Query 008775
Match_columns 554
No_of_seqs 360 out of 1916
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:25:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.9 9.6E-06 3.3E-10 79.2 36.8 25 422-446 231-255 (284)
2 1c1g_A Tropomyosin; contractIl 98.9 1.1E-05 3.7E-10 78.8 36.8 24 227-250 13-36 (284)
3 1i84_S Smooth muscle myosin he 98.5 4.3E-07 1.5E-11 108.0 11.7 113 227-339 857-969 (1184)
4 1i84_S Smooth muscle myosin he 98.3 2E-06 6.8E-11 102.3 12.2 39 225-263 862-900 (1184)
5 3l51_B Structural maintenance 98.2 1.7E-07 5.7E-12 86.5 0.5 58 154-219 93-160 (166)
6 3l51_A Structural maintenance 98.2 1.9E-07 6.6E-12 85.6 0.4 59 155-217 98-161 (161)
7 3nwc_A SMC protein; structural 98.1 5.5E-07 1.9E-11 84.6 2.0 55 158-220 110-169 (189)
8 1gxl_A SMC, chromosome segrega 98.1 9.3E-07 3.2E-11 84.4 2.0 84 153-240 119-210 (213)
9 3na7_A HP0958; flagellar bioge 98.0 0.0035 1.2E-07 61.5 26.2 48 330-377 95-142 (256)
10 3na7_A HP0958; flagellar bioge 97.9 0.0051 1.7E-07 60.3 24.5 8 336-343 94-101 (256)
11 2wd5_B Structural maintenance 97.8 4.9E-06 1.7E-10 79.6 1.1 58 157-220 125-187 (213)
12 2wd5_A Structural maintenance 97.8 2.1E-06 7.1E-11 83.5 -1.9 84 156-243 132-225 (233)
13 3o0z_A RHO-associated protein 97.7 0.014 4.6E-07 52.6 22.6 73 301-373 59-131 (168)
14 1gxj_A SMC, chromosome segrega 97.6 7.2E-06 2.4E-10 76.6 0.1 63 153-219 107-174 (186)
15 2fxo_A Myosin heavy chain, car 97.6 0.0096 3.3E-07 52.0 19.3 114 225-338 11-124 (129)
16 2v71_A Nuclear distribution pr 97.6 0.019 6.5E-07 53.0 21.8 39 339-377 116-154 (189)
17 2efr_A General control protein 97.5 0.052 1.8E-06 48.5 26.0 51 331-381 69-119 (155)
18 3o0z_A RHO-associated protein 97.2 0.12 4.1E-06 46.5 22.9 6 392-397 122-127 (168)
19 3vkg_A Dynein heavy chain, cyt 97.0 0.45 1.5E-05 61.2 32.1 7 439-445 2131-2137(3245)
20 2efr_A General control protein 96.9 0.22 7.4E-06 44.5 26.1 122 280-401 32-153 (155)
21 2dfs_A Myosin-5A; myosin-V, in 96.8 0.047 1.6E-06 63.9 19.7 11 171-181 741-751 (1080)
22 2dfs_A Myosin-5A; myosin-V, in 96.7 0.075 2.6E-06 62.3 20.5 6 86-91 508-513 (1080)
23 2fxo_A Myosin heavy chain, car 96.5 0.36 1.2E-05 41.8 20.3 31 370-400 86-116 (129)
24 3u1c_A Tropomyosin alpha-1 cha 96.4 0.17 5.8E-06 42.0 15.5 39 335-373 61-99 (101)
25 3u59_A Tropomyosin beta chain; 96.1 0.28 9.5E-06 40.6 15.0 36 337-372 63-98 (101)
26 3oja_B Anopheles plasmodium-re 95.6 0.16 5.6E-06 55.4 15.2 44 332-375 537-580 (597)
27 2b9c_A Striated-muscle alpha t 95.4 0.26 8.9E-06 43.7 12.9 43 360-402 73-115 (147)
28 4gkw_A Spindle assembly abnorm 94.2 2.3 7.9E-05 36.1 23.5 55 348-402 100-154 (167)
29 3bas_A Myosin heavy chain, str 93.9 0.94 3.2E-05 36.5 11.7 74 225-305 12-85 (89)
30 3tnu_A Keratin, type I cytoske 93.8 1.1 3.7E-05 38.9 12.8 25 245-269 35-59 (131)
31 2v4h_A NF-kappa-B essential mo 92.9 1.3 4.5E-05 36.7 11.0 67 210-280 11-80 (110)
32 3hnw_A Uncharacterized protein 92.7 1.5 5E-05 38.4 12.0 8 205-212 15-23 (138)
33 3tnu_B Keratin, type II cytosk 92.6 2.2 7.4E-05 36.8 12.9 16 250-265 38-53 (129)
34 1ic2_A Tropomyosin alpha chain 92.3 2.8 9.5E-05 33.0 12.1 32 347-378 28-59 (81)
35 3tnu_B Keratin, type II cytosk 91.9 3.5 0.00012 35.5 13.3 33 324-356 35-67 (129)
36 3tnu_A Keratin, type I cytoske 91.3 3.1 0.00011 35.9 12.4 33 324-356 37-69 (131)
37 3hnw_A Uncharacterized protein 91.0 3.2 0.00011 36.2 12.2 48 297-344 75-122 (138)
38 3swk_A Vimentin; cytoskeleton, 90.9 3.4 0.00012 33.0 11.2 15 293-307 45-59 (86)
39 3ghg_A Fibrinogen alpha chain; 90.9 5.2 0.00018 42.0 15.4 26 353-378 131-156 (562)
40 3s4r_A Vimentin; alpha-helix, 90.3 6.3 0.00022 31.9 13.0 37 226-262 8-44 (93)
41 3a7p_A Autophagy protein 16; c 89.7 0.74 2.5E-05 40.5 6.8 89 3-91 38-126 (152)
42 4gkw_A Spindle assembly abnorm 88.2 11 0.00038 32.0 23.7 62 225-286 16-77 (167)
43 3mq7_A Bone marrow stromal ant 84.9 16 0.00054 30.5 14.4 27 295-321 30-56 (121)
44 1m1j_B Fibrinogen beta chain; 84.9 41 0.0014 35.2 17.9 10 479-488 372-381 (464)
45 3jsv_C NF-kappa-B essential mo 83.9 11 0.00039 30.2 10.1 52 229-280 4-58 (94)
46 3ghg_A Fibrinogen alpha chain; 82.3 22 0.00075 37.4 14.2 9 392-400 180-188 (562)
47 3cvf_A Homer-3, homer protein 80.7 15 0.0005 28.7 9.4 38 280-317 17-54 (79)
48 2zqm_A Prefoldin beta subunit 79.5 25 0.00086 29.0 14.3 13 235-247 14-26 (117)
49 2i1j_A Moesin; FERM, coiled-co 78.6 5.8 0.0002 43.1 9.1 21 428-448 511-531 (575)
50 3mq9_A Bone marrow stromal ant 78.5 60 0.002 33.7 16.9 23 295-317 402-424 (471)
51 3efg_A Protein SLYX homolog; x 78.1 6.8 0.00023 30.6 6.9 48 52-99 12-59 (78)
52 2v66_B Nuclear distribution pr 78.0 29 0.00099 28.9 17.2 21 333-353 78-98 (111)
53 1go4_E MAD1 (mitotic arrest de 77.5 3 0.0001 34.2 4.8 70 30-102 16-95 (100)
54 3jsv_C NF-kappa-B essential mo 76.5 28 0.00096 27.9 10.2 40 363-402 43-82 (94)
55 4h22_A Leucine-rich repeat fli 75.9 31 0.0011 28.2 10.9 10 264-273 25-34 (103)
56 2zqm_A Prefoldin beta subunit 75.2 34 0.0011 28.2 13.8 31 239-269 11-41 (117)
57 2w83_C C-JUN-amino-terminal ki 73.6 29 0.00098 26.7 10.2 37 361-397 38-74 (77)
58 1fxk_A Prefoldin; archaeal pro 71.4 39 0.0013 27.3 13.1 16 238-253 12-27 (107)
59 3s4r_A Vimentin; alpha-helix, 69.4 42 0.0014 26.9 13.5 34 331-364 55-88 (93)
60 4h22_A Leucine-rich repeat fli 68.8 46 0.0016 27.1 10.9 9 263-271 31-39 (103)
61 2xzr_A Immunoglobulin-binding 67.6 46 0.0016 26.6 17.9 17 234-250 13-29 (114)
62 3l4q_C Phosphatidylinositol 3- 67.2 70 0.0024 28.6 17.5 15 231-245 14-28 (170)
63 2ke4_A CDC42-interacting prote 65.7 44 0.0015 27.1 9.3 28 287-314 19-46 (98)
64 1deq_A Fibrinogen (alpha chain 65.4 1.2E+02 0.0041 30.6 20.5 9 389-397 149-157 (390)
65 2xzr_A Immunoglobulin-binding 63.3 56 0.0019 26.1 16.9 43 360-402 62-104 (114)
66 3nmd_A CGMP dependent protein 62.1 35 0.0012 26.0 7.4 43 229-271 21-63 (72)
