Query 008777
Match_columns 554
No_of_seqs 444 out of 2810
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 16:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 6.9E-65 1.5E-69 558.9 32.9 380 114-520 12-476 (571)
2 PHA02713 hypothetical protein; 100.0 8.1E-58 1.8E-62 504.3 30.0 372 118-521 5-465 (557)
3 PHA02790 Kelch-like protein; P 100.0 8.1E-53 1.8E-57 457.9 30.6 355 127-521 11-448 (480)
4 PHA03098 kelch-like protein; P 100.0 1.1E-50 2.4E-55 448.1 28.5 354 140-519 6-437 (534)
5 KOG4350 Uncharacterized conser 100.0 3.1E-31 6.7E-36 265.0 11.4 220 142-380 43-266 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 6.3E-24 1.4E-28 218.1 12.5 212 142-364 113-340 (521)
7 KOG4682 Uncharacterized conser 99.8 2.4E-18 5.2E-23 173.3 11.6 176 140-323 66-246 (488)
8 PF07707 BACK: BTB And C-termi 99.7 2.5E-18 5.3E-23 147.8 4.4 103 248-359 1-103 (103)
9 PF00651 BTB: BTB/POZ domain; 99.7 5E-17 1.1E-21 141.3 8.5 97 141-240 8-109 (111)
10 KOG4591 Uncharacterized conser 99.7 1.4E-16 3E-21 146.8 8.3 171 120-307 48-224 (280)
11 smart00875 BACK BTB And C-term 99.6 6.8E-16 1.5E-20 131.6 9.3 99 248-356 1-99 (101)
12 KOG4441 Proteins containing BT 99.6 1.6E-14 3.4E-19 160.1 14.5 95 421-521 300-429 (571)
13 smart00225 BTB Broad-Complex, 99.6 5E-15 1.1E-19 122.3 7.8 88 145-235 1-90 (90)
14 KOG0783 Uncharacterized conser 99.5 1.6E-14 3.4E-19 156.2 6.1 140 138-284 707-852 (1267)
15 PHA02713 hypothetical protein; 99.4 8.5E-12 1.8E-16 138.6 17.1 237 242-521 90-400 (557)
16 PHA02790 Kelch-like protein; P 99.2 5.7E-10 1.2E-14 122.1 16.5 89 422-521 287-409 (480)
17 PHA03098 kelch-like protein; P 98.9 1.9E-08 4.1E-13 111.6 15.7 236 242-519 72-389 (534)
18 TIGR03547 muta_rot_YjhT mutatr 98.5 3.4E-07 7.4E-12 95.9 9.2 94 422-521 168-323 (346)
19 TIGR03547 muta_rot_YjhT mutatr 98.5 3.5E-07 7.6E-12 95.8 8.9 62 404-473 19-91 (346)
20 TIGR03548 mutarot_permut cycli 98.5 4.6E-07 1E-11 94.1 9.5 108 404-521 125-305 (323)
21 PLN02153 epithiospecifier prot 98.4 1E-06 2.2E-11 92.3 10.9 107 404-520 87-252 (341)
22 PLN02193 nitrile-specifier pro 98.4 1E-06 2.2E-11 96.3 11.2 106 404-520 230-378 (470)
23 PLN02153 epithiospecifier prot 98.4 1.3E-06 2.8E-11 91.5 10.5 110 404-521 34-195 (341)
24 PF13964 Kelch_6: Kelch motif 98.4 4E-07 8.7E-12 67.4 4.7 47 441-510 1-50 (50)
25 PLN02193 nitrile-specifier pro 98.3 3.6E-06 7.8E-11 92.0 10.7 109 404-520 177-329 (470)
26 TIGR03548 mutarot_permut cycli 98.2 3.9E-06 8.4E-11 87.1 9.6 81 433-519 52-171 (323)
27 PF01344 Kelch_1: Kelch motif; 98.2 9.1E-07 2E-11 64.4 3.2 44 441-507 1-47 (47)
28 PRK14131 N-acetylneuraminic ac 98.1 4.8E-06 1E-10 88.4 7.2 94 422-521 189-345 (376)
29 KOG0783 Uncharacterized conser 98.1 8.4E-06 1.8E-10 89.8 8.4 97 140-236 555-683 (1267)
30 PRK14131 N-acetylneuraminic ac 98.1 9.5E-06 2.1E-10 86.2 8.6 51 423-473 51-112 (376)
31 KOG0511 Ankyrin repeat protein 98.0 4.4E-06 9.6E-11 84.8 4.5 135 151-292 301-442 (516)
