Query 008772
Match_columns 554
No_of_seqs 390 out of 1904
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 16:23:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 5.4E-41 1.2E-45 318.8 20.1 160 77-239 12-185 (186)
2 PRK04143 hypothetical protein; 100.0 7.9E-39 1.7E-43 319.3 19.6 164 81-245 81-262 (264)
3 cd02908 Macro_Appr_pase_like M 100.0 8.7E-38 1.9E-42 294.6 19.3 158 84-243 1-165 (165)
4 cd02905 Macro_GDAP2_like Macro 100.0 3.5E-38 7.6E-43 288.4 16.0 133 83-215 1-140 (140)
5 cd02907 Macro_Af1521_BAL_like 100.0 2E-37 4.4E-42 294.8 20.3 164 82-245 1-175 (175)
6 PRK00431 RNase III inhibitor; 100.0 1.5E-35 3.3E-40 282.5 19.2 161 82-244 2-173 (177)
7 cd02906 Macro_1 Macro domain, 100.0 8.7E-34 1.9E-38 261.9 14.4 129 84-212 1-147 (147)
8 COG2110 Predicted phosphatase 100.0 2.1E-33 4.6E-38 264.2 16.2 160 83-245 3-175 (179)
9 KOG2633 Hismacro and SEC14 dom 100.0 1.2E-32 2.6E-37 259.8 14.3 174 69-251 19-199 (200)
10 cd02903 Macro_BAL_like Macro d 100.0 5.9E-32 1.3E-36 247.2 15.4 127 84-214 2-137 (137)
11 cd03330 Macro_2 Macro domain, 100.0 6E-28 1.3E-32 219.6 15.1 124 85-211 2-132 (133)
12 PF13716 CRAL_TRIO_2: Divergen 99.9 9.2E-26 2E-30 208.7 8.7 143 390-534 2-149 (149)
13 cd02900 Macro_Appr_pase Macro 99.9 5.1E-24 1.1E-28 203.1 14.7 131 84-215 30-186 (186)
14 cd02749 Macro Macro domain, a 99.9 1.1E-23 2.4E-28 194.3 14.7 128 84-211 1-146 (147)
15 smart00506 A1pp Appr-1"-p proc 99.9 1.2E-23 2.7E-28 190.4 14.0 122 85-207 2-133 (133)
16 PRK13341 recombination factor 99.9 1.3E-25 2.9E-30 253.6 -0.2 162 81-246 473-706 (725)
17 KOG4406 CDC42 Rho GTPase-activ 99.9 1.6E-22 3.4E-27 206.8 13.9 172 383-554 71-247 (467)
18 PF01661 Macro: Macro domain; 99.9 2.6E-22 5.6E-27 177.7 10.8 107 101-207 1-118 (118)
19 smart00516 SEC14 Domain in hom 99.8 1.4E-20 3E-25 174.7 12.9 126 396-522 14-149 (158)
20 cd00170 SEC14 Sec14p-like lipi 99.8 3.1E-19 6.7E-24 163.7 12.4 135 390-524 9-152 (157)
21 KOG1470 Phosphatidylinositol t 99.8 1.5E-18 3.3E-23 176.0 12.4 139 383-522 91-235 (324)
22 PF00650 CRAL_TRIO: CRAL/TRIO 99.8 8.3E-19 1.8E-23 162.9 7.7 139 385-523 2-153 (159)
23 cd02901 Macro_Poa1p_like Macro 99.7 7.5E-18 1.6E-22 154.5 11.8 126 84-212 1-138 (140)
24 KOG1471 Phosphatidylinositol t 99.5 2.1E-13 4.4E-18 141.7 10.4 132 392-523 97-250 (317)
25 PHA02595 tk.4 hypothetical pro 99.3 3.7E-11 8.1E-16 112.0 13.7 124 84-210 2-140 (154)
26 PF14519 Macro_2: Macro-like d 98.3 4.4E-06 9.4E-11 83.8 9.9 134 83-217 42-216 (280)
27 cd03331 Macro_Poa1p_like_SNF2 98.0 0.00015 3.3E-09 67.4 13.3 121 85-207 2-145 (152)
28 KOG1826 Ras GTPase activating 97.8 1.7E-05 3.7E-10 94.0 3.7 183 354-537 1509-1710(2724)
29 TIGR02452 conserved hypothetic 97.7 0.0012 2.6E-08 66.8 15.0 151 82-233 55-255 (266)
30 COG4295 Uncharacterized protei 95.2 0.097 2.1E-06 50.7 8.6 82 162-244 197-280 (285)
31 PF10154 DUF2362: Uncharacteri 95.0 0.12 2.7E-06 56.7 9.9 113 135-247 372-503 (510)
32 KOG1826 Ras GTPase activating 36.5 78 0.0017 40.4 6.7 125 354-481 1668-1803(2724)
33 PF03641 Lysine_decarbox: Poss 36.1 75 0.0016 28.6 5.2 63 455-517 64-133 (133)
34 PF11964 SpoIIAA-like: SpoIIAA 35.4 1.7E+02 0.0037 24.6 7.2 88 416-512 10-102 (109)
35 cd06155 eu_AANH_C_1 A group of 27.8 1.4E+02 0.0031 25.2 5.4 49 199-247 23-74 (101)
36 PF01042 Ribonuc_L-PSP: Endori 21.9 3.1E+02 0.0068 23.8 6.6 51 199-249 40-93 (121)
37 COG2388 Predicted acetyltransf 21.8 99 0.0021 26.7 3.1 40 146-190 41-80 (99)
38 PHA00684 hypothetical protein 20.9 1.7E+02 0.0037 26.4 4.4 45 164-208 55-99 (128)
39 PF01740 STAS: STAS domain; I 20.6 1.4E+02 0.003 25.6 3.9 65 438-512 49-116 (117)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=5.4e-41 Score=318.80 Aligned_cols=160 Identities=22% Similarity=0.374 Sum_probs=148.2
Q ss_pred ccCCCCCEEEEEECCC--cceeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHh----CCCCCCCEEEccc----
Q 008772 77 VDHEINSKIYLWRGNP--WNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNA---- 145 (554)
Q Consensus 77 ~~~~~n~~I~i~~GDI--~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~---- 145 (554)
.....|.+|.+|+||| |+++||||||+||++|.+++| ++||+++||++|++||+++ ++|++|++++|+|
T Consensus 12 ~~~~~~~~i~i~~gDI~~t~~~vDaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~~Lp 91 (186)
T cd02904 12 KSLFLGQKLSLVQSDISIGSIDVEGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAHGLP 91 (186)
T ss_pred hhhcCCCEEEEEECCccccceeccEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCCCCC
Confidence 3445689999999999 999999999999999999887 5999999999999999865 7899999999998
Q ss_pred --eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCc
Q 008772 146 --RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKI 222 (554)
Q Consensus 146 --~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~-~~i 222 (554)
||||+|||.|+.+ ..++.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|+++++ +++
T Consensus 92 ~k~VIHtVgP~~~~~---~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~l 168 (186)
T cd02904 92 AKFVIHCHSPQWGSD---KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSSI 168 (186)
T ss_pred CCEEEEeCCCCCCCC---chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999654 2468999999999999999999999999999999999999999999999999999874 679
Q ss_pred cEEEEEecChhhHHHHH
Q 008772 223 SAVVFCTTTASDTEIYK 239 (554)
Q Consensus 223 ~~V~fv~~~~~~~~~y~ 239 (554)
++|+||+++++++++|.
T Consensus 169 ~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 169 KQIYFVLFDSESIGIYV 185 (186)
T ss_pred cEEEEEECCHHHHHHhh
Confidence 99999999999999985
No 2
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=7.9e-39 Score=319.31 Aligned_cols=164 Identities=40% Similarity=0.608 Sum_probs=149.6
Q ss_pred CCCEEEEEECCCcceeccEEEEcCCcCCCCC-----CC-HHHHHHhhChhHHHHHHHh-----CCCCCCCEEEccc----
Q 008772 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEA-----HS-SPGLHAAAGPGLAEECATL-----GGCRTGMAKVTNA---- 145 (554)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~-----~g-~~aI~~~aG~~l~~e~~~~-----~~~~~G~~~vT~~---- 145 (554)
.|.+|.||+||||++++|||||+||+.|.++ || +++||++||++|++||+++ +.+++|+|++|+|
T Consensus 81 ~~~~i~i~~GDIt~l~vDAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~iT~~~nLp 160 (264)
T PRK04143 81 KYDNIFLWQGDITRLKVDAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRAYNLP 160 (264)
T ss_pred CCCEEEEEECCcceeecCEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEEecCCCCC
Confidence 4789999999999999999999999999853 44 5899999999999999875 3689999999999
Q ss_pred --eEEEEcCccccC-CCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCc
Q 008772 146 --RVIHTVGPKYAV-KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKI 222 (554)
Q Consensus 146 --~IIH~VgP~~~~-~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i 222 (554)
||||||||.|+. ......++.|++||++||++|.++|++|||||+||||++|||+++||++|++++++|++++++.
