654
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.9e-40 Score=395.03 Aligned_cols=255 Identities=21% Similarity=0.319 Sum_probs=185.7
Q ss_pred hhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECC
Q 008771 55 EKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGV 131 (554)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~ 131 (554)
.+..+..+..+.+++++..+.+++..... .........+.|+++||+|+|++ .++|+||||+|++||++||||+
T Consensus 1037 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~ 1113 (1321)
T 4f4c_A 1037 YFPEYAKATFAGGIIFGMLRKISKIDSLS---LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGP 1113 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSCTTC---CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCCcc---CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECC
Confidence 33456777777787776544332211111 11111123456999999999964 3699999999999999999999
Q ss_pred CCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHH
Q 008771 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201 (554)
Q Consensus 132 NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~ 201 (554)
||||||||+++|.|+++|++|+|.++|.++ +|+||||+|.+ ++.||++|+..+..+.
T Consensus 1114 SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L-F~gTIreNI~~gld~~------------ 1180 (1321)
T 4f4c_A 1114 SGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL-FDCSIAENIIYGLDPS------------ 1180 (1321)
T ss_dssp TTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC-CSEEHHHHHSSSSCTT------------
T ss_pred CCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe-eCccHHHHHhccCCCC------------
Confidence 999999999999999999999999999653 59999999988 5679999986432100
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeE
Q 008771 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (554)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lL 281 (554)
...+ +++...++.. .+...+.++-+ |++... ...-.+||||||||++|||||+++|+||
T Consensus 1181 ----~~sd-----------~ei~~Al~~a---~l~~~I~~Lp~--GldT~v-ge~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1181 ----SVTM-----------AQVEEAARLA---NIHNFIAELPE--GFETRV-GDRGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp ----TSCH-----------HHHHHHHHHT---TCHHHHHTSTT--TTCSEE-TTTSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred ----CCCH-----------HHHHHHHHHh---CChHHHHcCcC--CCCCEe-cCCCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 0000 0000011111 11111222111 343322 2234689999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHH
Q 008771 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 282 lLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~ 348 (554)
|||||||+||+++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|+++. .|++.+.+..+
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMSEK 1306 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHHCC
T ss_pred EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhCC
Confidence 99999999999999999999976 48999999999999975 99999999999855 58888877643
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-39 Score=354.74 Aligned_cols=202 Identities=27% Similarity=0.367 Sum_probs=170.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
..+++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+ ...|+|+||++...+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCC
Confidence 3579999999999875 699999999999999999999999999999999999999999986 347999999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+++...... . ......+.++++.+|+. ...+
T Consensus 361 ~~tv~~~~~~~~~~----------------------------------------~---~~~~~~~~~~l~~~~l~-~~~~ 396 (538)
T 1yqt_A 361 EGTVYELLSKIDAS----------------------------------------K---LNSNFYKTELLKPLGII-DLYD 396 (538)
T ss_dssp SSBHHHHHHHHHHH----------------------------------------H---HTCHHHHHHTTTTTTCG-GGTT
T ss_pred CCcHHHHHHhhhcc----------------------------------------C---CCHHHHHHHHHHHcCCh-hhhc
Confidence 88997765321000 0 00124567789999996 5779
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++ .|.|||+||||++++..+||||++|+
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999998
Q ss_pred C--CeeeeccCChhHHH
Q 008771 331 M--GVSRTYEGNYSQYV 345 (554)
Q Consensus 331 ~--g~~~~~~G~~~~~~ 345 (554)
+ |.+ ...|+..+..
T Consensus 477 ~~~~~~-~~~g~~~~~~ 492 (538)
T 1yqt_A 477 GEPGKY-GRALPPMGMR 492 (538)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-eecCCHHHHH
Confidence 5 443 3457665543
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.8e-39 Score=356.30 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=170.0
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
..+++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. ..|+|+||++...+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCccCCC
Confidence 3579999999999774 6999999999999999999999999999999999999999999873 46999999988778
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+++...... . .....++.++++.+|+. +..+
T Consensus 431 ~~tv~e~~~~~~~~------------------------------~-------------~~~~~~~~~~l~~~~l~-~~~~ 466 (607)
T 3bk7_A 431 EGTVYELLSKIDSS------------------------------K-------------LNSNFYKTELLKPLGII-DLYD 466 (607)
T ss_dssp SSBHHHHHHHHHHH------------------------------H-------------HHCHHHHHHTHHHHTCT-TTTT
T ss_pred CCcHHHHHHhhhcc------------------------------C-------------CCHHHHHHHHHHHcCCc-hHhc
Confidence 88998766421000 0 00123467788899996 5779
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999999999999999999999999998887753 58999999999999999999999998
Q ss_pred C--CeeeeccCChhHHH
Q 008771 331 M--GVSRTYEGNYSQYV 345 (554)
Q Consensus 331 ~--g~~~~~~G~~~~~~ 345 (554)
+ |.+ ...|+..+..
T Consensus 547 ~~~g~~-~~~g~p~~~~ 562 (607)
T 3bk7_A 547 GEPGRH-GRALPPMGMR 562 (607)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-EecCCHHHHH
Confidence 5 443 3456665543
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.6e-39 Score=349.52 Aligned_cols=192 Identities=25% Similarity=0.326 Sum_probs=164.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
...++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++ ..|+|++|+....+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--QILSYKPQRIFPNY 343 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--CCEEEECSSCCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--eeeEeechhccccc
Confidence 4568999999999874 58888999999999999999999999999999999999999999875 36899999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+|+..... . ........+.++++.+|+. ...+
T Consensus 344 ~~tv~~~l~~~~~-----------------~-------------------------~~~~~~~~~~~~l~~~~l~-~~~~ 380 (538)
T 3ozx_A 344 DGTVQQYLENASK-----------------D-------------------------ALSTSSWFFEEVTKRLNLH-RLLE 380 (538)
T ss_dssp SSBHHHHHHHHCS-----------------S-------------------------TTCTTSHHHHHTTTTTTGG-GCTT
T ss_pred CCCHHHHHHHhhh-----------------h-------------------------ccchhHHHHHHHHHHcCCH-HHhc
Confidence 8899988742100 0 0001123467788999986 5678
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|.|||+||||++++..+||||++|+
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999988888764 358999999999999999999999998
Q ss_pred CC
Q 008771 331 MG 332 (554)
Q Consensus 331 ~g 332 (554)
++
T Consensus 461 ~~ 462 (538)
T 3ozx_A 461 GE 462 (538)
T ss_dssp EE
T ss_pred CC
Confidence 63
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.1e-38 Score=364.22 Aligned_cols=245 Identities=23% Similarity=0.375 Sum_probs=175.8
Q ss_pred CccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccc
Q 008771 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
.++|+++|++|+|++ +++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++ +.+|+|++|++..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~-~~~I~yv~Q~~~~ 747 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE-NCRIAYIKQHAFA 747 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT-TCCEEEECHHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC-ccceEeeccchhh
Confidence 457999999999975 6799999999999999999999999999999999999999999999985 3579999998632
Q ss_pred ----ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHh---------------------h----------------------
Q 008771 173 ----SMSRTVREEFMSAFKEEMEIAGKLERVQKALE---------------------S---------------------- 205 (554)
Q Consensus 173 ----~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---------------------- 205 (554)
....|+.+++...+....... .+......+. .
T Consensus 748 ~l~~~~~~t~~e~i~~~~q~g~d~~-~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 748 HIESHLDKTPSEYIQWRFQTGEDRE-TMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HGGGCTTSCHHHHHHHHTTTSSCTT-TTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhcccccCHHHHHHHHhhccchhh-hhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 234688887653221000000 0000000000 0
Q ss_pred ------ccCc-----------HHH---HHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc-cCCCCCCCChhH
Q 008771 206 ------AVDD-----------MDL---MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-GDRLVASFSSGW 264 (554)
Q Consensus 206 ------~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGq 264 (554)
.... ... +..+..+++................++.++|+.+||.... .++++.+|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 0000 000 0000001110000001111223456789999999997544 578899999999
Q ss_pred HHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCCh
Q 008771 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (554)
Q Consensus 265 rqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~ 341 (554)
||||+|||||+.+|+||||||||++||+.++..+.+.|++.++|||+||||++++..+||+|++|++|++.....+|
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~ 983 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC-----
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCcc
Confidence 99999999999999999999999999999999999999998999999999999999999999999999875443333
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-38 Score=380.33 Aligned_cols=215 Identities=23% Similarity=0.400 Sum_probs=166.1
Q ss_pred CccEEEEeEEEEeCCe---eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 95 SSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~---~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
.+.|+++||+|+|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 4569999999999753 699999999999999999999999999999999999999999999998653
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
+|+||||++.+ +..||+||+..+.... ....+.+. ...+ ...+.+
T Consensus 1108 ~i~~v~Q~~~l-~~~ti~eNi~~~~~~~-----------------~~~~~~i~----------~~~~-------~~~~~~ 1152 (1284)
T 3g5u_A 1108 QLGIVSQEPIL-FDCSIAENIAYGDNSR-----------------VVSYEEIV----------RAAK-------EANIHQ 1152 (1284)
T ss_dssp SCEEEESSCCC-CSSBHHHHHTCCCSSC-----------------CCCHHHHH----------HHHH-------HHTCHH
T ss_pred ceEEECCCCcc-ccccHHHHHhccCCCC-----------------CCCHHHHH----------HHHH-------HhCcHH
Confidence 59999999976 5679999986431000 00000000 0000 000111
Q ss_pred Hhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 008771 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~ 317 (554)
.+..+ |++. .......+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.+++ .|+|+|+||||++
T Consensus 1153 ~i~~l~~gldt-~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1153 FIDSLPDKYNT-RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHSSTTTGGGC-BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred HHHhCcccccc-ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHH
Confidence 22222 2211 12334578999999999999999999999999999999999999999888753 4889999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
++.. ||||++|++|++. ..|++++++..
T Consensus 1232 ~i~~-~dri~vl~~G~i~-~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1232 TIQN-ADLIVVIQNGKVK-EHGTHQQLLAQ 1259 (1284)
T ss_dssp GGGS-CSEEEEEETBEEE-EEECHHHHHHS
T ss_pred HHHc-CCEEEEEECCEEE-EECCHHHHHhC
Confidence 9965 9999999999985 56888877654
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-37 Score=336.62 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=163.7
Q ss_pred EeEEEEeCC-eeeEEceeEEEECC-----CEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 101 ENISKSYKG-VTVLKDVTWEVKKG-----EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 101 ~~ls~~y~~-~~~l~~isl~i~~G-----e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
.+++++|++ ..+++++||++.+| |++||+|+||||||||+++|+|+++|++|+.. ....++|+||+....+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccC
Confidence 678889976 46899999999999 88999999999999999999999999999842 2357999999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+++...+. ........+.++++.+|+. +..+
T Consensus 427 ~~tv~e~~~~~~~-------------------------------------------~~~~~~~~~~~~l~~l~l~-~~~~ 462 (608)
T 3j16_B 427 PGTVRQLFFKKIR-------------------------------------------GQFLNPQFQTDVVKPLRID-DIID 462 (608)
T ss_dssp CSBHHHHHHHHCS-------------------------------------------STTTSHHHHHHTHHHHTST-TTSS
T ss_pred CccHHHHHHHHhh-------------------------------------------cccccHHHHHHHHHHcCCh-hhhc
Confidence 7899887632110 0001123456778888986 5679
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999888777643 58999999999999999999999998
Q ss_pred C--CeeeeccCChhHHHH
Q 008771 331 M--GVSRTYEGNYSQYVL 346 (554)
Q Consensus 331 ~--g~~~~~~G~~~~~~~ 346 (554)
+ |++ .+.|+..+.+.
T Consensus 543 ~~~g~~-~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKN-AHARAPESLLT 559 (608)
T ss_dssp EETTTE-EECCCCEEHHH
T ss_pred CCCCeE-EecCChHHHhh
Confidence 5 665 56677666554
No 59
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.4e-36 Score=340.82 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=140.7
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHH---ccCCC
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDV 307 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l---~~~g~ 307 (554)
+++..++. .|..+||....+++++.+|||||+|||+||++|+.+|+ +|||||||++||+...++|.+.| ++.|.
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 34566776 58899997555799999999999999999999999995 99999999999999999888865 56799
Q ss_pred eEEEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 008771 308 PMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (554)
Q Consensus 308 tvIiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (554)
|||+||||++++. .||+|++| ++|++ ++.|+++++....+... ...+ ..
T Consensus 433 TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~~-----------------~~~l---~~--- 487 (842)
T 2vf7_A 433 SLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQT-----------------GQYL---FA--- 487 (842)
T ss_dssp EEEEECCCHHHHT-TCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCHH-----------------HHHH---HT---
T ss_pred EEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEE-EEecCHHHHHhchHHHH-----------------HHHh---hh---
Confidence 9999999999885 69999999 45654 78899987654211000 0000 00
Q ss_pred chhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCC
Q 008771 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (554)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGs 461 (554)
..+.. +.....++.+|+++++++ ..|+++||+|++||++||+|+|||
T Consensus 488 --------------------~~~~~--------~~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGS 534 (842)
T 2vf7_A 488 --------------------DRHTE--------PHTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGS 534 (842)
T ss_dssp --------------------CCCCC--------CCCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTS
T ss_pred --------------------ccccc--------ccccCCCCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCc
Confidence 00000 000113467899999986 269999999999999999999999
Q ss_pred cHHHHHHH-HhCCC
Q 008771 462 GKSTLLKL-IMGLE 474 (554)
Q Consensus 462 GKSTLlk~-L~G~~ 474 (554)
|||||+++ |+|++
T Consensus 535 GKSTLl~~~L~g~l 548 (842)
T 2vf7_A 535 GKSTLVSQALVDAL 548 (842)
T ss_dssp SHHHHCCCCCHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999997 76543
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-35 Score=332.07 Aligned_cols=173 Identities=20% Similarity=0.305 Sum_probs=130.0
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
..+.|..+||.....++++.+|||||+|||+|||||+.+|+ +|||||||+|||+....+|.+.|+ +.|.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34578889997656789999999999999999999999887 999999999999999999988765 4689999999
Q ss_pred cCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHH
Q 008771 314 HDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (554)
||++++.. ||+|++| ++|++ .+.|+++++........ +..
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~~~----------------~~~---------------- 569 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDSSL----------------TGE---------------- 569 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTTCH----------------HHH----------------
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchhcc----------------hhh----------------
Confidence 99999975 9999999 67765 68899887654211000 000
Q ss_pred HHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHH
Q 008771 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL 467 (554)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLl 467 (554)
.+.. ... ...+...+.....+++++++ ...++++||+|+.||+++|+|+||||||||+
T Consensus 570 ------~l~~----~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 570 ------YLSG----KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ------HHHS----SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ------hhhc----ccc-------cccccccccccceEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 0000 000 00111111223346666664 2469999999999999999999999999997
No 61
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.6e-35 Score=335.08 Aligned_cols=179 Identities=21% Similarity=0.302 Sum_probs=136.2
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccC--CCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD--PDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPM 309 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~--p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tv 309 (554)
+..++ +.|..+||....+++++.+|||||+|||+||++|..+ |++|||||||++||+...++|.+.| ++.|.||
T Consensus 498 i~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 576 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL 576 (993)
T ss_dssp HHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 44555 4588899975557999999999999999999999999 5899999999999999999998775 4579999
Q ss_pred EEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Q 008771 310 VIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (554)
|+||||++++. .||+|++| ++|++ ++.|+++++........ ... +..
T Consensus 577 IvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~i-v~~G~~~e~~~~~~~lt-----------------~~~---l~g----- 629 (993)
T 2ygr_A 577 IVVEHDEDTIE-HADWIVDIGPGAGEHGGRI-VHSGPYDELLRNKDSIT-----------------GAY---LSG----- 629 (993)
T ss_dssp EEECCCHHHHH-TCSEEEEECSSSGGGCCSC-CEEECHHHHHHCTTCHH-----------------HHH---HHT-----
T ss_pred EEECCCHHHHH-hCCEEEEecCccccCCCEE-EEeeCHHHhhhhhHHHH-----------------HHH---hcc-----
Confidence 99999999986 69999999 45554 78999987765211000 000 000
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccCCCC-CC-CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCC
Q 008771 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGR-SG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (554)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGs 461 (554)
.... ..+.... .. .++|++++++. ..|+++||+|++||++||+|+|||
T Consensus 630 ------------------~~~~-------~~~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGS 679 (993)
T 2ygr_A 630 ------------------RESI-------EIPAIRRSVDPRRQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGS 679 (993)
T ss_dssp ------------------SSCC-------CCCSSCCCCCSSSEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTS
T ss_pred ------------------Cccc-------cCccccccCCCCceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCC
Confidence 0000 0011011 11 46899999873 369999999999999999999999
Q ss_pred cHHHHHHHHh
Q 008771 462 GKSTLLKLIM 471 (554)
Q Consensus 462 GKSTLlk~L~ 471 (554)
|||||+++|+
T Consensus 680 GKSTLl~~il 689 (993)
T 2ygr_A 680 GKSTLVNDIL 689 (993)
T ss_dssp SHHHHHTTTH
T ss_pred CHHHHHHHHH
Confidence 9999999853
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=5.7e-36 Score=339.28 Aligned_cols=180 Identities=19% Similarity=0.270 Sum_probs=136.9
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHH---ccCCCe
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~t 308 (554)
++..++ +.|..+||....+++++.+|||||+|||+||++|..+| ++|||||||++||+...++|.+.| ++.|.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 345555 45899999755679999999999999999999999985 999999999999999999988775 457999
Q ss_pred EEEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 008771 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (554)
||+||||++++. .||+|++| ++|++ ++.|+++++...... ..
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i-v~~G~~~e~~~~~~s------------------------------lt 606 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNS------------------------------LT 606 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSE-EEEECTTTTTTCTTC------------------------------TT
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEE-EEecCHHHHHhhhHH------------------------------HH
Confidence 999999999986 69999999 45654 788998876432100 00
Q ss_pred hhhHHHHHHHHHHHHhhhhccccccccceeeccCCC-CCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCC
Q 008771 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (554)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGs 461 (554)
++ .+.. ... ...+... ..+.++|++++++. ..|+++||+|++||++||+|+|||
T Consensus 607 ~~---------~l~g----~~~-------~~~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGS 661 (972)
T 2r6f_A 607 GQ---------YLSG----KKF-------IPIPAERRRPDGRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGS 661 (972)
T ss_dssp HH---------HHHT----SSC-------CCCCSSCCCCCSCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTS
T ss_pred HH---------HhcC----Ccc-------ccCccccccccceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCC
Confidence 00 0000 000 0011111 12346899999873 369999999999999999999999
Q ss_pred cHHHHHHHHh
Q 008771 462 GKSTLLKLIM 471 (554)
Q Consensus 462 GKSTLlk~L~ 471 (554)
|||||+++|+
T Consensus 662 GKSTLl~~ll 671 (972)
T 2r6f_A 662 GKSTLVNEVL 671 (972)
T ss_dssp SHHHHHTTTH
T ss_pred CHHHHHHHHH
Confidence 9999999854
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=8.3e-32 Score=303.03 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=91.8
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC---eEeecCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~---lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvI 310 (554)
.++.+.+..+|+.....++++.+|||||||||+|||||+.+|+ ||||||||++||+.+...+.++++ +.|.|||
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3456678889987656789999999999999999999999875 999999999999999988888764 4589999
Q ss_pred EEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHH
Q 008771 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~ 345 (554)
+||||++++. .||+|++| ++|++ .+.|+..+..
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i-~~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQI-VAVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEE-EEEECHHHHH
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEE-EEecCHHHHH
Confidence 9999999985 69999999 78887 5678777654
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=3e-30 Score=292.33 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=94.2
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccC---CCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvI 310 (554)
.++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+..++.|.++|+ +.|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999976556899999999999999999999996 79999999999999999998888764 4699999
Q ss_pred EEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++ .+||+|++| ++|++ .+.|++.++..
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~I-v~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRL-VAQGTPAEVAQ 827 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSE-EEEECHHHHTT
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEE-EEEcCHHHHHh
Confidence 999999999 689999999 57776 56787776543
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.6e-34 Score=303.43 Aligned_cols=195 Identities=12% Similarity=0.071 Sum_probs=157.8
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce-e-EEEcCC-CceEEEEecccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-N-VIKAKS-NMKIAFLSQEFE 171 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~-I~~~~~-~~~i~~v~Q~~~ 171 (554)
.++++++||++.|+ ++||+|++|++++|+||||||||||+|+|+|+++|++| + |.+++. ...++|+||++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45789999999995 79999999999999999999999999999999999999 9 999873 235899999985
Q ss_pred cc---cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 172 VS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 172 ~~---~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++ ...|+.+|+ .... .........++..++..+|+
T Consensus 190 l~~~~~~~tv~eni-~~~~-----------------------------------------~~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQS-----------------------------------------LTSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp EEECCSCCCTTCTT-CSCB-----------------------------------------CBSSCCSSCCBCCEECCCCS
T ss_pred hcccccccchhhhh-cccc-----------------------------------------cccCcchHHHHHHHHHHhCC
Confidence 43 345777665 2100 00000011234567888898
Q ss_pred CccccCCCCCCCChhHHHHHHHHHH--HccCCCe----EeecC-CCCCCCHHHHHHHHHHHccCCCeEEEEecCHH----
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKI--LLQDPDL----LLLDE-PTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---- 317 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAra--L~~~p~l----LlLDE-Pt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~---- 317 (554)
... .+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+. .+.|.+++++.+.|+|+|+||..
T Consensus 228 ~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~ 303 (460)
T 2npi_A 228 ERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLW 303 (460)
T ss_dssp SSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHH
T ss_pred Ccc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhh
Confidence 642 23 78999999999999999 9999999 99999 99999999 88888888888999999999987
Q ss_pred --HHHhhcce-----EEEee-CCeeeeccCChhH
Q 008771 318 --FLDQLCTK-----IVETE-MGVSRTYEGNYSQ 343 (554)
Q Consensus 318 --~l~~~~d~-----i~~l~-~g~~~~~~G~~~~ 343 (554)
++..+||+ |++|+ +|++. .|+..+
T Consensus 304 ~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 304 EKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred HHHHHHhcccccCCEEEEEeCCCcEE--ECCHHH
Confidence 88899999 99999 99875 676543
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=1.4e-29 Score=269.08 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=142.8
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--------------------------------------CCce
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--------------------------------------PDSG 152 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--------------------------------------p~~G 152 (554)
.+|++++|+|.+| +++|+|+||||||||+++|.++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5899999999999 999999999999999999977664 4478
Q ss_pred eEEEcCCCc-----------eEEEEecccccccCc-cHHHHHHHhhHH-----HHHHHHHHHHHHHHHhhccCc------
Q 008771 153 NVIKAKSNM-----------KIAFLSQEFEVSMSR-TVREEFMSAFKE-----EMEIAGKLERVQKALESAVDD------ 209 (554)
Q Consensus 153 ~I~~~~~~~-----------~i~~v~Q~~~~~~~~-tv~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------ 209 (554)
++.++|... .+++++|+..++... ..+-.+...+.. ..........+..........
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 888887543 289999987654321 111112111100 000001111111110000000
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc----------------------C-----
Q 008771 210 --------MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG----------------------D----- 254 (554)
Q Consensus 210 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~----------------------~----- 254 (554)
.+.+...+.+...............+...+.+.+..++++.... .
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 00000000111000000001112334566777788777653110 0
Q ss_pred --CCCCC-CChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEE
Q 008771 255 --RLVAS-FSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 255 --~~~~~-LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
+++.. |||||||||+||++|+.+| ++|||||||+|||+.++.+|.++|++ .|.|||+||||++++ .+||+|+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~ 366 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHY 366 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEE
Confidence 23333 6999999999999999999 99999999999999999999998875 379999999999887 5799999
Q ss_pred Ee----eCCeeee
Q 008771 328 ET----EMGVSRT 336 (554)
Q Consensus 328 ~l----~~g~~~~ 336 (554)
+| ++|++..
T Consensus 367 ~l~k~~~~G~~~~ 379 (415)
T 4aby_A 367 KVEKQVEDGRTVS 379 (415)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEeccCCceEE
Confidence 99 8888653
No 67
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=1.1e-31 Score=293.73 Aligned_cols=322 Identities=12% Similarity=0.086 Sum_probs=187.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeE-EEECCCEEEEECCCCccHHHHHHH--HHCCCCCCceeEEEcCCCc---------eEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRI--IAGQEEPDSGNVIKAKSNM---------KIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~--i~G~~~p~~G~I~~~~~~~---------~i~ 164 (554)
.++.+++.+.+++.++|++||| .|++|++++|+|+||||||||+++ ++|+++|++|.|++++.+. .+|
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 3555667665667889999999 999999999999999999999999 7899999999999887531 234
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++..... +. .+.... .....++++
T Consensus 92 ~~~q~~~~~~~------l~---------------------------------------------~~~~~~-~~~~~~~l~ 119 (525)
T 1tf7_A 92 WDLAKLVDEGK------LF---------------------------------------------ILDASP-DPEGQEVVG 119 (525)
T ss_dssp CCHHHHHHTTS------EE---------------------------------------------EEECCC-CSSCCSCCS
T ss_pred CChHHhhccCc------EE---------------------------------------------EEecCc-ccchhhhhc
Confidence 44443221000 00 000000 000011222
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCC-----CCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-----LDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l---~~~g~tvIiisHd~ 316 (554)
.+++. ...++.+..|||| +|++++|||||+. ||+..+..+.+++ ++.|.|||+|||++
T Consensus 120 ~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 120 GFDLS-ALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp SHHHH-HHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ccCHH-HHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 22221 1223334445555 5889999999985 5888887777765 44699999999999
Q ss_pred HHH---------HhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHH
Q 008771 317 AFL---------DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (554)
Q Consensus 317 ~~l---------~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (554)
+++ ..+||+|++|++|.. .|....++.. ..+. +....
T Consensus 186 ~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~~--------------------------~k~r-~~~~~---- 231 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLEI--------------------------LKLR-GTSHM---- 231 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEEE--------------------------EEET-TSCCC----
T ss_pred CCccccccccceeeeeeEEEEEEEEcc---CCceeEEEEE--------------------------EECC-CCCCC----
Confidence 884 566999999988532 1211100000 0000 00000
Q ss_pred HHHHHHHHHHhhhhccccccccceee-ccCCCCCCCceEEEeeeeEecCCccceec-eEEEEecCCEEEEECCCCCcHHH
Q 008771 388 AEKKLERLQEEEQIEKPFQRKQMKIR-FPERGRSGRSVVTIKNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKST 465 (554)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~y~~~~~l~~-vs~~i~~Ge~iaIvG~NGsGKST 465 (554)
....++.....-+. +|......++.++++++++.|++ |+. ++..|.+|++++|+|+|||||||
T Consensus 232 ------------~~~~~~~i~~~gi~v~p~~~~~~~~~~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKST 296 (525)
T 1tf7_A 232 ------------KGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTL 296 (525)
T ss_dssp ------------CSEEEEEEETTEEEECCTTTCCSCCCCCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHH
T ss_pred ------------CceEEEEEcCCCEEEEeccccccccccccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHH
Confidence 00000000000011 11111123445678888876643 222 24599999999999999999999
Q ss_pred HHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCC
Q 008771 466 LLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545 (554)
Q Consensus 466 Llk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LS 545 (554)
|++.|+|...|. |. .+ ..|.+|++. ..+.++.... .+...+ +..+|+. ...+++|..||
T Consensus 297 Ll~~l~g~~~~~-G~------~v-i~~~~ee~~------~~l~~~~~~~--g~~~~~----~~~~g~~-~~~~~~p~~LS 355 (525)
T 1tf7_A 297 LVSRFVENACAN-KE------RA-ILFAYEESR------AQLLRNAYSW--GMDFEE----MERQNLL-KIVCAYPESAG 355 (525)
T ss_dssp HHHHHHHHHHTT-TC------CE-EEEESSSCH------HHHHHHHHTT--SCCHHH----HHHTTSE-EECCCCGGGSC
T ss_pred HHHHHHHHHHhC-CC------CE-EEEEEeCCH------HHHHHHHHHc--CCCHHH----HHhCCCE-EEEEeccccCC
Confidence 999999998875 42 11 123455431 1233333211 122222 2234432 34567889999
Q ss_pred hhhhhcccC
Q 008771 546 GGEKIILLY 554 (554)
Q Consensus 546 GGek~Rl~l 554 (554)
|||+||+++
T Consensus 356 ~g~~q~~~~ 364 (525)
T 1tf7_A 356 LEDHLQIIK 364 (525)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999863
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=3.8e-29 Score=285.52 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=93.9
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC---CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvI 310 (554)
.++.++|..+||.....++++.+|||||||||+|||||+.+| +||||||||+|||+.+++.|.+.|+ +.|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 466788999999766678999999999999999999999876 6999999999999999999888764 4699999
Q ss_pred EEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++.. ||+|++| ++|++ ++.|+..+...
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~I-v~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYI-VATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEE-EEEESHHHHHS
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEE-EEEcCHHHHHh
Confidence 99999999965 9999999 77876 57788776543
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=2.3e-29 Score=285.34 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC---CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi 311 (554)
++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+..+..|.+.|+ +.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999755678999999999999999999999875 9999999999999999999888764 46999999
Q ss_pred EecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
||||++++ ..||+|++| ++|++ .+.|+..++..
T Consensus 904 isHdl~~i-~~aDrIivL~p~gG~~~G~I-v~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLGPEGGDRGGQI-VAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSTTSCCSE-EEEESHHHHHT
T ss_pred EcCCHHHH-HhCCEEEEEcCCCCCCCCEE-EEecCHHHHHh
Confidence 99999998 479999999 57776 56777776643
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=2.3e-29 Score=286.31 Aligned_cols=107 Identities=19% Similarity=0.297 Sum_probs=92.4
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC---CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi 311 (554)
++.++|..+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+..+..|.+.|+ +.|.|||+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999754678999999999999999999999875 9999999999999999999888764 46999999
Q ss_pred EecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
||||++++ ..||+|++| ++|++ .+.|++.++..
T Consensus 922 isHdl~~i-~~aDrIivL~p~gg~~~G~I-v~~G~~~el~~ 960 (993)
T 2ygr_A 922 IEHNLDVI-KTSDWIIDLGPEGGAGGGTV-VAQGTPEDVAA 960 (993)
T ss_dssp ECCCHHHH-TTCSEEEEEESSSTTSCSEE-EEEECHHHHHH
T ss_pred EcCCHHHH-HhCCEEEEECCCcCCCCCEE-EEecCHHHHHh
Confidence 99999998 579999999 56776 56788776543
No 71
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=3.6e-27 Score=246.27 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=74.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHc------cCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcc
Q 008771 254 DRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d 324 (554)
++++.+|||||||||+||+||+ .+|++|||||||++||+.++.++.+.|+ +.|.|||+||||++++ ..||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence 5788999999999999999999 7999999999999999999999988775 3589999999999985 6799
Q ss_pred eEEEeeCCeee
Q 008771 325 KIVETEMGVSR 335 (554)
Q Consensus 325 ~i~~l~~g~~~ 335 (554)
+|++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999863
No 72
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=1.8e-26 Score=231.22 Aligned_cols=131 Identities=27% Similarity=0.435 Sum_probs=111.9
Q ss_pred CceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
.++|+++|+++.|++ ..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 357999999999975 4599999999999999999999999999999999999999999999999765
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+ +..||.||+..... ... ...+..+|..+++. +..++++..|||||||||+|
T Consensus 85 ~ig~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 85 SIGIVFQDPDNQL-FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp SEEEECSSGGGTC-CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHH
T ss_pred cEEEEEcCccccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHH
Confidence 3789999975445 47899999976532 112 24578899999994 57899999999999999975
No 73
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.94 E-value=1.7e-26 Score=238.58 Aligned_cols=128 Identities=27% Similarity=0.448 Sum_probs=113.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPN 491 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~~ 491 (554)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 58999999999988899999999999999999999999999999999999999999999998765 268
Q ss_pred EEecccccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+++.+||.||+..+... .....+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 84 ~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 84 YLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp EECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred EEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 999986 588999999999876431 1134678899999995 57899999999999999975
No 74
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=2.6e-26 Score=223.74 Aligned_cols=129 Identities=29% Similarity=0.338 Sum_probs=111.1
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------- 488 (554)
+.|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 368999999999888899999999999999999999999999999999999999999999998654
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..... .. ..+.+..+|+.+++. +..++++..|||||||||+|
T Consensus 83 ~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 83 KLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHH
T ss_pred cEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 268999985 46678999999876421 11 124578899999995 56789999999999999975
No 75
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=2.2e-26 Score=225.90 Aligned_cols=129 Identities=29% Similarity=0.362 Sum_probs=109.2
Q ss_pred eEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+|+++|+++.|++ ..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3789999999963 3589999999999999999999999999999999999999999999998654
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc-----cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..+.. ... ...+..+|+.+++.....++++..|||||||||+|
T Consensus 81 ~~~~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred hhccEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence 278999986 47788899999976421 111 24577899999996544589999999999999975
No 76
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=3.7e-29 Score=240.93 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=98.1
Q ss_pred EeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc-------CCCceEEEEecccccccCccH
Q 008771 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------KSNMKIAFLSQEFEVSMSRTV 178 (554)
Q Consensus 106 ~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-------~~~~~i~~v~Q~~~~~~~~tv 178 (554)
+|+++.+|+|| ++||+++|+||||||||||+++|+|+ +|++|+|... .....|||+||++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46667789986 89999999999999999999999999 9999998431 0123588999876
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
.+|+........ ..+. .. ....++.++++. |+
T Consensus 76 ~enl~~~~~~~~----------~~~~------------------------~~---~~~~~~~~~l~~-gl---------- 107 (208)
T 3b85_A 76 NEKIDPYLRPLH----------DALR------------------------DM---VEPEVIPKLMEA-GI---------- 107 (208)
T ss_dssp ----CTTTHHHH----------HHHT------------------------TT---SCTTHHHHHHHT-TS----------
T ss_pred HHHHHHHHHHHH----------HHHH------------------------Hh---ccHHHHHHHHHh-CC----------
Confidence 333310000000 0000 00 001234444444 32
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
||||||+|||||+.+|++|||||||++ ++..+.++|++ .|.||| ||||++++.. +..+.+|.