32 KOG1987 Speckle-type POZ prote 97.8 1.2E-05 2.7E-10 82.3 2.3 126 151-284 110-240 (297)
33 KOG2838 Uncharacterized conser 97.7 1.3E-05 2.8E-10 78.2 0.8 99 152-252 262-397 (401)
34 KOG2838 Uncharacterized conser 97.6 6.4E-05 1.4E-09 73.5 4.6 102 122-226 114-217 (401)
35 PF07646 Kelch_2: Kelch motif; 97.5 0.00017 3.6E-09 53.1 4.5 46 441-507 1-49 (49)
36 smart00612 Kelch Kelch domain. 97.4 0.00013 2.7E-09 52.4 2.9 27 494-520 18-47 (47)
37 KOG2716 Polymerase delta-inter 97.2 0.0011 2.4E-08 64.6 8.1 92 146-240 7-103 (230)
38 PF02214 BTB_2: BTB/POZ domain 97.2 0.00073 1.6E-08 56.9 5.8 86 146-234 1-94 (94)
39 KOG0379 Kelch repeat-containin 97.1 0.0018 3.9E-08 71.1 9.2 105 404-519 124-275 (482)
40 PF11822 DUF3342: Domain of un 97.0 0.00094 2E-08 67.8 5.6 88 151-240 14-102 (317)
41 KOG3473 RNA polymerase II tran 96.6 0.0037 8E-08 51.9 5.0 71 152-226 28-111 (112)
42 KOG4693 Uncharacterized conser 96.6 0.0037 8.1E-08 61.4 5.6 77 421-521 215-304 (392)
43 PF13418 Kelch_4: Galactose ox 96.5 0.0018 3.9E-08 47.4 2.3 45 441-508 1-49 (49)
44 KOG0379 Kelch repeat-containin 96.3 0.013 2.9E-07 64.3 8.9 93 423-521 89-226 (482)
45 PF13415 Kelch_3: Galactose ox 96.2 0.0059 1.3E-07 44.7 3.8 46 451-518 1-49 (49)
46 PF13854 Kelch_5: Kelch motif 95.9 0.015 3.2E-07 41.2 4.6 36 439-474 2-39 (42)
47 smart00512 Skp1 Found in Skp1 95.6 0.028 6E-07 48.3 5.9 73 151-227 12-104 (104)
48 smart00612 Kelch Kelch domain. 94.6 0.052 1.1E-06 38.5 3.9 32 421-452 14-47 (47)
49 KOG4693 Uncharacterized conser 94.6 0.085 1.8E-06 52.2 6.4 83 434-521 4-141 (392)
50 KOG1665 AFH1-interacting prote 94.4 0.082 1.8E-06 50.8 5.7 69 166-237 35-106 (302)
51 KOG1724 SCF ubiquitin ligase, 93.5 0.099 2.2E-06 48.6 4.4 87 151-240 15-125 (162)
52 KOG4152 Host cell transcriptio 92.2 0.44 9.5E-06 51.2 7.5 34 429-462 115-157 (830)
53 KOG2714 SETA binding protein S 92.1 0.34 7.5E-06 51.0 6.5 90 146-239 13-112 (465)
54 KOG1230 Protein containing rep 91.8 0.31 6.7E-06 51.1 5.7 86 423-514 99-236 (521)
55 PF03931 Skp1_POZ: Skp1 family 90.6 1.4 3E-05 34.0 7.1 54 146-204 3-59 (62)
56 COG3055 Uncharacterized protei 89.0 0.77 1.7E-05 47.5 5.8 77 422-518 58-142 (381)
57 cd03779 MATH_TRAF1 Tumor Necro 88.9 0.16 3.4E-06 46.6 0.6 32 64-95 115-146 (147)
58 KOG1778 CREB binding protein/P 88.8 0.31 6.8E-06 50.2 2.9 132 151-290 36-168 (319)
59 KOG4152 Host cell transcriptio 88.7 0.79 1.7E-05 49.3 5.7 35 426-460 234-273 (830)
60 KOG0511 Ankyrin repeat protein 88.4 0.15 3.2E-06 52.7 0.2 89 138-231 144-235 (516)
61 PF13964 Kelch_6: Kelch motif 87.6 0.8 1.7E-05 33.3 3.7 34 403-439 12-45 (50)
62 PF01466 Skp1: Skp1 family, di 87.3 0.4 8.7E-06 38.9 2.1 36 213-249 14-49 (78)
63 KOG1230 Protein containing rep 87.2 0.87 1.9E-05 47.9 4.8 41 422-462 207-253 (521)
64 COG5201 SKP1 SCF ubiquitin lig 86.6 1.8 4E-05 38.1 5.8 89 151-245 12-124 (158)
65 cd03781 MATH_TRAF4 Tumor Necro 85.1 0.34 7.5E-06 44.7 0.7 31 63-95 123-153 (154)
