Query 008772
Match_columns 554
No_of_seqs 390 out of 1904
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x47_A Macro domain-containing 100.0 1.1E-46 3.6E-51 371.5 18.7 202 20-249 27-235 (235)
2 3q6z_A Poly [ADP-ribose] polym 100.0 2.5E-41 8.5E-46 328.5 17.4 176 71-246 25-213 (214)
3 1spv_A Putative polyprotein/ph 100.0 1E-40 3.5E-45 318.2 20.4 168 82-251 2-180 (184)
4 1yd9_A Core histone macro-H2A. 100.0 5.4E-40 1.8E-44 315.2 19.1 172 73-247 9-192 (193)
5 2xd7_A Core histone macro-H2A. 100.0 1.4E-39 4.7E-44 312.5 19.6 168 74-244 10-192 (193)
6 3q71_A Poly [ADP-ribose] polym 100.0 1.3E-39 4.5E-44 317.1 19.7 171 78-249 34-218 (221)
7 4abl_A Poly [ADP-ribose] polym 100.0 5.3E-39 1.8E-43 305.1 17.2 153 81-244 20-180 (183)
8 3gpg_A NSP3, non-structural pr 100.0 3.9E-38 1.3E-42 294.3 12.2 152 84-244 11-166 (168)
9 3kh6_A Poly [ADP-ribose] polym 100.0 5.5E-37 1.9E-41 294.4 18.3 153 81-244 31-191 (199)
10 3gqe_A Non-structural protein 100.0 8.8E-37 3E-41 285.4 14.9 154 81-243 2-159 (168)
11 2acf_A Replicase polyprotein 1 100.0 2.8E-37 9.7E-42 292.8 11.4 159 71-251 8-180 (182)
12 3eti_A X (ADRP) domain, macro 100.0 6.6E-37 2.3E-41 286.5 12.6 145 82-243 9-167 (168)
13 2dx6_A Hypothetical protein TT 100.0 2.7E-36 9.3E-41 281.4 16.4 150 84-242 3-159 (159)
14 1vhu_A Hypothetical protein AF 100.0 3.5E-36 1.2E-40 292.4 15.5 159 82-247 20-202 (211)
15 3ejg_A Non-structural protein 100.0 1.8E-36 6E-41 288.2 12.9 145 81-243 36-192 (193)
16 2vri_A Non-structural protein 100.0 4E-35 1.4E-39 276.7 10.5 154 68-243 6-171 (174)
17 3ejf_A Non-structural protein 100.0 4.7E-33 1.6E-37 261.4 13.1 149 77-242 8-175 (176)
18 4gua_A Non-structural polyprot 100.0 2.8E-31 9.7E-36 279.7 15.3 152 83-243 344-499 (670)
19 1njr_A 32.1 kDa protein in ADH 100.0 4.4E-32 1.5E-36 273.0 7.8 167 82-257 44-254 (284)
20 3pg7_A Neurofibromin; SEC lipi 100.0 2.1E-30 7.1E-35 259.2 12.2 157 380-536 1-158 (256)
21 3peg_A Neurofibromin; SEC14 do 99.9 5.1E-27 1.7E-31 238.0 9.8 162 368-529 5-170 (290)
22 2jyc_A Uncharacterized protein 99.9 2.4E-24 8.3E-29 200.4 13.6 126 82-213 19-150 (160)
23 2eee_A Uncharacterized protein 99.9 2.1E-24 7.3E-29 198.7 12.3 125 82-212 8-138 (149)
24 2fg1_A Conserved hypothetical 99.9 1.7E-22 5.9E-27 187.8 11.7 128 83-212 4-147 (158)
25 3hx3_A Retinaldehyde-binding p 99.8 2.5E-21 8.5E-26 199.6 9.4 141 383-523 135-285 (316)
26 1r5l_A Alpha-TTP, protein (alp 99.8 2.2E-20 7.6E-25 186.7 12.6 141 382-523 75-226 (262)
27 1aua_A Phosphatidylinositol tr 99.8 2.4E-19 8.2E-24 182.8 11.3 138 386-523 100-258 (296)
28 3q8g_A CRAL-TRIO domain-contai 99.8 4.5E-19 1.5E-23 183.0 10.6 138 386-523 115-273 (320)
29 1olm_A SEC14-like protein 2; l 99.7 3.6E-18 1.2E-22 181.6 12.5 130 394-523 88-238 (403)
30 3sig_A PArg, poly(ADP-ribose) 98.8 1.6E-08 5.4E-13 101.0 9.1 161 82-243 64-275 (277)
31 2vg0_A Short-chain Z-isoprenyl 30.3 77 0.0026 30.1 6.0 51 166-217 31-81 (227)
32 3l7q_A Putative translation in 28.5 1.4E+02 0.0048 25.1 6.9 50 199-248 45-97 (125)
33 3k0t_A Endoribonuclease L-PSP, 28.0 1.4E+02 0.0048 26.0 7.0 49 199-247 63-114 (143)
34 2q3l_A Uncharacterized protein 27.0 1E+02 0.0036 26.0 5.8 114 389-512 7-120 (126)
35 3kjj_A NMB1025 protein; YJGF p 24.5 1.5E+02 0.0051 25.3 6.3 50 199-248 42-94 (128)
36 1qd9_A Purine regulatory prote 24.3 1.7E+02 0.0059 24.5 6.7 50 199-248 44-96 (124)
37 3k12_A Uncharacterized protein 23.2 1.6E+02 0.0056 24.6 6.3 49 200-248 35-86 (122)
38 3r0p_A L-PSP putative endoribo 21.7 1.9E+02 0.0065 24.3 6.5 48 200-247 49-99 (127)
39 3lyb_A Putative endoribonuclea 21.2 72 0.0025 28.7 3.8 48 201-248 70-120 (165)
40 1sbo_A Putative anti-sigma fac 20.8 2.6E+02 0.0089 21.8 7.0 84 400-492 11-95 (110)
41 3gtz_A Putative translation in 20.7 1.6E+02 0.0055 24.8 5.8 49 200-248 37-88 (124)
42 1qu9_A YJGF protein; structura 20.6 1.3E+02 0.0043 25.5 5.1 49 199-247 45-96 (128)
43 1c76_A Staphylokinase, SAK; be 20.6 1.6E+02 0.0055 25.3 5.4 54 394-447 29-85 (136)
44 1qah_A Perchloric acid soluble 20.1 2.4E+02 0.0082 24.0 6.9 49 200-248 50-101 (136)
No 1
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=371.53 Aligned_cols=202 Identities=38% Similarity=0.649 Sum_probs=182.4
Q ss_pred CceeecCCCCCCchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCEEEEEECCCcceeccE
Q 008772 20 DSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLASSSGAESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDT 99 (554)
Q Consensus 20 ~~~v~~~~l~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~n~~I~i~~GDI~~~~vDa 99 (554)
+++|++++||+|++..... . +....++|+++..+|.+|.|++|||+++++||
T Consensus 27 ~~~v~~~~ip~w~~~~~~~-------~---------------------~~~~~~~~~~~~~~~~~i~i~~GDIt~~~vDa 78 (235)
T 2x47_A 27 KDFVRLKKIPTWKEMAKGV-------A---------------------VKVEEPRYKKDKQLNEKISLLRSDITKLEVDA 78 (235)
T ss_dssp SCCEEGGGSCCHHHHHTTC-------C---------------------------CCCCCHHHHTTEEEEESCGGGEESSE
T ss_pred cCccchhhCCcHHHhcccc-------C---------------------ccccCCCCCcccccCCEEEEEeCccCcccCCE
Confidence 4799999999999855410 0 01124578899999999999999999999999
Q ss_pred EEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHhCCCCCCCEEEccc------eEEEEcCccccCCCchhHHHHHHHHHH
Q 008772 100 VVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLGGCRTGMAKVTNA------RVIHTVGPKYAVKYHTAAENALSHCYR 172 (554)
Q Consensus 100 IVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~------~IIH~VgP~~~~~~~~~~~~~L~~~y~ 172 (554)
|||+||+.|.+|||+ +||+++||++|++||+++++|++|++++|+| ||||+|||.|+.+......+.|++||+
T Consensus 79 IVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~ 158 (235)
T 2x47_A 79 IVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYL 158 (235)
T ss_dssp EEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSCCCCBTCEEEEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHH
T ss_pred EEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhCCCCCCceEEecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHH
Confidence 999999999998885 9999999999999999999999999999998 999999999987555566789999999
Q ss_pred HHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHHHHHHHccccCCCC
Q 008772 173 SCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRD 249 (554)
Q Consensus 173 ~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfpr~ 249 (554)
+||++|.+++++|||||+||||++|||++++|++|++++++|++++++++++|+||++++.++++|+++|+.||||.