T Consensus 108 ----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 108 ----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp ----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred ----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 999999999999999999999999999 77777777754 478999 9999987753 33345553
No 77
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=3.5e-26 Score=228.01 Aligned_cols=129 Identities=26% Similarity=0.337 Sum_probs=111.2
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------------
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~------------- 489 (554)
+.|+++|+++.|++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 4699999999998878999999999999999999999999999999999999999999999986542
Q ss_pred ----------EEEEecccccCCCCCCCHHHHHHhhc---ccCC----HHHHHHHHhhCCCChhh-hccccCcCChhhhhc
Q 008771 490 ----------PNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADM-LDRKVSLLSGGEKII 551 (554)
Q Consensus 490 ----------~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~l~~~~-~~~~~~~LSGGek~R 551 (554)
++|++|++ .+++..||.||+.... .... ...+..+|+.+++. +. .++++..||||||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHH
T ss_pred hhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHH
Confidence 68999985 4778889999997632 1112 24578899999996 45 799999999999999
Q ss_pred ccC
Q 008771 552 LLY 554 (554)
Q Consensus 552 l~l 554 (554)
|+|
T Consensus 162 v~l 164 (262)
T 1b0u_A 162 VSI 164 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 78
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.93 E-value=5.5e-26 Score=219.51 Aligned_cols=127 Identities=26% Similarity=0.394 Sum_probs=110.8
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEeccc
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~ 497 (554)
..|+++|+++.|++ .+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 46999999999988 899999999999999999999999999999999999999999999998664 478999986
Q ss_pred ccCCCCCCCHHHHHHhhcc----cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 498 AEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+++..||.||+..... ......+..+++.+++.. . ++++..|||||||||+|
T Consensus 88 --~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~l 144 (214)
T 1sgw_A 88 --IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQL 144 (214)
T ss_dssp --CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHH
T ss_pred --cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHH
Confidence 36677899999876421 123567889999999964 4 89999999999999874
No 79
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.93 E-value=4.1e-26 Score=237.29 Aligned_cols=128 Identities=29% Similarity=0.460 Sum_probs=113.1
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 48999999999988899999999999999999999999999999999999999999999998765 3789999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++.+||.||+..+.. ... ...+.++|+.+++. +..+++|..|||||||||+|
T Consensus 83 ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 83 SY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAI 144 (381)
T ss_dssp TC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHH
T ss_pred CC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHH
Confidence 86 58899999999977532 111 24678899999995 57899999999999999975
No 80
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=2.9e-26 Score=230.42 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=111.4
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------- 489 (554)
++++|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 456799999999998888999999999999999999999999999999999999999999999986543
Q ss_pred -EEEEecccccCCCCCCCHHHHHHhhcc-------cCC---HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 -~~y~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~---~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++...+.+..||.||+..+.. ... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 689999864334445799999976421 011 23578899999994 56899999999999999975
No 81
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=4.2e-26 Score=227.21 Aligned_cols=129 Identities=26% Similarity=0.377 Sum_probs=111.5
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~ 490 (554)
..|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 369999999999887899999999999999999999999999999999999999999999998654 26
Q ss_pred EEEecccccCCCCCCCHHHHHHhhc---ccCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.||+.... .... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 103 ~~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 103 GMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred EEEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHH
Confidence 8999985 4678889999997642 1122 24578899999995 56889999999999999975
No 82
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.93 E-value=7.2e-26 Score=226.08 Aligned_cols=130 Identities=28% Similarity=0.440 Sum_probs=113.4
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
.++|+++|+++.|+++.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 3589999999999988899999999999999999999999999999999999999999999998765 268
Q ss_pred EEecccccCCCCCCCHHHHHHhhcc----cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+.+..||.||+..... ......+..+|+.+++. +..++++..|||||||||+|
T Consensus 89 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~i 152 (266)
T 4g1u_C 89 VMRQYS--ELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQL 152 (266)
T ss_dssp EECSCC--CCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHH
T ss_pred EEecCC--ccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHH
Confidence 999985 35577899999987542 12245688899999995 46789999999999999975
No 83
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.93 E-value=7.5e-26 Score=233.85 Aligned_cols=132 Identities=28% Similarity=0.393 Sum_probs=114.6
Q ss_pred CCCceEEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eE
Q 008771 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LP 490 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~ 490 (554)
.|...|+++|+++.| ++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .+
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 456789999999999 777799999999999999999999999999999999999999999999998765 37
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.||+..... ... ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 90 g~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRval 156 (355)
T 1z47_A 90 GLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVAL 156 (355)
T ss_dssp EEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred EEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHH
Confidence 8999985 47889999999987532 112 24578899999994 57899999999999999975
No 84
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=6.1e-26 Score=223.42 Aligned_cols=130 Identities=25% Similarity=0.379 Sum_probs=110.6
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~ 490 (554)
.+.|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4579999999999888899999999999999999999999999999999999999999999998654 27
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc---cCC--HHHHHHHHhhCC-CChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE---DWR--IDDIKGLLGRCN-FKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~--~~~~~~~L~~~~-l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.||+..... ... ...+..+++.++ +. +..++++..|||||||||+|
T Consensus 84 ~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 84 ALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp EEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHH
T ss_pred EEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHH
Confidence 8999985 46678899999987531 111 235677888884 73 56789999999999999875
No 85
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2e-26 Score=236.84 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=75.5
Q ss_pred cCCCCCCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceE
Q 008771 253 GDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i 326 (554)
.++++..||||||||++||++|+ .+|++|||||||++||+...+.|.+++++ .+.|+|+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 56778899999999999999997 68999999999999999999999988754 3789999999975 45689987
Q ss_pred --EEeeCCeeeeccCChhH
Q 008771 327 --VETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 327 --~~l~~g~~~~~~G~~~~ 343 (554)
++|.+|...+...+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88889987666555443
No 86
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=9.7e-27 Score=217.22 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=99.2
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc-CccHHHHHHHhhHHHHHHH
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIA 193 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~-~~tv~e~~~~~~~~~~~~~ 193 (554)
||||+|++||+++|+|+||||||||++++.+-.. .+.. +.-.++++|++.... ..++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~-d~~~g~~~~~~~~~~~~~~~~~~~~---------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISS-DFCRGLMSDDENDQTVTGAAFDVLH---------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEH-HHHHHHHCSSTTCGGGHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEcc-HHHHHHhcCcccchhhHHHHHHHHH----------
Confidence 6899999999999999999999999998653221 1111 111256666543211 111111110
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
..... ....|... ..+ .....|||||||++||+|
T Consensus 64 -------------------------------------------~~~~~-~~~~g~~~-~~~-~~~~~s~g~~qrv~iAra 97 (171)
T 4gp7_A 64 -------------------------------------------YIVSK-RLQLGKLT-VVD-ATNVQESARKPLIEMAKD 97 (171)
T ss_dssp -------------------------------------------HHHHH-HHHTTCCE-EEE-SCCCSHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHH-HHhCCCeE-EEE-CCCCCHHHHHHHHHHHHH
Confidence 00000 11123322 112 234579999999999999
Q ss_pred HccCCCeEeecCCCCCCCHH----------------HHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceE
Q 008771 274 LLQDPDLLLLDEPTNHLDLD----------------TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~----------------~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i 326 (554)
++.+|++|+|||||++||+. ....+.+.++ +.|.|+|+||||++++.. ++++
T Consensus 98 l~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 98 YHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH-EEEE
T ss_pred cCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh-hhhc
Confidence 99999999999999999999 5577777753 348999999999999976 4443
No 87
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=6.8e-26 Score=234.22 Aligned_cols=132 Identities=27% Similarity=0.358 Sum_probs=112.0
Q ss_pred CCCceEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------
Q 008771 420 SGRSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------- 488 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------- 488 (554)
..+++|+++|+++.|+. ..+++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34568999999999963 3589999999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..+.. ... ...+.++|+.+|+. +..+++|.+|||||||||+|
T Consensus 100 ~~~~r~~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 100 LTKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHTTEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 278999986 47788999999986532 112 24578899999995 57899999999999999975
No 88
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.93 E-value=7.3e-26 Score=225.14 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=111.7
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~ 490 (554)
.+.|+++|+++.|++..+++++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .+
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3479999999999888899999999999999999999999999999999999999999999998654 26
Q ss_pred EEEecccccCCCCCCCHHHHHHhhccc---------------C-C---HHHHHHHHhhCCCChhhhccccCcCChhhhhc
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAED---------------W-R---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKII 551 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~---------------~-~---~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~R 551 (554)
+|++|++ .+++..||.||+...... . . ...+..+|+.+++. +..++++..||||||||
T Consensus 85 ~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 85 VRTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHH
T ss_pred EEEccCC--ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHH
Confidence 8999986 356778999999865311 1 1 23578899999995 56899999999999999
Q ss_pred ccC
Q 008771 552 LLY 554 (554)
Q Consensus 552 l~l 554 (554)
|+|
T Consensus 162 v~i 164 (257)
T 1g6h_A 162 VEI 164 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 89
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.93 E-value=1.5e-25 Score=232.06 Aligned_cols=128 Identities=27% Similarity=0.410 Sum_probs=112.4
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 48999999999888899999999999999999999999999999999999999999999998765 3789999
Q ss_pred ccccCCCCCCCHHHHHHhhccc--C----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+...... . ....+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 83 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRval 144 (359)
T 2yyz_A 83 NY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVAL 144 (359)
T ss_dssp SC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 85 477899999999876431 1 124578899999995 57899999999999999975
No 90
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.1e-25 Score=223.48 Aligned_cols=129 Identities=26% Similarity=0.337 Sum_probs=111.3
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~ 493 (554)
..|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 469999999999888899999999999999999999999999999999999999999999998654 37899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.||+..... ... ...+..+|..+++. +..++++..|||||||||+|
T Consensus 94 ~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 94 PEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLI 157 (256)
T ss_dssp CTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHH
T ss_pred cCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHH
Confidence 9986 36678899999876421 111 23578899999995 56899999999999999875
No 91
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.7e-25 Score=231.94 Aligned_cols=128 Identities=30% Similarity=0.397 Sum_probs=112.0
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 48999999999887899999999999999999999999999999999999999999999998765 3789999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+..+.. ... ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 83 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRval 144 (362)
T 2it1_A 83 NW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAI 144 (362)
T ss_dssp TC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHH
Confidence 85 47789999999987532 111 24578899999995 56899999999999999975
No 92
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=2.2e-25 Score=231.98 Aligned_cols=128 Identities=30% Similarity=0.467 Sum_probs=108.2
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 48999999999887899999999999999999999999999999999999999999999998765 3789999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++.+||.||+..+.. ... ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 91 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRval 152 (372)
T 1v43_A 91 SY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAV 152 (372)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 85 47789999999987642 112 23578899999994 57899999999999999975
No 93
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.92 E-value=2.1e-25 Score=230.20 Aligned_cols=126 Identities=26% Similarity=0.384 Sum_probs=111.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
|+++|+++.|++. +++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|+
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 7899999999887 99999999999999999999999999999999999999999999998765 36899998
Q ss_pred cccCCCCCCCHHHHHHhhcc---cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++.+||.||+..+.. ......+.++|+.+++. +..+++|..|||||||||+|
T Consensus 81 ~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRval 138 (348)
T 3d31_A 81 Y--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVAL 138 (348)
T ss_dssp C--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHH
T ss_pred c--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 5 47889999999987532 11226788999999995 56899999999999999975
No 94
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.92 E-value=2.4e-25 Score=230.58 Aligned_cols=128 Identities=24% Similarity=0.391 Sum_probs=111.8
Q ss_pred eEEEeeeeEecCCcc--ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~--~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
.|+++|+++.|++.. +++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 489999999998777 99999999999999999999999999999999999999999999998654
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhccc--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..+... .. ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 83 ~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRval 151 (353)
T 1oxx_K 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVAL 151 (353)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 268999985 477899999999876431 12 24578899999994 57899999999999999975
No 95
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=3.1e-26 Score=215.19 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=101.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEc----CCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKA----KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~----~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (554)
+++|+||||||||||+++|+|++... .|..... .....+||++|++. +.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~----------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI----------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT------CCEEE-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc------HHHHH-----------------
Confidence 68999999999999999999998521 2322110 11235788888751 11111
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc-cccCCCCCCCChhHHHHHHHHHH-----
Q 008771 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKI----- 273 (554)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~LAra----- 273 (554)
+..+++.. ...++++.+||||||||++||+|
T Consensus 59 -------------------------------------------~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~ 95 (178)
T 1ye8_A 59 -------------------------------------------FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95 (178)
T ss_dssp -------------------------------------------EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHhhcCCccccccccccCcCHHHHHHHHHHhhccccc
Confidence 01111111 24567788999999999999996
Q ss_pred HccCCCeEeecC--CCCCCCHHHHHHHHHHHccCCCeEEEEe---cCHHHHHhhcce
Q 008771 274 LLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMVIIS---HDRAFLDQLCTK 325 (554)
Q Consensus 274 L~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~g~tvIiis---Hd~~~l~~~~d~ 325 (554)
|+.+|++||||| ||++||+...+++.+.+.+.+.|+|++| ||+.++..+|++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999999999 9999999999999999988888788888 599999999998
No 96
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.92 E-value=4.2e-25 Score=220.70 Aligned_cols=130 Identities=25% Similarity=0.327 Sum_probs=110.4
Q ss_pred eEEEeeeeEecC--C---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEE
Q 008771 424 VVTIKNLEFGYE--D---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN 491 (554)
Q Consensus 424 ~l~~~~l~~~y~--~---~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~ 491 (554)
.|+++|+++.|+ + +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 488999999997 4 5699999999999999999999999999999999999999999999998764 378
Q ss_pred EEecccccCCCCCCCHHHHHHhhcc-----cCCHHHHHHHHhhCCCCh-hhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAE-----DWRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++.. +.+..||.||+..... ......+..+|..+++.. +..++++..|||||||||+|
T Consensus 82 ~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~l 149 (266)
T 2yz2_A 82 IAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAI 149 (266)
T ss_dssp EECSSGGG-GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHH
T ss_pred EEeccchh-hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHH
Confidence 99998633 3356899999986531 122456889999999962 56899999999999999975
No 97
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.92 E-value=4.4e-25 Score=230.00 Aligned_cols=128 Identities=26% Similarity=0.407 Sum_probs=111.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------e
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------L 489 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------------~ 489 (554)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 48999999999888899999999999999999999999999999999999999999999998654 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++ .+++.+||.||+..+.. ... ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 83 ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 83 IAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp EEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHH
T ss_pred EEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHH
Confidence 68999985 47789999999987532 112 24578899999994 57899999999999999975
No 98
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.91 E-value=1.1e-24 Score=215.26 Aligned_cols=127 Identities=26% Similarity=0.461 Sum_probs=104.7
Q ss_pred eEEEeeeeEec--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 424 ~l~~~~l~~~y--~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
-++++|+++.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 356799999999999999999999999999999999999999999999998654 268
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhh-----------ccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSGGek~Rl~l 554 (554)
|++|++. ++. .||.||+...........+..++..+++. +.+ ++++..|||||||||+|
T Consensus 87 ~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i 156 (247)
T 2ff7_A 87 VVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAI 156 (247)
T ss_dssp EECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH
T ss_pred EEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHH
Confidence 9999863 443 69999997754334455677777777763 233 34568999999999975
No 99
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=1.5e-24 Score=215.04 Aligned_cols=125 Identities=28% Similarity=0.536 Sum_probs=107.3
Q ss_pred eEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCC
Q 008771 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (554)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~ 502 (554)
.|+++|+++.|+ ++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.. .++|++|++ .++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~---~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ---SIGFVPQFF--SSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSCC--CCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec---cEEEEcCCC--ccC
Confidence 689999999998 77899999999999999999999999999999999999999999998532 478999986 355
Q ss_pred CCCCHHHHHHhhcc---c----CC---HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 503 LDKTVLETVAEAAE---D----WR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 503 ~~~tv~e~l~~~~~---~----~~---~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+..||.||+..... . .. ...+..+|..+++. +..++++..|||||||||+|
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILI 139 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHH
Confidence 67899999987531 1 11 24578899999995 56789999999999999975
No 100
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=1.2e-24 Score=213.89 Aligned_cols=124 Identities=27% Similarity=0.395 Sum_probs=106.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
++++|+++.|++ +++++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 689999999975 59999999999 99999999999999999999999999999999998664 36899998
Q ss_pred cccCCCCCCCHHHHHHhhcccC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.||+....... ....+.++|+.+++. +..++++..|||||||||+|
T Consensus 79 ~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 137 (240)
T 2onk_A 79 Y--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVAL 137 (240)
T ss_dssp C--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHH
T ss_pred C--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHH
Confidence 5 4677889999998753211 134578899999995 56789999999999999874
No 101
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=1.1e-24 Score=217.05 Aligned_cols=124 Identities=29% Similarity=0.459 Sum_probs=108.1
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEE-E
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN-Y 492 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~-y 492 (554)
|+++|+++.|++ +.+++++||+|. ||+++|+||||||||||+++|+|++ |++|+|.++|.++ .++ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 789999999976 679999999999 9999999999999999999999999 9999999998654 478 9
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++. + ..||.||+..... ......+..+|+.+++..+..++++..|||||||||+|
T Consensus 80 v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~l 139 (263)
T 2pjz_A 80 LPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRT 139 (263)
T ss_dssp CGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHH
T ss_pred eCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 999863 3 7899999976532 34456788999999996356899999999999999875
No 102
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.91 E-value=6.5e-25 Score=217.40 Aligned_cols=129 Identities=28% Similarity=0.333 Sum_probs=104.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCceee-----------E
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL-----------P 490 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~--~~p~~G~i~~~~~~~~-----------~ 490 (554)
.++++|+++.|++..+++++||+|.+||+++|+||||||||||+++|+|+ ++|++|+|.++|.++. +
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999888899999999999999999999999999999999998 7899999999987541 4
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc---c--CC----HHHHHHHHhhCCCChhhhccccCc-CChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE---D--WR----IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~---~--~~----~~~~~~~L~~~~l~~~~~~~~~~~-LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.+++..... . .. ...+..+|+.+++..+..++++.. |||||||||+|
T Consensus 83 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 83 FLAFQYP--VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp CCCCCCC--C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHH
T ss_pred EEeccCC--ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 6889986 36678899999865321 1 11 245778999999965668899999 99999999975
No 103
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.91 E-value=1.5e-24 Score=220.14 Aligned_cols=129 Identities=21% Similarity=0.367 Sum_probs=107.1
Q ss_pred ceEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
..|+++|++|.|+ +..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 3599999999995 46799999999999999999999999999999999999999999999999765 378
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCCh----------hhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .++ ..||.|||..+.......++...+..+++.. ..+++++..|||||||||+|
T Consensus 132 ~v~Q~~--~lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvai 201 (306)
T 3nh6_A 132 VVPQDT--VLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI 201 (306)
T ss_dssp EECSSC--CCC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred EEecCC--ccC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHH
Confidence 999986 343 5699999998765555666667766666532 12345668999999999975
No 104
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.91 E-value=2e-24 Score=215.80 Aligned_cols=131 Identities=27% Similarity=0.286 Sum_probs=108.1
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCcee-----------
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~--~~p~~G~i~~~~~~~----------- 488 (554)
.+.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+ ++|++|+|.++|.++
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4579999999999888899999999999999999999999999999999999 468999999998654
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhc-------c--cCC----HHHHHHHHhhCCCChhhhccccC-cCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAA-------E--DWR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~-------~--~~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+++.... . ... ...+..+|+.+++..+..++++. .|||||||||+|
T Consensus 98 ~i~~v~Q~~--~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 98 GIFMAFQYP--VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp TEEEECSSC--CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred CEEEEccCc--cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 167999986 4668889999986431 0 111 23577899999996556788887 599999999975
No 105
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.91 E-value=2e-24 Score=216.22 Aligned_cols=128 Identities=24% Similarity=0.405 Sum_probs=104.5
Q ss_pred ceEEEeeeeEecCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008771 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (554)
Q Consensus 423 ~~l~~~~l~~~y~~---~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~ 489 (554)
..|+++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999976 6799999999999999999999999999999999999999999999998765 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcccCCH-H---------HHHHHHhhC--CCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRI-D---------DIKGLLGRC--NFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~-~---------~~~~~L~~~--~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++. ++. .||.||+..+...... . .+..++..+ ++. +.+++++..|||||||||+|
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~l 167 (271)
T 2ixe_A 95 VAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVAL 167 (271)
T ss_dssp EEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHH
T ss_pred EEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHH
Confidence 689999863 444 5999999875432111 1 123456666 553 35688999999999999975
No 106
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.90 E-value=1.8e-24 Score=213.37 Aligned_cols=126 Identities=20% Similarity=0.403 Sum_probs=103.9
Q ss_pred EEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
|+++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 7899999999 566799999999999999999999999999999999999999999999998654 25799
Q ss_pred ecccccCCCCCCCHHHHHHhh-cccCCHHHHHHHHhhCCCChhhh-----------ccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSGGek~Rl~l 554 (554)
+|++. ++. .||.||+... ........+..++..+++.. .+ ++++..|||||||||+|
T Consensus 82 ~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSgGq~qrv~l 150 (243)
T 1mv5_A 82 SQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISGGQRQRLAI 150 (243)
T ss_dssp CCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred cCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcCCHHHHHHHHH
Confidence 99863 444 5999999765 23344556777788777642 22 34678999999999975
No 107
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=6.9e-24 Score=209.63 Aligned_cols=123 Identities=24% Similarity=0.373 Sum_probs=106.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
+++++|+++. .+++++||+|.+||+++|+||||||||||+++|+|+++|+ |+|.++|.++ .++|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 6899999986 5899999999999999999999999999999999999999 9999998764 26899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc-cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.||+..... ......+..+|..+++. +..++++..|||||||||+|
T Consensus 79 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~l 137 (249)
T 2qi9_C 79 SQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRL 137 (249)
T ss_dssp CSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHH
T ss_pred CCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 9986 36677899999986531 11356788999999994 56889999999999999875
No 108
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1.5e-27 Score=251.30 Aligned_cols=171 Identities=11% Similarity=0.106 Sum_probs=130.6
Q ss_pred eeeEEceeEEEECCC--------------------EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-eEEEEec
Q 008771 110 VTVLKDVTWEVKKGE--------------------KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQ 168 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge--------------------~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-~i~~v~Q 168 (554)
+.+|++|||+|++|+ ++||+|+||||||||+|+|+|+++|++|+|.+++.+. +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999999999999999887532 2378999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++ .++..|+.|+..... ...++.++++.+++
T Consensus 116 ~~-~~~~ltv~D~~g~~~------------------------------------------------~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS------------------------------------------------TNFPPDTYLEKMKF 146 (413)
T ss_dssp CS-SCTTEEEEECCCGGG------------------------------------------------SSCCHHHHHHHTTG
T ss_pred cc-ccCCeeehHhhcccc------------------------------------------------hHHHHHHHHHHcCC
Confidence 85 345667766532110 01134556677776
Q ss_pred CccccCCCCCCCChh--HHHHHHHHHHHcc----------CCCeEeecCCCCCCCHHHHHHHHHHHcc--------C---
Q 008771 249 TADDGDRLVASFSSG--WQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK--------Q--- 305 (554)
Q Consensus 249 ~~~~~~~~~~~LSGG--qrqRv~LAraL~~----------~p~lLlLDEPt~~LD~~~~~~l~~~l~~--------~--- 305 (554)
... +..+. |||| |+||++||++|+. +|++|||||||++||+..+..+.+.+++ .
T Consensus 147 ~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YEY--DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred Ccc--CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 432 23333 9999 9999999999999 9999999999999999877766554422 2
Q ss_pred -CCeEEEEecCHHH--HHhhcceEE-EeeCC
Q 008771 306 -DVPMVIISHDRAF--LDQLCTKIV-ETEMG 332 (554)
Q Consensus 306 -g~tvIiisHd~~~--l~~~~d~i~-~l~~g 332 (554)
..+|+++||++.. ++++||+|. .|..|
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 3578889999987 899999986 34444
No 109
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.90 E-value=1.1e-28 Score=249.82 Aligned_cols=207 Identities=13% Similarity=0.123 Sum_probs=141.0
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCeeeEEceeEEEECCCEEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~ 127 (554)
.+......+..++.+..+.+|+.+....+.+... .. .........|+++||+|.|+ .++|+++||+|++|++++
T Consensus 57 ~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~----~~-~~~~~~~~~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~va 130 (305)
T 2v9p_A 57 HVKDCATMVRHYLRAETQALSMPAYIKARCKLAT----GE-GSWKSILTFFNYQNIELITF-INALKLWLKGIPKKNCLA 130 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC----SS-CCTHHHHHHHHHTTCCHHHH-HHHHHHHHHTCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC----CC-CcccccCCeEEEEEEEEEcC-hhhhccceEEecCCCEEE
Confidence 3444444555566666666666655433322110 00 00001123589999999998 779999999999999999
Q ss_pred EECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHH-HHHHhhHHHHHHHHHHHHHHHHHhhc
Q 008771 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE-EFMSAFKEEMEIAGKLERVQKALESA 206 (554)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e-~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (554)
|+||||||||||+++|+|++ +|+|. +|++|++.++. .|+++ |+....
T Consensus 131 IvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~~lf~-~ti~~~ni~~~~-------------------- 178 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKSHFWL-ASLADTRAALVD-------------------- 178 (305)
T ss_dssp EECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTSGGGG-GGGTTCSCEEEE--------------------
T ss_pred EECCCCCcHHHHHHHHhhhc---CceEE--------EEecCcccccc-ccHHHHhhccCc--------------------
Confidence 99999999999999999999 89884 57788887654 47765 543210
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCC
Q 008771 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286 (554)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEP 286 (554)
+. ...+.+.++.+ ++. .++ ...|||||||| ||||+.+|+|||
T Consensus 179 --~~-------------------------~~~~~~~i~~~-L~~-gld--g~~LSgGqkQR---ARAll~~p~iLl---- 220 (305)
T 2v9p_A 179 --DA-------------------------THACWRYFDTY-LRN-ALD--GYPVSIDRKHK---AAVQIKAPPLLV---- 220 (305)
T ss_dssp --EE-------------------------CHHHHHHHHHT-TTG-GGG--TCCEECCCSSC---CCCEECCCCEEE----
T ss_pred --cc-------------------------cHHHHHHHHHH-hHc-cCC--ccCcCHHHHHH---HHHHhCCCCEEE----
Confidence 00 00111122221 111 112 57999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 287 t~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++||+.+...+.. +||++..+ ..||+| +|++|++ .+.|+..++
T Consensus 221 Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~i-v~~g~~~el 264 (305)
T 2v9p_A 221 TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQ-PFNITDADW 264 (305)
T ss_dssp EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---C-CCCCCHHHH
T ss_pred ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEE-EEeCCHHHH
Confidence 99999998877652 29998876 579999 9999987 577887665
No 110
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.90 E-value=1.7e-23 Score=204.42 Aligned_cols=124 Identities=24% Similarity=0.387 Sum_probs=98.6
Q ss_pred eEEEeeeeEecC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCC
Q 008771 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (554)
Q Consensus 424 ~l~~~~l~~~y~--~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l 501 (554)
.|+++|+++.|+ ++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. +
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~--~ 80 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCC--C
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCc--c
Confidence 689999999995 46799999999999999999999999999999999999999999999987 4789999863 4
Q ss_pred CCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 502 ~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
++ .||.||+..+.. .....+...+..+++... .+++++..|||||||||+|
T Consensus 81 ~~-~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~l 141 (229)
T 2pze_A 81 MP-GTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 141 (229)
T ss_dssp CS-BCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHH
T ss_pred cC-CCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 44 499999987532 222233444555554211 1234568999999999874
No 111
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=6.7e-24 Score=208.40 Aligned_cols=124 Identities=23% Similarity=0.366 Sum_probs=98.8
Q ss_pred eEEEeeeeEecC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCC
Q 008771 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (554)
Q Consensus 424 ~l~~~~l~~~y~--~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l 501 (554)
.|+++|+++.|+ ++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~--~ 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAW--I 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCC--C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCc--C
Confidence 489999999997 46799999999999999999999999999999999999999999999987 4789999862 4
Q ss_pred CCCCCHHHHHHhhcccCCHHHHHHHHhhCCCC------h----hhhccccCcCChhhhhcccC
Q 008771 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------A----DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 502 ~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~------~----~~~~~~~~~LSGGek~Rl~l 554 (554)
+..||.||+...... .......++..+++. + ..+++++..|||||||||+|
T Consensus 78 -~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~l 138 (237)
T 2cbz_A 78 -QNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSL 138 (237)
T ss_dssp -CSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHH
T ss_pred -CCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 578999999875421 111223333333321 1 12468899999999999975
No 112
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.90 E-value=1.4e-23 Score=209.02 Aligned_cols=128 Identities=22% Similarity=0.333 Sum_probs=104.4
Q ss_pred ceEEEeeeeEecCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008771 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (554)
Q Consensus 423 ~~l~~~~l~~~y~~---~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~ 489 (554)
..|+++|+++.|++ +.+++++||+|.+||+++|+||||||||||+++|+|+++| +|+|.++|.++ .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 35999999999975 3699999999999999999999999999999999999987 89999998655 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++. ++ ..||.||+..+.......++...+..+++... .+++++..|||||||||+|
T Consensus 95 i~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~l 166 (260)
T 2ghi_A 95 IGIVPQDTI--LF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAI 166 (260)
T ss_dssp EEEECSSCC--CC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHH
T ss_pred EEEEcCCCc--cc-ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHH
Confidence 689999863 44 46999999875433345567777877776321 1246789999999999975
No 113
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=6.3e-25 Score=223.18 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=133.8
Q ss_pred eCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------------eEEEEeccc
Q 008771 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEF 170 (554)
Q Consensus 107 y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------------~i~~v~Q~~ 170 (554)
|+....++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+. .|+|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 4433334678999999999999999999999999999999999999999877431 489999998
Q ss_pred c-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 171 E-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 171 ~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
. .++..|+.+++..+.. . ..+ ..+++.+|+.
T Consensus 164 ~~~~~~~~v~e~l~~~~~----------------------------------------~--~~d------~~lldt~gl~ 195 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE----------------------------------------E--GYD------VVLCDTSGRL 195 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH----------------------------------------T--TCS------EEEECCCCCS
T ss_pred CccCHHHHHHHHHHHHHH----------------------------------------c--CCc------chHHhcCCCC
Confidence 7 7777788887642100 0 000 1246677775
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHH
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAF 318 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisH---------d~~~ 318 (554)
+ ..++++.+|| +||++|||||+.+|+ +|+|| ||++||+... +.++-+..|.|+|++|| .++.
T Consensus 196 ~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 196 H-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp S-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred c-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 3 4466778899 999999999999999 99999 9999999755 33333456899999999 6778
Q ss_pred HHhhcceEEEeeCCee
Q 008771 319 LDQLCTKIVETEMGVS 334 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~ 334 (554)
+..+...|.++..|..
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 8888889999998853
No 114
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.88 E-value=4.5e-23 Score=215.82 Aligned_cols=126 Identities=20% Similarity=0.305 Sum_probs=108.3
Q ss_pred ceEEEeeeeEec--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y--~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
..|+++|+++.| ++..+++++||+|.+||+++|+|||||||||||++|+|+++ ++|+|.++|.++ .+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 459999999999 55679999999999999999999999999999999999998 899999998755 36
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCc-----------CChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSGGek~Rl~l 554 (554)
+|++|++ .+++ .||.+|+.... .....++..+|+.+++. +..+++|.. |||||||||+|
T Consensus 97 g~v~Q~~--~lf~-~tv~enl~~~~-~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 97 GVIPQKV--FIFS-GTFRKNLDPNA-AHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp EEESCCC--CCCS-EEHHHHHCTTC-CSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred EEEcCCc--ccCc-cCHHHHhhhcc-ccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHH
Confidence 8999986 3544 69999996432 34566788999999994 578889988 99999999975
No 115
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=8e-26 Score=217.45 Aligned_cols=174 Identities=10% Similarity=-0.012 Sum_probs=107.4
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC------CCceEEEEecccccccCccHHHHHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SNMKIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~------~~~~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
.++++| .+|++|++++|+||||||||||+|+|+|+++...+.+.+.+ ....++|+||++..++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 357787 79999999999999999999999999999963333222111 1124889999887665556555432
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH------hhhcCCCccccCCCC
Q 008771 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL------MPELGFTADDGDRLV 257 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgl~~~~~~~~~ 257 (554)
..... ..+ .... ........+++.+. ++.+|+. ...++++
T Consensus 87 ~~~~~--------------~~n----~~~~---------------g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~ 132 (207)
T 1znw_A 87 EWAEI--------------HGG----LHRS---------------GTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMP 132 (207)
T ss_dssp EEEEE--------------GGG----TEEE---------------EEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCT
T ss_pred eehhh--------------cCc----hhhc---------------CCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcC
Confidence 10000 000 0000 00011122333333 4444542 3345667
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCCC----CHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL----DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~L----D~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
..|| +|+.+|++++|||||+++ |+..+..+.++++ +.|.|+|+||||++++..+||+|++|
T Consensus 133 ~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 133 EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 7788 999999999999999998 6777777766543 35899999999999999999999988
Q ss_pred e
Q 008771 330 E 330 (554)
Q Consensus 330 ~ 330 (554)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 4
No 116
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.87 E-value=1.9e-21 Score=201.08 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=70.0
Q ss_pred ccCCCCCCCChhHHH------HHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 252 DGDRLVASFSSGWQM------RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 252 ~~~~~~~~LSGGqrq------Rv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
..++++.+||||||| |+++|++|+.+|++|||||||++||+..+..|.++|++ .+.|||+||||.+ +..+
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHh
Confidence 346788999999999 67888999999999999999999999999998887753 4779999999966 5578
Q ss_pred cceEEEee--CCee
Q 008771 323 CTKIVETE--MGVS 334 (554)
Q Consensus 323 ~d~i~~l~--~g~~ 334 (554)
||+|++|+ +|..
