BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008772
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 7/181 (3%)
Query: 74 RFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENL-DEAHSSXXXXXXXXXXXXEECATL 132
R+ D ++N KI L R + LEVD +VN+ N +L +EC TL
Sbjct: 53 RYKKDKQLNEKISLLRSDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTL 112
Query: 133 GGCRTGMAKVTNAR------VIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSI 186
C+TG AK+T VIHTVGP + + L CY S L+LL+E+ L+S+
Sbjct: 113 QSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSV 172
Query: 187 AMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYF 246
A CI T YP E AA + + T+R +LE+ KDK+ ++ C D +IY+ LP YF
Sbjct: 173 AFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRLPHYF 232
Query: 247 P 247
P
Sbjct: 233 P 233
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 13/173 (7%)
Query: 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SXXXXXXXXXXXXEECATL----GGC 135
+ ++I++ +G+ L VD +VN+ N +L + C + G C
Sbjct: 1 MKTRIHVVQGDITKLAVDVIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60
Query: 136 RTGMAKVTNA------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 189
TG A +T A V+HTVGP + + L Y + L L+ N S+A
Sbjct: 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNE-DQLLQDAYLNSLRLVAANSYTSVAFP 119
Query: 190 CIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLL 242
I T YPR AA +A++TV F+ + V F + +Y+RLL
Sbjct: 120 AISTGVYGYPRAAAAEIAVKTVSEFITRHALP-EQVYFVCYDEENAHLYERLL 171
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 83 SKIYLWRGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAK 141
++I + +G+ + D +VN+ N L A + EEC +G R G A
Sbjct: 2 ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAA 61
Query: 142 VTNA------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEA 195
VT A VIH + A+ + +S LE +E GLK++A + T
Sbjct: 62 VTGAGNLPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGV 117
Query: 196 KNYPREPAAHVAIRTVRR 213
P E A V + +++
Sbjct: 118 GGLPVEAVARVXLEEIKK 135
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 94 NLEVDTVVNSTNENLDEAHS--SXXXXXXXXXXXXEECATLG-GCRTGMAKVTNAR---- 146
N + D VVNS +L + S EE T+G G M V
Sbjct: 50 NAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNL 109
Query: 147 ----VIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREP 202
V+H V P++ T++ + R C+E+ LKSIA I T +P+
Sbjct: 110 DCRYVLHVVAPEWR-NGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNI 168
Query: 203 AAHVAIRTVRRFLEKQKDK 221
A + I V +F K + K
Sbjct: 169 FAELIISEVFKFSSKNQLK 187
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 147 VIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHV 206
VIH P + E L ++CL L + LKSIA I + +P++ AA +
Sbjct: 94 VIHCNSPVWG---SDKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQL 150
Query: 207 AIRTVRR-FLEKQKDKISAVVFCTTTASDTEIY 238
++ + F+ I V F + IY
Sbjct: 151 ILKAISSYFVSTMSSSIKTVYFVLFDSESIGIY 183
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 147 VIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHV 206
VIH P + E L ++CL L + LKSIA I + +P++ AA +
Sbjct: 115 VIHCNSPVWGADK---CEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQL 171
Query: 207 AIRTVRR-FLEKQKDKISAVVFCTTTASDTEIY 238
++ + F+ I V F + IY
Sbjct: 172 ILKAISSYFVSTMSSSIKTVYFVLFDSESIGIY 204
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 147 VIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHV 206
VIH P + E L ++CL L + LKSIA I + +P++ AA +
Sbjct: 112 VIHCNSPVWGAD---KCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQL 168
Query: 207 AIRTVRR-FLEKQKDKISAVVFCTTTASDTEIY 238
++ + F+ I V F + IY
Sbjct: 169 ILKAISSYFVSTMSSSIKTVYFVLFDSESIGIY 201
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 89 RGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAKVTNA-- 145
+G+ + D +VN+ N L A + EEC +G R G A VT A
Sbjct: 8 QGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGN 67
Query: 146 ----RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 201
VIH + A+ + +S LE +E GLK++A + P E
Sbjct: 68 LPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAE 123
Query: 202 PAAHVAIRTVRR 213
V + +++
Sbjct: 124 AVLRVMLEEIKK 135
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 89 RGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAKVTNA-- 145
+G+ + D +VN+ N L A + EEC +G R G A VT A
Sbjct: 8 QGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGN 67
Query: 146 ----RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 201
VIH + A+ + +S LE +E GLK++A + P E
Sbjct: 68 LPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAE 123
Query: 202 PAAHVAIRTVRR 213
V + +++
Sbjct: 124 AVLRVMLEEIKK 135
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 89 RGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAKVTNA-- 145
+G+ + D +VN+ N L A + EEC +G R G A VT A
Sbjct: 8 QGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGN 67