T Consensus 161 ~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~- 239 (264)
T PRK04143 161 AKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSK- 239 (264)
T ss_pred CCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-
Confidence 999999999987 3444567899999999999999999999999999999999999999999999999999998765
Q ss_pred cEEEEEecChhhHHHHHHHcccc
Q 008772 223 SAVVFCTTTASDTEIYKRLLPLY 245 (554)
Q Consensus 223 ~~V~fv~~~~~~~~~y~~~l~~y 245 (554)
.+|+|++++++++++|+++|..+
T Consensus 240 ~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 240 LKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHh
Confidence 68999999999999999988643
No 3
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=8.7e-38 Score=294.58 Aligned_cols=158 Identities=44% Similarity=0.693 Sum_probs=148.9
Q ss_pred EEEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHhCCCCCCCEEEccc------eEEEEcCcccc
Q 008772 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNA------RVIHTVGPKYA 156 (554)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~------~IIH~VgP~~~ 156 (554)
||+||+|||+++++|||||++|++|.++|| +++|+++||++|++||++++++++|++++|++ ||||+|||.|+
T Consensus 1 ~i~i~~GdI~~~~~daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~~~~~G~~v~T~~~~l~~~~IiH~v~P~~~ 80 (165)
T cd02908 1 KIEIIQGDITKLEVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRGCPTGEAVITSGYNLPAKYVIHTVGPVWR 80 (165)
T ss_pred CeEEEecccceeecCEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCCEEEeeCCCCCCCEEEEEcCCccc
Confidence 589999999999999999999999999887 59999999999999999999999999999988 99999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHH
Q 008772 157 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 236 (554)
Q Consensus 157 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~ 236 (554)
.+ ...+.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+++ .+++++|+||++++++++
T Consensus 81 ~~-~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~-~~~l~~V~~v~~~~~~~~ 158 (165)
T cd02908 81 GG-QHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEE-HDAIERVIFVCFSEEDYE 158 (165)
T ss_pred CC-CCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEeCCHHHHH
Confidence 76 3445789999999999999999999999999999999999999999999999999988 567999999999999999
Q ss_pred HHHHHcc
Q 008772 237 IYKRLLP 243 (554)
Q Consensus 237 ~y~~~l~ 243 (554)
+|+++|.
T Consensus 159 ~f~~~l~ 165 (165)
T cd02908 159 IYEKALS 165 (165)
T ss_pred HHHHHhC
Confidence 9998763
No 4
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=3.5e-38 Score=288.41 Aligned_cols=133 Identities=59% Similarity=0.914 Sum_probs=128.0
Q ss_pred CEEEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHhCCCCCCCEEEccc------eEEEEcCccc
Q 008772 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNA------RVIHTVGPKY 155 (554)
Q Consensus 83 ~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~------~IIH~VgP~~ 155 (554)
.+|.||+|||+++++|||||++|++|.+++| +++|+++||++|++||+++++|++|++++|+| ||||+|||.|
T Consensus 1 ~ki~l~~GdIt~~~vDaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~~~~~G~~~~T~~~~L~~k~VIH~vgP~~ 80 (140)
T cd02905 1 NRIVLWEGDICNLNVDAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLGGCRTGEAKLTKGYNLPARFIIHTVGPKY 80 (140)
T ss_pred CeEEEEeCccCcccCCEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCcEEEecCCCCCccEEEEecCCcc
Confidence 3799999999999999999999999998877 59999999999999999999999999999999 9999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHH
Q 008772 156 AVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 215 (554)
Q Consensus 156 ~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl 215 (554)
+.++.+++++.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++||
T Consensus 81 ~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 81 NVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 998888888999999999999999999999999999999999999999999999999995
No 5
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=2e-37 Score=294.84 Aligned_cols=164 Identities=26% Similarity=0.419 Sum_probs=154.4
Q ss_pred CCEEEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHh----CCCCCCCEEEccc------eEEEE
Q 008772 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNA------RVIHT 150 (554)
Q Consensus 82 n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~------~IIH~ 150 (554)
|.+|+||+|||+++++|||||++|+.+.+++| +++|+++||++|++||+++ ++|++|++++|+| ||||+
T Consensus 1 ~~~i~i~~GdI~~~~~DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~~~~L~~k~IiH~ 80 (175)
T cd02907 1 GVTLSVIKGDITRFPVDAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTSAGKLPCKYVIHA 80 (175)
T ss_pred CcEEEEEECCcceeecCEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCCCEEEEe
Confidence 57899999999999999999999999998887 5999999999999999764 8899999999998 99999
Q ss_pred cCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEec
Q 008772 151 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 230 (554)
Q Consensus 151 VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~ 230 (554)
|+|.|+.+......+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++++++.+++|+||++
T Consensus 81 v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~ 160 (175)
T cd02907 81 VGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDY 160 (175)
T ss_pred CCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEEC
Confidence 99999987666678899999999999999999999999999999999999999999999999999998778999999999
Q ss_pred ChhhHHHHHHHcccc
Q 008772 231 TASDTEIYKRLLPLY 245 (554)
Q Consensus 231 ~~~~~~~y~~~l~~y 245 (554)
++.++++|++.|..|
T Consensus 161 ~~~~~~~~~~al~~~ 175 (175)
T cd02907 161 DEQTVEAFEKALEVF 175 (175)
T ss_pred CHHHHHHHHHHHhhC
Confidence 999999999988754
No 6
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=1.5e-35 Score=282.47 Aligned_cols=161 Identities=39% Similarity=0.588 Sum_probs=150.4
Q ss_pred CCEEEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHh----CCCCCCCEEEccc------eEEEE
Q 008772 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNA------RVIHT 150 (554)
Q Consensus 82 n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~------~IIH~ 150 (554)
+.+|+|++|||+++++|||||++|+++.++|| +++|+++||+++++||+++ ++|++|++++|++ ||||+
T Consensus 2 ~~~i~i~~Gdi~~~~~daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~~~~l~~~~IiH~ 81 (177)
T PRK00431 2 GMRIEVVQGDITELEVDAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPAKYVIHT 81 (177)
T ss_pred CcEEEEEeCCcccccCCEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCCCCCEEEEe
Confidence 67999999999999999999999999998887 5999999999999999987 8999999999988 99999
Q ss_pred cCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEec
Q 008772 151 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 230 (554)
Q Consensus 151 VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~ 230 (554)
|||.|+..... +.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+++. +++++|+||++
T Consensus 82 v~P~~~~~~~~-~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~-~~l~~I~~v~~ 159 (177)
T PRK00431 82 VGPVWRGGEDN-EAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRH-KSPEEVYFVCY 159 (177)
T ss_pred cCCeecCCCCc-HHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcC-CCcCEEEEEEC
Confidence 99999876554 57899999999999999999999999999999999999999999999999998654 57999999999
Q ss_pred ChhhHHHHHHHccc
Q 008772 231 TASDTEIYKRLLPL 244 (554)
Q Consensus 231 ~~~~~~~y~~~l~~ 244 (554)
+++++++|+++|..