T Consensus 159 ~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~V~fv~f~~~~~~~y~~~l~~~fp~~ 235 (235)
T 2x47_A 159 SSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRLPHYFPVA 235 (235)
T ss_dssp HHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEEECSHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999887779999999999999999999999999984
No 2
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=328.52 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=162.8
Q ss_pred CCCCCcccCCCCCEEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHh----CCCCCCCEEEccc
Q 008772 71 MVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL----GGCRTGMAKVTNA 145 (554)
Q Consensus 71 ~~~~f~~~~~~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~ 145 (554)
....|.+....+.+|.+|+|||+++++|||||+||++|.++||+ +||+++||++|++||+++ ++|++|++++|+|
T Consensus 25 ~~~~~~~~~~~g~~I~v~~GDIt~~~vDaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~ 104 (214)
T 3q6z_A 25 QKCFSRTVLAPGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKA 104 (214)
T ss_dssp --CCEEEEEETTEEEEEEECCTTSCSSSEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEEC
T ss_pred CeeEEEEEcCCCcEEEEEecccccCcCCEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEcC
Confidence 34567777777899999999999999999999999999998875 899999999999999886 7999999999998
Q ss_pred ------eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcC
Q 008772 146 ------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK 219 (554)
Q Consensus 146 ------~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~ 219 (554)
||||+|||.|+.+...++.+.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|+++++
T Consensus 105 ~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~~ 184 (214)
T 3q6z_A 105 GKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKK 184 (214)
T ss_dssp TTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998876555678999999999999999999999999999999999999999999999999998874
Q ss_pred --CCccEEEEEecChhhHHHHHHHccccC
Q 008772 220 --DKISAVVFCTTTASDTEIYKRLLPLYF 246 (554)
Q Consensus 220 --~~i~~V~fv~~~~~~~~~y~~~l~~yf 246 (554)
+++++|+||+++++++++|++.++.||
T Consensus 185 ~~~~l~~V~fv~~d~~~~~~f~~~l~~~f 213 (214)
T 3q6z_A 185 DGHCLKEIYLVDVSEKTVEAFAEAVKTVF 213 (214)
T ss_dssp --CCCCEEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHhh
Confidence 689999999999999999999999988
No 3
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=1e-40 Score=318.16 Aligned_cols=168 Identities=32% Similarity=0.529 Sum_probs=152.5
Q ss_pred CCEEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHh----CCCCCCCEEEccc------eEEEE
Q 008772 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL----GGCRTGMAKVTNA------RVIHT 150 (554)
Q Consensus 82 n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~------~IIH~ 150 (554)
|.+|.+++|||+++++|||||+||+.|.+|||+ +||+++||++|++||+++ ++|++|++++|+| ||||+
T Consensus 2 ~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~~~~L~~k~VIH~ 81 (184)
T 1spv_A 2 KTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHT 81 (184)
T ss_dssp -CCEEEEESCGGGCCCSEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEECCTTSSSSEEEEE
T ss_pred CCeEEEEeCcCCcCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEeeCCCCCCCEEEEE
Confidence 678999999999999999999999999998874 999999999999999987 8999999999998 99999
Q ss_pred cCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEec
Q 008772 151 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 230 (554)
Q Consensus 151 VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~ 230 (554)
|||.|+.+... ..+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ .+++|+||++
T Consensus 82 vgP~~~~~~~~-~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~-~~~~V~~v~~ 159 (184)
T 1spv_A 82 VGPVWRGGEQN-EDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHA-LPEQVYFVCY 159 (184)
T ss_dssp CCCCCSSSSSS-HHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCC-SSSEEEEEES
T ss_pred cCCcccCCCcc-hHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 99999876543 467999999999999999999999999999999999999999999999999999875 5889999999
Q ss_pred ChhhHHHHHHHccccCCCChh
Q 008772 231 TASDTEIYKRLLPLYFPRDKH 251 (554)
Q Consensus 231 ~~~~~~~y~~~l~~yfpr~~~ 251 (554)
++.++++|+++|+.|||+..+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~ 180 (184)
T 1spv_A 160 DEENAHLYERLLTQQGDEEHH 180 (184)
T ss_dssp SHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHHHhCCcccc
Confidence 999999999999999997643
No 4
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=5.4e-40 Score=315.22 Aligned_cols=172 Identities=21% Similarity=0.302 Sum_probs=157.1
Q ss_pred CCCcccCCCCCEEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHh----CCCCCCCEEEccc--
Q 008772 73 SRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL----GGCRTGMAKVTNA-- 145 (554)
Q Consensus 73 ~~f~~~~~~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~-- 145 (554)
..+..+..+|.+|.+++|||+++++|||||+||+.|.+|||+ ++|+++||++|++||+++ ++|++|++++|+|
T Consensus 9 ~~~~~~~~~~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~~~ 88 (193)
T 1yd9_A 9 VLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHG 88 (193)
T ss_dssp EEEEEECTTSCEEEEECSCGGGCCCSEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEECTT
T ss_pred EecccCcCCCCEEEEEeCccCcCcCCEEEECCCccCCCCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEecCCC
Confidence 344556678999999999999999999999999999998874 999999999999999875 8999999999998
Q ss_pred ----eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcC-C
Q 008772 146 ----RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-D 220 (554)
Q Consensus 146 ----~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~-~ 220 (554)
||||+|||.|+.. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ +
T Consensus 89 L~~k~VIH~vgP~~~~~---~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~ 165 (193)
T 1yd9_A 89 LPAKFVIHCNSPVWGSD---KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSS 165 (193)
T ss_dssp SSSSEEEEECCCCTTST---THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTC
T ss_pred CCCCEEEEeCCCCcCCc---chHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999643 3467999999999999999999999999999999999999999999999999998764 6
Q ss_pred CccEEEEEecChhhHHHHHHHccccCC
Q 008772 221 KISAVVFCTTTASDTEIYKRLLPLYFP 247 (554)
Q Consensus 221 ~i~~V~fv~~~~~~~~~y~~~l~~yfp 247 (554)
++++|+||++++.++++|++.|..+.+
T Consensus 166 ~l~~V~fv~~~~~~~~~~~~~l~~~~~ 192 (193)
T 1yd9_A 166 SIKTVYFVLFDSESIGIYVQEMAKLDA 192 (193)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTTC
T ss_pred CcCEEEEEECCHHHHHHHHHHHHhhhc
Confidence 799999999999999999999876543
No 5
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=312.51 Aligned_cols=168 Identities=20% Similarity=0.320 Sum_probs=154.9
Q ss_pred CCcccCCCCCEEEEEECCCcce---eccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHh----CCCCCCCEEEccc
Q 008772 74 RFPVDHEINSKIYLWRGNPWNL---EVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL----GGCRTGMAKVTNA 145 (554)
Q Consensus 74 ~f~~~~~~n~~I~i~~GDI~~~---~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~ 145 (554)
-+..+..+|.+|.+|+|||+++ ++|||||+||+.|.+|||+ +||+++||++|++||+++ ++|++|++++|+|
T Consensus 10 ~~~~~~~~~~~i~i~~GDIt~~~~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~ 89 (193)
T 2xd7_A 10 LSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQS 89 (193)
T ss_dssp EEEEECTTSCEEEEEECCGGGGGGCCCSEEEEEECTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEEC
T ss_pred ecccccCCCCEEEEEeCcccccCCCCCCEEEECCCccCCCccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEeeC
Confidence 3445666789999999999999 9999999999999998874 999999999999999875 8899999999998
Q ss_pred ------eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcC
Q 008772 146 ------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK 219 (554)
Q Consensus 146 ------~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~ 219 (554)
||||+|||.|..+ ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++
T Consensus 90 ~~L~~k~VIH~vgP~~~~~---~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~ 166 (193)
T 2xd7_A 90 SGLAAKFVIHCHIPQWGSD---KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSS 166 (193)
T ss_dssp TTSSSSEEEEEECCCTTST---THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEECCCcCCCc---chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999754 3567999999999999999999999999999999999999999999999999999865
Q ss_pred -CCccEEEEEecChhhHHHHHHHccc
Q 008772 220 -DKISAVVFCTTTASDTEIYKRLLPL 244 (554)
Q Consensus 220 -~~i~~V~fv~~~~~~~~~y~~~l~~ 244 (554)
+++++|+||+++++++++|+++|..
T Consensus 167 ~~~l~~V~fv~~~~~~~~~~~~~l~~ 192 (193)
T 2xd7_A 167 ASSLKNVYFLLFDSESIGIYVQEMAK 192 (193)
T ss_dssp SCCCCEEEEEECSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHhh
Confidence 6799999999999999999998753
No 6
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=317.10 Aligned_cols=171 Identities=25% Similarity=0.313 Sum_probs=153.8
Q ss_pred cCCCCCEEEEEECCCcceeccEEEEcCCcCCC-CCCC-HHHHHHhhChhHHHHHHHhC---CCCCCCEEEccc------e
Q 008772 78 DHEINSKIYLWRGNPWNLEVDTVVNSTNENLD-EAHS-SPGLHAAAGPGLAEECATLG---GCRTGMAKVTNA------R 146 (554)
Q Consensus 78 ~~~~n~~I~i~~GDI~~~~vDaIVNsaN~~l~-~~~g-~~aI~~~aG~~l~~e~~~~~---~~~~G~~~vT~~------~ 146 (554)
....|.+|.||+|||+++++|||||+||+.|. ++|| ++||+++||++|++||++++ +|++|++++|+| |
T Consensus 34 ~t~~g~~I~i~~GDIt~~~vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~g~~Lp~k~ 113 (221)
T 3q71_A 34 VSPGGLQMLLVKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNLDCRY 113 (221)
T ss_dssp ECTTCCEEEEEESCGGGCCSSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEECTTSSSSE
T ss_pred eecCCcEEEEEeCcccCCcCCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEcCCCCCCCE
Confidence 45568999999999999999999999999996 5555 58999999999999999864 799999999998 9
Q ss_pred EEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCccEE
Q 008772 147 VIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISAV 225 (554)
Q Consensus 147 IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~-~~i~~V 225 (554)
|||+|||.|+.+.. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|+++++ .++++|
T Consensus 114 VIHtVgP~~~~~~~-~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~~~~l~~V 192 (221)
T 3q71_A 114 VLHVVAPEWRNGST-SSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQEV 192 (221)
T ss_dssp EEEECCCCCTTTCH-HHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCCCSSCCEE
T ss_pred EEEeCCCCCcCCCc-hHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 99999999988654 3468999999999999999999999999999999999999999999999999999985 689999
Q ss_pred EEEecCh--hhHHHHHHHccccCCCC
Q 008772 226 VFCTTTA--SDTEIYKRLLPLYFPRD 249 (554)
Q Consensus 226 ~fv~~~~--~~~~~y~~~l~~yfpr~ 249 (554)
+||++++ ..+++|.+.|...||.+
T Consensus 193 ~fv~f~~d~~~~~~f~~~l~~r~~~~ 218 (221)
T 3q71_A 193 HFLLHPSDHENIQAFSDEFARRANGN 218 (221)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHC--
T ss_pred EEEEeCCCHHHHHHHHHHHHHHccCC
Confidence 9999965 45699999999888744
No 7
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=5.3e-39 Score=305.09 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=145.9
Q ss_pred CCCEEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHhCCCCCCCEEEccc------eEEEEcCc
Q 008772 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLGGCRTGMAKVTNA------RVIHTVGP 153 (554)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~------~IIH~VgP 153 (554)
.+.+|++|+|||+++++|||||+||++|.+++|+ +||+++||++|++||+++++|++|++++|+| ||||+|||
T Consensus 20 g~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGV~~aI~~aaG~~l~~ec~~~~~~~~G~a~iT~~~~L~~k~VIH~vgP 99 (183)
T 4abl_A 20 GSIIFQVASGDITKEEADVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQAQQRKNDYIITGGGFLRCKNIIHVIGG 99 (183)
T ss_dssp TTEEEEEEESCGGGCBCSEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHHHHSCCSEEEEECTTSBSSEEEEEETT
T ss_pred CCEEEEEEeCcccCcccCEEEECCCCCCCCCccHHHHHHHHhhHHHHHHHHHhcCCCCCceEEecCCCCCCCEEEEeCcH
Confidence 4689999999999999999999999999998885 8999999999999999999999999999998 99999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCccEEEEEecCh
Q 008772 154 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISAVVFCTTTA 232 (554)
Q Consensus 154 ~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~-~~i~~V~fv~~~~ 232 (554)
.| |++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ ..+++|+||++++
T Consensus 100 ~~-----------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~ 168 (183)
T 4abl_A 100 ND-----------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLP 168 (183)
T ss_dssp SC-----------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEEESCH
T ss_pred HH-----------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCH
Confidence 76 99999999999999999999999999999999999999999999999999985 6899999999999
Q ss_pred hhHHHHHHHccc
Q 008772 233 SDTEIYKRLLPL 244 (554)
Q Consensus 233 ~~~~~y~~~l~~ 244 (554)
+++++|++.|..