T Consensus 320 ~d~~~~l~~~~g~s 333 (339)
T 3qkt_A 320 ADHVIRISLENGSS 333 (339)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEecCCcc
Confidence 99999985 4543
No 117
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.87 E-value=3.1e-22 Score=221.45 Aligned_cols=128 Identities=23% Similarity=0.415 Sum_probs=107.9
Q ss_pred ceEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
..++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 46999999999974 6799999999999999999999999999999999999999999999999765 36
Q ss_pred EEEecccccCCCCCCCHHHHHHhhc-ccCCHHHHHHHHhhCCCChhhhc-----------cccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSGGek~Rl~l 554 (554)
+|++|++. ++ +.||.||+..+. +....+++.++++.+++. +.++ ++...||||||||++|
T Consensus 420 ~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~i 491 (582)
T 3b5x_A 420 ALVSQNVH--LF-NDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491 (582)
T ss_pred EEEcCCCc--cc-cccHHHHHhccCCCCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHH
Confidence 89999863 44 459999998765 445667788888888874 2333 4558999999999975
No 118
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.87 E-value=3.7e-22 Score=220.87 Aligned_cols=128 Identities=27% Similarity=0.393 Sum_probs=108.4
Q ss_pred ceEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
..++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 45999999999973 6799999999999999999999999999999999999999999999999765 36
Q ss_pred EEEecccccCCCCCCCHHHHHHhhc-ccCCHHHHHHHHhhCCCChhhhc-----------cccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSGGek~Rl~l 554 (554)
+|++|++. ++. .||.||+..+. +....+++.+.++.+++. +.++ ++...|||||||||+|
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i 491 (582)
T 3b60_A 420 ALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAI 491 (582)
T ss_dssp EEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred eEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 89999863 444 59999998765 445667788889888874 2333 3568999999999874
No 119
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=1e-23 Score=218.42 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=132.2
Q ss_pred EceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------------eEEEEecccc-cccCc
Q 008771 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFE-VSMSR 176 (554)
Q Consensus 114 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------------~i~~v~Q~~~-~~~~~ 176 (554)
..+||++++|++++|+|+||||||||++.|+|+++|++|+|.+.+.+. .|+|++|++. .++..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 568999999999999999999999999999999999999999876431 4899999987 77777
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
++.+++..+.. . ..+ ..+++.+|+.+ ..++.
T Consensus 228 tv~e~l~~~~~----------------------------------------~--~~d------~~lldt~Gl~~-~~~~~ 258 (359)
T 2og2_A 228 VLSKAVKRGKE----------------------------------------E--GYD------VVLCDTSGRLH-TNYSL 258 (359)
T ss_dssp HHHHHHHHHHH----------------------------------------T--TCS------EEEEECCCCSS-CCHHH
T ss_pred hHHHHHHHHHh----------------------------------------C--CCH------HHHHHhcCCCh-hhhhH
Confidence 88887642100 0 000 12466777753 34667
Q ss_pred CCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHHHHhhcce
Q 008771 257 VASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAFLDQLCTK 325 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisH---------d~~~l~~~~d~ 325 (554)
+.+|| +||++|||+|+.+|+ +|+|| ||++||+.... ..+-+..+.|+|++|| .++.+...+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 78899 999999999999999 99999 99999997653 3333456899999999 57778778889
Q ss_pred EEEeeCCe
Q 008771 326 IVETEMGV 333 (554)
Q Consensus 326 i~~l~~g~ 333 (554)
|.++..|.
T Consensus 333 I~~ig~Ge 340 (359)
T 2og2_A 333 VKFIGVGE 340 (359)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 99998885
No 120
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.86 E-value=6.7e-22 Score=219.37 Aligned_cols=127 Identities=31% Similarity=0.479 Sum_probs=106.2
Q ss_pred EEEeeeeEecCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 425 VTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 425 l~~~~l~~~y~~---~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
++++|++|.|++ ..+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 899999999974 3699999999999999999999999999999999999999999999999765 368
Q ss_pred EEecccccCCCCCCCHHHHHHhhccc---CCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++. ++ +.||.||+..+.+. ...+++.++++.+++... .+++++..|||||||||+|
T Consensus 422 ~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~i 494 (595)
T 2yl4_A 422 TVSQEPI--LF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494 (595)
T ss_dssp EECSSCC--CC-SSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHH
T ss_pred EEccCCc--cc-CCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 9999863 44 46999999876543 566778888988886321 1223458999999999974
No 121
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.86 E-value=2.4e-25 Score=227.20 Aligned_cols=180 Identities=8% Similarity=0.076 Sum_probs=129.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEE-----------------------EECCCEEEEECCCCccHHHHHHHHHCCCCCCc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWE-----------------------VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~-----------------------i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~ 151 (554)
...|+++||++.|+ ++++++++. +++|+++||+|+||||||||+++|+|+++|+.
T Consensus 41 ~~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 41 GEQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp TCCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CCeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 34589999999995 567777764 89999999999999999999999999999986
Q ss_pred eeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 152 G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
|. ..|+||+|+..+++. |+.+|+..... . ...
T Consensus 119 G~-------~~v~~v~qd~~~~~~-t~~e~~~~~~~-----------------~-----------------------g~~ 150 (312)
T 3aez_A 119 HH-------PRVDLVTTDGFLYPN-AELQRRNLMHR-----------------K-----------------------GFP 150 (312)
T ss_dssp TC-------CCEEEEEGGGGBCCH-HHHHHTTCTTC-----------------T-----------------------TSG
T ss_pred CC-------CeEEEEecCccCCcc-cHHHHHHHHHh-----------------c-----------------------CCC
Confidence 64 358999999887666 88887531100 0 000
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc-CCCeEE
Q 008771 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMV 310 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~g~tvI 310 (554)
.......+.++|+.++ . ...+..+..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+ .+ .+|
T Consensus 151 ~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D-~~I 222 (312)
T 3aez_A 151 ESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFD-FSL 222 (312)
T ss_dssp GGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCS-EEE
T ss_pred hHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcC-cEE
Confidence 0111234555666665 2 23346677999999999999999999999999999999998521 11222 33 457
Q ss_pred EEecCHHHHH-hhcceEEEeeCC
Q 008771 311 IISHDRAFLD-QLCTKIVETEMG 332 (554)
Q Consensus 311 iisHd~~~l~-~~~d~i~~l~~g 332 (554)
+|+|+.+... ..++|.+.+.++
T Consensus 223 ~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 223 YVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEECHHHHHHHHHHHHHHHTTT
T ss_pred EEECCHHHHHHHHHHHHHHHHhc
Confidence 8888886643 345666555554
No 122
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=6.7e-24 Score=225.98 Aligned_cols=173 Identities=13% Similarity=0.160 Sum_probs=134.9
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------- 160 (554)
+.++++++++.|+ +..+|+++ |+|.+|++++|+|+||||||||+++|+|+.+|++|.|.+.|.+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 5689999999997 67899999 9999999999999999999999999999999999999988762
Q ss_pred ----ceEEEEecc-cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 161 ----MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 161 ----~~i~~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
..|+|++|+ ...++..++.+|+..... . + ....
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae----------------------------~---~-------~~~~---- 246 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAE----------------------------D---F-------RDRG---- 246 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH----------------------------H---H-------HTTT----
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHH----------------------------H---H-------HhCC----
Confidence 258999995 444456677766542100 0 0 0000
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC-------CC-
Q 008771 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ-------DV- 307 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-------g~- 307 (554)
..++. ..+ .+..||+|| |||+|| +.+|++ |++||+.....+.+++.+. |.
T Consensus 247 ----~~v~~-------~ld-~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 247 ----QHVLL-------IMD-SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp ----CEEEE-------EEE-CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred ----CCHHH-------HHH-hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 00011 111 146799999 999999 888888 9999999999999888542 42
Q ss_pred ----eEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 308 ----PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 308 ----tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||+++|||++ ..+||++++|.+|++.
T Consensus 305 T~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ--DPIADSARAILDGHIV 334 (438)
T ss_dssp EEEEEEECSSSCSC--CHHHHHHHHHSSEEEE
T ss_pred cceeEEEEeCCCcc--chhhceEEEEeCcEEE
Confidence 8999999999 6789999999999874
No 123
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=2.4e-21 Score=200.90 Aligned_cols=84 Identities=18% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCCCC-CCChhHHHHHHHHHHHc---------cCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 008771 254 DRLVA-SFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 254 ~~~~~-~LSGGqrqRv~LAraL~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~ 323 (554)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.+.+.+.|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 55677 79999999999999999 8999999999999999999999999997766899999995 43 79
Q ss_pred ceEEEeeCCeeeeccCChh
Q 008771 324 TKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~ 342 (554)
|+|++|++|++. ..|+..
T Consensus 335 ~~i~~l~~G~i~-~~g~~~ 352 (359)
T 2o5v_A 335 ALTLRAQAGRFT-PVADEE 352 (359)
T ss_dssp SEEEEEETTEEE-ECCCTT
T ss_pred CEEEEEECCEEE-ecCCHH
Confidence 999999999974 456544
No 124
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.86 E-value=7.1e-22 Score=218.36 Aligned_cols=129 Identities=28% Similarity=0.389 Sum_probs=107.1
Q ss_pred ceEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
.-++++|++|.|++ .++++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999964 4699999999999999999999999999999999999999999999999765 37
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .++ +.||.||+..+.+....+++.+.++..++... .++++...|||||||||+|
T Consensus 418 ~~v~Q~~--~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~l 488 (578)
T 4a82_A 418 GLVQQDN--ILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488 (578)
T ss_dssp EEECSSC--CCC-SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred EEEeCCC--ccC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHH
Confidence 8999986 354 45999999887665666777777777765221 1234557999999999974
No 125
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=5.6e-25 Score=213.45 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=103.4
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEEecccccccCccHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v~Q~~~~~~~~tv~ 179 (554)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ +.+ ..++|++|++.+++..+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99988 432 2467888876543322100
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008771 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (554)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (554)
..+ ++.. .+.+ ...+ .....+.++++...+. ..+ .+
T Consensus 87 ~~~--------------------l~~~----~~~~-------------~~~g--~~~~~i~~~l~~~~~~--il~---~~ 122 (218)
T 1z6g_A 87 EDF--------------------LEYD----NYAN-------------NFYG--TLKSEYDKAKEQNKIC--LFE---MN 122 (218)
T ss_dssp TCE--------------------EEEE----EETT-------------EEEE--EEHHHHHHHHHTTCEE--EEE---EC
T ss_pred cch--------------------hhhh----hccc-------------ccCC--CcHHHHHHHHhCCCcE--EEE---ec
Confidence 000 0000 0000 0000 0112334444443321 111 47
Q ss_pred CChhHHHHHHH-----HHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----------CCCeEEEEecCHHHHHhhcc
Q 008771 260 FSSGWQMRMSL-----GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----------QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 260 LSGGqrqRv~L-----AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----------~g~tvIiisHd~~~l~~~~d 324 (554)
|||||+||++| +++|+.+|++++|||||+++|..+...+.+.+.. ...+.|+++||++.+...++
T Consensus 123 lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~ 202 (218)
T 1z6g_A 123 INGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLK 202 (218)
T ss_dssp HHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHH
Confidence 89999999999 8999999999999999999998776666555431 34567777777777776666
Q ss_pred eEEE
Q 008771 325 KIVE 328 (554)
Q Consensus 325 ~i~~ 328 (554)
+|+.
T Consensus 203 ~ii~ 206 (218)
T 1z6g_A 203 NYLL 206 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 126
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.86 E-value=8e-22 Score=198.96 Aligned_cols=122 Identities=24% Similarity=0.403 Sum_probs=84.8
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCC
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~ 502 (554)
..|+++|+++.+ +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++ .++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~--~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNS--WIM 111 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSC--CCC
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCC--ccC
Confidence 468999999864 4689999999999999999999999999999999999999999999987 478999986 344
Q ss_pred CCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 503 ~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
+ .||.||+. .. ......+...+..+++... .+++++..|||||||||+|
T Consensus 112 ~-~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~l 170 (290)
T 2bbs_A 112 P-GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170 (290)
T ss_dssp S-SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHH
T ss_pred c-ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHH
Confidence 4 49999998 43 2223334445555555211 1234468999999999874
No 127
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=5.7e-22 Score=219.92 Aligned_cols=128 Identities=23% Similarity=0.362 Sum_probs=106.9
Q ss_pred ceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 423 SVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 423 ~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
.-|+++|++|.|++ .++++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 35999999999964 5799999999999999999999999999999999999999999999999766 378
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccc-----------cCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK-----------VSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----------~~~LSGGek~Rl~l 554 (554)
|++|++ .++ +.||.||+..+.+....+++.+.++.+++. +.+++. ...||||||||++|
T Consensus 433 ~v~Q~~--~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~i 502 (598)
T 3qf4_B 433 IVLQDT--ILF-STTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAI 502 (598)
T ss_dssp EECTTC--CCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHH
T ss_pred EEeCCC--ccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHH
Confidence 999986 343 569999998765545556677888877763 233433 37999999999975
No 128
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.85 E-value=5.2e-21 Score=208.84 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=69.2
Q ss_pred CCCCCC-ChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 255 RLVASF-SSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 255 ~~~~~L-SGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|++ .|.|||+||||++++. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 567788 999999999999999999 99999999999999999988887753 2899999999999886 69999999
Q ss_pred eCC
Q 008771 330 EMG 332 (554)
Q Consensus 330 ~~g 332 (554)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
No 129
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=1.2e-21 Score=216.90 Aligned_cols=129 Identities=29% Similarity=0.371 Sum_probs=107.1
Q ss_pred ceEEEeeeeEecC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~--~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
..++++|++|.|+ ++++++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 4599999999995 35799999999999999999999999999999999999999999999999776 26
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCCh----------hhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++. ++ +.||+||+..+.+....+++...++..++.. ..+++++..||||||||++|
T Consensus 420 ~~v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 420 SAVPQETV--LF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp EEECSSCC--CC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred EEECCCCc--Cc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 89999863 43 4699999987765556666666666655421 13467789999999999975
No 130
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.85 E-value=2.6e-22 Score=232.88 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=118.2
Q ss_pred CccEEEEe-----EEEEe-CCeeeEEceeEEEEC-------CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc
Q 008771 95 SSGVKLEN-----ISKSY-KGVTVLKDVTWEVKK-------GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161 (554)
Q Consensus 95 ~~~i~~~~-----ls~~y-~~~~~l~~isl~i~~-------Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~ 161 (554)
.++|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||+| |++.+- .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----------h
Confidence 45699999 99999 667899999999987 999999999999999999999 998651 1
Q ss_pred eEE-EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 162 KIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 162 ~i~-~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
++| ||||+.. ..+|.+++.
T Consensus 817 qiG~~Vpq~~~---~l~v~d~I~--------------------------------------------------------- 836 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RLTPIDRVF--------------------------------------------------------- 836 (1022)
T ss_dssp TTTCCEESSEE---EECCCSBEE---------------------------------------------------------
T ss_pred heeEEeccCcC---CCCHHHHHH---------------------------------------------------------
Confidence 345 9999863 334443321
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHH-HHH---HHHHHcc-CCCeEEEEecC
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEW---LEGYLGK-QDVPMVIISHD 315 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~-~~~---l~~~l~~-~g~tvIiisHd 315 (554)
..+|+. +...+..+++|+++++ +++|++++.+|+++||||||+|+|+.. ... +.+.+.+ .|.++|++||+
T Consensus 837 ---~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 837 ---TRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ---EECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred ---HHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 122322 1223344678888775 999999999999999999999999875 332 3344444 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeee
Q 008771 316 RAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~ 335 (554)
++++..+||+++++. |++.
T Consensus 912 ~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEEE-EEEE
T ss_pred HHHHHHhCCcceeec-CeEE
Confidence 999999999998874 5553
No 131
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=4e-23 Score=212.63 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=106.3
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHH
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~ 179 (554)
+++++| | .++++++||.|++|++++|+|+||||||||+++|+|+++|++|.|.++|... ..+....
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--------~~~~~~~--- 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--------IVFKHHK--- 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--------CCCSSCS---
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--------cccccch---
Confidence 445555 5 3489999999999999999999999999999999999999999999986431 0000000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008771 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (554)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (554)
..+++ +..
T Consensus 217 ----------------------------------------------------------------~~i~~--------~~g 224 (330)
T 2pt7_A 217 ----------------------------------------------------------------NYTQL--------FFG 224 (330)
T ss_dssp ----------------------------------------------------------------SEEEE--------ECB
T ss_pred ----------------------------------------------------------------hEEEE--------EeC
Confidence 00000 001
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
|||+||++||+||..+|++|||||||+. +..+.| +.+...+.|+|+++|+.+ +...||||++|.+|.
T Consensus 225 --gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 --GNITSADCLKSCLRMRPDRIILGELRSS---EAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp --TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred --CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 8999999999999999999999999982 333333 333333458999999999 557899999998774
No 132
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.83 E-value=2.9e-22 Score=207.18 Aligned_cols=174 Identities=15% Similarity=0.198 Sum_probs=124.7
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------------
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------- 161 (554)
+.++++++++.|+ +..+++++ |+|.+|++++|+|+||||||||+++|+|+..|+.|.|.+.|.+.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4589999999997 67899999 99999999999999999999999999999999999988766431
Q ss_pred ----eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 162 ----~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
.+.+++|... +..+.+...+ ..+
T Consensus 123 ~~~~~v~~~~~~~~-----~~~~r~~~~~--------------~~~---------------------------------- 149 (347)
T 2obl_A 123 TLSKCVLVVTTSDR-----PALERMKAAF--------------TAT---------------------------------- 149 (347)
T ss_dssp HHTTEEEEEECTTS-----CHHHHHHHHH--------------HHH----------------------------------
T ss_pred hhhceEEEEECCCC-----CHHHHHHHHH--------------HHH----------------------------------
Confidence 2444444211 1111110000 000
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc-----CCC-----
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDV----- 307 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~g~----- 307 (554)
.+.+.+...|-.-...-..+..||+|| |||++| +.+|++ |+|||+.....+.+++.+ .|.
T Consensus 150 ~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 150 TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 000000001100001113467899999 899999 688887 999999999999988854 255
Q ss_pred eEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 308 PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 308 tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||+++|||++ ..+||+++.|.+|+++
T Consensus 220 tVl~~thdl~--~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 220 TVLLESDNVN--DPIGDEVRSILDGHIV 245 (347)
T ss_dssp EEECCSSCCC--CHHHHHHHHHCSEEEE
T ss_pred EEEEeCCCCC--ChhhhheEEeeCcEEE
Confidence 8999999999 6789999999999874
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=5.5e-23 Score=205.72 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=89.7
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (554)
.++||||||||||||+|+|+|+..|++|+|.++|.+ ..++|++|++.+++.+||.|++..+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~---------- 73 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ---------- 73 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh----------
Confidence 479999999999999999999999999999987743 369999999988888899887643210
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccC
Q 008771 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (554)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 277 (554)
... ....+.+.+++. ....++.+.+|||||+||++||||++.
T Consensus 74 ---------~~~-----------------------~~~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~- 115 (270)
T 3sop_A 74 ---------INN-----------------------ENCWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC- 115 (270)
T ss_dssp ---------SBC-----------------------TTCSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE-
T ss_pred ---------ccc-----------------------HHHHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee-
Confidence 000 000000111111 011233346899999999999999886
Q ss_pred CCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 008771 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 278 p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l 319 (554)
+++||||+.+||+...+.+. .|++. .++|+|.|..+.+
T Consensus 116 --lllldep~~gL~~lD~~~l~-~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 116 --LYFISPTGHSLRPLDLEFMK-HLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp --EEEECCCSSSCCHHHHHHHH-HHHTT-SEEEEEETTGGGS
T ss_pred --eEEEecCCCcCCHHHHHHHH-HHHhc-CcEEEEEeccccC
Confidence 99999999999998865554 45455 8999998875443
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=1.3e-21 Score=213.87 Aligned_cols=168 Identities=11% Similarity=0.099 Sum_probs=120.5
Q ss_pred EEEEeEEEEeCCeeeEEce-eEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 98 VKLENISKSYKGVTVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~i-sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
++++++++.|++ |+.+ +..|.+|++++|+|+||||||||+++|+|...|. |+ ..+.|++|++..
T Consensus 258 ~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------~vi~~~~ee~~~---- 322 (525)
T 1tf7_A 258 SSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------RAILFAYEESRA---- 322 (525)
T ss_dssp CCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------CEEEEESSSCHH----
T ss_pred cccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------CEEEEEEeCCHH----
Confidence 455566544432 2222 4589999999999999999999999999998875 43 114566666421
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
.+..+.. .++. ..+ + +...|+. ...++.
T Consensus 323 ~l~~~~~---------------------------------------------~~g~-~~~----~-~~~~g~~-~~~~~~ 350 (525)
T 1tf7_A 323 QLLRNAY---------------------------------------------SWGM-DFE----E-MERQNLL-KIVCAY 350 (525)
T ss_dssp HHHHHHH---------------------------------------------TTSC-CHH----H-HHHTTSE-EECCCC
T ss_pred HHHHHHH---------------------------------------------HcCC-CHH----H-HHhCCCE-EEEEec
Confidence 1111100 0000 011 1 1123332 344677
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHH-----HHHHHHHH---HccCCCeEEEEecCH----------HH
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-----TIEWLEGY---LGKQDVPMVIISHDR----------AF 318 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~-----~~~~l~~~---l~~~g~tvIiisHd~----------~~ 318 (554)
+.+|||||+||+++|+++..+|++||+| ||++||.. .++.+.++ +++.|.|+|+|||+. .+
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~ 429 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSH 429 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSC
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcc
Confidence 8899999999999999999999999999 99999998 77766554 456799999999999 78
Q ss_pred HHhhcceEEEeeCCe
Q 008771 319 LDQLCTKIVETEMGV 333 (554)
Q Consensus 319 l~~~~d~i~~l~~g~ 333 (554)
+..+||+|++|+.|.
T Consensus 430 l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 430 ISTITDTIILLQYVE 444 (525)
T ss_dssp CTTTCSEEEEEEEEE
T ss_pred cceeeeEEEEEEEEE
Confidence 888999999998875
No 135
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.81 E-value=1e-20 Score=213.49 Aligned_cols=147 Identities=20% Similarity=0.182 Sum_probs=113.3
Q ss_pred CccEEEEeEEEEe---CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCCceEEEEeccc
Q 008771 95 SSGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 95 ~~~i~~~~ls~~y---~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
...|.+++...-+ ++..+++|+||+ |++++|+||||||||||+|+|+|+.. ++.|.+... ....+++++|
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~-- 621 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG-- 621 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE--
T ss_pred CCcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH--
Confidence 3458888875433 346799999999 99999999999999999999999874 678875422 2345777776
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
++...++.+++.
T Consensus 622 -i~~~~~~~d~l~------------------------------------------------------------------- 633 (765)
T 1ewq_A 622 -IYTRIGASDDLA------------------------------------------------------------------- 633 (765)
T ss_dssp -EEEECCC------------------------------------------------------------------------
T ss_pred -hhccCCHHHHHH-------------------------------------------------------------------
Confidence 233344444321
Q ss_pred cccCCCCCCCChhHHHHHHHHHHH--ccCCCeEeecCC---CCCCCHHHHH-HHHHHHccCCCeEEEEecCHHHHHhhc
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEP---TNHLDLDTIE-WLEGYLGKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL--~~~p~lLlLDEP---t~~LD~~~~~-~l~~~l~~~g~tvIiisHd~~~l~~~~ 323 (554)
..+|+|+++++.+|+++ +.+|+++||||| |++||..+.. .+.+.|.+.|.|+|++|||.++.. +|
T Consensus 634 -------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 634 -------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp --------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred -------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 24799999999999999 999999999999 9999998864 577877767899999999998874 44
No 136
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.80 E-value=4.7e-21 Score=194.19 Aligned_cols=180 Identities=22% Similarity=0.155 Sum_probs=109.9
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce-eEEEcCCCceEEEEecccccccCccHHHHHHHhhHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (554)
.++|+++++.|++|++++|+|+||||||||++.|+|...|++| .|.+ +..+. +..+ +...
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~---------~~~e~------~~~~-~~~r--- 82 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL---------AMLEE------SVEE-TAED--- 82 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE---------EESSS------CHHH-HHHH---
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE---------EeCcC------CHHH-HHHH---
Confidence 3579999999999999999999999999999999999998877 5543 22221 1111 1000
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH-HHH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW-QMR 267 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq-rqR 267 (554)
+...... . +......+ . .. .+...+....+..+++..++. ....+..+|.++ +||
T Consensus 83 ----------~~~~~~~-~-~~~~~~~l-~-~~-------~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~ 138 (296)
T 1cr0_A 83 ----------LIGLHNR-V-RLRQSDSL-K-RE-------IIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAK 138 (296)
T ss_dssp ----------HHHHHTT-C-CGGGCHHH-H-HH-------HHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHH
T ss_pred ----------HHHHHcC-C-Chhhcccc-c-cC-------CCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHH
Confidence 0000000 0 00000000 0 00 001112233445555443331 223346789999 666
Q ss_pred HHHHHHHccCCCeEeecCCCC---C---CCH-HHHHHHHHHH----ccCCCeEEEEecCH--H-----------------
Q 008771 268 MSLGKILLQDPDLLLLDEPTN---H---LDL-DTIEWLEGYL----GKQDVPMVIISHDR--A----------------- 317 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~---~---LD~-~~~~~l~~~l----~~~g~tvIiisHd~--~----------------- 317 (554)
+. |+++..+|++||+||||+ + +|. .....+.+.| ++.|.|||++||+. +
T Consensus 139 ~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~ 217 (296)
T 1cr0_A 139 LA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLR 217 (296)
T ss_dssp HH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC
T ss_pred HH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhc
Confidence 66 999999999999999999 4 454 4445555544 34699999999994 5
Q ss_pred ---HHHhhcceEEEeeCCe
Q 008771 318 ---FLDQLCTKIVETEMGV 333 (554)
Q Consensus 318 ---~l~~~~d~i~~l~~g~ 333 (554)
.+.++||+|++|+.|.
T Consensus 218 ~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 218 GSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ---CHHHHCSEEEEEEEC-
T ss_pred ccHHhHhhCcEEEEEecCc
Confidence 7788999999998875
No 137
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=8.4e-21 Score=187.19 Aligned_cols=166 Identities=10% Similarity=0.075 Sum_probs=101.3
Q ss_pred CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhH
Q 008771 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (554)
Q Consensus 108 ~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~ 187 (554)
+++++|+|+||++++|+++||+|+||||||||+++|+|++ |.+.++.....++|++|+. ++...|+.+++.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-CccccCHhHhhhhhcc
Confidence 5667999999999999999999999999999999999976 4443332234689999995 5566788876532100
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHH
Q 008771 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (554)
. ....+. .......+.+.|+.+. ...++.+..||+||+||
T Consensus 85 ---------------~-~~~~~~---------------------~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r 124 (245)
T 2jeo_A 85 ---------------Q-YNFDHP---------------------DAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSR 124 (245)
T ss_dssp ---------------C-CCTTSG---------------------GGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEE
T ss_pred ---------------C-CCCCCc---------------------ccccHHHHHHHHHHHH---CCCCeecccccccccCc
Confidence 0 000000 0000112223333321 12355678999999999
Q ss_pred HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecC-HHHHHhhcceE
Q 008771 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD-RAFLDQLCTKI 326 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd-~~~l~~~~d~i 326 (554)
+++ ++++.+|+++|||||...+|.. +.+ -.+.+|+++||+ ......+++++
T Consensus 125 ~~~-~~~~~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 125 LPE-TTVVYPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp CSS-CEEECCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCc-eEEecCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 988 6888999999999999888864 222 248899999997 44445555545
No 138
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.80 E-value=1.1e-21 Score=195.27 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=107.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEcCCCceEEEEecccccccCc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+ ++|++|+...+.
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~v-- 75 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSIV-- 75 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSEE--
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCcceee--
Confidence 456666642 5899999 8999999999999999999999999999998 9999988754 345555421100
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
. . ..+|+..
T Consensus 76 ------------------------------------------------------~-q----------~~~gl~~------ 84 (261)
T 2eyu_A 76 ------------------------------------------------------N-Q----------REVGEDT------ 84 (261)
T ss_dssp ------------------------------------------------------E-E----------EEBTTTB------
T ss_pred ------------------------------------------------------e-H----------HHhCCCH------
Confidence 0 0 1234321
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
..| |++||++|..+|++||||||| |+.+...+.+.. ..|.+|++++|+.+ +..+|||++.|..
T Consensus 85 -~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 85 -KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 223 899999999999999999999 998877666554 45899999999988 4578999887754
No 139
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.79 E-value=3.2e-21 Score=182.59 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=102.8
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC--------CceEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~--------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
|++++|+|+||||||||+++|+|+++ ++| |.++|. ...+||++|+..- ..+ +
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g--~~~---~------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG--TRG---P------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS--CEE---E-------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc--cee---h-------------
Confidence 78999999999999999999999998 899 877652 2358899887511 100 0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc------cccCCCCCCCChhHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA------DDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~------~~~~~~~~~LSGGqrqRv 268 (554)
+..+++.. ....++...+|+|||+++
T Consensus 61 ------------------------------------------------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 61 ------------------------------------------------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp ------------------------------------------------EEECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred ------------------------------------------------hhcccccCCccccccccceEEEcchHHHHHHH
Confidence 11111111 122344557999999988
Q ss_pred -HHHH---HHccCCCeEeecC--CCCCCCHHHHHHHHHHHccCCCeEE---EEecCH--HHHHhhcceEEEeeCCeeeec
Q 008771 269 -SLGK---ILLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMV---IISHDR--AFLDQLCTKIVETEMGVSRTY 337 (554)
Q Consensus 269 -~LAr---aL~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~g~tvI---iisHd~--~~l~~~~d~i~~l~~g~~~~~ 337 (554)
+|++ |++.+|++||||| |++.+|....+.|.+++++...+|| .||||+ .|+++++ .+++|+++..
T Consensus 93 ~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~ 168 (189)
T 2i3b_A 93 PVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIR----NRKDVKVFNV 168 (189)
T ss_dssp TTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEEC
T ss_pred HHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHe----ecCCcEEEEe
Confidence 4454 6899999999999 9999999999999999987644442 445997 5555444 4455554432
Q ss_pred -cCChh
Q 008771 338 -EGNYS 342 (554)
Q Consensus 338 -~G~~~ 342 (554)
..|.+
T Consensus 169 ~~~nr~ 174 (189)
T 2i3b_A 169 TKENRN 174 (189)
T ss_dssp CSSSGG
T ss_pred ChHhHH
Confidence 24544
No 140
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.79 E-value=7.4e-19 Score=187.48 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=66.4
Q ss_pred CCCCCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEE
Q 008771 255 RLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.+++++ .+.++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 58999999999999999999999998864 367999999998776 5799999
Q ss_pred Eee
Q 008771 328 ETE 330 (554)
Q Consensus 328 ~l~ 330 (554)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 141
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.78 E-value=2.4e-19 Score=205.68 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=107.5
Q ss_pred ccEEEEeEEEEe-----CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHH--------HCCCCCCceeEEEcCCCce
Q 008771 96 SGVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII--------AGQEEPDSGNVIKAKSNMK 162 (554)
Q Consensus 96 ~~i~~~~ls~~y-----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i--------~G~~~p~~G~I~~~~~~~~ 162 (554)
..|.+++...-+ ++..+++|++|++.+|++++|+||||||||||||+| .|.+.|..+..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 347777765444 234689999999999999999999999999999999 66655543321
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++++. .+
T Consensus 702 ~~~~d-------------------------------------------------------------------------~i 708 (934)
T 3thx_A 702 VSIVD-------------------------------------------------------------------------CI 708 (934)
T ss_dssp EECCS-------------------------------------------------------------------------EE
T ss_pred chHHH-------------------------------------------------------------------------HH
Confidence 11110 01
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHH--ccCCCeEeecCCCCCCCHHHHHHH----HHHHcc-CCCeEEEEecC
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEPTNHLDLDTIEWL----EGYLGK-QDVPMVIISHD 315 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL--~~~p~lLlLDEPt~~LD~~~~~~l----~~~l~~-~g~tvIiisHd 315 (554)
+..+|+. +.....+|+|+.+++.+|+++ +.+|+++||||||+|||+.....+ .+.+.+ .|.++|++||+
T Consensus 709 ~~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 709 LARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp EEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred HHhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 2222322 122346788888888888888 999999999999999999765444 344543 58999999999
Q ss_pred HHHHHhhcceEEEeeCCee
Q 008771 316 RAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~ 334 (554)
.++. .+||++..+.+|++
T Consensus 785 ~el~-~lad~~~~v~ng~v 802 (934)
T 3thx_A 785 HELT-ALANQIPTVNNLHV 802 (934)
T ss_dssp GGGG-GGGGTCTTEEEEEE
T ss_pred HHHH-HHhcccceeEeeEE
Confidence 7765 68999888887765
No 142
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.78 E-value=2.8e-19 Score=162.34 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.4
Q ss_pred cCCCCCCCChhHHHHHHHH------HHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 253 GDRLVASFSSGWQMRMSLG------KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LA------raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
.++++.+||||||||++|| |||+.+|++|||||||++||+.++.++.+.+++ .|.|||+||||++ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4678999999999999876 899999999999999999999999999988754 3789999999995 56799
Q ss_pred ceEEEe--eCCee
Q 008771 324 TKIVET--EMGVS 334 (554)
Q Consensus 324 d~i~~l--~~g~~ 334 (554)
|+|++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 46654
No 143
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=2.8e-20 Score=180.46 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=46.9
Q ss_pred CChhHH-HHHHHHHHHcc-------CCCeEeecCCCCCCCHH----------------HHHHHHHHHccCCCeEEEEec-
Q 008771 260 FSSGWQ-MRMSLGKILLQ-------DPDLLLLDEPTNHLDLD----------------TIEWLEGYLGKQDVPMVIISH- 314 (554)
Q Consensus 260 LSGGqr-qRv~LAraL~~-------~p~lLlLDEPt~~LD~~----------------~~~~l~~~l~~~g~tvIiisH- 314 (554)
++++++ +.+..+..++. +|++|+|||||++||+. ....|.++.++.|.|||+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 344443 33555555544 99999999999999983 122233334456999999999
Q ss_pred ---CHHHHHhhcceEEEeeCC
Q 008771 315 ---DRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 315 ---d~~~l~~~~d~i~~l~~g 332 (554)
+-..+..+||++++|++|
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 555699999999999875
No 144
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.77 E-value=1.4e-19 Score=207.17 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=99.7
Q ss_pred cEEEEeEEEEe-------CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEEcCCCceEEEEec
Q 008771 97 GVKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSNMKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y-------~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~~~~~~i~~v~Q 168 (554)
.|.+++...-+ ++..+++||||++++|++++|+||||||||||||+|+++.-. ..|.. +......++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~~i~~~d- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEATIGIVD- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEEEEECCS-
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhhhhhHHH-
Confidence 46777665433 245799999999999999999999999999999999754211 01100 000000111111
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
.++..+|+
T Consensus 718 ------------------------------------------------------------------------~i~~~ig~ 725 (918)
T 3thx_B 718 ------------------------------------------------------------------------GIFTRMGA 725 (918)
T ss_dssp ------------------------------------------------------------------------EEEEEC--
T ss_pred ------------------------------------------------------------------------HHHHhCCh
Confidence 01122222
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHH----HHH-ccCCCeEEEEecCHHHHHhhc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE----GYL-GKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~----~~l-~~~g~tvIiisHd~~~l~~~~ 323 (554)
. +...+..+++|+||+|++.|+++ +.+|++|||||||+|||+.....+. +.+ ++.|.|+|++|||++++ .+|
T Consensus 726 ~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~ 802 (918)
T 3thx_B 726 A-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELE 802 (918)
T ss_dssp ---------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHH
T ss_pred H-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHH
Confidence 1 12234457899999999999999 8999999999999999998665543 334 34689999999998776 355
Q ss_pred ce
Q 008771 324 TK 325 (554)
Q Consensus 324 d~ 325 (554)
|+
T Consensus 803 ~~ 804 (918)
T 3thx_B 803 KN 804 (918)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 145
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=4.4e-20 Score=181.38 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=52.7
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCC-----HHHHHHHHHH---HccCCCeEEEEecCHHHH---------Hhh
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-----LDTIEWLEGY---LGKQDVPMVIISHDRAFL---------DQL 322 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD-----~~~~~~l~~~---l~~~g~tvIiisHd~~~l---------~~~ 322 (554)
.+-++......+.+-..+|++|+|||||++|| +..++.+.++ +++.|+|||+|||++..+ ..+
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34455555555555668999999999999997 5555545544 456799999999999998 678
Q ss_pred c-ceEEEeeC
Q 008771 323 C-TKIVETEM 331 (554)
Q Consensus 323 ~-d~i~~l~~ 331 (554)
| |+|++|+.