T Consensus 160 ~~~~~~~f~~~l~~ 173 (177)
T PRK00431 160 DEEAYRLYERLLTQ 173 (177)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998863
No 7
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=8.7e-34 Score=261.89 Aligned_cols=129 Identities=43% Similarity=0.686 Sum_probs=118.3
Q ss_pred EEEEEECCCcceeccEEEEcCCcCCCCC-----CC-HHHHHHhhChhHHHHHHHh----C-CCCCCCEEEccc------e
Q 008772 84 KIYLWRGNPWNLEVDTVVNSTNENLDEA-----HS-SPGLHAAAGPGLAEECATL----G-GCRTGMAKVTNA------R 146 (554)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~-----~g-~~aI~~~aG~~l~~e~~~~----~-~~~~G~~~vT~~------~ 146 (554)
+|+||+|||+++++|||||+||++|.++ || +++|+++||++|++||+++ + .|++|++++|++ |
T Consensus 1 ~i~v~~GdIt~~~~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~~~~L~~k~ 80 (147)
T cd02906 1 SIYLWKGDITTLKVDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPGYNLPAKY 80 (147)
T ss_pred CeEEEECCcCCccCCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCE
Confidence 5889999999999999999999999743 55 5899999999999999875 3 689999999999 9
Q ss_pred EEEEcCccccCCCc-hhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHH
Q 008772 147 VIHTVGPKYAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 212 (554)
Q Consensus 147 IIH~VgP~~~~~~~-~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~ 212 (554)
|||+|||+|+.++. ....+.|++||++||++|.+++++|||||+||||++|||++++|++|+++||
T Consensus 81 VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 81 VIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred EEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 99999999988764 3457899999999999999999999999999999999999999999999985
No 8
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=264.23 Aligned_cols=160 Identities=35% Similarity=0.555 Sum_probs=146.7
Q ss_pred CEEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHhC----C--CCCCCEEEccc------eEEE
Q 008772 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLG----G--CRTGMAKVTNA------RVIH 149 (554)
Q Consensus 83 ~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~~----~--~~~G~~~vT~~------~IIH 149 (554)
..|.+++||||++++|||||+||+.|.+|||+ .||++++||+|+++|+++. + +++|++++|++ ||||
T Consensus 3 ~~i~~v~GDIt~~~~daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~~ViH 82 (179)
T COG2110 3 TNIRVVQGDITKLEADAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAKYVIH 82 (179)
T ss_pred ceEEEEecccceeehhheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCCEEEe
Confidence 57999999999999999999999999998886 8999999999999998753 3 66799999998 9999
Q ss_pred EcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEe
Q 008772 150 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 229 (554)
Q Consensus 150 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~ 229 (554)
+|||.|..+.+. ..+.|..||+++|++|.++|++|||||+||||++|||++++|.++++++++|+.. ..+..|+|++
T Consensus 83 ~vgp~~~~g~~~-~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~--~~~~~v~~v~ 159 (179)
T COG2110 83 TVGPSWRGGSKD-EAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE--ASIETVIFVV 159 (179)
T ss_pred cCCCcccCCChh-HHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc--ccccEEEEEe
Confidence 999999887443 4579999999999999999999999999999999999999999999999999976 4688999999
Q ss_pred cChhhHHHHHHHcccc
Q 008772 230 TTASDTEIYKRLLPLY 245 (554)
Q Consensus 230 ~~~~~~~~y~~~l~~y 245 (554)
+++++...|++++...
T Consensus 160 ~~~e~~~~~~~~~~~~ 175 (179)
T COG2110 160 YGEETARVYEELLSTH 175 (179)
T ss_pred cCchhHHHHHHHHhhh
Confidence 9999999999887654
No 9
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.2e-32 Score=259.84 Aligned_cols=174 Identities=43% Similarity=0.641 Sum_probs=157.9
Q ss_pred CCCCCCCcccCCCCCEEEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHhCCCCCCCEEEccc--
Q 008772 69 NGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNA-- 145 (554)
Q Consensus 69 ~~~~~~f~~~~~~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~-- 145 (554)
...-++|+++...|.+|.+|+||++.+++|||| |..|++ +.+||++|||++..||..+..|++|.+++|+|
T Consensus 19 ~~~l~~f~~~~~~~~~i~lwr~d~~~l~v~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~ 92 (200)
T KOG2633|consen 19 ITSLEVFKIDKPDNGGISLWRGDGKTLEVDAVV------LLGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYG 92 (200)
T ss_pred ccccchhhccCccccCeeEeecccccccceeee------eccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCC
Confidence 345679999999999999999999999999998 566665 59999999999999999999999999999997
Q ss_pred ----eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCC
Q 008772 146 ----RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDK 221 (554)
Q Consensus 146 ----~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~ 221 (554)
+|||+|||+|-..+.+++. .|+.||++||.+|.+++++|||||+|++|++|||.+.||++.++++++|++++.+.
T Consensus 93 Lpak~vIHtvgP~~~~d~~~~~~-~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d~ 171 (200)
T KOG2633|consen 93 LPAKRVIHTVGPRWKEDKLQECY-FLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKDS 171 (200)
T ss_pred CceeEEEEecCchhhccchHHHH-HHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCCc
Confidence 9999999999998888776 89999999999999999999999999999999999999999999999999998854
Q ss_pred ccEEEEEecChhhHHHHHHHccccCCCChh
Q 008772 222 ISAVVFCTTTASDTEIYKRLLPLYFPRDKH 251 (554)
Q Consensus 222 i~~V~fv~~~~~~~~~y~~~l~~yfpr~~~ 251 (554)
. +++|.+.+.|.+.|..+++.|||++..
T Consensus 172 ~--l~~~~f~~~d~e~~~~~l~~~~~~~~~ 199 (200)
T KOG2633|consen 172 S--LKTVPFLDYDSESYGAYLPEYAPSDAK 199 (200)
T ss_pred e--EEEEEEeccCCchHHHHHhhhcccccc
Confidence 4 555555566788899999999998754
No 10
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.98 E-value=5.9e-32 Score=247.17 Aligned_cols=127 Identities=27% Similarity=0.322 Sum_probs=118.9
Q ss_pred EEEEEECCCcceeccEEEEcCCcC-CCCCCC-HHHHHHhhChhHHHHHHHhCCCCC-CCEEEccc------eEEEEcCcc
Q 008772 84 KIYLWRGNPWNLEVDTVVNSTNEN-LDEAHS-SPGLHAAAGPGLAEECATLGGCRT-GMAKVTNA------RVIHTVGPK 154 (554)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~-l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~-G~~~vT~~------~IIH~VgP~ 154 (554)
+|+|++|||+++++|||||++|++ +.++|| +++|+++||+++++||++++.++. |++++|+| ||||+|+|.
T Consensus 2 ~i~i~~GdI~~~~~DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p~ 81 (137)
T cd02903 2 TLQVAKGDIEDETTDVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLPN 81 (137)
T ss_pred EEEEEeCccCCccCCEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCCC
Confidence 689999999999999999999999 667666 589999999999999999988885 99999998 999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHH
Q 008772 155 YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRF 214 (554)
Q Consensus 155 ~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~f 214 (554)
|..+ ..+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|
T Consensus 82 ~~~~----~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 82 WSNG----ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCCc----hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 9765 4678999999999999999999999999999999999999999999999886
No 11
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.95 E-value=6e-28 Score=219.62 Aligned_cols=124 Identities=23% Similarity=0.329 Sum_probs=115.7
Q ss_pred EEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHhCCCCCCCEEEccc------eEEEEcCccccC
Q 008772 85 IYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNA------RVIHTVGPKYAV 157 (554)
Q Consensus 85 I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~------~IIH~VgP~~~~ 157 (554)
|++|+|||+++++|||||++|+.+.+++| +++|++++|+++++||.+.+.+++|++++|++ ||||+++|.+..
T Consensus 2 i~i~~GdI~~~~~DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~~~~~G~~~~t~~~~l~~k~Iih~~~~~~~~ 81 (133)
T cd03330 2 LEVVQGDITKVDADAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKAPIPVGEAVITGAGDLPARYVIHAATMEEPG 81 (133)
T ss_pred EEEEEcccccccCCEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCCeEEEEeCCCCCCCEEEEeCCCCCCC
Confidence 78999999999999999999999999888 59999999999999999999999999999977 899999998654
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHH
Q 008772 158 KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTV 211 (554)
Q Consensus 158 ~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v 211 (554)
....+.|++||++||+.|.+++++|||||+||||++|||++++|++|.++|
T Consensus 82 ---~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 82 ---RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 233568999999999999999999999999999999999999999999876
No 12
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.92 E-value=9.2e-26 Score=208.74 Aligned_cols=143 Identities=38% Similarity=0.668 Sum_probs=112.9
Q ss_pred cceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHh-hhhcCCCeEEEEEcCCCCCCCCCCHHHHHHHHHHHhHH
Q 008772 390 KIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEF-EPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRK 468 (554)
Q Consensus 390 ~~~y~~G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~L-e~~~~~~fviV~D~tg~s~~~~~~~~~lkk~~~~l~~~ 468 (554)
.++|.+|+|++||||+++.++++ +...|++.+++|++.++ +....++|++|+|+++++..+.++++|+++++++++..