66 PF13415 Kelch_3: Galactose ox 84.6 1.7 3.7E-05 31.5 4.1 44 404-449 3-48 (49)
67 cd03774 MATH_SPOP Speckle-type 84.3 0.33 7.2E-06 43.7 0.2 37 63-99 102-138 (139)
68 cd03776 MATH_TRAF6 Tumor Necro 82.9 0.36 7.9E-06 44.0 -0.1 31 63-95 116-146 (147)
69 PF11822 DUF3342: Domain of un 79.9 0.97 2.1E-05 46.3 1.7 61 242-306 71-134 (317)
70 PF01344 Kelch_1: Kelch motif; 77.3 2.2 4.9E-05 30.2 2.5 33 404-439 13-45 (47)
71 PF03089 RAG2: Recombination a 75.8 8.6 0.00019 38.8 6.9 88 440-530 153-286 (337)
72 cd03780 MATH_TRAF5 Tumor Necro 71.4 1.6 3.4E-05 40.1 0.6 32 64-95 116-147 (148)
73 cd03773 MATH_TRIM37 Tripartite 67.0 2.7 5.9E-05 37.2 1.1 31 63-95 97-129 (132)
74 PLN02772 guanylate kinase 66.2 10 0.00022 40.4 5.4 62 440-524 23-90 (398)
75 cd03777 MATH_TRAF3 Tumor Necro 66.0 4.3 9.2E-05 38.8 2.3 30 64-95 154-183 (186)
76 cd00270 MATH_TRAF_C Tumor Necr 65.4 1.9 4.2E-05 39.1 -0.2 32 62-95 117-148 (149)
77 cd03772 MATH_HAUSP Herpesvirus 61.3 3.3 7.2E-05 37.1 0.6 36 62-97 97-132 (137)
78 KOG2715 Uncharacterized conser 61.2 29 0.00063 32.3 6.5 98 140-240 17-120 (210)
79 KOG4350 Uncharacterized conser 56.8 13 0.00028 39.3 4.0 113 213-357 148-261 (620)
80 COG3055 Uncharacterized protei 56.6 11 0.00023 39.4 3.3 40 422-461 113-156 (381)
81 PF07707 BACK: BTB And C-termi 55.4 19 0.00041 29.9 4.3 82 216-301 2-102 (103)
82 PLN02772 guanylate kinase 51.8 26 0.00057 37.4 5.4 55 403-460 35-95 (398)
83 KOG2723 Uncharacterized conser 49.8 46 0.00099 32.6 6.3 89 148-239 13-107 (221)
84 PF07646 Kelch_2: Kelch motif; 48.7 28 0.00061 24.9 3.7 35 404-439 13-47 (49)
85 KOG3840 Uncharaterized conserv 43.6 24 0.00052 35.9 3.4 83 145-228 97-185 (438)
86 PF07250 Glyoxal_oxid_N: Glyox 40.4 24 0.00052 35.1 2.9 37 417-461 51-87 (243)
87 PF00651 BTB: BTB/POZ domain; 34.0 39 0.00085 28.2 2.9 32 243-278 78-110 (111)
88 KOG2075 Topoisomerase TOP1-int 33.8 75 0.0016 34.6 5.4 45 242-294 184-228 (521)
89 cd03775 MATH_Ubp21p Ubiquitin- 33.2 21 0.00046 31.7 1.1 33 62-94 96-132 (134)
90 PHA02629 A-type inclusion body 31.5 37 0.0008 24.9 1.9 21 49-69 14-34 (61)
91 smart00875 BACK BTB And C-term 29.3 1.2E+02 0.0025 24.6 5.0 25 216-240 2-26 (101)
92 KOG2437 Muskelin [Signal trans 24.0 86 0.0019 34.4 3.8 22 439-460 371-394 (723)
93 cd00121 MATH MATH (meprin and 23.8 60 0.0013 27.3 2.3 33 61-95 93-125 (126)
94 PF13799 DUF4183: Domain of un 23.8 47 0.001 27.4 1.5 43 509-551 5-60 (84)
95 cd03772 MATH_HAUSP Herpesvirus 21.7 45 0.00098 29.6 1.1 28 526-553 106-133 (137)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.9e-65 Score=558.91 Aligned_cols=380 Identities=19% Similarity=0.307 Sum_probs=353.0
Q ss_pred ccccCCcchhhhHHHHHHHhcCCCCCCCcceeEEEEE--EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCC
Q 008777 114 MVEESPADVGLNLKQCEEATGNIDPAWSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASE 191 (554)
Q Consensus 114 ~v~~~p~~~~~~l~~L~~~r~~~~~~~~~~~DV~l~v--~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~ 191 (554)