T Consensus 169 ~~~~~f~~~l~k 180 (183)
T 4abl_A 169 QVLDVFYANMKK 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 8
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=3.9e-38 Score=294.33 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=138.8
Q ss_pred EEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHhCCCCCCCEEEccc---eEEEEcCccccCCC
Q 008772 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLGGCRTGMAKVTNA---RVIHTVGPKYAVKY 159 (554)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~---~IIH~VgP~~~~~~ 159 (554)
..+||+||||++++|||||+||++|.+|||+ +||+++||+++ +.++|++|++++|+| ||||+|||.|+.+.
T Consensus 11 ~~~~~~GDIt~~~vDAIVNaAN~~l~~ggGV~~aI~~aaG~~l-----~~~~~~~G~a~iT~~~~k~VIHtVGP~~~~~~ 85 (168)
T 3gpg_A 11 SYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESF-----KNSATPVGTAKTVMCGTYPVIHAVGPNFSNYS 85 (168)
T ss_dssp CC-CEESCGGGCCSSCEEEECCTTCCCCSHHHHHHHHHCGGGG-----TTCCCCTTCEEEEEETTEEEEEECCCCTTTSC
T ss_pred ceEEEeCcCCcccCCEEEeCCCcccCCCchHHHHHHHHhhHHh-----hcCCCCCCCEEEecCCCCEEEEeCCCCcCCCC
Confidence 4578999999999999999999999998885 99999999987 378999999999998 99999999999887
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHHHHH
Q 008772 160 HTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYK 239 (554)
Q Consensus 160 ~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~~y~ 239 (554)
..++++.|++||++||++|.+++++|||||+||||++|||++++|+ +++++++|++. .+++|+||+++++++++|+
T Consensus 86 ~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~---~~~~V~fv~f~~~~~~~y~ 161 (168)
T 3gpg_A 86 ESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDS---TDADVVIYCRDKEWEKKIS 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTT---CCSEEEEEESCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccC---CCCEEEEEECCHHHHHHHH
Confidence 6666789999999999999999999999999999999999999999 88999888754 4889999999999999999
Q ss_pred HHccc
Q 008772 240 RLLPL 244 (554)
Q Consensus 240 ~~l~~ 244 (554)
++|+.
T Consensus 162 ~~l~~ 166 (168)
T 3gpg_A 162 EAIQM 166 (168)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 98863
No 9
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=5.5e-37 Score=294.35 Aligned_cols=153 Identities=19% Similarity=0.193 Sum_probs=145.8
Q ss_pred CCCEEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHhCCCCCCCEEEccc------eEEEEcCc
Q 008772 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLGGCRTGMAKVTNA------RVIHTVGP 153 (554)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~------~IIH~VgP 153 (554)
.+.+|++|+|||+++++|||||+||+.|.+|+|+ +||+++||++|++||+++++|++|++++|+| ||||+|||
T Consensus 31 ~~~~i~i~~GDIt~~~vDaIVNaaN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~~G~a~iT~g~~L~~k~VIH~vgp 110 (199)
T 3kh6_A 31 GAITFQVATGDIATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLAAQPHRDFIITPGGCLKCKIIIHVPGG 110 (199)
T ss_dssp TTEEEEEEESCGGGCCSSEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHHTSCCCSSEEEECTTSSSSEEEEEETT
T ss_pred CCEEEEEEecccccCcCCEEEECCCCCCCCCchHHHHHHHHhhHHHHHHHHHhCCCCCCeEEEecCCCCCCCEEEEeCCC
Confidence 4689999999999999999999999999998885 8999999999999999999999999999998 99999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCccEEEEEecCh
Q 008772 154 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISAVVFCTTTA 232 (554)
Q Consensus 154 ~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~-~~i~~V~fv~~~~ 232 (554)
. .|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ ..+++|+||++++
T Consensus 111 ~-----------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~ 179 (199)
T 3kh6_A 111 K-----------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHSTPSLKTVKVVIFQP 179 (199)
T ss_dssp S-----------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCSSCSCCEEEEEESST
T ss_pred H-----------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCH
Confidence 4 399999999999999999999999999999999999999999999999999875 6799999999999
Q ss_pred hhHHHHHHHccc
Q 008772 233 SDTEIYKRLLPL 244 (554)
Q Consensus 233 ~~~~~y~~~l~~ 244 (554)
+++++|++.|..
T Consensus 180 ~~~~~f~~~l~~ 191 (199)
T 3kh6_A 180 ELLNIFYDSMKK 191 (199)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 10
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=8.8e-37 Score=285.43 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=140.8
Q ss_pred CCCEEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHhCCCCCCCEEEccc---eEEEEcCcccc
Q 008772 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLGGCRTGMAKVTNA---RVIHTVGPKYA 156 (554)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~---~IIH~VgP~~~ 156 (554)
.+.+|.+|+||||++++|||||+||+.|.+|+|+ ++|++++|++++ .++|++|++++|+| ||||+|||.|+
T Consensus 2 ~~~~i~v~~GDIt~~~vDAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----~~~~~~G~a~iT~~~~k~VIH~VgP~~~ 76 (168)
T 3gqe_A 2 KAPSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFD-----LQPIEVGKARLVKGAAKHIIHAVGPNFN 76 (168)
T ss_dssp CCCEEEEEESCGGGCCSSEEEEEECTTSCCTTGGGSHHHHHCGGGCC-----CCCCCTTCEEEECCTTCCEEEEECCCTT
T ss_pred CCCeEEEEeCcccCcccCEEEeCCCcccCCCccHHHHHHHHhhHHhc-----CCCcCCCcEEEEcCCCCEEEEcCCCccC
Confidence 3689999999999999999999999999998884 899999999874 68999999999998 99999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHH
Q 008772 157 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 236 (554)
Q Consensus 157 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~ 236 (554)
.+...++++.|++||++||++|.+++++|||||+||||++|||++++|+ ++++|++..++++.+|+||+++++.++
T Consensus 77 ~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~----~i~~~l~~~~~~~~~V~iv~fd~~~~~ 152 (168)
T 3gqe_A 77 KVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQ----SLNHLLTALDTTDADVAIYCRDKKWEM 152 (168)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHH----HHHHHHHHHTTSCCEEEEEESCHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHH----HHHHHHHHCCCCCCeEEEEEcCHHHHH
Confidence 8776666789999999999999999999999999999999999999998 456777777777889999999999999
Q ss_pred HHHHHcc
Q 008772 237 IYKRLLP 243 (554)
Q Consensus 237 ~y~~~l~ 243 (554)
.|++++.
T Consensus 153 ~~~~~~~ 159 (168)
T 3gqe_A 153 TLKEAVA 159 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 11
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=2.8e-37 Score=292.78 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=140.7
Q ss_pred CCCCCcccCCCCCEEEEEECCCcce----eccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHH----hCCCCCCCEE
Q 008772 71 MVSRFPVDHEINSKIYLWRGNPWNL----EVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECAT----LGGCRTGMAK 141 (554)
Q Consensus 71 ~~~~f~~~~~~n~~I~i~~GDI~~~----~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~----~~~~~~G~~~ 141 (554)
++..|+.+..+|.+|+||+|||+++ ++|||||+||++|.+|||+ +||+++||++|++||++ .++|++|+++
T Consensus 8 ~~~~~~~~~~~~~~i~i~~GDIt~~~~~~~vDAIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~ 87 (182)
T 2acf_A 8 PVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 87 (182)
T ss_dssp CSCCCCSCEECSSSEEEEESCHHHHHHHHCCSEEEEECCTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEE
T ss_pred CccccccccccCCeEEEEeCcccccccCCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEE
Confidence 3457889999999999999999999 9999999999999999885 89999999999999986 4899999999
Q ss_pred Eccc-----eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHH
Q 008772 142 VTNA-----RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLE 216 (554)
Q Consensus 142 vT~~-----~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~ 216 (554)
+|+| ||||+|||.|+.+. .++.|++||+++ ++++|||||+||||++|||++++|++|++++++
T Consensus 88 iT~~~~L~~~VIH~vgP~~~~~~---~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~--- 155 (182)
T 2acf_A 88 LLSGHNLAKKCLHVVGPNLNAGE---DIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT--- 155 (182)
T ss_dssp EEECTTTCSEEEEECCCCGGGTC---CTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS---
T ss_pred EeeCCCCCceEEEECCCCCCCCc---hHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC---
Confidence 9998 89999999997643 256899999996 789999999999999999999999999999975
Q ss_pred HcCCCccEEEEEecChhhHHHHHHHccccCCCChh
Q 008772 217 KQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDKH 251 (554)
Q Consensus 217 ~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfpr~~~ 251 (554)
+|+||+++++ +|+++|+.||||...
