Query 008773
Match_columns 554
No_of_seqs 312 out of 2062
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02538 2,3-bisphosphoglycera 100.0 2E-180 5E-185 1450.1 57.5 547 4-551 9-558 (558)
2 TIGR01307 pgm_bpd_ind 2,3-bisp 100.0 1E-172 3E-177 1387.1 55.2 498 16-549 1-501 (501)
3 COG0696 GpmI Phosphoglyceromut 100.0 7E-172 1E-176 1346.4 46.5 503 14-550 2-508 (509)
4 PRK05434 phosphoglyceromutase; 100.0 5E-163 1E-167 1319.7 52.6 502 13-549 2-506 (507)
5 KOG4513 Phosphoglycerate mutas 100.0 5E-146 1E-150 1112.4 43.7 521 3-549 6-530 (531)
6 PF06415 iPGM_N: BPG-independe 100.0 1.3E-85 2.9E-90 645.7 22.3 221 97-327 1-223 (223)
7 PF01676 Metalloenzyme: Metall 100.0 6E-42 1.3E-46 345.1 10.4 178 335-546 74-251 (252)
8 PRK12383 putative mutase; Prov 99.9 2.4E-22 5.3E-27 213.9 17.1 166 336-551 234-400 (406)
9 PRK04024 cofactor-independent 99.9 4E-22 8.6E-27 213.8 12.9 178 339-538 201-406 (412)
10 PRK05362 phosphopentomutase; P 99.9 2.4E-21 5.2E-26 206.1 18.2 167 335-551 223-392 (394)
11 TIGR01696 deoB phosphopentomut 99.9 3.6E-21 7.8E-26 203.3 19.2 160 335-542 216-377 (381)
12 COG3635 Predicted phosphoglyce 99.8 1.6E-19 3.5E-24 187.4 22.7 178 337-537 202-407 (408)
13 TIGR00306 apgM 2,3-bisphosphog 99.8 2.3E-20 4.9E-25 199.5 12.0 177 335-533 191-395 (396)
14 PRK04200 cofactor-independent 99.8 5.2E-19 1.1E-23 189.1 12.6 179 334-534 186-394 (395)
15 TIGR02535 hyp_Hser_kinase prop 99.8 1.5E-18 3.3E-23 185.6 12.2 178 334-533 187-395 (396)
16 COG1015 DeoB Phosphopentomutas 99.7 2.9E-16 6.2E-21 162.9 15.4 165 335-549 226-393 (397)
17 PRK04135 cofactor-independent 99.6 7.7E-16 1.7E-20 163.7 13.0 167 336-538 202-389 (395)
18 TIGR03417 chol_sulfatase choli 99.5 2.7E-13 5.9E-18 149.4 14.5 101 436-551 254-363 (500)
19 PRK13759 arylsulfatase; Provis 99.5 5.5E-13 1.2E-17 146.6 14.7 102 436-551 269-379 (485)
20 PF00884 Sulfatase: Sulfatase; 99.3 3.1E-11 6.7E-16 121.4 16.9 133 396-538 150-308 (308)
21 KOG3731 Sulfatases [Carbohydra 99.3 5.4E-12 1.2E-16 133.6 8.3 104 435-551 273-381 (541)
22 COG3119 AslA Arylsulfatase A a 99.3 1.3E-11 2.7E-16 135.6 10.5 104 435-550 260-371 (475)
23 PRK03776 phosphoglycerol trans 99.2 5.8E-10 1.3E-14 127.0 17.9 194 336-551 244-466 (762)
24 cd00016 alkPPc Alkaline phosph 99.2 3.8E-10 8.2E-15 121.0 15.4 135 398-538 232-384 (384)
25 PRK12363 phosphoglycerol trans 99.1 2E-09 4.3E-14 122.3 17.9 189 336-550 240-457 (703)
26 PRK11598 putative metal depend 98.9 8.7E-08 1.9E-12 107.0 18.7 107 435-550 418-539 (545)
27 PRK10649 hypothetical protein; 98.8 3E-08 6.5E-13 111.6 14.4 106 435-550 427-543 (577)
28 PRK09598 lipid A phosphoethano 98.8 7E-08 1.5E-12 107.4 16.7 102 435-544 404-509 (522)
29 PRK11560 phosphoethanolamine t 98.8 8.4E-08 1.8E-12 107.3 16.6 189 335-542 318-542 (558)
30 COG3083 Predicted hydrolase of 98.6 2.3E-07 4.9E-12 100.5 12.7 128 406-551 385-535 (600)
31 KOG3867 Sulfatase [General fun 98.6 7.5E-08 1.6E-12 106.2 8.5 111 434-551 268-388 (528)
32 KOG2126 Glycosylphosphatidylin 98.6 2.1E-07 4.6E-12 106.0 11.6 180 335-546 143-325 (895)
33 KOG2125 Glycosylphosphatidylin 98.6 8.6E-08 1.9E-12 106.7 7.1 119 410-546 187-314 (760)
34 PF01663 Phosphodiest: Type I 98.3 8.8E-07 1.9E-11 91.9 6.2 70 404-473 173-248 (365)
35 PRK10518 alkaline phosphatase; 98.3 7.5E-06 1.6E-10 89.9 13.3 135 398-539 325-476 (476)
36 TIGR02335 hydr_PhnA phosphonoa 98.2 1.3E-05 2.7E-10 87.0 13.9 65 402-472 176-242 (408)
37 KOG2645 Type I phosphodiestera 98.2 7.4E-06 1.6E-10 88.6 9.5 106 358-473 126-239 (418)
38 COG1368 MdoB Phosphoglycerol t 98.0 3.2E-05 6.9E-10 88.6 12.6 192 334-546 341-561 (650)
39 TIGR03397 acid_phos_Burk acid 98.0 5.2E-05 1.1E-09 83.4 13.4 115 406-541 335-455 (483)
40 COG1785 PhoA Alkaline phosphat 97.7 0.00078 1.7E-08 73.9 14.3 73 398-470 281-355 (482)
41 smart00098 alkPPc Alkaline pho 97.5 0.00041 8.9E-09 75.5 9.5 74 398-471 235-310 (419)
42 PF00245 Alk_phosphatase: Alka 97.1 0.00047 1E-08 75.2 4.6 74 398-471 238-313 (421)
43 COG1524 Uncharacterized protei 96.9 0.0006 1.3E-08 74.6 3.7 60 412-471 215-280 (450)
44 PF08665 PglZ: PglZ domain; I 96.9 0.0022 4.7E-08 61.9 7.0 59 413-471 110-175 (181)
45 KOG2124 Glycosylphosphatidylin 96.6 0.0034 7.4E-08 72.5 6.6 116 416-546 199-331 (883)
46 PRK04135 cofactor-independent 96.4 0.0052 1.1E-07 66.4 5.7 64 12-84 4-69 (395)
47 TIGR02687 conserved hypothetic 96.2 0.0081 1.8E-07 70.9 6.7 57 413-471 568-629 (844)
48 KOG4126 Alkaline phosphatase [ 96.1 0.026 5.6E-07 62.2 9.3 102 398-506 326-431 (529)
49 TIGR02535 hyp_Hser_kinase prop 95.8 0.012 2.5E-07 64.0 5.0 59 17-84 2-63 (396)
50 PRK04200 cofactor-independent 95.6 0.014 3E-07 63.4 4.9 59 17-84 2-63 (395)
51 PRK04024 cofactor-independent 95.1 0.028 6E-07 61.4 5.2 59 17-84 4-65 (412)
52 TIGR00306 apgM 2,3-bisphosphog 94.2 0.041 8.9E-07 59.8 3.8 57 19-84 1-60 (396)
53 COG2194 Predicted membrane-ass 90.3 0.58 1.3E-05 53.1 6.6 100 435-541 419-530 (555)
54 PF07394 DUF1501: Protein of u 89.9 2.1 4.5E-05 46.1 10.3 113 413-541 244-368 (392)
55 cd01455 vWA_F11C1-5a_type Von 86.5 2.2 4.7E-05 42.1 7.0 76 123-226 111-187 (191)
56 PF04185 Phosphoesterase: Phos 85.9 6.1 0.00013 42.5 10.8 119 406-539 246-376 (376)
57 COG2861 Uncharacterized protei 83.0 3.7 8E-05 41.9 6.9 159 14-187 26-206 (250)
58 COG3379 Uncharacterized conser 82.0 0.87 1.9E-05 49.4 2.3 28 523-550 439-468 (471)
59 PF02995 DUF229: Protein of un 80.7 7.5 0.00016 43.6 9.2 32 440-471 310-345 (497)
60 PF01261 AP_endonuc_2: Xylose 78.4 9.5 0.00021 36.0 8.0 81 140-225 27-118 (213)
61 cd01453 vWA_transcription_fact 73.8 13 0.00028 35.9 7.5 72 124-225 108-179 (183)
62 PRK09453 phosphodiesterase; Pr 68.7 15 0.00032 35.1 6.6 68 127-202 3-72 (182)
63 TIGR03396 PC_PLC phospholipase 63.8 1.2E+02 0.0026 35.7 13.8 131 402-542 273-430 (690)
64 smart00518 AP2Ec AP endonuclea 62.5 26 0.00057 35.3 7.5 81 138-225 43-128 (273)
65 PF01261 AP_endonuc_2: Xylose 60.8 23 0.00051 33.3 6.4 61 139-204 70-136 (213)
66 cd01467 vWA_BatA_type VWA BatA 55.8 31 0.00066 32.2 6.2 56 111-169 88-145 (180)
67 PRK09856 fructoselysine 3-epim 53.6 24 0.00052 35.6 5.4 55 138-197 88-146 (275)
68 COG3379 Uncharacterized conser 52.7 34 0.00073 37.7 6.4 60 412-471 189-265 (471)
69 PRK13685 hypothetical protein; 49.9 53 0.0011 34.6 7.4 79 125-227 196-289 (326)
70 TIGR02335 hydr_PhnA phosphonoa 48.8 12 0.00025 41.1 2.4 35 15-51 12-46 (408)
71 PRK06552 keto-hydroxyglutarate 45.9 93 0.002 31.1 8.1 121 81-225 67-206 (213)
72 PRK01060 endonuclease IV; Prov 45.8 78 0.0017 32.0 7.7 80 138-222 45-131 (281)
73 TIGR03417 chol_sulfatase choli 43.4 25 0.00054 39.3 4.0 32 18-51 5-38 (500)
74 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.5 1.2E+02 0.0027 31.2 8.6 54 123-187 107-161 (275)
75 TIGR03436 acidobact_VWFA VWFA- 41.5 92 0.002 31.9 7.6 37 126-165 167-203 (296)
76 PF03279 Lip_A_acyltrans: Bact 41.2 1.1E+02 0.0024 31.4 8.1 124 61-187 118-282 (295)
77 COG2515 Acd 1-aminocyclopropan 41.1 29 0.00063 36.8 3.7 34 129-167 67-100 (323)
78 cd01465 vWA_subgroup VWA subgr 40.2 1E+02 0.0022 28.2 7.0 39 124-166 98-139 (170)
79 PF13768 VWA_3: von Willebrand 38.9 67 0.0014 29.3 5.5 137 19-180 3-145 (155)
80 PF05827 ATP-synt_S1: Vacuolar 38.9 43 0.00094 34.4 4.6 50 414-468 127-177 (282)
81 PF13519 VWA_2: von Willebrand 38.6 1.7E+02 0.0037 26.2 8.2 74 123-224 99-172 (172)
82 cd07388 MPP_Tt1561 Thermus the 38.1 1.4E+02 0.0031 30.0 8.1 36 123-161 3-38 (224)
83 PRK07114 keto-hydroxyglutarate 37.5 70 0.0015 32.3 5.7 120 80-224 69-212 (222)
84 PRK13125 trpA tryptophan synth 35.3 1.9E+02 0.0041 29.2 8.5 98 61-187 31-128 (244)
85 COG1082 IolE Sugar phosphate i 34.6 1.7E+02 0.0038 29.0 8.2 65 123-187 60-138 (274)
86 PF04309 G3P_antiterm: Glycero 33.9 31 0.00068 33.6 2.5 75 137-227 28-116 (175)
87 COG1015 DeoB Phosphopentomutas 33.7 39 0.00085 36.7 3.3 39 16-54 2-40 (397)
88 PRK12383 putative mutase; Prov 33.6 38 0.00083 37.3 3.4 129 16-180 2-148 (406)
89 cd00198 vWFA Von Willebrand fa 31.6 1E+02 0.0022 26.9 5.3 54 110-166 84-141 (161)
90 cd02685 MIT_C MIT_C; domain fo 31.4 1E+02 0.0022 29.4 5.4 51 137-187 33-83 (148)
91 cd00019 AP2Ec AP endonuclease 29.9 81 0.0018 31.9 4.9 26 138-163 83-108 (279)
92 cd04501 SGNH_hydrolase_like_4 29.8 2.8E+02 0.006 25.7 8.2 58 400-465 45-102 (183)
93 PRK13209 L-xylulose 5-phosphat 29.6 1.1E+02 0.0024 30.9 5.8 26 138-163 97-122 (283)
94 PRK00994 F420-dependent methyl 29.4 68 0.0015 33.0 4.0 75 394-468 40-119 (277)
95 PTZ00445 p36-lilke protein; Pr 28.9 83 0.0018 31.8 4.6 71 398-468 26-102 (219)
96 cd01477 vWA_F09G8-8_type VWA F 28.9 1.3E+02 0.0029 29.3 6.0 44 123-169 131-174 (193)
97 cd01465 vWA_subgroup VWA subgr 28.8 2E+02 0.0043 26.2 6.9 14 157-170 98-111 (170)
98 PRK13759 arylsulfatase; Provis 28.7 36 0.00078 37.9 2.2 32 18-51 9-41 (485)
99 TIGR01182 eda Entner-Doudoroff 28.5 1.4E+02 0.003 29.8 6.1 117 81-223 59-199 (204)
100 COG1954 GlpP Glycerol-3-phosph 27.9 63 0.0014 31.6 3.4 72 137-225 32-118 (181)
101 PRK13753 dihydropteroate synth 27.8 3.1E+02 0.0067 28.8 8.7 65 124-188 2-73 (279)
102 TIGR01696 deoB phosphopentomut 26.0 64 0.0014 35.2 3.5 37 17-53 1-37 (381)
103 cd03770 SR_TndX_transposase Se 26.0 2.8E+02 0.006 25.3 7.3 26 141-169 86-112 (140)
104 TIGR00853 pts-lac PTS system, 25.9 1.8E+02 0.0038 25.3 5.6 76 125-209 5-91 (95)
105 PRK05362 phosphopentomutase; P 25.3 69 0.0015 35.1 3.6 36 16-51 2-37 (394)
106 PF05991 NYN_YacP: YacP-like N 25.2 46 0.001 31.8 2.0 29 442-470 77-106 (166)
107 PF07555 NAGidase: beta-N-acet 24.1 2.6E+02 0.0056 29.6 7.5 52 138-192 54-105 (306)
108 PRK11613 folP dihydropteroate 23.5 3.3E+02 0.0071 28.6 8.0 65 123-187 14-85 (282)
109 cd01454 vWA_norD_type norD typ 23.5 3.3E+02 0.0071 25.4 7.4 67 110-180 88-165 (174)
110 PRK06886 hypothetical protein; 23.3 9.2E+02 0.02 25.7 12.1 74 139-226 161-234 (329)
111 cd01460 vWA_midasin VWA_Midasi 22.4 1.1E+02 0.0023 31.8 4.2 40 124-165 165-204 (266)
112 KOG4146 Ubiquitin-like protein 21.6 1.5E+02 0.0033 26.1 4.2 51 227-279 32-95 (101)
113 TIGR00542 hxl6Piso_put hexulos 21.5 2.6E+02 0.0057 28.2 6.8 51 138-197 92-150 (279)
114 cd01454 vWA_norD_type norD typ 21.3 2.5E+02 0.0055 26.1 6.2 15 158-172 106-120 (174)
115 PRK14829 undecaprenyl pyrophos 20.8 3.1E+02 0.0068 28.1 7.1 59 139-203 44-110 (243)
116 cd00984 DnaB_C DnaB helicase C 20.7 5.3E+02 0.012 25.1 8.6 65 397-466 106-170 (242)
117 TIGR02635 RhaI_grampos L-rhamn 20.6 2.7E+02 0.0059 30.4 6.9 72 138-216 114-194 (378)
118 cd00019 AP2Ec AP endonuclease 20.4 3.7E+02 0.0081 27.1 7.6 81 139-225 44-129 (279)
119 cd01829 SGNH_hydrolase_peri2 S 20.4 3.6E+02 0.0077 25.3 7.1 62 406-467 51-116 (200)
120 PTZ00441 sporozoite surface pr 20.3 6.4E+02 0.014 29.3 10.0 60 104-165 125-189 (576)
121 PRK01060 endonuclease IV; Prov 20.2 3.5E+02 0.0075 27.3 7.4 24 138-161 87-110 (281)
122 cd01480 vWA_collagen_alpha_1-V 20.2 2.4E+02 0.0051 26.8 5.8 11 19-29 5-15 (186)
123 PRK12677 xylose isomerase; Pro 20.1 4.1E+02 0.0088 29.0 8.2 79 141-224 68-162 (384)
No 1
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=100.00 E-value=2.3e-180 Score=1450.09 Aligned_cols=547 Identities=83% Similarity=1.321 Sum_probs=503.1
Q ss_pred CccccCCCCCCCCcEEEEEEeccCCCCCCCCCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCC-CCCcchhhhc
Q 008773 4 WKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTED-DMGNSEVGHN 82 (554)
Q Consensus 4 ~~~~~~~~~~~~~~~~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~g-qmGNSEVGH~ 82 (554)
|.++.++.+++++|||||||||||++++.++|||++|+||+||+|+++||+.+++|+|||++|||| +| ||||||||||
T Consensus 9 ~~~~~~~~~~~~~pv~LiILDGwG~~~~~~~NAi~~A~tP~~D~l~~~~p~~~~~l~AsG~~VGLP-~~~qmGNSEVGHl 87 (558)
T PLN02538 9 WKLAPHPKIPKGKPLLLIVLDGWGENAPDEFNAIHVAPTPTMDSLKAGAPERWRLVKAHGTAVGLP-SDDDMGNSEVGHN 87 (558)
T ss_pred ccccCCCCCCCCCCEEEEEecCCCCCCCCCCCHhhhcCCCCHHHHHHhCCCCCceEEECCCcCCCC-CCCCCcchHHhhh
Confidence 788999988888899999999999999999999999999999999999994227999999999999 65 5999999999
Q ss_pred ccCCccccccchHHHHHHHhcCCCcCchhHhhhhhhcCCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEe
Q 008773 83 ALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHIL 162 (554)
Q Consensus 83 ~iGaGRvv~q~~~ri~~~i~~g~~~~n~~~~~~~~~~~~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~ 162 (554)
||||||||+|+++|||+||++|+||+|++|+++++.+++++|||||||||||||||++||+||+++|+++|+++||||+|
T Consensus 88 niGaGRiv~Q~l~rI~~ai~~g~~~~n~~l~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f 167 (558)
T PLN02538 88 ALGAGRIFAQGAKLVDLALASGKIFEGEGFKYIKEAFATGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHVL 167 (558)
T ss_pred hhccceeecchhHHHHHHHhcCCcccCHHHHHHHHHhcCCeeEEEEeccCCCcccHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 99999999999999999999999999999999999886679999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHH
Q 008773 163 TDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKK 242 (554)
Q Consensus 163 ~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~rw~r~~~ay~~~~~g~~~~~~~~~~~~i~~ 242 (554)
+|||||+|+||++||++|+++|++++.+|+.|+||||+||||.||||||+|||||++||++||.|+|+..+.|+.+||++
T Consensus 168 ~DGRDt~p~S~~~yl~~l~~~l~~~~~~g~~g~iAsv~GR~yyaMDR~d~rW~rv~~ay~alv~g~~~~~~~~~~~ai~~ 247 (558)
T PLN02538 168 TDGRDVPDGSSVGFVETLEKDLAELREKGCDARIASGGGRMYVTMDRYENDWNVVKRGWDAHVLGEAPHKFKSALEAVKK 247 (558)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHhhcCCCcEEEEEEeCCceeecccccccHHHHHHHHHHHhcCCCccccCCHHHHHHH
Confidence 99999999999999999999999875445424999999994339999999999999999999999995478999999999
Q ss_pred HHcCCC-CCCCCCCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEEeeeecCCC
Q 008773 243 LREQPN-ANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGEL 321 (554)
Q Consensus 243 ~y~~~~-~~Defi~P~~~~~~~~~~~~~i~~~D~vif~NfR~DR~rql~~a~~~~~f~~f~~~~~~~~~~~~mt~Y~~~~ 321 (554)
+|++|. +|||||+|++|.+.+|+|.++|+|||+|||||||+|||||||+||++++|++|+|...|++.|+|||+|++++
T Consensus 248 ~y~~g~~~tDEfi~P~vi~~~~g~~~~~i~dgD~ViffNFR~DRarqit~a~~~~~f~~f~r~~~p~~~~~~mt~Yd~~~ 327 (558)
T PLN02538 248 LREEPPPANDQYLPPFVIVDEDGKPVGPIEDGDAVVTFNFRADRMVMIAKALEYEDFDKFDRVRVPKIRYAGMLQYDGEL 327 (558)
T ss_pred HHhCCCCCCCCcCCCeEEecCCCCCcccccCCCEEEEecCCChHHHHHHHHhcccCCcccCcCCCCCcEEEeCeEecccC
Confidence 999953 5999999999987567888899999999999999999999999999999999999888889999999999999
Q ss_pred CCcccccCCCCcccccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHH
Q 008773 322 KLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALE 401 (554)
Q Consensus 322 ~~~v~fl~~~~~~~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~ 401 (554)
++|++|||||++++|||+|||+++|++|+||||||||+|||||||||+|.+|+.++|+|+++|||+|+|||++||||+.+
T Consensus 328 ~~p~~~~f~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~e~e~~i~ipsp~v~tyd~~PeMSA~e 407 (558)
T PLN02538 328 KLPSHYLVSPPLIERTSGEYLVANGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDNGIPFNVQPKMKALE 407 (558)
T ss_pred CCcceEeeCCCcCCCCHHHHHHhCCCceEEeecccccceeEEeecCCccccCCCCCceEEECCCCCCCCcccCCCCCHHH
Confidence 99977777999999999999999999999999999999999999999999994337899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCC
Q 008773 402 IAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSG 481 (554)
Q Consensus 402 vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G 481 (554)
|+++++++|++++|||+++||+|+|||||+|+++++++|||++|+||++|++++++.|+++||||||||+|.|.+.+++|
T Consensus 408 Vtd~~i~~i~~~~ydfi~vNfan~DmvGHtG~~ea~ikAIE~vD~~Lg~Il~al~~~g~~liITADHGNaE~M~d~~~~G 487 (558)
T PLN02538 408 IAEKARDALLSGKFDQVRVNLANGDMVGHTGDLEATIVACEAVDAAVKEILDAVEQVGGIYLVTADHGNAEDMVKRDKSG 487 (558)
T ss_pred HHHHHHHHHhcCCCCEEEEeccCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCCchhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999998544566
Q ss_pred CCcc-cCCCccccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCCCcccc
Q 008773 482 EPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIEV 551 (554)
Q Consensus 482 ~~~~-~~g~~~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~GSLl~~ 551 (554)
.|.. .+|+|.|+|.||++|||||+++++.+++..+++.+...+|+|||||||++||+++|.+|+|||+++
T Consensus 488 ~p~~~~~Gtp~~~t~HT~npVP~Ii~g~~~~~~~~l~~~l~~~gLaDVApTIL~lLGl~~P~emt~sl~~~ 558 (558)
T PLN02538 488 KPLLDKDGNPQILTSHTLAPVPVAIGGPGLPPGVRFRDDLPTAGLANVAATVMNLHGFEAPADYEPSLIEV 558 (558)
T ss_pred CccccccCCCCCCCCCCCCCcCEEEEeCCcccCcccccCccCCcHHhHHHHHHHHhCCCCchhcCcchhcC
Confidence 5544 467777899999999999999987643323332111235999999999999999999999999864
No 2
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=100.00 E-value=1.2e-172 Score=1387.05 Aligned_cols=498 Identities=40% Similarity=0.659 Sum_probs=473.1
Q ss_pred CcEEEEEEeccCCCCCCCCCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCccccccchH
Q 008773 16 NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAK 95 (554)
Q Consensus 16 ~~~~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~iGaGRvv~q~~~ 95 (554)
+||+||||||||+++++++|||++|+||+||+|+++||+ ++|+|||++|||| +|||||||||||||||||||||+|+
T Consensus 1 ~p~~L~IlDG~G~~~~~~~nai~~A~tP~~d~l~~~~p~--~~l~asG~~VGLP-~gqmGNSEVGH~~iGaGRiv~q~~~ 77 (501)
T TIGR01307 1 KKVVLVILDGWGYRNDDDGNAIFAAKTPTMDELIAAYPY--SLLDASGLDVGLP-DGQMGNSEVGHLNIGAGRVVYQDLV 77 (501)
T ss_pred CCEEEEEecCCCCCCCCCCCHHHhcCCCcHHHHHHhCCC--eEeeeCCcccCCC-CCCCCchHHHHhhcCCCceeccchH
Confidence 589999999999999999999999999999999999999 9999999999999 9999999999999999999999999
Q ss_pred HHHHHHhcCCCcCchhHhhhhhhc-C-CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCch
Q 008773 96 LVDLALASGKIYQDEGFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSS 173 (554)
Q Consensus 96 ri~~~i~~g~~~~n~~~~~~~~~~-~-~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~ 173 (554)
|||+||++|+|++||+|+++++.+ + +++|||||||||||||||+|||+||+++|+++|+++||||+|+|||||+|+||
T Consensus 78 ri~~ai~~g~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~ 157 (501)
T TIGR01307 78 RISQAIKDGEFFANPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSA 157 (501)
T ss_pred HHHHHHhcCCcccCHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhH
Confidence 999999999999999999999999 4 46999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCC
Q 008773 174 VGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQY 253 (554)
Q Consensus 174 ~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~rw~r~~~ay~~~~~g~~~~~~~~~~~~i~~~y~~~~~~Def 253 (554)
++||++|+++|+++ |+ |+||||+|||| |||| |||||||++||++||.|+|+ .+.||.+||+++|++ ++||||
T Consensus 158 ~~~~~~l~~~~~~~---~~-~~iasv~GRyy-aMDR-d~rw~rv~~ay~~~~~g~~~-~~~~~~~ai~~~y~~-~~~Def 229 (501)
T TIGR01307 158 ESYLEQLQAFLKEI---GN-GRIATISGRYY-AMDR-DQRWDRVEIAYKAITGGDGF-EFSDPVAYIQDAYAR-DITDEF 229 (501)
T ss_pred HHHHHHHHHHHHHh---CC-EEEEEEeCcce-eecC-ccchHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhC-CCCCCC
Confidence 99999999999987 77 49999999999 9999 99999999999999999995 789999999999999 589999
Q ss_pred CCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEEeeeecCCCCCcccccCCCCc
Q 008773 254 LPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE 333 (554)
Q Consensus 254 i~P~~~~~~~~~~~~~i~~~D~vif~NfR~DR~rql~~a~~~~~f~~f~~~~~~~~~~~~mt~Y~~~~~~~v~fl~~~~~ 333 (554)
|+|++|.+ + ++|+|||+|||||||+|||||||+||.+++|++|+|...|++.|+|||+|++++++|++| ||++
T Consensus 230 i~p~vi~~--~---~~i~dgD~vif~NfR~DRarqi~~a~~~~~f~~f~r~~~~~~~~~~mt~Y~~~~~~~v~f--~~~~ 302 (501)
T TIGR01307 230 IKPTIIGN--G---GALKDGDAVIFFNFRADRAREITRALVNSDFDGFPREKNPKLDFVTMTQYDGTFPSPVAF--PPQS 302 (501)
T ss_pred CCCeEecC--C---CcccCCCEEEEecCCChHHHHHHHHhcCCCCCcCCcCCCCCceEEEeEEecCCCCCceec--CCCC
Confidence 99999963 2 479999999999999999999999999999999999888889999999999999999988 9999
Q ss_pred ccccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhC
Q 008773 334 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR 413 (554)
Q Consensus 334 ~~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~~~ 413 (554)
+.|||+|||+++|++|+||||||||+|||||||||+|.+| ++|+|.++|||+|+|||++|+|++++++++++++|+++
T Consensus 303 ~~n~lge~ls~~g~~qlriaETeKyaHVTfFfnGg~e~~f--~ge~r~lv~sp~v~tyd~~PeMsa~evtd~~i~~I~~~ 380 (501)
T TIGR01307 303 LTNTLGEVLAKHDLTQLRIAETEKYAHVTFFFNGGVEVPF--AGETRTLIPSPKVATYDLQPEMSAKAVTDAVLEAIAQG 380 (501)
T ss_pred CCCCHHHHHHHCCCcEEEEeeccccceeeeeecCCccccC--CCceeEEeCCCCCCccccCCccCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCcccc
Q 008773 414 RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVL 493 (554)
Q Consensus 414 ~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~ 493 (554)
+|||+++||+++||+||++++++++++||++|+|||+|+++|++.|.+|||||||||+|.|. + ..|+ |+
T Consensus 381 k~dfi~vnfan~DmvGHtg~~~a~v~AIE~vD~~LGrIl~aLke~G~~VIiTADHGnae~m~--d-------~~g~--p~ 449 (501)
T TIGR01307 381 KFDLIVVNFANPDMVGHTGNFEAAIKAVEALDVCLGRIVEACKKVGGTLFLTADHGNAEEMI--D-------ENGN--PH 449 (501)
T ss_pred CCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCChhhcc--C-------CCCC--cc
Confidence 99999999999999999999999999999999999999999999999999999999999885 3 2343 58
Q ss_pred ccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Ccc
Q 008773 494 TSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLI 549 (554)
Q Consensus 494 t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl 549 (554)
+.||+++||||+++|+.. ....+ .++|+|||||||++||+++|++|+| ||+
T Consensus 450 t~HT~~~VP~Ii~~p~~i--~~~~~---~~sL~DIaPTiLdL~Gi~~P~emdG~SLl 501 (501)
T TIGR01307 450 TAHTTNPVPFVCVGAKNV--KLIRE---GGVLADIAPTILDLMGLEQPAEMTGKSLL 501 (501)
T ss_pred cCCCCeEeeEEEEECCcc--cccCC---CceEhHHHHHHHHHhCcCCCCCCCCccCC
Confidence 999999999999998421 11222 4679999999999999999999999 875
No 3
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-172 Score=1346.36 Aligned_cols=503 Identities=42% Similarity=0.682 Sum_probs=478.3
Q ss_pred CCCcEEEEEEeccCCCCCCCCCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCccccccc
Q 008773 14 RNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQG 93 (554)
Q Consensus 14 ~~~~~~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~iGaGRvv~q~ 93 (554)
+++||+|+||||||++++.++|||++|+||++|+|+++||| ++|+|||++|||| +||||||||||+||||||||||+
T Consensus 2 ~~k~~~LiIlDG~G~~~~~~~NAv~~A~tP~~d~l~~~~P~--~~l~aSG~~VGLP-~GQmGNSEVGHlnIGAGRivyq~ 78 (509)
T COG0696 2 MKKPVVLIILDGWGYREETEGNAVALAKTPTMDALLNNYPH--TLLKASGLAVGLP-EGQMGNSEVGHLNIGAGRIVYQD 78 (509)
T ss_pred CCCcEEEEEecCCCCCcccccCHHHhcCCchHHHHHHhCCc--hhhhccccccCCC-CCcccCccccceeeecceEeecc
Confidence 57899999999999999999999999999999999999999 9999999999999 99999999999999999999999
Q ss_pred hHHHHHHHhcCCCcCchhHhhhhhhc-CC-CceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCC
Q 008773 94 AKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG 171 (554)
Q Consensus 94 ~~ri~~~i~~g~~~~n~~~~~~~~~~-~~-~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~ 171 (554)
|+|||++|++|+|++|++|..+++.+ ++ ++||||||+||||||||+|||+||+++|+++|+++||+|+|+|||||+|+
T Consensus 79 l~rI~~aie~g~f~~n~~l~~~~~~v~~~~~~lHlmGl~S~GGVHSh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~ 158 (509)
T COG0696 79 LTRIDKAIEDGSFFENPALLNAIDEVKANGSALHLMGLVSDGGVHSHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPR 158 (509)
T ss_pred cchhhhhhhcCcccccHHHHHHHHHhhhcCceEEEEecccCCcccchHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCch
Confidence 99999999999999999999999999 55 59999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCC
Q 008773 172 SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAND 251 (554)
Q Consensus 172 s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~rw~r~~~ay~~~~~g~~~~~~~~~~~~i~~~y~~~~~~D 251 (554)
|++.||++|+++++++ |.+ +|||++|||| |||| ||||||||+||++|+.++++.++.+|+++++++|++ ++||
T Consensus 159 s~~~~le~l~~~~~~~---g~~-~iasi~GRYY-aMDR-D~rWdRve~Ay~a~~~~~~~~~~~~~~~~~~~~Y~~-~~tD 231 (509)
T COG0696 159 SALQYLEELEAKAKEY---GNG-RIASISGRYY-AMDR-DNRWDRVEKAYDALTYGEGEFTANSAVEAVQASYAR-GITD 231 (509)
T ss_pred hHHHHHHHHHHHhhcc---Cce-EEEEEeeeee-cccc-ccchHHHHHHHHHHHccccccccCCHHHHHHHHHhc-CCCc
Confidence 9999999999999998 774 9999999999 9999 999999999999999999866899999999999999 5899
Q ss_pred CCCCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccC-CCCCeeEEEeeeecCCCCCcccccCC
Q 008773 252 QYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRV-RFPKIRYAGMLQYDGELKLPSHYLVS 330 (554)
Q Consensus 252 efi~P~~~~~~~~~~~~~i~~~D~vif~NfR~DR~rql~~a~~~~~f~~f~~~-~~~~~~~~~mt~Y~~~~~~~v~fl~~ 330 (554)
|||.|++|.+ .|.+.|+|||+|||||||+||||||+++|+.++|++|.|. ++|+..|+|||+|+++++.+|+| |
T Consensus 232 EFv~p~~i~~---~~~~~i~d~DsvIf~NFR~DRarQl~~~l~~~~f~gF~r~~~~~~~~~vtmt~Y~~~~~~~vaF--~ 306 (509)
T COG0696 232 EFVKPTVIYG---EPVAAIEDGDSVIFFNFRPDRARQLTRALTNDDFDGFSRDKKVPKNDFVTMTEYDGSDPLPVAF--P 306 (509)
T ss_pred ccccceeecC---cccccccCCCeEEEeccChhHHHHHHHHhccccccccCcccccccCceEEEEecCCCCCcceec--c
Confidence 9999999964 3677999999999999999999999999999999999995 34555799999999999999988 9
Q ss_pred CCcccccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHH
Q 008773 331 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI 410 (554)
Q Consensus 331 ~~~~~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I 410 (554)
|.++.|||+||++++|++|+||||||||||||||||||+|++| ++|+|+++|||+|+|||++||||+.++|+++++.|
T Consensus 307 p~~i~NtlgEv~~~~gl~QlRiAETEKYAHVTfFfnGG~E~~~--~~e~r~li~SpkVaTYDl~PEMSa~evtd~~~~~i 384 (509)
T COG0696 307 PENLKNTLGEVLSKHGLTQLRIAETEKYAHVTFFFNGGVEEPF--KGEDRILIPSPKVATYDLKPEMSAKEVTDALVEAI 384 (509)
T ss_pred cccccccHHHHHHhcCchhhhhhhhccccceEEEecCcccccc--CCCccEeccCCCccccccCcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCc
Q 008773 411 LSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNI 490 (554)
Q Consensus 411 ~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~ 490 (554)
++++||++++||+|+|||||||+++++++|||++|.|||++++++++.|+.++|||||||+|+|. | +.|+
T Consensus 385 ~~g~~D~iV~N~ANpDMVGHTG~~eatiKAvEavD~~lg~ivd~~~~~gg~~~iTaDHGNaE~m~--d-------~~g~- 454 (509)
T COG0696 385 EKGKYDLIVLNYANPDMVGHTGNFEATIKAVEAVDECLGRIVDAVKKNGGTLLITADHGNAEQMS--D-------PAGN- 454 (509)
T ss_pred hCCCCCEEEEecCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeecCcchhhcc--C-------CCCC-
Confidence 99999999999999999999999999999999999999999999999999999999999999997 4 3344
Q ss_pred cccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Cccc
Q 008773 491 QVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIE 550 (554)
Q Consensus 491 ~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl~ 550 (554)
|||+||++|||||+.++. +...++ .+.|+|||||||++||+++|.+|+| ||+.