T Consensus 198 ~aD~vi~l~~ 207 (251)
T 2ehv_A 198 IARGVIVLDL 207 (251)
T ss_dssp GCSEEEEEEE
T ss_pred eeeEEEEEee
Confidence 8 99999964
No 146
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.75 E-value=1e-17 Score=175.25 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=66.6
Q ss_pred CCCCCCChhHHHHH------HHHHHHccC-CCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHHHhhcce
Q 008771 255 RLVASFSSGWQMRM------SLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 255 ~~~~~LSGGqrqRv------~LAraL~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiisHd~~~l~~~~d~ 325 (554)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.+. +.+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 9999999999999999999999988653 469999999987 5689999
Q ss_pred EEEee
Q 008771 326 IVETE 330 (554)
Q Consensus 326 i~~l~ 330 (554)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 147
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=5.3e-21 Score=194.41 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=83.1
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC-CCCCceeEEEcCCC-------ceEEEEeccccc
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ-EEPDSGNVIKAKSN-------MKIAFLSQEFEV 172 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~-~~p~~G~I~~~~~~-------~~i~~v~Q~~~~ 172 (554)
.||+++|+++.++++++|+| +|||+||+|||||+++|+|. ..|++| |.+.|.+ ..+++++|+...
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 58899999999999999999 99999999999999999998 889998 6544321 236888888766
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
...+|+.|+...+... . . .. ....+...+. ..
T Consensus 75 ~~~ltv~Dt~g~~~~~--~---~--------~e-------------------------~~~~l~~~l~----------~~ 106 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAI--N---C--------RD-------------------------CFKTIISYID----------EQ 106 (301)
T ss_dssp CEEEEEEEEC-------------------------------------------------CTTHHHHHH----------HH
T ss_pred ccCcchhhhhhhhhhc--C---c--------HH-------------------------HHHHHHHHHH----------HH
Confidence 6666776654321000 0 0 00 0000000010 01
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCC-CCHHHHHHHHHHHccCCCeEEEEecCHH
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-LDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~-LD~~~~~~l~~~l~~~g~tvIiisHd~~ 317 (554)
.++++.++|||||||+.+|||++ +|++||||++ ||+...+.+..+-.+.+.++|+.+||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 13445689999999999999986 9999999986 9998865444433335788999999974
No 148
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=1.4e-20 Score=180.75 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=103.8
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc--cCccHHHHHHHhhHHHHHHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLE 197 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~ 197 (554)
.++|+++||+|+||||||||+++|+|++.| .++|++|++.++ ...++.++....+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~---------- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYD---------- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT----------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCC----------
Confidence 578999999999999999999999998865 479999998665 34577665422110
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH----HHHHHHHHH
Q 008771 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW----QMRMSLGKI 273 (554)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq----rqRv~LAra 273 (554)
.+......++.++++.+++.. ..++++.++|+|+ +||+++|++
T Consensus 61 --------------------------------~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 61 --------------------------------HPDAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp --------------------------------SGGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSE
T ss_pred --------------------------------ChhhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcE
Confidence 000011223444555555543 3456788999996 478899999
Q ss_pred HccCCCeEeecCCCCC-------CCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 274 LLQDPDLLLLDEPTNH-------LDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~-------LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
++.+|.++++||||++ ||+.....+.+.++ +.|.|+++++|+..
T Consensus 108 li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 108 VILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999 89877766666553 35889999999853
No 149
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.70 E-value=4.2e-18 Score=193.24 Aligned_cols=159 Identities=13% Similarity=0.047 Sum_probs=101.1
Q ss_pred ccEEEEeEEEEe-----CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCCceEEEEecc
Q 008771 96 SGVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQE 169 (554)
Q Consensus 96 ~~i~~~~ls~~y-----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~~~i~~v~Q~ 169 (554)
+.|.+++...-. ++..+++|++|+ ++|++++|+||||||||||+|+|+|+.. ...|.. +......+++++|
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~- 652 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR- 652 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE-
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH-
Confidence 447777654222 345799999999 9999999999999999999999999743 223321 1111124555554
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
++...++.+++.
T Consensus 653 --i~~~~~~~d~l~------------------------------------------------------------------ 664 (800)
T 1wb9_A 653 --IFTRVGAADDLA------------------------------------------------------------------ 664 (800)
T ss_dssp --EEEEEC------------------------------------------------------------------------
T ss_pred --HHhhCCHHHHHH------------------------------------------------------------------
Confidence 223334433321
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHH----HHHHHHHcc-CCCeEEEEecCHHHHHhhcc
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI----EWLEGYLGK-QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~----~~l~~~l~~-~g~tvIiisHd~~~l~~~~d 324 (554)
...+++|+++++ ++.+..++.+|+++|||||++|+|+... ..+.+.+.+ .|.++|++|||.++. .+||
T Consensus 665 -----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d 737 (800)
T 1wb9_A 665 -----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPE 737 (800)
T ss_dssp ----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred -----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhh
Confidence 112456777764 4445556899999999999888776432 234445555 589999999999876 4888
Q ss_pred eEEEeeCC
Q 008771 325 KIVETEMG 332 (554)
Q Consensus 325 ~i~~l~~g 332 (554)
++..+.++
T Consensus 738 ~~~~v~n~ 745 (800)
T 1wb9_A 738 KMEGVANV 745 (800)
T ss_dssp HSTTEEEE
T ss_pred hhhceEEE
Confidence 76444443
No 150
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=1.1e-17 Score=162.05 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=103.8
Q ss_pred eeeEEceeE-EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHH
Q 008771 110 VTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (554)
Q Consensus 110 ~~~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (554)
.+.|+++.. .|++|++++|+|+||||||||++.|++...+..|.|.+. ..+. +.. .+...+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~---------~~~~------~~~-~~~~~~-- 70 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV---------TTEE------SRD-SIIRQA-- 70 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE---------ESSS------CHH-HHHHHH--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE---------Eccc------CHH-HHHHHH--
Confidence 456888887 899999999999999999999999999887776666542 2221 111 110000
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH----HHHHhhhcCCCccccCCCCCCCChhH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK----VSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
. .+. ......... ++.....++ . . ......|.++
T Consensus 71 --------~----~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~ 108 (235)
T 2w0m_A 71 --------K----QFN-------------------------WDFEEYIEKKLIIIDALMKEKE-D-Q---WSLVNLTPEE 108 (235)
T ss_dssp --------H----HTT-------------------------CCCGGGBTTTEEEEECCC-----C-T---TBCSSCCHHH
T ss_pred --------H----Hhc-------------------------chHHHHhhCCEEEEeccccccC-c-e---eeecCCCHHH
Confidence 0 000 000000000 000000001 0 0 1113459999
Q ss_pred HHHHHHHHHHccCCC--eEeecCCCCCC--CHHHHHHHHHHH----ccCCCeEEEEecCH--------HHHHhhcceEEE
Q 008771 265 QMRMSLGKILLQDPD--LLLLDEPTNHL--DLDTIEWLEGYL----GKQDVPMVIISHDR--------AFLDQLCTKIVE 328 (554)
Q Consensus 265 rqRv~LAraL~~~p~--lLlLDEPt~~L--D~~~~~~l~~~l----~~~g~tvIiisHd~--------~~l~~~~d~i~~ 328 (554)
.++...+.+...+|+ +||+||||+.+ |+.....+.+.| ++.|.|||++||+. ..+..+||+|++
T Consensus 109 ~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~ 188 (235)
T 2w0m_A 109 LVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIR 188 (235)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEE
T ss_pred HHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEE
Confidence 999888888888999 99999999888 986655555544 45799999999999 458889999999
Q ss_pred eeCC
Q 008771 329 TEMG 332 (554)
Q Consensus 329 l~~g 332 (554)
|+..
T Consensus 189 l~~~ 192 (235)
T 2w0m_A 189 FRRM 192 (235)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9764
No 151
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.69 E-value=3.8e-18 Score=173.28 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=99.2
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------------eEEEEecccccccCccHHHHHHHh
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFEVSMSRTVREEFMSA 185 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------------~i~~v~Q~~~~~~~~tv~e~~~~~ 185 (554)
+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+. .|+|++|++...+..++.+++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999877531 488999998877777787776421
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHH
Q 008771 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 265 (554)
.. ... + ..+++..|+.+ .....++..++
T Consensus 181 ~~----------------------------------------~~~--d------~~llDt~G~~~----~~~~~~~eLs~ 208 (304)
T 1rj9_A 181 KA----------------------------------------RGY--D------LLFVDTAGRLH----TKHNLMEELKK 208 (304)
T ss_dssp HH----------------------------------------HTC--S------EEEECCCCCCT----TCHHHHHHHHH
T ss_pred Hh----------------------------------------CCC--C------EEEecCCCCCC----chHHHHHHHHH
Confidence 00 000 0 01234445431 11223455558
Q ss_pred HHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH
Q 008771 266 MRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316 (554)
Q Consensus 266 qRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~ 316 (554)
||++||||++.+|+ +|.|| |+++.+. .+.+..+.+..+.|+|++||+.
T Consensus 209 ~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcCCcEEEEECCc
Confidence 99999999999999 77777 6666543 3334444445589999999984
No 152
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.67 E-value=4.6e-19 Score=196.60 Aligned_cols=152 Identities=20% Similarity=0.321 Sum_probs=90.6
Q ss_pred ccEEEEeEEEEeCC--eeeEEce----------eEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEEcCCC--
Q 008771 96 SGVKLENISKSYKG--VTVLKDV----------TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN-- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~i----------sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~~~~-- 160 (554)
+.+.++|+++.|+. +++|+.+ +|+++. +||||+||||||||+++|+|+..| ++|.|.++|.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 34789999999975 3455544 366654 999999999999999999999988 89999877643
Q ss_pred -----------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHh
Q 008771 161 -----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (554)
Q Consensus 161 -----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (554)
..|+|++|++.+++..||.+++..+... +.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~--------------~~------------------------- 126 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA--------------IA------------------------- 126 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH--------------HH-------------------------
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH--------------hc-------------------------
Confidence 2589999999888888888877432100 00
Q ss_pred CCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCC------CCCCCHHHHHHHHHHHc
Q 008771 230 VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP------TNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEP------t~~LD~~~~~~l~~~l~ 303 (554)
....++. ++++.++.+....|+++|+||| |++||+.....+.++++
T Consensus 127 -------------~~~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~ 178 (608)
T 3szr_A 127 -------------GEGMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 178 (608)
T ss_dssp -------------CSSSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred -------------CCccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence 0001111 1122333344568999999999 99999988777766654
Q ss_pred c-----CCCeEEEEecCHH
Q 008771 304 K-----QDVPMVIISHDRA 317 (554)
Q Consensus 304 ~-----~g~tvIiisHd~~ 317 (554)
+ .+.++++++||++
T Consensus 179 ~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 179 KYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHTTSSSCCEEEEEESSSC
T ss_pred HHHhcCCCCceEEEeccch
Confidence 3 3788999999976
No 153
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.67 E-value=3.7e-16 Score=145.41 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=78.9
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHcc----CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcce
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~ 325 (554)
...+.+..||||||||++||++|+. +|+++||||||++||+.+...+.+++++ .+.++|+|||+...+ ..||+
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCE
Confidence 3456678999999999999999974 4699999999999999999999998864 367999999998766 68999
Q ss_pred EEEe--eCCeeeeccCChhHHHH
Q 008771 326 IVET--EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 326 i~~l--~~g~~~~~~G~~~~~~~ 346 (554)
|+.+ ++|...++..++.++..
T Consensus 136 i~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 136 IIGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEEecCCEEEEEEEEcHHHHH
Confidence 9855 68888777777776554
No 154
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=1.3e-18 Score=166.23 Aligned_cols=180 Identities=11% Similarity=0.097 Sum_probs=95.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC-----CCCceeEEEcCCC---ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN---MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~~~~---~~i~~v~Q 168 (554)
+|+++|++|.|+ .+++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+.- ..+-++ .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~-D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV-D 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-E
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-E
Confidence 489999999997 467887 889999999999999999999999999998 7888876532100 001111 1
Q ss_pred cccccc-Cc--cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 169 EFEVSM-SR--TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 169 ~~~~~~-~~--tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
.+.... .. ...+.+.. .+......... .+..-++... .......+..+..++..
T Consensus 79 t~G~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~v~d~------------~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQR----------ALGEYLEKRQS-LQGLVVLMDI------------RHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp CCCCC------CCHHHHHH----------HHHHHHHHCTT-EEEEEEEEET------------TSCCCHHHHHHHHHHHH
T ss_pred CcCCcccccCHHHHHHHHH----------HHHHHHHhhhc-ccEEEEEEEC------------CCCCchhHHHHHHHHHH
Confidence 111100 00 00000000 00000000000 0000000000 00001122344555666
Q ss_pred cCCCccccCCCCCCCChhHHHH-HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 246 LGFTADDGDRLVASFSSGWQMR-MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqR-v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
.+++......++..+|+||+|| +.++++++.+|.++++|||||++|..++..+.+.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 7776444456678899999999 899999999999999999999999988888877664
No 155
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.66 E-value=3.3e-18 Score=180.65 Aligned_cols=161 Identities=15% Similarity=0.126 Sum_probs=97.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce--eEEEcCC-C---ceEEEEec
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKAKS-N---MKIAFLSQ 168 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G--~I~~~~~-~---~~i~~v~Q 168 (554)
.++|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...|+.| .+.+... . ..++|++|
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 35689999999999889999999998 99999999999999999999875544 2211111 1 24788899
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
+..++..+||.|++...... .. . ..+ ..+.+.+.
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~~---------------~~----~--------------------~~~---~~i~~~i~---- 116 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDAV---------------DN----S--------------------NCW---QPVIDYID---- 116 (418)
T ss_dssp ----CEEEEEEECC--------------------------------------------------C---HHHHHHHH----
T ss_pred cCCcccceeeeechhhhhhc---------------cc----h--------------------hhH---HHHHHHHH----
Confidence 87776677887765321100 00 0 000 00000010
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCC---eEeecCCC-CCCCHHHHHHHHHHHccCCCeEEEEecCHHH
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPT-NHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~---lLlLDEPt-~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~ 318 (554)
..++.+++||++|||+++.+|+ +|++|||| ++||+....++. .|.. +.++|+|.|..+.
T Consensus 117 ---------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk-~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 117 ---------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK-RLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp ---------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHH-HHTT-TSEEEEEEESTTS
T ss_pred ---------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHH-HHhc-cCcEEEEEEcccC
Confidence 1234566678999999999999 99999999 699998876664 4444 7889999887554
No 156
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.65 E-value=1.9e-17 Score=171.60 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=98.5
Q ss_pred EeEEEEeC--CeeeEEceeE-------EEECCCEEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEcCCCce------EE
Q 008771 101 ENISKSYK--GVTVLKDVTW-------EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMK------IA 164 (554)
Q Consensus 101 ~~ls~~y~--~~~~l~~isl-------~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~~~~~~------i~ 164 (554)
..++++|- ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.+.. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 45566652 2345667666 67889999999999999999999999999987 566643322110 01
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
+++|..
T Consensus 172 ~v~q~~-------------------------------------------------------------------------- 177 (356)
T 3jvv_A 172 LVNQRE-------------------------------------------------------------------------- 177 (356)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 111110
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcc
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d 324 (554)
++ ...++-.+ +||+||..+|++||+|||| |.++.+.+.+.. ..|.+||+++|+.+.+ ..||
T Consensus 178 -~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~d 238 (356)
T 3jvv_A 178 -VH---------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTID 238 (356)
T ss_dssp -BT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHH
T ss_pred -ec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHH
Confidence 00 01122222 9999999999999999999 788877766654 3589999999999988 6799
Q ss_pred eEEEeeCC
Q 008771 325 KIVETEMG 332 (554)
Q Consensus 325 ~i~~l~~g 332 (554)
|++.|..|
T Consensus 239 Rli~l~~~ 246 (356)
T 3jvv_A 239 RVVDVFPA 246 (356)
T ss_dssp HHHHTSCH
T ss_pred HHhhhcCc
Confidence 99887543
No 157
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.64 E-value=2.8e-16 Score=157.65 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=90.9
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC----CceEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
|++|++++|+|+||||||||++.|++... .|.+.+ |. ...+.|+..+.. . +.+.. .
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~------~-~~~~~----------r 86 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP------P-TAIHH----------R 86 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC------H-HHHHH----------H
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC------H-HHHHH----------H
Confidence 78999999999999999999999998654 454432 21 124667654421 1 11100 0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
+.. +. ... .......+++.+++.. ..++++..||+||.+++ ++++
T Consensus 87 ~~~----~g-------------------------~~~--~~~~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~ 131 (279)
T 1nlf_A 87 LHA----LG-------------------------AHL--SAEERQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAA 131 (279)
T ss_dssp HHH----HH-------------------------TTS--CHHHHHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHH
T ss_pred HHH----HH-------------------------hhc--ChhhhhhccCceEEee-cCCCCcccCCHHHHHHH---HHhc
Confidence 000 00 000 0112334455566543 34677899999997765 6788
Q ss_pred cCCCeEeecCCCC--CCCHHH---HHHHHHH----HccCCCeEEEEecCHHHHH
Q 008771 276 QDPDLLLLDEPTN--HLDLDT---IEWLEGY----LGKQDVPMVIISHDRAFLD 320 (554)
Q Consensus 276 ~~p~lLlLDEPt~--~LD~~~---~~~l~~~----l~~~g~tvIiisHd~~~l~ 320 (554)
.+|++||+||||+ ++|... ...+.+. .++.|.|||+|+|+.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8999999999999 999732 2333333 3456999999999987664
No 158
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.62 E-value=4.3e-17 Score=168.94 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=90.4
Q ss_pred eeEEce-eEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCc----ee-EEEcCCCc----eEEEEecccccccCccH
Q 008771 111 TVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDS----GN-VIKAKSNM----KIAFLSQEFEVSMSRTV 178 (554)
Q Consensus 111 ~~l~~i-sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~----G~-I~~~~~~~----~i~~v~Q~~~~~~~~tv 178 (554)
+.|+.+ ++.|++|++++|+|+||||||||++.|++.. +|++ |. |++++... ++++++|.+.+++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~---- 193 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP---- 193 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCH----
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCH----
Confidence 456665 6899999999999999999999999999998 6776 46 55554321 1111111111100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
..+++.+-+. + .
T Consensus 194 -------------------------------------------------------------~~v~~ni~~~-----~--~ 205 (349)
T 1pzn_A 194 -------------------------------------------------------------DEVLKHIYVA-----R--A 205 (349)
T ss_dssp -------------------------------------------------------------HHHGGGEEEE-----E--C
T ss_pred -------------------------------------------------------------HHHhhCEEEE-----e--c
Confidence 0111111110 0 0
Q ss_pred CCChhHHHHHHHHHHHc-------cCCCeEeecCCCCCCCHHH------------HHHHHHH----HccCCCeEEEEecC
Q 008771 259 SFSSGWQMRMSLGKILL-------QDPDLLLLDEPTNHLDLDT------------IEWLEGY----LGKQDVPMVIISHD 315 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~-------~~p~lLlLDEPt~~LD~~~------------~~~l~~~----l~~~g~tvIiisHd 315 (554)
.-|.+++|++.++++++ .+|++||+||||++||+.. ...+... .++++.|||+++|+
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 12577888888888888 6899999999999999852 2333333 34579999999999
Q ss_pred HHHHHhhcceEEEeeCCee
Q 008771 316 RAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~ 334 (554)
.......++.+.....|.+
T Consensus 286 ~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 286 QARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp C---------------CCC
T ss_pred ccccccccCCccccCCcce
Confidence 8766544444445555543
No 159
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=2.6e-15 Score=144.26 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCChhH--HHHHHHHHHHccC-CCeEeecCCCCCCCHHH--------HHH----HHHHHccCCCeEEEEecCHH------
Q 008771 259 SFSSGW--QMRMSLGKILLQD-PDLLLLDEPTNHLDLDT--------IEW----LEGYLGKQDVPMVIISHDRA------ 317 (554)
Q Consensus 259 ~LSGGq--rqRv~LAraL~~~-p~lLlLDEPt~~LD~~~--------~~~----l~~~l~~~g~tvIiisHd~~------ 317 (554)
.+|+++ +++++.+++++.+ |+++|+||||+.+|... ... |.++.++.+.|+|+++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 445554 5688888999986 99999999999999632 122 33334556899999999875
Q ss_pred -------HHHhhcceEEEeeCC
Q 008771 318 -------FLDQLCTKIVETEMG 332 (554)
Q Consensus 318 -------~l~~~~d~i~~l~~g 332 (554)
.+..+||+|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 677899999999754
No 160
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.56 E-value=3.3e-16 Score=151.62 Aligned_cols=128 Identities=12% Similarity=0.149 Sum_probs=84.6
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCCC--CceeEEEcCCC------ceEEEEecccccccCccHHHHHHHhhHH
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~~~~------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (554)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.. ..++|+||++..+..+++...|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f------ 83 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAF------ 83 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCE------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHH------
Confidence 346789999999999999999999999999986 68988876543 2477888875433222210000
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (554)
++.+.+. ..+.|-.++.
T Consensus 84 ------------------------------------------------------~E~~~~~--------~~~yg~~~~~- 100 (219)
T 1s96_A 84 ------------------------------------------------------LEHAEVF--------GNYYGTSREA- 100 (219)
T ss_dssp ------------------------------------------------------EEEEEET--------TEEEEEEHHH-
T ss_pred ------------------------------------------------------HHHHHHH--------hccCCCCHHH-
Confidence 0000000 0011111221
Q ss_pred HHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHh
Q 008771 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 269 ~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~ 321 (554)
+..++..++++||| ||+.+...+.+.+. .+.||+++||+++.+.+
T Consensus 101 --v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 --IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR 145 (219)
T ss_dssp --HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH
T ss_pred --HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH
Confidence 33445568999999 99999999999887 58999999999999875
No 161
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.55 E-value=5.9e-16 Score=161.71 Aligned_cols=123 Identities=22% Similarity=0.278 Sum_probs=91.6
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEcCCCc------eEEEEecccccccCccHHHHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFMS 184 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~~~~~------~i~~v~Q~~~~~~~~tv~e~~~~ 184 (554)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+. .++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 566665 7899999999999999999999999999998 89996644321 11222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH
Q 008771 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
.+|+. +..|
T Consensus 190 ------------------------------------------------------------~~g~~-------~~~~---- 198 (372)
T 2ewv_A 190 ------------------------------------------------------------EVGED-------TKSF---- 198 (372)
T ss_dssp ------------------------------------------------------------EBTTT-------BSCS----
T ss_pred ------------------------------------------------------------ecCCC-------HHHH----
Confidence 12221 2345
Q ss_pred HHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 265 rqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
+.+|+++|..+|++||+|||+ |++....+.+.. ..|.++|.++|+.+ +..+|||++.|
T Consensus 199 --~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 --ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp --HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred --HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 469999999999999999999 887766555544 45889999999966 56678887655
No 162
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.53 E-value=4.5e-16 Score=162.03 Aligned_cols=144 Identities=12% Similarity=0.122 Sum_probs=105.2
Q ss_pred EEEeEEEE---eCC--eeeE---------EceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---
Q 008771 99 KLENISKS---YKG--VTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--- 161 (554)
Q Consensus 99 ~~~~ls~~---y~~--~~~l---------~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--- 161 (554)
++++++|+ |++ ..+| +++||.|++|++++|+|+||||||||+++|+|+++|++|.|.+++...
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 67888888 753 3455 999999999999999999999999999999999999999999986321
Q ss_pred -----eEEEEe-cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 162 -----KIAFLS-QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 162 -----~i~~v~-Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
.++|++ |+..
T Consensus 217 ~~~~~~v~~v~~q~~~---------------------------------------------------------------- 232 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK---------------------------------------------------------------- 232 (361)
T ss_dssp TTCSSEEEEECC--------------------------------------------------------------------
T ss_pred cccCCEEEEeecCccc----------------------------------------------------------------
Confidence 233333 2210
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecC
Q 008771 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd 315 (554)
..++++..++..|+.++..+|+.+++|||... ...+.+ +.+..-..|++.++|+
T Consensus 233 ----------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~~l-~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 233 ----------------------EEENAPVTAATLLRSCLRMKPTRILLAELRGG---EAYDFI-NVAASGHGGSITSCHA 286 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCST---HHHHHH-HHHHTTCCSCEEEEEC
T ss_pred ----------------------cccccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHHHH-HHHhcCCCeEEEEECC
Confidence 01134456788899999999999999999963 333333 3333334578999999
Q ss_pred HHHHHhhcceEEEeeCCe
Q 008771 316 RAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~ 333 (554)
.+ +...++|++.+..+.
T Consensus 287 ~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS-CELTFERLALMVLQN 303 (361)
T ss_dssp SS-HHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHHHhcc
Confidence 76 667899999887663
No 163
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=6e-16 Score=162.85 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=106.6
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCE--EEEECCCCccHHHHHHHHHCCCCCCceeEEEc---C-CCceEEEEecccc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---K-SNMKIAFLSQEFE 171 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~---~-~~~~i~~v~Q~~~ 171 (554)
+++++ ++.|++.+ |+++||+|++|++ ++|||+||||||||+++|+|+.- .|..... + ....++|++|++.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 66777 88998888 9999999999999 99999999999999999999852 2211110 0 0125899999988
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc-CCCc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GFTA 250 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gl~~ 250 (554)
+++.+||.+++..+...... ..... + ...+..++..+|... ++..
T Consensus 93 l~~~ltv~D~~~~g~~~~~~--~~~~~--------------i------------------~~~i~~q~~~~L~e~~~i~r 138 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKE--DSYKP--------------I------------------VEFIDAQFEAYLQEELKIRR 138 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHH--HHSHH--------------H------------------HHHHHHHHHHHHHHC--CCC
T ss_pred cccccchhhhhhhhhccccc--hhhhH--------------H------------------HHHHHHHHHHHHHHHHhhhh
Confidence 77777887776432110000 00000 0 001222333333332 3221
Q ss_pred ---cccCCCC-----------CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH----HccCCCeEEEE
Q 008771 251 ---DDGDRLV-----------ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVII 312 (554)
Q Consensus 251 ---~~~~~~~-----------~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~g~tvIii 312 (554)
...+..+ +.|+-.. +.|+++|..+++|+++|||+..|.+.....+.+. |+..|.+|+++
T Consensus 139 ~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 139 VLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQF 215 (427)
T ss_dssp CCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCC
T ss_pred hhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEec
Confidence 0011111 2455555 7999999999999999999999999877666544 55679999999
Q ss_pred ecCH
Q 008771 313 SHDR 316 (554)
Q Consensus 313 sHd~ 316 (554)
|.|-
T Consensus 216 s~~d 219 (427)
T 2qag_B 216 PTDD 219 (427)
T ss_dssp C---
T ss_pred CCCc
Confidence 9763
No 164
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.51 E-value=2.9e-18 Score=179.01 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=97.1
Q ss_pred eEEceeEEEEC--CCEEEEECCCCccHHHHHHHHHCCCCCCc----eeEEEcCCCceEEEEecccccccCccHHHHHHHh
Q 008771 112 VLKDVTWEVKK--GEKVGLVGVNGAGKTTQLRIIAGQEEPDS----GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (554)
Q Consensus 112 ~l~~isl~i~~--Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~----G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~ 185 (554)
+.+.|+++|.+ |++++|+|+||||||||+++|+|+++|++ |+|.+++... ..+.. ...... +++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----~~~~~-~~~~~~-~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----GDEQA-MQYSDY-PQMALG 229 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----SCTTS-SCTTTH-HHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----CCccc-CChhHH-HHHHHH
Confidence 35679999999 99999999999999999999999999999 7766532100 00010 011112 222211
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHH
Q 008771 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 265 (554)
...... + ...+.+-+..++. ...+..+..+|+|++
T Consensus 230 ~q~~~~----------------------------~---------------~~t~~~nl~~~~~--~~~~~~~~~~~~~~~ 264 (365)
T 1lw7_A 230 HQRYID----------------------------Y---------------AVRHSHKIAFIDT--DFITTQAFCIQYEGK 264 (365)
T ss_dssp HHHHHH----------------------------H---------------HHHHCSSEEEESS--CHHHHHHHHHHHHSC
T ss_pred HHHHHH----------------------------H---------------HHhccCCEEEEeC--CchHHHHHHHHHcCC
Confidence 100000 0 0000000001110 111122335667778
Q ss_pred HHHHHHHHHc-cCCCeEeecC---CC------CCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 266 MRMSLGKILL-QDPDLLLLDE---PT------NHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 266 qRv~LAraL~-~~p~lLlLDE---Pt------~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
++..+++++. .+|+++|||| |+ .++|+..+..+.+.| ++.+.++|+++|. ....++++++..+
T Consensus 265 ~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 265 AHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp CCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 8888888774 6999999999 65 588988777777765 3458899999986 4566677766544
No 165
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.51 E-value=1.6e-16 Score=149.62 Aligned_cols=155 Identities=15% Similarity=0.066 Sum_probs=92.0
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEecccccccCccHHHHHHHhhHHHH
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (554)
.|++|++++|+|+||||||||+++|+|. |+.|.|.+++.+. .++|++|+.. ...++.+++......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~-- 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR-- 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH--
Confidence 4789999999999999999999999998 7889999876431 2355555432 233455544211000
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc-ccCCCCCCCChhHHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD-DGDRLVASFSSGWQMRMS 269 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-~~~~~~~~LSGGqrqRv~ 269 (554)
. .. . +... .++.++..+++... ..+.++..+|+|++|+++
T Consensus 79 --------~---~~------------------------~-~~~~---~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 79 --------Y---AK------------------------E-GYFV---ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEA 119 (191)
T ss_dssp --------H---HH------------------------T-SCEE---EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHH
T ss_pred --------H---hc------------------------c-CCeE---EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHH
Confidence 0 00 0 0000 00001111122100 003345689999999999
Q ss_pred HHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCC--CeEEEEecCHHHHHhhcceEE
Q 008771 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD--VPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 270 LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g--~tvIiisHd~~~l~~~~d~i~ 327 (554)
++|++..+|+++ +|+...+.+.+.+.... ..+++.|++. .+.+++++|+
T Consensus 120 ~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~-~~~~~~~~i~ 170 (191)
T 1zp6_A 120 IERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGK-DTDQALQSAI 170 (191)
T ss_dssp HHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTC-CTTTTTTTTH
T ss_pred HHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCC-CHHHHHHHHH
Confidence 999999999987 68888888877765431 1344445432 2344556553
No 166
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.4e-17 Score=178.32 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=91.9
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-E-EEECCcee-eEEEEecccc
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-E-VLLGEHNV-LPNYFEQNQA 498 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G-~-i~~~~~~~-~~~y~~Q~~~ 498 (554)
.+.++++|+++.|+ ++||++.+||+++|+||||||||||+|+|+|+++|++| + |.+++..- .++|++|+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45678888888774 68999999999999999999999999999999999999 8 99986321 2568888752
Q ss_pred c-CCCCCCCHHHHHHhhccc----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 499 E-ALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 499 ~-~l~~~~tv~e~l~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
. .+....||.+|+ ..... .....+..++..+|+.. ..+ +..|||||||||+|
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLER-INE--NKDLYLECISQLGQ 246 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSS-GGG--CHHHHHHHHHHHHH
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCc-ccc--hhhhhHHHHHHHHH
Confidence 1 233456888877 32210 11123456788889853 233 89999999999974
No 167
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.50 E-value=1.4e-16 Score=146.30 Aligned_cols=83 Identities=22% Similarity=0.086 Sum_probs=71.3
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCce-----EEEEecccccc
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-----IAFLSQEFEVS 173 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~-----i~~v~Q~~~~~ 173 (554)
..+++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.+++.+.. -.|++|++.++
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 3356778888778999999999999999999999999999999999999 99999998876541 12689998887
Q ss_pred cCccHHHHHH
Q 008771 174 MSRTVREEFM 183 (554)
Q Consensus 174 ~~~tv~e~~~ 183 (554)
.+|+.+++.