T Consensus 156 -------~V~~v~~d~~---~y~~~l~~~~p~~~~ 180 (182)
T 2acf_A 156 -------QVYIAVNDKA---LYEQVVMDYLDNLKP 180 (182)
T ss_dssp -------EEEEEESCHH---HHHHHHHHHC-----
T ss_pred -------cEEEEECCHH---HHHHHHHHhCCCCCC
Confidence 7999999544 999999999998753
No 12
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=6.6e-37 Score=286.47 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=133.6
Q ss_pred CCEEEEEECCCcc----eeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHh----CCCCCCCEEEccc-----eE
Q 008772 82 NSKIYLWRGNPWN----LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNA-----RV 147 (554)
Q Consensus 82 n~~I~i~~GDI~~----~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~-----~I 147 (554)
..+|++|+||||+ +++|||||+||++|.+||| ++||+++||++|++||+++ ++|++|++++|+| ||
T Consensus 9 ~~~i~l~~GDIt~~~~~~~vDaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~g~l~~~~V 88 (168)
T 3eti_A 9 AGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSV 88 (168)
T ss_dssp ETTEEEEESCHHHHHHHHCCSEEEEEECTTCCCCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEEEEETTEEE
T ss_pred CCeEEEEeCcccccCCCCCCCEEEeCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEecCCCCccEE
Confidence 4689999999999 8999999999999999887 5999999999999999986 8899999999994 99
Q ss_pred EEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEE
Q 008772 148 IHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVF 227 (554)
Q Consensus 148 IH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~f 227 (554)
||+|||.|... ..+++|++||++||++ .+|||||+||||++|||++++|++|++++++ ++|+|
T Consensus 89 IHtVgP~~~~~---~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~---------~~V~~ 151 (168)
T 3eti_A 89 MNAVGPRNGDS---RVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLEVSLQCLLKTVTD---------RDLNV 151 (168)
T ss_dssp EEEECCCTTST---THHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS---------SCEEE
T ss_pred EEecCCCCCcc---hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc---------CeEEE
Confidence 99999999653 4468999999999985 4899999999999999999999999999987 57999
Q ss_pred EecChhhHHHHHHHcc
Q 008772 228 CTTTASDTEIYKRLLP 243 (554)
Q Consensus 228 v~~~~~~~~~y~~~l~ 243 (554)
|+|+++++++|+++|.
T Consensus 152 v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 152 FVYTDQERVTIENFFN 167 (168)
T ss_dssp EECCHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHhc
Confidence 9999999999999874
No 13
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=2.7e-36 Score=281.38 Aligned_cols=150 Identities=27% Similarity=0.381 Sum_probs=141.6
Q ss_pred EEEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHhCCCCCCCEEEccc------eEEEEcCcccc
Q 008772 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNA------RVIHTVGPKYA 156 (554)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~------~IIH~VgP~~~ 156 (554)
+|++++|||+++++|||||++|+.+.+|+| +++|++++|++|++||+++++|++|++++|++ ||||+|||.|+
T Consensus 3 ~i~i~~GDI~~~~~daIVnaaN~~l~~ggGv~~aI~~~~G~~l~~~c~~~g~~~~G~a~it~~~~L~~~~Vih~vgp~~~ 82 (159)
T 2dx6_A 3 RIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDE 82 (159)
T ss_dssp EEEEEESCGGGCCSSEEEEEEETTCCCCSTTHHHHHHHHCTHHHHHHHHHCCCCTTCEEEEECTTSSSSEEEEEEEESSS
T ss_pred EEEEEECcCCcCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHhcCCCCCCcEEEecCCCCCCCEEEEEeCCCCC
Confidence 799999999999999999999999999887 59999999999999999999999999999998 99999999997
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHH
Q 008772 157 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 236 (554)
Q Consensus 157 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~ 236 (554)
+ . ..+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++| +++++|+||++++.+++
T Consensus 83 -~-~--~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-----~~~~~V~~v~~~~~~~~ 153 (159)
T 2dx6_A 83 -P-A--SLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-----PDTLEVTLYGYREEDAE 153 (159)
T ss_dssp -C-C--CHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-----CTTCEEEEEESSHHHHH
T ss_pred -C-c--hHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-----CCCCEEEEEECCHHHHH
Confidence 2 2 3679999999999999999999999999999999999999999999999999 56889999999999999
Q ss_pred HHHHHc
Q 008772 237 IYKRLL 242 (554)
Q Consensus 237 ~y~~~l 242 (554)
+|+++|
T Consensus 154 ~~~~~l 159 (159)
T 2dx6_A 154 AIRRAL 159 (159)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999865
No 14
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=3.5e-36 Score=292.42 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=147.1
Q ss_pred CCEEEEEECCCcceeccEEEEcCCcCCCCCCC-HHHHHHhhC----hhHHHHHHH----hCC--CCCCCEEEccc-----
Q 008772 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAG----PGLAEECAT----LGG--CRTGMAKVTNA----- 145 (554)
Q Consensus 82 n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g-~~aI~~~aG----~~l~~e~~~----~~~--~~~G~~~vT~~----- 145 (554)
+.+|.+++|||+++++|||||+||+.|.+|+| ++||+++|| ++|++||++ +++ |++|++++|++
T Consensus 20 ~~~i~i~~GDIt~~~vDaIVNaaN~~l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~~G~a~iT~~~~L~~ 99 (211)
T 1vhu_A 20 DITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEE 99 (211)
T ss_dssp TEEEEEEESCGGGSCCSEEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTCCEEEECGGGGG
T ss_pred CEEEEEEecccCcCCCCEEEECCCccccCccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCcccCCcEEEEECCCCCc
Confidence 46899999999999999999999999999887 499999999 999999988 688 99999999987
Q ss_pred ----eEEEEcCc----cccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 008772 146 ----RVIHTVGP----KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 217 (554)
Q Consensus 146 ----~IIH~VgP----~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~ 217 (554)
||||+||| .|.. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+ +
T Consensus 100 ~g~k~VIH~vgP~~~~~~~~----~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l-~ 174 (211)
T 1vhu_A 100 RGIKYVFHTVGPICSGMWSE----ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFK-G 174 (211)
T ss_dssp GTCCEEEEEECCCCTTCCCH----HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCC-C
T ss_pred cCcCEEEEecCCccccccCc----chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHH-h
Confidence 79999999 8943 456899999999999999999999999999999999999999999999999999 4
Q ss_pred cCCCccEEEEEecChhhHHHHHHHccccCC
Q 008772 218 QKDKISAVVFCTTTASDTEIYKRLLPLYFP 247 (554)
Q Consensus 218 ~~~~i~~V~fv~~~~~~~~~y~~~l~~yfp 247 (554)
+ + +++|+||++++.++++|+++|+.|+-
T Consensus 175 ~-~-l~~V~~v~~~~~~~~~~~~~l~~~~~ 202 (211)
T 1vhu_A 175 S-A-VKEVALVIYDRKSAEVALKVFERSLE 202 (211)
T ss_dssp S-S-CCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred C-C-CCEEEEEECCHHHHHHHHHHHHHhhc
Confidence 4 3 89999999999999999999987764
No 15
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=1.8e-36 Score=288.19 Aligned_cols=145 Identities=16% Similarity=0.223 Sum_probs=134.3
Q ss_pred CCCEEEEEECCCcc----eeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHh----CCCCCCCEEEccc---eEE
Q 008772 81 INSKIYLWRGNPWN----LEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL----GGCRTGMAKVTNA---RVI 148 (554)
Q Consensus 81 ~n~~I~i~~GDI~~----~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~---~II 148 (554)
.+.+|.+|+||||+ +++|||||+||++|.+|||+ +||+++||++|++||+++ ++|++|++++|+| |||
T Consensus 36 ~~~~i~l~~GDIt~~~~~~~vDAIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~~~~L~VI 115 (193)
T 3ejg_A 36 VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIF 115 (193)
T ss_dssp EETTEEEEECCHHHHHHHCCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEEETTEEEE
T ss_pred CCCeEEEEeCcccccCcCCCcCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEecCCCeeEE
Confidence 57899999999999 89999999999999998885 999999999999999875 8999999999999 999
Q ss_pred EEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEE
Q 008772 149 HTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFC 228 (554)
Q Consensus 149 H~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv 228 (554)
|+|||.|.. ..++.|++||++||+. .+|||||+||||++|||++++|++|++++++ .+|+||
T Consensus 116 HtVGP~~~~----~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~---------~~V~fv 177 (193)
T 3ejg_A 116 NVVGPRKGK----HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNT---------KEVKVF 177 (193)
T ss_dssp EEECCCSST----THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCS---------SCEEEE
T ss_pred EecCCCCCc----hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc---------CeEEEE
Confidence 999999954 3567999999999983 3799999999999999999999999999987 379999
Q ss_pred ecChhhHHHHHHHcc
Q 008772 229 TTTASDTEIYKRLLP 243 (554)
Q Consensus 229 ~~~~~~~~~y~~~l~ 243 (554)
+|+++++++|+++|.