67 1m1j_C Fibrinogen gamma chain; 57.4 1.8E+02 0.006 29.9 15.8 9 479-487 305-313 (409)
68 2w83_C C-JUN-amino-terminal ki 56.8 64 0.0022 24.7 9.8 20 225-244 7-26 (77)
69 3i00_A HIP-I, huntingtin-inter 55.4 93 0.0032 26.2 11.5 40 361-400 41-80 (120)
70 3a7o_A Autophagy protein 16; c 55.3 56 0.0019 24.6 7.2 47 29-75 14-60 (75)
71 3c9i_A Tail needle protein GP2 52.4 1.4E+02 0.0048 27.3 11.3 71 320-390 79-149 (242)
72 3r6n_A Desmoplakin; spectrin r 52.3 2.2E+02 0.0075 29.5 29.8 30 422-451 243-272 (450)
73 1d7m_A Cortexillin I; coiled-c 48.6 98 0.0034 24.4 16.5 19 339-357 74-92 (101)
74 2k48_A Nucleoprotein; viral pr 45.3 1.2E+02 0.0042 24.6 9.8 20 421-440 82-101 (107)
75 1m1j_A Fibrinogen alpha subuni 45.2 2.8E+02 0.0095 28.7 15.2 15 227-241 65-79 (491)
76 1wle_A Seryl-tRNA synthetase; 44.4 1.6E+02 0.0055 31.0 11.9 15 476-490 401-415 (501)
77 2l5g_B Putative uncharacterize 44.2 63 0.0022 21.8 5.4 35 27-61 3-37 (42)
78 3efg_A Protein SLYX homolog; x 44.0 74 0.0025 24.6 6.9 46 28-73 9-54 (78)
79 1lwu_C Fibrinogen gamma chain; 42.8 58 0.002 32.4 7.7 15 479-493 225-240 (323)
80 2nrj_A HBL B protein; enteroto 42.3 2.7E+02 0.0092 27.7 13.5 186 251-445 119-335 (346)
81 3ghg_B Fibrinogen beta chain; 41.7 3.2E+02 0.011 28.4 14.2 10 479-488 368-377 (461)
82 3u0c_A Invasin IPAB, 62 kDa an 40.1 2E+02 0.0068 25.5 11.7 31 419-449 115-145 (201)
83 1m3w_A H10H24; four-helix bund 40.0 1.5 5.2E-05 26.6 -2.6 10 473-482 2-11 (32)
84 3qne_A Seryl-tRNA synthetase, 39.7 1.4E+02 0.0047 31.4 10.4 30 243-272 35-64 (485)
85 3aco_A Pacsin2, protein kinase 38.4 3E+02 0.01 27.1 24.3 11 476-486 309-319 (350)
86 1kd8_A GABH AIV, GCN4 acid bas 35.7 66 0.0023 20.8 4.3 24 294-317 5-28 (36)
87 2dq0_A Seryl-tRNA synthetase; 35.6 1.6E+02 0.0056 30.6 10.2 18 326-343 84-101 (455)
88 3abh_A Pacsin2, protein kinase 35.4 3.1E+02 0.011 26.3 24.4 11 438-448 275-285 (312)
89 3tkl_B LIDA protein, substrate 35.2 1.1E+02 0.0037 28.2 7.4 111 349-461 38-149 (267)
90 1kd8_B GABH BLL, GCN4 acid bas 33.4 98 0.0034 20.0 5.1 24 294-317 5-28 (36)
91 3cl3_D NF-kappa-B essential mo 32.8 1E+02 0.0035 26.0 6.4 39 363-401 58-96 (130)
92 2yy0_A C-MYC-binding protein; 32.2 97 0.0033 22.0 5.3 31 227-257 19-49 (53)
93 4dzn_A Coiled-coil peptide CC- 32.2 75 0.0026 19.4 3.9 19 33-51 9-27 (33)
94 3hhm_B NISH2 P85alpha; PI3KCA, 31.5 4.2E+02 0.014 26.7 17.5 8 471-478 296-303 (373)
95 3iox_A AGI/II, PA; alpha helix 31.5 4.7E+02 0.016 27.3 16.6 17 424-440 90-106 (497)
96 3he5_A Synzip1; heterodimeric 31.4 1.2E+02 0.0039 20.2 6.8 10 329-338 35-44 (49)
97 4e61_A Protein BIM1; EB1-like 30.8 2.2E+02 0.0075 23.3 7.9 33 65-97 29-61 (106)
98 4fi5_A Nucleoprotein; structur 30.3 2.3E+02 0.0079 23.3 8.8 22 420-441 68-89 (113)
99 1f5n_A Interferon-induced guan 29.0 5.7E+02 0.019 27.4 16.0 122 254-375 458-582 (592)
100 1ses_A Seryl-tRNA synthetase; 28.4 1.8E+02 0.0063 29.8 9.0 18 325-342 78-95 (421)
101 1lq7_A Alpha3W; three helix bu 28.3 96 0.0033 21.9 4.6 18 327-344 27-44 (67)
102 3lss_A Seryl-tRNA synthetase; 28.3 3.4E+02 0.011 28.5 11.0 32 242-273 38-69 (484)
103 3vmx_A Voltage-gated hydrogen 27.7 1.6E+02 0.0053 20.5 5.9 34 67-100 10-43 (48)
104 1fxk_C Protein (prefoldin); ar 27.0 2.7E+02 0.0094 23.2 14.3 34 229-262 3-36 (133)
105 1hjb_A Ccaat/enhancer binding 26.3 1E+02 0.0036 24.3 5.1 28 73-100 48-75 (87)
106 3ljm_A Coil Ser L9C; de novo d 26.2 1.1E+02 0.0038 18.4 4.2 26 35-60 3-28 (31)
107 3tnf_B LIDA, RAS-related prote 26.1 3.6E+02 0.012 26.0 9.6 111 349-461 21-132 (384)
108 2zdi_C Prefoldin subunit alpha 25.2 3.2E+02 0.011 23.4 9.6 87 232-318 7-140 (151)
109 1ytz_T Troponin T; muscle, THI 25.0 2.2E+02 0.0076 23.3 7.1 42 232-273 47-88 (107)
110 1j1d_B Troponin T, TNT; THIN f 25.0 1.9E+02 0.0065 23.7 6.6 36 236-271 51-86 (106)
111 1gu4_A CAAT/enhancer binding p 24.4 1.1E+02 0.0037 23.7 4.8 28 31-58 41-68 (78)
112 3ra3_B P2F; coiled coil domain 23.7 80 0.0027 18.6 2.9 22 31-52 5-26 (28)
113 4fla_A Regulation of nuclear P 23.5 3.7E+02 0.013 23.4 12.4 6 214-219 16-21 (152)
114 2b5u_A Colicin E3; high resolu 23.4 6.5E+02 0.022 26.3 21.9 49 296-344 320-368 (551)
115 3ghg_C Fibrinogen gamma chain; 22.2 6.4E+02 0.022 25.7 16.0 15 479-493 305-320 (411)
116 2ic9_A Nucleocapsid protein; h 21.9 3.1E+02 0.011 21.9 9.5 23 420-442 51-73 (96)
117 2wq1_A General control protein 21.5 1.6E+02 0.0056 18.6 5.0 23 294-316 4-26 (33)
118 3c3f_A Alpha/beta peptide with 21.5 1.7E+02 0.0057 18.7 4.4 23 294-316 5-27 (34)
119 2ic6_A Nucleocapsid protein; h 20.7 2.9E+02 0.01 21.2 9.7 20 421-440 52-71 (78)
120 3ni0_A Bone marrow stromal ant 20.2 3.3E+02 0.011 21.7 11.1 65 316-380 23-87 (99)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.95 E-value=9.6e-06 Score=79.23 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 422 DLEVAAGKLAECQKTIQSLGKQLKS 446 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~ 446 (554)
.+..+...+..+...+..+...+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (284)
T 1c1g_A 231 KLKEAETRAEFAERSVTKLEKSIDD 255 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.94 E-value=1.1e-05 Score=78.81 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 227 AELEAMIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei 250 (554)
.++..+...+..+...+..+...+
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.46 E-value=4.3e-07 Score=108.00 Aligned_cols=113 Identities=29% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEK 306 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~el 306 (554)
.++..+..++..++..+..++..+.+++.++..+..++..+...+......+..++..+..+..++..++..+..++.++
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666555555554444444444444444444445544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 307 AELEMALAKSQDSVEASELQLREATMQLEELQR 339 (554)
Q Consensus 307 eele~el~~l~~el~~~e~~i~ele~ele~l~~ 339 (554)
.+++..+..+...+..++..+..++..+++++.