.....+.|...+++.|+.+|+ .+.+|||++.+ ++|+|||+||||+||||++||+++++|+.+++|.|. +++
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~-----~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~ 84 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELRE-----EGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVD 84 (571)
T ss_pred cccccHHHHHHHHHHHHHHHH-----hCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCC
Confidence 445678899999999999998 77899999999 589999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHhcCceecCchhhHHHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHH
Q 008777 192 EAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTA 271 (554)
Q Consensus 192 ~~~f~~lL~fiYtg~l~i~~~~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~ 271 (554)
+.+++.+|+|+||+++.++. +||++||.+|++|||+.+++.|++||++ +++++||+.+..+|+.| +|.+|.+.+
T Consensus 85 ~~~l~~ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a 158 (571)
T KOG4441|consen 85 PETLELLLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVA 158 (571)
T ss_pred HHHHHHHHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999 99999999999999999 999999999
Q ss_pred HHHHHHhhHhhhccchhhcCCChhhhhcccccCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhhcCCCCCCCCH
Q 008777 272 KQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTC 351 (554)
Q Consensus 272 ~~fi~~nf~~v~~~~~~fl~L~~~~l~~LL~sd~L~V~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~IRf~lls~ 351 (554)
..||.+||.++.+ +++|++||.+++..||++|+|+|.+|++||+++++|++|| .+.|+.++ +.|+++||||+|++
T Consensus 159 ~~~i~~~F~~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~ 233 (571)
T KOG4441|consen 159 DEYILQHFAEVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPP 233 (571)
T ss_pred HHHHHHHHHHHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCH
Confidence 9999999999999 9999999999999999999999999999999999999999 78899998 89999999999999
Q ss_pred HHHhhhcccCCCC--ChHHHHHHHHHHhhhccCcccchhhcccccccccc-cceeceeeecc-------ccccccccccc
Q 008777 352 RKLKKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYR-RFVERAYKYRP-------VKVVEFELPRQ 421 (554)
Q Consensus 352 ~~L~~~v~~~~l~--~~~~~~~l~eAl~~~~~~~~~q~~~~~~~t~~~pR-~~~~~~~~~~~-------~~~Ve~ydp~~ 421 (554)
.+|.+.+...+++ .+.|++++.+|++||. .|.+++.+++++++ || ...+.+++.|+ .+.+|+|||.+
T Consensus 234 ~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~-~~~~~~~~~~~~t~--~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~ 310 (571)
T KOG4441|consen 234 QFLVEIVESEPLIKRDSACRDLLDEAKKYHL-LPQRRPVMQSPRTR--PRRSVSGKLVAVGGYNRQGQSLRSVECYDPKT 310 (571)
T ss_pred HHHHHHHhhhhhhccCHHHHHHHHHHHHHhh-CcccCccccCCCcc--cCcCCCCeEEEECCCCCCCcccceeEEecCCc
Confidence 9999999988875 6899999999999999 88888888898887 46 34456666444 35789999999
Q ss_pred ceeE--------------------------------------eeecCcCceeeccC--CCceeEEEEEECCcEEEEcccC