T Consensus 88 -~ltv~e~l~ 96 (158)
T 1htw_A 88 -RLADPEELE 96 (158)
T ss_dssp -TCSCTTHHH
T ss_pred -cCCcHHHHH
Confidence 889988874
No 168
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.48 E-value=1.1e-16 Score=161.98 Aligned_cols=107 Identities=20% Similarity=0.169 Sum_probs=79.9
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCC
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~ 503 (554)
.|+++|++|.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+|.. |++|++ .+ +
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~--------~v~q~~--~l-f 165 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS--------FANHKS--HF-W 165 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC--------GGGTTS--GG-G
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE--------EecCcc--cc-c
Confidence 378899999997 67999999999999999999999999999999999998 788842 456654 23 2
Q ss_pred CCCHHH-HHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhc
Q 008771 504 DKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKII 551 (554)
Q Consensus 504 ~~tv~e-~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~R 551 (554)
..|+.+ |+.... ... ..+...+..+ ++ +.++ +..||||||||
T Consensus 166 ~~ti~~~ni~~~~-~~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR 208 (305)
T 2v9p_A 166 LASLADTRAALVD-DAT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK 208 (305)
T ss_dssp GGGGTTCSCEEEE-EEC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC
T ss_pred cccHHHHhhccCc-ccc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH
Confidence 346765 654431 222 2445556654 33 2334 78999999999
No 169
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=2.2e-13 Score=132.79 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.2
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHC--CCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEP 149 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p 149 (554)
-|++|++++|+|+||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 478999999999999999999999999 5665
No 170
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.44 E-value=7.2e-16 Score=157.13 Aligned_cols=117 Identities=12% Similarity=0.006 Sum_probs=88.3
Q ss_pred eEEEeeeeEecCCccceeceEEE-----------------------EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLT-----------------------IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~-----------------------i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~ 480 (554)
.|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 478899999995 455655554 8999999999999999999999999999997663
Q ss_pred EEECCceeeEEEEecccccCCCCCCCHHHHHHhhc----c-cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA----E-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 481 i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~----~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
..++|++|+. .+.+. |+.+++.... + ......+...|..++ .+ ..+.++..|||||+||+++
T Consensus 121 -------~~v~~v~qd~--~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 121 -------PRVDLVTTDG--FLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp -------CCEEEEEGGG--GBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETTTTEEEEE
T ss_pred -------CeEEEEecCc--cCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChhhhhhhhh
Confidence 2367999985 34455 9999975321 1 223456777788777 32 3457788999999999863
No 171
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.43 E-value=8.3e-17 Score=151.70 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=98.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHH
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (554)
|++++|+|+||||||||+++|++ |.+|.+.+++.. ..+++++|........++.+++......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVN---------- 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHH----------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHH----------
Confidence 67999999999999999999997 678988887532 1345666554332333454443211000
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCC--ChhHHHHHHHHH----
Q 008771 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF--SSGWQMRMSLGK---- 272 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L--SGGqrqRv~LAr---- 272 (554)
.... .. ..+++.+.. ... .+.+..+ |+|++|++.++.
T Consensus 69 ---~~~~-------------------------~~-------~~ild~~~~-~~~-~~~~~~~~~s~g~~~~~~~i~L~~~ 111 (189)
T 2bdt_A 69 ---FLLA-------------------------QN-------DVVLDYIAF-PDE-AEALAQTVQAKVDDVEIRFIILWTN 111 (189)
T ss_dssp ---HHHT-------------------------TC-------EEEEESCCC-HHH-HHHHHHHHHHHCSSEEEEEEEEECC
T ss_pred ---HHhc-------------------------CC-------cEEEeeccC-HHH-HHHHHHHHHhcccCCCeEEEEEeCC
Confidence 0000 00 001111110 000 0111234 888888888888
Q ss_pred --HHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecC-HHHHHhhcceEEEeeCCeeeeccCCh
Q 008771 273 --ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD-RAFLDQLCTKIVETEMGVSRTYEGNY 341 (554)
Q Consensus 273 --aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd-~~~l~~~~d~i~~l~~g~~~~~~G~~ 341 (554)
+++.+|....+|+ +||+..+.. .+.+ ...+.++|.+||. ++.+.++||+|+ ++|++ .+.|+.
T Consensus 112 ~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~-~~~~~~ 179 (189)
T 2bdt_A 112 REELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF-IFCMAG 179 (189)
T ss_dssp HHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG-SCC---
T ss_pred HHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE-EEeecC
Confidence 8889999888884 789876665 4443 3457899999999 999999999998 88876 455544
No 172
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=5.5e-14 Score=145.01 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=84.0
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEc-CC------CceEEEEecccccccCccHHHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKA-KS------NMKIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~-~~------~~~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
-++++++.+ +|++++|+|+||||||||+++|+|... |++|+|.+. |. ...+++++|+..+++..++.++.+
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 355666643 799999999999999999999999999 999999875 42 236899999988777777766311
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChh
Q 008771 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (554)
. .+...++...+.++++.+|+. .+.++.+.+|| |
T Consensus 284 ~--------------------------------------------~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G 317 (358)
T 2rcn_A 284 W--------------------------------------------HLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-G 317 (358)
T ss_dssp C--------------------------------------------CCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-T
T ss_pred c--------------------------------------------CCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-H
Confidence 0 011122344566778888886 45688899999 9
Q ss_pred HHHHHHHHHHH
Q 008771 264 WQMRMSLGKIL 274 (554)
Q Consensus 264 qrqRv~LAraL 274 (554)
|+||++||+++
T Consensus 318 ~~~r~ala~gl 328 (358)
T 2rcn_A 318 CAIREAVENGA 328 (358)
T ss_dssp CHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.42 E-value=1.7e-15 Score=149.07 Aligned_cols=143 Identities=18% Similarity=0.164 Sum_probs=86.4
Q ss_pred CCCEEEEECCCCccHHHHHHHHH---CCCCCCceeEEEcCCC------ceEEEEecccccccCccHHHHHHHhhHHHHHH
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~---G~~~p~~G~I~~~~~~------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 192 (554)
++++++|+|+||||||||+++|+ |+..|+.|+|.+++.. ..+.+++|+..+.+..++.+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~---- 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---- 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Confidence 47999999999999999999999 9999999998775421 1133344555444555565554321100
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh--hhcCC-----------CccccCCCCCC
Q 008771 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM--PELGF-----------TADDGDRLVAS 259 (554)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~lgl-----------~~~~~~~~~~~ 259 (554)
. .-....- ...... ...+..+. ..+++ -....++.+..
T Consensus 102 ------~--~~~~~il-------------------~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 ------R--RGQHWLL-------------------DGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp ------C--TTSCEEE-------------------ESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ------c--CCCeEEE-------------------ECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 0 0000000 000000 01111111 11110 01123567789
Q ss_pred CChhHHHHHHHHHHH-ccCCCeEeec----CCCCCCCHHHHHHHHHHHcc
Q 008771 260 FSSGWQMRMSLGKIL-LQDPDLLLLD----EPTNHLDLDTIEWLEGYLGK 304 (554)
Q Consensus 260 LSGGqrqRv~LAraL-~~~p~lLlLD----EPt~~LD~~~~~~l~~~l~~ 304 (554)
||| |+ +++ +.+|++++|| |||++||..+.+.+.+.++.
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 999 55 677 9999999999 99999999888777776654
No 174
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.40 E-value=4.4e-15 Score=136.23 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=69.2
Q ss_pred EeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeE-----EEEecccccCC
Q 008771 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEAL 501 (554)
Q Consensus 427 ~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~-----~y~~Q~~~~~l 501 (554)
..++++.|++..+++++||+|.+||+++|+||||||||||+|+|+|++ |++|+|.+++.++.. .|++|+. .+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~--~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHF--DL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEE--EC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecc--cc
Confidence 345677787667899999999999999999999999999999999999 999999998876532 2577874 35
Q ss_pred CCCCCHHHHHHh
Q 008771 502 DLDKTVLETVAE 513 (554)
Q Consensus 502 ~~~~tv~e~l~~ 513 (554)
+ ..||.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 5 7899998854
No 175
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.40 E-value=4.5e-14 Score=144.62 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=104.8
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------------eEEEEecccccccCccHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------------~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
.++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+. .+.|++|...+.+..+|++++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999876432 3669999888877788888874
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChh
Q 008771 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (554)
.+... .. +. -+++..|... .....+.+|
T Consensus 206 ~~~~~----------------------------------------~~--d~------vliDtaG~~~-~~~~l~~eL--- 233 (328)
T 3e70_C 206 HAKAR----------------------------------------GI--DV------VLIDTAGRSE-TNRNLMDEM--- 233 (328)
T ss_dssp HHHHH----------------------------------------TC--SE------EEEEECCSCC-TTTCHHHHH---
T ss_pred HHHhc----------------------------------------cc--hh------hHHhhccchh-HHHHHHHHH---
Confidence 32100 00 00 0133334321 112222333
Q ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH---------HHHHhhcceEEEeeCCe
Q 008771 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR---------AFLDQLCTKIVETEMGV 333 (554)
Q Consensus 264 qrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~---------~~l~~~~d~i~~l~~g~ 333 (554)
-.+++++..++.+++||.+|. . ...+.+..+-+..+.|+||+||.- +.+....-.|.++..|.
T Consensus 234 ----~~i~ral~~de~llvLDa~t~-~--~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 234 ----KKIARVTKPNLVIFVGDALAG-N--AIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp ----HHHHHHHCCSEEEEEEEGGGT-T--HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSS
T ss_pred ----HHHHHHhcCCCCEEEEecHHH-H--HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCC
Confidence 348999999999999996665 3 333444444445789999999943 23444455778887775
No 176
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.38 E-value=1e-13 Score=136.27 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=67.7
Q ss_pred CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhh
Q 008771 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514 (554)
Q Consensus 435 ~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (554)
++..+|+++||++.+|++|||+||||||||||+++|+|++ |.+.++...-.++|++|+. +....|+.+++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 3456899999999999999999999999999999999976 3333221112367899873 44677999887643
Q ss_pred cc--------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 515 AE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 515 ~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.. ......+...|..+ .....+++..||+||++|+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l---~~~~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI---VEGKTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH---HTTCCEEECCEETTTTEECSS
T ss_pred ccCCCCCCcccccHHHHHHHHHHH---HCCCCeecccccccccCccCc
Confidence 21 12233455666653 123467889999999999853
No 177
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=3.2e-16 Score=161.61 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=68.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ce
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~ 162 (554)
+|+++++++.|+...+|+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.+ .+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3677888989977789999999999999999999999999999999999999999999876532 24
Q ss_pred EEEEeccccccc
Q 008771 163 IAFLSQEFEVSM 174 (554)
Q Consensus 163 i~~v~Q~~~~~~ 174 (554)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 789999887764
No 178
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.36 E-value=2.7e-14 Score=142.57 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEEEEecccccCCCCCCCHHHHHHhhccc---CCHH
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAED---WRID 521 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~ 521 (554)
.++|+||||||||||+++|+|+..|++|+|.++|.++ .++|++|+. .+.+..||.|++..+... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~--~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG--GVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC--CCcCCceEEechhhhhhcccHHHHH
Confidence 4799999999999999999999999999999887643 357888874 466778999987654321 1112
Q ss_pred HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+..++. ....+..+..|||||+|||++
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~i 109 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPD 109 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCC
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhh
Confidence 3344433 334567889999999999875
No 179
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.36 E-value=1.3e-13 Score=147.01 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=98.5
Q ss_pred EEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------------ceEEEEecccccccCc
Q 008771 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSR 176 (554)
Q Consensus 113 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~~~~~~ 176 (554)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+ ..|+|++|+..+++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999986432 1489999988776777
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
++++++..+.. . +.+. -+++..|..... ...
T Consensus 363 tV~e~l~~a~~-----------------~-------------------------~~Dv------VLIDTaGrl~~~-~~l 393 (503)
T 2yhs_A 363 VIFDAIQAAKA-----------------R-------------------------NIDV------LIADTAGRLQNK-SHL 393 (503)
T ss_dssp HHHHHHHHHHH-----------------T-------------------------TCSE------EEECCCCSCCCH-HHH
T ss_pred HHHHHHHHHHh-----------------c-------------------------CCCE------EEEeCCCccchh-hhH
Confidence 88887643210 0 0000 023333432111 011
Q ss_pred CCCCChhHHHHHHHHHHHc-cCCC-eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEec
Q 008771 257 VASFSSGWQMRMSLGKILL-QDPD-LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~-~~p~-lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisH 314 (554)
+.+| ++++.+++++. ..|+ +||...||++.|.. ..+..+-...+.|.||+||
T Consensus 394 m~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 394 MEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred HHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence 1222 47888888764 4564 55555599886544 3333333456899999999
No 180
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.35 E-value=1e-13 Score=133.98 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=58.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEEEecccccCCCCCCC
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKT 506 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y~~Q~~~~~l~~~~t 506 (554)
.-|+++||+|.+|++++|+||||||||||+++|+|++ | |.|.+ +.++ ..+|++|++. ++...+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT--IFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH--HHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH--HHHHhh
Confidence 3589999999999999999999999999999999998 6 88888 4332 1346776642 111110
Q ss_pred HH-HHHHh----h-cccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 507 VL-ETVAE----A-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 507 v~-e~l~~----~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.. +++.. . ........+..++...... .++ ..|||||+||++|
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i 133 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKST 133 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCS
T ss_pred hccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHh
Confidence 00 00000 0 0011234566666654321 112 6789999999875
No 181
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.35 E-value=2.1e-14 Score=134.17 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=35.8
Q ss_pred ccCCCeEeecCCCC-CCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 008771 275 LQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (554)
Q Consensus 275 ~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~---~~g~tvIiisHd~~ 317 (554)
+.+|++||||||++ ++|+...+.|.+++. +.++++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 34999999999995 899999888877764 36899999999863
No 182
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.34 E-value=1.8e-15 Score=154.85 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhh
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~ 322 (554)
+||+||+||+..+++++.+|+++ ||| ....+.| ..++ .+.+|+++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l-~~l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERL-ARIN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHH-HHHC-SSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHH-HHhC-CCCeEEEecccCCCHHHH
Confidence 79999999999999999999988 999 2222223 2233 578999999975444433
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=1.2e-13 Score=145.62 Aligned_cols=147 Identities=21% Similarity=0.254 Sum_probs=90.7
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----------CCceeEEEcCCCceEEEEecccccccCccHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----------PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----------p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e 180 (554)
--++++|+++.|++++|||+||||||||+++|+|..+ |+.|.|.+++. .. -.+.+.+.+..... +
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~-~~l~DtpGli~~a~--~ 221 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ER-FTLADIPGIIEGAS--E 221 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CE-EEEEECCCCCCCGG--G
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ce-EEEEeccccccchh--h
Confidence 3589999999999999999999999999999999842 33343333220 01 11222222211000 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008771 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (554)
+. .+. ..++ . ..++++.++..+++. +.++.+|
T Consensus 222 ~~--~L~----------------------~~fl-----------~---------~~era~~lL~vvDls----~~~~~~l 253 (416)
T 1udx_A 222 GK--GLG----------------------LEFL-----------R---------HIARTRVLLYVLDAA----DEPLKTL 253 (416)
T ss_dssp SC--CSC----------------------HHHH-----------H---------HHTSSSEEEEEEETT----SCHHHHH
T ss_pred hh--hhh----------------------HHHH-----------H---------HHHHHHhhhEEeCCc----cCCHHHH
Confidence 00 000 0000 0 001123345555553 4566789
Q ss_pred ChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHH---HHHHHHHccCCCeEEEEec
Q 008771 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI---EWLEGYLGKQDVPMVIISH 314 (554)
Q Consensus 261 SGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~---~~l~~~l~~~g~tvIiisH 314 (554)
|+|++|++++|++|+..|.+|+| |.+|+... ..+.+.+++.+.++|+||.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 99999999999999999999999 99998543 3334445556777777663
No 184
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.33 E-value=2.2e-14 Score=152.68 Aligned_cols=120 Identities=15% Similarity=0.082 Sum_probs=88.0
Q ss_pred ceEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---ee----------
Q 008771 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV---------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~---~~---------- 488 (554)
..++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|. ++
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4578899999997 56799999 999999999999999999999999999999999999998886 22
Q ss_pred -----eEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|.. ..+.+..||.+++..... ++...+-.-..+-..+..||||| |||+|
T Consensus 209 ~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae---------~~~~~~~~v~~~ld~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 209 DGRARSVVIAAPAD-VSPLLRMQGAAYATRIAE---------DFRDRGQHVLLIMDSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHH---------HHHTTTCEEEEEEECHHHHHHHH-HHHHH
T ss_pred cccCceEEEEECCC-CCHHHHHHHHHHHHHHHH---------HHHhCCCCHHHHHHhHHHHHHHH-HHHHH
Confidence 247899853 234456677777654321 11111111111223477899999 88753
No 185
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.32 E-value=1.9e-14 Score=138.02 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=39.9
Q ss_pred ecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008771 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (554)
Q Consensus 433 ~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~ 482 (554)
.|+++.+++++ .+||+++|+||||||||||+++|+|+ +|++|+|.
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 35556688885 89999999999999999999999999 99999884
No 186
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.32 E-value=2.1e-14 Score=151.07 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=83.3
Q ss_pred ccceeceEEEEecCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-eEEEEec
Q 008771 437 RLLFNRANLTIERGE--------------------KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFEQ 495 (554)
Q Consensus 437 ~~~l~~vs~~i~~Ge--------------------~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-~~~y~~Q 495 (554)
..+++++||+|.+|| ++||+||||||||||+++|+|+.+|++|+|.+++.++ ..+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 357999999999999 9999999999999999999999999999999887644 2368888
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChh--hhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG--EKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGG--ek~Rl~l 554 (554)
++ ..+..|+.|++...... ..+..+|..+++.. .+..+. |||| |+||++|
T Consensus 116 ~~---~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--~~~~~~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--YDFFII-ISATRFKKNDIDI 167 (413)
T ss_dssp CS---SCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--CSEEEE-EESSCCCHHHHHH
T ss_pred cc---ccCCeeehHhhcccchH---HHHHHHHHHcCCCc--cCCeEE-eCCCCccHHHHHH
Confidence 63 34567777776443222 23677888888853 244444 9999 9999863
No 187
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.30 E-value=3.8e-15 Score=157.33 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=52.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~ 160 (554)
.++++++++.|+...+|+++ +. .+|++++|+||||||||||+++|+|+++|++|+|.+.+.+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 35677777777666688888 53 8899999999999999999999999999999999886643
No 188
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.29 E-value=6.4e-12 Score=131.94 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=29.3
Q ss_pred EEECCCEEEEECCCCccHHHHHH--HHHCCCCCCce
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLR--IIAGQEEPDSG 152 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk--~i~G~~~p~~G 152 (554)
-|++|++++|+|+||||||||++ ++.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 58899999999999999999999 45677777554
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=3.7e-12 Score=131.43 Aligned_cols=139 Identities=12% Similarity=0.151 Sum_probs=78.3
Q ss_pred EEEEECCCCccHHHHHHHHHC-CCCCCceeEEEcCCC--------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~~~~--------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
.+.|+||||+|||||+++|+| ++.|+.|.|.+++.. ..+++++|...+....+-.. . .
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~---------- 104 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG-N--N---------- 104 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------C----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC-C--c----------
Confidence 389999999999999999999 789999999876532 24667777654322111000 0 0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
....+...+..+....++.. .. .||| +.
T Consensus 105 -----------------------------------~~~~~~~~i~~~~~~~~~~~-----~~-~ls~-----------l~ 132 (354)
T 1sxj_E 105 -----------------------------------DRIVIQELLKEVAQMEQVDF-----QD-SKDG-----------LA 132 (354)
T ss_dssp -----------------------------------CHHHHHHHHHHHTTTTC----------------------------
T ss_pred -----------------------------------chHHHHHHHHHHHHhccccc-----cc-cccc-----------cC
Confidence 00001112222222223211 11 5676 78
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH-HhhcceEEEe
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIVET 329 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l-~~~~d~i~~l 329 (554)
.+|+++|+|||++ ||....+.|.+.+.+ .+.++|++||++..+ ..+.+|+..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~ 188 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLI 188 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEE
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEE
Confidence 8999999999999 999999999998865 368999999997533 2344454433
No 190
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.27 E-value=4.2e-14 Score=131.38 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.5
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN 160 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~ 160 (554)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 589999999999999999999999998 8999987643
No 191
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.25 E-value=5.6e-12 Score=133.27 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=33.8
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.+|++++|++.+| +++|+|+||||||||+++|.++..
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999 999999999999999999976654
No 192
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.24 E-value=2.7e-14 Score=154.65 Aligned_cols=184 Identities=14% Similarity=0.047 Sum_probs=105.7
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEEEEecccccccCccHHHHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
.+++++++.|++|+.++|+|+||||||||+++|+|+++|++|.|.+++.. ..++++.|........|..+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 47889999999999999999999999999999999999999999987643 13556665433112345555543
Q ss_pred HhhHH--------HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh-hcCCCcccc-
Q 008771 184 SAFKE--------EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDG- 253 (554)
Q Consensus 184 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lgl~~~~~- 253 (554)
..+.. ++........++...... .-. ..+........+..+.. .++++....
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh-~~~-----------------sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGH-ASY-----------------STLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTC-EEE-----------------EEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCC-Ccc-----------------cccccCCHHHHHHHHHhcccccHHHHHh
Confidence 32210 000000000000000000 000 00000112222222211 123322111
Q ss_pred --C---CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE--EecCHHHHHhhc
Q 008771 254 --D---RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI--ISHDRAFLDQLC 323 (554)
Q Consensus 254 --~---~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi--isHd~~~l~~~~ 323 (554)
+ .....+||||+||++++. + | |++||+.....+.+.+. ..+.|+|+ +||+++.+...|
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 1 223468999999887651 1 7 99999977655555443 34788875 899999998877
Q ss_pred c
Q 008771 324 T 324 (554)
Q Consensus 324 d 324 (554)
+
T Consensus 458 g 458 (511)
T 2oap_1 458 G 458 (511)
T ss_dssp T
T ss_pred C
Confidence 5
No 193
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.23 E-value=6.6e-13 Score=134.71 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=82.5
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE---cCCCc----------eEEEEecccccc-----cCccHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEVS-----MSRTVREE 181 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~~~~~----------~i~~v~Q~~~~~-----~~~tv~e~ 181 (554)
+..|++++|+|+||||||||+|+|+ +.+|++|+|.+ .|.+. .+||++|.|.+. +.+|+ ++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 3469999999999999999999999 99999999998 66431 379999998654 56788 77
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCC
Q 008771 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (554)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LS 261 (554)
+...+.+... +. ..........+...++.++++.+||.....++++..||
T Consensus 240 l~~~f~~~~~----------------------------~~--c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls 289 (302)
T 2yv5_A 240 VRNYFREFLR----------------------------YQ--CKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIK 289 (302)
T ss_dssp GGGGCGGGHH----------------------------HH--HHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----------------------------cc--CCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6432211000 00 00000012233445788999999997656788899999
Q ss_pred hhHHHHHHHHH
Q 008771 262 SGWQMRMSLGK 272 (554)
Q Consensus 262 GGqrqRv~LAr 272 (554)
|.+++++.|||
T Consensus 290 ~~~~R~~~~~~ 300 (302)
T 2yv5_A 290 VYLEEIKELCR 300 (302)
T ss_dssp CCCTTHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 98899999986
No 194
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.22 E-value=1.1e-13 Score=144.59 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=108.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHC------------CCCCCceeEEEcCCC-----------c---eEEEEeccccc
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG------------QEEPDSGNVIKAKSN-----------M---KIAFLSQEFEV 172 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G------------~~~p~~G~I~~~~~~-----------~---~i~~v~Q~~~~ 172 (554)
.+..|.++||||+||+|||||+++|+| .+.|+.|.|.+.+.. . ...++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346899999999999999999999999 567999999987521 1 13466777776
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
....+..+++...+.. .+. .++.++.-+...
T Consensus 96 ~~~~s~~e~L~~~fl~-------------~ir---------------------------------~~d~il~Vvd~~--- 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLS-------------HVR---------------------------------AVDAIYQVVRAF--- 126 (392)
T ss_dssp CCCCCSSSSSCHHHHH-------------HHT---------------------------------TCSEEEEEEECC---
T ss_pred ccCCcHHHHHHHHHHH-------------HHH---------------------------------HHHHHHHHHhcc---
Confidence 6555543322110000 000 011122222221
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceE
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i 326 (554)
.+..+..+||+. +| +++++|||+..+|+...+...+.+. ..|.|++ +|+...+..+|++|
T Consensus 127 ~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 127 DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHH
Confidence 134455577763 99 9999999999999998877666553 3366653 99999999999999
Q ss_pred E-EeeCC-eeeeccCChhH
Q 008771 327 V-ETEMG-VSRTYEGNYSQ 343 (554)
Q Consensus 327 ~-~l~~g-~~~~~~G~~~~ 343 (554)
. +|++| +. .+.|.+++
T Consensus 193 ~~~L~~G~~~-~~~~~~~~ 210 (392)
T 1ni3_A 193 YQYLTETKQP-IRKGDWSN 210 (392)
T ss_dssp HHHHHTTCSC-GGGSCCCH
T ss_pred HHHhccCCce-eecCCCCH
Confidence 9 89999 65 44566553
No 195
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.21 E-value=4.2e-14 Score=144.02 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=67.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEE-------------------ECCCEEEEECCCCccHHHHHHHHHCCCC--CCceeE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEV-------------------KKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNV 154 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i-------------------~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I 154 (554)
..|+++||++.|+ +++++++|.+ .+|+++||+|+||||||||+++|+|++. |++|+|
T Consensus 36 ~~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TTCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred cccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 3488999999993 7899999988 8999999999999999999999999988 999999
Q ss_pred EE---cCCCc------eEEEEecccccccCccHHHHH
Q 008771 155 IK---AKSNM------KIAFLSQEFEVSMSRTVREEF 182 (554)
Q Consensus 155 ~~---~~~~~------~i~~v~Q~~~~~~~~tv~e~~ 182 (554)
.+ ++... .++++ |...++...++.+++
T Consensus 114 ~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 114 ELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp EEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred EEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 88 65432 24555 555555555666554
No 196
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.21 E-value=2.5e-12 Score=132.75 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=57.7
Q ss_pred ceEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
.+++++++++.|+ +..+++++ |+|.+|++++|+|+||||||||+++|+|+.+|+.|.|.+.|.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 4688899999997 56789999 999999999999999999999999999999999998887664
No 197
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.18 E-value=1.9e-13 Score=144.35 Aligned_cols=125 Identities=17% Similarity=0.082 Sum_probs=86.9
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeE-------------
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------- 490 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~------------- 490 (554)
+++++++.+.|+...+|+++ +. .+|++++|+|||||||||||++|+|++.|.+|.|.+.+.++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 45677777777655678887 53 8999999999999999999999999999999998887654421
Q ss_pred -EEE---------ecccccCCCCC----CCHHHHHHhhcc---------cCCHHHHHHHHhhCCCChhhhccccCcCChh
Q 008771 491 -NYF---------EQNQAEALDLD----KTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (554)
Q Consensus 491 -~y~---------~Q~~~~~l~~~----~tv~e~l~~~~~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGG 547 (554)
+|. .|+|...+..+ .|+.+++..+.. ......+...|..+++... ..+..||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHHH
Confidence 121 25543211122 478888765421 1112334456788888642 378899999
Q ss_pred hhhccc
Q 008771 548 EKIILL 553 (554)
Q Consensus 548 ek~Rl~ 553 (554)
|+||++
T Consensus 298 ~~QRLa 303 (418)
T 1p9r_A 298 LAQRLV 303 (418)
T ss_dssp EEEEEE
T ss_pred HHHHhh
Confidence 999964
No 198
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.18 E-value=2.3e-13 Score=130.33 Aligned_cols=148 Identities=15% Similarity=0.075 Sum_probs=81.8
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (554)
.++|++++|+|+||||||||+++|+|+++|+ | ..+++|+++...+ ..+..+++.. +..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------~~~g~v~~d~~~~-~~~~~~~~~~-~~~----------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------LPAEVVPMDGFHL-DNRLLEPRGL-LPR----------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------CCEEEEESGGGBC-CHHHHGGGTC-GGG-----------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------CceEEEecCCCcC-CHHHHHHhcc-ccc-----------
Confidence 4689999999999999999999999999875 3 1356666664332 1122111100 000
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHH-HHHccCC
Q 008771 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG-KILLQDP 278 (554)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA-raL~~~p 278 (554)
..+.. ..+. ..+...+..+...-.+.....++. ..+|+||+|++++| ++++.++
T Consensus 77 -~~~~~-~~~~----------------------~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg 131 (208)
T 3c8u_A 77 -KGAPE-TFDF----------------------EGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEG 131 (208)
T ss_dssp -TTSGG-GBCH----------------------HHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEE
T ss_pred -CCCCc-hhhH----------------------HHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECC
Confidence 00000 0000 000011111111101111122333 35799999999998 8899999
Q ss_pred CeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHH-HHhhcce
Q 008771 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF-LDQLCTK 325 (554)
Q Consensus 279 ~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~-l~~~~d~ 325 (554)
.++++|||.. ..+...--.+|+++++.+. +.+++.|
T Consensus 132 ~~~l~de~~~-----------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 132 NYLLFDAPGW-----------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp SSTTBCSTTG-----------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ceeccCCchh-----------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 9999999841 1122222367888888776 4444544
No 199
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.18 E-value=3.4e-13 Score=136.70 Aligned_cols=105 Identities=17% Similarity=0.090 Sum_probs=78.3
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eEEEEecccccCCCCC
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLD 504 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------------~~~y~~Q~~~~~l~~~ 504 (554)
..+||++.+|++++|+||||||||||++.|+|+++|.+|+|.+.+.++ .++|++|++. .+++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 457888999999999999999999999999999999999999987543 2578998752 26677
Q ss_pred CCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhccc
Q 008771 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 505 ~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~ 553 (554)
.|+.+++..+..... + ..++..+|+.. ..++.+..|| |||++
T Consensus 170 ~~v~e~l~~~~~~~~-d--~~lldt~gl~~-~~~~~~~eLS---kqr~~ 211 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGY-D--VVLCDTSGRLH-TNYSLMEELI---ACKKA 211 (302)
T ss_dssp HHHHHHHHHHHHTTC-S--EEEECCCCCSS-CCHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHcCC-c--chHHhcCCCCc-chhHHHHHHH---HHHHH
Confidence 899999876421110 0 12466677643 4567888899 66654
No 200
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.17 E-value=6.9e-13 Score=133.66 Aligned_cols=134 Identities=13% Similarity=0.004 Sum_probs=77.8
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (554)
.++.++||+|++|||||||++.|++++.+. |. . ...+.+|+|+..++ ..++++|+.......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~-~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~----------- 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----G-EKSIGYASIDDFYL-THEDQLKLNEQFKNN----------- 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----G-GSCEEEEEGGGGBC-CHHHHHHHHHHTTTC-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----C-CceEEEeccccccC-ChHHHHHHhcccccc-----------
Confidence 357899999999999999999999998763 20 0 11245559997664 446666553210000
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-------ccccCCCCCCCChhHHHHHHHHHH
Q 008771 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-------ADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-------~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
..+.....+ ...+ ...+.+.+..+.-. ......+-..+||||+||+++|++
T Consensus 91 ~l~~~~g~p------------------~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~ 148 (290)
T 1odf_A 91 KLLQGRGLP------------------GTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQK 148 (290)
T ss_dssp GGGSSSCST------------------TSBC----HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEE
T ss_pred chhhhccCc------------------chhH----HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccc
Confidence 000000000 0000 11122223322111 111233446899999999999843
Q ss_pred HccCCCeEeecCCCCCCCHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDT 294 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~ 294 (554)
...+|+|||+||||+++|+..
T Consensus 149 ~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 149 IKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp EESSCSEEEEEESSTTCCCCC
T ss_pred eEcCCCEEEEeCccccCCccc
Confidence 333999999999999999853
No 201
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.17 E-value=1.4e-11 Score=111.64 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.7
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (554)
+|+++ +|+.++|+|+||||||||+++|++.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 56665 8999999999999999999999998876 35
No 202
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.12 E-value=4.5e-11 Score=120.75 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=88.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++.+.+..|+|.+.+.+ +. ....
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d---------~~--~~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD---------TQ--RPAA 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC---------SS--CHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC---------cc--cHhH
Confidence 45677888886543 788888 999999999999999999999999998888887765322 11 0000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
+ +.+. .+.+..|++......