T Consensus 937 ee~ee~l~el~~e~~~le~el~~L~~eleele~ 969 (1184)
T 1i84_S 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969 (1184)
T ss_dssp HHHHHC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333333333333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.31 E-value=2e-06 Score=102.32 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAE 263 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e 263 (554)
+..++..++..+..++..+..++.++..++.++..+...
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~ 900 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444444444444333
No 5
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=98.23 E-value=1.7e-07 Score=86.47 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=50.0
Q ss_pred hhhHHHhhhhhh-hhccc--cccCCCceeccCchh--hc----chhhhhhhceeeecCCCCCc-cccCCcccCCCc
Q 008775 154 SDSWASALIAEL-DQFKN--EKAVNRNLSASSPEI--DL----MDDFLEMEQLAAMPNNKSGK-HVESGNVTTQST 219 (554)
Q Consensus 154 ~~~~a~~li~~~-~~~~~--~~~~g~~~v~~~~~~--~l----~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~ 219 (554)
...||.++|.|+ +.|++ .++||+++||++++. .+ ...+ |+||+ +|+ +.++|+||||+-
T Consensus 93 ~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~----r~VTl----dGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 93 NTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRW----RVVTL----QGQIIEQSGTMSGGLE 160 (166)
T ss_dssp GCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBC----CEEET----TSCEECTTCCEEECCG
T ss_pred chhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCc----EEEEC----CCEEEeCCEEEECCCc
Confidence 346999999995 69998 999999999999998 33 2346 89999 999 999999999985
No 6
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=98.21 E-value=1.9e-07 Score=85.58 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=43.2
Q ss_pred hhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCC
Q 008775 155 DSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQ 217 (554)
Q Consensus 155 ~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG 217 (554)
..||.++|.|++.|++ .++||+++||++++. .+....-..-|+||+ +|+ ++++|+||||
T Consensus 98 ~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTl----dGd~i~~~G~~tGG 161 (161)
T 3l51_A 98 VHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTL----GGDVFDPHGTLSGG 161 (161)
T ss_dssp EEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEET----TSCEECCC------
T ss_pred hhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeC----CCeEEcCCEEEecC
Confidence 5699999999999998 899999999999998 443221011289999 999 9999999998
No 7
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=98.15 E-value=5.5e-07 Score=84.64 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=49.6
Q ss_pred HHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcc
Q 008775 158 ASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTL 220 (554)
Q Consensus 158 a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~ 220 (554)
|.++|.|++.|.+ .++||+++||++++. .+...+ |+||+ +|+ +.++|+||||+..
T Consensus 110 a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l~~~~----r~VTl----dGd~i~~~G~~tGG~~~ 169 (189)
T 3nwc_A 110 AVDVIEYDQKIENAVKFALGDTVIVNSMEEARPHIGKV----RMVTI----EGELYERSGAITGGHFR 169 (189)
T ss_dssp GGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGGTTTS----EEEET----TSCEECTTSCEECSCSS
T ss_pred EeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHHhCCC----eEEeC----CCcEEECCEEEEeCCCC
Confidence 8899999999998 899999999999998 554555 99999 999 9999999999864
No 8
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=98.07 E-value=9.3e-07 Score=84.42 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=58.3
Q ss_pred chhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcch---hhh
Q 008775 153 CSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA---ESS 224 (554)
Q Consensus 153 ~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~---~~~ 224 (554)
++.+|+.++|.+++.|.+ .++||++++|++++. .++....-..|+||+ +|+ +.++|.|+||+... ...
T Consensus 119 g~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT~----~G~~~~~~G~~~gg~~~~~~~~l~ 194 (213)
T 1gxl_A 119 GFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATL----DGELISGRGAITGGREERSSNVFE 194 (213)
T ss_dssp TEEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHHTCSSCEEECT----TSCEECTTSCEEECCCSSCCCTTH
T ss_pred CcHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEec----CCeEEcCCceEECCCCccccchhh
Confidence 344689999999999988 899999999999988 443221111288999 999 99999999997531 122
Q ss_pred HHHHHHHHHHHHHHHH
Q 008775 225 LRAELEAMIHRTAELE 240 (554)
Q Consensus 225 l~~ei~~l~~el~eLe 240 (554)
...+|++++.++..++
T Consensus 195 ~~~el~~l~~~l~~~~ 210 (213)
T 1gxl_A 195 RRIKLKHLEQEMEETE 210 (213)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555444
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.00 E-value=0.0035 Score=61.48 Aligned_cols=48 Identities=8% Similarity=0.116 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 330 ATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVE 377 (554)
Q Consensus 330 le~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~ 377 (554)
+..+++.++..+..++..+..+..++..++..+..+...+..++.++.
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333344444444443333
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.85 E-value=0.0051 Score=60.30 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008775 336 ELQRELNL 343 (554)
Q Consensus 336 ~l~~el~~ 343 (554)
.+..+++.
T Consensus 94 aL~kEie~ 101 (256)
T 3na7_A 94 SLNIEEDI 101 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 11
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.77 E-value=4.9e-06 Score=79.62 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcc
Q 008775 157 WASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTL 220 (554)
Q Consensus 157 ~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~ 220 (554)
++.++|.|++.|.+ .++||+++||++++. .++..+ ..++||+ +|+ +.++|.|+||+..
T Consensus 125 ~l~~~v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~~--~~~~VTl----dG~~~~~~G~~tgG~~~ 187 (213)
T 2wd5_B 125 PMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAF--TMDCITL----EGDQVSHRGALTGGYYD 187 (213)
T ss_dssp EGGGGCEECGGGHHHHHHHHTTEEEESSHHHHHHHHHHS--SCEEECT----TCCEECTTSCEEECCCC
T ss_pred eHHHHccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhc--CceEEeC----CCcEECCCeEEECCCCC
Confidence 35688999999988 899999999999988 444332 2388999 999 9999999999854
No 12
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.75 E-value=2.1e-06 Score=83.53 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=55.2
Q ss_pred hHHHhhhhh-hhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcch----hhhH
Q 008775 156 SWASALIAE-LDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA----ESSL 225 (554)
Q Consensus 156 ~~a~~li~~-~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~----~~~l 225 (554)
.|+.++|.+ ++.|.+ .++||+++||++++. .++...-...|+||+ +|+ +.++|+||||+... ..|.
T Consensus 132 ~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTl----dG~~~~~~G~~tGG~~~~~~~~~~~~ 207 (233)
T 2wd5_A 132 KLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVAL----DGTLFQKSGVISGGASDLKAKARRWD 207 (233)
T ss_dssp EESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEET----TCCEECTTSCEEECHHHHHHHTTHHH
T ss_pred hHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEec----CCEEEeCCeeEeCCCchhhhhhhhcc
Confidence 378899999 689988 899999999999988 443211001289999 999 99999999997432 2355
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008775 226 RAELEAMIHRTAELEQKL 243 (554)
Q Consensus 226 ~~ei~~l~~el~eLe~~l 243 (554)
..+++.|..++..+..++
T Consensus 208 ~~e~~~l~~~~~~l~~~~ 225 (233)
T 2wd5_A 208 EKAVDKLKEKKGRLTEEL 225 (233)
T ss_dssp HHHTTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666655555443
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.72 E-value=0.014 Score=52.64 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008775 301 KMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLE 373 (554)
Q Consensus 301 ~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le 373 (554)
.++..+..++.++..++..+...+.........+.+++..+..+...+..+...+..+..+...+..++..++
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443433333333333333344444444444444444444444444444444444443
No 14
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=97.64 E-value=7.2e-06 Score=76.62 Aligned_cols=63 Identities=10% Similarity=0.108 Sum_probs=50.6
Q ss_pred chhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCc
Q 008775 153 CSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQST 219 (554)
Q Consensus 153 ~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~ 219 (554)
++.+||.++|.|++.|.+ .++||+++||++++. .+.....-..|+||+ +|+ +.++|.|+||+.