Q 008777 422 QCVV--------------------------------------YLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHC 461 (554)
Q Consensus 422 ~~w~--------------------------------------~~d~~~~~W~~l~p--~~r~~~~~~vl~g~lYviGG~~ 461 (554)
+.|. +|||..++|+.++| .+|..+++++++|.||++||++
T Consensus 311 ~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d 390 (571)
T KOG4441|consen 311 NEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD 390 (571)
T ss_pred CcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccc
Confidence 9998 39999999999998 9999999999999999999999
Q ss_pred CCcccceEEEEE-----------------------------eeecccCCC-ccccccccccceeecc---CceeecCCCC
Q 008777 462 NMDQQSSFHCFG-----------------------------LFLGMQEKG-SVSFAVDYEFAARIKP---TEEYVSKYKG 508 (554)
Q Consensus 462 ~~~~~rs~~~y~-----------------------------~~gG~~~~~-~l~s~V~~~~~E~YdP---~W~~va~m~~ 508 (554)
|...++++|||| ++||.++.. .+.++ ||||| +|+.++||+.
T Consensus 391 g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sv------e~YDP~t~~W~~~~~M~~ 464 (571)
T KOG4441|consen 391 GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSV------ECYDPETNTWTLIAPMNT 464 (571)
T ss_pred cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceE------EEEcCCCCceeecCCccc
Confidence 999999999998 467877776 78886 99999 9999999999
Q ss_pred ceeeeceeeecc
Q 008777 509 NYTFTGGKAVGY 520 (554)
Q Consensus 509 ~~~~~g~~~~g~ 520 (554)
+|..+|++++++
T Consensus 465 ~R~~~g~a~~~~ 476 (571)
T KOG4441|consen 465 RRSGFGVAVLNG 476 (571)
T ss_pred ccccceEEEECC
Confidence 999999886554
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-58 Score=504.27 Aligned_cols=372 Identities=13% Similarity=0.161 Sum_probs=304.0
Q ss_pred CCcchhhhHHHHHHHhcCCCCCCCcceeEEEEEE---EEEeehhhccccChHhHHhhcCCCcccC-ccEEEEecCCCCHH
Q 008777 118 SPADVGLNLKQCEEATGNIDPAWSMDLSTVLRVK---TVHISSPILAAKSPFFYKLFSNGMRESE-QRYVTLRIHASEEA 193 (554)
Q Consensus 118 ~p~~~~~~l~~L~~~r~~~~~~~~~~~DV~l~v~---~f~aHr~ILaa~S~yFramf~~~~~Es~-~~~I~L~~~~v~~~ 193 (554)
.+.|...+|+.|+++|+ .+.+|||+|.++ +|+|||+||||+|+||++||+++|+|+. +++|+|+ +++++
T Consensus 5 ~~~h~~~~l~~l~~lr~-----~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~ 77 (557)
T PHA02713 5 DIKHNRRVVSNISNLLD-----DDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKD 77 (557)
T ss_pred hhhhhHHHHHHHHHHHh-----CCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHH
Confidence 45678899999999998 568999999983 7999999999999999999999999875 7889998 99999
Q ss_pred HHHHHHHHHhcCceecCchhhHHHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHH
Q 008777 194 ALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQ 273 (554)
Q Consensus 194 ~f~~lL~fiYtg~l~i~~~~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~ 273 (554)
+|+.+|+|+|||+ ++. +|+++||.||++||++.|++.|++||.+ +|+++||+.++.+|..+ .+..|.++|.+
T Consensus 78 ~~~~ll~y~Yt~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~----~~~~L~~~a~~ 149 (557)