T Consensus 2 ~~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~ 80 (149)
T PF13716_consen 2 IFFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPRK 80 (149)
T ss_dssp SE-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-HH
T ss_pred eEEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHHH
Confidence 46789999999999999999999 76679999999999999 78788999999999999999999999999999999999
Q ss_pred hhcccceEEEEcCChhhHHHH-HHhhhcccccc-cceEEEECCHhHHhccCCCCCC--CCChHHHHhhhh
Q 008772 469 HQRNLHAIYVLHPTFHLKATI-FTLQLLVDNVV-WKKVVYVDRLLQLFRYVPREQL--TIPDFVFQHDLE 534 (554)
Q Consensus 469 ~p~rLk~iyiVnp~~~~k~~~-~~~~~Fls~K~-~~KI~~~~~leeL~~~I~~e~L--~iP~~v~~~d~~ 534 (554)
+++||+++|||||++++|.++ .+.+++.+.|+ ++||++++++++|.++||++|| .|| .|++||+|
T Consensus 81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp-~~~~~d~~ 149 (149)
T PF13716_consen 81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHIDPSQLPESLP-GVLQYDHE 149 (149)
T ss_dssp HHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTSGGGG-------HHH-----
T ss_pred HhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhCCHHHhcccCC-CEEecCcC
Confidence 999999999999999999999 66688889999 9999999999999999999999 999 99999975
No 13
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.91 E-value=5.1e-24 Score=203.10 Aligned_cols=131 Identities=17% Similarity=0.092 Sum_probs=109.9
Q ss_pred EEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhC-hhHHHHHHH------hCCCCCCCEEEccc----------
Q 008772 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAG-PGLAEECAT------LGGCRTGMAKVTNA---------- 145 (554)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG-~~l~~e~~~------~~~~~~G~~~vT~~---------- 145 (554)
.|..+.+|++..++||||||||+.+.+|||+ .||++++| ++|+++|++ .+.|++|++++|++
T Consensus 30 ~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~~~ 109 (186)
T cd02900 30 TIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKTIY 109 (186)
T ss_pred ecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCccccccc
Confidence 3444445555555899999999999999985 89999999 689999965 27899999999966
Q ss_pred ------eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHc--CCccccccccccCCCCCChHHHHHHHHHHHHHHH
Q 008772 146 ------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIEN--GLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 215 (554)
Q Consensus 146 ------~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~--~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl 215 (554)
||||++++++...... ..+.|+.||+++|++|.++ +++|||||+||||.+|||++++|++|+.+++.|+
T Consensus 110 ~~~~~~~iIHaPtm~~P~~~~~-~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 110 CRWGIPYLIHAPTMRVPSPVIT-GTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred cccCCCEEEEcCcccCCCCCCC-cHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 7999988666422122 2468999999999999987 8999999999999999999999999999999884
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.91 E-value=1.1e-23 Score=194.26 Aligned_cols=128 Identities=33% Similarity=0.454 Sum_probs=117.8
Q ss_pred EEEEEECCCcc-eeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHhCC---CCCCCEEEccc-------eEEEEc
Q 008772 84 KIYLWRGNPWN-LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGG---CRTGMAKVTNA-------RVIHTV 151 (554)
Q Consensus 84 ~I~i~~GDI~~-~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~---~~~G~~~vT~~-------~IIH~V 151 (554)
+|++++|||++ .++|+|||++|+.+.+++| +.+|++++|++++++|++... +++|++.+|++ ||||++
T Consensus 1 ~i~~~~GDi~~~~~~d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~~~~~~~~~vih~~ 80 (147)
T cd02749 1 KIKVVSGDITKPLGSDAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGAKYLIHIV 80 (147)
T ss_pred CEEEEECCCCCCCCCCEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcCCCCCcCCEEEEeC
Confidence 47899999999 9999999999999988887 589999999999999988644 58999999985 999999
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCC------ChHHHHHHHHHHH
Q 008772 152 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNY------PREPAAHVAIRTV 211 (554)
Q Consensus 152 gP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~------P~~~~a~~~l~~v 211 (554)
+|+|..++..++.+.|++||++||..|.+++++|||||.||||.+|+ |++.++++|++++
T Consensus 81 ~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 81 GPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 99999876556678999999999999999999999999999999999 9999999999876
No 15
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.91 E-value=1.2e-23 Score=190.42 Aligned_cols=122 Identities=31% Similarity=0.465 Sum_probs=110.4
Q ss_pred EEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhChhH-HHHHHHhC--CCCCCCEEEccc------eEEEEcCcc
Q 008772 85 IYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGL-AEECATLG--GCRTGMAKVTNA------RVIHTVGPK 154 (554)
Q Consensus 85 I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l-~~e~~~~~--~~~~G~~~vT~~------~IIH~VgP~ 154 (554)
|++++|||+.+++|||||++|+.+.+++| +++|++++|+++ ++++++.. .+++|++++|++ +|||+++|+
T Consensus 2 i~~~~Gdi~~~~~d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Iih~~~p~ 81 (133)
T smart00506 2 LKVVKGDITKPRADAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEGGNLPAKYVIHAVGPR 81 (133)
T ss_pred eEEEeCCCCcccCCEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecCCCCCCCEEEEeCCCC
Confidence 78999999999999999999999999887 589999999996 66676543 699999999987 999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHH
Q 008772 155 YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 207 (554)
Q Consensus 155 ~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~ 207 (554)
|..++ ..+.+.|++||++||+.|.+++++|||||+||||++|+|++++++++
T Consensus 82 ~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 82 ASGHS-NEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred CCCCC-ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 98764 34578999999999999999999999999999999999999999863
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.90 E-value=1.3e-25 Score=253.55 Aligned_cols=162 Identities=23% Similarity=0.191 Sum_probs=148.5
Q ss_pred CCCEEEEEE----CCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhH---HHHHHH---------------------
Q 008772 81 INSKIYLWR----GNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGL---AEECAT--------------------- 131 (554)
Q Consensus 81 ~n~~I~i~~----GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l---~~e~~~--------------------- 131 (554)
.+.++.+++ ||||.+++|||||+||++|.+|+|+ ++|+++||+++ ++||++
T Consensus 473 ~~~~~~~~~~~~~~dit~~~~d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~~~~ 552 (725)
T PRK13341 473 EGERLAILRDRLWSDITWQRHDRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLLDGSL 552 (725)
T ss_pred cccHHHHHHHHHhccccccccceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccccccch
Confidence 467899999 9999999999999999999998885 99999999999 788865
Q ss_pred ---------------hCCCCCCCEEEc------------cc------eEEEEcCccccCCCchhHHHHHHHHHHHHHHHH
Q 008772 132 ---------------LGGCRTGMAKVT------------NA------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELL 178 (554)
Q Consensus 132 ---------------~~~~~~G~~~vT------------~~------~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a 178 (554)
+|+|++|++++| +| ||||+|||.|..+.. ...|.+||+++|.+|
T Consensus 553 ~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~---~~~l~~~~~~~L~~A 629 (725)
T PRK13341 553 EALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE---DELLYKALYSALLEA 629 (725)
T ss_pred hhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc---cchhHHHHHHHHHHH
Confidence 589999999999 77 999999999977643 358999999999999
Q ss_pred HHcCCc----------cccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHHHHHHHccccC
Q 008772 179 IENGLK----------SIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYF 246 (554)
Q Consensus 179 ~e~~~~----------SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~~yf 246 (554)
+|++++ |||||+|+||++|||.+.++++++++|.+|+..+++ ..+++|+.+++.++..|++++..+|
T Consensus 630 ee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 706 (725)
T PRK13341 630 EELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPD-YRQALATNLEEERICNLDEELTRIL 706 (725)
T ss_pred HHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCc-HHHHHhccCCHHHHHHHHHHHHHHh
Confidence 999999 999999999999999999999999999999998765 6677799999999999999988777
No 17
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.88 E-value=1.6e-22 Score=206.81 Aligned_cols=172 Identities=27% Similarity=0.439 Sum_probs=156.8
Q ss_pred hHHHHhh--cceEec-c-cCCCCCcEEEEEcccccCC-CCCHHHHHHHHHHHhhhhcCCCeEEEEEcCCCCCCCCCCHHH
Q 008772 383 LSEIAEM--KIVYRG-G-VDSEGRPVMVVVGAHFLLR-CLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGW 457 (554)
Q Consensus 383 l~~i~~~--~~~y~~-G-~D~~GrpViv~~~~~~~~~-~~d~e~ll~~vi~~Le~~~~~~fviV~D~tg~s~~~~~~~~~ 457 (554)
+.+++++ +++-.. + +|++||+|+++.+.++++. ++|-.+++.|+.+++|.++.++|.+||+|.|+.+.+.++++|
T Consensus 71 fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~~ 150 (467)
T KOG4406|consen 71 FYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQL 150 (467)
T ss_pred HHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhccceeeehhcCCcccccchHHH
Confidence 4445544 555433 3 6999999999999999874 677777999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECCHhHHhccCCCCCCCCChHHHHhhhhhcC
Q 008772 458 MRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 537 (554)
Q Consensus 458 lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~leeL~~~I~~e~L~iP~~v~~~d~~~~~ 537 (554)
+.+.|.-+++++.+|+|++|+|||+|+.+++|++++||++.|+.+||+|+++++||.++|.-++|.||+.|++||..++.