T Consensus 107 g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTl----dG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 107 GFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATL----DGELISGRGAITGGRE 174 (186)
T ss_dssp TEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEET----TSCEECTTSCEEEEEC
T ss_pred CchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEeC----CCeEEcCCEEEECCCC
Confidence 445689999999999998 999999999999988 333221112289999 999 999999999975
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.58 E-value=0.0096 Score=51.97 Aligned_cols=114 Identities=23% Similarity=0.320 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEA 304 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ 304 (554)
...++..+...+..+...+...+.....++.....+..+++.+...++.-...+.+.+..+..+......|+..+..+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888999999999999999999999999999999999999999888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 305 EKAELEMALAKSQDSVEASELQLREATMQLEELQ 338 (554)
Q Consensus 305 eleele~el~~l~~el~~~e~~i~ele~ele~l~ 338 (554)
.++..+.....+......++..+..++..++++.
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777776666666666666665555543
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.57 E-value=0.019 Score=52.96 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 339 RELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVE 377 (554)
Q Consensus 339 ~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~ 377 (554)
..-+.++.....+...+..++..+...-.+..-|+.++.
T Consensus 116 q~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 116 QANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444445555555554
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.48 E-value=0.052 Score=48.51 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 331 TMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERA 381 (554)
Q Consensus 331 e~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~ 381 (554)
...-+.+..+|..+...+..++.+....+..+..++..++.++.++...+.
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke 119 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555555555544433
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.19 E-value=0.12 Score=46.51 Aligned_cols=6 Identities=0% Similarity=0.047 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008775 392 KLEEEQ 397 (554)
Q Consensus 392 eLe~el 397 (554)
.|.+.+
T Consensus 122 ~L~Ekl 127 (168)
T 3o0z_A 122 EAQDML 127 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.98 E-value=0.45 Score=61.24 Aligned_cols=7 Identities=14% Similarity=-0.007 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 008775 439 SLGKQLK 445 (554)
Q Consensus 439 ~L~~ql~ 445 (554)
.+...+.
T Consensus 2131 ~W~~~l~ 2137 (3245)
T 3vkg_A 2131 KWMIRLD 2137 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.90 E-value=0.22 Score=44.50 Aligned_cols=122 Identities=21% Similarity=0.265 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008775 280 ELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSME 359 (554)
Q Consensus 280 ~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le 359 (554)
..+........++..|+..+..+...+..++..-......-...+.+|..|...+.+.......+...+..++..+..++
T Consensus 32 raEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 32 RAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444443333333333344444444444444444444444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401 (554)
Q Consensus 360 ~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~ 401 (554)
.++..-+.++..+..++...-.....+...+..|..++.+++
T Consensus 112 d~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 112 DELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 555445555555555555544444555666666666666554
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.77 E-value=0.047 Score=63.93 Aligned_cols=11 Identities=0% Similarity=-0.191 Sum_probs=8.6
Q ss_pred cccCCCceecc
Q 008775 171 EKAVNRNLSAS 181 (554)
Q Consensus 171 ~~~~g~~~v~~ 181 (554)
.|.||.|.|+-
T Consensus 741 ~~~~G~TKVF~ 751 (1080)
T 2dfs_A 741 KYQFGKTKIFF 751 (1080)
T ss_dssp GEEECSSEEEE
T ss_pred hheeccccchh
Confidence 78889888863
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.69 E-value=0.075 Score=62.25 Aligned_cols=6 Identities=50% Similarity=1.093 Sum_probs=2.6
Q ss_pred HHHHHH
Q 008775 86 KLEAEC 91 (554)
Q Consensus 86 kLEae~ 91 (554)
=|..+|
T Consensus 508 lLdee~ 513 (1080)
T 2dfs_A 508 LLDEEC 513 (1080)
T ss_dssp HHHHHT
T ss_pred eccccc
Confidence 344444
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.51 E-value=0.36 Score=41.84 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 370 NSLEEEVEMERALSMQITVKCQKLEEEQWRM 400 (554)
Q Consensus 370 ~~Le~el~~~~~~~~e~e~kl~eLe~el~~~ 400 (554)
..+...++........+.....+++.++..+
T Consensus 86 ~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 86 KEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.43 E-value=0.17 Score=41.97 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008775 335 EELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLE 373 (554)
Q Consensus 335 e~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le 373 (554)
+..+..+......+...+......+.++..|.++|..|+
T Consensus 61 d~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 61 DQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333333444444444455555555554443
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.06 E-value=0.28 Score=40.63 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008775 337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSL 372 (554)
Q Consensus 337 l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~L 372 (554)
....+..+...+...+......+.++..|.++|..+
T Consensus 63 ~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 63 YSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444455555554443
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.56 E-value=0.16 Score=55.38 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008775 332 MQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEE 375 (554)
Q Consensus 332 ~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~e 375 (554)
..++.++.++..++........++..+..+...+..++.+++.+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333344444444444444444444444433
No 27
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.37 E-value=0.26 Score=43.70 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 360 ~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
........++..++..+............+|..|+.++..+..
T Consensus 73 rKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~ 115 (147)
T 2b9c_A 73 RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTN 115 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444545444444444455555555555544443
No 28
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=94.19 E-value=2.3 Score=36.10 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=36.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 348 KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 348 ~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
+.+++..|.....-+..+..-|-.|..++++++-...+....+..|.-+-+.++.
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vke 154 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKE 154 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 4566777777777777787888888888877776666665555555544444443
No 29
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.86 E-value=0.94 Score=36.49 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEA 304 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ 304 (554)
...++..+..++..+...+...+....+++.....+..+.++|..+ +.+++.....+......|+..+..+..
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888899999999888888888888888888888887766 555555555555555555555555543
Q ss_pred H
Q 008775 305 E 305 (554)
Q Consensus 305 e 305 (554)
.
T Consensus 85 r 85 (89)
T 3bas_A 85 L 85 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.80 E-value=1.1 Score=38.88 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 245 RMDAEKVDLEEKLDKMDAEKAELEE 269 (554)
Q Consensus 245 ~le~ei~eLe~~l~~l~~e~~~l~~ 269 (554)
....++.++...++.+..++..+..
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444443333333
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.93 E-value=1.3 Score=36.65 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=40.5
Q ss_pred cCCcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 008775 210 ESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA---EKAELEEKLEQMDAEKAE 280 (554)
Q Consensus 210 ~sG~~tGG~~~~~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~---e~~~l~~~ie~l~~el~~ 280 (554)
.+|.+..|... ...+|..|..++...+..|......+..++..+..... .+.-|+.++.-+..++..
T Consensus 11 ~~~~~~~~~~~----~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 11 SSGLVPRGSHM----ASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp --CCCCTTCCS----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcchhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45555554432 22378888888888888888888888777777776555 344444444444444433
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.75 E-value=1.5 Score=38.40 Aligned_cols=8 Identities=38% Similarity=0.439 Sum_probs=4.8
Q ss_pred CCc-cccCC
Q 008775 205 SGK-HVESG 212 (554)
Q Consensus 205 ~G~-~~~sG 212 (554)
.|. |.-.|
T Consensus 15 ~Gk~Y~i~g 23 (138)
T 3hnw_A 15 GGKVIKLGG 23 (138)
T ss_dssp TTEEEEECS
T ss_pred CCEEEEecC
Confidence 676 65554
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.64 E-value=2.2 Score=36.82 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 008775 250 KVDLEEKLDKMDAEKA 265 (554)
Q Consensus 250 i~eLe~~l~~l~~e~~ 265 (554)
+.++...++.+..++.
T Consensus 38 i~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEID 53 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 34
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.33 E-value=2.8 Score=33.00 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 347 SKRIVESNVSSMEMEAQTMTAKINSLEEEVEM 378 (554)
Q Consensus 347 ~~~~le~~L~~le~ei~~l~~~i~~Le~el~~ 378 (554)
.+...+......+.++..++.++..++.+++.
