Query 008776
Match_columns 554
No_of_seqs 176 out of 322
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 11:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.4E-40 4.8E-45 285.8 0.7 87 166-252 5-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 2.2E-39 7.4E-44 275.7 -0.6 82 169-250 3-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.6E-30 5.6E-35 207.8 2.3 59 168-226 2-60 (60)
4 2d8r_A THAP domain-containing 19.2 44 0.0015 27.8 1.7 13 169-181 9-21 (99)
5 1vk6_A NADH pyrophosphatase; 1 17.7 34 0.0012 33.3 0.8 35 185-220 101-135 (269)
6 2lau_A THAP domain-containing 15.3 67 0.0023 25.5 1.8 11 169-179 4-14 (81)
7 3dzy_D Peroxisome proliferator 11.6 53 0.0018 33.8 0.2 23 169-191 50-80 (419)
8 4a6q_A Histone deacetylase com 11.0 50 0.0017 30.5 -0.2 28 188-226 20-47 (143)
9 1gh9_A 8.3 kDa protein (gene M 9.4 1.1E+02 0.0037 25.0 1.3 27 193-222 6-32 (71)
10 2dt7_A Splicing factor 3A subu 8.5 47 0.0016 24.3 -1.1 11 181-191 19-29 (38)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.4e-40 Score=285.81 Aligned_cols=87 Identities=60% Similarity=1.027 Sum_probs=80.3
Q ss_pred CCCCCCcccCCCchhccCChhhhccccchhhhcCCCeEEECCccchhhhhhhccccccccccccchHHHHHhhHHhhhcC
Q 008776 166 SSHTAYCQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRK 245 (554)
Q Consensus 166 ~~~~~~CQVdGC~~dLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~hn~RRRk 245 (554)
.++.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||
T Consensus 5 ~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk 84 (94)
T 1ul4_A 5 SSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 84 (94)
T ss_dssp ---CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCS
T ss_pred CCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 008776 246 PQVGVHP 252 (554)
Q Consensus 246 ~q~~~~~ 252 (554)
+++++.+
T Consensus 85 ~~~~~~~ 91 (94)
T 1ul4_A 85 SSGESGP 91 (94)
T ss_dssp CCCC---
T ss_pred CCCCcCC
Confidence 9998653
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2.2e-39 Score=275.68 Aligned_cols=82 Identities=48% Similarity=0.951 Sum_probs=78.8
Q ss_pred CCCcccCCCchhccCChhhhccccchhhhcCCCeEEECCccchhhhhhhccccccccccccchHHHHHhhHHhhhcCCCC
Q 008776 169 TAYCQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRKPQV 248 (554)
Q Consensus 169 ~~~CQVdGC~~dLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~hn~RRRk~q~ 248 (554)
.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||++.
T Consensus 3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~ 82 (88)
T 1ul5_A 3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV 82 (88)
T ss_dssp CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CC
Q 008776 249 GV 250 (554)
Q Consensus 249 ~~ 250 (554)
+.
T Consensus 83 ~~ 84 (88)
T 1ul5_A 83 DK 84 (88)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=1.6e-30 Score=207.81 Aligned_cols=59 Identities=64% Similarity=1.123 Sum_probs=57.1
Q ss_pred CCCCcccCCCchhccCChhhhccccchhhhcCCCeEEECCccchhhhhhhccccccccc
Q 008776 168 HTAYCQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFD 226 (554)
Q Consensus 168 ~~~~CQVdGC~~dLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 226 (554)
+.++|||+||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46789999999999999999999999999999999999999999999999999999998
No 4
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=19.23 E-value=44 Score=27.85 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=9.4
Q ss_pred CCCcccCCCchhc
Q 008776 169 TAYCQVYGCNKDL 181 (554)
Q Consensus 169 ~~~CQVdGC~~dL 181 (554)
+..|-|.||...-
T Consensus 9 ~~~C~v~gC~n~~ 21 (99)
T 2d8r_A 9 PTNCAAAGCATTY 21 (99)
T ss_dssp CCCCCSSSCCCSC
T ss_pred CCeeEeCCCCCCC
Confidence 4469999998643
No 5
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=17.75 E-value=34 Score=33.26 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=27.2
Q ss_pred hhhhccccchhhhcCCCeEEECCccchhhhhhhccc
Q 008776 185 KDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFH 220 (554)
Q Consensus 185 k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH 220 (554)
..++++++-|..+- ++.+..++...+.|..|+..|
T Consensus 101 ~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 101 AEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 45888999998865 455667888899999997644
No 6
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=15.32 E-value=67 Score=25.48 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=7.3
Q ss_pred CCCcccCCCch
Q 008776 169 TAYCQVYGCNK 179 (554)
Q Consensus 169 ~~~CQVdGC~~ 179 (554)
...|-|.||..
T Consensus 4 G~~C~v~gC~n 14 (81)
T 2lau_A 4 GFTCCVPGCYN 14 (81)
T ss_dssp CCSCCCSSSSS
T ss_pred CCEEEeCCCcC
Confidence 34588888864
No 7
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=11.57 E-value=53 Score=33.81 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=12.9
Q ss_pred CCCcccCCCch--------hccCChhhhccc
Q 008776 169 TAYCQVYGCNK--------DLSSSKDYHKRH 191 (554)
Q Consensus 169 ~~~CQVdGC~~--------dLs~~k~Y~rRh 191 (554)
...|.|.|=.+ ....+|.||||.
T Consensus 50 ~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~ 80 (419)
T 3dzy_D 50 AIECRVCGDKASGFHYGVHACEGCKGFFRRT 80 (419)
T ss_dssp CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHH
T ss_pred CCcCeECCCcCCCCccCcccchhhhHHHccc
Confidence 44588854221 133467788875
No 8
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=10.97 E-value=50 Score=30.50 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=23.1
Q ss_pred hccccchhhhcCCCeEEECCccchhhhhhhccccccccc
Q 008776 188 HKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFD 226 (554)
Q Consensus 188 ~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 226 (554)
--|.++|+.+.+ -||.+=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 458899998765 3887768999999997
No 9
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=9.42 E-value=1.1e+02 Score=25.02 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred chhhhcCCCeEEECCccchhhhhhhccccc
Q 008776 193 VCEAHSKAAKVIVNEIEQRFCQQCSRFHFL 222 (554)
Q Consensus 193 VCe~H~kA~~V~v~G~~qRFCQQCsrFH~L 222 (554)
.|+ ..+..++-+|....-|+ ||+-|.+
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeee
Confidence 476 55667888899999998 9985544
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.52 E-value=47 Score=24.26 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=6.1
Q ss_pred ccCChhhhccc
Q 008776 181 LSSSKDYHKRH 191 (554)
Q Consensus 181 Ls~~k~Y~rRh 191 (554)
|...|+||+||
T Consensus 19 lk~Ike~Hrr~ 29 (38)
T 2dt7_A 19 LKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhC
Confidence 44455666665
Done!