T Consensus 142 ~-~ql~---------------------------------------------------------~~~~~~~l~~~~~~~-- 161 (295)
T 1ls1_A 142 R-EQLR---------------------------------------------------------LLGEKVGVPVLEVMD-- 161 (295)
T ss_dssp H-HHHH---------------------------------------------------------HHHHHHTCCEEECCT--
T ss_pred H-HHHH---------------------------------------------------------HhcccCCeEEEEcCC--
Confidence 0 0000 001122332111000
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCC-CCCCCHHHHHHHHHHHc
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEP-TNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEP-t~~LD~~~~~~l~~~l~ 303 (554)
..+-.+.+|.+|+.+...++|++|+||| +.++|......+.....
T Consensus 162 -~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 162 -GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp -TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 1233455788999998899999999999 99999988877766543
No 203
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.11 E-value=1.2e-13 Score=142.27 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=106.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECC-------CEEEEECCCCccHHHHHHHHHCCC----CCCceeEEEcCC-------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKG-------EKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKS------- 159 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~G-------e~~~lvG~NGsGKSTLlk~i~G~~----~p~~G~I~~~~~------- 159 (554)
++.++++..|+...+++++++.|.+| +.++|+||||+|||||+++|+|.+ .+++|.+...+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 45567777788888999999999887 899999999999999999999988 677777654321
Q ss_pred ---CceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 160 ---NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 160 ---~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
...|.|++|...+.. ++.+++.... +....+ .+ +......
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~~-----------------~~~~~~--i~----------------~~~~~~~ 141 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSAI-----------------EDFQID--IM----------------IGKGPSA 141 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHHH-----------------HTSCCC--C------------------------
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHHH-----------------Hhcccc--ee----------------eccCccc
Confidence 235889998766543 5655543210 000000 00 0000112
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIii 312 (554)
..+...+..+++.. ....+..||+|++||+.++ .+||+.+.+.+.++|+ ..+ +
T Consensus 142 ~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~ 198 (334)
T 1in4_A 142 KSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----V 198 (334)
T ss_dssp -------CCCEEEE--EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCCeEEEE--ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----C
Confidence 23444555666532 4566789999999998655 6667665555555553 233 4
Q ss_pred ecCHHHHHhhcce
Q 008771 313 SHDRAFLDQLCTK 325 (554)
Q Consensus 313 sHd~~~l~~~~d~ 325 (554)
+|+.+.+..+|++
T Consensus 199 ~~~~~~~~~ia~~ 211 (334)
T 1in4_A 199 EIEDAAAEMIAKR 211 (334)
T ss_dssp CBCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 7898888887765
No 204
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.11 E-value=4.6e-12 Score=117.48 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=57.1
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHH
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~ 521 (554)
++||+|.+||+++|+||||||||||++++.+-.. .+. .+...++++|++.... ...++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~-~d~~~g~~~~~~~~~~-~~~~~~~~~~~-------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VIS-SDFCRGLMSDDENDQT-VTGAAFDVLHY-------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEE-HHHHHHHHCSSTTCGG-GHHHHHHHHHH--------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEc-cHHHHHHhcCcccchh-hHHHHHHHHHH--------
Confidence 5899999999999999999999999999764221 122 1222356777653222 22223333221
Q ss_pred HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
... .....+... .......+||||||||+|
T Consensus 65 ~~~-~~~~~g~~~--~~~~~~~~s~g~~qrv~i 94 (171)
T 4gp7_A 65 IVS-KRLQLGKLT--VVDATNVQESARKPLIEM 94 (171)
T ss_dssp HHH-HHHHTTCCE--EEESCCCSHHHHHHHHHH
T ss_pred HHH-HHHhCCCeE--EEECCCCCHHHHHHHHHH
Confidence 111 222344432 334556679999999864
No 205
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.09 E-value=1.5e-12 Score=134.67 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=77.7
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eEEEEecccccC-CCCC
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEA-LDLD 504 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------------~~~y~~Q~~~~~-l~~~ 504 (554)
.+||++.+|++++|+||||||||||++.|+|+++|.+|+|.+.+.++ .++|++|++ . +++.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~--~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG--DKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSS--SSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecc--cccChh
Confidence 47788999999999999999999999999999999999999987553 257889874 3 6677
Q ss_pred CCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhccc
Q 008771 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 505 ~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~ 553 (554)
.|+.+++..+..... + ..++..+|+.. ..++.+..|| +||++
T Consensus 227 ~tv~e~l~~~~~~~~-d--~~lldt~Gl~~-~~~~~~~eLS---kqr~~ 268 (359)
T 2og2_A 227 TVLSKAVKRGKEEGY-D--VVLCDTSGRLH-TNYSLMEELI---ACKKA 268 (359)
T ss_dssp HHHHHHHHHHHHTTC-S--EEEEECCCCSS-CCHHHHHHHH---HHHHH
T ss_pred hhHHHHHHHHHhCCC-H--HHHHHhcCCCh-hhhhHHHHHH---HHHHH
Confidence 899999876432110 0 12456677643 3467788899 66654
No 206
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=1.9e-12 Score=131.23 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=38.9
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE---cCCCc----------eEEEEeccccc
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEV 172 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~~~~~----------~i~~v~Q~~~~ 172 (554)
++..|++++|+|+||||||||+++|+|+..|++|+|.+ +|.+. .+|||+|.|.+
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 45579999999999999999999999999999999998 55431 37999999854
No 207
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.08 E-value=6.1e-12 Score=127.53 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=71.0
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee----------eEEEEeccccc------------
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV----------LPNYFEQNQAE------------ 499 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~---~~~~~----------~~~y~~Q~~~~------------ 499 (554)
|++..|++++|+||||||||||+++|+|+..|++|+|.+ .|.++ ..+|++|.|..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 345679999999999999999999999999999999998 55433 24788888641
Q ss_pred --CCCCCCCHHHHHHhhcc---cCCHHHHHHHHhhCCCChhhhccccCcCCh
Q 008771 500 --ALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (554)
Q Consensus 500 --~l~~~~tv~e~l~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG 546 (554)
.++++.|+ +|+..... ......+..+|+.+++..+..++.|..||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 25678888 87765321 122346889999999977778899999996
No 208
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.07 E-value=1.8e-11 Score=127.22 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=66.7
Q ss_pred EEeeeeEe---cCC--ccce---------eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---
Q 008771 426 TIKNLEFG---YED--RLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (554)
Q Consensus 426 ~~~~l~~~---y~~--~~~l---------~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--- 488 (554)
++++++|. |++ ..++ ++++|.|.+|+.++|+||||||||||+++|+|+++|.+|.|.+++..-
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 56778877 753 2344 899999999999999999999999999999999999999999986321
Q ss_pred -----eEEEEe-cccccCCCCCCCHHHHHHhhc
Q 008771 489 -----LPNYFE-QNQAEALDLDKTVLETVAEAA 515 (554)
Q Consensus 489 -----~~~y~~-Q~~~~~l~~~~tv~e~l~~~~ 515 (554)
.++|++ |++...+....|+.++|..+.
T Consensus 217 ~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL 249 (361)
T ss_dssp TTCSSEEEEECC----------CCHHHHHHHHT
T ss_pred cccCCEEEEeecCccccccccccCHHHHHHHHH
Confidence 256887 764322236779999998763
No 209
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.06 E-value=2.2e-10 Score=115.61 Aligned_cols=136 Identities=14% Similarity=0.198 Sum_probs=88.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (554)
.+|++++|+|+|||||||++..|++.+.+++|. +|.++.+++. ..++.+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--------~V~lv~~D~~---r~~a~eqL~~---------------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--------KIAFITTDTY---RIAAVEQLKT---------------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--------CEEEEECCCS---STTHHHHHHH----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------EEEEEecCcc---cchHHHHHHH----------------
Confidence 479999999999999999999999999887772 4677777752 2233332210
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCe
Q 008771 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (554)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~l 280 (554)
+.+.+|++... ..+ +...+.+|++ +.+|++
T Consensus 156 -----------------------------------------~~~~~gl~~~~------~~~-~~~l~~al~~--~~~~dl 185 (296)
T 2px0_A 156 -----------------------------------------YAELLQAPLEV------CYT-KEEFQQAKEL--FSEYDH 185 (296)
T ss_dssp -----------------------------------------HHTTTTCCCCB------CSS-HHHHHHHHHH--GGGSSE
T ss_pred -----------------------------------------HHHhcCCCeEe------cCC-HHHHHHHHHH--hcCCCE
Confidence 01123332110 112 3444666664 489999
Q ss_pred EeecCCCCCCCHHHHHHH---HHHHcc--CCCeEEEE--ecCHHHHHhhcceEEEeeCCeee
Q 008771 281 LLLDEPTNHLDLDTIEWL---EGYLGK--QDVPMVII--SHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 281 LlLDEPt~~LD~~~~~~l---~~~l~~--~g~tvIii--sHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
+|+| |+++|+.....+ ...+.. ...+++++ +|+...+.++++++..+..+.++
T Consensus 186 vIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 186 VFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp EEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred EEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 9999 889998654433 334431 22345555 99999999999987766655543
No 210
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.05 E-value=4.4e-12 Score=128.58 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=49.0
Q ss_pred eeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCcee-------eEEEEeccccc
Q 008771 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGGEVLLGEHNV-------LPNYFEQNQAE 499 (554)
Q Consensus 428 ~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~-~~p~~G~i~~~~~~~-------~~~y~~Q~~~~ 499 (554)
+|+++.|+++.++++++|+| +|+|+||+|||||++.|+|. ..|.+| +.+.|.++ ..+|+.|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~-- 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER-- 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC----
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC--
Confidence 47888898888999999998 99999999999999999998 888888 65443322 134666652
Q ss_pred CCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 500 ~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+....||.|++.........+..+.++.. + .+..++.+..+|||+|||+.+
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l-~~~~~~~~~~~sgg~rqrv~~ 124 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--I-DEQFERYLHDESGLNRRHIID 124 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--H-HHHHHHHHHHHTSSCCTTCCC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--H-HHHHHHHHHHhCHHhhhhhhh
Confidence 344455666654332110000000111111 1 133567889999999999863
No 211
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.05 E-value=5e-14 Score=140.98 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=41.0
Q ss_pred CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC
Q 008771 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (554)
Q Consensus 109 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~ 159 (554)
...+|+++++.+++| ++|+||||||||||+++|+|...+ |.|.+++.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~ 78 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGP 78 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETT
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcH
Confidence 345789999999999 999999999999999999999876 67777654
No 212
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.05 E-value=2e-13 Score=129.91 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHH-HHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 270 LGK-ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 270 LAr-aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
.++ +++.+|.+++|||||+++|..+.+.+.+.|.....- +.++|. . ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhc--c--CCceEEEECCC
Confidence 456 788999999999999999988777776655431111 244562 1 56899987753
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.05 E-value=3.4e-11 Score=122.07 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=74.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee----------eEEEEecccccC---CCCCCCHHH
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV----------LPNYFEQNQAEA---LDLDKTVLE 509 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~---~~~~~----------~~~y~~Q~~~~~---l~~~~tv~e 509 (554)
++..|++++|+||||||||||+++|+ +..|.+|+|.+ .|..+ ..+|++|.|.-. +++..|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34569999999999999999999999 99999999988 55432 247899987321 1246788 7
Q ss_pred HHHhhcc---------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcc
Q 008771 510 TVAEAAE---------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552 (554)
Q Consensus 510 ~l~~~~~---------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl 552 (554)
++..... ......++++|+.+++.....++++..|||.+++++
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~ 296 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIK 296 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHH
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7732111 111235889999999986678899999998655554
No 214
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.03 E-value=4.8e-12 Score=118.32 Aligned_cols=80 Identities=19% Similarity=0.118 Sum_probs=49.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEC----CceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHH
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLG----EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~-~G~i~~~----~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 526 (554)
+++|+||||||||||+++|+|++... .|...-. ...-.++|++|+. ++.++ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~---------------~ 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT--------EGKKK---------------I 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET--------TCCEE---------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC--------cHHHH---------------H
Confidence 68999999999999999999998532 2321100 0011346777753 11111 1
Q ss_pred HhhCCCCh-hhhccccCcCChhhhhcccC
Q 008771 527 LGRCNFKA-DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 527 L~~~~l~~-~~~~~~~~~LSGGek~Rl~l 554 (554)
++.+++.. +.+++++..||||||||++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~l 87 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPI 87 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHH
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHH
Confidence 22333322 24678899999999999864
No 215
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.02 E-value=1.1e-10 Score=111.34 Aligned_cols=90 Identities=9% Similarity=-0.084 Sum_probs=64.6
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcc---cCCHHHH
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE---DWRIDDI 523 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~~~~~ 523 (554)
..+|+++||+|+||||||||+++|+|++.| .++|++|+....-....|+.+++..... ......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 578999999999999999999999998765 2568888753211245688887653321 2234556
Q ss_pred HHHHhhCCCChhhhccccCcCChhhh
Q 008771 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549 (554)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSGGek 549 (554)
...+..+++. +.+.+++..+|+|++
T Consensus 71 ~~~l~~~~~~-~~~~~~~~~~s~g~~ 95 (211)
T 3asz_A 71 LEHAQALLRG-LPVEMPVYDFRAYTR 95 (211)
T ss_dssp HHHHHHHHTT-CCEEECCEETTTTEE
T ss_pred HHHHHHHHcC-CCcCCCcccCcccCC
Confidence 7777777764 356788999999975
No 216
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.02 E-value=6.6e-11 Score=126.53 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=50.6
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~ 160 (554)
.+.+++.. +..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~l~~l~~~--~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 8 KFRSLTLI--NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEEE--EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceeEEEEe--ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 34454432 34589999999999 9999999999999999999999999999999988753
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.02 E-value=1.2e-09 Score=106.24 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred cCCCeEeecCCCCCC--CHHH----HHHHHHHHccCCCeEEEEecCHHH--------HHhhcceEEEeeC
Q 008771 276 QDPDLLLLDEPTNHL--DLDT----IEWLEGYLGKQDVPMVIISHDRAF--------LDQLCTKIVETEM 331 (554)
Q Consensus 276 ~~p~lLlLDEPt~~L--D~~~----~~~l~~~l~~~g~tvIiisHd~~~--------l~~~~d~i~~l~~ 331 (554)
.+|+++++|+|++.+ |+.. ...|.+.+++.|.|||+++|.... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5422 233444556789999999998775 4578999999964
No 218
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.01 E-value=1.4e-10 Score=117.50 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=70.7
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
.++|...+|++++|+|+|||||||+++.|++.+.+..|+|.+.+ .+.. .....+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~---------~D~~---r~~a~eq------------- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA---------ADTF---RAAAIEQ------------- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE---------ECTT---CHHHHHH-------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc---------cccc---cHHHHHH-------------
Confidence 35666788999999999999999999999999988877776542 2211 0000010
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHH---HHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM---SLG 271 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv---~LA 271 (554)
+..+++.+|++. +..+|||+.+++ +|+
T Consensus 151 --------------------------------------------L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 151 --------------------------------------------LKIWGERVGATV------ISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp --------------------------------------------HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHHcCCcE------EecCCccCHHHHHHHHHH
Confidence 011122335431 236789999999 999
Q ss_pred HHHccCCCeEeecCCCC
Q 008771 272 KILLQDPDLLLLDEPTN 288 (554)
Q Consensus 272 raL~~~p~lLlLDEPt~ 288 (554)
+++..+|+++|+|||..
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 99999999999999975
No 219
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.01 E-value=2.3e-11 Score=125.44 Aligned_cols=106 Identities=17% Similarity=0.064 Sum_probs=69.8
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEC-Cce------eeEEEEecccccCCCCCCCHHHHHH
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLG-EHN------VLPNYFEQNQAEALDLDKTVLETVA 512 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~-p~~G~i~~~-~~~------~~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (554)
+++++. .+|++++|+|+||||||||+++|+|... |..|.|.+. |.. ...+|++|+. .+....+|.++.
T Consensus 207 ~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~--~l~dtpgv~e~~- 282 (358)
T 2rcn_A 207 KPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG--DVIDSPGVREFG- 282 (358)
T ss_dssp HHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSC--EEEECHHHHTCC-
T ss_pred HHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCC--EecCcccHHHhh-
Confidence 444443 4799999999999999999999999999 999999875 421 2356778764 244445666531
Q ss_pred hhcccCCHH----HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 513 EAAEDWRID----DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 513 ~~~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
....... .+.+++..+++. +..++++..|| ||++|++|
T Consensus 283 --l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~al 324 (358)
T 2rcn_A 283 --LWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAV 324 (358)
T ss_dssp --CCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHH
T ss_pred --hcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHH
Confidence 1112222 234567777874 45789999999 99999864
No 220
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.94 E-value=2.3e-11 Score=123.14 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE---cCCCc---------eEEEEeccccccc----CccHHHH
Q 008771 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM---------KIAFLSQEFEVSM----SRTVREE 181 (554)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~~~~~---------~i~~v~Q~~~~~~----~~tv~e~ 181 (554)
+++.+|++++|+|+||+|||||+++|+|+..|+.|+|.+ .|... .++|++|.|.+.. ..|+ ++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 566789999999999999999999999999999999987 44321 1689999987654 5678 77
Q ss_pred HHHhh
Q 008771 182 FMSAF 186 (554)
Q Consensus 182 ~~~~~ 186 (554)
+...+
T Consensus 247 l~~~f 251 (307)
T 1t9h_A 247 LGYTF 251 (307)
T ss_dssp HGGGS
T ss_pred HHHHH
Confidence 74333
No 221
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.92 E-value=2.2e-10 Score=122.54 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=47.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
.+|+++||+|.+ |+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 479999999999 99999999999999999999999999999999988654
No 222
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.88 E-value=3.1e-11 Score=129.95 Aligned_cols=174 Identities=15% Similarity=0.162 Sum_probs=96.8
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHHC--CCCCCceeEEEcCCCceEEEEecccccccCc--cHHHHHHHhhHHHH
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEM 190 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~--tv~e~~~~~~~~~~ 190 (554)
.+++.+.++..+.|+|.+||||||+++.|.. ++.++.|++.+...+.+- .-++.....+.. +|..+...+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a~---- 233 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDAA---- 233 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHHH----
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHHH----
Confidence 3678888999999999999999999999876 455555666543222110 001111111211 1211111000
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc-cC-CCCCCCChhHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-GD-RLVASFSSGWQMRM 268 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-~~-~~~~~LSGGqrqRv 268 (554)
..+..+ ..++++|. ++|..+|+.... .+ +....+|+||+|+.
T Consensus 234 ---~~L~~~--------------------------------~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~ 277 (512)
T 2ius_A 234 ---NALRWC--------------------------------VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPD 277 (512)
T ss_dssp ---HHHHHH--------------------------------HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBC
T ss_pred ---HHHHHH--------------------------------HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccc
Confidence 000000 11233343 445556653211 01 11134677876642
Q ss_pred ----------HHHHHHccCCC-eEeecCCCCCCCHHH---HHHHHHHH---ccCCCeEEEEecCHH-------HHHhhcc
Q 008771 269 ----------SLGKILLQDPD-LLLLDEPTNHLDLDT---IEWLEGYL---GKQDVPMVIISHDRA-------FLDQLCT 324 (554)
Q Consensus 269 ----------~LAraL~~~p~-lLlLDEPt~~LD~~~---~~~l~~~l---~~~g~tvIiisHd~~-------~l~~~~d 324 (554)
.+|+++...|. ++++||++..+|... .+.|..+. ++.|.++|++||++. ...++.+
T Consensus 278 ~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~ 357 (512)
T 2ius_A 278 PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPT 357 (512)
T ss_dssp TTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCE
T ss_pred cccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCC
Confidence 35667788898 899999999998432 22222222 346999999999987 5667777
Q ss_pred eEEEe
Q 008771 325 KIVET 329 (554)
Q Consensus 325 ~i~~l 329 (554)
||++-
T Consensus 358 RI~lr 362 (512)
T 2ius_A 358 RIAFT 362 (512)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 87653
No 223
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.88 E-value=4.1e-10 Score=128.67 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=29.7
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 443 vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.++.+.++..+.|+||+|||||||.++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 466788999999999999999999999998764
No 224
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.87 E-value=7.7e-11 Score=120.89 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=47.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
.++++++|.|.+|+.++|+||||||||||+++|+|+++|++|.|.+++.+
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 47899999999999999999999999999999999999999999998753
No 225
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.86 E-value=1.6e-11 Score=126.26 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=81.5
Q ss_pred EEeeeeEecCCccceeceEEEEecC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCcee------
Q 008771 426 TIKNLEFGYEDRLLFNRANLTIERG-------EKTAIIGPNGCGKSTLLKLIMGLE----KPRGGEVLLGEHNV------ 488 (554)
Q Consensus 426 ~~~~l~~~y~~~~~l~~vs~~i~~G-------e~iaIvG~NGsGKSTLlk~L~G~~----~p~~G~i~~~~~~~------ 488 (554)
+.++++..|+...+++++++.|..| +.++|+||||||||||+++|+|.+ .+.+|.+...+.++
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 3455666677667888899999877 899999999999999999999987 66677665433221
Q ss_pred ----eEEEEecccccCCCCCCCHHHHHHhhcccC----------CHHHHHHHHhhCCCChhhhccccCcCChhhhhccc
Q 008771 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAEDW----------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~----------~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~ 553 (554)
.+.|++|.+ .+.. ++.+++....... ....+...+..+++-. ...++..||+|+++|+.
T Consensus 100 ~~~~~v~~iDE~~--~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 100 LERGDVLFIDEIH--RLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp CCTTCEEEEETGG--GCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTTCS
T ss_pred ccCCCEEEEcchh--hcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHhcC
Confidence 356778764 3433 6777775332111 1123445566677643 57788999999999985
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.84 E-value=2.8e-10 Score=121.34 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=60.3
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eEEEEecccccCCCCC
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLD 504 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------------~~~y~~Q~~~~~l~~~ 504 (554)
+++||++.+|++++|+|+||||||||+++|+|+++|.+|+|.+.+.+. .++|++|+. .+++.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~--~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT--GADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST--TCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc--CcCHH
Confidence 578899999999999999999999999999999999999999864332 246888874 45677
Q ss_pred CCHHHHHHhh
Q 008771 505 KTVLETVAEA 514 (554)
Q Consensus 505 ~tv~e~l~~~ 514 (554)
.+|.+++..+
T Consensus 362 ~tV~e~l~~a 371 (503)
T 2yhs_A 362 SVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7899998754
No 227
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.83 E-value=1.3e-10 Score=115.18 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=50.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCcee
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNV 488 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~-~G~i~~~~~~~ 488 (554)
++++++++. .+|++++ +.+|++++|+||||||||||+++|+|+++|. +|.|.+.+.++
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 456666653 4789998 9999999999999999999999999999998 99998887654
No 228
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.82 E-value=1.1e-10 Score=108.30 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=31.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCce
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHN 487 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~~p~---~G~i~~~~~~ 487 (554)
++++|+|+||||||||+++|+|+++|. .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 589999999999999999999999998 8999988754
No 229
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=3.5e-10 Score=107.09 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=41.5
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC----------CceEEEEecccccccCccHHH
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------NMKIAFLSQEFEVSMSRTVRE 180 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~----------~~~i~~v~Q~~~~~~~~tv~e 180 (554)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+. ...++|++|++..+..+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 67888999999999999999999999999974 3443321 124778888876554444433
No 230
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.81 E-value=3.4e-10 Score=106.66 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=37.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
||+++|+||||||||||+++|+|+++ ++| |.++|.+. ..+|++|+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEe
Confidence 79999999999999999999999999 889 87765433 23566665
No 231
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.80 E-value=1e-10 Score=113.35 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=43.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~ 159 (554)
.|+++|+...|+. +|+|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 4788888765532 566666 899999999999999999999999999999988763
No 232
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.79 E-value=1.2e-09 Score=110.71 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=54.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eEEEEecccccCCCCCCCHHHHHH
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLDKTVLETVA 512 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------------~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (554)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|++|++ .+++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~--~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE--GTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCT--TCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCC--CCCHHHHHHHHHH
Confidence 6999999999999999999999999999999999987654 146888875 4667778999886
Q ss_pred hh
Q 008771 513 EA 514 (554)
Q Consensus 513 ~~ 514 (554)
.+
T Consensus 179 ~~ 180 (304)
T 1rj9_A 179 AM 180 (304)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.78 E-value=6.9e-10 Score=112.25 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=59.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee-------e--EEEEecccccCC-CC-CCCHHHHH
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV-------L--PNYFEQNQAEAL-DL-DKTVLETV 511 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~---~~~~~-------~--~~y~~Q~~~~~l-~~-~~tv~e~l 511 (554)
++.+|++++|+|+||+|||||+++|+|...|..|.|.+ .|..+ . .+|+.|.|.-.. .+ ..|+ +++
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 34579999999999999999999999999999999987 44322 1 478999874221 11 5788 887
Q ss_pred Hhhcc-----------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhh
Q 008771 512 AEAAE-----------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKI 550 (554)
Q Consensus 512 ~~~~~-----------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~ 550 (554)
....+ ......++++|+.+++.....+ +...|+.|.++
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~ 302 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKD 302 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhh
Confidence 32111 1112358889999999754434 44455556655
No 234
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.76 E-value=1.3e-09 Score=120.76 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=101.7
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc-eeEEEcCCC-----ceEEEEeccccccc
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSN-----MKIAFLSQEFEVSM 174 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-G~I~~~~~~-----~~i~~v~Q~~~~~~ 174 (554)
++++.-|+...+++++++.+..|+.++|+||||+|||||+++|+++.++.. |.+.+.+.. ..++|+|+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~-- 115 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGR-- 115 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHH--
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHH--
Confidence 344445777889999999999999999999999999999999999999887 677665432 357787765311
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc---ccHHHHHHHHhhhcCCCcc
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL---DTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~lgl~~~ 251 (554)
.+.+............. ......... ....+. .+. .+..... .........++..+...
T Consensus 116 --~~~e~~~~~~~~~~~~r-~~~~~~~~~-~~~~nl-~v~-----------~~~~~~~~~v~~~~~~~~~L~G~~~~~-- 177 (604)
T 3k1j_A 116 --RIVEKYREKAKSQESVK-SSNMRLKST-VLVPKL-LVD-----------NCGRTKAPFIDATGAHAGALLGDVRHD-- 177 (604)
T ss_dssp --HHHHHHHHHHHHHTCC-------------CCCEE-EEC-----------CTTCSSCCEEECTTCCHHHHHCEECCC--
T ss_pred --HHHHHHHHhhccchhhh-hhccccccc-ccccce-eec-----------cccCCCCCEEEcCCCCHHhcCceEEec--
Confidence 11111100000000000 000000000 000000 000 0000000 00000112222222111
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
......+|+|++|++..++....++.+|+|||... |++.....|.+.|.
T Consensus 178 --~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 178 --PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp --CC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred --hhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 11225699999999999999999999999999988 89999999988885
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.75 E-value=1.7e-09 Score=103.18 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=26.8
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
+++++ .+|.+||+++|+||||||||||+++|+|+++.
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~ 46 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN 46 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 46676 69999999999999999999999999999863
No 236
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.75 E-value=1.7e-09 Score=100.54 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=62.0
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---------ECC-------ceeeEEEEecccccCCCCC
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL---------LGE-------HNVLPNYFEQNQAEALDLD 504 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~---------~~~-------~~~~~~y~~Q~~~~~l~~~ 504 (554)
++++|++.+| +++|+||||||||||+++|.+++.+..|... ..+ ....+..++|++...++++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6788999999 9999999999999999999998877655321 111 1123456677754444332
Q ss_pred ---CCHHHHHHhh--------cccCCHHHHHHHHhhCCCChhhh
Q 008771 505 ---KTVLETVAEA--------AEDWRIDDIKGLLGRCNFKADML 537 (554)
Q Consensus 505 ---~tv~e~l~~~--------~~~~~~~~~~~~L~~~~l~~~~~ 537 (554)
.+|...+... .......++..+|..++|.++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~ 140 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY 140 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC
Confidence 2222221110 11234678899999999976543
No 237
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.75 E-value=2.8e-09 Score=115.39 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=46.1
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
.++++++|.|.+|+.++|+||||||||||+++|+|+++|++|.|.+.+..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 46788999999999999999999999999999999999999999987653
No 238
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.74 E-value=2e-10 Score=116.68 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=65.3
Q ss_pred eEEEeeeeEecCCccceeceEEEE-------------------ecCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTI-------------------ERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVL 482 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i-------------------~~Ge~iaIvG~NGsGKSTLlk~L~G~~~--p~~G~i~ 482 (554)
.|+++++++.|. +++++++|.+ .+|++|||+|+||||||||+++|+|++. |++|.|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 477899999994 5888999988 9999999999999999999999999988 9999998
Q ss_pred E---CCceee------EEEEecccccCCCCCCCHHHHHHh
Q 008771 483 L---GEHNVL------PNYFEQNQAEALDLDKTVLETVAE 513 (554)
Q Consensus 483 ~---~~~~~~------~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (554)
+ ++.... .+++ |+. .++...++.+++..
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~--~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKK--GFPESYDMHRLVKF 151 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCT--TSGGGBCHHHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecC--CCCCCccHHHHHHH
Confidence 8 654321 1233 432 23455577776543
No 239
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.74 E-value=7.1e-09 Score=110.93 Aligned_cols=178 Identities=14% Similarity=0.080 Sum_probs=102.0
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (554)
.+.|+++..-+++|+.+.|.|++|+|||||+..|++...+..| ..|.|+.-+ ++..+........
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--------~~Vl~~s~E------~s~~~l~~r~~~~- 254 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--------ENVAIFSLE------MSAQQLVMRMLCA- 254 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--------CCEEEEESS------SCHHHHHHHHHHH-
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--------CcEEEEECC------CCHHHHHHHHHHH-
Confidence 3468888878999999999999999999999999987655333 134555533 2222111000000
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHH
Q 008771 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (554)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (554)
.. ..+ ...+. ...+... ...++.+.+..++......+. ...+|.++.+ +
T Consensus 255 ------------~~--~~~-~~~l~------------~g~l~~~-~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~ 303 (454)
T 2r6a_A 255 ------------EG--NIN-AQNLR------------TGKLTPE-DWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--A 303 (454)
T ss_dssp ------------HH--TCC-HHHHH------------TSCCCHH-HHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--H
T ss_pred ------------Hc--CCC-HHHHh------------cCCCCHH-HHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--H
Confidence 00 000 00000 0000000 111233333333322222222 3579999987 4
Q ss_pred HHHHHc--cCCCeEeecCCCCCCCH--------HHHHHHHHHH----ccCCCeEEEEec---------C--HH-------
Q 008771 270 LGKILL--QDPDLLLLDEPTNHLDL--------DTIEWLEGYL----GKQDVPMVIISH---------D--RA------- 317 (554)
Q Consensus 270 LAraL~--~~p~lLlLDEPt~~LD~--------~~~~~l~~~l----~~~g~tvIiisH---------d--~~------- 317 (554)
.++.+. .+|+++|+|+++...+. .....+...| ++.+.+||+++| | +.
T Consensus 304 ~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~S 383 (454)
T 2r6a_A 304 KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRES 383 (454)
T ss_dssp HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTT
T ss_pred HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhcc
Confidence 555554 78999999999998743 2223333333 467999999999 3 22
Q ss_pred -HHHhhcceEEEeeCCe
Q 008771 318 -FLDQLCTKIVETEMGV 333 (554)
Q Consensus 318 -~l~~~~d~i~~l~~g~ 333 (554)
.+.+.||.|++|..+.
T Consensus 384 g~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 384 GSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSHHHHCSEEEEEEETT
T ss_pred chhHhhCCEEEEEeccc
Confidence 4677899999997654
No 240
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.74 E-value=7.7e-09 Score=105.61 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=29.0
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+++|++.+| +.+|+|+||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 3578888899 99999999999999999998543
No 241
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.73 E-value=1.1e-08 Score=105.69 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=47.4
Q ss_pred HHHHHHHHHccC--CCeEeecCCCCCC----------CH----HH---HHHHHH---HHccCCCeEEEEecCHH------
Q 008771 266 MRMSLGKILLQD--PDLLLLDEPTNHL----------DL----DT---IEWLEG---YLGKQDVPMVIISHDRA------ 317 (554)
Q Consensus 266 qRv~LAraL~~~--p~lLlLDEPt~~L----------D~----~~---~~~l~~---~l~~~g~tvIiisHd~~------ 317 (554)
+-+.++++++.+ |+++|+|||++.+ |. .. .+.+.+ .+++.+.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677777654 9999999999998 32 11 122222 34667999999999653
Q ss_pred ----------HHHhhcceEEEeeCCee
Q 008771 318 ----------FLDQLCTKIVETEMGVS 334 (554)
Q Consensus 318 ----------~l~~~~d~i~~l~~g~~ 334 (554)
.+..+||.++.++.+..