T Consensus 178 ~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 178 VYTDTEVCKVKDFVS 192 (193)
T ss_dssp ECSHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHhc
Confidence 999999999999874
No 16
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=4e-35 Score=276.75 Aligned_cols=154 Identities=17% Similarity=0.183 Sum_probs=138.2
Q ss_pred CCCCCCCCcccCCCCCEEEEEECCCcce----eccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHh----CCCCCC
Q 008772 68 GNGMVSRFPVDHEINSKIYLWRGNPWNL----EVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL----GGCRTG 138 (554)
Q Consensus 68 ~~~~~~~f~~~~~~n~~I~i~~GDI~~~----~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~----~~~~~G 138 (554)
|.+...||.. +.+|.+|+|||+++ ++|||||+||++|.+|+|+ +||++++|++|++||+++ ++|++|
T Consensus 6 ~~~~~~pf~~----~~~i~i~~GDIt~~~~~~~~DaIVNaaN~~l~~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G 81 (174)
T 2vri_A 6 AAPFTKPFAV----YKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVG 81 (174)
T ss_dssp TTEECCCSEE----ETTEEEEESCHHHHTTTSCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTT
T ss_pred CCCcCCccCC----CCeEEEEeccccccccCCCccEEEECCCccCCCCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCC
Confidence 3345566766 67899999999999 9999999999999998885 899999999999999874 899999
Q ss_pred CEEEccc---eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHH
Q 008772 139 MAKVTNA---RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 215 (554)
Q Consensus 139 ~~~vT~~---~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl 215 (554)
++++|++ ||||+|||.|... .++.|++||++||++ .+|||||+||||++|||++++|++|++++++
T Consensus 82 ~a~iT~~~~l~VIH~vgP~~~~~----~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-- 150 (174)
T 2vri_A 82 AGVMLECEKFNVFNVVGPRTGKH----EHSLLVEAYNSILFE-----NGIPLMPLLSCGIFGVRIENSLKALFSCDIN-- 150 (174)
T ss_dssp CEEEEECSSCEEEEEECCCSSTT----HHHHHHHHHHHHHHS-----SSCEEEECSSCGGGCCCHHHHHHHHHTSCCC--
T ss_pred eEEEEECCCCEEEEEcCCCCCcc----hHHHHHHHHHHHHhh-----CCcEEeCccccCCCCCCHHHHHHHHHHHHhh--
Confidence 9999999 9999999999532 468999999999985 3499999999999999999999999999976
Q ss_pred HHcCCCccEEEEEecChhhHHHHHHHcc
Q 008772 216 EKQKDKISAVVFCTTTASDTEIYKRLLP 243 (554)
Q Consensus 216 ~~~~~~i~~V~fv~~~~~~~~~y~~~l~ 243 (554)
++|+|++|++.++++|+++|+
T Consensus 151 -------~~V~~v~f~~~~~~~~~~~l~ 171 (174)
T 2vri_A 151 -------KPLQVFVYSSNEEQAVLKFLD 171 (174)
T ss_dssp -------SCEEEEECSHHHHHHHHHHHH
T ss_pred -------CcEEEEEcCHHHHHHHHHHHh
Confidence 579999999999999999884
No 17
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=4.7e-33 Score=261.42 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=126.1
Q ss_pred ccCCCCCEEEEEECCCcceecc--------EEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHh----CCCCCCCEEEc
Q 008772 77 VDHEINSKIYLWRGNPWNLEVD--------TVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL----GGCRTGMAKVT 143 (554)
Q Consensus 77 ~~~~~n~~I~i~~GDI~~~~vD--------aIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT 143 (554)
.....+.+|++|+||||++++| ||||+||++|.++||+ +||+++||++|++||+++ ++|+ +++|
T Consensus 8 ~~~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT 84 (176)
T 3ejf_A 8 CEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVT 84 (176)
T ss_dssp --CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCCCCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEE
T ss_pred ccCCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeec
Confidence 3445678999999999999765 5999999999998885 999999999999999986 8888 6666
Q ss_pred cc------eEEEEcCccccCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 008772 144 NA------RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 217 (554)
Q Consensus 144 ~~------~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~ 217 (554)
.| +|||+|||.|... ..+++|++||++||+ ++++|||||+||||++|||++++|++|+++++.
T Consensus 85 ~G~~l~t~~VIHtVGP~~~~~---~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~---- 153 (176)
T 3ejf_A 85 PSFVKGIQCVNNVVGPRHGDN---NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG---- 153 (176)
T ss_dssp CCCSTTEEEEEEECCCCTTCS---CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT----
T ss_pred ccccccCCEEEEeCCCCCCCc---cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh----
Confidence 66 8999999999643 246799999999998 999999999999999999999999999999983
Q ss_pred cCCCccEEEEEecChhhHHHHHHHc
Q 008772 218 QKDKISAVVFCTTTASDTEIYKRLL 242 (554)
Q Consensus 218 ~~~~i~~V~fv~~~~~~~~~y~~~l 242 (554)
..-+|++..+|.+.+++|+.++
T Consensus 154 ---~~v~v~~~~~D~e~~~~~~~~~ 175 (176)
T 3ejf_A 154 ---CTIRVLLFSLSQEHIDYFDVTC 175 (176)
T ss_dssp ---CCCEEEEEESCHHHHHHHHHTC
T ss_pred ---cceEEEEEcCCHHHHHHHHHHh
Confidence 1224555555678888888765
No 18
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.97 E-value=2.8e-31 Score=279.73 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=137.1
Q ss_pred CEEEEEECCCcceeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHHHhCCCCCCCEEEccc---eEEEEcCccccCC
Q 008772 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLGGCRTGMAKVTNA---RVIHTVGPKYAVK 158 (554)
Q Consensus 83 ~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~---~IIH~VgP~~~~~ 158 (554)
..+.|++||||+.++|||||+||++|..|||+ +|||++||+++.+ +.|++|++++|+| ||||+|||.|+.+
T Consensus 344 PsfrIIRgDITk~~vDAIVNAANtsL~gGgGVdGAIhraaG~~ll~-----~~~~tG~AkIT~g~aKyIIHtVGPvw~~g 418 (670)
T 4gua_A 344 PSYRTKRENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPTSFTD-----SATETGTARMTVCLGKKVIHAVGPDFRKH 418 (670)
T ss_dssp CCEEEECSCGGGCCSSEEEEECCTTCCCCSSHHHHHHHHCGGGGTT-----CCCCTTCEEEEEETTEEEEEECCCCTTSS
T ss_pred cceeEEeccccccccCEEEeCCCCCCCCcCCHhHHHHHHhhHHHhc-----CCCCcceEEEecCCCceEEEcCCCCccCC
Confidence 35788999999999999999999999999985 9999999998854 6799999999999 9999999999988
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhhHHHH
Q 008772 159 YHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIY 238 (554)
Q Consensus 159 ~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~~y 238 (554)
...+..++|++||+++|++|.|++++|||||+||||+||||.+ +++++++++..||+.+. -.|+++++|.+-...+
T Consensus 419 ~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D---~dV~IvcfDKkwe~~I 494 (670)
T 4gua_A 419 PEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTD---ADVTIYCLDKKWKERI 494 (670)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSS---CEEEEECSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccC---CEEEEEEecChHHHHH
Confidence 7776667999999999999999999999999999999999987 58999999999998753 2799999987777777
Q ss_pred HHHcc
Q 008772 239 KRLLP 243 (554)
Q Consensus 239 ~~~l~ 243 (554)
++.+.
T Consensus 495 k~ai~ 499 (670)
T 4gua_A 495 DAALQ 499 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 19
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.97 E-value=4.4e-32 Score=273.00 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=141.0
Q ss_pred CCEEEEEECCCcce-------------eccEEEEcCCcCCCCCCCH-HHHHHhhC-hhHHHHHHHh---CCCCCCCEEEc
Q 008772 82 NSKIYLWRGNPWNL-------------EVDTVVNSTNENLDEAHSS-PGLHAAAG-PGLAEECATL---GGCRTGMAKVT 143 (554)
Q Consensus 82 n~~I~i~~GDI~~~-------------~vDaIVNsaN~~l~~~~g~-~aI~~~aG-~~l~~e~~~~---~~~~~G~~~vT 143 (554)
+.+|.+++|||+++ ++|||||+||+.+.+|||+ +||++++| +.+++||+++ +.|++|++++|
T Consensus 44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~~gGGVd~AI~raaGg~~l~~ec~~~~~~g~~~~G~a~iT 123 (284)
T 1njr_A 44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVV 123 (284)
T ss_dssp -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCCCCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEEE
T ss_pred CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCCCCchHHHHHHHhhCcHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 46899999999999 8999999999999999885 89999965 7789999884 78999999998
Q ss_pred cc----------------eEEEEcCccccCCC--ch-----hHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCCh
Q 008772 144 NA----------------RVIHTVGPKYAVKY--HT-----AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPR 200 (554)
Q Consensus 144 ~~----------------~IIH~VgP~~~~~~--~~-----~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~ 200 (554)
++ ||||+|||.|..+. .+ ...+.|++||++||++| +++++|||||+||||++|||+
T Consensus 124 ~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~ 202 (284)
T 1njr_A 124 DLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPP 202 (284)
T ss_dssp EGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCH
T ss_pred ECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCH
Confidence 54 69999999997652 11 23578999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCCCChhhHHHHH
Q 008772 201 EPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPRDKHEEEVAI 257 (554)
Q Consensus 201 ~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr~~~e~~~~~ 257 (554)
+++|++|+++++.|++.++. .++.|+||.+ +.+ +..|++.+..||..++
T Consensus 203 ~~aA~i~~~av~~f~~~~~~s~~~~~~vi~~~~-~~~-------~~~~~~~~~~ee~~~~ 254 (284)
T 1njr_A 203 IISCKSMAFALRLYMAGDHISKELKNVLIMYYL-QYP-------FEPFFPESCKIECQKL 254 (284)
T ss_dssp HHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHT-TCC-------CGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccceEEEEEEC-HHH-------HHHHHhhhHHHHHHHh
Confidence 99999999999999987652 2355666655 443 4568888888877665
No 20
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.96 E-value=2.1e-30 Score=259.22 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=150.1
Q ss_pred CcChHHHHhhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCCCeEEEEEcCCCCCCCCCCHHHHH
Q 008772 380 SLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMR 459 (554)
Q Consensus 380 ~~dl~~i~~~~~~y~~G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~~~~fviV~D~tg~s~~~~~~~~~lk 459 (554)
.+|+++|+++++||+.|.|++|||||+++++++++...|+|.+++|++++++.++.++|++|||||+++..+.|+.+|++
T Consensus 1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n~p~~~wl~ 80 (256)
T 3pg7_A 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLS 80 (256)
T ss_dssp CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHH
T ss_pred CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCcccCCcHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhcccceEEEEcCChhhHHHHHHh-hhcccccccceEEEECCHhHHhccCCCCCCCCChHHHHhhhhhc
Q 008772 460 RLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTL-QLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVN 536 (554)
Q Consensus 460 k~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~-~~Fls~K~~~KI~~~~~leeL~~~I~~e~L~iP~~v~~~d~~~~ 536 (554)
++++++|+.+++||+++||||||+|++.+++.+ ++|.+.|+++|++|++++++|.++|++++|.||++|+++|++++
T Consensus 81 ~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~~L~LP~~t~~~~~d~r 158 (256)
T 3pg7_A 81 KWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLK 158 (256)
T ss_dssp HTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGGGCCCCHHHHHTTSSCE
T ss_pred HHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHHHcCCChHHHhhcccce
Confidence 999999999999999999999999999887765 66667799999999999999999999999999999999999865
No 21
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.94 E-value=5.1e-27 Score=238.02 Aligned_cols=162 Identities=17% Similarity=0.274 Sum_probs=124.0
Q ss_pred hHHHHHHHHHhcCc---ChHHHHhhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCCCeEEEEEc
Q 008772 368 YSLHSRYLAKANSL---NLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFH 444 (554)
Q Consensus 368 ~~~~~~~l~~a~~~---dl~~i~~~~~~y~~G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~~~~fviV~D~ 444 (554)
.+.|++||+|++.. ++++|+..++||++|.|++||||||+++++++.+.+|+|.+++|+++++++++.++|++||||
T Consensus 5 ~~~~~efM~r~~~~~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~~~~y~lV~D~ 84 (290)
T 3peg_A 5 SSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDL 84 (290)
T ss_dssp -------------------CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTTSCEEEEEEC
T ss_pred hHHHHHHHHHhhccChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 45689999999864 556677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHH-HhhhcccccccceEEEECCHhHHhccCCCCCCC
Q 008772 445 SAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIF-TLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLT 523 (554)
Q Consensus 445 tg~s~~~~~~~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~-~~~~Fls~K~~~KI~~~~~leeL~~~I~~e~L~ 523 (554)
|+++..+.|+.+|++++++++|+.+++||+++||+|||+|++.+++ ++++|.+.|..+|++|++++.+|.++++.+++.