T Consensus 455 -p~TaHT~npVp~i~~~~~---~v~~~~---~g~LadiAPTiL~llg~~~P~eMtgksl~~ 508 (509)
T COG0696 455 -PHTAHTTNPVPVIYTGKK---GVKARK---SGKLADIAPTILDLLGLEIPAEMTGKSLII 508 (509)
T ss_pred -ceeccccCCccEEEEcCC---cceeee---ccchhhhhHHHHHHcCCCcchhhccccccc
Confidence 699999999999999832 334443 4889999999999999999999999 9874
No 4
>PRK05434 phosphoglyceromutase; Provisional
Probab=100.00 E-value=4.7e-163 Score=1319.72 Aligned_cols=502 Identities=43% Similarity=0.706 Sum_probs=473.3
Q ss_pred CCCCcEEEEEEeccCCCCCCCCCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCcccccc
Q 008773 13 SRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQ 92 (554)
Q Consensus 13 ~~~~~~~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~iGaGRvv~q 92 (554)
++++|||||||||||+++++++|||++|+||+||+|+++||+ ++|+|||++|||| +|||||||||||||||||||+|
T Consensus 2 ~~~~~~~L~IlDG~G~~~~~~~nai~~A~tp~~d~l~~~~p~--~~l~a~g~~VGLP-~gqmGNSEVGH~~iGaGriv~q 78 (507)
T PRK05434 2 MMKKPVVLIILDGWGYREETEGNAIALAKTPNLDRLWANYPH--TLLSASGLAVGLP-DGQMGNSEVGHLNIGAGRIVYQ 78 (507)
T ss_pred CCCCcEEEEEecCCCCCCCCCCCHHHhcCCCcHHHHHHhCCC--eEeecCCcccCCC-CCCccchHHhHhhcCCCceecc
Confidence 357899999999999999999999999999999999999999 9999999999999 9999999999999999999999
Q ss_pred chHHHHHHHhcCCCcCchhHhhhhhhc-CC-CceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCC
Q 008773 93 GAKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLD 170 (554)
Q Consensus 93 ~~~ri~~~i~~g~~~~n~~~~~~~~~~-~~-~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p 170 (554)
+|+|||+||++|+|++|++|+++++.+ ++ ++|||||||||||||||++||++|+++|+++|+++|+||+|+|||||+|
T Consensus 79 ~~~~i~~ai~~g~~~~n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p 158 (507)
T PRK05434 79 DLTRINKAIEDGSFFENPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPP 158 (507)
T ss_pred chHHHHHHHhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCc
Confidence 999999999999999999999999999 44 6999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCC
Q 008773 171 GSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN 250 (554)
Q Consensus 171 ~s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~rw~r~~~ay~~~~~g~~~~~~~~~~~~i~~~y~~~~~~ 250 (554)
+||++||++|+++|+++ |+ |+||||+|||| |||| |+|||||++||++||.|+|+..+.||.+||+++|++ ++|
T Consensus 159 ~s~~~~i~~l~~~~~~~---~~-~~iasv~GRyy-amDR-d~rw~rv~~a~~~~~~g~~~~~~~~~~~~i~~~y~~-~~~ 231 (507)
T PRK05434 159 KSALGYLEELEAKLAEL---GV-GRIASVSGRYY-AMDR-DKRWDRVEKAYDALVLGEGPFTAESAVEALEASYAR-GET 231 (507)
T ss_pred hhHHHHHHHHHHHHHHh---CC-eeEEEEecccc-cccc-ccchHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHhC-CCC
Confidence 99999999999999998 77 49999999999 9999 999999999999999999964579999999999999 589
Q ss_pred CCCCCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEEeeeecCCCCCcccccCC
Q 008773 251 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVS 330 (554)
Q Consensus 251 Defi~P~~~~~~~~~~~~~i~~~D~vif~NfR~DR~rql~~a~~~~~f~~f~~~~~~~~~~~~mt~Y~~~~~~~v~fl~~ 330 (554)
||||+|+||. +.|.++|+|||+|||||||+|||||||+||.+++|++|+| ..|++.|+|||+|++++++|++| |
T Consensus 232 Defi~p~vi~---~~~~~~i~d~D~vif~NfR~DRa~qi~~a~~~~~f~~f~~-~~~~~~~~~m~~Y~~~~~~~~~f--~ 305 (507)
T PRK05434 232 DEFVKPTVIG---GEPVAGIEDGDAVIFFNFRADRARQITRAFTDPDFDGFDR-VPKLLNFVTMTQYDADLKVPVAF--P 305 (507)
T ss_pred CCCCCCEEec---CCCcCcccCCCEEEEeccCChHHHHHHHHhcCcCcccCCC-CCCCceEEEceEccCCCCCceec--C
Confidence 9999999996 3567899999999999999999999999999999999999 35678899999999999999988 9
Q ss_pred CCcccccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHH
Q 008773 331 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI 410 (554)
Q Consensus 331 ~~~~~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I 410 (554)
|+++.|+++|+|+++|++|+|++|+|||+|+||||+||++.+| ++|+|+++|+|++++||++|+|++.+++++++++|
T Consensus 306 ~~~~~~~l~e~L~~~gl~q~R~aEtek~ahvt~f~~GG~~~~~--~~e~r~~~~s~~va~yd~~p~Ms~~e~~d~~i~~l 383 (507)
T PRK05434 306 PESLKNTLGEVLAKAGLTQLRIAETEKYAHVTFFFNGGREEPF--PGEDRILIPSPKVATYDLKPEMSAYEVTDKLVEAI 383 (507)
T ss_pred CcccccHHHHHHhhCCCchhhhhcCCCCCeEEEecCCCcCCCC--CCceeeecCCceeecccCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 78999999999999999999999999999999999
Q ss_pred HhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCc
Q 008773 411 LSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNI 490 (554)
Q Consensus 411 ~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~ 490 (554)
++++|||+++||+++||+||++++++++++||.+|+|||+|++++++.|.+|||||||||++.|.+ . ..++
T Consensus 384 ~~~~~Dfv~vnf~~~D~vGHtg~~~a~~~AIe~vD~~LGrll~aLk~~g~ivIITADHGn~e~m~d-~-------~tg~- 454 (507)
T PRK05434 384 ESGKYDFIILNFANPDMVGHTGNLEAAVKAVEAVDECLGRVVDAVLKVGGTLLITADHGNAEQMID-P-------ETGQ- 454 (507)
T ss_pred hccCCCEEEEEecCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCccccccc-C-------CCCC-
Confidence 988999999999999999999999999999999999999999999998899999999999999862 1 1233
Q ss_pred cccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Ccc
Q 008773 491 QVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLI 549 (554)
Q Consensus 491 ~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl 549 (554)
|++.||+++||||+++|+. ... ..++|+|||||||++||+++|++|+| ||+
T Consensus 455 -~~~~HT~~~VPlII~~p~~-----i~~--~~~sL~DIaPTIL~LlGi~~P~~m~G~SLl 506 (507)
T PRK05434 455 -PHTAHTTNPVPFILVGGKA-----LRL--EGGKLADIAPTILDLLGLEQPAEMTGKSLI 506 (507)
T ss_pred -cccCCCCeeeEEEEEECCc-----ccC--CCccHHHHHHHHHHHhCcCCCCCCCCccCC
Confidence 5899999999999999851 111 13679999999999999999999999 886
No 5
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-146 Score=1112.44 Aligned_cols=521 Identities=67% Similarity=1.062 Sum_probs=485.8
Q ss_pred CCccccCCCCCCCCcEEEEEEeccCCCCC-CCCCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhh
Q 008773 3 NWKLKEHPQLSRNNIVAVVVLDGWGEFKP-DKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGH 81 (554)
Q Consensus 3 ~~~~~~~~~~~~~~~~~L~ilDG~G~~~~-~~~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH 81 (554)
+|+|..||.....+.|+||++||||.++. ..||||..|.||.||+|...-- |++|+|||.+|||| +|.||||||||
T Consensus 6 ~~~l~~~~~~~~~~sv~liViDGWG~se~d~ygNai~~a~tp~Md~L~~g~~--w~li~AHG~hVGLP-eglMGNSEVGH 82 (531)
T KOG4513|consen 6 MWKLFDHPKLPKGKSVALIVIDGWGESEPDQYGNAIHNAPTPAMDSLKRGRT--WFLIKAHGTHVGLP-EGLMGNSEVGH 82 (531)
T ss_pred hhhhhcccccCCCCeEEEEEEcccCCCCCccccchhhcCCChHHHHhhcCcc--hhhhhhcCccccCC-ccccccccccc
Confidence 59999999999999999999999999975 5679999999999999988764 49999999999999 99999999999
Q ss_pred cccCCccccccchHHHHHHHhcCCCcCchhHhhhhhhcCCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE
Q 008773 82 NALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI 161 (554)
Q Consensus 82 ~~iGaGRvv~q~~~ri~~~i~~g~~~~n~~~~~~~~~~~~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~ 161 (554)
++||||||++||++|||.|+++|.|++|+.|++..+.+++|+|||+|||||||||||||||++|++..+++|.++||||+
T Consensus 83 l~iGaGRii~Qdivrid~Av~~gk~~~~e~~~d~~~~~~~g~lHlvGlvSDGGVHShidhl~allka~~erg~~ei~vH~ 162 (531)
T KOG4513|consen 83 LAIGAGRIIAQDIVRIDLAVASGKIKENEGFKDKSLSFEDGTLHLVGLVSDGGVHSHIDHLQALLKALAERGAKEIRVHI 162 (531)
T ss_pred cccccceeeecchhHHHHHHhcCceecccchhhHHhhccCCeEEEEEEecCCchhhhHHHHHHHHHHHHhcCCceEEEEE
Confidence 99999999999999999999999999999999988887778999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHH
Q 008773 162 LTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVK 241 (554)
Q Consensus 162 ~~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~rw~r~~~ay~~~~~g~~~~~~~~~~~~i~ 241 (554)
++|||||.|.|+.+||++-.++|++. ++.|++||+.|||| +||| +|+|+||+++|+||+.|+.++.+.++++++.
T Consensus 163 ~tDGRDt~p~s~vgfLe~~l~fLr~~---t~~gkvAs~~GR~Y-~mDR-~N~werv~~~~~amv~ge~~~e~g~~ve~v~ 237 (531)
T KOG4513|consen 163 LTDGRDTLPGSSVGFLEADLDFLRKV---TVDGKVASGGGRMY-VMDR-ENDWERVKRGWDAMVLGEAPHEFGGAVEAVK 237 (531)
T ss_pred ecCCccCCCCcchhhHHHHHHHHHHc---cccceEeeccceEE-Eeec-cccHHHhhhhhhhhhhccCchhhcchHHHHh
Confidence 99999999999999999999999987 65579999999999 8999 9999999999999999998788999999999
Q ss_pred -HHHcCCCCCCCCCCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEEeeeecCC
Q 008773 242 -KLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGE 320 (554)
Q Consensus 242 -~~y~~~~~~Defi~P~~~~~~~~~~~~~i~~~D~vif~NfR~DR~rql~~a~~~~~f~~f~~~~~~~~~~~~mt~Y~~~ 320 (554)
..|+. +.+|||++|++|.++.|+.++ ++|.|||||||+||||||++||...+|++|+|-+.|++++++||||+.+
T Consensus 238 ~~rye~-g~~De~L~p~vi~ge~Gr~~~---~DdtiifFnfRADRMr~ia~a~~~~~~d~~~r~~~p~i~~~gMtqYk~e 313 (531)
T KOG4513|consen 238 TLRYEP-GANDEYLPPFVIVGERGRAVG---PDDTIIFFNFRADRMRMIAKALEYNDFDKFDRVRHPNIRYAGMTQYKGE 313 (531)
T ss_pred hhhhCC-CCCccccCCeEEECCCCcccC---CCCeEEEEecchHHHHHHHHHhccccccccccccCCcceEeehhhhccc
Confidence 67777 689999999999988765433 3689999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCcccccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHH
Q 008773 321 LKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKAL 400 (554)
Q Consensus 321 ~~~~v~fl~~~~~~~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~ 400 (554)
|. |.-+||.|+.+.+||+|||+.+|++|++++||+||+|||||||||++.+| ..|+++++|||++.+||.+|+|++.
T Consensus 314 l~-psk~Lf~pp~i~~tlaE~La~~gv~~fhcaEteK~aHVTfFfNGgre~~F--~~ee~v~iPSp~v~sfd~qP~M~a~ 390 (531)
T KOG4513|consen 314 LK-PSKYLFSPPCIDRTLAEYLAHNGVRTFHCAETEKFAHVTFFFNGGREGYF--NEEEYVEIPSPSVISFDVQPKMKAL 390 (531)
T ss_pred cC-cceeeeccccccchHHHHHHhcCcceeeecccceeeeEEEEEcCCccccc--CcceEEEecCCCceeeecChhhhHH
Confidence 96 44446699999999999999999999999999999999999999999999 7799999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCC
Q 008773 401 EIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKS 480 (554)
Q Consensus 401 ~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~ 480 (554)
+++++++++|++++++++.||++++|||||||+++|++.|||+.|.|||+|++++++.+++++|||||||+|.|.++|
T Consensus 391 eva~ka~~~ie~G~~p~v~vNlappDMVGHTG~~EAtv~AcEatD~aig~Iy~A~~~~~y~lvvTADHGNAEkMv~~d-- 468 (531)
T KOG4513|consen 391 EVAEKARDAIESGKFPQVRVNLAPPDMVGHTGDIEATVVACEATDEAIGKIYDAIEQVGYILVVTADHGNAEKMVKRD-- 468 (531)
T ss_pred HHHHHHHHHHHcCCCCeEEEcCCCccccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCCHHHhccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred CCCcccCCCccccccCCCceeeEEEEcCCCCCCceecccCC-CcccccHHHHHHHHhCCCCCCCCCC-Ccc
Q 008773 481 GEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLP-NGGLANVAATFINLHGYEAPSDYEP-SLI 549 (554)
Q Consensus 481 G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~-~g~L~DIAPTIL~llGi~~P~~m~G-SLl 549 (554)
| |+ +|+||+.|||++|.+|+..++.+++..+. ..+|+|||||+|+++|++.|.||+| |.+
T Consensus 469 g------Gk---~tsHT~~~VPl~i~~pg~~~g~~f~~~~dt~p~L~dVApTVl~imG~p~PsEmtgisvv 530 (531)
T KOG4513|consen 469 G------GK---LTSHTLKPVPLAIGGPGLVKGVRFRGDVDTDPGLADVAPTVLNIMGFPAPSEMTGISVV 530 (531)
T ss_pred C------Cc---cccccccccceEecCCccccceeeccccccCchhhhhhHHHHHHhCCCCccccccceee
Confidence 2 43 79999999999999998766666654322 3689999999999999999999999 764
No 6
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=100.00 E-value=1.3e-85 Score=645.65 Aligned_cols=221 Identities=42% Similarity=0.742 Sum_probs=179.3
Q ss_pred HHHHHhcCCCcCchhHhhhhhhc-CC-CceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchH
Q 008773 97 VDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSV 174 (554)
Q Consensus 97 i~~~i~~g~~~~n~~~~~~~~~~-~~-~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~ 174 (554)
||+||++|+|++||+|+++++.+ ++ ++|||||||||||||||++||+||+++|+++||++||||+|+|||||+|+||+
T Consensus 1 I~~aI~~g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~ 80 (223)
T PF06415_consen 1 INKAIEDGSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSAL 80 (223)
T ss_dssp HHHHHHTTGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHH
T ss_pred CchHHhCCCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHH
Confidence 89999999999999999999999 54 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCC
Q 008773 175 GFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYL 254 (554)
Q Consensus 175 ~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~rw~r~~~ay~~~~~g~~~~~~~~~~~~i~~~y~~~~~~Defi 254 (554)
+||++|+++|+++ |.| +||||+|||| |||| |||||||++||+|||.|+|+..+.||.+||+++|++ ++|||||
T Consensus 81 ~yl~~l~~~l~~~---~~g-~IAsv~GRyy-aMDR-D~rWeRv~~Ay~alv~g~g~~~~~~~~~ai~~~Y~~-g~tDEFi 153 (223)
T PF06415_consen 81 KYLEELEEKLAEI---GIG-RIASVSGRYY-AMDR-DKRWERVEKAYDALVNGEGPNKFDDALEAIEASYAR-GITDEFI 153 (223)
T ss_dssp HHHHHHHHHHHHH---TCT-EEEEEEECCC-CT---TS-HHHHHHHHHHHCT--SE-EESSHHHHHHHHHHT-T--GGG-
T ss_pred HHHHHHHHHHHhh---CCc-eEEEEeceee-eecc-ccCHHHHHHHHHHHhcCccccccCCHHHHHHHHHcC-CCCCcCC
Confidence 9999999999998 885 9999999999 9999 999999999999999999966899999999999999 5899999
Q ss_pred CCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEEeeeecCCCCCcccc
Q 008773 255 PPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHY 327 (554)
Q Consensus 255 ~P~~~~~~~~~~~~~i~~~D~vif~NfR~DR~rql~~a~~~~~f~~f~~~~~~~~~~~~mt~Y~~~~~~~v~f 327 (554)
+|++|.+ .|.+.|++||+|||||||+||||||++||.+|+|++|+|...|++.|+|||+|+++++.||+|
T Consensus 154 ~P~vi~~---~~~~~i~dgD~vif~NFR~DRarql~~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~~~pv~F 223 (223)
T PF06415_consen 154 PPTVISD---KPYGGIKDGDAVIFFNFRPDRARQLTRALTDPDFDGFDRGPKPNLNFVTMTEYDEDFPFPVAF 223 (223)
T ss_dssp --EEEB----SBS----TT-EEEE--S-STTTHHHHHHHH-SS--SS--STT-SSEEEECC-SBTTTTCCCSE
T ss_pred CCEEecC---CCCCCccCCCEEEEEecChhHHHHHHHHHcCCCCccCCcCCCCCcEEEECccccCCCCCcccC
Confidence 9999975 456789999999999999999999999999999999999988999999999999999999987
No 7
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=100.00 E-value=6e-42 Score=345.13 Aligned_cols=178 Identities=35% Similarity=0.534 Sum_probs=148.3
Q ss_pred cccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhCC
Q 008773 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR 414 (554)
Q Consensus 335 ~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~~~~ 414 (554)
......+....|+++++++++.++.|++.||+| . .+++++..+++..|+|++.++++.+++.+++.+
T Consensus 74 ~~~~~~~~~~~~l~~~~ia~~~~~~~i~~~~~g-----~--------~v~~~~g~t~~~~~~~~~~~~~~~~~~~l~~~~ 140 (252)
T PF01676_consen 74 PNLPPSFTEKYGLKGAGIAETPKIGGIADFFGG-----M--------DVISVEGATGDVDPDMSAKEIAEAAIEALKKDK 140 (252)
T ss_dssp ES-HHHHHHHCTHHEEEEEECHHHHHHHHHTTT-----E--------EEE--STSSCCGSTTTTHHHHHHHHHHHHHHTT
T ss_pred cccccceeeccCceecceecccccceeHHHhCC-----c--------ccccccccccccccchhhHHHHHHHHHhhhccc
Confidence 334556788999999999999999999999998 1 234444678888899999999999999999899
Q ss_pred CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCccccc
Q 008773 415 FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLT 494 (554)
Q Consensus 415 ~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t 494 (554)
|||+++|+.++|++||++++++++++||.+|++|++|++++++.++++||||||||.+.+. ++
T Consensus 141 ~~~v~~~~~~~D~~GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~~~~liiTaDHg~~~~~~-----------------~~ 203 (252)
T PF01676_consen 141 YDFVFVHVKGTDEAGHRGDPEAYIEAIERIDRFLGRLLEALDKEDDLLIITADHGNDETMG-----------------HT 203 (252)
T ss_dssp SSEEEEEEEHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEESSBSTTTSB-----------------SS
T ss_pred CCeEEEeecCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCccccC-----------------Cc
Confidence 9999999999999999999999999999999999999999987889999999999987763 36
Q ss_pred cCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC
Q 008773 495 SHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP 546 (554)
Q Consensus 495 ~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G 546 (554)
.||.++|||++++++++.. .+.+ ...++||+|||++++|++.|+.|++
T Consensus 204 ~Ht~~~VPll~~g~~~~~~-~~~~---~~~~~di~~ti~~~~G~~~~~~~~~ 251 (252)
T PF01676_consen 204 SHTREPVPLLIYGPGVRGD-SVGE---FGELADIAPTILELLGLELPEEMTS 251 (252)
T ss_dssp S-B-B-EEEEEECTTEEE--SC-S---TSBCGHHHHHHHHHHTGGHHTTCHH
T ss_pred CCCCceEEEEEEeCCCccC-ccCc---CCEEehHHHHHHHHcCCCchHhhcC
Confidence 7999999999999975321 2221 4578999999999999999998863
No 8
>PRK12383 putative mutase; Provisional
Probab=99.89 E-value=2.4e-22 Score=213.91 Aligned_cols=166 Identities=18% Similarity=0.251 Sum_probs=130.9
Q ss_pred ccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhCCC
Q 008773 336 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF 415 (554)
Q Consensus 336 ~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~~~~~ 415 (554)
.++.+.++++|++...|+... +.+++ .+-.+. + +.+++.+.++++++++++.++
T Consensus 234 ~~v~~~l~~~G~~v~~VGKi~------Di~s~--------~G~t~~------~------~~~~t~~~~~~~l~aL~~~~~ 287 (406)
T PRK12383 234 VQVPQKLYEAGVPVVLVGKVA------DIVNN--------PYGVSW------Q------NLVDTQRVMDITLDEFNTHPT 287 (406)
T ss_pred chhhhHHHHcCCCEEEEEEhH------Heecc--------CCcccc------c------ccCCHHHHHHHHHHHHhcCCC
Confidence 677888999999999994332 11111 111110 0 234566899999999988779
Q ss_pred cEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCcccccc
Q 008773 416 HQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTS 495 (554)
Q Consensus 416 dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t~ 495 (554)
||+++|+.++|++||+++++++.++||.+|++|++|+++|++ +++||||||||+...+ +++.
T Consensus 288 dlvfvnl~~~D~~GH~~d~~~y~~aiE~iD~~lg~ll~~L~~-~~lliITaDHG~d~~~-----------------~~t~ 349 (406)
T PRK12383 288 AFICTNIQETDLAGHAEDVARYAERLEVVDRNLARLLEAMTP-DDCLVVMADHGNDPTI-----------------GHSH 349 (406)
T ss_pred CEEEEeccCCccccccCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEEcCCCCCCCC-----------------CCcC
Confidence 999999999999999999999999999999999999999974 6899999999984322 2568
Q ss_pred CCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Ccccc
Q 008773 496 HTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIEV 551 (554)
Q Consensus 496 HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl~~ 551 (554)
||.++||||+++|+.+. ..+.. ..+++||+|||++++|++.| ++| ||++.