T Consensus 151 l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~lseL~~~l~l~rL~lP~~v~~~D~~~~s 230 (467)
T KOG4406|consen 151 LFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSLSELFEALKLNRLKLPPEVLKHDDKLLS 230 (467)
T ss_pred HHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehHHHHHHhhhhhhhcCChhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008772 538 GKGLIVDPRTKYVYQRP 554 (554)
Q Consensus 538 ~~~~~~~~~~~~~~~~~ 554 (554)
..-..+.|+++..+.|+
T Consensus 231 ~~~~~a~~p~~~~~pr~ 247 (467)
T KOG4406|consen 231 KAKTPAPPPEKMTPPRP 247 (467)
T ss_pred cccCCCCCcccCCCCCC
Confidence 98888888887777663
No 18
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.87 E-value=2.6e-22 Score=177.74 Aligned_cols=107 Identities=36% Similarity=0.521 Sum_probs=100.4
Q ss_pred EEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHh----CCCCCCCEEEccc------eEEEEcCccccCCCchhHHHHHHH
Q 008772 101 VNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNA------RVIHTVGPKYAVKYHTAAENALSH 169 (554)
Q Consensus 101 VNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~------~IIH~VgP~~~~~~~~~~~~~L~~ 169 (554)
||++|..+.+++| +++|++++|++++++|+++ +++++|++++|++ +|||+|+|.|+........+.|++
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~ 80 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALES 80 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeecCCCccccceEEEecceeccccccccHHHHHH
Confidence 8999999999888 5899999999999999876 6799999999988 899999999987766677899999
Q ss_pred HHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHH
Q 008772 170 CYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 207 (554)
Q Consensus 170 ~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~ 207 (554)
||++||+.|.+++++||+||+||||++|+|++++|++|
T Consensus 81 ~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 81 AYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 19
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.84 E-value=1.4e-20 Score=174.72 Aligned_cols=126 Identities=24% Similarity=0.522 Sum_probs=118.6
Q ss_pred ccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCC--------CeEEEEEcCCCCCCCCCCHHHHHHHHHHHhH
Q 008772 396 GVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQK--------PYSIVYFHSAASLQLQPDLGWMRRLQQVLGR 467 (554)
Q Consensus 396 G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~~~--------~fviV~D~tg~s~~~~~~~~~lkk~~~~l~~ 467 (554)
|.|++||||+++++++++++..+.++++++++..+|..... .+++|+|++++++.+ ++++++|++++.++.
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~~~~~lk~~~~~~~~ 92 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN-PDLSVLRKILKILQD 92 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc-ccHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999977643 499999999999865 889999999999999
Q ss_pred HhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECC--HhHHhccCCCCCC
Q 008772 468 KHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPREQL 522 (554)
Q Consensus 468 ~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~--leeL~~~I~~e~L 522 (554)
.||+|++.+||||||++++++|+++++|+++++++||+++++ .++|.++||+++|
T Consensus 93 ~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~l 149 (158)
T smart00516 93 HYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQL 149 (158)
T ss_pred HhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhC
Confidence 999999999999999999999999999999999999999987 9999999999764
No 20
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.80 E-value=3.1e-19 Score=163.74 Aligned_cols=135 Identities=27% Similarity=0.520 Sum_probs=120.7
Q ss_pred cceEecccCCCCCcEEEEEcccccC-CCCCHHHHHHHHHHHhhhhcC------CCeEEEEEcCCCCCCCC-CCHHHHHHH
Q 008772 390 KIVYRGGVDSEGRPVMVVVGAHFLL-RCLDLERFVLYVVKEFEPLIQ------KPYSIVYFHSAASLQLQ-PDLGWMRRL 461 (554)
Q Consensus 390 ~~~y~~G~D~~GrpViv~~~~~~~~-~~~d~e~ll~~vi~~Le~~~~------~~fviV~D~tg~s~~~~-~~~~~lkk~ 461 (554)
++.|.+|.|++||||++++.++.+. ...+.+++++++++.+|..+. ..+++|+|++|+++.+. +..+++|++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 5666667899999999999996554 456679999999999987765 36999999999998744 488999999
Q ss_pred HHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECC-HhHHhccCCCCCCCC
Q 008772 462 QQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR-LLQLFRYVPREQLTI 524 (554)
Q Consensus 462 ~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~-leeL~~~I~~e~L~i 524 (554)
+.+++..||+||+.+||||||++++.+|+++++|+++++++||+++++ .++|.++||+++|+.
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp~ 152 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPE 152 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCcH
Confidence 999999999999999999999999999999999999999999999998 999999999998764
No 21
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.77 E-value=1.5e-18 Score=176.00 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=129.1
Q ss_pred hHHHHhhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhc------CCCeEEEEEcCCCCCCCCCCHH
Q 008772 383 LSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLI------QKPYSIVYFHSAASLQLQPDLG 456 (554)
Q Consensus 383 l~~i~~~~~~y~~G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~------~~~fviV~D~tg~s~~~~~~~~ 456 (554)
+..-.+.|..|..|.|++||||+|++++...++..+.+.+.+++..+||..+ ++.+++++|++|++++| +++.
T Consensus 91 v~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN-~d~~ 169 (324)
T KOG1470|consen 91 VAAELETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSN-PDIK 169 (324)
T ss_pred HHHHhhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccC-CCcH
Confidence 4445678999999999999999999999888889999999999999999664 45699999999999985 7899
Q ss_pred HHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECCHhHHhccCCCCCC
Q 008772 457 WMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQL 522 (554)
Q Consensus 457 ~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~leeL~~~I~~e~L 522 (554)
+++-++.+|+.+||+||..++++|+||+|+.+|++++||+.++++.||+|+.+..+|.++|++++|
T Consensus 170 ~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~l 235 (324)
T KOG1470|consen 170 FLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPKDDLSEYFDESQL 235 (324)
T ss_pred HHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecChhHHHhhCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999984
No 22
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.76 E-value=8.3e-19 Score=162.91 Aligned_cols=139 Identities=20% Similarity=0.328 Sum_probs=113.3
Q ss_pred HHHhhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcC--------CCeEEEEEcCCCCCCCCC--C
Q 008772 385 EIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQ--------KPYSIVYFHSAASLQLQP--D 454 (554)
Q Consensus 385 ~i~~~~~~y~~G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~~--------~~fviV~D~tg~s~~~~~--~ 454 (554)
++.+.+++|..|+|++||||++++.+++++..+..++++++++..+|..+. ..+++|+|++|+++.+.. .