T Consensus 28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 28 DKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444333
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.85 E-value=3.5 Score=35.49 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008775 324 ELQLREATMQLEELQRELNLVNESKRIVESNVS 356 (554)
Q Consensus 324 e~~i~ele~ele~l~~el~~l~~~~~~le~~L~ 356 (554)
+.++.++...+..++.++..+......++..+.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333444444444444444444433333443333
No 36
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.29 E-value=3.1 Score=35.88 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008775 324 ELQLREATMQLEELQRELNLVNESKRIVESNVS 356 (554)
Q Consensus 324 e~~i~ele~ele~l~~el~~l~~~~~~le~~L~ 356 (554)
+.+|.++...+..++.++..+...+..++..+.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444444444433333443333
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.03 E-value=3.2 Score=36.21 Aligned_cols=48 Identities=10% Similarity=0.247 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 297 EKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344 (554)
Q Consensus 297 ~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l 344 (554)
.+...++.+++++..++..+..++...+.++..+..++..++.++..+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.91 E-value=3.4 Score=32.96 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 008775 293 AKLEEKIEKMEAEKA 307 (554)
Q Consensus 293 ~~Le~ele~le~ele 307 (554)
...+..+..+.+.++
T Consensus 45 ~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 45 EEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhhHH
Confidence 333333333333333
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.90 E-value=5.2 Score=42.04 Aligned_cols=26 Identities=8% Similarity=0.346 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 353 SNVSSMEMEAQTMTAKINSLEEEVEM 378 (554)
Q Consensus 353 ~~L~~le~ei~~l~~~i~~Le~el~~ 378 (554)
.+|..|+..+.++..+|..|+..|.-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555543
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.26 E-value=6.3 Score=31.86 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA 262 (554)
Q Consensus 226 ~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~ 262 (554)
+.+|..|..++..+-.++..++++-..|+.++..+..
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3568888999999988888888888888777766543
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.74 E-value=0.74 Score=40.54 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHH
Q 008775 3 LEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIK 82 (554)
Q Consensus 3 ~~le~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ 82 (554)
..+|++..+|-.....+...+..+...++...+..++.++..+...|.++..++......++..+.....+.-+..-.+.
T Consensus 38 d~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 38 NDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655433322111222345567777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHH
Q 008775 83 KVAKLEAEC 91 (554)
Q Consensus 83 ki~kLEae~ 91 (554)
++.+|+++-
T Consensus 118 kl~kLq~EN 126 (152)
T 3a7p_A 118 KLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777763
No 42
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=88.24 E-value=11 Score=31.97 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLE 286 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~ 286 (554)
+...+..++.++.+...++.-+-.=+.+-..+++++...-...+..+..+.++...++..+.
T Consensus 16 L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 16 LKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence 34445555555555544444333333344455555555554445555555544444444333
No 43
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.93 E-value=16 Score=30.46 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 295 LEEKIEKMEAEKAELEMALAKSQDSVE 321 (554)
Q Consensus 295 Le~ele~le~eleele~el~~l~~el~ 321 (554)
|+.++-..+.-+...+.+...|+..+.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~ 56 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVM 56 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444333
No 44
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=84.86 E-value=41 Score=35.20 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=5.2
Q ss_pred ccCCCCcccc
Q 008775 479 KLPSNVTFSH 488 (554)
Q Consensus 479 ~~~~~~~~~~ 488 (554)
..|.+-.|+-
T Consensus 372 ~~hng~~FST 381 (464)
T 1m1j_B 372 TIHNGMYFST 381 (464)
T ss_dssp TCCTTCCCBB
T ss_pred cccccccccc
Confidence 4565555543
No 45
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=83.87 E-value=11 Score=30.19 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 008775 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA---EKAELEEKLEQMDAEKAE 280 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~---e~~~l~~~ie~l~~el~~ 280 (554)
+..|...+...+..+......|..++..+..... .+..|+.++.-+..++..
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a 58 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 58 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666665555543 333444444444444433
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.31 E-value=22 Score=37.40 Aligned_cols=9 Identities=0% Similarity=0.029 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 008775 392 KLEEEQWRM 400 (554)
Q Consensus 392 eLe~el~~~ 400 (554)
.++.+|+.+
T Consensus 180 ~~QKQLeQv 188 (562)
T 3ghg_A 180 DQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 47
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.66 E-value=15 Score=28.72 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 280 ELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQ 317 (554)
Q Consensus 280 ~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~ 317 (554)
+++.+...+..++..++..++....+...+..++..+.
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444443
No 48
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=79.52 E-value=25 Score=29.03 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 008775 235 RTAELEQKLERMD 247 (554)
Q Consensus 235 el~eLe~~l~~le 247 (554)
....+..++..+.
T Consensus 14 ~~~~l~~~~~~l~ 26 (117)
T 2zqm_A 14 QLESYQQQLQLVV 26 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 49
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.63 E-value=5.8 Score=43.09 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008775 428 GKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~ql~~L~ 448 (554)
.+-..++..+..|...|..+.
T Consensus 511 ekn~~lq~qL~~L~~el~~~r 531 (575)
T 2i1j_A 511 ERNERLHNQLKALKQDLARSC 531 (575)
T ss_dssp HHCHHHHHHHHHHHHHHHTTB
T ss_pred HhhHHHHHHHHHHHHHHHHHh
Confidence 334444444444554444443
No 50
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.47 E-value=60 Score=33.69 Aligned_cols=23 Identities=13% Similarity=0.279 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008775 295 LEEKIEKMEAEKAELEMALAKSQ 317 (554)
Q Consensus 295 Le~ele~le~eleele~el~~l~ 317 (554)
|+++|.+.++....++.+-..|.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATAN 424 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc
Confidence 33344444444444444444443
No 51
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=78.14 E-value=6.8 Score=30.58 Aligned_cols=48 Identities=17% Similarity=-0.016 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008775 52 QSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC 99 (554)
Q Consensus 52 l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~ 99 (554)
+...+..++..+.+.+.+++.++....+.++.|++|..+++.|..-+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777788888888888888899999988887775443
No 52
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.98 E-value=29 Score=28.88 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008775 333 QLEELQRELNLVNESKRIVES 353 (554)
Q Consensus 333 ele~l~~el~~l~~~~~~le~ 353 (554)
.++++...++.+-+...-++.
T Consensus 78 SLeD~E~k~n~aiErnalLE~ 98 (111)
T 2v66_B 78 SLEDFEQRLNQAIERNAFLES 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333333333333
No 53
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.52 E-value=3 Score=34.18 Aligned_cols=70 Identities=30% Similarity=0.378 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHH---------H-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008775 30 DLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQ---------A-AETASKQHLDSIKKVAKLEAECRRLKAMAC 99 (554)
Q Consensus 30 ~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~---------~-~e~~~~q~~e~~~ki~kLEae~q~lr~~~~ 99 (554)
.|..+++.++.|+..|..++..|.-+|+.+.-.=+++.. + +..+..+ ....+.+|.++|.+||..++
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~---~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR---LREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666665555555433222222221 1 1222222 23678899999999999888
Q ss_pred hcC
Q 008775 100 RAS 102 (554)
Q Consensus 100 k~~ 102 (554)
+.-
T Consensus 93 ~lE 95 (100)
T 1go4_E 93 AME 95 (100)
T ss_dssp TCC
T ss_pred HHh
Confidence 753
No 54
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=76.46 E-value=28 Score=27.94 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 363 QTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 363 ~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
.-|+.++..+......+|.....+..+...|..++..+..
T Consensus 43 ~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 43 PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555554443
No 55
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.92 E-value=31 Score=28.17 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 008775 264 KAELEEKLEQ 273 (554)
Q Consensus 264 ~~~l~~~ie~ 273 (554)
...+..+|+-
T Consensus 25 Ksal~YqVdl 34 (103)
T 4h22_A 25 KTNFMYQVDT 34 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 56
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.17 E-value=34 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEE 269 (554)
Q Consensus 239 Le~~l~~le~ei~eLe~~l~~l~~e~~~l~~ 269 (554)
+-..+..+..++..+...+..+..++..+..
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 57
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.59 E-value=29 Score=26.68 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 361 EAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQ 397 (554)
Q Consensus 361 ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el 397 (554)
.++++..+...+..++.........+..++.++++++
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444
No 58
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=71.44 E-value=39 Score=27.33 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 008775 238 ELEQKLERMDAEKVDL 253 (554)
Q Consensus 238 eLe~~l~~le~ei~eL 253 (554)
.+..++..+..++..+
T Consensus 12 ~lq~~~~~l~~q~~~l 27 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTV 27 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 59
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=69.45 E-value=42 Score=26.90 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008775 331 TMQLEELQRELNLVNESKRIVESNVSSMEMEAQT 364 (554)
Q Consensus 331 e~ele~l~~el~~l~~~~~~le~~L~~le~ei~~ 364 (554)
+..+..++.++..+......++.++..+..++..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444444444444443333
No 60
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=68.81 E-value=46 Score=27.14 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 008775 263 EKAELEEKL 271 (554)
Q Consensus 263 e~~~l~~~i 271 (554)
+++-|+..+
T Consensus 31 qVdlLKD~L 39 (103)
T 4h22_A 31 QVDTLKDML 39 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 61
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=67.60 E-value=46 Score=26.63 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008775 234 HRTAELEQKLERMDAEK 250 (554)
Q Consensus 234 ~el~eLe~~l~~le~ei 250 (554)
.-+-.+......+...+
T Consensus 13 ~~~~~~~~~~~ri~~ai 29 (114)
T 2xzr_A 13 SKIYHIENEIARIKKLI 29 (114)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHH
Confidence 33333333333333333
No 62
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=67.23 E-value=70 Score=28.64 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 008775 231 AMIHRTAELEQKLER 245 (554)
Q Consensus 231 ~l~~el~eLe~~l~~ 245 (554)
.+-..+.++..++..