T Consensus 350 HTre~VPlLi~gp~i~~-~~lg~---~~slaDIapTIl~~~Gv~~p--~~G~Sfl~~ 400 (406)
T PRK12383 350 HTREVVPLLVYQKGLQA-TQLGV---RTTLSDVGATVCEFFGAPPP--QNGRSFLSS 400 (406)
T ss_pred CCCcceEEEEEECCccc-ccCCC---CcEEhhHHHHHHHHcCCCCC--CCCCcHHHH
Confidence 99999999999998632 22222 35899999999999999988 689 98764
No 9
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.87 E-value=4e-22 Score=213.84 Aligned_cols=178 Identities=22% Similarity=0.305 Sum_probs=139.9
Q ss_pred HHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCC--------------CccC------C
Q 008773 339 GEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QPKM------K 398 (554)
Q Consensus 339 ~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~--------------~Pem------s 398 (554)
.++|.+|.+|+.|.++.+..++..|+|.+|.....+ +.++|+....-.++.+++ .|+. +
T Consensus 201 ~~iL~~HPvN~~R~~~G~~paN~iwlwG~G~~p~lp-~f~er~gl~ga~is~~~l~kGLa~~~Gm~~~~vpg~tg~~~t~ 279 (412)
T PRK04024 201 YEVLDDHPVNKERRKQGLPPANIILLRGAGEVPEIP-KFTEKYGLKAACVAGTALIKGIARMVGMDVITVEGATGGKDTN 279 (412)
T ss_pred HHHHhcCcchHHHHhcCCCCceEEEecCCCCCCCCC-CHHHhcCCceEEEeChHHHHHHHHHcCCceeccCCCcCCCCCC
Confidence 788999999999999999999999999988755553 345563221110111111 1221 3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccC
Q 008773 399 ALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRN 478 (554)
Q Consensus 399 a~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d 478 (554)
....++.++++++ +|||+++||.++|++||++++++++++||.+|++|++|++.++..++++||||||||++.+
T Consensus 280 ~~~k~~~~~~~l~--~~Dfv~vh~~~~D~~GH~gd~~~k~~aiE~iD~~l~~il~~l~~~~~~liITaDHgtp~~~---- 353 (412)
T PRK04024 280 YMAKAKAAVELLK--EYDFVLLNIKGTDEAGHDGDFEGKVEVIEKIDKMLGYILDNLDLDEVYIAVTGDHSTPVEV---- 353 (412)
T ss_pred HHHHHHHHHHHhc--cCCEEEEeccCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEecCCCCCccc----
Confidence 4567788888885 5999999999999999999999999999999999999999997567899999999996432
Q ss_pred CCCCCcccCCCccccccCCCceeeEEEEcCCCCC-C-ceecc-cCCCccc-----ccHHHHHHHHhCC
Q 008773 479 KSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGL-----ANVAATFINLHGY 538 (554)
Q Consensus 479 ~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~-~-~~~~~-~~~~g~L-----~DIAPTIL~llGi 538 (554)
+.||.+|||||+++++++. + ..|.| +|..++| .|+++.+|++++.
T Consensus 354 ---------------~~HT~~pVP~ii~g~~v~~d~~~~f~E~~~~~g~l~~~~g~~lm~~~l~~~~~ 406 (412)
T PRK04024 354 ---------------KDHSGDPVPILIYGPGVRVDDVEKFNELSAAKGGLGRIRGLDVMPILLDLMNR 406 (412)
T ss_pred ---------------ccCCCCCEeEEEEcCCccCCCCCccCHHHHhCCCCCcccHHHHHHHHHHHhch
Confidence 5799999999999999842 2 34666 5667777 3999999998875
No 10
>PRK05362 phosphopentomutase; Provisional
Probab=99.87 E-value=2.4e-21 Score=206.11 Aligned_cols=167 Identities=20% Similarity=0.237 Sum_probs=130.5
Q ss_pred cccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHH-hC
Q 008773 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAIL-SR 413 (554)
Q Consensus 335 ~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~-~~ 413 (554)
..|+.+.|+++|++...++... +.|...|-++.. +.-+..+++++++++++ +.
T Consensus 223 ~~Tl~d~L~~aG~~v~~VGki~--------------DiFa~~G~t~~~------------~~~~~~~~~~~ale~L~~~~ 276 (394)
T PRK05362 223 APTVLDKLKEAGGEVIAVGKIA--------------DIFAGQGITEKV------------KTKSNMDGMDATIEEMKEAG 276 (394)
T ss_pred CCCHHHHHHHCCCeEEEEEehh--------------hcccCCCccccc------------CCCCHHHHHHHHHHHHHhCC
Confidence 4688999999999999986533 222001111110 11134578899999998 67
Q ss_pred CCcEEEEeCCCCccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCccc
Q 008773 414 RFHQVRVNLPNSDMV-GHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQV 492 (554)
Q Consensus 414 ~~dfi~vnfan~Dmv-GHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p 492 (554)
+++|+++||.++||+ ||+++++++.++||.+|++|++|+++|++ +++||||||||+... . +
T Consensus 277 ~~~fvfvn~~~~D~~~GH~~~~~~y~~ale~~D~~lg~ll~~L~~-~tlliiTaDHG~d~t------------~-----~ 338 (394)
T PRK05362 277 DNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDARLPELLAALKE-DDLLIITADHGNDPT------------W-----P 338 (394)
T ss_pred CCcEEEEecccCccccCCcCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEeCCCCCCCC------------C-----C
Confidence 899999999999995 99999999999999999999999999976 689999999997211 0 2
Q ss_pred cccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Ccccc
Q 008773 493 LTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIEV 551 (554)
Q Consensus 493 ~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl~~ 551 (554)
.+.||.++||||+++|+.+ +..+.+ ..+++||+||||+++|++.|. +| ||++.
T Consensus 339 gt~HT~e~VPlIi~gp~v~-~~~l~~---~~sl~DI~pTia~l~Gv~~P~--~G~Sfl~~ 392 (394)
T PRK05362 339 GTDHTREYVPLLVYGPKFK-GGSLGH---RETFADIGATIADNFGVEPME--YGKSFLDE 392 (394)
T ss_pred CCCCCCCceeEEEEECCCC-ccEECC---CCEehhHHHHHHHHcCcCCCC--CCCcHHHh
Confidence 3689999999999999864 334432 467999999999999999885 79 88764
No 11
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=99.87 E-value=3.6e-21 Score=203.34 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=126.4
Q ss_pred cccHHHHHHhCCcceeEeeccc-ccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhC
Q 008773 335 DRTSGEYLVHNGVRTFACSETV-KFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR 413 (554)
Q Consensus 335 ~~tl~evLs~~Gl~qlriaete-KyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~~~ 413 (554)
..|+-+.|+++|+....|+... .|++ - |-++.. +--+..+..+.+++++++.
T Consensus 216 ~pTvld~l~~aG~~V~~VGki~DiF~g------~---------Glt~a~------------~~~~~~~~~~~~l~aL~~~ 268 (381)
T TIGR01696 216 APTVLQKLKDEGHDVISIGKIADIYDG------E---------GITKKV------------RTTSNMDGMDATIKEMKED 268 (381)
T ss_pred CCCHHHHHHHCCCeEEEEccHHhEecC------C---------Cccccc------------CCCCHHHHHHHHHHHHhcC
Confidence 4688899999999999985442 2221 1 111111 1224567889999999877
Q ss_pred CCcEEEEeCCCCcc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCccc
Q 008773 414 RFHQVRVNLPNSDM-VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQV 492 (554)
Q Consensus 414 ~~dfi~vnfan~Dm-vGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p 492 (554)
+++|+++|+.++|| +||+++.+++.++||.+|++|++|+++|++ +++|||||||||- . . . +
T Consensus 269 ~~~lif~nl~d~D~~~GH~~d~~~y~~ale~vD~~Lg~ll~~L~~-~tllIITADHG~D-p------~--------~--~ 330 (381)
T TIGR01696 269 FTGISFTNLVDFDALWGHRRDVAGYAAALELFDRRLPELFSLLRE-DDLLIITADHGND-P------T--------W--T 330 (381)
T ss_pred CCCEEEEEeCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEECCCCCC-C------C--------C--C
Confidence 79999999999998 799999999999999999999999999975 6799999999981 0 0 0 2
Q ss_pred cccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCC
Q 008773 493 LTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPS 542 (554)
Q Consensus 493 ~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~ 542 (554)
++.||.++||||+++|+++.+..+.. ..+++||+||||++||++.|.
T Consensus 331 ~t~HTre~VPlIi~gp~i~~g~~l~~---~~slaDIapTIldllGv~~p~ 377 (381)
T TIGR01696 331 GTDHTREYIPVLVYSPKVKPGHSLGH---RETFADIGATIADNFGTSDPE 377 (381)
T ss_pred CCcCCCCCEeEEEEECCCCCCceeCC---CCEehhHHHHHHHHcCcCCCC
Confidence 46899999999999998754434432 467999999999999999884
No 12
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.6e-19 Score=187.38 Aligned_cols=178 Identities=22% Similarity=0.310 Sum_probs=140.2
Q ss_pred cHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCC-------------cc-------
Q 008773 337 TSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-------------PK------- 396 (554)
Q Consensus 337 tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~-------------Pe------- 396 (554)
...|+|.+|.+|..|..+.+..++..++|++|..+.+++ +++++.+....++.+++. ++
T Consensus 202 ~~~eiL~~hpvN~~R~~~Gk~paN~iL~rgag~~P~ip~-F~e~yglk~a~Ia~~~l~KGlar~~GmDvi~vegatG~~d 280 (408)
T COG3635 202 KAYEILRDHPVNLKRRKQGKLPANAILLRGAGRYPKIPS-FQERYGLKGACIAAVPLIKGLARLVGMDVIEVEGATGYID 280 (408)
T ss_pred HHHHHHhcCcccHHHHhcCCCCccEEEEcCCCCCCCCCC-HhHhhCcceEEEEecHHHHhHHHHhCCceeecccccCccC
Confidence 347899999999999999999999999999998766643 566665444334444431 11
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcc
Q 008773 397 MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVK 476 (554)
Q Consensus 397 msa~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~ 476 (554)
..-......++++++ +|||++||+..+|.+||.|+++.++++||.+|+.++.+++ +.....+++||+||-++...
T Consensus 281 tn~~~k~k~a~eal~--~yDfv~vhik~tDeagHdG~~e~Kv~~IE~iD~~i~pll~-~~~~~~~i~vt~DHsTPv~v-- 355 (408)
T COG3635 281 TNYRGKAKAAIEALK--EYDFVFVHIKATDEAGHDGDFEGKVRVIEDIDKAIGPLLD-LDLDEDVIAVTGDHSTPVSV-- 355 (408)
T ss_pred ccHHHHHHHHHHHHh--hCCEEEEEeccCccccCCCCHHHhHHHHHHHHHHhhhhhc-cccCCcEEEEeCCCCCcccc--
Confidence 112345667777774 5999999999999999999999999999999999999998 55456899999999986332
Q ss_pred cCCCCCCcccCCCccccccCCCceeeEEEEcCCCC-CC-ceecc-cCCCccc-----ccHHHHHHHHhC
Q 008773 477 RNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLP-DD-VKFRT-DLPNGGL-----ANVAATFINLHG 537 (554)
Q Consensus 477 ~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~-~~-~~~~~-~~~~g~L-----~DIAPTIL~llG 537 (554)
..||..|||++|++++.. +. ..|.| +|..|+| .||+|-+|++++
T Consensus 356 -----------------k~Hs~dPVPili~~~~v~~D~v~~F~E~~~~~G~Lgri~g~dlm~ill~~~~ 407 (408)
T COG3635 356 -----------------KDHSGDPVPILIYGPYVRRDDVKRFDEFSCARGSLGRIRGSDLMPILLDLAG 407 (408)
T ss_pred -----------------cccCCCCccEEEecCCcccCccceecHhhhhcCCcceeehHHHHHHHHHhhc
Confidence 479999999999999863 22 35666 6777888 399999999986
No 13
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=99.83 E-value=2.3e-20 Score=199.53 Aligned_cols=177 Identities=20% Similarity=0.236 Sum_probs=134.0
Q ss_pred cccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCC--------------CccC---
Q 008773 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QPKM--- 397 (554)
Q Consensus 335 ~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~--------------~Pem--- 397 (554)
.+...++|.+|.+|+.|.++.++.++..|+|.+|.....+ +..+|+....-.++.+++ .|+.
T Consensus 191 ~~~~~~iL~~HpvN~~R~~~G~~paN~iwl~G~G~~p~l~-~f~er~gl~~a~ia~~~l~kGLa~~~Gm~~~~v~gatg~ 269 (396)
T TIGR00306 191 MLESAEVLQNHPINTKRAKKGKGPANMILPRGAGRMPRVE-SFKERYGLRGAMIAEVDLIKGLARLIGMDVIRVEGATGG 269 (396)
T ss_pred HHHHHHHHhcCcchHHHHhcCCCCceEEEecCCCCCCCCC-CHHHhcCCceEEEechHHHHHHHHHcCCeeecCCccccc
Confidence 4556888999999999999999999999999988755443 345563221111111111 1111
Q ss_pred ---CHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhh
Q 008773 398 ---KALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 474 (554)
Q Consensus 398 ---sa~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m 474 (554)
......++++++++ +|||+++||.++|++||++++++++++||++|+++.++++++++.++++||||||||++.
T Consensus 270 ~dt~~~~k~~~~~~~l~--~yDfv~v~~~~~D~aGH~gd~~~k~~aIE~iD~~l~~~l~~l~~~~~~liiTaDHgtp~~- 346 (396)
T TIGR00306 270 IDTDYRGKVRALILALE--EYDFVLVHTKGPDEAGHDGDPELKVRAIEKIDSKIVGPLLALDLDETRLILTADHSTPVE- 346 (396)
T ss_pred ccccHHHHHHHHHHHhh--cCCEEEEEecCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCC-
Confidence 22345667777774 599999999999999999999999999999999999999999877889999999999732
Q ss_pred cccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCC-C-ceecc-cCCCcccc-----cHHHHHH
Q 008773 475 VKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGLA-----NVAATFI 533 (554)
Q Consensus 475 ~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~-~-~~~~~-~~~~g~L~-----DIAPTIL 533 (554)
.+.||.+|||||+++++++. + ..|.| +|..|+|. |+++.+|
T Consensus 347 ------------------~~~Ht~~pVP~ii~g~~~~~d~~~~f~E~~~~~g~l~~~~g~~lm~~~l 395 (396)
T TIGR00306 347 ------------------VKDHSADPVPIVIVGPGVRVDEVKSFNEFACRKGALGRIRGEDLMDILL 395 (396)
T ss_pred ------------------CCCCCCCCeeEEEEeCCccCCCCCCcChHHHhCCCCCcccHHHHHHHHh
Confidence 36799999999999999842 2 35666 55567774 7777766
No 14
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.79 E-value=5.2e-19 Score=189.12 Aligned_cols=179 Identities=25% Similarity=0.319 Sum_probs=132.6
Q ss_pred ccccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCC--------------Ccc---
Q 008773 334 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QPK--- 396 (554)
Q Consensus 334 ~~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~--------------~Pe--- 396 (554)
+.+...++|.+|.+|+.|.++.+..++..|+|.+|.....+ +.++++....-.++.+++ .|.
T Consensus 186 ~~~~~~~~L~~HPvN~~R~~~G~~paN~iwlwG~G~~p~~p-~f~e~~gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg 264 (395)
T PRK04200 186 LMLSSQEILEDHPVNLKRIEEGKLPANSIWLWGQGYAPKMP-SFKEKYGLKGAVISAVDLLKGIGIYAGLDVIEVPGATG 264 (395)
T ss_pred HHHHHHHHHHhCcccHHHHHcCCCCceEEEecCCCCCCCCC-CHHHhcCCceEEEeccHHHHHHHHHcCCccccCCCccc
Confidence 34667889999999999999999999999999988755443 244443221100111111 011
Q ss_pred ---CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHh-cCcEEEEecCCCCh
Q 008773 397 ---MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEA-VKIIIDAIEK-VGGIYLVTADHGNA 471 (554)
Q Consensus 397 ---msa~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~-lgrLl~al~~-~gt~iIITSDHGn~ 471 (554)
..-....++++++++ +|||+++|+.++|++||++++++++++||++|++ +++|++++++ .+++++||||||+.
T Consensus 265 ~~dt~~~~k~~~a~~~l~--~~DfV~vh~~~~D~aGH~gd~~~kv~aiE~lD~~~~~~ll~al~~~~~~~l~it~DH~tp 342 (395)
T PRK04200 265 YLDTNYEGKAEAALEALK--THDFVFVHVEAPDEAGHEGDLEAKIKAIEDIDERVVGPILEALKKYEDYRILVLPDHPTP 342 (395)
T ss_pred ccccchHHHHHHHHHHhc--cCCEEEEEecCcchhhccCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCEEEEeccCCcC
Confidence 122345667778874 5999999999999999999999999999999998 5589999975 56799999999973
Q ss_pred hhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCC-C-ceecc-cCCCcccc-----cHHHHHHH
Q 008773 472 EDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGLA-----NVAATFIN 534 (554)
Q Consensus 472 e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~-~-~~~~~-~~~~g~L~-----DIAPTIL~ 534 (554)
. +++.||.+|||||+++++++. + ..|.| +|..|+|. |+++.+|+
T Consensus 343 ~-------------------~~~~Ht~~pVP~ii~g~~~~~d~~~~f~E~~~~~g~l~~~~g~~lm~~~l~ 394 (395)
T PRK04200 343 I-------------------ELKTHTADPVPFLIYGEGIEPDGVQTFDEKSARKGGLGLVEGCELMELLLK 394 (395)
T ss_pred C-------------------CCCccCCCCEeEEEEcCCcCCCCCCccCHHHHcCCCcccccHHHHHHHHhh
Confidence 1 247899999999999998742 2 35666 56667773 77777664
No 15
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=99.77 E-value=1.5e-18 Score=185.62 Aligned_cols=178 Identities=22% Similarity=0.297 Sum_probs=131.0
Q ss_pred ccccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCC--------------CccC--
Q 008773 334 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QPKM-- 397 (554)
Q Consensus 334 ~~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~--------------~Pem-- 397 (554)
+.+...++|.+|.+|+.|.++.+..++..|+|++|.....+ +.++++....-.++.+++ .|..
T Consensus 187 ~~~~~~~lL~~HPvN~~R~a~G~~paN~iwlwG~G~~p~~p-~f~e~~gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg 265 (396)
T TIGR02535 187 LILASAEILKNHPVNLKRQSAGKDPANMIWLWGSGGAPKMP-TFSERYGIRGAMISAVDLLKGIGIYAGLERIEVEGATG 265 (396)
T ss_pred HHHHHHHHHHhCcchHHHHhcCCCCceEEEecCCCCCCCCC-CHHHhcCCceEEEeccHHHHHHHHHcCCccccCCcccc
Confidence 34667889999999999999999999999999999755553 234443221110111111 0111
Q ss_pred ----CHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhcC--cEEEEecCCCC
Q 008773 398 ----KALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEA-VKIIIDAIEKVG--GIYLVTADHGN 470 (554)
Q Consensus 398 ----sa~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~-lgrLl~al~~~g--t~iIITSDHGn 470 (554)
.-....+.++++++ +|||+++|+.++|++||++++++++++||++|++ ++++++++++.| .+++||||||+
T Consensus 266 ~~dt~~~~k~~~~~~~l~--~~Dfv~vh~~~~D~aGH~gd~~~kv~aIE~lD~~~~~~ll~al~~~~~~~~~~vt~DH~t 343 (396)
T TIGR02535 266 YLDTNYEGKVRAALEALE--TYDFVVVHVEAPDEAGHEGDLEAKIKAIELIDSRIVGPLLEALSDRDEPFRILVLPDHPT 343 (396)
T ss_pred ccccchHHHHHHHHHHHh--hCCEEEEEeCCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeCcc
Confidence 12234667777775 5999999999999999999999999999999997 568999997654 49999999997
Q ss_pred hhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCC-C-ceecc-cCCCcccc-----cHHHHHH
Q 008773 471 AEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGLA-----NVAATFI 533 (554)
Q Consensus 471 ~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~-~-~~~~~-~~~~g~L~-----DIAPTIL 533 (554)
.. +++.||.+|||||+++++++. + ..|.| +|..|+|. |+++.+|
T Consensus 344 p~-------------------~~~~Ht~~pVP~ii~g~~~~~d~~~~f~E~~~~~g~l~~~~g~~lm~~~~ 395 (396)
T TIGR02535 344 PL-------------------ELKTHTAEPVPFLLYGKGIESDSVKTFDEKSARRGGIGFVKGCELMDALI 395 (396)
T ss_pred CC-------------------CCCccCCCCEeEEEEeCCcCCCCCCccCHHHHcCCCcccccHHHHHHHHh
Confidence 31 247899999999999998742 2 35666 56667773 7776665
No 16
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.9e-16 Score=162.91 Aligned_cols=165 Identities=21% Similarity=0.281 Sum_probs=128.2
Q ss_pred cccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhCC
Q 008773 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR 414 (554)
Q Consensus 335 ~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~~~~ 414 (554)
..|+-+.|.++|..+.+|+.. .+-|...|.... + +.-+..+..|.+++.+++..
T Consensus 226 ~~tvl~~L~e~g~~vi~IGKI--------------~DI~~~~Git~~------~------~~~~n~~~~d~tl~~~~~~~ 279 (397)
T COG1015 226 APTVLDKLKEAGRPVIAIGKI--------------ADIYAGQGITEK------V------KAVSNMDGMDVTLEEMKTAE 279 (397)
T ss_pred hhhHHHHHHHcCCceEEEeeH--------------Hhhhcccccccc------c------cCCCcHHHHHHHHHHHhcCC
Confidence 357889999999999998543 333311111111 1 11244578899999998544
Q ss_pred -CcEEEEeCCCCc-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCccc
Q 008773 415 -FHQVRVNLPNSD-MVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQV 492 (554)
Q Consensus 415 -~dfi~vnfan~D-mvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p 492 (554)
-.|++.|+-..| .+||+.+...|.+|+|.+|+.|.+|++.|++. .++|||||||| |++- +
T Consensus 280 ~~~~vFtNlVdfD~~yGHRrDv~gYa~aLe~FD~rL~e~~~~l~ed-DlLiiTADHGn-------DPT~----------~ 341 (397)
T COG1015 280 FNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDRRLPELIENLRED-DLLIITADHGN-------DPTW----------G 341 (397)
T ss_pred CCcEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEecCCCC-------CCCC----------C
Confidence 469999999999 79999999999999999999999999999985 59999999998 4331 3
Q ss_pred cccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Ccc
Q 008773 493 LTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLI 549 (554)
Q Consensus 493 ~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl 549 (554)
+|.||.+.||+|+++|+++++ .+.. ..+++||..||++.||+++|. .| |++
T Consensus 342 gTdHTRE~iPvl~y~~~~k~~-~lg~---r~tfADiGaTvA~~fgv~~~~--~G~sfl 393 (397)
T COG1015 342 GTDHTREYIPVLVYGPGLKPG-SLGT---RETFADIGATVADNFGVSPPQ--YGKSFL 393 (397)
T ss_pred CCCccccccceEEEcCCccCC-cccc---cccHHHHHHHHHHHhCCCCcc--ccHHHH
Confidence 589999999999999998654 3332 457899999999999999887 56 665
No 17
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.65 E-value=7.7e-16 Score=163.73 Aligned_cols=167 Identities=15% Similarity=0.245 Sum_probs=124.0
Q ss_pred ccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCC-------------CccCCHHHH
Q 008773 336 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV-------------QPKMKALEI 402 (554)
Q Consensus 336 ~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~-------------~Pemsa~~v 402 (554)
....++|++|. .++..|+|.+|....++ ++++|+....-.++..++ .|..+....
T Consensus 202 ~~~~eiL~~hp-----------pAN~il~rg~G~~p~lp-~F~e~~Glkga~Ia~~~l~kGi~~~~Gm~~i~~ga~~~~k 269 (395)
T PRK04135 202 KRAAEVLKDEP-----------KANFALLRGFSKKPDFP-SFEEVYKLKAAAIASYPMYRGLAKLVGMDVLPTGQTLEDE 269 (395)
T ss_pred HHHHHHHhcCC-----------cccEEEecCCCCCCCCC-CHHHHhCCceEEEehhHHHHHHHHHcCCeecCCCCCHHHH
Confidence 34466677766 78899999888766554 356665433211211111 133355566
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCC
Q 008773 403 AERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGE 482 (554)
Q Consensus 403 td~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~ 482 (554)
.+.++++++ +|||+++|+..+|.+||.+++++++++||.+|++|..|+ .++ ..+|+|||||++++..
T Consensus 270 ~~~a~~~l~--~~DfV~vhvk~~DeaGH~gd~~~Kv~~IE~iD~~l~~ll-~l~--~~~ivVT~DH~TP~~~-------- 336 (395)
T PRK04135 270 IKTLKENWN--DYDFFFLHVKKTDSYGEDGNFEEKVKVIEEVDALLPEIL-ALK--PDVLVITGDHSTPAVL-------- 336 (395)
T ss_pred HHHHHHHHh--cCCEEEEEeccCchhhccCCHHHHHHHHHHHHHHHHHHh-cCC--CcEEEEeCCCCCcccc--------
Confidence 777887774 499999999999999999999999999999999999988 553 4599999999997532
Q ss_pred CcccCCCccccccCCCceeeEEEEcCCCCC-C-ceecc-cCCCcccc-----cHHHHHHHHhCC
Q 008773 483 PLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGLA-----NVAATFINLHGY 538 (554)
Q Consensus 483 ~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~-~-~~~~~-~~~~g~L~-----DIAPTIL~llGi 538 (554)
..||.+||||++++++++. + ..|.| +|..++|. |+++.+|++++.
T Consensus 337 -----------~~Hs~dPVP~li~g~~~~~D~v~~F~E~~~~~G~L~~~~G~~lm~~~l~~~~~ 389 (395)
T PRK04135 337 -----------KGHSWHPVPLLLYSKYCRPDLSQRFTERECARGGLGHIPAVDLMPLALAHALR 389 (395)
T ss_pred -----------cccCCCCEeEEEEcCCCCCCCCCccCHHHHcCCCcCcccHHHHHHHHHHhhhh
Confidence 4699999999999998742 2 35666 55567763 999999998775
No 18
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=99.48 E-value=2.7e-13 Score=149.45 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCC-
Q 008773 436 ATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL- 510 (554)
Q Consensus 436 a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~- 510 (554)
.|..+|+.+|.+||+|+++|++.| |+||||||||.. + .++|.. .|. ..++...+|||||.+|+.
T Consensus 254 ~Y~~~v~~~D~~iG~il~~L~~~g~~dnTivvf~sDHG~~--~---G~~g~~--~K~----~~ye~~~~vPlii~~p~~~ 322 (500)
T TIGR03417 254 AYFGAISYLDDKIGELLQTLEETRQADDTIVLFTSDHGDM--L---GERGLW--YKM----SFFEGSARVPLMVHAPGRF 322 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCCcEEEEECCCchh--h---ccCCcc--ccc----CcccccceEeEEEEeCCCC
Confidence 456789999999999999999875 899999999963 3 234411 122 356788899999999983
Q ss_pred CCCceecccCCCcccccHHHHHHHHhCCCCCC---CCCC-Ccccc
Q 008773 511 PDDVKFRTDLPNGGLANVAATFINLHGYEAPS---DYEP-SLIEV 551 (554)
Q Consensus 511 ~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~---~m~G-SLl~~ 551 (554)
+.+ ...+ ..++.||+||||+++|++.|. .|+| ||+++
T Consensus 323 ~~~-~~~~---~v~~~Di~pTil~l~g~~~~~~~~~~~G~SL~~~ 363 (500)
T TIGR03417 323 APG-RVAA---PVSTVDLLPTLVDLAGGDMDEVLPWTDGRSLVPH 363 (500)
T ss_pred CCc-ccCC---ceeehhHHHHHHHHhCCCCcccCCCCCCeehHHH
Confidence 322 2222 356789999999999999994 4999 99875
No 19
>PRK13759 arylsulfatase; Provisional
Probab=99.46 E-value=5.5e-13 Score=146.56 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCC-
Q 008773 436 ATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL- 510 (554)
Q Consensus 436 a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~- 510 (554)
.|..+|+.+|.+||+|+++|++.| |+||||||||.. +. ++|.. .++. .+....+|||||++|+.