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~ 81 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWP 81 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHH
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccch
Confidence 567889999999999999999999999999988899999999999887651 249999999999976322 2
Q ss_pred HHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECCH---hHHhccCCCCCCC
Q 008772 455 LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRL---LQLFRYVPREQLT 523 (554)
Q Consensus 455 ~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~l---eeL~~~I~~e~L~ 523 (554)
.+.++.+.++++..||+|++.+||+|+|++++.+|+++++|+++++++||+++++. ++|.++|++++|+
T Consensus 82 ~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP 153 (159)
T PF00650_consen 82 ISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLP 153 (159)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSB
T ss_pred hhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCc
Confidence 89999999999999999999999999999999999999999999999999999543 5799999998765
No 23
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.75 E-value=7.5e-18 Score=154.47 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=104.9
Q ss_pred EEEEEECCCcce-eccEEEEcCCcCCCCCCC-HHHHHHh---hChhHHHHHHHhCCCCCCCEEE-ccc------eEEEEc
Q 008772 84 KIYLWRGNPWNL-EVDTVVNSTNENLDEAHS-SPGLHAA---AGPGLAEECATLGGCRTGMAKV-TNA------RVIHTV 151 (554)
Q Consensus 84 ~I~i~~GDI~~~-~vDaIVNsaN~~l~~~~g-~~aI~~~---aG~~l~~e~~~~~~~~~G~~~v-T~~------~IIH~V 151 (554)
+|.+++|||++. ++|+|||++|..+.+|+| +.+|.++ +..++++.|++.+ ...|++.+ +.+ +|+|++
T Consensus 1 ~i~~v~GDi~~~~~~d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~I~~~~ 79 (140)
T cd02901 1 MITYVKGDLLHAPEAAALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKKE-LLLGGVAVLERGSSLVSRYIYNLP 79 (140)
T ss_pred CeEEEcCccccCCCCCEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhcC-CCCCcEEEEecCCCCCceEEEEee
Confidence 378999999999 999999999999999887 4788886 3346666777654 44666555 433 899999
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHH
Q 008772 152 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 212 (554)
Q Consensus 152 gP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~ 212 (554)
+|.|.... ...+.|++|++++++.|.+++++|||||.||||.+|+|.+++++++.+.+.
T Consensus 80 t~~~~~~~--~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~ 138 (140)
T cd02901 80 TKVHYGPK--SRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA 138 (140)
T ss_pred ccCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 99876533 235799999999999999999999999999999999999999999887764
No 24
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.46 E-value=2.1e-13 Score=141.73 Aligned_cols=132 Identities=22% Similarity=0.300 Sum_probs=109.1
Q ss_pred eEecccCCCCCcEEEEEcccccCCC----CCHHHHHHHHHHHhh--------hhc------CCCeEEEEEcCCCCCC--C
Q 008772 392 VYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFE--------PLI------QKPYSIVYFHSAASLQ--L 451 (554)
Q Consensus 392 ~y~~G~D~~GrpViv~~~~~~~~~~----~d~e~ll~~vi~~Le--------~~~------~~~fviV~D~tg~s~~--~ 451 (554)
....|+|+.|+||++-..+..+.+. ....+.+++.+.-++ ... ...++.|+|+.|+++. .
T Consensus 97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~ 176 (317)
T KOG1471|consen 97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL 176 (317)
T ss_pred ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence 3456899999999999999887653 344444444443332 111 2349999999999987 4
Q ss_pred CCCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEE-E-ECCHhHHhccCCCCCCC
Q 008772 452 QPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVV-Y-VDRLLQLFRYVPREQLT 523 (554)
Q Consensus 452 ~~~~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~-~-~~~leeL~~~I~~e~L~ 523 (554)
.+.++.++++..+++++||++++++||||+|++|.++|++++|||++++++||+ + .++.++|+++|+++.|+
T Consensus 177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP 250 (317)
T KOG1471|consen 177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLP 250 (317)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCc
Confidence 578999999999999999999999999999999999999999999999999999 3 36899999999998774
No 25
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.30 E-value=3.7e-11 Score=111.99 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=100.2
Q ss_pred EEEEEECCCcce---eccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHh---CCCCCCCEEE-ccc------eEEE
Q 008772 84 KIYLWRGNPWNL---EVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL---GGCRTGMAKV-TNA------RVIH 149 (554)
Q Consensus 84 ~I~i~~GDI~~~---~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~---~~~~~G~~~v-T~~------~IIH 149 (554)
.|.+++|||++. ..++|||++|....+|+|. .+|.++. |++.++.++. +..+.|++.+ |.+ +|+|
T Consensus 2 ~i~~v~GDl~~~~~~~~~~i~h~~N~~g~mG~GIA~~~k~~~-P~~~~~y~~~~~~~~~~lG~~~~~~~~~~~~~~~I~n 80 (154)
T PHA02595 2 IVDYIKGDIVALFLQGKGNIAHGCNCFHTMGSGIAGQLAKAF-PQILEADKLTTEGDVEKLGTFSVWEKYVGGHKAYCFN 80 (154)
T ss_pred eEEEECCcccccccCCCceEEEeeCCCCcCChHHHHHHHHHc-ChHHHHHHHHhcCCccccceEEEEEeeccCCCEEEEE
Confidence 478899999877 5669999999999999985 6777776 6777777654 4577899866 321 8999
Q ss_pred EcCccccCCCchhHHHHHHHHHHHHHHHHHHcCC-ccccccccccCCCCCChHHHHHHHHHH
Q 008772 150 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGL-KSIAMGCIYTEAKNYPREPAAHVAIRT 210 (554)
Q Consensus 150 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~-~SIA~P~i~tG~~g~P~~~~a~~~l~~ 210 (554)
.++- |+.+... ...+|++|+++..+.+.++++ .|||||.||||.+|.|.+.+..++.+.
T Consensus 81 l~tq-~~~~~~~-~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~ 140 (154)
T PHA02595 81 LYTQ-FDPGPNL-EYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA 140 (154)
T ss_pred Eecc-CCCCCCC-cHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence 9775 7655332 246799999999999999998 999999999999999999988887653
No 26
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.26 E-value=4.4e-06 Score=83.77 Aligned_cols=134 Identities=14% Similarity=0.125 Sum_probs=81.0
Q ss_pred CEEEEEECCCcce-------------eccEEEEcCCcCCCCCCCH-HHHHHhhChh-HHHHHHH-hC--CCCCCCEEEcc
Q 008772 83 SKIYLWRGNPWNL-------------EVDTVVNSTNENLDEAHSS-PGLHAAAGPG-LAEECAT-LG--GCRTGMAKVTN 144 (554)
Q Consensus 83 ~~I~i~~GDI~~~-------------~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~-l~~e~~~-~~--~~~~G~~~vT~ 144 (554)
..+.++.|++..+ .+||||.|||+..-+|||- .+|.++-|.+ ++.-+++ ++ -.++|.+-+..
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l~~~y~pvGs~tvId 121 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQLGERYHPVGSCTVID 121 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHTTTS---TT--EEEE
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHHhccccCCCeeEEEE
Confidence 3488888887643 3889999999999999985 7888876654 4444554 22 25677655432
Q ss_pred c----------------eEEEEcC---cc---ccCCCc-hhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChH
Q 008772 145 A----------------RVIHTVG---PK---YAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 201 (554)
Q Consensus 145 ~----------------~IIH~Vg---P~---~~~~~~-~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~ 201 (554)
- ||||+-+ |. |..... ...-+.+.++..|+|..+. ..+.+|.+|.||||.+|.|++
T Consensus 122 L~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~ 200 (280)
T PF14519_consen 122 LPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPE 200 (280)
T ss_dssp GGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HH
T ss_pred CchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHH
Confidence 1 8999833 33 322110 1123567788888887764 569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008772 202 PAAHVAIRTVRRFLEK 217 (554)
Q Consensus 202 ~~a~~~l~~v~~fl~~ 217 (554)
.+|+.|+-+++-|...
T Consensus 201 ~sAk~M~fAl~l~~l~ 216 (280)
T PF14519_consen 201 ISAKQMAFALRLYNLQ 216 (280)
T ss_dssp HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999999854
No 27
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=97.97 E-value=0.00015 Score=67.35 Aligned_cols=121 Identities=9% Similarity=0.010 Sum_probs=90.2
Q ss_pred EEEEECCCcceecc-----EEEEcCCcCCCCC-CC-HHHHHHhhChhHHHH---HHHhCCCCCCCEEEcc---------c
Q 008772 85 IYLWRGNPWNLEVD-----TVVNSTNENLDEA-HS-SPGLHAAAGPGLAEE---CATLGGCRTGMAKVTN---------A 145 (554)
Q Consensus 85 I~i~~GDI~~~~vD-----aIVNsaN~~l~~~-~g-~~aI~~~aG~~l~~e---~~~~~~~~~G~~~vT~---------~ 145 (554)
|+.++||++....+ +||+..|..-..| || +.+|.+.- |+..+. |.+.+.+..|++.+.+ +
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~~~dl~LG~~~li~v~~~~~~~~~ 80 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGKMKDLHLGDLHLFPIDDKNSRLKG 80 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHhcCCCccccEEEEEeccccCCCCC
Confidence 78899999998655 9999999998877 46 47777655 544443 4445667788887663 1
Q ss_pred --eEEEEcCccccCC--CchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHH
Q 008772 146 --RVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 207 (554)
Q Consensus 146 --~IIH~VgP~~~~~--~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~ 207 (554)
+|.-.++..+..+ +..-+...|.+|+.++-..|.+ +-.||.||=||+|.+|.+.+..-+++
T Consensus 81 ~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li 145 (152)
T cd03331 81 PDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLI 145 (152)
T ss_pred CeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 7888888875443 2233467888998888888765 45889999999999999999765554
No 28
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=97.75 E-value=1.7e-05 Score=93.99 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=154.7
Q ss_pred cCCCCCCCCCchHhhH--------------HHHHHHHH---hcCcChHHHHhhcceEecccCCCCCcEEEEEcccccCCC
Q 008772 354 FGDLGGPPLSAAEEYS--------------LHSRYLAK---ANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRC 416 (554)
Q Consensus 354 l~~lg~p~~~~~~e~~--------------~~~~~l~~---a~~~dl~~i~~~~~~y~~G~D~~GrpViv~~~~~~~~~~ 416 (554)
++..|.|++....... ..++.+++ .+++.+.-+++.-.+|+.| .+.|.|+++++.+++-.+.