T Consensus 14 ~v~~~L~e~h~qy~~ 28 (170)
T 3l4q_C 14 AVGAQLKVYHQQYQD 28 (170)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 63
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=65.75 E-value=44 Score=27.12 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 287 KMDAEKAKLEEKIEKMEAEKAELEMALA 314 (554)
Q Consensus 287 ~l~~kl~~Le~ele~le~eleele~el~ 314 (554)
.+..++..++.+|++.....+-+...+.
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~ 46 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 64
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.43 E-value=1.2e+02 Score=30.62 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 008775 389 KCQKLEEEQ 397 (554)
Q Consensus 389 kl~eLe~el 397 (554)
+++.|+..+
T Consensus 149 kiqRLE~~I 157 (390)
T 1deq_A 149 DMKRLEVDI 157 (390)
T ss_pred HHHHHHHHH
Confidence 334444444
No 65
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=63.29 E-value=56 Score=26.12 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 360 MEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 360 ~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
..+...+++|..-..++........++..+..-++.++.++++
T Consensus 62 aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 62 ARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444444444455555555666666666777666665
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.15 E-value=35 Score=25.99 Aligned_cols=43 Identities=28% Similarity=0.256 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL 271 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~i 271 (554)
+..++..+....++|...+..|.+++..+++....+..|...+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.38 E-value=1.8e+02 Score=29.91 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.4
Q ss_pred ccCCCCccc
Q 008775 479 KLPSNVTFS 487 (554)
Q Consensus 479 ~~~~~~~~~ 487 (554)
..|.+-.|+
T Consensus 305 ~~h~g~~FS 313 (409)
T 1m1j_C 305 TYHNGMRFS 313 (409)
T ss_dssp SCCTTCCCB
T ss_pred ccccCceee
Confidence 345554444
No 68
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=56.84 E-value=64 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008775 225 LRAELEAMIHRTAELEQKLE 244 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~ 244 (554)
...+++.+..+..+|-.--.
T Consensus 7 mgkevEnLi~EN~eLl~TKN 26 (77)
T 2w83_C 7 MGREVENLILENTQLLETKN 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544333
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.42 E-value=93 Score=26.15 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 361 EAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM 400 (554)
Q Consensus 361 ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~ 400 (554)
.+..|...+..|+.++..-+.....+...+..|..++..+
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555544
No 70
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=55.28 E-value=56 Score=24.62 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 008775 29 PDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASK 75 (554)
Q Consensus 29 ~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~ 75 (554)
..+...+..+.+++.+...+|+.|...+.......+.....+-.+.-
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNI 60 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTI 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHH
Confidence 34555677777777777777777777777666666555555444433
No 71
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=52.39 E-value=1.4e+02 Score=27.32 Aligned_cols=71 Identities=8% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 320 VEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKC 390 (554)
Q Consensus 320 l~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl 390 (554)
+...+..|..++.++.+.+..|......+..++.++...+.++..++.++..+...+.........+...+
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~Dy 149 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADY 149 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhh
No 72
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=52.35 E-value=2.2e+02 Score=29.54 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 008775 422 DLEVAAGKLAECQKTIQSLGKQLKSLATLE 451 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L~~~~ 451 (554)
++......+.....+|..|..+-+.+.+..
T Consensus 243 kh~~le~~l~~~~~~I~~L~~qA~~l~~l~ 272 (450)
T 3r6n_A 243 ELEKEREKILEYKRQVQNLVNKSKKIVQLK 272 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455667788888888888888888776544
No 73
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=48.57 E-value=98 Score=24.40 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 008775 339 RELNLVNESKRIVESNVSS 357 (554)
Q Consensus 339 ~el~~l~~~~~~le~~L~~ 357 (554)
..+.+.++.+.-++-.+..
T Consensus 74 ~RLsKtEKDkAiLELkLaE 92 (101)
T 1d7m_A 74 ARLAKTEKDRAILELKLAE 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHH
Confidence 3333333333444433333
No 74
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=45.34 E-value=1.2e+02 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008775 421 EDLEVAAGKLAECQKTIQSL 440 (554)
Q Consensus 421 eel~~a~~kl~e~q~tI~~L 440 (554)
..+..+..|++++++.++.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443
No 75
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=45.24 E-value=2.8e+02 Score=28.69 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 008775 227 AELEAMIHRTAELEQ 241 (554)
Q Consensus 227 ~ei~~l~~el~eLe~ 241 (554)
..|+.|+..+..+..
T Consensus 65 ~rI~kLkn~L~~~s~ 79 (491)
T 1m1j_A 65 QRIDNIRQQLADSQN 79 (491)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444433
No 76
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=44.36 E-value=1.6e+02 Score=31.04 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=7.9
Q ss_pred CccccCCCCccccCC
Q 008775 476 ESWKLPSNVTFSHKR 490 (554)
Q Consensus 476 ~~~~~~~~~~~~~~~ 490 (554)
|-|..+.|..|.|+|
T Consensus 401 Ei~s~sn~~DfqarR 415 (501)
T 1wle_A 401 EVTSASNCTDFQSRR 415 (501)
T ss_dssp EEEEEEECTTHHHHH
T ss_pred eEEeccccccchhhh
Confidence 444555555555555
No 77
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.15 E-value=63 Score=21.80 Aligned_cols=35 Identities=6% Similarity=0.158 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008775 27 MDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61 (554)
Q Consensus 27 ~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~ 61 (554)
+..+|.++++....|+.--..+|..+++.+..++.
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888887765543
No 78
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=43.98 E-value=74 Score=24.57 Aligned_cols=46 Identities=22% Similarity=0.099 Sum_probs=31.0
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHH
Q 008775 28 DPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETA 73 (554)
Q Consensus 28 ~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~ 73 (554)
...+..|+..+|..++.+..-|..|...+..-..+++..++....+
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888877765555555554444333
No 79
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=42.77 E-value=58 Score=32.37 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=8.0
Q ss_pred ccCCCCcccc-CCCCC
Q 008775 479 KLPSNVTFSH-KRDLN 493 (554)
Q Consensus 479 ~~~~~~~~~~-~~~~~ 493 (554)
..|.+-.|+- -||-+
T Consensus 225 ~~h~g~~FST~DrDnD 240 (323)
T 1lwu_C 225 TTHLGMLFSTPERDND 240 (323)
T ss_dssp TCCTTCCCBBTTBCCS
T ss_pred cccCCCeeeccCcCCC
Confidence 5676666653 34443
No 80
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=42.34 E-value=2.7e+02 Score=27.70 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 251 VDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLE----KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQ 326 (554)
Q Consensus 251 ~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~----~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~ 326 (554)
..+..-+..+...+...+.....+...+..++..+. .+......+...+..-...+..++.+|..++.++.....-
T Consensus 119 ~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~~ 198 (346)
T 2nrj_A 119 ETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQL 198 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 327 LR----------------------EATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSM 384 (554)
Q Consensus 327 i~----------------------ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~ 384 (554)
+. .....+..++.++..+...+..... +...+..+...+..+...+........
T Consensus 199 i~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~----l~~~l~~~~~~~~~l~~~I~~Ai~al~ 274 (346)
T 2nrj_A 199 ESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVT----LNRVVGVAYSNINEMHKALDDAINALT 274 (346)
T ss_dssp C--CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 385 QITVKCQKLEEEQWRMKQEVELQQIAK-----SNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLK 445 (554)
Q Consensus 385 e~e~kl~eLe~el~~~~~e~~~~~~~~-----~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~ 445 (554)
.+...|..+...+..+.. .+.. ....+..++..+..+...=.++..-...+.+.+.