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeee
Confidence 25678999988877654
No 242
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.73 E-value=1.2e-10 Score=119.75 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=55.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
++++++++.|+...++++++|++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 455667777765678999999999999999999999999999999999999999999876543
No 243
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.73 E-value=3e-11 Score=120.78 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=64.2
Q ss_pred ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------EEEEecccccCCCCCCC
Q 008771 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKT 506 (554)
Q Consensus 437 ~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------~~y~~Q~~~~~l~~~~t 506 (554)
..+|++++|.+.+| ++|+||||||||||+++|+|...+ |.+.+.+.++. +++++|... ...+..+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVI 107 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeE
Confidence 34788899999999 999999999999999999999887 67777765441 122333210 1122223
Q ss_pred HHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 507 v~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+.|++.......... ..+......++.+..|||||++|+.|
T Consensus 108 ~~Deid~~~~~r~~~-------~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR-------ETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp EEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred eeehhhhhhcccCCC-------cchHHHHHHHHHHHhhhcccccCCEE
Confidence 333332211100000 00111234677888999999998653
No 244
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.71 E-value=2.2e-12 Score=129.12 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=47.1
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 4566777777677899999999999 99999999999999999999875 67776653
No 245
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.71 E-value=3.6e-09 Score=102.49 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=22.9
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHH-CCCC
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-GQEE 148 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~-G~~~ 148 (554)
...+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999 9983
No 246
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.70 E-value=6.2e-10 Score=123.32 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=49.4
Q ss_pred eEEEeeeeEecCC--ccceece----------EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCcee--
Q 008771 424 VVTIKNLEFGYED--RLLFNRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNV-- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~--~~~l~~v----------s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p-~~G~i~~~~~~~-- 488 (554)
.++++++++.|+. +++++.+ +|+++. +||+|+||||||||+++|+|+..| ++|.|.++|.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5788999999964 2333332 366654 999999999999999999999989 799998887664
Q ss_pred -----------eEEEEecccccCCCCCCCHHHHHHhh
Q 008771 489 -----------LPNYFEQNQAEALDLDKTVLETVAEA 514 (554)
Q Consensus 489 -----------~~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (554)
.++|++|++ .+.+..||.+++..+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~--~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEI--EISDASEVEKEINKA 121 (608)
T ss_dssp EECSSSSCCEEEESCC---C--CCCCHHHHHTTHHHH
T ss_pred ecCCccccceeEEeeecccc--cCCCHHHHHHHHHHH
Confidence 235778874 466778999988654
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.66 E-value=4.4e-09 Score=101.43 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=40.7
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCceee------EEEEeccc
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVL------PNYFEQNQ 497 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p--~~G~i~~~~~~~~------~~y~~Q~~ 497 (554)
-.+++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.. ++|++|++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~ 71 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 71 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence 46899999999999999999999999999986 6888877654332 35788764
No 248
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.64 E-value=1.2e-08 Score=95.56 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 267 Rv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
.+.+|++|+.+|+++++| ||++|..+++.+.+.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 367899999999999999 99999999988887764
No 249
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.63 E-value=1.4e-09 Score=106.88 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=36.4
Q ss_pred ccEEEEeE-EEEe-CCeeeEEceeEEEEC---CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 96 SGVKLENI-SKSY-KGVTVLKDVTWEVKK---GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 96 ~~i~~~~l-s~~y-~~~~~l~~isl~i~~---Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++|+++|+ +|+| ++.++|+|+||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46999999 9999 777899999999999 9999999999999999999999865
No 250
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.63 E-value=6.8e-09 Score=100.57 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh-CCC
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-GLE 474 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~-G~~ 474 (554)
...++||++.+|++++|+||||||||||+++|+ |++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999999999999999 998
No 251
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.63 E-value=5.4e-09 Score=106.89 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=54.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------------EEEEecccccCCCCCCCHHHH
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------------PNYFEQNQAEALDLDKTVLET 510 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------------~~y~~Q~~~~~l~~~~tv~e~ 510 (554)
..+|++++|+||||||||||++.|+|+++|.+|+|.+.+.++. +.|++|.. .+++..+|.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHH
Confidence 3689999999999999999999999999999999998876541 23777763 57788899999
Q ss_pred HHhh
Q 008771 511 VAEA 514 (554)
Q Consensus 511 l~~~ 514 (554)
+..+
T Consensus 204 l~~~ 207 (328)
T 3e70_C 204 IQHA 207 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 252
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.61 E-value=1.3e-10 Score=120.97 Aligned_cols=149 Identities=15% Similarity=0.030 Sum_probs=82.8
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE-cCCC----ceEEEEecccccc-cCccHHHHHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-AKSN----MKIAFLSQEFEVS-MSRTVREEFMS 184 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~-~~~~----~~i~~v~Q~~~~~-~~~tv~e~~~~ 184 (554)
.+|+++++.+++|++++|+||||||||||+++|+|. ..|.+.. .... ..++++||.+.++ .+.+....+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999985 4677765 2111 1356666665321 11111100000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH
Q 008771 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
... . .........+.+ .....-.-.+...-...+ ..-+.....+.....+++|+
T Consensus 234 ~l~-----------------~-~~~~~~~~~l~~-------~ldG~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~~~ 287 (377)
T 1svm_A 234 DLP-----------------S-GQGINNLDNLRD-------YLDGSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPKTL 287 (377)
T ss_dssp TCC-----------------C-CSHHHHHHTTHH-------HHHCSSCEEECCSSSCCE-EECCCCEEEEECSCCCCHHH
T ss_pred hcc-----------------c-cCcchHHHHHHH-------HhcCCCeEeeccCchhhH-HHhhcCcccChhHHhhcHHH
Confidence 000 0 000000000000 000000000000000000 12233334556677899999
Q ss_pred HHHHHHHHHHccCCCeEe-ecCCCC
Q 008771 265 QMRMSLGKILLQDPDLLL-LDEPTN 288 (554)
Q Consensus 265 rqRv~LAraL~~~p~lLl-LDEPt~ 288 (554)
++|++.+.+++..|++++ ||+|+.
T Consensus 288 ~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 288 QARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHHhhhhccCCCCCeEEEEeCCHH
Confidence 999999888999999998 999998
No 253
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.57 E-value=5.4e-09 Score=99.03 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=36.6
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLL 483 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~-----~p~~G~i~~ 483 (554)
.|+++|++|.|+. .++++ |.+.+|++++|+|+||||||||++.|+|.. .|+.|.+..
T Consensus 3 ~l~~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 4789999999963 56776 899999999999999999999999999998 788887643
No 254
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.57 E-value=5.2e-09 Score=110.07 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=52.7
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCc-eeeEEEEeccc
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEH-NVLPNYFEQNQ 497 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~--iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~---~~~-~~~~~y~~Q~~ 497 (554)
.+++++ ++.|++.+ ++++||+|++|++ ++|+|+||||||||+++|+|+.- .|.... .+. .-.++|++|+.
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~ 91 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQES 91 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC-
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecC
Confidence 355666 78888766 9999999999999 99999999999999999999842 121110 011 11356788864
Q ss_pred ccCCCCCCCHHHHHH
Q 008771 498 AEALDLDKTVLETVA 512 (554)
Q Consensus 498 ~~~l~~~~tv~e~l~ 512 (554)
.+.+..||.|++.
T Consensus 92 --~l~~~ltv~D~~~ 104 (427)
T 2qag_B 92 --NVRLKLTIVSTVG 104 (427)
T ss_dssp ---CEEEEEEEEEEC
T ss_pred --ccccccchhhhhh
Confidence 2434556666553
No 255
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.56 E-value=1.1e-09 Score=106.18 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=42.0
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3778888654431 566666 89999999999999999999999999999988876443
No 256
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.54 E-value=1.2e-07 Score=98.04 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeec-CCCCCCCHHHHHHHHHHHcc-C-CCeEEEEe--cCHH
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLD-EPTNHLDLDTIEWLEGYLGK-Q-DVPMVIIS--HDRA 317 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-g~tvIiis--Hd~~ 317 (554)
+.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.. . +.++|+|. ||+.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 3456789999998876 55556677789999 99999998876555444432 2 78899998 8864
No 257
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.54 E-value=3.2e-08 Score=91.87 Aligned_cols=57 Identities=25% Similarity=0.207 Sum_probs=45.1
Q ss_pred EceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE---------EcC-------CCceEEEEecccc
Q 008771 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAK-------SNMKIAFLSQEFE 171 (554)
Q Consensus 114 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~---------~~~-------~~~~i~~v~Q~~~ 171 (554)
++++|.+.+| +++|+|+||||||||+++|.+++.+..|... ..+ ....|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6789999999 9999999999999999999998887666421 111 2346888998863
No 258
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.51 E-value=7e-09 Score=101.98 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=36.4
Q ss_pred CceEEEeee-eEec-CCccceeceEEEEec---CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 422 RSVVTIKNL-EFGY-EDRLLFNRANLTIER---GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 422 ~~~l~~~~l-~~~y-~~~~~l~~vs~~i~~---Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.++++++|+ ++.| ++..+++++||+|.+ |++|+|+|++||||||+.++|++.+.
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357999999 9999 667899999999999 99999999999999999999988543
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.51 E-value=4.5e-08 Score=91.39 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=61.9
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee--------EEEEecccccCCCCCCCHHHHHHhhccc
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAED 517 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~--------~~y~~Q~~~~~l~~~~tv~e~l~~~~~~ 517 (554)
.|.+|++++|+||||||||||+++|+|. |..|.|.+++.++. .+|++|... ...+|.+++......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 5789999999999999999999999998 77899988875431 234444321 235677776543210
Q ss_pred C---C-HHHHHHHHhhCCCChhhh--ccccCcCChhhhhccc
Q 008771 518 W---R-IDDIKGLLGRCNFKADML--DRKVSLLSGGEKIILL 553 (554)
Q Consensus 518 ~---~-~~~~~~~L~~~~l~~~~~--~~~~~~LSGGek~Rl~ 553 (554)
. . ...+..++..+++. ... +.++..+|+|++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEA 119 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHH
T ss_pred HhccCCeEEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHH
Confidence 0 0 00001112222221 111 4466789999999875
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.50 E-value=5.1e-08 Score=92.03 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=26.8
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
||++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57889999999999999999999999999964
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.48 E-value=1.2e-08 Score=96.50 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=31.6
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~ 160 (554)
.++.++|++++|+|+||||||||+++|++.+ |.+.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~ 62 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA 62 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence 4667899999999999999999999999977 888887643
No 262
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.45 E-value=1.1e-07 Score=90.13 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc-CCCeEEEEecCHHHH--HhhcceEEEeeC
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFL--DQLCTKIVETEM 331 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~g~tvIiisHd~~~l--~~~~d~i~~l~~ 331 (554)
.+.|+.+|..++..+..+|+.+.++ ++.++|.....+.+.+.. .+.++|+.+|.+.+. ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999998888765444 345677777777766653 356788888987665 567999998864
No 263
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.43 E-value=9.4e-08 Score=100.73 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=41.2
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
..|.++|+++.|+++.++++++|+| +|+|+||||||||+++|+|...|..|
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 3588999999998888999999998 99999999999999999999875444
No 264
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.43 E-value=2.1e-09 Score=108.49 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=39.1
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
++++|+ +|++++|+|+|||||||++..|++.+.+..|.|.+.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 345666 8999999999999999999999999998888887765443
No 265
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.42 E-value=2e-07 Score=96.07 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.4
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
=|++|+++.|+||+|||||||+..+++...+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877665654
No 266
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.40 E-value=1.9e-07 Score=106.20 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCC-CCCHHHHHHHHHHHc---cCCCeEEE-EecCHHHHHhhcceE
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVI-ISHDRAFLDQLCTKI 326 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~---~~g~tvIi-isHd~~~l~~~~d~i 326 (554)
..+.-+|+|+.+|..+++.++.++++||+|||.. +||......+...+. ....+|++ +||+.+.+..+++..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 4456789999999999999999999999999997 999876544444332 22456666 399988887777643
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.39 E-value=1.3e-07 Score=90.64 Aligned_cols=64 Identities=27% Similarity=0.361 Sum_probs=43.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCC-------CceEEEECCcee----eEEEEecccccCCCCCCCHHHHHH
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-------RGGEVLLGEHNV----LPNYFEQNQAEALDLDKTVLETVA 512 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p-------~~G~i~~~~~~~----~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (554)
-|++||+++|+||||||||||+++|+|...+ ..|.+++++... ..+++.|.. .++++ ++.+++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~--~~~~~-~~~~~~~ 95 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR--GLDPD-EVLKHIY 95 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT--TSCHH-HHHHTEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHc--CCCHH-HHhhcEE
Confidence 6899999999999999999999999996555 334666655432 122444442 23332 6666654
No 268
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.39 E-value=5.8e-08 Score=97.57 Aligned_cols=95 Identities=16% Similarity=0.013 Sum_probs=61.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEE-EEecccccCCCCCCCHHHHHHhhc-----------c
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-YFEQNQAEALDLDKTVLETVAEAA-----------E 516 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~-y~~Q~~~~~l~~~~tv~e~l~~~~-----------~ 516 (554)
++.+|+|+|++|||||||+++|++++.+. | ...... ++.|+.. + ...++.+++.... +
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f--~-~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDF--Y-LTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGG--B-CCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccc--c-CChHHHHHHhccccccchhhhccCc
Confidence 57799999999999999999999998763 2 012223 4488742 2 4568888876542 1
Q ss_pred -cCCHHHHHHHHhhCCCCh-----h--hhccccCcCChhhhhccc
Q 008771 517 -DWRIDDIKGLLGRCNFKA-----D--MLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 517 -~~~~~~~~~~L~~~~l~~-----~--~~~~~~~~LSGGek~Rl~ 553 (554)
......+...|..+.-.. . .+......+||||++|+.
T Consensus 100 ~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~ 144 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCP 144 (290)
T ss_dssp TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECS
T ss_pred chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccc
Confidence 122344555665553220 1 123445789999999975
No 269
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.38 E-value=9.7e-08 Score=95.19 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=62.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce----eeEEEEecccccCCCCCCCHHHHHHhhcccCCHH
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN----VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~----~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~ 521 (554)
.+.+|++++|+||||||||||++.|++... .|.+++ |.. -.+.|+..+.. . ..+...+..........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~ 97 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAE 97 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChh
Confidence 378999999999999999999999998654 354433 221 12456654321 1 11222222222223444
Q ss_pred HHHHHHhhCCCChhhhccccCcCChhhhhcc
Q 008771 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552 (554)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl 552 (554)
....++..+.+.. ..++++..||+||.+++
T Consensus 98 ~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i 127 (279)
T 1nlf_A 98 ERQAVADGLLIQP-LIGSLPNIMAPEWFDGL 127 (279)
T ss_dssp HHHHHHHHEEECC-CTTSCCCTTSHHHHHHH
T ss_pred hhhhccCceEEee-cCCCCcccCCHHHHHHH
Confidence 5566677777643 45788999999998875
No 270
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.38 E-value=1.8e-07 Score=88.03 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
...|++|+.+|+++++| ||++|..+++.+.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 34588999999999999 99999998888777654
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.37 E-value=8.2e-08 Score=91.40 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=28.7
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
..+|++|+|+||||||||||+++|+|++.|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999864
No 272
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.37 E-value=3.9e-08 Score=111.07 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=53.1
Q ss_pred eEEEeeeeEec---CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCceeeEEEEeccccc
Q 008771 424 VVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAE 499 (554)
Q Consensus 424 ~l~~~~l~~~y---~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~-p~~G~i~~~~~~~~~~y~~Q~~~~ 499 (554)
.+++++..... ++..++++++|+ |++++|+||||||||||+|+|+|+.. +..|.+... ....++|++|
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~---- 621 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG---- 621 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE----
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH----
Confidence 46777765444 345689999998 99999999999999999999999874 677765322 2223455554
Q ss_pred CCCCCCCHHHHHHh
Q 008771 500 ALDLDKTVLETVAE 513 (554)
Q Consensus 500 ~l~~~~tv~e~l~~ 513 (554)
++...++.|++..
T Consensus 622 -i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 622 -IYTRIGASDDLAG 634 (765)
T ss_dssp -EEEECCC------
T ss_pred -hhccCCHHHHHHh
Confidence 2233466666543
No 273
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.36 E-value=2.2e-08 Score=114.82 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=41.3
Q ss_pred eEEEeeeeEec-------CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 424 VVTIKNLEFGY-------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 424 ~l~~~~l~~~y-------~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+.+++..... ++..++++++|++.+|++++|+||||||||||||+|+++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 56676665433 245689999999999999999999999999999999753
No 274
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.36 E-value=1.4e-08 Score=96.22 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=44.1
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE--EEcC
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--IKAK 158 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I--~~~~ 158 (554)
+|+++.++...+.+..++..++|++++|+|+||||||||+++|++.+. ..|.+ ++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 467777777778888888889999999999999999999999999987 67876 6554
No 275
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.35 E-value=1.3e-07 Score=91.93 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=40.6
Q ss_pred EEEeeeeEecCCccceece-EEEEecCCEEEEECCCCCcHHHHHHHHh--CCCCCCceEEEECC
Q 008771 425 VTIKNLEFGYEDRLLFNRA-NLTIERGEKTAIIGPNGCGKSTLLKLIM--GLEKPRGGEVLLGE 485 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~v-s~~i~~Ge~iaIvG~NGsGKSTLlk~L~--G~~~p~~G~i~~~~ 485 (554)
++++.++..++. ++.+ .-.|++||+++|+||||||||||+++|+ |+..+..|.+++.+
T Consensus 7 ~~~~~i~tg~~~---lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 7 QPVRRVKSGIPG---FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp -CCCEECCSCTT---TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cccceeecCCHh---HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 344555555542 2222 1168999999999999999999999999 66456666666654
No 276
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.34 E-value=2.7e-06 Score=88.00 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=37.4
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc------CCCeEEEEecCHHHHHhhc
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~g~tvIiisHd~~~l~~~~ 323 (554)
.+|.+|++||+... |......|..++.+ .+.++|++||+..+...+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 99888888887743 4779999999987665544
No 277
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.33 E-value=4.1e-08 Score=101.98 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=40.2
Q ss_pred eeceEEEEec--CCEEEEECCCCCcHHHHHHHHhCCCCCCc----eEEEE
Q 008771 440 FNRANLTIER--GEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLL 483 (554)
Q Consensus 440 l~~vs~~i~~--Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~----G~i~~ 483 (554)
...|+++|.+ |++++|+|+||||||||+++|+|++.|.+ |.+.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 4568999999 99999999999999999999999999998 77654
No 278
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.30 E-value=2.3e-07 Score=107.93 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=44.4
Q ss_pred CCceEEEee-----eeEec-CCccceeceEEEEec-------CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 421 GRSVVTIKN-----LEFGY-EDRLLFNRANLTIER-------GEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 421 ~~~~l~~~~-----l~~~y-~~~~~l~~vs~~i~~-------Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
....|++++ +++.| ++..++++++|++.+ |++++|+||||||||||||+| |++.+
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 345799999 99888 666799999999987 999999999999999999999 98764
No 279
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.30 E-value=2.7e-07 Score=98.81 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHccCCCeEeecCCCC----------CCCHHHHHHHHHHHc-------cCCCeEEEEecCHHHHH
Q 008771 262 SGWQMRMSLGKILLQDPDLLLLDEPTN----------HLDLDTIEWLEGYLG-------KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 262 GGqrqRv~LAraL~~~p~lLlLDEPt~----------~LD~~~~~~l~~~l~-------~~g~tvIiisHd~~~l~ 320 (554)
|++++|..+++|....|.+|++||+.+ +.|......+.++|. ..+..||.+||+++.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 678889999999999999999999943 566554444444432 24678899999986654
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.29 E-value=1.6e-07 Score=87.77 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=25.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999983
No 281
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.29 E-value=1.3e-07 Score=89.37 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=24.0
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+.+|++++|+||||||||||+++|+|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35799999999999999999999999875
No 282
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.29 E-value=7.2e-08 Score=96.91 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=41.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL 482 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G-~i~ 482 (554)
..|+++++.|.+|++++|+|+||||||||++.|+|...|.+| .|.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 468999999999999999999999999999999999998877 553
No 283
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.28 E-value=3.3e-07 Score=86.42 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.1
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce
Q 008771 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (554)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (554)
++|.+|++++|+|+||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 284
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.28 E-value=2.8e-08 Score=94.08 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=42.8
Q ss_pred eeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCcee
Q 008771 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNV 488 (554)
Q Consensus 429 ~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i--~~~~~~~ 488 (554)
|++..+++....+.+++...+|++|+|+|+||||||||+++|++.+. ..|.+ ++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 45555555445566777789999999999999999999999999887 66776 6665443
No 285
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.27 E-value=7.9e-07 Score=92.18 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=40.4
Q ss_pred HHHHhhhcCCCcc---ccCCCCCCCChhHHHHHHHH----HHH-ccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 239 VSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLG----KIL-LQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 239 ~~~~l~~lgl~~~---~~~~~~~~LSGGqrqRv~LA----raL-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
+.+++..+++... ....++..+|+|+++++.++ +.+ ..+|++ +|+|++|..+.+.|.+.+.
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence 4556666654321 11233566888888888877 666 444454 8999999988888777654
No 286
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.24 E-value=1.2e-07 Score=93.34 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=34.5
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHH---CCCCCCceeEE
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVI 155 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~---G~~~p~~G~I~ 155 (554)
.++++.+ .+|++++|+|+|||||||++++|+ |+..|++|.|+
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 3455544 789999999999999999999999 99999999987
No 287
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.23 E-value=5.5e-07 Score=84.91 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.9
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
++|.+|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999999977655
No 288
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.23 E-value=2.5e-07 Score=86.45 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999988
No 289
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.23 E-value=5.2e-06 Score=85.79 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.6
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHC--CCCCCceeEE
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVI 155 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p~~G~I~ 155 (554)
..+|++++++++ .++|||++|||||||++.|+| ++++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 357899999997 999999999999999999999 5677777664
No 290
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.20 E-value=1.3e-07 Score=98.42 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=45.2
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCcee------eEEEEecc
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNV------LPNYFEQN 496 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~-~G~i~~~~~~~------~~~y~~Q~ 496 (554)
+|++++ +.+|+.++|+||||||||||+++|+|+++|. +|.|.+.+.++ ..+|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee
Confidence 566654 7899999999999999999999999999997 89986554433 23578883
No 291
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.16 E-value=1.6e-06 Score=88.66 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=41.0
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH-HHccC-CCeEEEEec
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGKQ-DVPMVIISH 314 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~-g~tvIiisH 314 (554)
.||.++.+|+..|...+.+++++|.|+|... +..+..... +.+++ +..+|||.|
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999999999998654 444433333 33455 678888764
No 292
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.15 E-value=4.6e-06 Score=89.09 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 008771 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 263 GqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l 319 (554)
.+.+....+...+.+++++|+......-......++.+++++.++.+|++-+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777888888889998888776654333445678888888899999998877654
No 293
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.15 E-value=1.4e-05 Score=96.38 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=27.3
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
+.+|+.+.|.|++|+|||||+..++......
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~ 759 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 759 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc
Confidence 8999999999999999999999997755433
No 294
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.15 E-value=1.5e-06 Score=100.06 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=47.8
Q ss_pred CceEEEeeeeEec-----CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHH--------hCCCCCCceE
Q 008771 422 RSVVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--------MGLEKPRGGE 480 (554)
Q Consensus 422 ~~~l~~~~l~~~y-----~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L--------~G~~~p~~G~ 480 (554)
...+.+++....+ ++..++++++|++.+|++++|+||||||||||||+| .|...|..+.
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 4457777766544 234688999999999999999999999999999999 8888776553
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.14 E-value=7.3e-07 Score=84.18 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.0
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 443 vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
..+...+|++++|+|+||||||||+++|+|.+ |.+.+++.++
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 34566789999999999999999999999976 7788876544
No 296
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.14 E-value=2.4e-07 Score=91.03 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=33.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEE
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL 482 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~---G~~~p~~G~i~ 482 (554)
.+|++|+|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 789999999999999999999999 99999999887
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=1e-06 Score=83.12 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=24.8
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999765
No 298
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.12 E-value=7e-08 Score=100.34 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=38.1
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~ 483 (554)
.+++++++.+.+|++++|+||||||||||+++|+|. .+|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 478899999999999999999999999999999985 3566655
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.10 E-value=3.8e-07 Score=94.20 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=47.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCceee------EEEEecccccCCCCCCCHHHHHHhh
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVL------PNYFEQNQAEALDLDKTVLETVAEA 514 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~-~G~i~~~~~~~~------~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (554)
.+.+|+.++|+||||||||||+++|+|+++|. +|.|...+.++. .+++.|.+. .....+..+.|+.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~--~~~~~~~~~~La~a 192 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREV--HRDTLGFSEALRSA 192 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB--TTTBSCHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeee--ccccCCHHHHHHHH
Confidence 67889999999999999999999999999987 566655433331 235666532 11235666666544
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.10 E-value=8.7e-07 Score=82.25 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEE
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIK 156 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~ 156 (554)
+|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998864 4565543
No 301
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.09 E-value=1.8e-06 Score=89.00 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCCeEeecCCCCCCC---HHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 008771 277 DPDLLLLDEPTNHLD---LDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD---~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~ 321 (554)
.|.+|++||+....+ ......|.+.+ ...+.++|++||+..+...
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 388999999988763 44555566666 3457899999998865443
No 302
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.08 E-value=6.9e-06 Score=84.36 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.6
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
-|++|+++.|.|++|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988875
No 303
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.06 E-value=7e-07 Score=90.90 Aligned_cols=46 Identities=30% Similarity=0.294 Sum_probs=41.5
Q ss_pred EEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 113 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
+++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4788999999999999999999999999999999999889988643
No 304
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.06 E-value=1e-06 Score=85.99 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=47.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCcee------eEEEEecccccCCCCCCCHHHHHHh
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVLLGEHNV------LPNYFEQNQAEALDLDKTVLETVAE 513 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~---G~~~p~~G~i~~~~~~~------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (554)
++++++|+||||||||||+++|+ |+..|+.|.|.+.+.+. .+.++.|+. .+.++.++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 47999999999999999999999 99999999887654211 112334542 35567788888764
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.06 E-value=1.2e-06 Score=81.76 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
|++++|+||||||||||+++|++ |.+|.+.+++.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccc
Confidence 68999999999999999999997 667888887644
No 306
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.04 E-value=2.4e-06 Score=97.02 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=40.7
Q ss_pred eEEEeeeeEec-----CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 424 VVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 424 ~l~~~~l~~~y-----~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+.+++..-.. ++..++++++|+ .+|++++|+||||||||||||+|+|+.
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46666654322 345689999999 999999999999999999999999864
No 307
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.04 E-value=5.2e-07 Score=86.42 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=38.9
Q ss_pred cceeceEE-EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008771 438 LLFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (554)
Q Consensus 438 ~~l~~vs~-~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~ 483 (554)
..|+++.+ .|.+|++++|+||||||||||++.|++...+.+|.+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~ 56 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY 56 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35677766 79999999999999999999999999988777666644
No 308
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.03 E-value=1.4e-06 Score=80.80 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=28.8
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEE
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEV 481 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p-~~G~i 481 (554)
.+|++++|+||||||||||+++|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998864 44444
No 309
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.02 E-value=1.1e-07 Score=93.26 Aligned_cols=57 Identities=28% Similarity=0.374 Sum_probs=47.5
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
.+++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 35567777776667899999999999 99999999999999999999875 66666553
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=2.1e-06 Score=80.83 Aligned_cols=37 Identities=22% Similarity=0.104 Sum_probs=24.7
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
..++++||++.+|.+|+|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999755
No 311
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.00 E-value=1.4e-05 Score=81.35 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
-|++|+++.|.|++|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999988764
No 312
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.99 E-value=1.6e-06 Score=96.90 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=36.3
Q ss_pred HHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 008771 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 271 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l 319 (554)
..+-..+.-++++| |+++++..+..++.. +...+.++|++.|.++..
T Consensus 93 ~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 93 GALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGGC
T ss_pred HHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCchh
Confidence 33445688899999 999999998866544 445688999999998754
No 313
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.99 E-value=1.3e-07 Score=96.04 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=46.9
Q ss_pred eEEEEeCCeeeEEceeEEEECCC------EEEEECCCCccHHHHHHHHHCCCC--CCceeEEEcCCCceEEEEeccccc
Q 008771 102 NISKSYKGVTVLKDVTWEVKKGE------KVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 102 ~ls~~y~~~~~l~~isl~i~~Ge------~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
.+++.|++...|++++..|..+. ++||+|+||||||||+++|++++. |+.|. +++++++...
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~---------v~~i~~D~f~ 134 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC---------EEEEEGGGGB
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe---------EEEEeecccc
Confidence 34445666677777777777776 999999999999999999999987 44443 5566766543
No 314
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.98 E-value=2.2e-07 Score=91.02 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=47.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
.+++++.+.|....++++++|++.+| ++|+||||||||||+++|++... .|.+.+.+.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 34566666666556889999999999 99999999999999999999875 567776654
No 315
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.96 E-value=2.6e-07 Score=91.98 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=47.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
.+++++.+.|....++++++|.+.+| ++|+||||||||||+++|++... .|.+.+.+.