T PHA02713 78 AVKNIVQYLYNRH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEM----SHIPIVKYIKR 149 (557)
T ss_pred HHHHHHHHhcCCC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhc----cchHHHHHHHH
Confidence 9999999999997 567 8999999999999999999999999999 99999999999877777 77789999999
Q ss_pred HHHHhhHhhhccchhhcCCChhhhhcccccCc-cccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhhcCCCCCCCCHH
Q 008777 274 FLAARYKDISKFQEEVLNLPLAGIEAVLASDD-LQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCR 352 (554)
Q Consensus 274 fi~~nf~~v~~~~~~fl~L~~~~l~~LL~sd~-L~V~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~IRf~lls~~ 352 (554)
||.+||.++.+ +++|++|+.++|.+||++|+ |+|.+|++||+|+++|++|| .+.|++ + .+||++||||+|++.
T Consensus 150 ~i~~~f~~v~~-~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~~-~-~~ll~~VR~~~l~~~ 223 (557)
T PHA02713 150 MLMSNIPTLIT-TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITEEQ-L-LCILSCIDIQNLDKK 223 (557)
T ss_pred HHHHHHHHHhC-ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHHHH-H-hhhHhhhhHhhcchh
Confidence 99999999999 99999999999999999988 79999999999999999998 665654 5 599999999999999
Q ss_pred HHhhhcccCCCC--ChHHHHHHHHHHhhhccCcccchhhccc----------------c--------cccccccce----
Q 008777 353 KLKKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAE----------------E--------ANSTYRRFV---- 402 (554)
Q Consensus 353 ~L~~~v~~~~l~--~~~~~~~l~eAl~~~~~~~~~q~~~~~~----------------~--------t~~~pR~~~---- 402 (554)
++. .+.++++. .+.|.+++.+|+.++...| ++..+... . ..+.+|...
T Consensus 224 ~~~-~~~~~~~i~~~~~c~~~l~~a~~~~~~~~-r~~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~ 301 (557)
T PHA02713 224 SRL-LLYSNKTINMYPSCIQFLLDNKQNRNIIP-RQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAI 301 (557)
T ss_pred hhh-hhcchHHHHhhHHHHHHHhhhhhhcccCC-cceEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEE
Confidence 887 44444543 6789999999987654222 21111000 0 001112111
Q ss_pred --eceeeecccccccccccccceeEeeecCcCceeeccC--CCceeEEEEEECCcEEEEcccCCCcccceEEEEE-----
Q 008777 403 --ERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG----- 473 (554)
Q Consensus 403 --~~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p--~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~----- 473 (554)
..+|+.||... .....++.++|||.++.|..++| .+|.++++++++|+||++||.++....+++++||
T Consensus 302 l~~~IYviGG~~~---~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNF---NNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCC---CCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 13455555310 01124556678999999999988 8899999999999999999998766678899998
Q ss_pred ------------------------eeecccCCC------------------ccccccccccceeecc---CceeecCCCC
Q 008777 474 ------------------------LFLGMQEKG------------------SVSFAVDYEFAARIKP---TEEYVSKYKG 508 (554)
Q Consensus 474 ------------------------~~gG~~~~~------------------~l~s~V~~~~~E~YdP---~W~~va~m~~ 508 (554)
++||.++.. .+++ | |+||| +|+.+++|+.