T Consensus 85 T~~~~~n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L~~~i~~~~~~ 164 (290)
T 3peg_A 85 THTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQK 164 (290)
T ss_dssp TTCCGGGCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC-----------
T ss_pred CCCCccCCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHHHhhCCHHHhc
Confidence 9999999999999999999999999999999999999999999774 668888899999999999999999999999888
Q ss_pred CChHHH
Q 008772 524 IPDFVF 529 (554)
Q Consensus 524 iP~~v~ 529 (554)
+|+.++
T Consensus 165 lp~~~~ 170 (290)
T 3peg_A 165 LPAATL 170 (290)
T ss_dssp ------
T ss_pred Cccccc
Confidence 855433
No 22
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.91 E-value=2.4e-24 Score=200.35 Aligned_cols=126 Identities=14% Similarity=0.172 Sum_probs=112.4
Q ss_pred CCEEEEEECCCccee-ccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHhCCCCCCCEEEccc---eEEEEcCcc-c
Q 008772 82 NSKIYLWRGNPWNLE-VDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNA---RVIHTVGPK-Y 155 (554)
Q Consensus 82 n~~I~i~~GDI~~~~-vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~---~IIH~VgP~-~ 155 (554)
+.+|++++|||++.+ +|||||++|+.+.+|+| +.+|++++| ++ .||.+ ++|++|++++|++ ||||+|||. |
T Consensus 19 ~~~i~~v~GDIt~~~~~daIVnaaN~~~~~GgGVa~ai~~~~p-~~-~e~~~-~~~~~G~a~it~~~~~~Vih~vg~~~~ 95 (160)
T 2jyc_A 19 GSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFG-GV-QELLN-QQKKSGEVAVLKRDGRYIYYLITKKRA 95 (160)
T ss_dssp SCSEEEEESCSSSSCSSCEEEEEECTTCCCCSSTHHHHHHHHC-CH-HHHHH-HCCCTTCEEEEEETTEEEEEEECSSST
T ss_pred CceEEEEeCcCCCCCCCCEEEEccCCcCCCCCcHHHHHHHHCh-HH-HHHhc-cCCCCCcEEEEecCCcEEEEEecCCCC
Confidence 578999999999998 79999999999999888 589999995 55 68876 6799999999988 999999998 6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHH
Q 008772 156 AVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 213 (554)
Q Consensus 156 ~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~ 213 (554)
... . ..+.|++||+++|+.|.+++++|||||.||||++|+|++++++++.+++.+
T Consensus 96 ~~~-~--~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 96 SHK-P--TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp TSC-C--CHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred CCC-C--hHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 542 2 257899999999999999999999999999999999999999998887654
No 23
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.91 E-value=2.1e-24 Score=198.72 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=111.4
Q ss_pred CCEEEEEECCCccee-ccEEEEcCCcCCCCCCC-HHHHHHhhChhHHHHHHHhCCCCCCCEEEccc---eEEEEcCcc-c
Q 008772 82 NSKIYLWRGNPWNLE-VDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNA---RVIHTVGPK-Y 155 (554)
Q Consensus 82 n~~I~i~~GDI~~~~-vDaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~---~IIH~VgP~-~ 155 (554)
+.+|++++|||++.+ +|||||++|+.+.+|+| +.+|++++ |++ .||.+ +.|++|++++|++ ||||++||. |
T Consensus 8 ~~~i~~v~GDIt~~~~~daIVnaaN~~~~~G~Gva~ai~~~~-p~~-~~~~~-~~~~~G~a~it~~~~~~Vih~v~~~~~ 84 (149)
T 2eee_A 8 GSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKF-GGV-QELLN-QQKKSGEVAVLKRDGRYIYYLITKKRA 84 (149)
T ss_dssp SCCCEEECSCSSSSCSSCEEEEEEETTCCCCSTTHHHHHHHT-CCH-HHHHT-TCCCTTCEEEEESSSSEEEEEEEESST
T ss_pred CeeEEEEecccccCCCCcEEEEEeCCCCCcCCcHHHHHHHHC-cHH-HHHhc-ccCCCccEEEEEcCCCEEEEEEecCCC
Confidence 568999999999998 79999999999999887 58999988 555 68876 6799999999988 999999998 6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHH
Q 008772 156 AVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 212 (554)
Q Consensus 156 ~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~ 212 (554)
... . ..+.|++||+++|+.|.+++++|||||.||||++|+|++++++++.+++.
T Consensus 85 ~~~-~--~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~ 138 (149)
T 2eee_A 85 SHK-P--TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFE 138 (149)
T ss_dssp TSC-C--CHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred CCC-C--CHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 542 2 25689999999999999999999999999999999999999999877665
No 24
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.88 E-value=1.7e-22 Score=187.82 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=110.1
Q ss_pred CEEEEEECCCcc---eeccEEEEcCCcCCCCCCCH-HHHHHhhChhHHHHHH----HhCCCCCCCEEEccc----eEEEE
Q 008772 83 SKIYLWRGNPWN---LEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECA----TLGGCRTGMAKVTNA----RVIHT 150 (554)
Q Consensus 83 ~~I~i~~GDI~~---~~vDaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~----~~~~~~~G~~~vT~~----~IIH~ 150 (554)
..|.+++|||++ .++|||||++|..+.+|+|+ .+|++++ |++.++|+ +.++|++|++++|++ ||||+
T Consensus 4 M~i~~v~GDit~~~~~~~daIvn~~N~~~~~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~Vi~~ 82 (158)
T 2fg1_A 4 MEILYIKGDATAPIGSGVKVITHICNDIGGWGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNVENKLYVANM 82 (158)
T ss_dssp CCCEEEESCTTSCCSSSCEEEEEEEETTCCCCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEEETTEEEEEE
T ss_pred eEEEEEecccCCCCCCCCeEEEEEecCCCCcCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEecCCCeEEEEE
Confidence 368999999999 78999999999999999885 8999998 78777754 467899999999976 99999
Q ss_pred cCcc-ccCCCch---hHHHHHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHH
Q 008772 151 VGPK-YAVKYHT---AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 212 (554)
Q Consensus 151 VgP~-~~~~~~~---~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~ 212 (554)
|||. |..+... ...+.|++||+++++.|.+++. |||||.||||++|+|.+++++++.+++.
T Consensus 83 v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l~ 147 (158)
T 2fg1_A 83 IGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEELI 147 (158)
T ss_dssp EEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred EEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHhc
Confidence 9999 7543211 2357899999999999999997 9999999999999999999988766553
No 25
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.84 E-value=2.5e-21 Score=199.62 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=128.1
Q ss_pred hHHHHhhcceE-ecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCC------CeEEEEEcCCCCCCC--CC
Q 008772 383 LSEIAEMKIVY-RGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQK------PYSIVYFHSAASLQL--QP 453 (554)
Q Consensus 383 l~~i~~~~~~y-~~G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~~~------~fviV~D~tg~s~~~--~~ 453 (554)
+.++.+.|+++ ..|+|++||||+++++++++++.++.+++++++++.+|..+.. .+++|+|++|+++.+ .+
T Consensus 135 i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~ 214 (316)
T 3hx3_A 135 VRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASL 214 (316)
T ss_dssp HHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC
T ss_pred HHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccC
Confidence 45556778865 4599999999999999999999999999999999999987753 599999999999863 46
Q ss_pred CHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEE-CCHhHHhccCCCCCCC
Q 008772 454 DLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYV-DRLLQLFRYVPREQLT 523 (554)
Q Consensus 454 ~~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~-~~leeL~~~I~~e~L~ 523 (554)
+++++|+++.+++++||+||+.+||||+|++|..+|++++||+++|+++||+++ +++++|.++||+++|+
T Consensus 215 ~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP 285 (316)
T 3hx3_A 215 RTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILP 285 (316)
T ss_dssp CHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSB
T ss_pred ChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCc
Confidence 888999999999999999999999999999999999999999999999999999 5789999999999874
No 26
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.83 E-value=2.2e-20 Score=186.72 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=126.5
Q ss_pred ChHHHHhhcce-EecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCC------CeEEEEEcCCCCCCC--C
Q 008772 382 NLSEIAEMKIV-YRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQK------PYSIVYFHSAASLQL--Q 452 (554)
Q Consensus 382 dl~~i~~~~~~-y~~G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~~~------~fviV~D~tg~s~~~--~ 452 (554)
++..+.+.|++ +..|+|++||||++++.++++++.++.++++++++.++|.++.+ .+++|+|++|+++.+ .