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 34566666676667889999999999 99999999999999999999876 677777654
No 316
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.95 E-value=4.4e-06 Score=87.90 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=32.6
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 440 l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
-++++|+++.|+.|+|+|+||||||||+++|+|.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999999999999999998
No 317
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.94 E-value=7e-07 Score=82.10 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=29.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~ 159 (554)
.+|++++|+|+||||||||+++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCc
Confidence 468999999999999999999999865 66666653
No 318
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.93 E-value=2.9e-06 Score=81.95 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=32.8
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~ 159 (554)
+.+.++|++++|+|+||||||||+++|+|. .|+|.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 335578999999999999999999999997 677776543
No 319
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.91 E-value=7.9e-07 Score=82.27 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.4
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
+|.+.+|+.++|+||||||||||+++|++.+.|..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 466778999999999999999999999999887666
No 320
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.91 E-value=4.6e-06 Score=88.38 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=37.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~ 478 (554)
|+++|+ ..|++. . ++++..|++++|+||||||||||+++|+++..|.+
T Consensus 7 l~~~~~-~~~~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 7 LELSNF-KSYRGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEESC-SSCCSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEeCE-EEECCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 567777 567542 1 35567899999999999999999999999888765
No 321
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.90 E-value=8.3e-06 Score=78.64 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=34.3
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC--CCCC-----CceEEEECCc
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMG--LEKP-----RGGEVLLGEH 486 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G--~~~p-----~~G~i~~~~~ 486 (554)
-|.+|++++|+||||||||||++.|++ +.+| ..|.+++++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 488999999999999999999999999 5655 4566766543
No 322
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.90 E-value=1.7e-06 Score=81.72 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=33.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
..+|++++|+|+||||||||+++|++.+.+..|.|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 567899999999999999999999999988778776543
No 323
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.90 E-value=3.1e-06 Score=81.76 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
...+|++|+|.|+||||||||+++|+|. .|.|.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 4578999999999999999999999998 566766544
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.89 E-value=2e-06 Score=81.31 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=33.7
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (554)
..+|++++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 46789999999999999999999999998888877654
No 325
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.89 E-value=1.1e-05 Score=75.22 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=32.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCceee
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKP-----------RGGEVLLGEHNVL 489 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p-----------~~G~i~~~~~~~~ 489 (554)
+++|+|+||||||||++.|+|...+ ..|.|.++|.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 6899999999999999999998775 5788888876554
No 326
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.89 E-value=5e-07 Score=91.82 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=37.1
Q ss_pred eEecCCccceeceEEEEecCC------EEEEECCCCCcHHHHHHHHhCCCC--CCceEE
Q 008771 431 EFGYEDRLLFNRANLTIERGE------KTAIIGPNGCGKSTLLKLIMGLEK--PRGGEV 481 (554)
Q Consensus 431 ~~~y~~~~~l~~vs~~i~~Ge------~iaIvG~NGsGKSTLlk~L~G~~~--p~~G~i 481 (554)
++.|++...+.+++..+..+. +|||+||||||||||+++|.+++. |.+|.+
T Consensus 67 ~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 67 SFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 334444445555666666655 899999999999999999999987 445543
No 327
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.89 E-value=2.7e-06 Score=86.50 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=33.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEECCcee
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLE--------KPRGGEVLLGEHNV 488 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~--------~p~~G~i~~~~~~~ 488 (554)
++++|+|+||||||||+++|+|.. .|+.|+|.++|..+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 589999999999999999999997 78999998876543
No 328
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=5.8e-06 Score=78.56 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
++|++++|+||||||||||+++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
No 329
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.87 E-value=9.7e-06 Score=82.25 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=40.3
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHH-HHHHHHccCCCe--EEEEecC
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVP--MVIISHD 315 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~-~l~~~l~~~g~t--vIiisHd 315 (554)
||.++.+|+..|...+.++++++.|+|... ..... .+..+.++.+.. +|||.|=
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 899999999999999999999999999744 44333 333344455667 8888763
No 330
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.84 E-value=3.7e-06 Score=75.73 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=31.8
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECCc
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEH 486 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G--~i~~~~~ 486 (554)
+|+.++|+||||||||||+++|++...+ +| .+++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHH
Confidence 8999999999999999999999998877 46 5665543
No 331
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.83 E-value=9.1e-06 Score=85.61 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=44.9
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (554)
.+++++.|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 346677776544 678888 899999999999999999999999999887777654
No 332
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.83 E-value=9.2e-06 Score=83.84 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=31.3
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
.+++++|++.+| +++|+||||||||||+++|++
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578899999999 999999999999999999997
No 333
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=8.6e-06 Score=77.33 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=27.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
.+|++++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.82 E-value=2.2e-06 Score=87.16 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=41.6
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
++++|++.+|++++|+|+||+||||++..|++.+.+..|.|.+.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56788889999999999999999999999999999988888775443
No 335
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.81 E-value=4e-05 Score=80.87 Aligned_cols=35 Identities=31% Similarity=0.158 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (554)
++.+++++|+|||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999988776555543
No 336
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.81 E-value=6.3e-06 Score=77.72 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.8
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999875
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.80 E-value=1e-05 Score=76.53 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=35.0
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
++++|.+++|+|++|||||||+++|++.++ .+.+++|+..++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------~~~~i~~D~~~~ 58 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------NCSVISQDDFFK 58 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------TEEEEEGGGGBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------CcEEEeCCcccc
Confidence 467899999999999999999999999874 267788876554
No 338
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.77 E-value=6.8e-06 Score=75.38 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=30.3
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
.+|++++|+|+|||||||++++|++.+ |.+.+++..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999865 5666665443
No 339
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.77 E-value=4.9e-05 Score=73.45 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCcee
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~ 153 (554)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 57999999999999999999988776654
No 340
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.76 E-value=4.2e-06 Score=91.13 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCce-eEE-EcC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVI-KAK 158 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~I~-~~~ 158 (554)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5779999999999999999999999999999886 674 554
No 341
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.76 E-value=3.2e-06 Score=85.43 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=37.8
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 443 vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
++|...+|++++|+|+|||||||++..|++.+.+..|.|.+.+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 34556789999999999999999999999999988888876543
No 342
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.76 E-value=1e-05 Score=83.29 Aligned_cols=66 Identities=27% Similarity=0.375 Sum_probs=47.0
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCC--CCCc----eE-EEECCcee----eEEEEecccccCCCCCCCHHHHHH
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG----GE-VLLGEHNV----LPNYFEQNQAEALDLDKTVLETVA 512 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~--~p~~----G~-i~~~~~~~----~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (554)
.+.|++|++++|+||||||||||++.|++.. +|++ |. |++++... ..++++|+. .++++ ++.+|+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~--~~~~~-~v~~ni~ 201 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR--GLDPD-EVLKHIY 201 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT--TCCHH-HHGGGEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc--CCCHH-HHhhCEE
Confidence 5789999999999999999999999999988 6666 56 77776442 123455543 23322 5555543
No 343
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.75 E-value=3.7e-06 Score=91.56 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=37.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE-ECCcee
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL-LGEHNV 488 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G-~i~-~~~~~~ 488 (554)
.+.+|++++|+|+||||||||+++|+|.+.|.+| .+. +++.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 564 776443
No 344
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.74 E-value=8.7e-06 Score=76.75 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=26.7
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+...+|+.++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4455899999999999999999999998875
No 345
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.73 E-value=2.6e-07 Score=95.06 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=48.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (554)
++.+++.+.|+...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|+|.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34455555666667889999999999999999999999999999999998877666543
No 346
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.72 E-value=1.7e-05 Score=82.75 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=35.9
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMG------------LEKPRGGEVLLGE 485 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G------------~~~p~~G~i~~~~ 485 (554)
++.+|++++|+|+||+|||||+++|+| ...|..|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 456899999999999999999999999 5678999998876
No 347
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.71 E-value=1.2e-05 Score=73.49 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.4
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
..|++|+|+|+||||||||+++|++.+.+
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999997654
No 348
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.69 E-value=2.8e-05 Score=72.72 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=30.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-----CC------ceEEEECCceee
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK-----PR------GGEVLLGEHNVL 489 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~-----p~------~G~i~~~~~~~~ 489 (554)
+++|+|+||||||||++.|+|... |+ .|.|.++|..+.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 55 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 55 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE
Confidence 689999999999999999999753 32 567888776543
No 349
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.67 E-value=3.7e-06 Score=84.80 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHHHc--cCCCeEeecCCCCCCCHHH-HHHHHHH---H-ccCCC--eEEEEecCHHHHHhhcceEE
Q 008771 260 FSSGWQMRMSLGKILL--QDPDLLLLDEPTNHLDLDT-IEWLEGY---L-GKQDV--PMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 260 LSGGqrqRv~LAraL~--~~p~lLlLDEPt~~LD~~~-~~~l~~~---l-~~~g~--tvIiisHd~~~l~~~~d~i~ 327 (554)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+. + ...+. .+.+++|+-.-+..++|.|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566665 78999998 8888754 3333332 2 33443 56666777777777777665
No 350
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.63 E-value=1.7e-05 Score=72.39 Aligned_cols=28 Identities=39% Similarity=0.372 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
.|++++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999997753
No 351
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.62 E-value=2.5e-05 Score=80.87 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=29.2
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
.++++++++..| .++|+||||||||||+.+|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367789999999 88999999999999999998
No 352
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.61 E-value=6.7e-06 Score=84.72 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=47.0
Q ss_pred ccEEEEeEEEEeCC-eeeEE--------------ceeEEEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 96 SGVKLENISKSYKG-VTVLK--------------DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 96 ~~i~~~~ls~~y~~-~~~l~--------------~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+.|+|+++.|+. +..|+ |+++.|.+|++++|+|++|+|||||++.|++.+
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34889999999975 56888 999999999999999999999999999999865
No 353
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.58 E-value=0.00019 Score=71.54 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHHccCCCeEeecCCCCCCCH----------HHHHHHHHHHcc-------CCCeEEEEecCHH
Q 008771 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----------DTIEWLEGYLGK-------QDVPMVIISHDRA 317 (554)
Q Consensus 261 SGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~----------~~~~~l~~~l~~-------~g~tvIiisHd~~ 317 (554)
+++++.+..++.+...+|.+|++||+.+-++. .....|...+.. .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888888888899999999999877653 222334333322 2345777788753
No 354
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.58 E-value=0.00068 Score=61.08 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.0
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999654
No 355
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.57 E-value=1.1e-05 Score=83.24 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=45.2
Q ss_pred eEEEeeeeEecCC-cccee--------------ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 424 VVTIKNLEFGYED-RLLFN--------------RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 424 ~l~~~~l~~~y~~-~~~l~--------------~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
-+.++|+++.|+. +..++ |+.+.|.+|++++|+|++|||||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3678999999975 45777 899999999999999999999999999998864
No 356
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.57 E-value=0.00032 Score=72.25 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.1
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998877543
No 357
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.56 E-value=1.8e-05 Score=87.53 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=47.9
Q ss_pred eeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEECC
Q 008771 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-GEVLLGE 485 (554)
Q Consensus 429 ~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~-G~i~~~~ 485 (554)
+++--|+...+++.+++.+..|+.++|+||||||||||+++|+++..+.. |.+.+.+
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 34444566678899999999999999999999999999999999999887 6665543
No 358
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.55 E-value=1.2e-06 Score=90.13 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=41.3
Q ss_pred ecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008771 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (554)
Q Consensus 433 ~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~ 483 (554)
.|+...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|.+.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 39 QALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 343345677888888999999999999999999999999988766665543
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.52 E-value=3.9e-05 Score=68.96 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=23.5
Q ss_pred eeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 116 isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
..+.+.+| +.+|+|||||||||++.+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 44555555 99999999999999999987
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.48 E-value=1.3e-05 Score=76.61 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC---CCCceeEEE
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIK 156 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~---~p~~G~I~~ 156 (554)
+.+++|+|++||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 556666554
No 361
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.48 E-value=5.6e-05 Score=67.86 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=23.8
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3344555444 89999999999999999986
No 362
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.48 E-value=4.5e-05 Score=72.23 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=28.4
Q ss_pred eeceEE-EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 440 FNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 440 l~~vs~-~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
|+.+.. -|++|++++|+|+||||||||++.|++
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444433 588999999999999999999999999
No 363
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.47 E-value=1.5e-05 Score=76.27 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=29.5
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEE
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLL 483 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~---~p~~G~i~~ 483 (554)
.+.+|+|+|++||||||++++|++.+ .++.|.+..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 35789999999999999999998765 667777655
No 364
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.46 E-value=2.6e-05 Score=78.33 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
.+|++++|+|+|||||||++..|++.+.+.+|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999988777
No 365
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.44 E-value=2.5e-06 Score=93.14 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=48.8
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
-++++.+.|....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.+
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3456666666566788888888 8999999999999999999999999988777776543
No 366
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.43 E-value=4.4e-05 Score=72.03 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=27.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
++.+|.+|+|+|++|||||||+++|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999999999864
No 367
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.43 E-value=8.8e-05 Score=77.60 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=32.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHH--hCCCCCCce-----EEEECCc
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRGG-----EVLLGEH 486 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L--~G~~~p~~G-----~i~~~~~ 486 (554)
-|.+|++++|+||||||||||++.| .++.++..| .+++++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 5889999999999999999999944 577766444 5555543
No 368
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.42 E-value=0.00027 Score=74.95 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=30.8
Q ss_pred cCCCeEeecCCCCCCCH-HHHHHHHHHH---ccCCCeEEEEecCH
Q 008771 276 QDPDLLLLDEPTNHLDL-DTIEWLEGYL---GKQDVPMVIISHDR 316 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~-~~~~~l~~~l---~~~g~tvIiisHd~ 316 (554)
.+|++|++||+..-.+. ...+.|...+ .+.+..+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4555555554 45688999999983
No 369
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.41 E-value=4.9e-05 Score=73.37 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=30.8
Q ss_pred eEEceeEEEE---CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE
Q 008771 112 VLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (554)
Q Consensus 112 ~l~~isl~i~---~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~ 155 (554)
-|.++||++. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 3666677766 8999999999999999999999998877 55554
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.40 E-value=3.5e-05 Score=70.93 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=26.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCce
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (554)
.+|++++|+|++||||||++++|++.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 46899999999999999999999998755 45
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.39 E-value=3.3e-05 Score=71.08 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=29.4
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGE 485 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G--~i~~~~ 485 (554)
.+|++|+|+|++||||||++++|++.+.+ .| .+.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence 46899999999999999999999997755 45 444443
No 372
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.36 E-value=9.1e-05 Score=71.47 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.6
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
..|+.++|+|++||||||++.++..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 3689999999999999998887653
No 373
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.36 E-value=1.2e-05 Score=83.17 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=38.8
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
....+.+.|++..|+.+.++++++|+| +|||++|+|||||++.|.|...+..|.+
T Consensus 14 ~~~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 14 TPGYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp -------CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CCceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 345688999999998888899999987 9999999999999999998766555543
No 374
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.36 E-value=7.5e-06 Score=89.37 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=46.4
Q ss_pred EeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 427 ~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
++++...|....++.++++++ +|+.++|+||||||||||+++|++...+..|.|.+++
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 344555554444667777777 8999999999999999999999999988888887655
No 375
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.34 E-value=2.4e-05 Score=82.34 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=43.0
Q ss_pred eeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 429 ~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
+++..|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+..+.|.+.+.+
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 3445555432 567777 899999999999999999999999999988877665433
No 376
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.32 E-value=5.2e-05 Score=77.97 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (554)
++.+++|+|++|||||||++.|+|.+.+..|+|.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~ 108 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence 567999999999999999999999988888877654
No 377
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.28 E-value=8.2e-05 Score=71.76 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=30.3
Q ss_pred eeceEEEEe---cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008771 440 FNRANLTIE---RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (554)
Q Consensus 440 l~~vs~~i~---~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~ 482 (554)
+.++||.+. +|.+|+|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 344555554 8999999999999999999999998887 55553
No 378
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.27 E-value=0.00018 Score=72.04 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
..+.|+||+|+|||||+++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887666644
No 379
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.24 E-value=8.2e-05 Score=80.62 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.5
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+++++|++.+| +.+|+|+||||||||+.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999 9999999999999999999544
No 380
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.21 E-value=0.0012 Score=66.60 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.6
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
-|++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988775
No 381
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.20 E-value=2.8e-05 Score=83.64 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=45.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
.+++++...|....+++++++.+.+| +.|+||||||||||+++|++... .+.+.+.+.+
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~ 99 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 99 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhH
Confidence 34455554555556788999999999 99999999999999999999875 4567666543
No 382
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.19 E-value=0.00081 Score=71.31 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=78.5
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (554)
+-|+.+.--+++|+.+.|.|++|+|||||+.-|+.......| ..+.|+.=+ ++..+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--------~~vl~~slE------~~~~~l~~------- 246 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--------VGVGIYSLE------MPAAQLTL------- 246 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCEEEEESS------SCHHHHHH-------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--------CeEEEEECC------CCHHHHHH-------
Confidence 346665545889999999999999999999888765432222 234555422 22221110
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 270 (554)
++.. ...|++..... -..||..+.+|+.-
T Consensus 247 -----------------------------------------------R~~~--~~~~i~~~~l~--~g~l~~~~~~~~~~ 275 (444)
T 2q6t_A 247 -----------------------------------------------RMMC--SEARIDMNRVR--LGQLTDRDFSRLVD 275 (444)
T ss_dssp -----------------------------------------------HHHH--HHTTCCTTTCC--GGGCCHHHHHHHHH
T ss_pred -----------------------------------------------HHHH--HHcCCCHHHHh--CCCCCHHHHHHHHH
Confidence 0000 11233211111 13689999999998
Q ss_pred HHHHccCCCeEeecCCCCCCCHHHH-HHHHHHHccCCCeEEEEec
Q 008771 271 GKILLQDPDLLLLDEPTNHLDLDTI-EWLEGYLGKQDVPMVIISH 314 (554)
Q Consensus 271 AraL~~~p~lLlLDEPt~~LD~~~~-~~l~~~l~~~g~tvIiisH 314 (554)
|...+.+.++++.|+|... .... ..+..+.++.+..+|||.+
T Consensus 276 a~~~l~~~~l~i~d~~~~s--~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 276 VASRLSEAPIYIDDTPDLT--LMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTSCEEEECCTTCB--HHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHhcCCEEEECCCCCC--HHHHHHHHHHHHHHcCCCEEEEcC
Confidence 8888888899999987544 4333 2334444456777887764
No 383
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.17 E-value=0.00016 Score=68.34 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=23.9
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
+.++.+.+| +.+|+|+|||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345556564 99999999999999999886
No 384
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.17 E-value=0.00022 Score=71.61 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.7
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 34678889999999999999999999866
No 385
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.16 E-value=9e-05 Score=76.21 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=30.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~ 484 (554)
.+.+|+|+|++|||||||++.|+|.+.+.+|.|.+-
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~ 108 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence 467899999999999999999999887777766544
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.16 E-value=5.4e-05 Score=71.78 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=32.9
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCce--eEEEc
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKA 157 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G--~I~~~ 157 (554)
.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3567899999999999999999999998877777 55544
No 387
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.15 E-value=0.00072 Score=76.46 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=24.5
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
+.+.--+.+.||.|||||.|.++|++....
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 334445899999999999999999997653
No 388
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.13 E-value=1.6e-05 Score=80.05 Aligned_cols=54 Identities=26% Similarity=0.196 Sum_probs=43.0
Q ss_pred EEeEEEEeCCeeeEEc-eeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE
Q 008771 100 LENISKSYKGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~-isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (554)
.+++.+.|++.. ++ ++|+++ |.+++++|+||+||||++..|++.+.+..|+|.+
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 456666676543 56 788876 9999999999999999999999999877666654
No 389
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.13 E-value=0.00025 Score=65.68 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=20.9
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHC
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
.+++++++..++. .++|+|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4788999998887 889999999999999999997
No 390
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00021 Score=67.12 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.12 E-value=7e-05 Score=70.97 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=35.0
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECC
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGE 485 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G--~i~~~~ 485 (554)
+.+.+|..|+|+|++||||||+.+.|++.+.|..| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 34567999999999999999999999999887777 676654
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.11 E-value=6.8e-05 Score=70.19 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=31.3
Q ss_pred EEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 104 SKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 104 s~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|++. .+++++||..++. .++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3456553 6889999988877 6899999999999999999873
No 393
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.08 E-value=2.8e-05 Score=78.16 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=40.7
Q ss_pred eeeEecCCccceec-eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 429 NLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 429 ~l~~~y~~~~~l~~-vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
++...|++.. .+ ++|+++ |.+++++|+||+||||++..|++.+.+..+.|.+.+
T Consensus 79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444454321 34 667766 999999999999999999999999988777766543
No 394
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.07 E-value=0.0002 Score=67.18 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 395
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.07 E-value=0.00022 Score=66.04 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=26.6
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999865
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.05 E-value=0.0003 Score=66.45 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=23.0
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
+.++++.+ ...+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455444 389999999999999999884
No 397
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.00017 Score=73.66 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCc
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEH 486 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G-~~~p~~G~i~~~~~ 486 (554)
..+.|+||||+|||||+++|+| ++.|..|.+.+++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 3489999999999999999999 78999998877654
No 398
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.03 E-value=8.6e-05 Score=79.84 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=43.3
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
+++++...|.+..+++++++.+++| +.|+||||+|||||+++|++... .+.|.+++
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 3444444454555788899999998 99999999999999999999874 56666654
No 399
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.00 E-value=0.00025 Score=66.44 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 400
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.00 E-value=0.00011 Score=76.01 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=37.2
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
.+.+.+++..|+.+.+.++++|.| +|+|++|+|||||++.|+|......+
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 477888888887777888888877 99999999999999999987655443
No 401
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.00 E-value=0.00035 Score=71.39 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=23.5
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
.+..++..+| +.+|+||||||||||+.+|+
T Consensus 15 ~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4445555444 88999999999999999873
No 402
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.00 E-value=0.00034 Score=63.77 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++|.+++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999875
No 403
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.99 E-value=0.00031 Score=73.05 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=32.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC-----------CCCCceeEEEcC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ-----------EEPDSGNVIKAK 158 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~-----------~~p~~G~I~~~~ 158 (554)
.+..|..++|||+||+|||||++.|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3457889999999999999999999998 567788887654
No 404
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.99 E-value=0.00055 Score=72.49 Aligned_cols=37 Identities=38% Similarity=0.601 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCcee
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK------------PRGGEVLLGEHNV 488 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~------------p~~G~i~~~~~~~ 488 (554)
+++|+|+||||||||++.|+|... +.+|.+.++|..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999864 5678888877543
No 405
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.98 E-value=0.00018 Score=66.47 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=29.7
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
..+|.+++|+|++||||||+++.|+..+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999999999999999887655554
No 406
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.97 E-value=0.00019 Score=66.40 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
...+|.+|.|+|++||||||+.+.|++.+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999999887665554
No 407
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.97 E-value=0.00031 Score=67.54 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=29.6
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHH-hCCCCCCceEEEEC
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLI-MGLEKPRGGEVLLG 484 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L-~G~~~p~~G~i~~~ 484 (554)
..-+.+|+.++|+|+||||||||+..+ .+..+...+.+++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 446899999999999999999996555 44444433444443
No 408
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.97 E-value=0.00031 Score=64.95 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.4
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
++|+...+|.+|+|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999875
No 409
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.96 E-value=0.00057 Score=72.39 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=28.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC------------CCceeEEEcCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE------------PDSGNVIKAKS 159 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~------------p~~G~I~~~~~ 159 (554)
.++|||+||+|||||++.|+|... |.+|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 899999999999999999999864 55677776653
No 410
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.96 E-value=0.0002 Score=66.86 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=36.7
Q ss_pred ecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECC
Q 008771 433 GYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGE 485 (554)
Q Consensus 433 ~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~--------~~p~~G~i~~~~ 485 (554)
.|++ ..++++++|..+.+ +|+|+|++|+|||||++.+.+- ..+..+.+.+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp -----CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 4444 24778888887776 7899999999999999999973 223456666665
No 411
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.001 Score=68.16 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566899999999999999999997653
No 412
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.94 E-value=0.00041 Score=63.21 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=23.6
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+|.+|+|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999865
No 413
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.92 E-value=0.00031 Score=72.35 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=31.6
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEE
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVL 482 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G--~~~p~~G~i~ 482 (554)
.+++++++++. .|+|+|++|||||||++.|+| .+++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 36778888887 999999999999999999999 5566666553
No 414
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.92 E-value=0.00071 Score=62.61 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=21.1
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
+++++++..+.. +|+|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 567888888777 899999999999999999997
No 415
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.85 E-value=0.0061 Score=62.80 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
-+++|+++.|.|+.|+|||||+..++-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3689999999999999999999777643
No 416
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.85 E-value=0.00055 Score=71.20 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=32.8
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE 485 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~-----------~~p~~G~i~~~~ 485 (554)
.+..|.+++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4467889999999999999999999998 667788887654
No 417
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.84 E-value=0.00082 Score=69.38 Aligned_cols=39 Identities=21% Similarity=0.471 Sum_probs=30.4
Q ss_pred CCE-EEEECCCCCcHHHHHHHHhCCCC-----------CCceEEEECCcee
Q 008771 450 GEK-TAIIGPNGCGKSTLLKLIMGLEK-----------PRGGEVLLGEHNV 488 (554)
Q Consensus 450 Ge~-iaIvG~NGsGKSTLlk~L~G~~~-----------p~~G~i~~~~~~~ 488 (554)
|-. |+|+|++|||||||++.|+|... |..|.+.++|..+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 444 99999999999999999999876 5678888877543
No 418
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.84 E-value=0.0005 Score=64.65 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.1
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
...+|.+++|+|++|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346799999999999999999999998764
No 419
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.82 E-value=0.00058 Score=62.73 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCc
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~ 151 (554)
+++|+|++|+|||||++.++|...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 689999999999999999999754433
No 420
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.82 E-value=0.0017 Score=63.04 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
.++|||.+|+|||||++.|+|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998754
No 421
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.003 Score=60.46 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecC----------HHHHHhhcceEEEee
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD----------RAFLDQLCTKIVETE 330 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd----------~~~l~~~~d~i~~l~ 330 (554)
+|+++++||-- .|+....+.+.. |.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 58999999996 488776555544 44459999999993 345556899999875
No 422
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.00065 Score=62.19 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 423
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.77 E-value=0.0006 Score=64.06 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.+.+|..|+|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999987664
No 424
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=6.8e-05 Score=76.59 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=41.2
Q ss_pred EeCCeeeEEceeEEEECCCE--EEEECCCCccHHHHHHHHHCCCCCCcee
Q 008771 106 SYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (554)
Q Consensus 106 ~y~~~~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~p~~G~ 153 (554)
.|+...+++.++..|..|++ +.|.||+|+||||+++++++.+.+..+.
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 45666788899999999998 9999999999999999999987665543
No 425
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.74 E-value=0.00037 Score=71.62 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
-|.+|+++.|.||+|||||||+..++....+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 478999999999999999999999998877766654
No 426
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.73 E-value=0.0008 Score=61.77 Aligned_cols=24 Identities=46% Similarity=0.722 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|+|+|++|||||||++.++|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999643
No 427
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.0011 Score=60.58 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 428
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.70 E-value=0.0018 Score=65.40 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
+..+.|.||+|+|||||++.|++...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457899999999999999999987643
No 429
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.68 E-value=0.0007 Score=62.24 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.2
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
.+|.+|+|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
No 430
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.67 E-value=0.0017 Score=63.94 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+..+.|.||.|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999999865
No 431
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.66 E-value=0.0011 Score=59.54 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 432
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.65 E-value=0.0051 Score=57.92 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=32.3
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~ 317 (554)
.+|.+|++||.-. +|......|...+.+ .+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4578999999765 788888888888865 3567888888764
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.61 E-value=0.00093 Score=64.34 Aligned_cols=27 Identities=37% Similarity=0.446 Sum_probs=23.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
+-.+|.+|+|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999999986
No 434
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=9.5e-05 Score=75.47 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=37.1
Q ss_pred cCCccceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCCCCCc
Q 008771 434 YEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRG 478 (554)
Q Consensus 434 y~~~~~l~~vs~~i~~Ge~--iaIvG~NGsGKSTLlk~L~G~~~p~~ 478 (554)
|+...+++.++..|..|+. +.+.||+|+||||+++++++.+.+..
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4455577778888889988 99999999999999999999765543
No 435
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.60 E-value=0.00019 Score=73.47 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=33.3
Q ss_pred eeEEceeEEEECCCE--EEEECCCCccHHHHHHHHHCCCC
Q 008771 111 TVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367778888889998 99999999999999999998653
No 436
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.59 E-value=0.00088 Score=61.53 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
No 437
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.57 E-value=0.0014 Score=67.76 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=25.5
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 440 l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
+.++.++..+| ..+|+|+|||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45566666554 89999999999999999985
No 438
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.56 E-value=0.00026 Score=72.36 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=31.7
Q ss_pred ceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCC
Q 008771 439 LFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~--iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+++.+++.+.+|++ |+|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 56777788889998 9999999999999999998854
No 439
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.00086 Score=62.74 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 440
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.56 E-value=0.0045 Score=62.22 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHH--c--cCCCeEeecCCCCCCC-H---------------HH------HHHHHHHHccCCCeEEEEecC
Q 008771 262 SGWQMRMSLGKIL--L--QDPDLLLLDEPTNHLD-L---------------DT------IEWLEGYLGKQDVPMVIISHD 315 (554)
Q Consensus 262 GGqrqRv~LAraL--~--~~p~lLlLDEPt~~LD-~---------------~~------~~~l~~~l~~~g~tvIiisHd 315 (554)
-++++.+.++.++ + .+|+++++|=-++-.- . .. ...|..++++.+.++|+|-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566656777766 3 4799999998777642 0 11 111233456789999999998
Q ss_pred HH
Q 008771 316 RA 317 (554)
Q Consensus 316 ~~ 317 (554)
+.
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 76
No 441
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.55 E-value=0.00086 Score=61.76 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=27.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLG 484 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~p~---~G~i~~~ 484 (554)
-.+++|+|++|||||||++.|++.+++. -|.|..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 3589999999999999999999876543 3555554
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.55 E-value=0.0011 Score=63.94 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+|.+++|+|++||||||+.++|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999999999999743
No 443
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.00084 Score=62.79 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
..+|+|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 444
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.52 E-value=0.00076 Score=67.68 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
++.+|+|+|++|+|||||++.|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999974
No 445
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.00028 Score=71.75 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred eCCeeeEEceeEEEECC--CEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCCceEEEEecccccccCccHHHHHH
Q 008771 107 YKGVTVLKDVTWEVKKG--EKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 107 y~~~~~l~~isl~i~~G--e~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
+|...+++.+.-.+..| ..+.|.||+|+|||||++.|++.+. ++.+.+.+.
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~-------------------------- 93 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL-------------------------- 93 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE--------------------------
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE--------------------------
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChh
Q 008771 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (554)
.-.+.+..|-
T Consensus 94 ----------------------------------------------------------------------~~~~~~~~~~ 103 (353)
T 1sxj_D 94 ----------------------------------------------------------------------ELNASDERGI 103 (353)
T ss_dssp ----------------------------------------------------------------------EECSSSCCCH
T ss_pred ----------------------------------------------------------------------EEccccccch
Q ss_pred HHHHHHHHHHHcc----------------CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 008771 264 WQMRMSLGKILLQ----------------DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (554)
Q Consensus 264 qrqRv~LAraL~~----------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~ 317 (554)
..-+-.+...... ++.+|++|| ...|+......|.+.+.+ ....+|+++++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 104 SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
No 446
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.33 E-value=0.00074 Score=65.18 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.-+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999543
No 447
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.0011 Score=64.40 Aligned_cols=32 Identities=38% Similarity=0.618 Sum_probs=23.6
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.+++.+.+| +.|+||+|||||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 333444444 89999999999999999998764
No 448
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.32 E-value=0.027 Score=59.25 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999876653
No 449
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.31 E-value=0.001 Score=64.73 Aligned_cols=30 Identities=40% Similarity=0.564 Sum_probs=23.3
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
++.++.| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 41 GGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp --CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3334444 89999999999999999998763
No 450
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.29 E-value=0.0024 Score=61.34 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
+|+|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999998776554
No 451
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.28 E-value=0.0011 Score=61.12 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
.+++|+|++|||||||++.|.+.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999987654
No 452
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.27 E-value=0.0021 Score=57.99 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 453
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.26 E-value=0.0021 Score=57.91 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
No 454
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.23 E-value=0.0015 Score=63.61 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=29.5
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
..++.+|.|+|++||||||+.+.|+..+.. +.+.+++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~--~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQG--NIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTT--CCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCC--CcEEEecH
Confidence 345678999999999999999999987642 44555543
No 455
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.23 E-value=0.0016 Score=63.54 Aligned_cols=38 Identities=34% Similarity=0.276 Sum_probs=29.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
....+.++.|+|++||||||+.+.|+..+. .|.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 345677899999999999999999998764 23455543
No 456
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.21 E-value=0.029 Score=60.23 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
-+.+|+.+.|.|+.|+|||||+--++-.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4889999999999999999998766643
No 457
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.20 E-value=0.0027 Score=57.79 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
No 458
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.18 E-value=0.0035 Score=64.41 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.8
Q ss_pred CCEEEEECCCCccHHHHHHHHHCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
|-.++|||.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999983
No 459
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.15 E-value=0.003 Score=57.41 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
|..|.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987654
No 460
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.14 E-value=0.0014 Score=74.62 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=29.6
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
|.+.+|+.+.|+||+|||||||+++|++.+.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 467889999999999999999999999987653
No 461
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.13 E-value=0.0067 Score=55.59 Aligned_cols=28 Identities=39% Similarity=0.717 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHH-HCC----CCCCce
Q 008771 125 KVGLVGVNGAGKTTQLRII-AGQ----EEPDSG 152 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i-~G~----~~p~~G 152 (554)
+++|+|+.|+|||||++.+ .+. +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 5899999999999999655 444 456655
No 462
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.11 E-value=0.0018 Score=62.54 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
..-+|+|+||+||||||+.+.|+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999983
No 463
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.10 E-value=0.0082 Score=55.02 Aligned_cols=37 Identities=32% Similarity=0.595 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC-C----CCCCce----EEEECCcee
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG-L----EKPRGG----EVLLGEHNV 488 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G-~----~~p~~G----~i~~~~~~~ 488 (554)
+|+|+|+.|+|||||++.+++ . ..|+.| .+.+++..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 689999999999999976654 3 456656 455555443
No 464
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.09 E-value=0.0017 Score=66.56 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=27.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
-+.+|+++.|.|+||||||||+..++.......|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~ 90 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG 90 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999998888755443333
No 465
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.09 E-value=0.0021 Score=69.12 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=33.9
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEE
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLL 483 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G--~~~p~~G~i~~ 483 (554)
.+.+++.++.++.|+|.+||||||+++.|.. ++++..|.+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 4778999999999999999999999999875 44555455544
No 466
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.08 E-value=0.0016 Score=67.69 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=36.5
Q ss_pred CeeeEEceeEEEE---CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc
Q 008771 109 GVTVLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (554)
Q Consensus 109 ~~~~l~~isl~i~---~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (554)
+.+++-|+ |... .+..++|+|++|||||||++.|++...+..+.|.+-
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 44566555 3222 567899999999999999999998877777777654
No 467
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.07 E-value=0.0013 Score=73.49 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=29.2
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEE
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEV 481 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p--~~G~i 481 (554)
++.+.+|.+++|+|+||+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 467788999999999999999999999966544 34544
No 468
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.07 E-value=0.0033 Score=57.64 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 469
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.05 E-value=0.0026 Score=57.88 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 470
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.04 E-value=0.013 Score=71.04 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=27.0
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
|++|+.+.|.|++|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999999876543
No 471
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.04 E-value=0.0028 Score=59.97 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
.+-+|+|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 472
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.00 E-value=0.0028 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 473
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.00 E-value=0.039 Score=54.72 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+..+.|.||.|+|||||++.|+..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888765
No 474
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.98 E-value=0.0034 Score=56.34 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRII 143 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i 143 (554)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 475
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.96 E-value=0.004 Score=57.08 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
|-+|.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999997643
No 476
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.96 E-value=0.0036 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999755
No 477
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.96 E-value=0.02 Score=53.42 Aligned_cols=69 Identities=20% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHHHHHHHc--cCCCeEeecCCCCC--CCHHHHHHHHHHHcc--CCCeEEEEecCH-HHHHhhcceEEEeeCCe
Q 008771 265 QMRMSLGKILL--QDPDLLLLDEPTNH--LDLDTIEWLEGYLGK--QDVPMVIISHDR-AFLDQLCTKIVETEMGV 333 (554)
Q Consensus 265 rqRv~LAraL~--~~p~lLlLDEPt~~--LD~~~~~~l~~~l~~--~g~tvIiisHd~-~~l~~~~d~i~~l~~g~ 333 (554)
+..+..|+..+ .+.|+|||||.+.. ++.-....+.++|.+ ....||+++++. ..+.+.||-|.+|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 33445566666 56899999999864 333344456777654 356777777764 56667899999997654
No 478
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.95 E-value=0.0031 Score=61.46 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|++|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 479
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.95 E-value=0.0031 Score=61.46 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|+|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 480
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.95 E-value=0.0037 Score=56.12 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 008771 452 KTAIIGPNGCGKSTLLKLI 470 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L 470 (554)
+|+|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 481
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.95 E-value=0.0011 Score=62.41 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
+|+|+|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999998876543
No 482
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.94 E-value=0.0068 Score=64.17 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHH-HHHHccCCCe--EEEEec
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGYLGKQDVP--MVIISH 314 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l-~~~l~~~g~t--vIiisH 314 (554)
|+..+.+++.-|...+.+.+++|.|+|. +++...... ..+.++.+.. +|||.+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7788888988888888888999999884 566554433 3334445667 887765
No 483
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.92 E-value=0.0036 Score=59.12 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
+-+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999997
No 484
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.92 E-value=0.0039 Score=57.84 Aligned_cols=23 Identities=43% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
No 485
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.91 E-value=0.022 Score=53.05 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=39.3
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH----------HHHHhhcceEEEee
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR----------AFLDQLCTKIVETE 330 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~----------~~l~~~~d~i~~l~ 330 (554)
.+.+++++||.-- +|++..+.+..+. +.+.+||+..+|. ..+..+||.|..|.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~-~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIA-ESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHH-HTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHH-hCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999544 8877766555444 4489999998864 55667899998875
No 486
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.88 E-value=0.0045 Score=56.68 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998543
No 487
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.85 E-value=0.0012 Score=62.11 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
+++|+|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 488
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.84 E-value=0.0032 Score=57.96 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998543
No 489
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.83 E-value=0.0034 Score=57.79 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.7
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.++-.|.|+|+.||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999754
No 490
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.82 E-value=0.0018 Score=68.26 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=31.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~ 484 (554)
++.+++++|+|||||||++..|++.+.+..+.|.+-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 578999999999999999999999888876666553
No 491
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.81 E-value=0.0039 Score=61.24 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 286 PTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 286 Pt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
|||+++..+...+.+.+ .....+..+.+|....+.+.++++...
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 99999988776666654 334455567788888888888887654
No 492
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.76 E-value=0.0054 Score=56.14 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+.+|.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999754
No 493
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0044 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+|+|+|+.||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999985
No 494
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.75 E-value=0.0051 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.2
Q ss_pred CEEEEECCCCccHHHHHHHHHC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G 145 (554)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 495
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.75 E-value=0.0057 Score=56.82 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 496
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.74 E-value=0.0049 Score=57.25 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=24.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+|-+|+|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 497
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.73 E-value=0.0048 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
..+.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999843
No 498
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.73 E-value=0.0049 Score=57.28 Aligned_cols=21 Identities=52% Similarity=0.771 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~ 473 (554)
|.|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 499
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.72 E-value=0.0046 Score=57.34 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.7
Q ss_pred CCEEEEECCCCccHHHHHHHHHCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 500
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.71 E-value=0.005 Score=57.23 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987554
Done!