T Consensus 379 W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-----e~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK-V-----IRYDTVNNIWETLPNFWT 452 (557)
T ss_pred EEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccce-E-----EEECCCCCeEeecCCCCc
Confidence 467765421 1345 4 99999 9999999999
Q ss_pred ceeeeceeeeccc
Q 008777 509 NYTFTGGKAVGYR 521 (554)
Q Consensus 509 ~~~~~g~~~~g~~ 521 (554)
+|..+|+++++++
T Consensus 453 ~r~~~~~~~~~~~ 465 (557)
T PHA02713 453 GTIRPGVVSHKDD 465 (557)
T ss_pred ccccCcEEEECCE
Confidence 9999998876654
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.1e-53 Score=457.88 Aligned_cols=355 Identities=14% Similarity=0.114 Sum_probs=266.9
Q ss_pred HHHHHHhcCCCCCCCcceeEEEEE-EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcC
Q 008777 127 KQCEEATGNIDPAWSMDLSTVLRV-KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSS 205 (554)
Q Consensus 127 ~~L~~~r~~~~~~~~~~~DV~l~v-~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg 205 (554)
+++.++|. .+.+|||++.+ ++|+|||+||||+|||||+||+++|+|+.+ +|++...++++++|+.||+|+|||
T Consensus 11 ~~~~~~~~-----~~~~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg 84 (480)
T PHA02790 11 KNILALSM-----TKKFKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTG 84 (480)
T ss_pred hhHHHHHh-----hhhhceEEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheee
Confidence 44566665 56799999998 689999999999999999999999999965 566532389999999999999999
Q ss_pred ceecCchhhHHHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhcc
Q 008777 206 TLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKF 285 (554)
Q Consensus 206 ~l~i~~~~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~ 285 (554)
++.++. +||++||.||++||++.+++.|++||.+ +|+++||+.++.+|+.| +|++|.++|.+||.+||.++.+
T Consensus 85 ~l~it~-~nV~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L~~~a~~fi~~nF~~v~~- 157 (480)
T PHA02790 85 KVYIDS-HNVVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNLLCHTKDFIAKHFLELED- 157 (480)
T ss_pred eEEEec-ccHHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHHHHHHHHHHHHhHHHHhc-
Confidence 999999 9999999999999999999999999999 99999999999999999 9999999999999999999998
Q ss_pred c--hhhcCCChhhhhcccccCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhhcC-CCCCCCCHHHHhhhcccCC
Q 008777 286 Q--EEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRL-IRFPYMTCRKLKKVLTCND 362 (554)
Q Consensus 286 ~--~~fl~L~~~~l~~LL~sd~L~V~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~-IRf~lls~~~L~~~v~~~~ 362 (554)
+ ++|+.||. .+||++|+|+|.+|++||+++++|++|+ .+|...+ .+++++ ||+++|++..+.+
T Consensus 158 ~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir~~~l~~~~l~~------ 223 (480)
T PHA02790 158 DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIRSNYLSPRGINN------ 223 (480)
T ss_pred ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCChhhCCHHHHHH------
Confidence 6 89999996 6799999999999999999999999996 3455555 466666 8999999888753
Q ss_pred CCChHHHHHHHHHHhhhcc-Ccccch-h--h-cccccc-ccc-------ccceeceeeeccc------ccccccccccce
Q 008777 363 FDPELASKVVLESLFFKAE-TPYRQR-A--L-AAEEAN-STY-------RRFVERAYKYRPV------KVVEFELPRQQC 423 (554)
Q Consensus 363 l~~~~~~~~l~eAl~~~~~-~~~~q~-~--~-~~~~t~-~~p-------R~~~~~~~~~~~~------~~Ve~ydp~~~~ 423 (554)
+..++.++..++.. .|.... . . ....+. ..+ ......+|+.|+. +.+++|||.+++
T Consensus 224 -----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~ 298 (480)
T PHA02790 224 -----VKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNN 298 (480)
T ss_pred -----HHHHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCE
Confidence 23344555544431 111100 0 0 000000 000 0011245665542 457778888888