T Consensus 1509 ~a~rglpEH~~iad~s~v~s~~~~i~L~S~d~E~ii~~~~lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~~ 1587 (2724)
T KOG1826|consen 1509 LAYRGLPEHAPIADGSFVFSRFKEIALVSPDSENIIREHHLHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLKE 1587 (2724)
T ss_pred HHhhCCCCCCccCCCCcceehcccccccCccHHHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHhh
Confidence 5677888664432211 23455554 3466688888888999999 9999999999999988888
Q ss_pred CCHHHHHHHHHHHhhhhcCCCeEEEEEcCCCCCCCCCCHHHHHH-HHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhc
Q 008772 417 LDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRR-LQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLL 495 (554)
Q Consensus 417 ~d~e~ll~~vi~~Le~~~~~~fviV~D~tg~s~~~~~~~~~lkk-~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~F 495 (554)
.+-+.++++...++.+..+-++.++.|.|....++.+-.++++. ++.+.+....+|..+++.+|++.|.|....+....
T Consensus 1588 ~s~~il~~l~~L~~kp~~hf~~evreD~T~~~~d~sfltsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~l~dri 1667 (2724)
T KOG1826|consen 1588 CSDDILIFLVELCLKPKVHFPGEVREDPTPIEFDYSFLTSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTKLHDRI 1667 (2724)
T ss_pred cCcHHHHHHHHHHcCccccCcceeeecCCcCCccHHHHHHHHhhhheeechhhhhhcccccccccchHHHHHHHHHHHHH
Confidence 88888999999999999999999999999998877777777766 88899999999999999999999999999999888
Q ss_pred ccc-cccceEEEECCHhHHhccCCCCCCCCChHHHHhhhhhcC
Q 008772 496 VDN-VVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 537 (554)
Q Consensus 496 ls~-K~~~KI~~~~~leeL~~~I~~e~L~iP~~v~~~d~~~~~ 537 (554)
+.. |-.++..|.+..-.|.++|+.++..+|..+.-.++++.-
T Consensus 1668 L~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkv 1710 (2724)
T KOG1826|consen 1668 LGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKV 1710 (2724)
T ss_pred HhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccc
Confidence 877 777889999999999999999999999999988887653
No 29
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.67 E-value=0.0012 Score=66.85 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=99.9
Q ss_pred CCEEEEEECCCcce----------eccEEEEcCCcCCCCCC---CH----HHHHHhhC--hhHH--HHH---HH--hCCC
Q 008772 82 NSKIYLWRGNPWNL----------EVDTVVNSTNENLDEAH---SS----PGLHAAAG--PGLA--EEC---AT--LGGC 135 (554)
Q Consensus 82 n~~I~i~~GDI~~~----------~vDaIVNsaN~~l~~~~---g~----~aI~~~aG--~~l~--~e~---~~--~~~~ 135 (554)
..+|.++.+|-.+. .-=+|.|.||..--.|| |+ .+|.+..+ +.|. .+. ++ -.++
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~r~~~~pl 134 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEFHRHQRSPL 134 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhhhcccCCCC
Confidence 46799999995321 12389999998766554 32 24555443 2221 111 11 0123
Q ss_pred CCCCEEEccc------------------eEEEEcCccccC-----CC-chhHHHHHHHHHHHHHHHHHHcCCcccccccc
Q 008772 136 RTGMAKVTNA------------------RVIHTVGPKYAV-----KY-HTAAENALSHCYRSCLELLIENGLKSIAMGCI 191 (554)
Q Consensus 136 ~~G~~~vT~~------------------~IIH~VgP~~~~-----~~-~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i 191 (554)
.+-.++.|+. -||-+..|.+.. +. ..+....|++-++.+|..|..+|.+++.+.+.
T Consensus 135 ~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~ 214 (266)
T TIGR02452 135 YSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAW 214 (266)
T ss_pred CCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 3334444443 366666777641 11 23446789999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChh
Q 008772 192 YTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTAS 233 (554)
Q Consensus 192 ~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~~ 233 (554)
|||.|+-|+.+.|+...+.+.. -......++.|+|.+.+..
T Consensus 215 GCG~f~N~p~~VA~~f~evL~~-~~ef~g~F~~VvFAI~d~~ 255 (266)
T TIGR02452 215 GCGVFGNDPAEVAKIFHDLLSP-GGIFKGRIKEVVFAILDRH 255 (266)
T ss_pred cccccCCCHHHHHHHHHHHhcc-CccccCceeEEEEEEeCCC
Confidence 9999999999999998777751 0122357999999999743
No 30
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=0.097 Score=50.67 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCh--hhHHHHH
Q 008772 162 AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTA--SDTEIYK 239 (554)
Q Consensus 162 ~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~--~~~~~y~ 239 (554)
+..+.|..-.+.+|.+|..++.+.+.+-+-|||.|+-.+..+|+++.+.+..-.++.+ .++.|+|.+.|. ....+|+
T Consensus 197 ~i~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g-~fkhv~FavlD~n~~~~~iFr 275 (285)
T COG4295 197 EIREALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLG-DFKHVVFAVLDRNMTIVNIFR 275 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhc-ccceEEEEEecCCchHHHHHH
Confidence 3457899999999999999999999999999999999999999999888776655543 688999999974 5567888
Q ss_pred HHccc
Q 008772 240 RLLPL 244 (554)
Q Consensus 240 ~~l~~ 244 (554)
+.+..
T Consensus 276 ~ele~ 280 (285)
T COG4295 276 KELEY 280 (285)
T ss_pred HHHHh
Confidence 87763
No 31
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=95.04 E-value=0.12 Score=56.73 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=80.4
Q ss_pred CCCCCEEEccc-------eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCCh-----HH
Q 008772 135 CRTGMAKVTNA-------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPR-----EP 202 (554)
Q Consensus 135 ~~~G~~~vT~~-------~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~-----~~ 202 (554)
+.+|++.||.- .|+|.|.-.-.....-.+..-+-..+||+|+.|..+++.+|.+|.+-+....-.. -.
T Consensus 372 l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~~ 451 (510)
T PF10154_consen 372 LKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCLK 451 (510)
T ss_pred CCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHHH
Confidence 68899999975 7899986432111111234568889999999999999999999999887543221 13
Q ss_pred HHHHHHHHHHHHHHHcC----CCccEEEEEecChh---hHHHHHHHccccCC
Q 008772 203 AAHVAIRTVRRFLEKQK----DKISAVVFCTTTAS---DTEIYKRLLPLYFP 247 (554)
Q Consensus 203 ~a~~~l~~v~~fl~~~~----~~i~~V~fv~~~~~---~~~~y~~~l~~yfp 247 (554)
=|+..++.|+-|+-... .....|.|++-..- .+..+..+++..|.