T Consensus 269 ~Y~~~i~~~D~~iG~l~~~l~~~g~~dnTiiv~tsDHG~~--~g---~~~~~--~k~~----~~e~~~rVPlii~~p~~~ 337 (485)
T PRK13759 269 AYYGLITHIDHQIGRFLQALKEFGLLDNTIILFVSDHGDM--LG---DHYLF--RKGY----PYEGSAHIPFIIYDPGGL 337 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCeEEEEECCCccc--cc---ccccc--cCCc----cccccceeeEEEecCCcc
Confidence 466789999999999999999875 899999999953 32 23311 2222 35566799999999973
Q ss_pred ---CCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Ccccc
Q 008773 511 ---PDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIEV 551 (554)
Q Consensus 511 ---~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl~~ 551 (554)
+.+....+ ..++.||+||||+++|++.|..|+| ||+++
T Consensus 338 ~~~~~g~~~~~---~v~~~Di~pTil~l~g~~~p~~~~G~sl~~~ 379 (485)
T PRK13759 338 LAGNRGTVIDQ---VVELRDIMPTLLDLAGGTIPDDVDGRSLKNL 379 (485)
T ss_pred cccCCCceecC---cceecchHHHHHHHhCCCCCcCcCCccchhh
Confidence 22222221 3567899999999999999999999 99876
No 20
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=99.34 E-value=3.1e-11 Score=121.41 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHHH--HhCCCcEEEEeCCCCcc--CCCC------------------CCHHHHHHHHHHHHHHHHHHHH
Q 008773 396 KMKALEIAERAKKAI--LSRRFHQVRVNLPNSDM--VGHT------------------GDIEATVVACKAADEAVKIIID 453 (554)
Q Consensus 396 emsa~~vtd~ai~~I--~~~~~dfi~vnfan~Dm--vGHt------------------g~~~a~~~aIe~vD~~lgrLl~ 453 (554)
.+....+.+.+++.| +..+|.|+++++..+-. .-.. .....|..+|..+|++|+++++
T Consensus 150 ~~~d~~~~~~~~~~l~~~~~~p~f~~~~~~~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~l~~~~~ 229 (308)
T PF00884_consen 150 GYSDDALFDYAIDFLLNEDDKPFFLFIHTMGPHGPYPYPPDYAEKFPKFSPDIPDKDREMRNNYLNAIAYVDDQLGRFIE 229 (308)
T ss_dssp CEHHHHHHHHHHHHHHCTTTSSEEEEEEE-TTSSSTCTTCCHHHGGTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhcccccceeEEeeccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHhhhhhh
Confidence 455667888898887 34679999998765432 0000 1124667899999999999999
Q ss_pred HHHhcC----cEEEEecCCCChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCceecccCCCcccccHH
Q 008773 454 AIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVA 529 (554)
Q Consensus 454 al~~~g----t~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIA 529 (554)
.|++.+ |+||||||||..-........+ .++. .......+|||+|++|+........ ...+..||+
T Consensus 230 ~l~~~~~~d~TiiiitsDHG~~~~e~~~~~~~----~~~~---~~~~~~~~vP~~i~~p~~~~~~~~~---~~~s~~Di~ 299 (308)
T PF00884_consen 230 YLKEQGLYDNTIIIITSDHGESFGENGHYFHG----GKGN---DLYEESYHVPLIIYWPGGEPQQTID---RLVSHIDIA 299 (308)
T ss_dssp HHHHTTCGGGEEEEEEESSSSSTGGHHTTSSS----STTH---SSSHHHHBEEEEEECTTSSSCEEEC---S-EEGGGHH
T ss_pred hhhhcCCcccceeEEecCcCcccccccccccc----cccc---cchhhccccceEEEcCCCCCCcEEC---CeEEhHHHH
Confidence 997765 8999999999742110000000 1110 1123345899999999864331222 146778999
Q ss_pred HHHHHHhCC
Q 008773 530 ATFINLHGY 538 (554)
Q Consensus 530 PTIL~llGi 538 (554)
||||++|||
T Consensus 300 pTll~l~Gi 308 (308)
T PF00884_consen 300 PTLLDLLGI 308 (308)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhCC
Confidence 999999996
No 21
>KOG3731 consensus Sulfatases [Carbohydrate transport and metabolism]
Probab=99.29 E-value=5.4e-12 Score=133.62 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCC
Q 008773 435 EATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL 510 (554)
Q Consensus 435 ~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~ 510 (554)
....+.++.||..|.+|.+.+.+.| |.||.|||||..- ...| +.+|+. ..++-..+|||+|.||++
T Consensus 273 rkrlQtlqSvd~sve~l~n~l~elgeLdnTyivytsDhGyhl-----Gqfg---l~kgks--~pyEfdiRVPf~iRgP~v 342 (541)
T KOG3731|consen 273 RKRLQTLQSVDDSVERLYNLLGELGELDNTYIVYTSDHGYHL-----GQFG---LWKGKS--MPYEFDIRVPFLIRGPGV 342 (541)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcccceEEEEEcCCcccc-----cccc---cccCCC--CceeEeeeeeEEeeCCCC
Confidence 4456778999999999999998765 8999999999751 1222 145653 456788899999999998
Q ss_pred CCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Ccccc
Q 008773 511 PDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIEV 551 (554)
Q Consensus 511 ~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl~~ 551 (554)
+++..+.+ ...+.|||||||+++|+|.|+.|+| ||+++
T Consensus 343 ~~~~~~~~---Iv~niDlaPTilDiAGlp~p~~mdg~sll~l 381 (541)
T KOG3731|consen 343 APNKTVNE---IVLNIDLAPTILDIAGLPKPACMDGRSLLPL 381 (541)
T ss_pred Cccccchh---hheeccccchhhhhcCCCCcccccccchhhh
Confidence 76655443 2345799999999999999999999 99876
No 22
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.3e-11 Score=135.57 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCC-hhhhcccCCCCCCcc-cCCCccccccCCCceeeEEEEcC
Q 008773 435 EATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGN-AEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGP 508 (554)
Q Consensus 435 ~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn-~e~m~~~d~~G~~~~-~~g~~~p~t~HT~~~VPfIi~gp 508 (554)
..|..+|+.+|.+||||+++|++.| |+||||||||- ...+ +.+++ .++ ..+.+..+|||||.+|
T Consensus 260 ~~Y~a~v~~~D~~iGrll~~L~~~g~~DnTivvftsDhG~~~~~~------~~~~~~~k~----~~~egg~~VPliI~~P 329 (475)
T COG3119 260 TVYAACVRYLDDQIGRLLDALKELGLLDNTIVVFTSDHGAWLGAH------GTPFRGYKG----TLYEGGTRVPLIIRWP 329 (475)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhCCccCcEEEEeCCCCCcccCC------CCccccccc----ccccCcccceEEEecc
Confidence 6677889999999999999999887 89999999993 1111 11212 233 2567888999999999
Q ss_pred CC-CCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-Cccc
Q 008773 509 GL-PDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIE 550 (554)
Q Consensus 509 ~~-~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl~ 550 (554)
+. +.+...++. -.++.||+||+|+++|++.|...+| ++.+
T Consensus 330 g~i~~~g~~~~~--~v~~~Di~PTll~~aG~~~~~~~~G~~~~~ 371 (475)
T COG3119 330 GGIKPGGRVVDA--LVSLIDLLPTLLDAAGVPPPKDLDGQSLPP 371 (475)
T ss_pred CccCCCCccccc--cchhhHHHHHHHHHcCCCCcccccccccCc
Confidence 84 222233321 3456899999999999999999999 7665
No 23
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=99.18 E-value=5.8e-10 Score=126.95 Aligned_cols=194 Identities=15% Similarity=0.156 Sum_probs=113.8
Q ss_pred ccHHHHHHhCCcceeEeeccc-ccCceEEecC-CCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHH--
Q 008773 336 RTSGEYLVHNGVRTFACSETV-KFGHVTFFWN-GNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAIL-- 411 (554)
Q Consensus 336 ~tl~evLs~~Gl~qlriaete-KyahvtfF~n-Gg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~-- 411 (554)
.+|+++|+++||++..+.... .+.+...|+. -|....+ +... +........|...=....+.+.+.+++.++
T Consensus 244 ~cLgdILK~~GY~T~Fi~G~d~~F~n~~~f~~~hGFD~~y---g~~d-~~~~~~~~~~~n~WG~~Dd~Lfd~A~e~l~eL 319 (762)
T PRK03776 244 ICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLY---GSEE-LKSVVADPHYRNDWGFYDDTVLDEAWKKFEEL 319 (762)
T ss_pred ccHHHHHHhCCCceEEEeCCCcCcCchhhhHHhCCCcEEe---cchh-cccccccccccCCcccCcHHHHHHHHHHHHHh
Confidence 589999999999998886543 3433323322 2222111 1000 000000011111001234567777776554
Q ss_pred --hCCCcEEEEeCCCCccC-CC------------CCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChh
Q 008773 412 --SRRFHQVRVNLPNSDMV-GH------------TGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAE 472 (554)
Q Consensus 412 --~~~~dfi~vnfan~Dmv-GH------------tg~~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e 472 (554)
+++|.|+++....+-+- |+ .+....+..+++.+|.+||++++.+++.+ |+||+|||||..
T Consensus 320 sk~~kPFfl~llTlstH~P~g~~~~~c~~~~y~~~g~~~~~~~~v~~~D~~iG~fi~~Lk~~g~~dNTiIV~~sDHG~m- 398 (762)
T PRK03776 320 SRSGQRFSLFTLTVDTHHPDGFISRTCNRKSYDFDGKPNQSFSAVSCSQENIAALINKIKASPWFKNTVIVVSSDHLAM- 398 (762)
T ss_pred hcCCCCEEEEecCCCCcCCCccCchhhcccccccCCcchHHHHHHHHHHHHHHHHHHHHHhCCCccCeEEEEEccCCcc-
Confidence 35788887654432110 11 12224556799999999999999999875 899999999973
Q ss_pred hhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCC----C-CCCCC-
Q 008773 473 DMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEA----P-SDYEP- 546 (554)
Q Consensus 473 ~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~----P-~~m~G- 546 (554)
. ..++ .. ...+....+|+|+.+|+. .+....+ ..++.||+||||+++|++. | ..++|
T Consensus 399 --~--g~~~-------~~--l~~~kr~~i~lII~~p~~-~g~~~~~---~vs~IDI~PTILdlaGi~~~lglG~nllsG~ 461 (762)
T PRK03776 399 --N--NTAW-------KY--LNKQDRNNLFFVIRGDKP-QQETLAV---KRNTMDNGATVLDILGGDNYIGLGRSSLSGQ 461 (762)
T ss_pred --c--cccc-------hh--hccCCceeEEEEEECCCc-CCceECC---ceeehhHHHHHHHHhCCCccccCCcccCCCC
Confidence 1 1111 00 011223467899999863 3333332 4677899999999999987 4 44778
Q ss_pred Ccccc
Q 008773 547 SLIEV 551 (554)
Q Consensus 547 SLl~~ 551 (554)
||+++
T Consensus 462 SL~pl 466 (762)
T PRK03776 462 SLSEI 466 (762)
T ss_pred CHHHH
Confidence 88764
No 24
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.18 E-value=3.8e-10 Score=120.95 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHhC-CCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEecCCCChhhhc
Q 008773 398 KALEIAERAKKAILSR-RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIE-KVGGIYLVTADHGNAEDMV 475 (554)
Q Consensus 398 sa~~vtd~ai~~I~~~-~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~-~~gt~iIITSDHGn~e~m~ 475 (554)
+..+.++++++.|++. +..|++++...+|+.||..+...++++++++|++|+.+++.++ ..+++||||||||+.....
T Consensus 232 sL~emt~~al~~L~~~~~gFfl~ve~~~iD~~gH~~d~~~~~~~l~~~D~av~~~l~~l~~~~dTLiIvTADHg~~~~~~ 311 (384)
T cd00016 232 SLAEMTEKAIDVLSKNPNGFFLMVEGGRIDHAHHANDAAGALSETLAFDDAVEAALDFAKKDGDTLVVVTADHSHGGTIL 311 (384)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCCcccc
Confidence 4467899999999763 5679999999999999999999999999999999999999997 4579999999999964332
Q ss_pred ccCCCCCCccc---------CCCcc-------ccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCC
Q 008773 476 KRNKSGEPLLK---------DGNIQ-------VLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGY 538 (554)
Q Consensus 476 ~~d~~G~~~~~---------~g~~~-------p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi 538 (554)
.....+.+... .+.|. ....||.++||++.+||+.. .+.. .-.+.||++.|+..|++
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~Htg~~Vpv~a~Gp~a~---~f~g---~~ent~I~~~i~~al~~ 384 (384)
T cd00016 312 GYAGRGNPILGLADAPELDVDGLPYTTLTYANTTGTHGGEDVPVFAYGPGSH---LFRG---VMENTEIAHVMAYALGL 384 (384)
T ss_pred CCCCCCCcccccccccccccCCCCceEEEecCCCCCCcCceeeEEeecCCcc---ccCc---ceecHHHHHHHHHHhcC
Confidence 10011110000 01100 14689999999999999742 2221 12457999999999875
No 25
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=99.11 E-value=2e-09 Score=122.32 Aligned_cols=189 Identities=14% Similarity=0.054 Sum_probs=110.1
Q ss_pred ccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCC----C-c-cccCCCccCCHHHHHHHHHHH
Q 008773 336 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSD----S-G-ITFNVQPKMKALEIAERAKKA 409 (554)
Q Consensus 336 ~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp----~-v-~tyD~~Pemsa~~vtd~ai~~ 409 (554)
.+|+++|+++||++..+..... .|||-+ ..+...|-++..-.+. . . ..+...-.+.-+.+.+.+++.
T Consensus 240 ~~La~ILkq~GY~Taf~hG~~~-----sF~nrd--~fyk~hGFD~f~d~~~f~~~~~~~~~~~~~WGl~Dd~lfd~A~~~ 312 (703)
T PRK12363 240 RCLGDYLKDQGYTNHYVGGADA-----SFAGKG--KFLSSHGFDEVHDVNYFLHDKGVAPKHFSAWGVHDDVLLDDAYDE 312 (703)
T ss_pred chHHHHHHhCCCcEEEEeCCCc-----CcCchh--hHHHhCCCCEEeechhhccccccCcccCCCCCcccHHHHHHHHHH
Confidence 6789999999999987753322 233321 1110012221110000 0 0 000000123445677888877
Q ss_pred HHh----CCCcEEEEeCCC---Cc----c-C-C----CCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCC
Q 008773 410 ILS----RRFHQVRVNLPN---SD----M-V-G----HTGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADH 468 (554)
Q Consensus 410 I~~----~~~dfi~vnfan---~D----m-v-G----Htg~~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDH 468 (554)
|++ ++|.|+.+.... |+ . . . .......+..+++..|++||++++.+++.| |+|||+|||
T Consensus 313 Le~Ls~~~qPFfl~llTvsnH~Py~~lp~~~~~~~~~~~~gd~~Yl~tI~ysD~aIG~FId~LKksglydNTIIV~~GDH 392 (703)
T PRK12363 313 FETLSRAGQPFMLTTLTMDTHHPAGHLPSACKGQRYDSPLGDIGMLHAIKCSDRLIGQLVDRIRNSRYGKNTIIVIASDH 392 (703)
T ss_pred HHhhhccCCCEEEEeeCCCCCCCcccCchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCcCCeEEEEEcCC
Confidence 765 578887763211 11 0 0 0 000125677899999999999999999965 899999999
Q ss_pred CChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcC-CCCCCceecccCCCcccccHHHHHHHHhCCCCCCCCCC-
Q 008773 469 GNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGP-GLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP- 546 (554)
Q Consensus 469 Gn~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp-~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G- 546 (554)
|.... +.. . ......+||+++..| +++++.... ..++..||+||||+++|++.+.-+-|
T Consensus 393 ~~~~~----~~~-------~-----~L~~~kRvP~~I~ip~gik~g~i~~---~~gS~iDI~PTLL~LLGi~~~~~~fG~ 453 (703)
T PRK12363 393 LAMPN----DLS-------D-----VLTKQKRENLLLFLGKDIAPQQVVT---RAGTTLDSGATLLQLLEPGMRTLGFGR 453 (703)
T ss_pred Ccccc----ccc-------c-----cCCCCCeEEEEEEECCcCCCCcEEC---CeeeeeHHHHHHHHHhCCCCCCCcCCC
Confidence 95211 000 0 011224789888774 444332222 24678899999999999988876778
Q ss_pred Cccc
Q 008773 547 SLIE 550 (554)
Q Consensus 547 SLl~ 550 (554)
+|+.
T Consensus 454 dLLS 457 (703)
T PRK12363 454 SLLA 457 (703)
T ss_pred cCCC
Confidence 8764
No 26
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=98.86 E-value=8.7e-08 Score=107.04 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChhhhcccCCCCCCcccCCCcccccc--CCCceeeEEEEcC
Q 008773 435 EATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTS--HTLKPVPIAIGGP 508 (554)
Q Consensus 435 ~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t~--HT~~~VPfIi~gp 508 (554)
.+|..+|..+|..||++++.+++.+ |++|++||||.. +. ++|. ..+|.+ +.. ....+||||++++
T Consensus 418 n~YdnsI~ytD~~lg~ii~~Lk~~~~~~nT~iIy~SDHGe~--lg---e~g~--~~hg~~--y~~aP~~~~~VPliiw~s 488 (545)
T PRK11598 418 NTYDNTILYVDYIVDKAINLLKQHQDKFNTSLVYLSDHGES--LG---ENGI--YLHGLP--YAIAPDQQTHVPMLLWLS 488 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCeEEEEECcCCCc--cc---cCCc--ccCCCc--cccCccccccccEEEEEC
Confidence 4567899999999999999999864 799999999953 32 2331 023332 211 3567999999764
Q ss_pred C-CCCCceec-----c-cC-CCcccccHHHHHHHHhCCCCCCCCCC-Cccc
Q 008773 509 G-LPDDVKFR-----T-DL-PNGGLANVAATFINLHGYEAPSDYEP-SLIE 550 (554)
Q Consensus 509 ~-~~~~~~~~-----~-~~-~~g~L~DIAPTIL~llGi~~P~~m~G-SLl~ 550 (554)
+ .+++.... . .. ...+..||+||+|+++|++.|..+.| +++.
T Consensus 489 ~~~~~~~~~~~~~l~~~~~~~~~s~ddl~~TlL~l~gI~t~~y~~~~di~~ 539 (545)
T PRK11598 489 PDYQKRYGVDQQCLQKQAQTQDYSQDNLFSTLLGLTGVQTKEYQAADDILQ 539 (545)
T ss_pred cchhccccchhhhhhhhccCCceeHHhHHHHHHHHhCCCCCCCCCCCCccc
Confidence 3 22111110 0 00 12456799999999999999998888 7764
No 27
>PRK10649 hypothetical protein; Provisional
Probab=98.85 E-value=3e-08 Score=111.58 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEecCCCChhhhcccCCCCCCcccC--CCccccccCCCceeeEEEEcCCC
Q 008773 435 EATVVACKAADEAVKIIIDAIEKV--GGIYLVTADHGNAEDMVKRNKSGEPLLKD--GNIQVLTSHTLKPVPIAIGGPGL 510 (554)
Q Consensus 435 ~a~~~aIe~vD~~lgrLl~al~~~--gt~iIITSDHGn~e~m~~~d~~G~~~~~~--g~~~p~t~HT~~~VPfIi~gp~~ 510 (554)
..|..+|..+|..|+++++.+++. ++++|++||||.. ..+..+++ ++++ +. .++...+||||+++++.
T Consensus 427 ~~Y~nsI~y~D~~l~~ii~~Lk~~~~nt~iiy~SDHGe~--~~~~~~~~--~lG~~~~~----~~~~~~~VP~ii~~s~~ 498 (577)
T PRK10649 427 NDYDNANLYNDHVVASLIKDFKATDPNGFLVYFSDHGEE--VYDTPPHK--TQGRNEDN----PTRHMYTIPFLLWTSEK 498 (577)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCcc--cccCCccc--ccCCCCCC----CCcccceecEEEEECHH
Confidence 467789999999999999999975 4899999999964 11001111 0111 22 23446799999998532
Q ss_pred -CC--Cc---eecccCCCcccccHHHHHHHHhCCCCCCCCCC-Cccc
Q 008773 511 -PD--DV---KFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIE 550 (554)
Q Consensus 511 -~~--~~---~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G-SLl~ 550 (554)
++ .. ...+ ...+..|+.||+|+++|++.|..+.| |++.
T Consensus 499 ~~~~~~~~~~~~~~--~~~s~~Dl~~Tll~laGi~~~~~~~~~sl~~ 543 (577)
T PRK10649 499 WQAAHPRDFSQDVD--RKYSLAELIHTWSDLAGLSYDGYDPTRSLVN 543 (577)
T ss_pred HHhhCchhhhhhhc--CCeeHHhHHHHHHHHcCCCCCcCCcccCccc
Confidence 10 00 0111 13567899999999999999998888 8763
No 28
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=98.83 E-value=7e-08 Score=107.35 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEecCCCChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCC-C
Q 008773 435 EATVVACKAADEAVKIIIDAIEKV--GGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL-P 511 (554)
Q Consensus 435 ~a~~~aIe~vD~~lgrLl~al~~~--gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~-~ 511 (554)
.+|..+|..+|..|+++++.+++. ++++|++||||.. +. ++|.- .+|.|.........+||||+++|+. +
T Consensus 404 n~YdnsI~ytD~~l~~ii~~Lk~~~~~t~iIy~SDHGe~--lg---e~g~~--~hg~p~~~~~~~~~~VP~ii~~s~~~~ 476 (522)
T PRK09598 404 NAYDNTIFYNDYLLDKIISMLKNLKQPALMIYLSDHGES--LG---EGAFY--LHGIPKSIAPKEQYEIPFIVWASDSFK 476 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEccCccc--cc---cCCcc--cCCCCcCCCccccccccEEEEEChhhh
Confidence 456779999999999999999875 4899999999953 32 23310 2232111122345689999998763 2
Q ss_pred CCc-eecccCCCcccccHHHHHHHHhCCCCCCCC
Q 008773 512 DDV-KFRTDLPNGGLANVAATFINLHGYEAPSDY 544 (554)
Q Consensus 512 ~~~-~~~~~~~~g~L~DIAPTIL~llGi~~P~~m 544 (554)
++. ....+ ...+..||+||||+++|++.|.++
T Consensus 477 ~~~~~~~~~-~~~S~ddif~TlL~l~gv~t~~~~ 509 (522)
T PRK09598 477 KQHSIIQTQ-TPINQNVIFHSVLGVFDFKNPSAV 509 (522)
T ss_pred hhchhhhcC-CCchHHHHHHHHHHHcCCCCchhh
Confidence 110 01110 135678999999999999998653
No 29
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=98.82 E-value=8.4e-08 Score=107.34 Aligned_cols=189 Identities=13% Similarity=0.177 Sum_probs=105.3
Q ss_pred cccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhC-
Q 008773 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR- 413 (554)
Q Consensus 335 ~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~~~- 413 (554)
.+.+-++++++|+++.-++.... .|++|.+....+ +. +....... ..... +..-..+.+.+.+.|++.
T Consensus 318 ~~nlld~l~~aGy~t~w~SnQ~~----~w~~n~~~~~~~--~~--~~~~~~~~-~~~g~--~~~D~~LL~~l~~~L~~~~ 386 (558)
T PRK11560 318 EQNVFAVLKQLGFSSELFAMQSE----MWFYNNTMADNY--AY--REQIGAEP-RNRGK--PVDDMLLVDEMKQSLGRNP 386 (558)
T ss_pred cCCHHHHHHHCCCcEEEeecccc----eeeecCcccccc--hh--hhhccccc-CCCCC--CcChHHHHHHHHHHHHhcC
Confidence 46788999999999877754433 355553321212 11 11111110 00000 011123455666677543
Q ss_pred -CCcEEEEeCCCCcc---------CCC----------C----CCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCC
Q 008773 414 -RFHQVRVNLPNSDM---------VGH----------T----GDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHG 469 (554)
Q Consensus 414 -~~dfi~vnfan~Dm---------vGH----------t----g~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHG 469 (554)
+..|+++|+..+-. ..+ + ....+|..+|..+|..||++++.|++.+|+||+|||||
T Consensus 387 ~~~~~ivLH~~GSH~~Y~~RyP~~f~~F~p~~~~~~~~c~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~~nTivIy~SDHG 466 (558)
T PRK11560 387 DGKHLIILHTKGSHYNYTQRYPRSFARYQPECIGVDSGCSKAQLINSYDNSVLYVDHFISSVIDQLRDKKAIVFYAADHG 466 (558)
T ss_pred CCCeEEEEeccCCCcChhhcCCHhhhccCCcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEcCCC
Confidence 23578886544210 000 0 01245778999999999999999999899999999999
Q ss_pred ChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCC-C--CCc-----eeccc---CCCcccccHHHHHHHHhCC
Q 008773 470 NAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL-P--DDV-----KFRTD---LPNGGLANVAATFINLHGY 538 (554)
Q Consensus 470 n~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~-~--~~~-----~~~~~---~~~g~L~DIAPTIL~llGi 538 (554)
.. +. ++| . -+|.+.-.......+||||+++++. . ++. .+... -...+..||+||+|+++|+
T Consensus 467 e~--lg---e~~-~--lhg~~~~~~~~~~~~VPliv~~s~~~~~~p~~~~~~~~l~~~~~~~~~~s~~dlf~TlL~~~gv 538 (558)
T PRK11560 467 ES--IN---ERE-H--LHGTPREMAPPEQFRVPMMVWMSDKYLANPDNAQAFAQLKKQADMKVPRRHVELFDTILGCLGY 538 (558)
T ss_pred Cc--CC---CCc-c--cCCCCcccCCccCeeeCEEEEEccccccCCccchhHHHhccccccCCceeehhHHHHHHHHcCC
Confidence 63 31 222 1 1232100112256689999998432 1 110 01000 0124567999999999999
Q ss_pred CCCC
Q 008773 539 EAPS 542 (554)
Q Consensus 539 ~~P~ 542 (554)
+.|.
T Consensus 539 ~~p~ 542 (558)
T PRK11560 539 TSPD 542 (558)
T ss_pred CCCh
Confidence 9874
No 30
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=98.65 E-value=2.3e-07 Score=100.48 Aligned_cols=128 Identities=19% Similarity=0.251 Sum_probs=84.2
Q ss_pred HHHHHHhCCCcEEEEeCCCC---c-cCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChh
Q 008773 406 AKKAILSRRFHQVRVNLPNS---D-MVGHTGD-----IEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAE 472 (554)
Q Consensus 406 ai~~I~~~~~dfi~vnfan~---D-mvGHtg~-----~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e 472 (554)
+.+.-++.+|-|-++.+... | -..-+.. ...|..|+..+|++||++++.+++.| |+||||||||..
T Consensus 385 f~~~~~~d~PwFs~L~l~~~~~~~~~~s~q~~~~~~~~~~Y~~a~~~vD~~I~~vLe~L~~~~~L~NTvVIITs~HG~e- 463 (600)
T COG3083 385 FGRYRDEDNPWFSYLSLNSSHANDDPSSNQAKARPPFKNRYQNALREVDSQIGRVLEQLRNSGLLDNTVVIITADHGEE- 463 (600)
T ss_pred HHHhhccCCCceEEEEccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEEEECCCCcc-
Confidence 33333455688888877542 2 1112211 25778899999999999999997654 999999999963
Q ss_pred hhcccCCCCCCcccCCCccccccCC------CceeeEEEEcCCCCCCceecccCCCcccccHHHHHHH-HhCCCCCCC--
Q 008773 473 DMVKRNKSGEPLLKDGNIQVLTSHT------LKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFIN-LHGYEAPSD-- 543 (554)
Q Consensus 473 ~m~~~d~~G~~~~~~g~~~p~t~HT------~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~-llGi~~P~~-- 543 (554)
-+ + .+ .+ ...|. -..||++|.+|+.+++ .++. ..+-.||+||++. +||+..|..
T Consensus 464 Fn---e-~~------~~---ywG~~t~ysr~qlqVPlvihwpg~~~~-~v~~---lTsH~Dl~~tLMq~ll~V~np~~dY 526 (600)
T COG3083 464 FN---E-EE------QN---YWGHGTNYSRYQLQVPLVIHWPGTPAG-RVNH---LTSHLDLMTTLMQRLLGVSNPPSDY 526 (600)
T ss_pred cC---c-cc------cc---cccCCCccccceecccEEEEeCCCcch-hhcC---ccchhhhHHHHHHHHhcCCCChhhh
Confidence 22 1 11 00 12344 2479999999997443 2221 1234699999999 999998864
Q ss_pred CCC-Ccccc
Q 008773 544 YEP-SLIEV 551 (554)
Q Consensus 544 m~G-SLl~~ 551 (554)
-.| .|...
T Consensus 527 SqG~dLf~~ 535 (600)
T COG3083 527 SQGQDLFNE 535 (600)
T ss_pred hcccchhcc
Confidence 446 66543
No 31
>KOG3867 consensus Sulfatase [General function prediction only]
Probab=98.62 E-value=7.5e-08 Score=106.15 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChhhhcccCCCC---CCcccCCCccccccCCCceeeEEEE
Q 008773 434 IEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSG---EPLLKDGNIQVLTSHTLKPVPIAIG 506 (554)
Q Consensus 434 ~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e~m~~~d~~G---~~~~~~g~~~p~t~HT~~~VPfIi~ 506 (554)
...|..+|+.+|..||++++++++.| |+|+||||||.+.... ..++ .+ ..|..++ +.+..+++|-+..