T Consensus 275 ~l~~~W~~m~~~~~~l~~-----~I~~~~~~i~~~~~~~i~~~L~~a~~~W~~l~~~a~~l~~~~~ 335 (346)
T 2nrj_A 275 YMSTQWHDLDSQYSGVLG-----HIENAAQKADQNKFKFLKPNLNAAKDSWKTLRTDAVTLKEGIK 335 (346)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHTTCCSTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHhhhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
No 81
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=41.69 E-value=3.2e+02 Score=28.35 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=5.4
Q ss_pred ccCCCCcccc
Q 008775 479 KLPSNVTFSH 488 (554)
Q Consensus 479 ~~~~~~~~~~ 488 (554)
..|.+-.|+-
T Consensus 368 ~~hng~~FST 377 (461)
T 3ghg_B 368 TIHNGMFFST 377 (461)
T ss_dssp SCCTTCCCBB
T ss_pred cccCCCcccc
Confidence 4566655543
No 82
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=40.05 E-value=2e+02 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008775 419 KQEDLEVAAGKLAECQKTIQSLGKQLKSLAT 449 (554)
Q Consensus 419 ~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~ 449 (554)
....++.+..++..|++.+..++.++..|.+
T Consensus 115 Ainny~~Ads~~~~lekKvn~aq~kLs~L~P 145 (201)
T 3u0c_A 115 QINKLKNADSKIKDLENKINQIQTRLSELDP 145 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3335677888888999999999988888864
No 83
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=40.03 E-value=1.5 Score=26.65 Aligned_cols=10 Identities=50% Similarity=0.817 Sum_probs=8.1
Q ss_pred CcCCccccCC
Q 008775 473 TVGESWKLPS 482 (554)
Q Consensus 473 ~~~~~~~~~~ 482 (554)
.|||-||+|.
T Consensus 2 gggeiwklhe 11 (32)
T 1m3w_A 2 GGGEIWKLHE 11 (32)
T ss_dssp CHHHHHHHHH
T ss_pred CcchHHHHHH
Confidence 3789999985
No 84
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=39.74 E-value=1.4e+02 Score=31.43 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 243 LERMDAEKVDLEEKLDKMDAEKAELEEKLE 272 (554)
Q Consensus 243 l~~le~ei~eLe~~l~~l~~e~~~l~~~ie 272 (554)
+-.+..+...+..+++.++.+.+.+..+|.
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 64 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIG 64 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555554443
No 85
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=38.44 E-value=3e+02 Score=27.06 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=0.0
Q ss_pred CccccCCCCcc
Q 008775 476 ESWKLPSNVTF 486 (554)
Q Consensus 476 ~~~~~~~~~~~ 486 (554)
|.|-.+.+++.
T Consensus 309 e~y~~~~~~~~ 319 (350)
T 3aco_A 309 EEWSADLNRTL 319 (350)
T ss_dssp -----------
T ss_pred ccCCcchhhhh
Confidence 45544444443
No 86
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.66 E-value=66 Score=20.82 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 294 KLEEKIEKMEAEKAELEMALAKSQ 317 (554)
Q Consensus 294 ~Le~ele~le~eleele~el~~l~ 317 (554)
+|+.+.+++-.+...++.++..++
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444443
No 87
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=35.58 E-value=1.6e+02 Score=30.58 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008775 326 QLREATMQLEELQRELNL 343 (554)
Q Consensus 326 ~i~ele~ele~l~~el~~ 343 (554)
++..++.++..++.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 84 RIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 88
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=35.41 E-value=3.1e+02 Score=26.34 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 008775 438 QSLGKQLKSLA 448 (554)
Q Consensus 438 ~~L~~ql~~L~ 448 (554)
..+...+..+.
T Consensus 275 ~~l~~~i~~id 285 (312)
T 3abh_A 275 HDLEQSIRAAD 285 (312)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhCC
Confidence 33444444443
No 89
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=35.17 E-value=1.1e+02 Score=28.25 Aligned_cols=111 Identities=10% Similarity=0.133 Sum_probs=34.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008775 349 RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITV-KCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAA 427 (554)
Q Consensus 349 ~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~-kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~ 427 (554)
..++.+|..++.+-..+..+++..+..++........+++ ...++...+..+.++.+. +-.+......=+++...+.
T Consensus 38 e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~~~~se~--~T~imEs~p~DeeEa~kLl 115 (267)
T 3tkl_B 38 EELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEK--LTQLMEKHKGDEKTVQSLQ 115 (267)
T ss_dssp -------------------------------------CCCCCHHHHHHHHHHHHHHHHH--HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHH--HHHHHhcCcccHHHHHHHH
Confidence 3455555556666666666666666666555444422111 112222222222221100 0001111111123556667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhcccCCcc
Q 008775 428 GKLAECQKTIQSLGKQLKSLATLEDFLIDTASIP 461 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~ 461 (554)
.+-..|...+.+|+--..-.....-||...|.+.
T Consensus 116 hKh~~~~~KlaNLQdl~dvh~geKsFfNakG~pV 149 (267)
T 3tkl_B 116 REHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPV 149 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEECTTSCBC
T ss_pred HHhcccchhhhhHHHHHHHHhhhhhhhccCCCCC
Confidence 7778888888888875555555667776666644
No 90
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.42 E-value=98 Score=20.03 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 294 KLEEKIEKMEAEKAELEMALAKSQ 317 (554)
Q Consensus 294 ~Le~ele~le~eleele~el~~l~ 317 (554)
+|+.+.+++-.....++.++..+.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444444444444444444433
No 91
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=32.80 E-value=1e+02 Score=26.03 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 363 QTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401 (554)
Q Consensus 363 ~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~ 401 (554)
..+.-+...++..+..++....+-..++..|+.....+-
T Consensus 58 d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~Lf 96 (130)
T 3cl3_D 58 DQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLF 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555444444444444444444433
No 92
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.19 E-value=97 Score=22.01 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKL 257 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l 257 (554)
.+++.|+.++.+|+.++..+..++.++..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655555444
No 93
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.16 E-value=75 Score=19.41 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=7.7
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 008775 33 EKLEFLEKENSALKMELLI 51 (554)
Q Consensus 33 ~rl~~~eke~~~l~~el~~ 51 (554)
..+..+.+++..++.++..
T Consensus 9 qeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 94
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=31.51 E-value=4.2e+02 Score=26.67 Aligned_cols=8 Identities=25% Similarity=0.879 Sum_probs=0.0
Q ss_pred cCCcCCcc
Q 008775 471 PKTVGESW 478 (554)
Q Consensus 471 ~~~~~~~~ 478 (554)
+..-...|
T Consensus 296 ~~~~~~~W 303 (373)
T 3hhm_B 296 PHHDEKTW 303 (373)
T ss_dssp --------
T ss_pred ccccCCCC
Confidence 33444556
No 95
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.46 E-value=4.7e+02 Score=27.30 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008775 424 EVAAGKLAECQKTIQSL 440 (554)
Q Consensus 424 ~~a~~kl~e~q~tI~~L 440 (554)
+.....++..++.++.+
T Consensus 90 ~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 90 KAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 96
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.37 E-value=1.2e+02 Score=20.20 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 008775 329 EATMQLEELQ 338 (554)
Q Consensus 329 ele~ele~l~ 338 (554)
-+++++..++
T Consensus 35 ylekeianlr 44 (49)
T 3he5_A 35 YLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 97
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=30.75 E-value=2.2e+02 Score=23.32 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=18.9
Q ss_pred hcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 008775 65 LSNQAAETASKQHLDSIKKVAKLEAECRRLKAM 97 (554)
Q Consensus 65 ~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~ 97 (554)
....+++.+.++.-=--.|+...|.-||.....
T Consensus 29 eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 29 QYKGTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444456777888888876544
No 98
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=30.32 E-value=2.3e+02 Score=23.33 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008775 420 QEDLEVAAGKLAECQKTIQSLG 441 (554)
Q Consensus 420 qeel~~a~~kl~e~q~tI~~L~ 441 (554)
+..+..+..|+++++..++..-
T Consensus 68 ~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 68 EGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444433
No 99
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.96 E-value=5.7e+02 Score=27.43 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 008775 254 EEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLRE-ATM 332 (554)
Q Consensus 254 e~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~e-le~ 332 (554)
..-++........+...|-.....+.+.+..+..-..+...++.+.+.++....+++..+..-+....+.-.++.+ ++.
T Consensus 458 ~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~ 537 (592)
T 1f5n_A 458 EEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 537 (592)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHH
Q 008775 333 QLEELQRELNLVNESKRIVESNVSS--MEMEAQTMTAKINSLEEE 375 (554)
Q Consensus 333 ele~l~~el~~l~~~~~~le~~L~~--le~ei~~l~~~i~~Le~e 375 (554)
+...+..+.+.+-+.+-.-+..+-. .+.+...++.+|..|+..