T Consensus 75 ~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~ 154 (262)
T 1r5l_A 75 SIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQ 154 (262)
T ss_dssp GTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHH
T ss_pred HHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhc
Confidence 35556677875 45699999999999999999999999999999999999877654 499999999999874 4
Q ss_pred CCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECC--HhHHhccCCCCCCC
Q 008772 453 PDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPREQLT 523 (554)
Q Consensus 453 ~~~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~--leeL~~~I~~e~L~ 523 (554)
++++++|++..+++++||+||+++||||+|++|.++|++++||+++++++||+++++ .++|.++|| ++|+
T Consensus 155 ~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP 226 (262)
T 1r5l_A 155 ITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILP 226 (262)
T ss_dssp CCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSC
T ss_pred cCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCc
Confidence 678999999999999999999999999999999999999999999999999999964 799999999 8875
No 27
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.79 E-value=2.4e-19 Score=182.83 Aligned_cols=138 Identities=18% Similarity=0.280 Sum_probs=117.9
Q ss_pred HHhhcceEecccCCCCCcEEEEEcccccCCC----CCHHHHHHHHHHHhhhhc--------------CCCeEEEEEcCCC
Q 008772 386 IAEMKIVYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEPLI--------------QKPYSIVYFHSAA 447 (554)
Q Consensus 386 i~~~~~~y~~G~D~~GrpViv~~~~~~~~~~----~d~e~ll~~vi~~Le~~~--------------~~~fviV~D~tg~ 447 (554)
+.+....|..|+|++||||++++.++++++. .+.++++++++..+|.++ .+.+++|+|++|+
T Consensus 100 ~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~ 179 (296)
T 1aua_A 100 IAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGI 179 (296)
T ss_dssp HGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred HHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCC
Confidence 3333334566999999999999999998753 588999999888877443 2459999999999
Q ss_pred CCCCCCC-HHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECC--HhHHhccCCCCCCC
Q 008772 448 SLQLQPD-LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPREQLT 523 (554)
Q Consensus 448 s~~~~~~-~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~--leeL~~~I~~e~L~ 523 (554)
++.+.+. .+++|++..+++.+||+||+.+||||+|++|.++|++++|||++++++||+++.+ .++|.++||+++|+
T Consensus 180 s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP 258 (296)
T 1aua_A 180 SISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 258 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSB
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCc
Confidence 9864333 6789999999999999999999999999999999999999999999999999975 78899999998764
No 28
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.77 E-value=4.5e-19 Score=183.03 Aligned_cols=138 Identities=20% Similarity=0.300 Sum_probs=118.7
Q ss_pred HHhhcceEecccCCCCCcEEEEEcccccCCC----CCHHHHHHHHHHHhhhhc--------------CCCeEEEEEcCCC
Q 008772 386 IAEMKIVYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEPLI--------------QKPYSIVYFHSAA 447 (554)
Q Consensus 386 i~~~~~~y~~G~D~~GrpViv~~~~~~~~~~----~d~e~ll~~vi~~Le~~~--------------~~~fviV~D~tg~ 447 (554)
+.+.+..|..|+|++||||++++.++++++. .+.++++++++..+|.++ .+..++|+|++|+
T Consensus 115 ~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~ 194 (320)
T 3q8g_A 115 LAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGI 194 (320)
T ss_dssp HHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred HHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCC
Confidence 3445556777999999999999999998764 378888888887777543 2457999999999
Q ss_pred CCCCCCC-HHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECC--HhHHhccCCCCCCC
Q 008772 448 SLQLQPD-LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPREQLT 523 (554)
Q Consensus 448 s~~~~~~-~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~--leeL~~~I~~e~L~ 523 (554)
++.+.+. .+++|++..+++++||+||+.+||||+|++|+++|++++||+++++++||+++.+ .++|.++||+++|+
T Consensus 195 sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP 273 (320)
T 3q8g_A 195 SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLP 273 (320)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSB
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCC
Confidence 9864332 6889999999999999999999999999999999999999999999999999965 68999999998874
No 29
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.75 E-value=3.6e-18 Score=181.59 Aligned_cols=130 Identities=14% Similarity=0.199 Sum_probs=117.1
Q ss_pred ecccCCCCCcEEEEEcccccCC----CCCHHHHHHHHHHHhhhhc-------------CCCeEEEEEcCCCCCCCC--CC
Q 008772 394 RGGVDSEGRPVMVVVGAHFLLR----CLDLERFVLYVVKEFEPLI-------------QKPYSIVYFHSAASLQLQ--PD 454 (554)
Q Consensus 394 ~~G~D~~GrpViv~~~~~~~~~----~~d~e~ll~~vi~~Le~~~-------------~~~fviV~D~tg~s~~~~--~~ 454 (554)
..|+|++||||++++.++++++ ..+.+++++++++.+|..+ .+.+++|+|++|+++.+. +.
T Consensus 88 ~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~ 167 (403)
T 1olm_A 88 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPA 167 (403)
T ss_dssp EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHH
T ss_pred eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHH
Confidence 4589999999999999999986 5799999999999988553 246999999999998744 35
Q ss_pred HHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECC--HhHHhccCCCCCCC
Q 008772 455 LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPREQLT 523 (554)
Q Consensus 455 ~~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~--leeL~~~I~~e~L~ 523 (554)
++++++++.+++.+||+||+++||||+|++|.++|++++|||++++++||+|+.+ .++|.++||+++|+
T Consensus 168 ~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP 238 (403)
T 1olm_A 168 VEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP 238 (403)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSB
T ss_pred HHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCc
Confidence 7899999999999999999999999999999999999999999999999999964 67899999998774
No 30
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=98.76 E-value=1.6e-08 Score=101.01 Aligned_cols=161 Identities=10% Similarity=0.055 Sum_probs=112.1
Q ss_pred CCEEEEEECCCcce---------eccEEEEcCCcCCCCCC---CH----HHHHHhhC--hhHHH--HH---HH--hCCCC
Q 008772 82 NSKIYLWRGNPWNL---------EVDTVVNSTNENLDEAH---SS----PGLHAAAG--PGLAE--EC---AT--LGGCR 136 (554)
Q Consensus 82 n~~I~i~~GDI~~~---------~vDaIVNsaN~~l~~~~---g~----~aI~~~aG--~~l~~--e~---~~--~~~~~ 136 (554)
..+|.|+.+|-... .-=++.|.||..--.|| |+ .+|.+... +.|.. +. ++ ..++.
T Consensus 64 ~t~i~V~~~dtl~aA~~L~~~~~~~v~vLNfAs~~~PGGG~~~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~~~~~~~~~ 143 (277)
T 3sig_A 64 PTRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEEGLARSSGLYASLRAVPQFYAFHHRQRDPLY 143 (277)
T ss_dssp -CEEEEESCCHHHHHHHHHHHCSSCCEEEEECCSSSTTTTGGGTCCSHHHHHHHHBSHHHHHTTCHHHHHHHHHHCCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHhcCCCeEEEecccccCCCCCcccCcchHHHHHHHhhhHHHHHhhhhhhhccccccCCCCC
Confidence 46899999987531 22389999998666554 22 24544432 11110 11 11 12344
Q ss_pred CCCEEEccc------------------eEEEEcCccccCC----CchhHHHHHHHHHHHHHHHHHHcCCccccccccccC
Q 008772 137 TGMAKVTNA------------------RVIHTVGPKYAVK----YHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTE 194 (554)
Q Consensus 137 ~G~~~vT~~------------------~IIH~VgP~~~~~----~~~~~~~~L~~~y~~~L~~a~e~~~~SIA~P~i~tG 194 (554)
+..++.|+. -||.++.|+|..- ...+..+.|.+.++.+|..|.++|+++|++|++|||
T Consensus 144 ~~~~IySP~V~vfR~~~~~ll~~p~~v~vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCG 223 (277)
T 3sig_A 144 SDHLIYSPGVPVFRDDAGRLLEEPYRVAFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCG 223 (277)
T ss_dssp CSCEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSS
T ss_pred CCCeEECCCcEEEeCCCCccccCCceeEEEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 555666654 4899999987421 122346789999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCh----hhHHHHHHHcc
Q 008772 195 AKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTA----SDTEIYKRLLP 243 (554)
Q Consensus 195 ~~g~P~~~~a~~~l~~v~~fl~~~~~~i~~V~fv~~~~----~~~~~y~~~l~ 243 (554)
.||+|++++|+++.+.+...- +....+++|+|+++++ ..+++|++.+.
T Consensus 224 vfgnpp~~VA~~~~~vL~~~~-~f~~~f~~VvFAv~d~~~~~~n~~~F~~~F~ 275 (277)
T 3sig_A 224 VFGNDPAQVAETFAGLLLDGG-PFAGRFAHVVFAVWDTAPGAPRHAAFARRFG 275 (277)
T ss_dssp TTCCCHHHHHHHHHHHHSTTC-TTTTTCSEEEEECCCCSTTCHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHhhcc-hhcCCceEEEEEEecCCCcchHHHHHHHHHh
Confidence 999999999999999887410 1234789999999986 57888888764
No 31
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=30.25 E-value=77 Score=30.12 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHcCCccccccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 008772 166 ALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 217 (554)
Q Consensus 166 ~L~~~y~~~L~~a~e~~~~SIA~P~i~tG~~g~P~~~~a~~~l~~v~~fl~~ 217 (554)
.=.+.++++++.|.+.|++.+++=+.||+++.=|.++. ..+++-+.+++.+
T Consensus 31 ~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev-~~Lm~l~~~~l~~ 81 (227)
T 2vg0_A 31 MGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDEL-AALIEIITDVVEE 81 (227)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHH-HHHHHHHHHHHHH
Confidence 34577888889999999999999999999999999988 5556777777776
No 32
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=28.51 E-value=1.4e+02 Score=25.10 Aligned_cols=50 Identities=8% Similarity=0.161 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCCC
Q 008772 199 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 248 (554)
Q Consensus 199 P~~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 248 (554)
..+.-++.+++.+..-|+..+. ++-++.+.+.+..++..+.+....||+.