T Consensus 268 ~~~y~~~V~~mD~~VG~ildaL~~~gl~nnTiv~FtSDnG~~~~~~--~~~~~~n~~--~~g~~~~-~weggir~~~~~~ 342 (528)
T KOG3867|consen 268 RGLYGDMVSEMDWSVGRILDALDDLGLANNTLVIFTSDNGGPLEGG--RGNGGSNGP--WNGIKKP-GWEGGIRVPGLAR 342 (528)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEeCCCCccccCc--cccccccCC--ccceecC-CccccCCCcchhc
Confidence 45677889999999999999999864 9999999999864432 1111 12 2333222 4778899999999
Q ss_pred cCCCCCCceecccCCCcccccHHHHHHHHhCCCCCCC--CCC-Ccccc
Q 008773 507 GPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD--YEP-SLIEV 551 (554)
Q Consensus 507 gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~--m~G-SLl~~ 551 (554)
+|+..+...... ...++.|+.||+++++|++.|.. .+| +|+++
T Consensus 343 ~p~~~~~g~v~~--e~~s~~D~~PTl~~lag~~~p~d~~idG~~l~p~ 388 (528)
T KOG3867|consen 343 WPGVVPAGQVSN--ELTSLLDILPTLADLAGGPLPQDRVIDGRDLLPL 388 (528)
T ss_pred Cccccccceecc--ccccccccchHHHHHcCCCCCcCceecccchHHH
Confidence 998632222222 14578899999999999999965 788 88764
No 32
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=98.61 E-value=2.1e-07 Score=105.95 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=115.3
Q ss_pred cccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhCC
Q 008773 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR 414 (554)
Q Consensus 335 ~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~~I~~~~ 414 (554)
+..+-.-+.++|.+..-.+...+-.+..=.|++. +-.||- .-.|+. .--.++.+.+-+.+++++
T Consensus 143 EDNfv~Ql~~~gk~vvflGDdTW~~LFp~~f~~s------------~s~pSf--nv~DLd--tVDn~v~~~if~~l~s~d 206 (895)
T KOG2126|consen 143 EDNFVRQLVLNGKSVVFLGDDTWTSLFPNQFNKS------------YSFPSF--NVHDLD--TVDNGVIEKIFKSLNSKD 206 (895)
T ss_pred hhHHHHHHHHCCCeEEEecCccHHHhChHhhcCC------------CCCCCC--CCcccc--ccchHHHHHhhhhhccCc
Confidence 3455555667798888777666644322222221 112221 112221 112468888888888888
Q ss_pred CcEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcccCCCCCCcccCCCccc
Q 008773 415 FHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQV 492 (554)
Q Consensus 415 ~dfi~vnfan~DmvGHtg--~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p 492 (554)
+|.++.||-+.|++||.. +-++..+.++++|++|+++++.+++ +|++||.+|||+. .+| .+|+
T Consensus 207 wdVlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~mde-dTlLvVmGDHGMt-------~nG----dHGG--- 271 (895)
T KOG2126|consen 207 WDVLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMDE-DTLLVVMGDHGMT-------DNG----DHGG--- 271 (895)
T ss_pred hHHHHHHHhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhcc-CeeEEEecCCCCC-------CCC----CCCC---
Confidence 999999999999999964 4478888899999999999999986 7999999999962 234 3333
Q ss_pred cccCCCceeeEEEEcCCCC-CCceecccCCCcccccHHHHHHHHhCCCCCCCCCC
Q 008773 493 LTSHTLKPVPIAIGGPGLP-DDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP 546 (554)
Q Consensus 493 ~t~HT~~~VPfIi~gp~~~-~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G 546 (554)
.+....+-+=|.. ++..+ ......++.......|+-||+.-+||+|.|=.-.|
T Consensus 272 dS~dEv~a~lf~y-SKk~~f~~lp~~~~~~~~~QIDLVptlalllGlPIPf~NlG 325 (895)
T KOG2126|consen 272 DSEDEVEATLFAY-SKKHRFALLPPENKVESIEQIDLVPTLALLLGLPIPFSNLG 325 (895)
T ss_pred ccHHHhhhheeEE-ecCccccCCCCCCCccceeeehhHhHHHHHhCCCCCccccc
Confidence 1333344453444 43211 00000000001345799999999999999977666
No 33
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=98.57 E-value=8.6e-08 Score=106.75 Aligned_cols=119 Identities=22% Similarity=0.202 Sum_probs=85.9
Q ss_pred HHhCCCcEEEEeCCCCccCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChhhhcccCCCCCC
Q 008773 410 ILSRRFHQVRVNLPNSDMVGHTGD--IEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEP 483 (554)
Q Consensus 410 I~~~~~dfi~vnfan~DmvGHtg~--~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e~m~~~d~~G~~ 483 (554)
....++|..++||-..|++||... ....-+..+++|+.+++|.+.+.+.. +++|+++|||+.|.. .||
T Consensus 187 ~~~~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~~~s~d~tllil~gDHGM~e~G----nHG-- 260 (760)
T KOG2125|consen 187 LNSSDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLMEHRSGDQTLLILCGDHGMTESG----NHG-- 260 (760)
T ss_pred hhhcchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEccccccccC----CCC--
Confidence 344669999999999999999753 33444568999999999999887643 799999999987653 233
Q ss_pred cccCCCccccccCCCceeeEEEEcCCC--CCC-ceecccCCCcccccHHHHHHHHhCCCCCCCCCC
Q 008773 484 LLKDGNIQVLTSHTLKPVPIAIGGPGL--PDD-VKFRTDLPNGGLANVAATFINLHGYEAPSDYEP 546 (554)
Q Consensus 484 ~~~~g~~~p~t~HT~~~VPfIi~gp~~--~~~-~~~~~~~~~g~L~DIAPTIL~llGi~~P~~m~G 546 (554)
|. .+.+|. +|+.+..++. .+. .... ......|++|||..++|+|+|..-.|
T Consensus 261 ----Gs---s~~ET~--s~l~~~~~N~~~~d~~~a~~---~rv~QiDl~pTI~~llgvpIP~~nvG 314 (760)
T KOG2125|consen 261 ----GS---SPGETS--SPLLFLLPNSNISDWLAAGL---ERVEQIDLAPTIALLLGVPIPKGNVG 314 (760)
T ss_pred ----CC---Cccccc--ccEEEEecCCCCcccchhcc---chhhhhhhHHHHHHHhCCCccCCCcc
Confidence 22 345554 6767666641 111 0111 13445799999999999999999888
No 34
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=98.30 E-value=8.8e-07 Score=91.95 Aligned_cols=70 Identities=27% Similarity=0.405 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHhc----CcEEEEecCCCChhh
Q 008773 404 ERAKKAILSRRFHQVRVNLPNSDMVGHT-G-DIEATVVACKAADEAVKIIIDAIEKV----GGIYLVTADHGNAED 473 (554)
Q Consensus 404 d~ai~~I~~~~~dfi~vnfan~DmvGHt-g-~~~a~~~aIe~vD~~lgrLl~al~~~----gt~iIITSDHGn~e~ 473 (554)
+.+...+++.+|||++++|..+|.+||. | +.+++.++++.+|++||+|++++++. ++.||||||||....
T Consensus 173 ~~~~~l~~~~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~~~~~~~~iiv~SDHG~~~~ 248 (365)
T PF01663_consen 173 DAAEYLIQKERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDENGLLEDTNIIVTSDHGMTPV 248 (365)
T ss_dssp HHHHHHHHTTTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTT-TTTEEEEEEES---EEE
T ss_pred HHHHHHHhhCCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEEccCccccc
Confidence 3455557777899999999999999993 3 45678899999999999999999986 389999999998644
No 35
>PRK10518 alkaline phosphatase; Provisional
Probab=98.29 E-value=7.5e-06 Score=89.87 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHh-CCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEecCCCChhhhc
Q 008773 398 KALEIAERAKKAILS-RRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEK-VGGIYLVTADHGNAEDMV 475 (554)
Q Consensus 398 sa~~vtd~ai~~I~~-~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~-~gt~iIITSDHGn~e~m~ 475 (554)
+-.+.|+++|+.|++ .+-+|++|.=+..|+.+|..+....+..+..+|+.|+..++..++ .+|+||+||||++.....
T Consensus 325 sLaeMT~kAI~~Lskn~~GFFLmVEGg~ID~a~H~nda~~~i~E~~~fD~AV~~A~~~~~~~~dTLVIVTADH~h~~~i~ 404 (476)
T PRK10518 325 TLAQMTDKAIDLLKKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARKDGNTLVIVTADHAHSSQII 404 (476)
T ss_pred CHHHHHHHHHHHhccCCCceEEEeeccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCCcceec
Confidence 457889999999964 346899999889999999999999999999999999999999998 569999999999875443
Q ss_pred ccC------------CCCCCcc---cCCCccccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCC
Q 008773 476 KRN------------KSGEPLL---KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYE 539 (554)
Q Consensus 476 ~~d------------~~G~~~~---~~g~~~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~ 539 (554)
..+ .+|.+.. ..|. .....||...||+..+||+.. .+.- .-...+|+-+|...|++.
T Consensus 405 g~~~~~~g~~~~~~~~dg~~~~l~y~~g~-g~s~~HtG~dV~v~A~GP~A~---~f~G---~~eqt~if~~m~~Al~~~ 476 (476)
T PRK10518 405 APDAKAPGLTQALNTKDGAVMVVSYGNSE-EDSQEHTGTQLRIAAYGPHAA---NVVG---LTDQTDLFYTMKDALGLK 476 (476)
T ss_pred CCCCCCCCcccccccCCCCeeEEEeccCC-CCCcCcCCceeEEEecCCccc---cccc---ceeccHHHHHHHHHhCCC
Confidence 100 0121100 0010 003479999999999999742 1210 113479999999999873
No 36
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=98.25 E-value=1.3e-05 Score=87.02 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChh
Q 008773 402 IAERAKKAILSRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAE 472 (554)
Q Consensus 402 vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg--~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e 472 (554)
+++.+++.+++.+|||+++ ..+|.+||.. ...+..++++.+|+.|++|++. |++|+||||||+.+
T Consensus 176 ~~~~a~~~l~~~~pdllyl--~~~D~~gH~~Gp~S~e~~~~~~~lD~~l~~L~~~----~~~vvvtaDHG~~~ 242 (408)
T TIGR02335 176 VLDAGLSLLTNERPDLMYL--STSDYVQHKHAPGEPESNAFYAAMDSRFKRYHEQ----GAIVAITADHGMNA 242 (408)
T ss_pred HHHHHHHHHhccCCcEEEe--cCcCccccccCCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCCCCcc
Confidence 4778888898888999875 6899999964 5678899999999999998773 89999999999753
No 37
>KOG2645 consensus Type I phosphodiesterase/nucleotide pyrophosphatase [General function prediction only]
Probab=98.15 E-value=7.4e-06 Score=88.62 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=73.1
Q ss_pred cCceEEecCCCcccccCCCCcceEeccCCCccccCCCccCCHHHHHHHHHH--HHHhCCCcEEEEeCCCCccCCCCCC--
Q 008773 358 FGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKK--AILSRRFHQVRVNLPNSDMVGHTGD-- 433 (554)
Q Consensus 358 yahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~Pemsa~~vtd~ai~--~I~~~~~dfi~vnfan~DmvGHtg~-- 433 (554)
..-.++||.|+. ..+ .+. .+.+. ..|.. ..+-.+..+.+++ .-++++++|+.+++.++|.+||...
T Consensus 126 ~kaa~~~wpg~~-v~~--~~~----~~~~~-~~~n~--~~~~~~~~~~i~~~~~~~~e~p~l~~~Y~~~pD~~gh~~Gp~ 195 (418)
T KOG2645|consen 126 RKVATFFWPGCE-VEI--HGY----IPDPY-DIYNQ--SVPLEERADTVLDLDLPEKERPDLLLLYVEEPDHSGHRYGPD 195 (418)
T ss_pred CceeEEecCCcc-ccc--ccc----ccccc-ccccc--cccHHHHHHHHhccccccccCCCceEEeccCCCccccccCCC
Confidence 444588998885 333 221 23321 22322 1122344444433 2235679999999999999999643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChhh
Q 008773 434 IEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAED 473 (554)
Q Consensus 434 ~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e~ 473 (554)
.+...++++.||..++.|++.|++.+ ..|||+||||+...
T Consensus 196 ~~~v~~~l~~vD~~i~~L~~~Lk~r~L~~~vNvIi~SDHGM~~~ 239 (418)
T KOG2645|consen 196 SPEVEKALKEVDDFIGYLIKGLKDRNLFEDVNVIIVSDHGMTDI 239 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccccccceEEEeecCCcccc
Confidence 45688999999999999999999876 68999999998654
No 38
>COG1368 MdoB Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=3.2e-05 Score=88.56 Aligned_cols=192 Identities=18% Similarity=0.173 Sum_probs=110.8
Q ss_pred ccccHHHHHHhCCcceeEeecccccCceEEecCCCcccccCCCCcceEeccCCCccccCCC------ccCCHHHHHHHHH
Q 008773 334 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ------PKMKALEIAERAK 407 (554)
Q Consensus 334 ~~~tl~evLs~~Gl~qlriaeteKyahvtfF~nGg~e~~f~~~ge~r~lvpsp~v~tyD~~------Pemsa~~vtd~ai 407 (554)
.-++++.+|++.|+++..+....+ .|||....-+. -|-+...-+ ..|+.. -..+-....++++
T Consensus 341 ~~~slp~iLk~~GY~t~a~hg~~~-----~fwNr~~~yk~--~Gfd~f~~~----~~~~~~~~~~~~~G~sD~~l~~~~~ 409 (650)
T COG1368 341 KYSSLPAILKQQGYKTAALHGGDG-----SFWNRKSFYKI--FGFDDFFDL----ESFDGNADSEIGWGLSDKDLFKESL 409 (650)
T ss_pred CcccHHHHHhcCCceEEEEeCCCc-----ceecHHHHHHh--cChhhccch----hhcCCCcccccCCCCchHHHHHHHH
Confidence 368999999999999999865544 57776532111 122111111 111111 1234456678888
Q ss_pred HHHHhCC-CcEEE-EeCCC------CccCC-------CCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEec
Q 008773 408 KAILSRR-FHQVR-VNLPN------SDMVG-------HTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTA 466 (554)
Q Consensus 408 ~~I~~~~-~dfi~-vnfan------~DmvG-------Htg--~~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITS 466 (554)
+.+++.+ |.|.+ +...| ++..- +.+ ....+.+++...|++++++++.+++.| +++++++
T Consensus 410 ~~l~~~~~Pfy~~~iTlsnH~Pf~~~~~~~~~~~~~~~~~~~~l~~y~~~~~y~D~al~~F~~~lkk~~~~~~sviv~~G 489 (650)
T COG1368 410 PLLKKLKKPFFSFVITLSNHGPFELPEGKRNELLEEPLSASTALANYLQAVHYADEALGQFIDKLKKSGLYKNSVIVLYG 489 (650)
T ss_pred HHHHhcCCChHheEEeccCCCCCCCChhhhcccccccCcCcccccchhhhhhhHHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 8887644 22222 22111 11111 111 235567789999999999999999885 8999999
Q ss_pred CCCChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCCC--CC
Q 008773 467 DHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPS--DY 544 (554)
Q Consensus 467 DHGn~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P~--~m 544 (554)
||.......... .....|. . ...--..+||+++..|+.+...... ..++..||+||++.++|++ +. .|
T Consensus 490 DH~~~~~~~~~~----~~~~~~~-~-~~~~~~~~vP~~i~~~g~~~~~~~~---~~~~qidi~pTil~l~gi~-~~~~~~ 559 (650)
T COG1368 490 DHYGISGNQNLA----MPKFLGK-S-YDIDMLQRVPLLIHAPGIKNKKKID---TVGGQLDIAPTILGLLGIS-TKSYAF 559 (650)
T ss_pred CCCCcchhhhhh----hhhhccc-c-cchhHHhcCCeEEEcCCCCcccccc---ccccccchhhHHHHHcCCC-Ccccee
Confidence 999753221000 0000110 0 0000123699999999864321222 2466789999999999998 54 34
Q ss_pred CC
Q 008773 545 EP 546 (554)
Q Consensus 545 ~G 546 (554)
-|
T Consensus 560 ~g 561 (650)
T COG1368 560 FG 561 (650)
T ss_pred ec
Confidence 45
No 39
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=98.04 E-value=5.2e-05 Score=83.38 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=77.2
Q ss_pred HHHHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecC-CCChhhhcccCC
Q 008773 406 AKKAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTAD-HGNAEDMVKRNK 479 (554)
Q Consensus 406 ai~~I~~~~-~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSD-HGn~e~m~~~d~ 479 (554)
+.+.++.++ |.+.++.- +.-.-+|.+.. .|+..|..|++|+++|++.+ |+||||+| ||.. . |
T Consensus 335 F~~Dv~~g~LPqvSfI~P-~~~~d~Hp~~s-----~v~~gD~~vg~vl~aL~~~p~w~NTlII~T~DENGG~---~--D- 402 (483)
T TIGR03397 335 FIAAIDAGKLPQVSFYKP-QGNLNEHAGYA-----DVAAGDRHIADVIAHLQKSPQWKNMVVIVTYDENGGF---W--D- 402 (483)
T ss_pred HHHHHHcCCCCcEEEEeC-CCCCCCCcCCC-----CHHHHHHHHHHHHHHHHhCccccCcEEEEEEECCCCc---C--c-
Confidence 455555555 66666552 22234565421 28899999999999999864 99999999 8852 1 1
Q ss_pred CCCCcccCCCccccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCCCC
Q 008773 480 SGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 541 (554)
Q Consensus 480 ~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~~P 541 (554)
+..+ .++. ......+||+||++|..+.|....+ .....||.|||.+++||+..
T Consensus 403 hv~p--Pk~~----~~ggG~RVP~IVisP~~k~G~v~~~---~~dh~SiL~Tie~~~GL~~L 455 (483)
T TIGR03397 403 HVAP--PKGD----RWGPGTRIPAIVVSPFAKKGYVDHT---PYDTTSILRFITRRFGLPPL 455 (483)
T ss_pred CCCC--CCcC----CCCCccEEEEEEEECCCCCCcEeCc---eeeeehHHHHHHHHhCCCCc
Confidence 1101 2332 3566789999999998754433221 23568999999999999983
No 40
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00078 Score=73.91 Aligned_cols=73 Identities=30% Similarity=0.332 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cEEEEecCCCC
Q 008773 398 KALEIAERAKKAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG-GIYLVTADHGN 470 (554)
Q Consensus 398 sa~~vtd~ai~~I~~~~-~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~g-t~iIITSDHGn 470 (554)
+-.+.++++|+.+++++ -+|++|.=...|+.+|..++...+.-++.+|+.+...++..++.+ |+||+||||-.
T Consensus 281 sLaeMt~kAi~~L~kn~~GFFLMVEGg~ID~a~Hand~~~~i~e~~~fd~Avq~al~fA~k~~~TLVIvTADH~t 355 (482)
T COG1785 281 SLAEMTEKAIDLLSKNKKGFFLMVEGGRIDWAGHANDPAGAIGETVAFDEAVQAALDFAEKDGNTLVIVTADHET 355 (482)
T ss_pred cHHHHHHHHHHHhccCCCceEEEEeccccchhhcCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccC
Confidence 44678999999997654 578888888899999999999999999999999999999998875 79999999953
No 41
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=97.49 E-value=0.00041 Score=75.53 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHh-CCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEecCCCCh
Q 008773 398 KALEIAERAKKAILS-RRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEK-VGGIYLVTADHGNA 471 (554)
Q Consensus 398 sa~~vtd~ai~~I~~-~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~-~gt~iIITSDHGn~ 471 (554)
+-.+.++++++.|++ .+-.|++|.=...|+.+|..+....+..+..+|+.|+..++.+++ .+|+||+||||++.
T Consensus 235 sL~eMt~~Al~~L~~~~~GFfLmVEgg~ID~a~H~nd~~~~i~E~~~fd~AV~~a~~~~~~~~dTLiiVTADH~~g 310 (419)
T smart00098 235 SLAEMTEVAIRLLSKNERGFFLMVEGGRIDHAHHENDACGALHETVDFDQAIQAALEFAKKEDETLVIVTADHSHV 310 (419)
T ss_pred CHHHHHHHHHHHhhcCCCceEEEEecccCChhhccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Confidence 456889999999964 457899999899999999999999999999999999999999984 46999999999865
No 42
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=97.10 E-value=0.00047 Score=75.21 Aligned_cols=74 Identities=27% Similarity=0.329 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHhC-CCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEecCCCCh
Q 008773 398 KALEIAERAKKAILSR-RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKV-GGIYLVTADHGNA 471 (554)
Q Consensus 398 sa~~vtd~ai~~I~~~-~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~-gt~iIITSDHGn~ 471 (554)
+-.+.+.++++.|.++ +-.|++|.=...|+.+|..+....+..+..+|+.|+..++.+++. +|+||+||||++.
T Consensus 238 sL~eMt~~Al~~L~~~~~GFfLmVEg~~ID~a~H~nd~~~~i~E~~~fD~AV~~a~~~~~~~~~TLiIVTADHetg 313 (421)
T PF00245_consen 238 SLAEMTEKALEVLSKNPKGFFLMVEGGRIDWAGHANDAARAIEETLEFDDAVKVALDFAEKDDDTLIIVTADHETG 313 (421)
T ss_dssp HHHHHHHHHHHHHTTSTT-EEEEEEETHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEESSEES
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEecccchhhhhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEecccCc
Confidence 4467899999999643 468889998889999999999999999999999999999999654 5999999999875
No 43
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=96.94 E-value=0.0006 Score=74.56 Aligned_cols=60 Identities=27% Similarity=0.406 Sum_probs=54.7
Q ss_pred hCCCcEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCh
Q 008773 412 SRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNA 471 (554)
Q Consensus 412 ~~~~dfi~vnfan~DmvGHtg--~~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~ 471 (554)
..+||++++++.+.|.+||.. ..+++..+++.+|..++++++.+++.+ +.++|+||||..
T Consensus 215 ~~~p~~~l~~~~~iD~~~H~~G~~s~~~~~~~~~~d~~l~~ll~~l~~~~~~~~~~~ii~sDHG~~ 280 (450)
T COG1524 215 RADPDLLLVYLPNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKKRGLYEEYLVIITSDHGMS 280 (450)
T ss_pred ccCcchhhhhccccchhhhccCCCCHHHHhhhhhhhhhHHHHHHHHHhhccccceEEEEecccccc
Confidence 357999999999999999964 467889999999999999999999987 999999999986
No 44
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=96.92 E-value=0.0022 Score=61.91 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCCcEEEEeCCCCccCCCCC--C---HHHHHHHHH--HHHHHHHHHHHHHHhcCcEEEEecCCCCh
Q 008773 413 RRFHQVRVNLPNSDMVGHTG--D---IEATVVACK--AADEAVKIIIDAIEKVGGIYLVTADHGNA 471 (554)
Q Consensus 413 ~~~dfi~vnfan~DmvGHtg--~---~~a~~~aIe--~vD~~lgrLl~al~~~gt~iIITSDHGn~ 471 (554)
...+++.+.+...|..||.. . .++..++|+ .....|.+++..+.+.++.|+||||||+-
T Consensus 110 ~~~~vv~vv~n~ID~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~li~~l~~~~~~V~ITsDHG~v 175 (181)
T PF08665_consen 110 KGTRVVYVVHNFIDDLGHKRKSEQLGFEAMYRAIELWWFEHELRSLIKELRNAGRRVVITSDHGFV 175 (181)
T ss_pred CCCCEEEEEEcchhhhhCcccccchhHHHHHHHHhhhhhhHHHHHHHHHHHhcCceEEEECCCCCE
Confidence 45789999999999999932 2 233334444 11125666777777778999999999984
No 45
>KOG2124 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=96.61 E-value=0.0034 Score=72.45 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=81.6
Q ss_pred cEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHh----cCcEEEEecCCCChhhhcccCCCCCCcccCCC
Q 008773 416 HQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEK----VGGIYLVTADHGNAEDMVKRNKSGEPLLKDGN 489 (554)
Q Consensus 416 dfi~vnfan~DmvGHtg--~~~a~~~aIe~vD~~lgrLl~al~~----~gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~ 489 (554)
=..++|....|-.||.. +...++..++.+|+.|.++++..++ ..|.-++|||||+..-. .|| .|.
T Consensus 199 vVfflhLlg~dt~gH~~~P~s~~y~~nl~~~d~~i~~~y~l~e~~fnD~kTayi~TaDhgms~~g----sHg-----~G~ 269 (883)
T KOG2124|consen 199 IVFFLHLLGIDTAGHAHRPYSVEYRENLKYTDKGIRELYDLFENYFNDGKTAYIFTADHGMSDFG----SHG-----DGH 269 (883)
T ss_pred eEEEEeecCcCccccccCCCcHHHHHHhhcCCccHHHHHHHHHHHhcCCcceEEEehhccccccc----ccC-----CCC
Confidence 45668999999999954 5688999999999999999988875 23899999999975322 232 232
Q ss_pred ccccccCCCceeeEEEEcCCCCCC-----ceecc-c---C--CCcccccHHHHHHHHhCCCCCCCCCC
Q 008773 490 IQVLTSHTLKPVPIAIGGPGLPDD-----VKFRT-D---L--PNGGLANVAATFINLHGYEAPSDYEP 546 (554)
Q Consensus 490 ~~p~t~HT~~~VPfIi~gp~~~~~-----~~~~~-~---~--~~g~L~DIAPTIL~llGi~~P~~m~G 546 (554)
-+..+.|++..|.|++.. ....+ . . .+-..+||||-+=.+.|++.|..--|
T Consensus 270 ------~~~~~TPlv~WGaGik~~~~n~~~~~~~~~~~~~~~~dl~Qa~IApLMS~LiGlp~P~Nsvg 331 (883)
T KOG2124|consen 270 ------PENTRTPLVAWGAGIKYPVPNSEQNFDEYSLTEIKRHDLNQADIAPLMSYLIGLPPPVNSVG 331 (883)
T ss_pred ------cccccChHHHhcCCCCccCCCCCcCCccccccccchhhhhHHHHHHHHHHHhCCCCcccchh
Confidence 233478999999876311 11111 0 0 01234799999999999999986333
No 46
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=96.35 E-value=0.0052 Score=66.44 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=47.5
Q ss_pred CCCCCcEEEEEEeccCCCCCCCC--CccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 008773 12 LSRNNIVAVVVLDGWGEFKPDKY--NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (554)
Q Consensus 12 ~~~~~~~~L~ilDG~G~~~~~~~--Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~i 84 (554)
.++.+++|+||+||.|-.+-.++ =.++.|+|||||+|.++--. |..==.| +|.-=-|||+||+|
T Consensus 4 ~~~~~K~v~ii~DGmgD~p~~e~gkTPLe~A~tPnlD~lA~~G~~--------Gl~~~v~-~G~~pGSD~a~lsl 69 (395)
T PRK04135 4 QKNDSKIVLLVLDGLGGLPHPENGKTELEAAKTPNLDALAKESDL--------GLLIPVL-PGITPGSGPGHLGL 69 (395)
T ss_pred ccCCCcEEEEEecCCCCCCCCCCCCChhhccCCCChHHHHHcCCc--------ccceeeC-CCCCCCcHHHhhhh
Confidence 45567799999999998865443 38999999999999887422 2222234 56666699999986
No 47
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=96.19 E-value=0.0081 Score=70.87 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=47.4
Q ss_pred CCCcEEEEeCCCCccCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCh
Q 008773 413 RRFHQVRVNLPNSDMVGHTGD-----IEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNA 471 (554)
Q Consensus 413 ~~~dfi~vnfan~DmvGHtg~-----~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~ 471 (554)
...++++++....|..||... +++..++++.++.+|++|++.+. +..|+||||||..
T Consensus 568 ~~~~~vyiY~~~ID~~g~~~~~e~~~f~a~~~~l~el~~~v~~l~~~l~--~~~i~iTADHGfi 629 (844)
T TIGR02687 568 RDKRVIYIYHNKIDATGDKQSSEENVFEAVEETIVELKKLVKYLINRLN--GTNIIVTADHGFL 629 (844)
T ss_pred cCCcEEEEecCccchhhcccCCcchHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECCCccc
Confidence 347899999999999999642 34677889999999999988765 5699999999975
No 48
>KOG4126 consensus Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.026 Score=62.23 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCChhhhcc
Q 008773 398 KALEIAERAKKAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVK 476 (554)
Q Consensus 398 sa~~vtd~ai~~I~~~~-~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~e~m~~ 476 (554)
+-.+.++++++.|++.. =.|++|.=.-.||..|.......+.-..++|+.+..-++..++.+|++|+||||...-.+
T Consensus 326 sL~eMte~Al~vL~~~~~GffLfVEGgrID~ghH~~~a~~aL~Et~ef~~Aiq~a~~~t~~~dTLivvTaDHsh~~s~-- 403 (529)
T KOG4126|consen 326 SLSEMTEKALEVLSKNSKGFFLFVEGGRIDHGHHETDARQALDETLEFDKAIQRALELTSEEDTLIVVTADHSHTFSI-- 403 (529)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEecccccccccccHHHHHHHHHHHHHHHHHHHHHhcCccCCEEEEecccccceee--
Confidence 45688999999997653 467888877899999988877777788889999999999999999999999999976333
Q ss_pred cCCCCCCcc---cCCCccccccCCCceeeEEEE
Q 008773 477 RNKSGEPLL---KDGNIQVLTSHTLKPVPIAIG 506 (554)
Q Consensus 477 ~d~~G~~~~---~~g~~~p~t~HT~~~VPfIi~ 506 (554)
.|+|.| ..|-. .-.|..+.+|.-+.