T Consensus 538 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 538 DRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 100
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.45 E-value=1.8e+02 Score=29.81 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008775 325 LQLREATMQLEELQRELN 342 (554)
Q Consensus 325 ~~i~ele~ele~l~~el~ 342 (554)
.++..++.++..++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 78 EEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 101
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=28.34 E-value=96 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008775 327 LREATMQLEELQRELNLV 344 (554)
Q Consensus 327 i~ele~ele~l~~el~~l 344 (554)
|.++....++++..++.+
T Consensus 27 ieelkkkweelkkkieel 44 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444433
No 102
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.29 E-value=3.4e+02 Score=28.46 Aligned_cols=32 Identities=3% Similarity=-0.147 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 242 KLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ 273 (554)
Q Consensus 242 ~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~ 273 (554)
++-.+..+...+..+++.++.+.+.+.++|..
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555543
No 103
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=27.66 E-value=1.6e+02 Score=20.53 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008775 67 NQAAETASKQHLDSIKKVAKLEAECRRLKAMACR 100 (554)
Q Consensus 67 ~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k 100 (554)
.+..+.+.....+.+..+.++|-+..||+++++.
T Consensus 10 Ke~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 10 KQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3344455566667777888999899999987764
No 104
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.05 E-value=2.7e+02 Score=23.15 Aligned_cols=34 Identities=6% Similarity=0.251 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA 262 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~ 262 (554)
++.+...+..+...+..+..++..+...+.++..
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~ 36 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555444444444444444443333
No 105
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.26 E-value=1e+02 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=17.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008775 73 ASKQHLDSIKKVAKLEAECRRLKAMACR 100 (554)
Q Consensus 73 ~~~q~~e~~~ki~kLEae~q~lr~~~~k 100 (554)
|..+......+|..|..+.+.|+.++..
T Consensus 48 Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 48 LTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666777777777776654
No 106
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.16 E-value=1.1e+02 Score=18.38 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008775 35 LEFLEKENSALKMELLIQSEELEIRA 60 (554)
Q Consensus 35 l~~~eke~~~l~~el~~l~~el~~~~ 60 (554)
.+.+++....+...++.|.+.++.++
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888887776543
No 107
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=26.09 E-value=3.6e+02 Score=25.99 Aligned_cols=111 Identities=10% Similarity=0.131 Sum_probs=56.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008775 349 RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITV-KCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAA 427 (554)
Q Consensus 349 ~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~-kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~ 427 (554)
..++.+|..++.+-..+..+++..+..++........+++ ...++...++.+.++.+. +-.+......=+++...+.
T Consensus 21 e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l~~~~e~--~T~imEs~p~DeeEa~kLl 98 (384)
T 3tnf_B 21 EELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEK--LTQLMEKHKGDEKTVQSLQ 98 (384)
T ss_dssp THHHHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHHHHHHHH--HHHHHTTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHH--HHHHHhcCcccHHHHHHHH
Confidence 3455666666666666667777776666655444422110 112222222222221100 0000000111123456667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhcccCCcc
Q 008775 428 GKLAECQKTIQSLGKQLKSLATLEDFLIDTASIP 461 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~ 461 (554)
.+-..|...+.+|+--..-+....-||...|.+.
T Consensus 99 hKh~~~~~KlaNLQdl~dvh~geKsFfNekG~pV 132 (384)
T 3tnf_B 99 REHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPV 132 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCEEECTTSSEE
T ss_pred HhhcccchhhhhHHHHHHHHhhhhhhhccCCCCc
Confidence 7778888888888875555555666776666543
No 108
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.25 E-value=3.2e+02 Score=23.37 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--------------------------------
Q 008775 232 MIHRTAELEQKLERMDAEKVDLEEKLDKM---DAEKAELEEKLEQMDA-------------------------------- 276 (554)
Q Consensus 232 l~~el~eLe~~l~~le~ei~eLe~~l~~l---~~e~~~l~~~ie~l~~-------------------------------- 276 (554)
+..++..+...+..+...+..+...++.+ ...+.++...++.+..
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~l 86 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSV 86 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEe
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 277 ------------EKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQD 318 (554)
Q Consensus 277 ------------el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~ 318 (554)
-+..++..+..+...+..++..+..+...+..++..+..+..
T Consensus 87 G~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 87 GSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 109
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=25.05 E-value=2.2e+02 Score=23.32 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 232 MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ 273 (554)
Q Consensus 232 l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~ 273 (554)
|++...+|-..|..++.+.-.++..+.....++++|..++.+
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQ 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Confidence 334444555555555555555555555555555555554443
No 110
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.02 E-value=1.9e+02 Score=23.68 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 236 TAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL 271 (554)
Q Consensus 236 l~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~i 271 (554)
..+|-..|..++.+.-.++..+.....++++|...+
T Consensus 51 ~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 51 AKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRI 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Confidence 333334444444444444444444444444443333
No 111
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.44 E-value=1.1e+02 Score=23.67 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008775 31 LFEKLEFLEKENSALKMELLIQSEELEI 58 (554)
Q Consensus 31 l~~rl~~~eke~~~l~~el~~l~~el~~ 58 (554)
+..+...++.++..|..+|..|.+++..
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666665555555543
No 112
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.66 E-value=80 Score=18.58 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 008775 31 LFEKLEFLEKENSALKMELLIQ 52 (554)
Q Consensus 31 l~~rl~~~eke~~~l~~el~~l 52 (554)
|..+-..+..++..+.|++..|
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 3344445556666666666544
No 113
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.49 E-value=3.7e+02 Score=23.39 Aligned_cols=6 Identities=0% Similarity=-0.036 Sum_probs=0.0
Q ss_pred ccCCCc
Q 008775 214 VTTQST 219 (554)
Q Consensus 214 ~tGG~~ 219 (554)
++||.+
T Consensus 16 ~~~~~p 21 (152)
T 4fla_A 16 FQGAGP 21 (152)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 444443
No 114
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=23.44 E-value=6.5e+02 Score=26.29 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 296 EEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344 (554)
Q Consensus 296 e~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l 344 (554)
+++++++..++...+..++..++.+.....-+..+...|+.....+..+
T Consensus 320 er~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~ 368 (551)
T 2b5u_A 320 ERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADA 368 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHH
Confidence 3334444444444444444444333333233333333333333333333
No 115
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.21 E-value=6.4e+02 Score=25.71 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=8.4
Q ss_pred ccCCCCcccc-CCCCC
Q 008775 479 KLPSNVTFSH-KRDLN 493 (554)
Q Consensus 479 ~~~~~~~~~~-~~~~~ 493 (554)
..|.+-.|+- -||-+
T Consensus 305 ~~h~g~~FST~DrDND 320 (411)
T 3ghg_C 305 TSHNGMQFSTWDNDND 320 (411)
T ss_dssp SCCTTCCCEETTBCCS
T ss_pred cccCCCeecCCCCCCC
Confidence 5677766654 34443
No 116
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.86 E-value=3.1e+02 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008775 420 QEDLEVAAGKLAECQKTIQSLGK 442 (554)
Q Consensus 420 qeel~~a~~kl~e~q~tI~~L~~ 442 (554)
+..+..+..|+++++..++.+-.
T Consensus 51 ~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 51 RAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555555565555555555443
No 117
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.53 E-value=1.6e+02 Score=18.63 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008775 294 KLEEKIEKMEAEKAELEMALAKS 316 (554)
Q Consensus 294 ~Le~ele~le~eleele~el~~l 316 (554)
+|+.+++++-.....++.++..+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444443
No 118
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.50 E-value=1.7e+02 Score=18.69 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008775 294 KLEEKIEKMEAEKAELEMALAKS 316 (554)
Q Consensus 294 ~Le~ele~le~eleele~el~~l 316 (554)
+|+.+++++-.+...++.++..+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444444444444444444433
No 119
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.66 E-value=2.9e+02 Score=21.23 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008775 421 EDLEVAAGKLAECQKTIQSL 440 (554)
Q Consensus 421 eel~~a~~kl~e~q~tI~~L 440 (554)
..+..+..|+.+++..++.+
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443
No 120
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.17 E-value=3.3e+02 Score=21.68 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008775 316 SQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMER 380 (554)
Q Consensus 316 l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~ 380 (554)
++.++.....-+...+.........+..+..++..-..+-......+.+++.+|..|...+.+..
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Done!