T Consensus 45 d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~v~~~~f~~ 97 (125)
T 3l7q_A 45 TIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKS 97 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCC
Confidence 3455566666666666666543 3444555566778999999999999974
No 33
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=27.98 E-value=1.4e+02 Score=25.97 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCC---ccEEEEEecChhhHHHHHHHccccCC
Q 008772 199 PREPAAHVAIRTVRRFLEKQKDK---ISAVVFCTTTASDTEIYKRLLPLYFP 247 (554)
Q Consensus 199 P~~~~a~~~l~~v~~fl~~~~~~---i~~V~fv~~~~~~~~~y~~~l~~yfp 247 (554)
....-++.+++.+..-|+..+.+ +-++.+.+.+..++..+.++...||+
T Consensus 63 d~~~Qt~~~l~ni~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~ 114 (143)
T 3k0t_A 63 GIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIMGSYFS 114 (143)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCChHHEEEEEEEEcChHHHHHHHHHHHHHcC
Confidence 34555666666677777765533 44555555667899999999999997
No 34
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=27.03 E-value=1e+02 Score=26.02 Aligned_cols=114 Identities=7% Similarity=-0.039 Sum_probs=63.7
Q ss_pred hcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCCCeEEEEEcCCCCCCCCCCHHHHHHHHHHHhHH
Q 008772 389 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRK 468 (554)
Q Consensus 389 ~~~~y~~G~D~~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~~~~fviV~D~tg~s~~~~~~~~~lkk~~~~l~~~ 468 (554)
.|+++..-.+..+.-+-+-..+.+.. -|++.++..+-..++..-...+.+++|++.+.. +++.-+..-+. +...
T Consensus 7 ~~~mi~i~~~~~~~vl~v~~~G~lt~--~d~~~l~~~l~~~l~~~~~~~i~ll~~~~~f~G---~~~~a~~~d~k-~~~~ 80 (126)
T 2q3l_A 7 HGIAIGIERSQDDFYLAFKAVGKLTH--EDYEQMTPLLESALAGIKTPEIVALIDITELDG---LSLHAAWDDLK-LGLK 80 (126)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEECH--HHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEE---ECHHHHHHHHH-HHHH
T ss_pred cceeEEEEEcCCCCEEEEEEEeeECH--HHHHHHHHHHHHHHHhCCCceEEEEEEecCCCC---CCHHHHHHHHH-hhhh
Confidence 44444433333333333333455432 244444444444444333333888888765531 23332222222 2346
Q ss_pred hhcccceEEEEcCChhhHHHHHHhhhcccccccceEEEECCHhH
Q 008772 469 HQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQ 512 (554)
Q Consensus 469 ~p~rLk~iyiVnp~~~~k~~~~~~~~Fls~K~~~KI~~~~~lee 512 (554)
+...+..+-||--+.|.+.+.+++.+|++.. |++.+..++
T Consensus 81 h~~~~~RiAvV~d~~W~~~~~~~~~~~~~~e----vk~F~~~~~ 120 (126)
T 2q3l_A 81 HGKEFKRVAIIGQGELQEWATRVANWFTPGE----FKFFEDKRD 120 (126)
T ss_dssp HGGGEEEEEEECCSHHHHHHHHHHHHHCSSE----EEEESCHHH
T ss_pred HHhcCCEEEEEcChHHHHHHHHHHhhccCCc----eeccCCHHH
Confidence 6788999999999999999999999997653 555555443
No 35
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=24.49 E-value=1.5e+02 Score=25.28 Aligned_cols=50 Identities=8% Similarity=0.119 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCC---ccEEEEEecChhhHHHHHHHccccCCC
Q 008772 199 PREPAAHVAIRTVRRFLEKQKDK---ISAVVFCTTTASDTEIYKRLLPLYFPR 248 (554)
Q Consensus 199 P~~~~a~~~l~~v~~fl~~~~~~---i~~V~fv~~~~~~~~~y~~~l~~yfpr 248 (554)
..+.-++.+++.+..-|+..+.+ +-++.+.+.+..++..+.+....||+.
T Consensus 42 d~~~Q~~~~l~nl~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 94 (128)
T 3kjj_A 42 TAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAA 94 (128)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCC
Confidence 45667778888888888887643 444555566678899999999999974
No 36
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=24.31 E-value=1.7e+02 Score=24.48 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCC---ccEEEEEecChhhHHHHHHHccccCCC
Q 008772 199 PREPAAHVAIRTVRRFLEKQKDK---ISAVVFCTTTASDTEIYKRLLPLYFPR 248 (554)
Q Consensus 199 P~~~~a~~~l~~v~~fl~~~~~~---i~~V~fv~~~~~~~~~y~~~l~~yfpr 248 (554)
....-++.+++.+...|+....+ +-++.+.+.+..++..+.+....||+.
T Consensus 44 d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~ 96 (124)
T 1qd9_A 44 DIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDT 96 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHHHHHHHHcCC
Confidence 34555666666666667665533 444445556678898888888888873
No 37
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=23.22 E-value=1.6e+02 Score=24.64 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCCC
Q 008772 200 REPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 248 (554)
Q Consensus 200 ~~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 248 (554)
...-++.+++.+..-|+..+. .+-++.+.+.+..++..+.+....||+.
T Consensus 35 ~~~Q~~~~l~ni~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 86 (122)
T 3k12_A 35 IQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPE 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTSCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHHHHhCC
Confidence 344455555555555555443 3445555556678999999999999974
No 38
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=21.72 E-value=1.9e+02 Score=24.30 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCC
Q 008772 200 REPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 247 (554)
Q Consensus 200 ~~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 247 (554)
...-++.+++.+..-|+..+. ++-++.+.+.+..++..+.+....||+
T Consensus 49 ~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~~~v~~~~f~ 99 (127)
T 3r0p_A 49 FAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTDLANFPIVNEVMGQYFQ 99 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGEEEEEEEESCGGGHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 344555555666666665543 344555556667889988888888987
No 39
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=21.23 E-value=72 Score=28.66 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCCC
Q 008772 201 EPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 248 (554)
Q Consensus 201 ~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 248 (554)
..-++.+++.|..-|+.... .+-++.+.+.+..++..+.++...||+.
T Consensus 70 ~~Qt~~~l~Ni~aiL~~aG~~l~~Vvkvtvyl~d~~df~~~n~v~~~~f~~ 120 (165)
T 3lyb_A 70 LAQSWYVLESIRRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPD 120 (165)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHhcCChhHhEEEEEEECCHHHhHHHHHHHHHHcCC
Confidence 34445555555555655443 3445555566678999999999999973
No 40
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=20.82 E-value=2.6e+02 Score=21.83 Aligned_cols=84 Identities=12% Similarity=-0.020 Sum_probs=47.2
Q ss_pred CCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCCC-eEEEEEcCCCCCCCCCCHHHHHHHHHHHhHHhhcccceEEE
Q 008772 400 EGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKP-YSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYV 478 (554)
Q Consensus 400 ~GrpViv~~~~~~~~~~~d~e~ll~~vi~~Le~~~~~~-fviV~D~tg~s~~~~~~~~~lkk~~~~l~~~~p~rLk~iyi 478 (554)
.+..+++...+.++..... .+...+...+. ..+ -.+|+|+++++. .+.+-+.-+..+.. ...++=..+.+
T Consensus 11 ~~~~~vv~l~G~l~~~~~~--~l~~~l~~~~~---~~~~~~vvlDls~v~~---iDssgl~~L~~~~~-~~~~~g~~l~l 81 (110)
T 1sbo_A 11 QDDKAIVRVQGDIDAYNSS--ELKEQLRNFIS---TTSKKKIVLDLSSVSY---MDSAGLGTLVVILK-DAKINGKEFIL 81 (110)
T ss_dssp CSSEEEEEEESCBSTTTTT--HHHHHHHTHHH---HCSCSEEEEECTTCCC---BCHHHHHHHHHHHH-HHHHTTCEEEE
T ss_pred eCCEEEEEEeeEEccccHH--HHHHHHHHHHh---cCCCcEEEEECCCCcE---EccHHHHHHHHHHH-HHHHcCCEEEE
Confidence 3444555556677655443 23222222221 222 357999999864 44444443433333 33345578999
Q ss_pred EcCChhhHHHHHHh
Q 008772 479 LHPTFHLKATIFTL 492 (554)
Q Consensus 479 Vnp~~~~k~~~~~~ 492 (554)
.+++.-++..+...
T Consensus 82 ~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 82 SSLKESISRILKLT 95 (110)
T ss_dssp ESCCHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHh
Confidence 99998888777654
No 41
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=20.71 E-value=1.6e+02 Score=24.80 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCCC
Q 008772 200 REPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 248 (554)
Q Consensus 200 ~~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 248 (554)
...-++.+++.+...|+..+. .+-++.+.+.+..++..+.+....||+.
T Consensus 37 ~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 88 (124)
T 3gtz_A 37 AFEQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDAWVVA 88 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCC
Confidence 344455555555555655443 3445555566678999999999999973
No 42
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=20.59 E-value=1.3e+02 Score=25.52 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCC
Q 008772 199 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 247 (554)
Q Consensus 199 P~~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 247 (554)
...+-++.+++.+...|+..+. .+-++.+.+.+..++..+.+....||+
T Consensus 45 d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~ 96 (128)
T 1qu9_A 45 DVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFT 96 (128)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 3455555566666666666553 344444555667888888888888885
No 43
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=20.56 E-value=1.6e+02 Score=25.34 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=41.1
Q ss_pred ecccCCCCCcEE---EEEcccccCCCCCHHHHHHHHHHHhhhhcCCCeEEEEEcCCC
Q 008772 394 RGGVDSEGRPVM---VVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAA 447 (554)
Q Consensus 394 ~~G~D~~GrpVi---v~~~~~~~~~~~d~e~ll~~vi~~Le~~~~~~fviV~D~tg~ 447 (554)
..|+|..|.-++ |+-.+--.-+.++.+.+++|+-..++..+.++|.+|=+..+.
T Consensus 29 VTGvD~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~~idas~~~~f~vV~~~e~a 85 (136)
T 1c76_A 29 VTGVDGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSA 85 (136)
T ss_dssp EEEECTTCCEEECCCCEEEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEECTTC
T ss_pred EeeecCCCCEEeccccEEEecCcCceecHHHHHHHHHHHhhhhhcCceEEEecCCCc
Confidence 569999999876 222222222468999999999999999999999988776654
No 44
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=20.09 E-value=2.4e+02 Score=24.05 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhhHHHHHHHccccCCC
Q 008772 200 REPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 248 (554)
Q Consensus 200 ~~~~a~~~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 248 (554)
...-++.+++.+..-|+.... .+-++.+.+.+..++..+.+.+..||+.
T Consensus 50 ~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vyl~d~~d~~~~n~~~~~~f~~ 101 (136)
T 1qah_A 50 VAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQG 101 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccCccHHHHHHHHHHHcCC
Confidence 344555555555555655443 3444555566678999999999999963
Done!