T Consensus 404 ---~GYp~Rg~~i~gla--~~~~~~d~~py~~L 431 (529)
T KOG4126|consen 404 ---NGYPLRGSSILGLA--PAQHRIDGLPYTTL 431 (529)
T ss_pred ---cCCCcCCCCccccC--cccccccCCceeEE
Confidence 455544 12211 11245567776543
No 49
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=95.75 E-value=0.012 Score=63.98 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=44.6
Q ss_pred cEEEEEEeccCCCCCCC---CCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 008773 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (554)
Q Consensus 17 ~~~L~ilDG~G~~~~~~---~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~i 84 (554)
++||||+||.|-.+-.+ .=.++.|+|||||+|.++--. -+++. .| +|.-=-||++||.|
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~--Gl~~~------v~-~g~~pgSd~a~lsl 63 (396)
T TIGR02535 2 KYIILIGDGMADWPLEELGGRTPLQVANTPNMDKLAKRGRC--GLLRT------VP-EGFPPGSDVANMSL 63 (396)
T ss_pred CEEEEEecCCCCCcccccCCCChhhccCCCcHHHHHhcCCC--cceee------cC-CCCCCCcHHHHHHh
Confidence 58999999999887433 248999999999999887433 33332 44 56667799999976
No 50
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=95.60 E-value=0.014 Score=63.40 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=44.8
Q ss_pred cEEEEEEeccCCCCCCC---CCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 008773 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (554)
Q Consensus 17 ~~~L~ilDG~G~~~~~~---~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~i 84 (554)
++|+||+||.|-.+-.+ .=.++.|+|||||+|.++-=. -+++ =.| +|.-=-|||+||+|
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~--Gl~~------~v~-~g~~pgSd~a~lsl 63 (395)
T PRK04200 2 KYIILIGDGMADEPIEELGGKTPLQAAKTPNMDKMAREGRV--GLAK------TVP-EGFPPGSDVANMSI 63 (395)
T ss_pred CEEEEEecCCCCCcccccCCCCccceeCCCchHHHHhcCCc--ccce------ecC-CCCCCCcHHHHHHh
Confidence 58999999999876433 248999999999999887423 2333 245 67777899999986
No 51
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=95.11 E-value=0.028 Score=61.41 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=44.5
Q ss_pred cEEEEEEeccCCCCCCC---CCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 008773 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (554)
Q Consensus 17 ~~~L~ilDG~G~~~~~~---~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~i 84 (554)
++||||+||.|-.+-.+ .=.++.|+|||||+|.++--. |..-=.| +|.-=-|||+||+|
T Consensus 4 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~--------Gl~~~v~-~G~~pgSd~a~lsl 65 (412)
T PRK04024 4 KILLIILDGLGDRPVKELGGKTPLEAANTPNMDKLAKEGIC--------GLMDPIS-PGVRPGSDTAHLAI 65 (412)
T ss_pred cEEEEEecCCCCCcccccCCCChhhccCCCChHHHHHcCCc--------ccceeeC-CCCCCCcHHHHhhh
Confidence 69999999999886543 348999999999999887422 3322334 56666799999986
No 52
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=94.21 E-value=0.041 Score=59.80 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=42.2
Q ss_pred EEEEEeccCCCCCCC---CCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 008773 19 AVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (554)
Q Consensus 19 ~L~ilDG~G~~~~~~---~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~i 84 (554)
|+||+||.|-.+-.+ .=.++.|+|||||+|.++--. |..-=.| +|.-=-||++||+|
T Consensus 1 v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~--------Gl~~~v~-~G~~pgSd~a~l~l 60 (396)
T TIGR00306 1 VLIIIDGLADRPLEELDGKTPLQVAKTPNMDRLAEEGIC--------GLMRTIK-EGIRPGSDTAHLSI 60 (396)
T ss_pred CEEEecCCCCCcccccCCCCchhccCCCChHHHHhcCCe--------eeeeeeC-CCCCCCchhhhhhh
Confidence 589999999886533 248999999999999887422 2222234 56666799999986
No 53
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=90.25 E-value=0.58 Score=53.12 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEecCCCChhhhcccCCCCCCcccCCCccccccCCCceeeEEEEcCCC--
Q 008773 435 EATVVACKAADEAVKIIIDAIEKV--GGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL-- 510 (554)
Q Consensus 435 ~a~~~aIe~vD~~lgrLl~al~~~--gt~iIITSDHGn~e~m~~~d~~G~~~~~~g~~~p~t~HT~~~VPfIi~gp~~-- 510 (554)
..|--.|...|..|.++++.|+++ ++.+|..||||-+ .. ++|. .-+|.|...-.-...+||||++....
T Consensus 419 N~YDNtilYtD~~L~~vi~~Lk~~~~~~~liY~SDHGEs--lg---En~~--ylhg~p~~~ap~~q~~VP~i~w~S~~~~ 491 (555)
T COG2194 419 NCYDNTILYTDYFLSKLIDQLKDKKDNTSLIYFSDHGES--LG---ENGP--YLHGTPYEIAPQEQYHVPFIVWSSDKFQ 491 (555)
T ss_pred HhhhchhhhhHHHHHHHHHHHHhCCCCeEEEEEcCccHh--hc---cCCc--ccccCcccCCchhheeeeEEEEEChHHH
Confidence 344557999999999999999988 5799999999953 32 2220 01232200001123479999987641
Q ss_pred -CCCceecccCC-------CcccccHHHHHHHHhCCCCC
Q 008773 511 -PDDVKFRTDLP-------NGGLANVAATFINLHGYEAP 541 (554)
Q Consensus 511 -~~~~~~~~~~~-------~g~L~DIAPTIL~llGi~~P 541 (554)
+.+......|. ..+..++.-|+|.+++...+
T Consensus 492 ~~~~~~~~~~c~~~~~~~~~~~~d~lf~s~lg~~~~~~~ 530 (555)
T COG2194 492 QKHPRQKDLRCLNYFAQELSYSHDNLFHSLLGVSGVKTG 530 (555)
T ss_pred hhhhhhhHHHHHHHhhhccchhHHHhHhhccCccccccc
Confidence 11100100110 12346999999999998876
No 54
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=89.92 E-value=2.1 Score=46.13 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCChhhhcccCCCCCCcccCC
Q 008773 413 RRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDG 488 (554)
Q Consensus 413 ~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~e~m~~~d~~G~~~~~~g 488 (554)
....+++|++..-|. |.........-+..+|+.|..+++.|++.| ++|+++||-|-.-. .++ ..|
T Consensus 244 ~g~~v~~V~~gGwDT--H~~~~~~~~~ll~~L~~alaaf~~dL~~~g~~d~t~vv~~SEFGRt~~-----~N~----~~G 312 (392)
T PF07394_consen 244 AGVRVVFVSLGGWDT--HSNQGNRHARLLPELDQALAAFIQDLKERGLLDDTLVVTMSEFGRTPR-----ENG----SGG 312 (392)
T ss_pred cCCEEEEECCCCccC--ccccHhHHHHHHHHHHHHHHHHHHHHHhcCCcCceEEEEeeecCCCcc-----cCC----CCC
Confidence 456888898887675 444445556668999999999999999865 89999999996311 222 112
Q ss_pred CccccccCCCceeeEEEEcCCCCCCceecc--cCC------CcccccHHHHHHHHhCCCCC
Q 008773 489 NIQVLTSHTLKPVPIAIGGPGLPDDVKFRT--DLP------NGGLANVAATFINLHGYEAP 541 (554)
Q Consensus 489 ~~~p~t~HT~~~VPfIi~gp~~~~~~~~~~--~~~------~g~L~DIAPTIL~llGi~~P 541 (554)
|.|-..-=+.++.|.+++.|..+.+ .+. .....|+..|++..+|++.-
T Consensus 313 -----tDH~g~g~~~~v~GGgv~gG~v~G~~p~l~~~~~~~~~~~~dl~~t~~~~~~~d~~ 368 (392)
T PF07394_consen 313 -----TDHWGWGGSMLVAGGGVKGGRVYGETPSLGEDPLDNPVSPRDLYATRLLPLGIDPR 368 (392)
T ss_pred -----CCCCCCcceEEEeCCCcCCCcEeCCCCCcccccccCCcChhhccCCeeeccccChH
Confidence 6772223457788887755433332 110 11234888998888887655
No 55
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=86.46 E-value=2.2 Score=42.12 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=51.4
Q ss_pred ceEEEEeecCCCc-cccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEee
Q 008773 123 TLHLIGLLSDGGV-HSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGG 201 (554)
Q Consensus 123 ~lHl~GL~Sdggv-Hsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~~~~iasv~G 201 (554)
.-.++=|||||.- -+-++.+.+-.++|++.|| + ||.|.=|-. =++.+..+++. -.|
T Consensus 111 ~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV-~--iytIgiG~~---------d~~~l~~iA~~-----------tgG 167 (191)
T cd01455 111 DEAIVIVLSDANLERYGIQPKKLADALAREPNV-N--AFVIFIGSL---------SDEADQLQREL-----------PAG 167 (191)
T ss_pred CCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCC-E--EEEEEecCC---------CHHHHHHHHhC-----------CCC
Confidence 3468999999996 5566888876889999998 3 455543431 02223333332 149
Q ss_pred cccccccCCCCChHHHHHHHHHHHh
Q 008773 202 RMYVTMDRYENDWDVVKRGWDAQVL 226 (554)
Q Consensus 202 R~y~aMDR~d~rw~r~~~ay~~~~~ 226 (554)
|||+|.|. +-.++.|+.|..
T Consensus 168 ~~F~A~d~-----~~L~~iy~~I~~ 187 (191)
T cd01455 168 KAFVCMDT-----SELPHIMQQIFT 187 (191)
T ss_pred cEEEeCCH-----HHHHHHHHHHHH
Confidence 99988777 788888888763
No 56
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=85.89 E-value=6.1 Score=42.55 Aligned_cols=119 Identities=12% Similarity=0.003 Sum_probs=55.6
Q ss_pred HHHHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CcEEEEecCCCCh--hhhcccC
Q 008773 406 AKKAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKV----GGIYLVTADHGNA--EDMVKRN 478 (554)
Q Consensus 406 ai~~I~~~~-~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~----gt~iIITSDHGn~--e~m~~~d 478 (554)
+.+.+++++ |.|.++.- +.-.-+|-+.. .+..=|..|++++++|... +++||||=|-+.- +.. .
T Consensus 246 f~~d~~~g~LP~~sfI~p-~~~~d~Hp~~~-----~~~~gd~~l~~vv~ai~~sp~W~~T~iiIt~DE~gG~~DHV---~ 316 (376)
T PF04185_consen 246 FYADLANGTLPQVSFIEP-NMCNDMHPPYS-----VIADGDAFLARVVEAIRNSPYWKNTAIIITYDENGGFYDHV---P 316 (376)
T ss_dssp HHHHHHTT---SEEEEE---GGGS--TTT-------HHHHHHHHHHHHHHHHCSTTGGGEEEEEEES--TT---------
T ss_pred HHHHHHcCCCCceEEEEe-cCcCCCCCCCC-----chhHHHHHHHHHHHHHhcCcCcCCeEEEEEEecCCCcCCCC---C
Confidence 334444444 77777764 22223454421 1466788999999999864 3788888775421 111 0
Q ss_pred CCCCCcccCCCc----cccccC-CCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHHHhCCC
Q 008773 479 KSGEPLLKDGNI----QVLTSH-TLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYE 539 (554)
Q Consensus 479 ~~G~~~~~~g~~----~p~t~H-T~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~llGi~ 539 (554)
+.. .....+ .+.... -+.+||+|+++|-++.|....+ ...-.-|.-||-+++|||
T Consensus 317 pp~---~~~~~~~~~~g~~~~~g~G~RVP~ivISP~~k~G~v~~~---~ydh~Silrtie~~~gLP 376 (376)
T PF04185_consen 317 PPR---SPVPNPDEWVGPFGFDGLGPRVPAIVISPYAKGGTVDHT---PYDHTSILRTIEERFGLP 376 (376)
T ss_dssp -------TTTT------STT------B--EEEESTTB-TTEEE------EETHHHHHHHHHHHT--
T ss_pred CCC---CCccccccccccCCCCCccccCCeEEeCCCCCCCcEeCC---ccchhHHHHHHHHHhCCC
Confidence 000 000000 000011 1468999999998765543321 234468999999999986
No 57
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.96 E-value=3.7 Score=41.88 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=95.5
Q ss_pred CCCcEEEEEEeccCCCCCCCC------CccccCCCCcHHHHHhhCCCCceeeecccccc--CCCCC-CCCCcchhhhccc
Q 008773 14 RNNIVAVVVLDGWGEFKPDKY------NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAV--GLPTE-DDMGNSEVGHNAL 84 (554)
Q Consensus 14 ~~~~~~L~ilDG~G~~~~~~~------Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~V--GLp~~-gqmGNSEVGH~~i 84 (554)
.++|-+-||+||+|++..... =.|..|=-|+-.++.+.+ ..++++|..| =+|=+ -.-=++|-|+++.
T Consensus 26 ~~~~klaIVIddlG~~~~~~~~i~~Lp~eVTlA~~P~~~~~~~~~----~~A~~~G~evlih~PmeP~~~~~~e~gtL~~ 101 (250)
T COG2861 26 ARGPKLAIVIDDLGLSQTGTQAILALPPEVTLAFAPFAPHAREWA----QKARNAGHEVLIHMPMEPFSYPKIEPGTLRP 101 (250)
T ss_pred CCCceEEEEECCccccHHHHHHHHhCCccceEEecCCCchhHHHH----HHHHhcCCEEEEeccCCcccCCCCCCCCccc
Confidence 566788899999999977655 134566667777776654 4577788777 33410 0002567776665
Q ss_pred CCccccccchHHHHHHHhc-----------CC-CcCchh-HhhhhhhcCCCceEEEEeecCCCccccHHhHHHHHHHHHH
Q 008773 85 GAGRIFAQGAKLVDLALAS-----------GK-IYQDEG-FNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASE 151 (554)
Q Consensus 85 GaGRvv~q~~~ri~~~i~~-----------g~-~~~n~~-~~~~~~~~~~~~lHl~GL~SdggvHsh~~hl~al~~~a~~ 151 (554)
+-= ..+-..||.+|.++ || |-+|+. ++.+++.++..-|-|+ |-|- +-+-.+ -++|++
T Consensus 102 ~~s--~~e~~~rl~~a~~~v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~r~l~fl----Ds~T---~a~S~a-~~iAk~ 171 (250)
T COG2861 102 GMS--AEEILRRLRKAMNKVPDAVGLNNHMGSRFTSNEDAMEKLMEALKERGLYFL----DSGT---IANSLA-GKIAKE 171 (250)
T ss_pred CCC--HHHHHHHHHHHHhhCccceeehhhhhhhhcCcHHHHHHHHHHHHHCCeEEE----cccc---cccchh-hhhHhh
Confidence 421 22335566666654 33 334544 4446666622123332 2222 112223 568899
Q ss_pred cCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 008773 152 RGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (554)
Q Consensus 152 ~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~ 187 (554)
-||+.+.=|.|+|+-|+ +.+-.+-++.++...++.
T Consensus 172 ~gVp~~~rdvfLD~e~~-~~~V~kql~~~~~~Ark~ 206 (250)
T COG2861 172 IGVPVIKRDVFLDDEDT-EAAVLKQLDAAEKLARKN 206 (250)
T ss_pred cCCceeeeeeeecCcCC-HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 666666666666654443
No 58
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=81.98 E-value=0.87 Score=49.41 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=23.4
Q ss_pred cccccHHHHHHHHhCCCCCCC-CCC-Cccc
Q 008773 523 GGLANVAATFINLHGYEAPSD-YEP-SLIE 550 (554)
Q Consensus 523 g~L~DIAPTIL~llGi~~P~~-m~G-SLl~ 550 (554)
.++.|||||||.|+|++.|.. +.| +++.
T Consensus 439 ~~IyDvaPTIL~L~gi~~~~~~~~G~~l~k 468 (471)
T COG3379 439 VSIYDVAPTILKLYGINCPSDEKIGRELVK 468 (471)
T ss_pred eeeEeechHHHHHhCCCCCccccccchhhc
Confidence 467899999999999999965 668 7654
No 59
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=80.74 E-value=7.5 Score=43.63 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCh
Q 008773 440 ACKAADEAVKIIIDAIEKVG----GIYLVTADHGNA 471 (554)
Q Consensus 440 aIe~vD~~lgrLl~al~~~g----t~iIITSDHGn~ 471 (554)
.+..+|..+-+.++.+.+.| ++|||.||||.-
T Consensus 310 ~~~~~D~~~~~~l~~~~~~g~l~nT~vi~~SDHG~R 345 (497)
T PF02995_consen 310 GPSSLDDDLLDFLEKLQEEGVLDNTFVIFMSDHGLR 345 (497)
T ss_pred hhHHHHHHHHHHHHHhhhcCcccccEEEEEcCCCcc
Confidence 36889999999999998874 899999999973
No 60
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.44 E-value=9.5 Score=36.00 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=54.9
Q ss_pred HhHHHHHHHHHHcCCCeEEEEEeecCCCCCC---------CchHHHHHHHHHHHHHHhcCCCCceEEEEeecc--ccccc
Q 008773 140 DQLQLLLKGASERGAKRIRLHILTDGRDVLD---------GSSVGFVETIEKDLAELRGKGVDAQIASGGGRM--YVTMD 208 (554)
Q Consensus 140 ~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p---------~s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~--y~aMD 208 (554)
+.+..+.+++++.|++-+.+|+.+....... +.+.+++++..+.++.+ |+. .|.+.+|++ + .-+
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~l---g~~-~i~~~~g~~~~~-~~~ 101 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRL---GAK-YIVVHSGRYPSG-PED 101 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHH---TBS-EEEEECTTESSS-TTS
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHh---CCC-ceeecCcccccc-cCC
Confidence 4678999999999998788999998888643 12367777777777777 774 778888843 2 111
Q ss_pred CCCCChHHHHHHHHHHH
Q 008773 209 RYENDWDVVKRGWDAQV 225 (554)
Q Consensus 209 R~d~rw~r~~~ay~~~~ 225 (554)
-++.+|+++.+.++.++
T Consensus 102 ~~~~~~~~~~~~l~~l~ 118 (213)
T PF01261_consen 102 DTEENWERLAENLRELA 118 (213)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 11445666555555444
No 61
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=73.79 E-value=13 Score=35.93 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=43.6
Q ss_pred eEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecc
Q 008773 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRM 203 (554)
Q Consensus 124 lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~ 203 (554)
-+++=|+|||.-+--. -+.++++.++++|| +|++=.| |-+ ++.|++ +++. -.|||
T Consensus 108 ~~iiil~sd~~~~~~~-~~~~~~~~l~~~~I-~v~~Igi--G~~---------~~~L~~-ia~~-----------tgG~~ 162 (183)
T cd01453 108 REVLIIFSSLSTCDPG-NIYETIDKLKKENI-RVSVIGL--SAE---------MHICKE-ICKA-----------TNGTY 162 (183)
T ss_pred eEEEEEEcCCCcCChh-hHHHHHHHHHHcCc-EEEEEEe--chH---------HHHHHH-HHHH-----------hCCee
Confidence 4466678887654221 24567889999998 4666566 411 122222 2332 25999
Q ss_pred cccccCCCCChHHHHHHHHHHH
Q 008773 204 YVTMDRYENDWDVVKRGWDAQV 225 (554)
Q Consensus 204 y~aMDR~d~rw~r~~~ay~~~~ 225 (554)
|.+.|. +.+...|..++
T Consensus 163 ~~~~~~-----~~l~~~~~~~~ 179 (183)
T cd01453 163 KVILDE-----THLKELLLEHV 179 (183)
T ss_pred EeeCCH-----HHHHHHHHhcC
Confidence 988887 67777776543
No 62
>PRK09453 phosphodiesterase; Provisional
Probab=68.74 E-value=15 Score=35.10 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=41.2
Q ss_pred EEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE--eecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeec
Q 008773 127 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI--LTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGR 202 (554)
Q Consensus 127 ~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~--~~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR 202 (554)
++++|| +|...+.+.++++.+++.++..| ||+ +.|.-...+.......+++.+.+++. +. ++..|.|-
T Consensus 3 i~viSD--~Hg~~~~~~~~l~~~~~~~~d~i-i~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~v~~V~GN 72 (182)
T PRK09453 3 LMFASD--THGSLPATEKALELFAQSGADWL-VHLGDVLYHGPRNPLPEGYAPKKVAELLNAY---AD--KIIAVRGN 72 (182)
T ss_pred EEEEEe--ccCCHHHHHHHHHHHHhcCCCEE-EEcccccccCcCCCCccccCHHHHHHHHHhc---CC--ceEEEccC
Confidence 578888 89999999999999999888654 774 33321111222111234455555554 33 56666664
No 63
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=63.82 E-value=1.2e+02 Score=35.72 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-----CcEEEEecCCCC--hhh
Q 008773 402 IAERAKKAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKV-----GGIYLVTADHGN--AED 473 (554)
Q Consensus 402 vtd~ai~~I~~~~-~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~-----gt~iIITSDHGn--~e~ 473 (554)
+.+.+.+-++.++ |.+.++.- +...-.|-+.. +..=+..|.+++++|..+ .|+||||=|-.. .+.
T Consensus 273 ~~~~f~~Dv~~g~LP~VS~I~p-~~~~seHP~~~------~~~G~~~i~~vl~aL~~nP~vW~~TvliItyDE~gGffDH 345 (690)
T TIGR03396 273 LLDQLRADVQAGTLPQVSWIVA-PAAYSEHPGSS------PAYGAWYVSRVLDALTANPEVWSKTVLLLNYDENDGFFDH 345 (690)
T ss_pred HHHHHHHHHHcCCCCeEEEEec-CCCCCCCCCCC------hHHHHHHHHHHHHHHHhChhhhhceEEEEEEeCCCCcccC
Confidence 3345555555554 66666542 22234554321 223345788888888753 489999987532 111
Q ss_pred hcc-----cCCC----CCCcc-cCCCc---------cccccCCCceeeEEEEcCCCCCCceecccCCCcccccHHHHHHH
Q 008773 474 MVK-----RNKS----GEPLL-KDGNI---------QVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFIN 534 (554)
Q Consensus 474 m~~-----~d~~----G~~~~-~~g~~---------~p~t~HT~~~VPfIi~gp~~~~~~~~~~~~~~g~L~DIAPTIL~ 534 (554)
+.- .+.. |..-. ..+.. ......-+.+||+||++|-.+.|....+ .-.-.-|.-+|-+
T Consensus 346 V~PP~~p~~~~~~~~~g~~t~~~~~e~~~~~~~~~~~~~p~GlG~RVP~iVISPwsrgG~V~s~---~~DHtSvLrflE~ 422 (690)
T TIGR03396 346 VPPPVPPSYNADGTSAGKSTLDTAGEYFDVPDPAEARGRPIGLGPRVPMYVISPWSKGGWVNSQ---VFDHTSVLRFLEK 422 (690)
T ss_pred cCCCCCCCcccccccccccccCCCccccccccccccccCcCCccceeeEEEECCCCCCCcccCc---cccHHHHHHHHHH
Confidence 100 0000 00000 00000 0000122558999999997655432211 1122467778888
Q ss_pred HhCCCCCC
Q 008773 535 LHGYEAPS 542 (554)
Q Consensus 535 llGi~~P~ 542 (554)
.+|++.|.
T Consensus 423 ~fgl~~~n 430 (690)
T TIGR03396 423 RFGVREPN 430 (690)
T ss_pred HhCCCCcc
Confidence 88988763
No 64
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=62.54 E-value=26 Score=35.29 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=51.5
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCC--C---chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCC
Q 008773 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLD--G---SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYEN 212 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p--~---s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~ 212 (554)
-.+.+..+.+.+++.|+ +|.+|+-...-=..| . .+++++++..+.++.+ |.. .|..-.|++. ..+| ..
T Consensus 43 ~~~~~~~l~~~~~~~gl-~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~l---Ga~-~vv~h~g~~~-~~~~-e~ 115 (273)
T smart00518 43 SEETAEKFKEALKENNI-DVSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEEL---GIK-ALVFHPGSYL-KQSK-EE 115 (273)
T ss_pred CHHHHHHHHHHHHHcCC-CEEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEEcccccc-CCCH-HH
Confidence 34568888999999999 488997432221222 1 2345666666666666 664 5666678775 5556 66
Q ss_pred ChHHHHHHHHHHH
Q 008773 213 DWDVVKRGWDAQV 225 (554)
Q Consensus 213 rw~r~~~ay~~~~ 225 (554)
.|+|..++++.++
T Consensus 116 ~~~~~~~~l~~l~ 128 (273)
T smart00518 116 ALNRIIESLNEVI 128 (273)
T ss_pred HHHHHHHHHHHHH
Confidence 6777666666554
No 65
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.81 E-value=23 Score=33.28 Aligned_cols=61 Identities=23% Similarity=0.150 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEee---cCCCCCCC---chHHHHHHHHHHHHHHhcCCCCceEEEEeeccc
Q 008773 139 LDQLQLLLKGASERGAKRIRLHILT---DGRDVLDG---SSVGFVETIEKDLAELRGKGVDAQIASGGGRMY 204 (554)
Q Consensus 139 ~~hl~al~~~a~~~g~~~v~vH~~~---DGRD~~p~---s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y 204 (554)
.+++...+++|++.|++.+.+|... -..+.... -..+.+++|.+.+++. |+ +|+-=--.++
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~---gv--~i~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEY---GV--RIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHH---TS--EEEEE-SSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhh---cc--eEEEecccCc
Confidence 8999999999999999999999662 12221111 1233455555555555 65 5654334443
No 66
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=55.84 E-value=31 Score=32.22 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=35.7
Q ss_pred hHhhhhhhc-C-CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCC
Q 008773 111 GFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL 169 (554)
Q Consensus 111 ~~~~~~~~~-~-~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~ 169 (554)
.|..+.+.+ . .+.-+.+=|+|||--++-..+.....+.+++.|+ .||+|.=|.+.+
T Consensus 88 al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi---~i~~i~ig~~~~ 145 (180)
T cd01467 88 AIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKNKGV---RIYTIGVGKSGS 145 (180)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCC---EEEEEEecCCCC
Confidence 344444444 2 2355788999999766544445555677888876 578877776543
No 67
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=53.60 E-value=24 Score=35.56 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=37.2
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCC----CchHHHHHHHHHHHHHHhcCCCCceEE
Q 008773 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLD----GSSVGFVETIEKDLAELRGKGVDAQIA 197 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p----~s~~~~l~~l~~~~~~~~~~~~~~~ia 197 (554)
.++++...+++|++.|++.+.+|....|+...+ +...+.+++|.+..++. |+ +||
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~---gv--~l~ 146 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENI---GM--DLI 146 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc---CC--EEE
Confidence 578999999999999999999998766654332 12233455555544444 65 666
No 68
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=52.74 E-value=34 Score=37.66 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=43.4
Q ss_pred hCCCcEEEEeCCCCccCCCCC----------------CHHHHH-HHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCh
Q 008773 412 SRRFHQVRVNLPNSDMVGHTG----------------DIEATV-VACKAADEAVKIIIDAIEKVGGIYLVTADHGNA 471 (554)
Q Consensus 412 ~~~~dfi~vnfan~DmvGHtg----------------~~~a~~-~aIe~vD~~lgrLl~al~~~gt~iIITSDHGn~ 471 (554)
...+|++..-+..+|.+-|.- .++..+ +--+-||+.||.+++.+.-..+.++|.||||..
T Consensus 189 ~k~wD~~~~v~~gTDRv~H~~w~y~dp~H~lypg~~n~yEnvi~eyy~LvD~~IG~~~~~i~~~e~~l~vvSDHGf~ 265 (471)
T COG3379 189 PKEWDCFGFVMIGTDRVHHALWKYLDPEHPLYPGEQNKYENVIPEYYSLVDKYIGLKLEIIGFEETYLTVVSDHGFK 265 (471)
T ss_pred cccccceeEEEEehhHHhhhhhhhcCccccCCcccCchHhHHHHHHHHHHHHHHHHHHHhccccceEEEEEeccccc
Confidence 344788877777777554421 134333 346889999999999998667999999999963
No 69
>PRK13685 hypothetical protein; Provisional
Probab=49.90 E-value=53 Score=34.60 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=43.9
Q ss_pred EEEEeecCCCccccH-----HhHHHHHHHHHHcCCCeEEEEEeecCCC----------CCCCchHHHHHHHHHHHHHHhc
Q 008773 125 HLIGLLSDGGVHSRL-----DQLQLLLKGASERGAKRIRLHILTDGRD----------VLDGSSVGFVETIEKDLAELRG 189 (554)
Q Consensus 125 Hl~GL~SdggvHsh~-----~hl~al~~~a~~~g~~~v~vH~~~DGRD----------~~p~s~~~~l~~l~~~~~~~~~ 189 (554)
+++ |+|||.-++-. ......++.|++.|++ ||.+.=|.+ +.+.-....+++| ++.