T Consensus 452 Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 452 RAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 47888999999998743 24578999987654 34445566777664
No 32
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=36.54 E-value=78 Score=40.35 Aligned_cols=125 Identities=11% Similarity=0.128 Sum_probs=76.7
Q ss_pred cCCCCCCCCCc--------h---HhhHHHHHHHHHhcCcChHHHHhhcceEecccCCCCCcEEEEEcccccCCCCCHHHH
Q 008772 354 FGDLGGPPLSA--------A---EEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERF 422 (554)
Q Consensus 354 l~~lg~p~~~~--------~---~e~~~~~~~l~~a~~~dl~~i~~~~~~y~~G~D~~GrpViv~~~~~~~~~~~d~e~l 422 (554)
|++||+|...- + +.+...-++|.++..+|++.-.+.+....-.....|-+++.+...+..-.++.++-+
T Consensus 1668 L~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkvsnalk~s~~etkvsi~ig~~alt~Tnae~tkvl~~Sv 1747 (2724)
T KOG1826|consen 1668 LGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKVSNALKPSVHETKVSIGIGIIALTMTNAEDTKVLIDSV 1747 (2724)
T ss_pred HhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccccccccchhhhhhhhcccCceEEEEeccccccchhhhH
Confidence 69999993211 1 122222346777777777663333333333344578788888777776667777766
Q ss_pred HHHHHHHhhhhcCCCeEEEEEcCCCCCCCCCCHHHHHHHHHHHhHHhhcccceEEEEcC
Q 008772 423 VLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHP 481 (554)
Q Consensus 423 l~~vi~~Le~~~~~~fviV~D~tg~s~~~~~~~~~lkk~~~~l~~~~p~rLk~iyiVnp 481 (554)
++-.++... .-+-++++|++.|+..-..--.++.-++..+|+-.+.++...|-.|.
T Consensus 1748 ~~kdl~~~a---eik~~cliD~tqFtl~ian~~~~ls~~h~~c~~i~qs~~h~~~~~~v 1803 (2724)
T KOG1826|consen 1748 AYKDLQIYA---EIKHCCLIDCTQFTLGIANMRKFLSLVHGLCPEIAQSNCHGCYYFNV 1803 (2724)
T ss_pred HHHHHHHHh---hcceEEEEEcCeeeeccccccchhHHHHhhhHHHhhhheeeeeeEec
Confidence 665555433 34567888999997763223334455677777777788877776554
No 33
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=36.12 E-value=75 Score=28.59 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhH-Hhhcccc-eEEEEcCChhhHHHHHHh-----hhcccccccceEEEECCHhHHhccC
Q 008772 455 LGWMRRLQQVLGR-KHQRNLH-AIYVLHPTFHLKATIFTL-----QLLVDNVVWKKVVYVDRLLQLFRYV 517 (554)
Q Consensus 455 ~~~lkk~~~~l~~-~~p~rLk-~iyiVnp~~~~k~~~~~~-----~~Fls~K~~~KI~~~~~leeL~~~I 517 (554)
..-|-.++..+.- .+...-+ -+.++|.+-+.+-++.++ ..|+++.-...++++++.+++.++|
T Consensus 64 ~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 64 IGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 3445556666553 3333445 799999875556666655 5688888888999999999997764
No 34
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=35.43 E-value=1.7e+02 Score=24.56 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHhhhhc--CCCeEEEEEcC-CCCCCCCCCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHh
Q 008772 416 CLDLERFVLYVVKEFEPLI--QKPYSIVYFHS-AASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTL 492 (554)
Q Consensus 416 ~~d~e~ll~~vi~~Le~~~--~~~fviV~D~t-g~s~~~~~~~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~ 492 (554)
.++.+++-. +...++... .+++.+++|++ ++.. +++.-+.....+. ..+..+++++=+|-.+.|.+.+.+++
T Consensus 10 ~~t~ed~~~-~~~~~~~~~~~~~~~~ll~d~~~~~~~---~~~~a~~~~~~~~-~~~~~~~~r~AvV~~~~~~~~~~~~~ 84 (109)
T PF11964_consen 10 KLTEEDYKE-LLPALEELIADHGKIRLLVDLRRDFEG---WSPEARWEDAKFG-LKHLKHFRRIAVVGDSEWIRMIANFF 84 (109)
T ss_dssp EE-HHHHHH-HHHHHHHHHTTSSSEEEEEEEC-CEEE---EHHHHHHHHHHHH-CCCCGGEEEEEEE-SSCCCHHHHHHH
T ss_pred eeCHHHHHH-HHHHHHHHHhcCCceEEEEEecCccCC---CCHHHHHHHHHhc-hhhhcccCEEEEEECcHHHHHHHHHH
Confidence 456666555 444454444 45699999988 7632 3333333333333 34778889999999999999999999
Q ss_pred hhcccccccceEEEE--CCHhH
Q 008772 493 QLLVDNVVWKKVVYV--DRLLQ 512 (554)
Q Consensus 493 ~~Fls~K~~~KI~~~--~~lee 512 (554)
..| ...-+.+. ++.++
T Consensus 85 ~~~----~~~~~~~F~~~~~~~ 102 (109)
T PF11964_consen 85 AAF----PPIEVRYFPPDEEEE 102 (109)
T ss_dssp HHH-----SSEEEEE--SSHHH
T ss_pred Hhc----CCCceEEECCCCHHH
Confidence 886 33345555 65554
No 35
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=27.84 E-value=1.4e+02 Score=25.23 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCC---ccEEEEEecChhhHHHHHHHccccCC
Q 008772 199 PREPAAHVAIRTVRRFLEKQKDK---ISAVVFCTTTASDTEIYKRLLPLYFP 247 (554)
Q Consensus 199 P~~~~a~~~l~~v~~fl~~~~~~---i~~V~fv~~~~~~~~~y~~~l~~yfp 247 (554)
..+.=++.+++.|+.-|+..+.+ +-++.+.+.+.+++..+.+....||+
T Consensus 23 d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 23 TVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 35566777888999999987744 44455555667889888888889998
No 36
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=21.88 E-value=3.1e+02 Score=23.84 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCCCC
Q 008772 199 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPRD 249 (554)
Q Consensus 199 P~~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr~ 249 (554)
..++-++.+++.+.+-|+..+. .+-++.+.+.+..++..+.+....||+..
T Consensus 40 ~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~~f~~~ 93 (121)
T PF01042_consen 40 DIEEQTRQALDNIERILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKEFFPDH 93 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHHHSTSS
T ss_pred CHHHHHHHHHHhhhhhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHHHhccc
Confidence 3455556666777777776653 34455566677788999999999999876
No 37
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=21.79 E-value=99 Score=26.68 Aligned_cols=40 Identities=25% Similarity=0.153 Sum_probs=31.1
Q ss_pred eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccc
Q 008772 146 RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGC 190 (554)
Q Consensus 146 ~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~ 190 (554)
.|.||..|.|-.+..- =...+..+|+.|.+.|++-|.+|.
T Consensus 41 ~i~HT~V~d~lrGqGi-----a~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 41 IIDHTYVPDELRGQGI-----AQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEecCcCCHHHcCCcH-----HHHHHHHHHHHHHHcCCeEcccch
Confidence 8999999988665332 234467889999999999998886
No 38
>PHA00684 hypothetical protein
Probab=20.95 E-value=1.7e+02 Score=26.36 Aligned_cols=45 Identities=2% Similarity=-0.129 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHH
Q 008772 164 ENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAI 208 (554)
Q Consensus 164 ~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l 208 (554)
...++..+..-+..|.++--.+.-+..||||+.||..++.|....
T Consensus 55 l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~ 99 (128)
T PHA00684 55 LPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFR 99 (128)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHh
Confidence 457899999999999999988899999999999999998877654
No 39
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.60 E-value=1.4e+02 Score=25.59 Aligned_cols=65 Identities=5% Similarity=-0.035 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCCCCCCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceE---EEECCHhH
Q 008772 438 YSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKV---VYVDRLLQ 512 (554)
Q Consensus 438 fviV~D~tg~s~~~~~~~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI---~~~~~lee 512 (554)
-.+|+|+++++.-..-.+..|.++.+ .+..+=..++|++++...+..+... .+.+.+ .++.++++
T Consensus 49 ~~vIlD~s~v~~iDssgi~~L~~~~~----~~~~~g~~~~l~~~~~~v~~~l~~~------~~~~~~~~~~~~~s~~~ 116 (117)
T PF01740_consen 49 KNVILDMSGVSFIDSSGIQALVDIIK----ELRRRGVQLVLVGLNPDVRRILERS------GLIDFIPEDQIFPSVDD 116 (117)
T ss_dssp SEEEEEETTESEESHHHHHHHHHHHH----HHHHTTCEEEEESHHHHHHHHHHHT------TGHHHSCGGEEESSHHH
T ss_pred eEEEEEEEeCCcCCHHHHHHHHHHHH----HHHHCCCEEEEEECCHHHHHHHHHc------CCChhcCCCCccCCHHH
Confidence 68999999986432223444444443 4446778899999988776664333 333334 56665554
Done!