Query: 146 ----RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 201
VIH + A+ + +S LE +E GLK++A + P E
Sbjct: 68 LPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAE 123
Query: 202 PAAHVAIRTVRR 213
V + +++
Sbjct: 124 AVLRVMLEEIKK 135
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 11/132 (8%)
Query: 89 RGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAKVTNA-- 145
+G+ + D +VN+ N L A + EEC +G R G A VT A
Sbjct: 8 QGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGN 67
Query: 146 ----RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 201
VIH + A+ + +S LE +E GLK++A + P E
Sbjct: 68 LPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAE 123
Query: 202 PAAHVAIRTVRR 213
V +++
Sbjct: 124 AVFRVXFEEIKK 135
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 137 TGMAKVT---NARVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYT 193
TG A++T +VIH VGP + A L + Y + +L+ E+ +KS+A+ + T
Sbjct: 394 TGTARMTVCLGKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLST 453
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 83 SKIYLWRGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAK 141
++I +G+ + D +VN+ N L A + EEC +G R G A
Sbjct: 2 ARIRAVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAA 61
Query: 142 VTNA------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEA 195
VT A VIH + A+ + +S LE +E GLK++A +
Sbjct: 62 VTGAGNLPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWV 117
Query: 196 KNYPREPAAHVAIRTVRR 213
P E V +++
Sbjct: 118 GGLPAEAVLRVXDEEIKK 135
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 146 RVIHTVGPK-YAVKYH--TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREP 202
R++ T G A+ H TAA A H +CL L++ S A G + EA+NY
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD----SAAPGTLDLEARNYDGLT 118
Query: 203 AAHVAIR-----TVRRFLEKQKDKISAV 225
A HVA+ TV+ LE+ D I AV
Sbjct: 119 ALHVAVNTECQETVQLLLERGAD-IDAV 145
>pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
pdb|3P7Z|B Chain B, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
Length = 276
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 389 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV--YFHSA 446
+ I Y+ G G PV V F ++ + + +V+ +P KPY IV H+
Sbjct: 29 LSIFYQAGTSKAGNPVFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 88
Query: 447 ASLQLQPDL 455
S + + D
Sbjct: 89 PSNRFKTDF 97
>pdb|3PEG|B Chain B, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
pdb|3PEG|A Chain A, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
Length = 290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 389 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV 441
+ I Y+ G G P+ V F ++ + + +V+ +P KPY IV
Sbjct: 29 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIV 81
>pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
pdb|2E2X|B Chain B, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
Length = 277
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 389 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV--YFHSA 446
+ I Y+ G G P+ V F ++ + + +V+ +P KPY IV H+
Sbjct: 30 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 89
Query: 447 ASLQLQPDL 455
S + + D
Sbjct: 90 PSNRFKTDF 98
>pdb|2D4Q|A Chain A, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
pdb|2D4Q|B Chain B, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
Length = 257
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 389 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV--YFHSA 446
+ I Y+ G G P+ V F ++ + + +V+ +P KPY IV H+
Sbjct: 10 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 69
Query: 447 ASLQLQPDL 455
S + + D
Sbjct: 70 PSNRFKTDF 78
>pdb|3PG7|A Chain A, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
pdb|3PG7|B Chain B, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
Length = 256
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 389 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV--YFHSA 446
+ I Y+ G G P+ V F ++ + + +V+ +P KPY IV H+
Sbjct: 10 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 69
Query: 447 ASLQLQPDL 455
S + + D
Sbjct: 70 PSNRFKTDF 78
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 147 VIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYT 193
+IH VGP + + L+ Y S +++ +N KS+A+ + T
Sbjct: 67 IIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLST 113
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 362 LSAAEEYSLHSRYLAKANSLNLSEIAE 388
L AAEEYS++ +LAK N+ N + +A+
Sbjct: 183 LRAAEEYSMNLGFLAKGNASNDASLAD 209
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 362 LSAAEEYSLHSRYLAKANSLNLSEIAE 388
L AAEEYS++ +LAK N+ N + +A+
Sbjct: 183 LRAAEEYSMNLGFLAKGNASNDASLAD 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,763,445
Number of Sequences: 62578
Number of extensions: 535360
Number of successful extensions: 1140
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 22
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)