T Consensus 196 ~II-LlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~---i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~i----A~~-- 265 (326)
T PRK13685 196 RIV-LMSDGKETVPTNPDNPRGAYTAARTAKDQGVP---ISTISFGTPYGSVEINGQRQPVPVDDESLKKI----AQL-- 265 (326)
T ss_pred EEE-EEcCCCCCCCCCCCCcccHHHHHHHHHHcCCe---EEEEEECCCCCCcCcCCceeeecCCHHHHHHH----HHh--
Confidence 454 99999877532 2234567888888883 555543432 2112222233333 222
Q ss_pred CCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhC
Q 008773 190 KGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLG 227 (554)
Q Consensus 190 ~~~~~~iasv~GR~y~aMDR~d~rw~r~~~ay~~~~~g 227 (554)
-.|||| -.+. =+-.+++|+.|-.-
T Consensus 266 ---------tgG~~~-~~~~----~~~L~~if~~I~~~ 289 (326)
T PRK13685 266 ---------SGGEFY-TAAS----LEELRAVYATLQQQ 289 (326)
T ss_pred ---------cCCEEE-EcCC----HHHHHHHHHHHHHH
Confidence 148999 4433 25678888887643
No 70
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=48.81 E-value=12 Score=41.08 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=25.6
Q ss_pred CCcEEEEEEeccCCCCCCCCCccccCCCCcHHHHHhh
Q 008773 15 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKS 51 (554)
Q Consensus 15 ~~~~~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~ 51 (554)
+++||+|.+||+|..- -..++...++||+.+|.++
T Consensus 12 ~~~vvvi~vDGl~~~~--l~~~~~~g~~P~L~~l~~~ 46 (408)
T TIGR02335 12 QRPTVVICVDGCDPEY--INRGIADGVAPFIAELTGF 46 (408)
T ss_pred CCCEEEEEeCCCCHHH--HHhhhhcCCCchHHHHHhc
Confidence 4679999999999531 1223444689999999886
No 71
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.89 E-value=93 Score=31.10 Aligned_cols=121 Identities=18% Similarity=0.282 Sum_probs=71.8
Q ss_pred hcccCCccccccchHHHHHHHhcCC-CcCchhHhh-hhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeE
Q 008773 81 HNALGAGRIFAQGAKLVDLALASGK-IYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRI 157 (554)
Q Consensus 81 H~~iGaGRvv~q~~~ri~~~i~~g~-~~~n~~~~~-~~~~~-~~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v 157 (554)
.+.+|||-|.- .....++++.|. |.=.|.+.. +++.+ +.+-+.+-| +|+--+ +..|.+.|++-|
T Consensus 67 ~~~vGaGTV~~--~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG------~~T~~E-----~~~A~~~Gad~v 133 (213)
T PRK06552 67 EVLIGAGTVLD--AVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLPG------CMTVTE-----IVTALEAGSEIV 133 (213)
T ss_pred CeEEeeeeCCC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEECC------cCCHHH-----HHHHHHcCCCEE
Confidence 47899999975 567789999884 445666644 55555 446666665 454433 334557888644
Q ss_pred EEEEeecCCCCCCCchHHHHHHHHHHHH----------------HHhcCCCCceEEEEeecccccccCCCCChHHHHHHH
Q 008773 158 RLHILTDGRDVLDGSSVGFVETIEKDLA----------------ELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGW 221 (554)
Q Consensus 158 ~vH~~~DGRD~~p~s~~~~l~~l~~~~~----------------~~~~~~~~~~iasv~GR~y~aMDR~d~rw~r~~~ay 221 (554)
- +|- ..+ -+.+|++.|..-+. ++-..|. ....+++-.+ .-.. .++|+.+++.-
T Consensus 134 k--lFP----a~~-~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa--~~vavgs~l~-~~~~-~~~~~~i~~~a 202 (213)
T PRK06552 134 K--LFP----GST-LGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGA--DAVGIGGELN-KLAS-QGDFDLITEKA 202 (213)
T ss_pred E--ECC----ccc-CCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCC--cEEEEchHHh-Cccc-cCCHHHHHHHH
Confidence 4 343 223 45888887764433 2211232 3444444444 4445 67898887755
Q ss_pred HHHH
Q 008773 222 DAQV 225 (554)
Q Consensus 222 ~~~~ 225 (554)
+.++
T Consensus 203 ~~~~ 206 (213)
T PRK06552 203 KKYM 206 (213)
T ss_pred HHHH
Confidence 5443
No 72
>PRK01060 endonuclease IV; Provisional
Probab=45.76 E-value=78 Score=32.01 Aligned_cols=80 Identities=13% Similarity=-0.008 Sum_probs=49.7
Q ss_pred cHHhHHHHHHHHHHcCCC--eEEEEEeecCCCCCCCc-----hHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCC
Q 008773 138 RLDQLQLLLKGASERGAK--RIRLHILTDGRDVLDGS-----SVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRY 210 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~--~v~vH~~~DGRD~~p~s-----~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~ 210 (554)
--+.+.++-+++++.|++ .+.+|+-...+-+.|.. +++++++..+..+++ |+. .|....|+++ -..+.
T Consensus 45 ~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~l---ga~-~vv~h~G~~~-~~~~~ 119 (281)
T PRK01060 45 EELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAAL---GAK-LLVFHPGSHL-GDIDE 119 (281)
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEEcCCcCC-CCCcH
Confidence 334577788889999995 37899977766666644 355666666666666 764 5666778765 33331
Q ss_pred CCChHHHHHHHH
Q 008773 211 ENDWDVVKRGWD 222 (554)
Q Consensus 211 d~rw~r~~~ay~ 222 (554)
+..|++..++.+
T Consensus 120 ~~~~~~~~e~l~ 131 (281)
T PRK01060 120 EDCLARIAESLN 131 (281)
T ss_pred HHHHHHHHHHHH
Confidence 224444444433
No 73
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=43.42 E-value=25 Score=39.32 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=24.9
Q ss_pred EEEEEEeccCCCCC-CCCC-ccccCCCCcHHHHHhh
Q 008773 18 VAVVVLDGWGEFKP-DKYN-CIHVADTPTMDSFKKS 51 (554)
Q Consensus 18 ~~L~ilDG~G~~~~-~~~N-ai~~A~tp~~d~l~~~ 51 (554)
||||+.|-++...- .-|| . .+.|||||+|.++
T Consensus 5 IllI~~Dd~r~d~lg~~G~~~--~~~TPnLD~LA~e 38 (500)
T TIGR03417 5 ILILMADQLNGTLLPDYGPAR--WLHAPNLKRLAAR 38 (500)
T ss_pred EEEEEeCCCCccccccCCCCC--cCCCCcHHHHHHh
Confidence 99999999997643 2355 3 3689999999876
No 74
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.46 E-value=1.2e+02 Score=31.16 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=33.4
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE-eecCCCCCCCchHHHHHHHHHHHHHH
Q 008773 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI-LTDGRDVLDGSSVGFVETIEKDLAEL 187 (554)
Q Consensus 123 ~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~-~~DGRD~~p~s~~~~l~~l~~~~~~~ 187 (554)
.+|++-=+|| ++.+...++.|+++|. +|.+.. ++|+ +..-.+|+.++-+.+.+.
T Consensus 107 ~iri~~~~~~------~~~~~~~i~~ak~~G~-~v~~~i~~~~~----~~~~~~~~~~~~~~~~~~ 161 (275)
T cd07937 107 IFRIFDALND------VRNLEVAIKAVKKAGK-HVEGAICYTGS----PVHTLEYYVKLAKELEDM 161 (275)
T ss_pred EEEEeecCCh------HHHHHHHHHHHHHCCC-eEEEEEEecCC----CCCCHHHHHHHHHHHHHc
Confidence 5677665565 7888888888888886 455543 2444 333445555555555554
No 75
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=41.53 E-value=92 Score=31.93 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=25.9
Q ss_pred EEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecC
Q 008773 126 LIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 165 (554)
Q Consensus 126 l~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DG 165 (554)
.+=|+|||.-++...-+..+++.|++.++ .||+|.=|
T Consensus 167 ~iIllTDG~~~~~~~~~~~~~~~~~~~~v---~vy~I~~~ 203 (296)
T TIGR03436 167 ALIVISDGGDNRSRDTLERAIDAAQRADV---AIYSIDAR 203 (296)
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCC---EEEEeccC
Confidence 46788888777776677777777777654 46666554
No 76
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=41.23 E-value=1.1e+02 Score=31.35 Aligned_cols=124 Identities=21% Similarity=0.254 Sum_probs=76.5
Q ss_pred ccccccCCCCCCCCCcchhhhcccCC-cc---ccc--cchHHHHHHHhcC-------CCcCchhHhhhhhhcCCCceEEE
Q 008773 61 AHGSAVGLPTEDDMGNSEVGHNALGA-GR---IFA--QGAKLVDLALASG-------KIYQDEGFNYIKPSFETGTLHLI 127 (554)
Q Consensus 61 asg~~VGLp~~gqmGNSEVGH~~iGa-GR---vv~--q~~~ri~~~i~~g-------~~~~n~~~~~~~~~~~~~~lHl~ 127 (554)
+.|++|=|- .+=+||-|+.-..++. |. +++ +....+++-+.+. -+..+..++++++.+++|. ++
T Consensus 118 ~~g~gvIl~-t~H~GnwE~~~~~l~~~~~~~~~i~~~~~n~~~~~~~~~~R~~~g~~~i~~~~~~~~~~~~Lk~g~--~v 194 (295)
T PF03279_consen 118 AEGRGVILL-TGHFGNWELAGRALARRGPPVAVIYRPQKNPYIDRLLNKLRERFGIELIPKGEGIRELIRALKEGG--IV 194 (295)
T ss_pred hcCCCCEEe-CcCcChHHHHHHHHHhhCCceEEEecCCccHhHHHHHHHHHHhcCCeEecchhhHHHHHHHhccCC--EE
Confidence 467777776 7889999986555432 21 122 2234555544322 2334444677777774444 99
Q ss_pred EeecCCCcccc-----------HHhHHHHHHHHHHcCCCeEEEEEeecCCC------------CCCC-----chHHHHHH
Q 008773 128 GLLSDGGVHSR-----------LDQLQLLLKGASERGAKRIRLHILTDGRD------------VLDG-----SSVGFVET 179 (554)
Q Consensus 128 GL~SdggvHsh-----------~~hl~al~~~a~~~g~~~v~vH~~~DGRD------------~~p~-----s~~~~l~~ 179 (554)
++++|...... ..-......+|.+.|++=|.+++.-++.- .++. ....|.+.
T Consensus 195 ~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 274 (295)
T PF03279_consen 195 GLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFAYREPDGSHYRIEIEPPLDFPSSEDIEELTQRYNDR 274 (295)
T ss_pred EEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEEEEeCCCCEEEEEEeecccCCccchHHHHHHHHHHH
Confidence 99999765443 22345778899999998888888776554 1222 34556666
Q ss_pred HHHHHHHH
Q 008773 180 IEKDLAEL 187 (554)
Q Consensus 180 l~~~~~~~ 187 (554)
||+.+.+.
T Consensus 275 lE~~Ir~~ 282 (295)
T PF03279_consen 275 LEEWIREH 282 (295)
T ss_pred HHHHHHcC
Confidence 77777665
No 77
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=41.07 E-value=29 Score=36.78 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=27.6
Q ss_pred eecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCC
Q 008773 129 LLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 167 (554)
Q Consensus 129 L~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD 167 (554)
|+|=||+|| +|+++..-.|++.|++-|. ++++.-
T Consensus 67 lvT~GgiQS--Nh~r~tAavA~~lGl~~v~---ile~~~ 100 (323)
T COG2515 67 LVTYGGIQS--NHVRQTAAVAAKLGLKCVL---ILENIE 100 (323)
T ss_pred EEEecccch--hHHHHHHHHHHhcCCcEEE---EEeccc
Confidence 689999988 6999999999999998764 444443
No 78
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=40.23 E-value=1e+02 Score=28.18 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=25.7
Q ss_pred eEEEEeecCCCccccH---HhHHHHHHHHHHcCCCeEEEEEeecCC
Q 008773 124 LHLIGLLSDGGVHSRL---DQLQLLLKGASERGAKRIRLHILTDGR 166 (554)
Q Consensus 124 lHl~GL~SdggvHsh~---~hl~al~~~a~~~g~~~v~vH~~~DGR 166 (554)
-+++ |+|||...+.. +.+..+++.+++.| |.||+|.=|.
T Consensus 98 ~~iv-l~TDG~~~~~~~~~~~~~~~~~~~~~~~---v~i~~i~~g~ 139 (170)
T cd01465 98 NRIL-LATDGDFNVGETDPDELARLVAQKRESG---ITLSTLGFGD 139 (170)
T ss_pred eEEE-EEeCCCCCCCCCCHHHHHHHHHHhhcCC---eEEEEEEeCC
Confidence 5566 99999876543 44555555555555 5688888883
No 79
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=38.93 E-value=67 Score=29.30 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=69.9
Q ss_pred EEEEEeccCCCCCCCCCccccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCccccccchHHHH
Q 008773 19 AVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVD 98 (554)
Q Consensus 19 ~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~iGaGRvv~q~~~ri~ 98 (554)
|.+++|-=|-..... ..++.|=.-.++.|-..- .+..+.-.....-+. .+.+=.++ +.+...-
T Consensus 3 vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d--~fnii~f~~~~~~~~-~~~~~~~~-------------~~~~~a~ 65 (155)
T PF13768_consen 3 VVILVDTSGSMSGEK-ELVKDALRAILRSLPPGD--RFNIIAFGSSVRPLF-PGLVPATE-------------ENRQEAL 65 (155)
T ss_pred EEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCC--EEEEEEeCCEeeEcc-hhHHHHhH-------------HHHHHHH
Confidence 455677766554444 555555444555554433 224444444434443 33221111 1122233
Q ss_pred HHHhc-----CCCcCchhHhhhhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCc
Q 008773 99 LALAS-----GKIYQDEGFNYIKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGS 172 (554)
Q Consensus 99 ~~i~~-----g~~~~n~~~~~~~~~~-~~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s 172 (554)
+.|++ |.=.=.++|+.+++.. ..+....+=|+|||..-+-.+.+...++ +.. .++.||+|.=|.++.+
T Consensus 66 ~~I~~~~~~~G~t~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v~---~~~-~~~~i~~~~~g~~~~~-- 139 (155)
T PF13768_consen 66 QWIKSLEANSGGTDLLAALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLVR---RAR-GHIRIFTFGIGSDADA-- 139 (155)
T ss_pred HHHHHhcccCCCccHHHHHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHHH---hcC-CCceEEEEEECChhHH--
Confidence 33332 2222223444444433 2357888889999995334445554444 332 5688999988886664
Q ss_pred hHHHHHHH
Q 008773 173 SVGFVETI 180 (554)
Q Consensus 173 ~~~~l~~l 180 (554)
.+|++|
T Consensus 140 --~~L~~L 145 (155)
T PF13768_consen 140 --DFLREL 145 (155)
T ss_pred --HHHHHH
Confidence 566655
No 80
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=38.88 E-value=43 Score=34.43 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cEEEEecCC
Q 008773 414 RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG-GIYLVTADH 468 (554)
Q Consensus 414 ~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~g-t~iIITSDH 468 (554)
++.++.+++......+ +...++++.-|..|++++..+...+ +++|+||+.
T Consensus 127 ~~~vi~V~l~~l~~~~-----~~R~~~L~~nD~~l~~vl~~l~s~~~ytvIyts~~ 177 (282)
T PF05827_consen 127 KPRVIRVDLPPLPSSS-----ESRKEALSDNDEFLRKVLSKLPSPDPYTVIYTSTP 177 (282)
T ss_pred CCcEEEEECCCCCCcc-----ccchhhhhhhhHHHHHHHHhcCCCCcEEEEEEccC
Confidence 4678888886553322 4455679999999999999999888 999999987
No 81
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=38.58 E-value=1.7e+02 Score=26.17 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=41.9
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeec
Q 008773 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGR 202 (554)
Q Consensus 123 ~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR 202 (554)
.--.+=|+|||.-. .-....++.+++.| |.||+|.=|.+..+ ...+++| .+. ..|+
T Consensus 99 ~~~~iv~iTDG~~~---~~~~~~~~~~~~~~---i~i~~v~~~~~~~~---~~~l~~l----a~~-----------tgG~ 154 (172)
T PF13519_consen 99 RRRAIVLITDGEDN---SSDIEAAKALKQQG---ITIYTVGIGSDSDA---NEFLQRL----AEA-----------TGGR 154 (172)
T ss_dssp EEEEEEEEES-TTH---CHHHHHHHHHHCTT---EEEEEEEES-TT-E---HHHHHHH----HHH-----------TEEE
T ss_pred CceEEEEecCCCCC---cchhHHHHHHHHcC---CeEEEEEECCCccH---HHHHHHH----HHh-----------cCCE
Confidence 55666789999766 22224677777665 56899988888777 2333333 222 1588
Q ss_pred ccccccCCCCChHHHHHHHHHH
Q 008773 203 MYVTMDRYENDWDVVKRGWDAQ 224 (554)
Q Consensus 203 ~y~aMDR~d~rw~r~~~ay~~~ 224 (554)
|| .-+ +.=+.+..+++.|
T Consensus 155 ~~-~~~---~~~~~l~~~~~~I 172 (172)
T PF13519_consen 155 YF-HVD---NDPEDLDDAFQQI 172 (172)
T ss_dssp EE-EE----SSSHHHHHHHHH-
T ss_pred EE-Eec---CCHHHHHHHHhcC
Confidence 98 332 1227777777654
No 82
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=38.14 E-value=1.4e+02 Score=29.97 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=30.1
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE
Q 008773 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI 161 (554)
Q Consensus 123 ~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~ 161 (554)
++--++++|| +|.....+.++++.++++++. .+||+
T Consensus 3 ~~~kIl~iSD--iHgn~~~le~l~~~~~~~~~D-~vv~~ 38 (224)
T cd07388 3 TVRYVLATSN--PKGDLEALEKLVGLAPETGAD-AIVLI 38 (224)
T ss_pred ceeEEEEEEe--cCCCHHHHHHHHHHHhhcCCC-EEEEC
Confidence 4556889999 899999999999999999885 55665
No 83
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.49 E-value=70 Score=32.30 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=75.7
Q ss_pred hhcccCCccccccchHHHHHHHhcC-CCcCchhHhh-hhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCe
Q 008773 80 GHNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKR 156 (554)
Q Consensus 80 GH~~iGaGRvv~q~~~ri~~~i~~g-~~~~n~~~~~-~~~~~-~~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~ 156 (554)
.++.+|||-|+- ......+++.| +|.=.|.+.. +++.+ +.+.+.+-|-+|..- +..|.+.|++-
T Consensus 69 p~~~vGaGTVl~--~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsE-----------i~~A~~~Ga~~ 135 (222)
T PRK07114 69 PGMILGVGSIVD--AATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSE-----------IGYAEELGCEI 135 (222)
T ss_pred CCeEEeeEeCcC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHH-----------HHHHHHCCCCE
Confidence 358999999976 56678899988 5556666654 66666 557999999999863 34678889863
Q ss_pred EEEEEeecCCCCCCCchHHHHHHHH------------------HHHHHHhcCCCCceEEEEeecccc---cccCCCCChH
Q 008773 157 IRLHILTDGRDVLDGSSVGFVETIE------------------KDLAELRGKGVDAQIASGGGRMYV---TMDRYENDWD 215 (554)
Q Consensus 157 v~vH~~~DGRD~~p~s~~~~l~~l~------------------~~~~~~~~~~~~~~iasv~GR~y~---aMDR~d~rw~ 215 (554)
|=+|==+ .-+..|++.|. +-+.+.-+.| -+|-+.|..-+ .++ .++|+
T Consensus 136 --vKlFPA~-----~~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG---a~avg~Gs~L~~~~~~~--~~~~~ 203 (222)
T PRK07114 136 --VKLFPGS-----VYGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG---VTCVGMGSKLIPKEALA--AKDYA 203 (222)
T ss_pred --EEECccc-----ccCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC---CEEEEEChhhcCccccc--cccHH
Confidence 4555311 23577886665 2222222112 46666677641 122 46888
Q ss_pred HHHHHHHHH
Q 008773 216 VVKRGWDAQ 224 (554)
Q Consensus 216 r~~~ay~~~ 224 (554)
.+++..+..
T Consensus 204 ~i~~~a~~~ 212 (222)
T PRK07114 204 GIEQKVREA 212 (222)
T ss_pred HHHHHHHHH
Confidence 777654433
No 84
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.28 E-value=1.9e+02 Score=29.22 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=59.1
Q ss_pred ccccccCCCCCCCCCcchhhhcccCCccccccchHHHHHHHhcCCCcCchhHhhhhhhcCCCceEEEEeecCCCccccHH
Q 008773 61 AHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLD 140 (554)
Q Consensus 61 asg~~VGLp~~gqmGNSEVGH~~iGaGRvv~q~~~ri~~~i~~g~~~~n~~~~~~~~~~~~~~lHl~GL~SdggvHsh~~ 140 (554)
|...-+|+| .... .+=|-++.+.. .+++++|. -+.+.++.+.. +-.+|+|+-+|+ .++..+
T Consensus 31 ad~iElgip-~sdp---------~adG~~i~~~~---~~a~~~g~---~~~v~~vr~~~-~~Pl~lM~y~n~--~~~~~~ 91 (244)
T PRK13125 31 VDILELGIP-PKYP---------KYDGPVIRKSH---RKVKGLDI---WPLLEEVRKDV-SVPIILMTYLED--YVDSLD 91 (244)
T ss_pred CCEEEECCC-CCCC---------CCCCHHHHHHH---HHHHHcCc---HHHHHHHhccC-CCCEEEEEecch--hhhCHH
Confidence 677778998 4432 12244444443 66677777 12222232222 236899999999 355444
Q ss_pred hHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 008773 141 QLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (554)
Q Consensus 141 hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~ 187 (554)
..++.+++.|+.-|.||. .++.+ .+.++++.+.++++
T Consensus 92 ---~~i~~~~~~Gadgvii~d------lp~e~-~~~~~~~~~~~~~~ 128 (244)
T PRK13125 92 ---NFLNMARDVGADGVLFPD------LLIDY-PDDLEKYVEIIKNK 128 (244)
T ss_pred ---HHHHHHHHcCCCEEEECC------CCCCc-HHHHHHHHHHHHHc
Confidence 457788899999899983 33332 34566676667766
No 85
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=34.65 E-value=1.7e+02 Score=28.99 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=42.6
Q ss_pred ceEEEEeecCCCcccc-------HHhHHHHHHHHHHcCCCeEEEEEeecCCCCC---CC----chHHHHHHHHHHHHHH
Q 008773 123 TLHLIGLLSDGGVHSR-------LDQLQLLLKGASERGAKRIRLHILTDGRDVL---DG----SSVGFVETIEKDLAEL 187 (554)
Q Consensus 123 ~lHl~GL~SdggvHsh-------~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~---p~----s~~~~l~~l~~~~~~~ 187 (554)
.+-.++-+|+.-.+.. +++++..+++|++.|++.|.+|.-....... |. ...++++++.+..++.
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~ 138 (274)
T COG1082 60 EITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL 138 (274)
T ss_pred EEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 5555566666434443 7888889999999999878778765444433 32 3466777776666655
No 86
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=33.93 E-value=31 Score=33.60 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=51.3
Q ss_pred ccHHhHHHHHHHHHHcCCCeEEEEE-eecCCCCCCCchHHHHHHHH-------------HHHHHHhcCCCCceEEEEeec
Q 008773 137 SRLDQLQLLLKGASERGAKRIRLHI-LTDGRDVLDGSSVGFVETIE-------------KDLAELRGKGVDAQIASGGGR 202 (554)
Q Consensus 137 sh~~hl~al~~~a~~~g~~~v~vH~-~~DGRD~~p~s~~~~l~~l~-------------~~~~~~~~~~~~~~iasv~GR 202 (554)
+|+..|..+++.++++| +.||||. +..|=-.. +.|.+||.+.- ...++. | +- ..=|
T Consensus 28 g~I~~l~~~v~~~~~~g-K~vfVHiDli~Gl~~D-~~~i~~L~~~~~~dGIISTk~~~i~~Ak~~---g----l~-tIqR 97 (175)
T PF04309_consen 28 GDIGNLKDIVKRLKAAG-KKVFVHIDLIEGLSRD-EAGIEYLKEYGKPDGIISTKSNLIKRAKKL---G----LL-TIQR 97 (175)
T ss_dssp EECCCHHHHHHHHHHTT--EEEEECCGEETB-SS-HHHHHHHHHTT--SEEEESSHHHHHHHHHT---T-----E-EEEE
T ss_pred CcHHHHHHHHHHHHHcC-CEEEEEehhcCCCCCC-HHHHHHHHHcCCCcEEEeCCHHHHHHHHHc---C----CE-EEEE
Confidence 59999999999999999 4899997 44443333 89999998753 222222 2 22 3469
Q ss_pred ccccccCCCCChHHHHHHHHHHHhC
Q 008773 203 MYVTMDRYENDWDVVKRGWDAQVLG 227 (554)
Q Consensus 203 ~y~aMDR~d~rw~r~~~ay~~~~~g 227 (554)
.| .+|. .-++.+.+.+-..
T Consensus 98 iF-liDS-----~al~~~~~~i~~~ 116 (175)
T PF04309_consen 98 IF-LIDS-----SALETGIKQIEQS 116 (175)
T ss_dssp EE--SSH-----HHHHHHHHHHHHH
T ss_pred ee-eecH-----HHHHHHHHHHhhc
Confidence 99 9999 7777777766543
No 87
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=33.73 E-value=39 Score=36.71 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=33.3
Q ss_pred CcEEEEEEeccCCCCCCCCCccccCCCCcHHHHHhhCCC
Q 008773 16 NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPG 54 (554)
Q Consensus 16 ~~~~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~~p~ 54 (554)
+.|.|++||.+|++...+...+..+..-++-++++.+++
T Consensus 2 ~Rv~liVlDSfGIGa~pDa~~fgd~ganTlgHi~e~~~~ 40 (397)
T COG1015 2 KRVFLIVLDSFGIGAAPDAEKFGDVGANTLGHIAEACAG 40 (397)
T ss_pred ceEEEEEecCcccCCCccHHHhCCCCchhHHHHHHHcCc
Confidence 359999999999998888888887888888888888874
No 88
>PRK12383 putative mutase; Provisional
Probab=33.58 E-value=38 Score=37.25 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=72.7
Q ss_pred CcEEEEEEeccCCCCCCCCCcc--ccCCCCcHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCccccccc
Q 008773 16 NIVAVVVLDGWGEFKPDKYNCI--HVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQG 93 (554)
Q Consensus 16 ~~~~L~ilDG~G~~~~~~~Nai--~~A~tp~~d~l~~~~p~~~~~l~asg~~VGLp~~gqmGNSEVGH~~iGaGRvv~q~ 93 (554)
++++||||||+|++.....+.+ .....-++-++.+.+|. .=||.=. -||.|+|..
T Consensus 2 ~R~~~iVlDs~GiG~~~Da~~~~~~D~ganTl~hi~~~~~~-----------l~lP~l~----------~lGl~~~~~-- 58 (406)
T PRK12383 2 ARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPH-----------LQLPTLE----------KLGLINALG-- 58 (406)
T ss_pred CeEEEEEecCCCCCCCCCHHHhCCCCCCcchHHHHHHhcCC-----------CCCCChH----------HcChhhccc--
Confidence 3599999999999998888888 66666778888776543 3456111 234444420
Q ss_pred hHHHHHHHhcCCCcCchh--Hhhhhhhc--C---CCceEEEEe----ecCCCccccHHhHHHHHHHHHHcCCCeEEEEEe
Q 008773 94 AKLVDLALASGKIYQDEG--FNYIKPSF--E---TGTLHLIGL----LSDGGVHSRLDQLQLLLKGASERGAKRIRLHIL 162 (554)
Q Consensus 94 ~~ri~~~i~~g~~~~n~~--~~~~~~~~--~---~~~lHl~GL----~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~ 162 (554)
++......+|. +-++.+.. + .|--=+||+ ...-=-. +++.++.+.+.++|.+ | --.
T Consensus 59 -------~~~~~~~~~p~~~~g~~~~~s~GkDt~~GHwE~~G~~~~~~~~~p~~---~~i~~~~~~~~~~g~~-v--~~~ 125 (406)
T PRK12383 59 -------YAPGDMQPSPSATWGVAELQHEGADTFMGHQEIMGTRPLPPLRMPFS---DVIDRVEQALESAGYQ-V--ERR 125 (406)
T ss_pred -------ccCCCCCCCcceeeeeHhhhCCCCCCCcchHHHcCCCCCCccCCChH---HHHHHHHHHhhhcccc-c--ccc
Confidence 11111111111 11111111 1 122336777 2222111 7788888888888863 3 445
Q ss_pred ecCCCCC-----CCchHHHHHHH
Q 008773 163 TDGRDVL-----DGSSVGFVETI 180 (554)
Q Consensus 163 ~DGRD~~-----p~s~~~~l~~l 180 (554)
++||-+- |.|+-+-++++
T Consensus 126 ~~g~~~l~v~n~~~sgt~i~~d~ 148 (406)
T PRK12383 126 GDGLQFLLVNQAVAIGDNLEADL 148 (406)
T ss_pred CCCCeEEeECCCccchhHHHHhh
Confidence 5788765 88887776655
No 89
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=31.63 E-value=1e+02 Score=26.89 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred hhHhhhhhhc-C---CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCC
Q 008773 110 EGFNYIKPSF-E---TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGR 166 (554)
Q Consensus 110 ~~~~~~~~~~-~---~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGR 166 (554)
.++..+.+.+ . ....+++=++|||..++..+-+...++.+++.+++ ||++.=|-
T Consensus 84 ~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~---v~~v~~g~ 141 (161)
T cd00198 84 AALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGIT---VYTIGIGD 141 (161)
T ss_pred HHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCE---EEEEEcCC
Confidence 3444444444 2 24789999999999998887888899999998764 55554443
No 90
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=31.42 E-value=1e+02 Score=29.36 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=41.2
Q ss_pred ccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 008773 137 SRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (554)
Q Consensus 137 sh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~ 187 (554)
-++..|..++|++.+.-.+.++||++|=--+..|..-...+++|.+.|.+.
T Consensus 33 hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~ 83 (148)
T cd02685 33 HQIRNFLRFCELVVKPPCELKYIHLVTGEDEDNGKQQIEALEEIKQSLASH 83 (148)
T ss_pred HHHHHHHHHHHHHhcCccceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhC
Confidence 378899999999998666689999999443355677788899999888876
No 91
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.91 E-value=81 Score=31.93 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=21.5
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEee
Q 008773 138 RLDQLQLLLKGASERGAKRIRLHILT 163 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~~v~vH~~~ 163 (554)
+++++...+++|++.|++.|.+|.-.
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~ 108 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGS 108 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 57889999999999999888777654
No 92
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=29.80 E-value=2.8e+02 Score=25.70 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEe
Q 008773 400 LEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVT 465 (554)
Q Consensus 400 ~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIIT 465 (554)
....+.+.+.+...+||.+++.+..=|..... ..+ ++=+.+..+++.+++.+..+|+.
T Consensus 45 ~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~-~~~-------~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 45 SQMLVRFYEDVIALKPAVVIIMGGTNDIIVNT-SLE-------MIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCccccCC-CHH-------HHHHHHHHHHHHHHHCCCcEEEE
Confidence 34445554555567899999999766654322 222 23345667777777777544444
No 93
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.63 E-value=1.1e+02 Score=30.91 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.6
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEee
Q 008773 138 RLDQLQLLLKGASERGAKRIRLHILT 163 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~~v~vH~~~ 163 (554)
.++.+...++.|++.|++.|.+|...
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~~~~~ 122 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQLAGYD 122 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 46788899999999999988877554
No 94
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.42 E-value=68 Score=32.98 Aligned_cols=75 Identities=29% Similarity=0.273 Sum_probs=47.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHhcC-cEEEEecCC
Q 008773 394 QPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVV----ACKAADEAVKIIIDAIEKVG-GIYLVTADH 468 (554)
Q Consensus 394 ~Pemsa~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~----aIe~vD~~lgrLl~al~~~g-t~iIITSDH 468 (554)
.+.|...++.+.+...+++-+|||+++--.|+-.-|.+.-.+.... +|---|.--.+.-++++++| +.||+.+|-
T Consensus 40 GaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~Dp 119 (277)
T PRK00994 40 GAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADP 119 (277)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEecCc
Confidence 3557776676666666677889999998788766665543332221 11122443344558888887 688888874
No 95
>PTZ00445 p36-lilke protein; Provisional
Probab=28.95 E-value=83 Score=31.82 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHhcC-cEEEEe-cCC
Q 008773 398 KALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIE----ATVVACKAADEAVKIIIDAIEKVG-GIYLVT-ADH 468 (554)
Q Consensus 398 sa~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~----a~~~aIe~vD~~lgrLl~al~~~g-t~iIIT-SDH 468 (554)
+..+.++..++.|++...-+|.++|-++=..=|+|.+. ....-++.+-.++..++++|++.| .++|+| ||-
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56788999999999998999999998886667887432 224557778888999999999988 355555 443
No 96
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=28.90 E-value=1.3e+02 Score=29.31 Aligned_cols=44 Identities=5% Similarity=-0.019 Sum_probs=33.3
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCC
Q 008773 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL 169 (554)
Q Consensus 123 ~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~ 169 (554)
....+=|++||+-.++-+......+.++++|| .||++.-|.+..
T Consensus 131 v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI---~i~tVGiG~~~d 174 (193)
T cd01477 131 YKKVVIVFASDYNDEGSNDPRPIAARLKSTGI---AIITVAFTQDES 174 (193)
T ss_pred CCeEEEEEecCccCCCCCCHHHHHHHHHHCCC---EEEEEEeCCCCC
Confidence 46778899998776664556677888899987 488888887644
No 97
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=28.80 E-value=2e+02 Score=26.23 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=10.5
Q ss_pred EEEEEeecCCCCCC
Q 008773 157 IRLHILTDGRDVLD 170 (554)
Q Consensus 157 v~vH~~~DGRD~~p 170 (554)
-.|-+||||.++..
T Consensus 98 ~~ivl~TDG~~~~~ 111 (170)
T cd01465 98 NRILLATDGDFNVG 111 (170)
T ss_pred eEEEEEeCCCCCCC
Confidence 34679999998644
No 98
>PRK13759 arylsulfatase; Provisional
Probab=28.72 E-value=36 Score=37.90 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=24.1
Q ss_pred EEEEEEeccCCCCC-CCCCccccCCCCcHHHHHhh
Q 008773 18 VAVVVLDGWGEFKP-DKYNCIHVADTPTMDSFKKS 51 (554)
Q Consensus 18 ~~L~ilDG~G~~~~-~~~Nai~~A~tp~~d~l~~~ 51 (554)
||||++|-+|...- .-|| ..+.|||||+|.++
T Consensus 9 Il~I~~Ddlr~d~l~~~G~--~~~~TPnld~La~~ 41 (485)
T PRK13759 9 IILIMVDQMRGDCLGCNGN--KAVETPNLDMLASE 41 (485)
T ss_pred EEEEEECCCCHHHHHhcCC--CcCCCccHHHHHhc
Confidence 99999999986422 2344 34689999999876
No 99
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.50 E-value=1.4e+02 Score=29.77 Aligned_cols=117 Identities=19% Similarity=0.348 Sum_probs=72.5
Q ss_pred hcccCCccccccchHHHHHHHhcC-CCcCchhHhh-hhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeE
Q 008773 81 HNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRI 157 (554)
Q Consensus 81 H~~iGaGRvv~q~~~ri~~~i~~g-~~~~n~~~~~-~~~~~-~~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v 157 (554)
++.+|||-|.- .....++++.| +|.=.|.+.. +++.+ +.+-..+-|.++..- +..|.+.|.+-
T Consensus 59 ~~~vGAGTVl~--~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~TptE-----------i~~A~~~Ga~~- 124 (204)
T TIGR01182 59 DALIGAGTVLN--PEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPIIPGVATPSE-----------IMLALELGITA- 124 (204)
T ss_pred CCEEEEEeCCC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEECCCCCHHH-----------HHHHHHCCCCE-
Confidence 58999999975 56688899988 4555666544 56666 557889999888763 33677888863
Q ss_pred EEEEeecCCCCCCCc---hHHHHHHHHHHH----------------HHHhcCCCCceEEEEeeccccc--ccCCCCChHH
Q 008773 158 RLHILTDGRDVLDGS---SVGFVETIEKDL----------------AELRGKGVDAQIASGGGRMYVT--MDRYENDWDV 216 (554)
Q Consensus 158 ~vH~~~DGRD~~p~s---~~~~l~~l~~~~----------------~~~~~~~~~~~iasv~GR~y~a--MDR~d~rw~r 216 (554)
|=+| |-+ +..|++.|..-+ .+.-+.| -++-+.|..-+- .=. .++|+.
T Consensus 125 -vKlF-------PA~~~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG---a~~vg~Gs~L~~~~~~~-~~~~~~ 192 (204)
T TIGR01182 125 -LKLF-------PAEVSGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAP---NVACGGGSWLVPKDLIA-AGDWDE 192 (204)
T ss_pred -EEEC-------CchhcCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC---CEEEEEChhhcCchhhc-cccHHH
Confidence 4444 322 478887665322 2221112 467677776411 112 468887
Q ss_pred HHHHHHH
Q 008773 217 VKRGWDA 223 (554)
Q Consensus 217 ~~~ay~~ 223 (554)
+++.-+.
T Consensus 193 i~~~a~~ 199 (204)
T TIGR01182 193 ITRLARE 199 (204)
T ss_pred HHHHHHH
Confidence 7764443
No 100
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=27.94 E-value=63 Score=31.58 Aligned_cols=72 Identities=19% Similarity=0.401 Sum_probs=51.3
Q ss_pred ccHHhHHHHHHHHHHcCCCeEEEEE-eecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEE--------------Eee
Q 008773 137 SRLDQLQLLLKGASERGAKRIRLHI-LTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIAS--------------GGG 201 (554)
Q Consensus 137 sh~~hl~al~~~a~~~g~~~v~vH~-~~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~~~~ias--------------v~G 201 (554)
||+=+|+.+++.++++|- .||||+ +.+|-- .-.-|..|+.+.-+ ..|-|.| ..=
T Consensus 32 ~~i~~ik~ivk~lK~~gK-~vfiHvDLv~Gl~-~~e~~i~fi~~~~~---------pdGIISTk~~~i~~Akk~~~~aIq 100 (181)
T COG1954 32 GHILNIKEIVKKLKNRGK-TVFIHVDLVEGLS-NDEVAIEFIKEVIK---------PDGIISTKSNVIKKAKKLGILAIQ 100 (181)
T ss_pred chhhhHHHHHHHHHhCCc-EEEEEeHHhcccC-CchHHHHHHHHhcc---------CCeeEEccHHHHHHHHHcCCceee
Confidence 699999999999999984 899998 556665 44567777775431 1112222 357
Q ss_pred cccccccCCCCChHHHHHHHHHHH
Q 008773 202 RMYVTMDRYENDWDVVKRGWDAQV 225 (554)
Q Consensus 202 R~y~aMDR~d~rw~r~~~ay~~~~ 225 (554)
|.| ..|+ -..+++++.+-
T Consensus 101 R~F-ilDS-----~Al~~~~~~i~ 118 (181)
T COG1954 101 RLF-ILDS-----IALEKGIKQIE 118 (181)
T ss_pred eee-eecH-----HHHHHHHHHHH
Confidence 999 9998 77777777665
No 101
>PRK13753 dihydropteroate synthase; Provisional
Probab=27.75 E-value=3.1e+02 Score=28.76 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=43.9
Q ss_pred eEEEEee-------cCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 008773 124 LHLIGLL-------SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELR 188 (554)
Q Consensus 124 lHl~GL~-------SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~~ 188 (554)
.|+||.| ||||.+...|...+=++...+.|..=|=|=+=+..-...|-|..+=++.+...++.+.
T Consensus 2 ~~iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~ 73 (279)
T PRK13753 2 VTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALS 73 (279)
T ss_pred ceEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5899987 9999998888888878888888985333322222223345556666776666667664
No 102
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=26.04 E-value=64 Score=35.24 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=30.8
Q ss_pred cEEEEEEeccCCCCCCCCCccccCCCCcHHHHHhhCC
Q 008773 17 IVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAP 53 (554)
Q Consensus 17 ~~~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~~p 53 (554)
+++|||||++|++.....+.+-....-++-++.+.++
T Consensus 1 R~~~iVlDs~GiG~~pDa~~~~D~ganTl~hi~~~~~ 37 (381)
T TIGR01696 1 RVFLIVMDSVGIGEAPDAADFGDEGAHTLGHIAEACA 37 (381)
T ss_pred CEEEEEecCCcCCCCCCHHHhCCCCccHHHHHHHhcC
Confidence 3899999999999988888888877778888877543
No 103
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.00 E-value=2.8e+02 Score=25.34 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHc-CCCeEEEEEeecCCCCC
Q 008773 141 QLQLLLKGASER-GAKRIRLHILTDGRDVL 169 (554)
Q Consensus 141 hl~al~~~a~~~-g~~~v~vH~~~DGRD~~ 169 (554)
++..+++.+.++ || .||.+.+|.|+.
T Consensus 86 d~~~~~~~l~~~~gv---~l~~~~~~~d~~ 112 (140)
T cd03770 86 KVGLYMEILFPKKGV---RFIAINDGVDSA 112 (140)
T ss_pred HHHHHHHHHHhhcCc---EEEEecCCcCCC
Confidence 344455555554 54 466666666654
No 104
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.93 E-value=1.8e+02 Score=25.27 Aligned_cols=76 Identities=18% Similarity=0.358 Sum_probs=52.8
Q ss_pred EEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEee--------cCCC---CCCCchHHHHHHHHHHHHHHhcCCCC
Q 008773 125 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILT--------DGRD---VLDGSSVGFVETIEKDLAELRGKGVD 193 (554)
Q Consensus 125 Hl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~--------DGRD---~~p~s~~~~l~~l~~~~~~~~~~~~~ 193 (554)
+++ |+--+|+=|++ =+..+-+.|+++|++ +-|.+.. +.-| +.|+-+- .++++++.+.+. |+
T Consensus 5 ~IL-l~C~~G~sSS~-l~~k~~~~~~~~gi~-~~v~a~~~~~~~~~~~~~Dvill~pqi~~-~~~~i~~~~~~~---~i- 76 (95)
T TIGR00853 5 NIL-LLCAAGMSTSL-LVNKMNKAAEEYGVP-VKIAAGSYGAAGEKLDDADVVLLAPQVAY-MLPDLKKETDKK---GI- 76 (95)
T ss_pred EEE-EECCCchhHHH-HHHHHHHHHHHCCCc-EEEEEecHHHHHhhcCCCCEEEECchHHH-HHHHHHHHhhhc---CC-
Confidence 445 45556677777 557888999999994 6666654 2223 2455443 677787776665 65
Q ss_pred ceEEEEeecccccccC
Q 008773 194 AQIASGGGRMYVTMDR 209 (554)
Q Consensus 194 ~~iasv~GR~y~aMDR 209 (554)
+++++-.+.|-.||-
T Consensus 77 -pv~~I~~~~Y~~mdg 91 (95)
T TIGR00853 77 -PVEVINGAQYGKLTG 91 (95)
T ss_pred -CEEEeChhhcccCCc
Confidence 899999999977875
No 105
>PRK05362 phosphopentomutase; Provisional
Probab=25.32 E-value=69 Score=35.13 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=27.7
Q ss_pred CcEEEEEEeccCCCCCCCCCccccCCCCcHHHHHhh
Q 008773 16 NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKS 51 (554)
Q Consensus 16 ~~~~L~ilDG~G~~~~~~~Nai~~A~tp~~d~l~~~ 51 (554)
++++|||||++|++.....+.+-....-++-++.+.
T Consensus 2 ~r~~~ivlDs~GiG~~~Da~~~~D~ganTl~hi~~~ 37 (394)
T PRK05362 2 KRVFLIVLDSVGIGAAPDAAKFGDEGADTLGHIAEA 37 (394)
T ss_pred CeEEEEEecCCcCCCCCCHHHhCCCCccHHHHHHHh
Confidence 359999999999998877776666666666666653
No 106
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=25.19 E-value=46 Score=31.81 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHh-cCcEEEEecCCCC
Q 008773 442 KAADEAVKIIIDAIEK-VGGIYLVTADHGN 470 (554)
Q Consensus 442 e~vD~~lgrLl~al~~-~gt~iIITSDHGn 470 (554)
+.-|..|.+++..+.. ...+.|+||||.-
T Consensus 77 ~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~i 106 (166)
T PF05991_consen 77 ETADDYIERLVRELKNRPRQVTVVTSDREI 106 (166)
T ss_pred CCHHHHHHHHHHHhccCCCeEEEEeCCHHH
Confidence 5779999999999887 3579999999974
No 107
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=24.06 E-value=2.6e+02 Score=29.64 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=39.0
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCC
Q 008773 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 192 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~ 192 (554)
-++.|+.|++.|++.||. |+=++.=|-|.. .|..+-++.|.+++.++...|+
T Consensus 54 el~~l~~L~~~a~~~~V~--Fv~aisPg~~~~-~s~~~d~~~L~~K~~ql~~lGv 105 (306)
T PF07555_consen 54 ELAELKELADAAKANGVD--FVYAISPGLDIC-YSSEEDFEALKAKFDQLYDLGV 105 (306)
T ss_dssp HHHHHHHHHHHHHHTT-E--EEEEEBGTTT---TSHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHcCCE--EEEEECcccccc-cCcHHHHHHHHHHHHHHHhcCC
Confidence 468899999999999995 566666666654 7788888999999888876666
No 108
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=23.52 E-value=3.3e+02 Score=28.56 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=44.6
Q ss_pred ceEEEEee-------cCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 008773 123 TLHLIGLL-------SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (554)
Q Consensus 123 ~lHl~GL~-------SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~ 187 (554)
+-++||.| ||||.|...|...+-++...++|..=+=|=+=+..-...|-|..+-++.+...++.+
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l 85 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAI 85 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56799997 999999999998888888889998533222111113344556667777766666665
No 109
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=23.49 E-value=3.3e+02 Score=25.37 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=39.6
Q ss_pred hhHhhhhhhc-C-CCceEEEEeecCCCcccc------HHhHHHH---HHHHHHcCCCeEEEEEeecCCCCCCCchHHHHH
Q 008773 110 EGFNYIKPSF-E-TGTLHLIGLLSDGGVHSR------LDQLQLL---LKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 178 (554)
Q Consensus 110 ~~~~~~~~~~-~-~~~lHl~GL~SdggvHsh------~~hl~al---~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~ 178 (554)
+++..+.+.+ . ...--++=|+|||--+.- +..+... ++.|++.|| .+|++.=|.|..+ .=..+++
T Consensus 88 ~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi---~v~~igig~~~~~-~~~~~~~ 163 (174)
T cd01454 88 AAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGI---EVFGITIDRDATT-VDKEYLK 163 (174)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCc---EEEEEEecCcccc-chHHHHH
Confidence 3444444444 2 223456889999988742 1123333 556677776 5888888988887 4444554
Q ss_pred HH
Q 008773 179 TI 180 (554)
Q Consensus 179 ~l 180 (554)
++
T Consensus 164 ~~ 165 (174)
T cd01454 164 NI 165 (174)
T ss_pred Hh
Confidence 43
No 110
>PRK06886 hypothetical protein; Validated
Probab=23.28 E-value=9.2e+02 Score=25.67 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=44.6
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHH
Q 008773 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVK 218 (554)
Q Consensus 139 ~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~rw~r~~ 218 (554)
.+|+..+.++|++.|+ .|-+|+- -.+.+.. ..++.+.+...+. |..|+ .+++=-. +|+- ...+...
T Consensus 161 ~e~l~~~~~lA~~~g~-~Id~Hld--e~~~~~~---~~le~l~~~~~~~---Gl~gr--V~~sH~~-~L~~--~~~~~~~ 226 (329)
T PRK06886 161 LEAMDILLDTAKSLGK-MVHVHVD--QFNTPKE---KETEQLCDKTIEH---GMQGR--VVAIHGI-SIGA--HSKEYRY 226 (329)
T ss_pred HHHHHHHHHHHHHcCC-CeEEeEC--CCCchhH---HHHHHHHHHHHHc---CCCCC--EEEEEec-cccC--cChhhHH
Confidence 5789999999999998 4666664 3333332 3455555444454 66556 3344545 6663 3334455
Q ss_pred HHHHHHHh
Q 008773 219 RGWDAQVL 226 (554)
Q Consensus 219 ~ay~~~~~ 226 (554)
+.++.|..
T Consensus 227 ~~i~~La~ 234 (329)
T PRK06886 227 RLYQKMRE 234 (329)
T ss_pred HHHHHHHH
Confidence 66666664
No 111
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=22.43 E-value=1.1e+02 Score=31.81 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=31.5
Q ss_pred eEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecC
Q 008773 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 165 (554)
Q Consensus 124 lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DG 165 (554)
-.++=|+|||.-|-|-.-...+++.|+++|+. + +=+++|.
T Consensus 165 ~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~-l-~~I~ld~ 204 (266)
T cd01460 165 WQLLLIISDGRGEFSEGAQKVRLREAREQNVF-V-VFIIIDN 204 (266)
T ss_pred ccEEEEEECCCcccCccHHHHHHHHHHHcCCe-E-EEEEEcC
Confidence 48999999999888877777779999999984 3 3345555
No 112
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.57 E-value=1.5e+02 Score=26.13 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=31.3
Q ss_pred CCCCCCccCHHHHHHHHHcCCCCCCCC------CCCEEee---cCC----CCccccccCCCEEEEe
Q 008773 227 GEAPHKFKSAVEAVKKLREQPNANDQY------LPPFVIV---DEN----GKAVGPIVDGDAVVTF 279 (554)
Q Consensus 227 g~~~~~~~~~~~~i~~~y~~~~~~Def------i~P~~~~---~~~----~~~~~~i~~~D~vif~ 279 (554)
++++.+..|.+.+|.+.|.+. -|++ |.|-+|+ +.+ ++.-..+++||.|+|.
T Consensus 32 ~e~~~tvgdll~yi~~~~ie~--r~~lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfi 95 (101)
T KOG4146|consen 32 GESPATVGDLLDYIFGKYIET--RDSLFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFI 95 (101)
T ss_pred CCCcccHHHHHHHHHHHHhcC--CcceEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEE
Confidence 344445577889999988762 2333 5665443 321 2223568999999986
No 113
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.47 E-value=2.6e+02 Score=28.24 Aligned_cols=51 Identities=22% Similarity=0.189 Sum_probs=0.0
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCc--------hHHHHHHHHHHHHHHhcCCCCceEE
Q 008773 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGS--------SVGFVETIEKDLAELRGKGVDAQIA 197 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s--------~~~~l~~l~~~~~~~~~~~~~~~ia 197 (554)
.++++...+++|++.|++.|.++ |++..+.. ..++++++.+..++. |+ +|+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~----~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~---Gv--~l~ 150 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLA----GYDVYYEEHDEETRRRFREGLKEAVELAARA---QV--TLA 150 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEec----CcccccCcCCHHHHHHHHHHHHHHHHHHHHc---CC--EEE
No 114
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=21.35 E-value=2.5e+02 Score=26.13 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=12.0
Q ss_pred EEEEeecCCCCCCCc
Q 008773 158 RLHILTDGRDVLDGS 172 (554)
Q Consensus 158 ~vH~~~DGRD~~p~s 172 (554)
.|-+|+||.++....
T Consensus 106 ~iiliTDG~~~~~~~ 120 (174)
T cd01454 106 ILLVISDGEPNDLDY 120 (174)
T ss_pred EEEEEeCCCcCcccc
Confidence 489999999986643
No 115
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.80 E-value=3.1e+02 Score=28.05 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=40.0
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCc--------hHHHHHHHHHHHHHHhcCCCCceEEEEeecc
Q 008773 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDGS--------SVGFVETIEKDLAELRGKGVDAQIASGGGRM 203 (554)
Q Consensus 139 ~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~s--------~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~ 203 (554)
.+.+..++++|.+.||+.|.|=+|+=.-=-.|+. ...++++..+.+.+. |+ +| .++|+-
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~~~~~~~~---~i--ri-~~iG~~ 110 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEW---GV--RV-RWSGRR 110 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHHHHHHHHc---Cc--EE-EEEech
Confidence 4567889999999999999999996555556766 445555544444443 55 55 355654
No 116
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=20.68 E-value=5.3e+02 Score=25.15 Aligned_cols=65 Identities=6% Similarity=0.029 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEec
Q 008773 397 MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTA 466 (554)
Q Consensus 397 msa~~vtd~ai~~I~~~~~dfi~vnfan~DmvGHtg~~~a~~~aIe~vD~~lgrLl~al~~~gt~iIITS 466 (554)
.+..++.+.+.+..++.++++|++++-..=..+.... .. -+.++..+.+|-..+++.|..+|++|
T Consensus 106 ~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~-~~----~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 106 LTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKG-NR----QQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCC-CH----HHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 3455677766666666789999998754211222111 11 24456667777777778887777777
No 117
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=20.56 E-value=2.7e+02 Score=30.40 Aligned_cols=72 Identities=24% Similarity=0.317 Sum_probs=42.5
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCC----Cch-HHHHHHHHHHHHHHhcCCCCceEEEE----eeccccccc
Q 008773 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLD----GSS-VGFVETIEKDLAELRGKGVDAQIASG----GGRMYVTMD 208 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p----~s~-~~~l~~l~~~~~~~~~~~~~~~iasv----~GR~y~aMD 208 (554)
=|+|++..+++|++.|.+.| .-.+-||.+-++ ..+ .-+++.|.+.+ +....++ +++-= --|+| ..|
T Consensus 114 AIe~~k~~idiA~eLGa~~I-~iW~~DG~~~~g~~~~~~a~~rl~esL~eI~-~~~~~~v--~~~iE~Kp~Ep~~y-~t~ 188 (378)
T TIGR02635 114 AIDHLLECVDIAKKTGSKDI-SLWLADGTNYPGQDDFRSRKDRLEESLAEVY-EHLGADM--RLLIEYKFFEPAFY-HTD 188 (378)
T ss_pred HHHHHHHHHHHHHHhCCCeE-EEecCCcCcCCcccCHHHHHHHHHHHHHHHH-HhCcCCC--EEEEecCCCCCcee-eec
Confidence 37999999999999999743 333459999888 333 22333444433 3222233 56531 24787 555
Q ss_pred CCCCChHH
Q 008773 209 RYENDWDV 216 (554)
Q Consensus 209 R~d~rw~r 216 (554)
= +.|..
T Consensus 189 ~--~~~~~ 194 (378)
T TIGR02635 189 I--PDWGT 194 (378)
T ss_pred C--CcHHH
Confidence 2 44544
No 118
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.38 E-value=3.7e+02 Score=27.09 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=46.0
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCC--c---hHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCC
Q 008773 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDG--S---SVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYEND 213 (554)
Q Consensus 139 ~~hl~al~~~a~~~g~~~v~vH~~~DGRD~~p~--s---~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDR~d~r 213 (554)
-+-+..+.++++++|...+.+|+-.++.-..|. - +++.++...+.++++ |+. .|....|++- .-++ +..
T Consensus 44 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~l---G~~-~v~~~~g~~~-~~~~-~~~ 117 (279)
T cd00019 44 KERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEEL---GIR-LLVFHPGSYL-GQSK-EEG 117 (279)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEECCCCCC-CCCH-HHH
Confidence 367788888888883336888876655444443 2 334444444444555 663 4555567543 3233 556
Q ss_pred hHHHHHHHHHHH
Q 008773 214 WDVVKRGWDAQV 225 (554)
Q Consensus 214 w~r~~~ay~~~~ 225 (554)
|+++...++.++
T Consensus 118 ~~~~~~~l~~l~ 129 (279)
T cd00019 118 LKRVIEALNELI 129 (279)
T ss_pred HHHHHHHHHHHH
Confidence 666555555554
No 119
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.35 E-value=3.6e+02 Score=25.31 Aligned_cols=62 Identities=11% Similarity=-0.035 Sum_probs=36.0
Q ss_pred HHHHHHhCCCcEEEEeCCCCccCCCCCC-H---HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecC
Q 008773 406 AKKAILSRRFHQVRVNLPNSDMVGHTGD-I---EATVVACKAADEAVKIIIDAIEKVGGIYLVTAD 467 (554)
Q Consensus 406 ai~~I~~~~~dfi~vnfan~DmvGHtg~-~---~a~~~aIe~vD~~lgrLl~al~~~gt~iIITSD 467 (554)
+.+.+.+.+||.+++.+..=|....... . ....+-.+.+.+.+..+++.+++.+..||+.+.
T Consensus 51 ~~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~~ 116 (200)
T cd01829 51 LKELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVGL 116 (200)
T ss_pred HHHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 3444566789999999876664321111 0 000111345556777888888876766666654
No 120
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=20.32 E-value=6.4e+02 Score=29.25 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=35.0
Q ss_pred CCCcCchhHhhhhhhc-C----CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecC
Q 008773 104 GKIYQDEGFNYIKPSF-E----TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 165 (554)
Q Consensus 104 g~~~~n~~~~~~~~~~-~----~~~lHl~GL~SdggvHsh~~hl~al~~~a~~~g~~~v~vH~~~DG 165 (554)
|.-.-..+|..+.+.+ . .+...++=|+|||--++-. -....++.+++.|++ |++=.+.+|
T Consensus 125 GgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~-dvleaAq~LR~~GVe-I~vIGVG~g 189 (576)
T PTZ00441 125 GKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKY-RALEESRKLKDRNVK-LAVIGIGQG 189 (576)
T ss_pred CCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcc-cHHHHHHHHHHCCCE-EEEEEeCCC
Confidence 3333334555544444 2 1356889999999865543 344446778889994 444344333
No 121
>PRK01060 endonuclease IV; Provisional
Probab=20.21 E-value=3.5e+02 Score=27.25 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.6
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEE
Q 008773 138 RLDQLQLLLKGASERGAKRIRLHI 161 (554)
Q Consensus 138 h~~hl~al~~~a~~~g~~~v~vH~ 161 (554)
.++.+...+++|++.|++.|.+|.
T Consensus 87 s~~~~~~~i~~A~~lga~~vv~h~ 110 (281)
T PRK01060 87 SRDFLIQEIERCAALGAKLLVFHP 110 (281)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcC
Confidence 477899999999999999999995
No 122
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=20.21 E-value=2.4e+02 Score=26.84 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=7.6
Q ss_pred EEEEEeccCCC
Q 008773 19 AVVVLDGWGEF 29 (554)
Q Consensus 19 ~L~ilDG~G~~ 29 (554)
|+++||+=|-=
T Consensus 5 vv~vlD~S~Sm 15 (186)
T cd01480 5 ITFVLDSSESV 15 (186)
T ss_pred EEEEEeCCCcc
Confidence 56789986643
No 123
>PRK12677 xylose isomerase; Provisional
Probab=20.11 E-value=4.1e+02 Score=28.96 Aligned_cols=79 Identities=22% Similarity=0.182 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHcCCCeEEE------E-EeecCCCCCCCc-----hHHHHHHHHHHHHHHhcCCCCceEEEEeecc----c
Q 008773 141 QLQLLLKGASERGAKRIRL------H-ILTDGRDVLDGS-----SVGFVETIEKDLAELRGKGVDAQIASGGGRM----Y 204 (554)
Q Consensus 141 hl~al~~~a~~~g~~~v~v------H-~~~DGRD~~p~s-----~~~~l~~l~~~~~~~~~~~~~~~iasv~GR~----y 204 (554)
.+..+.+++++.|++=+.+ | .|.||-=+.|.. ++.++++-.+..+++ |+. .|...+||- .
T Consensus 68 ~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eL---Ga~-~Vvv~~G~~g~~~~ 143 (384)
T PRK12677 68 IIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAEL---GAK-TYVMWGGREGAEYD 143 (384)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHh---CCC-EEEEeeCCCCccCc
Confidence 4677888888999963222 3 367776666644 456666666666676 763 555558873 2
Q ss_pred ccccCCCCChHHHHHHHHHH
Q 008773 205 VTMDRYENDWDVVKRGWDAQ 224 (554)
Q Consensus 205 ~aMDR~d~rw~r~~~ay~~~ 224 (554)
...|+ .+.|+|..++.+.+
T Consensus 144 ~~~d~-~~a~~~~~eaL~~l 162 (384)
T PRK12677 144 AAKDV-RAALDRYREAIDLL 162 (384)
T ss_pred ccCCH-HHHHHHHHHHHHHH
Confidence 14454 55566655555444
Done!