Q ss_pred eE----------------------------------eeecCcCceeeccC--CCceeEEEEEECCcEEEEcccCCCcccc
Q 008777 424 VV----------------------------------YLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQS 467 (554)
Q Consensus 424 w~----------------------------------~~d~~~~~W~~l~p--~~r~~~~~~vl~g~lYviGG~~~~~~~r 467 (554)
|. +|||.+++|..++| .+|.++++++++|+||++||.++. .+
T Consensus 299 W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~ 376 (480)
T PHA02790 299 WIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DT 376 (480)
T ss_pred EEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--Cc
Confidence 77 27777778888777 677778888888888888886543 35
Q ss_pred eEEEEEeeecc-------c----C------CCcc----ccccccccceeecc---CceeecCCCCceeeeceeeeccc
Q 008777 468 SFHCFGLFLGM-------Q----E------KGSV----SFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYR 521 (554)
Q Consensus 468 s~~~y~~~gG~-------~----~------~~~l----~s~V~~~~~E~YdP---~W~~va~m~~~~~~~g~~~~g~~ 521 (554)
++++||+-.+. . + .+.+ ..+ |+||| +|+.+++|+.+|..+|+++++++
T Consensus 377 ~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~------e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~ 448 (480)
T PHA02790 377 TTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNA------EFYCESSNTWTLIDDPIYPRDNPELIIVDNK 448 (480)
T ss_pred cEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCce------EEecCCCCcEeEcCCCCCCccccEEEEECCE
Confidence 67777632111 0 0 0000 022 78888 78888888888888877766654
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.1e-50 Score=448.08 Aligned_cols=354 Identities=12% Similarity=0.168 Sum_probs=287.9
Q ss_pred CCcceeEEEEE----EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCceecCchhhH
Q 008777 140 WSMDLSTVLRV----KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTAL 215 (554)
Q Consensus 140 ~~~~~DV~l~v----~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v 215 (554)
.+.+|||+|.+ ++|+|||+|||++|+||++||+++|+ +.+|.|+ + ++++|+.+|+|||||++.++. +++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHH
Confidence 34689999887 58999999999999999999999998 5679988 7 999999999999999999999 899
Q ss_pred HHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCChh
Q 008777 216 LDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLA 295 (554)
Q Consensus 216 ~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~~ 295 (554)
++||.+|++||++.|+..|++||.+ .++.+||+.++.+|+.| ++..|+++|.+||.+||.++.+ +++|++|+.+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~ 152 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKN 152 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHH
Confidence 9999999999999999999999999 89999999999999999 9999999999999999999999 9999999999
Q ss_pred hhhcccccCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhhcCCCCCCCCHHHHhhhcc------cCCCC-ChHH
Q 008777 296 GIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLT------CNDFD-PELA 368 (554)
Q Consensus 296 ~l~~LL~sd~L~V~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~IRf~lls~~~L~~~v~------~~~l~-~~~~ 368 (554)
.+..||++|+|+|.+|++||++|++|++|+ .++|.+++ ++||++|||++|++++|.+++. .+.+. ++.|
T Consensus 153 ~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 228 (534)
T PHA03098 153 ELIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRC 228 (534)
T ss_pred HHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccc
Confidence 999999999999999999999999999998 78899998 8999999999999999998774 44443 5678
Q ss_pred HHHHHHHHhhhccC-cccch---hh----------------cccccc-----ccc-ccc-e-----eceeeecccccccc
Q 008777 369 SKVVLESLFFKAET-PYRQR---AL----------------AAEEAN-----STY-RRF-V-----ERAYKYRPVKVVEF 416 (554)
Q Consensus 369 ~~~l~eAl~~~~~~-~~~q~---~~----------------~~~~t~-----~~p-R~~-~-----~~~~~~~~~~~Ve~ 416 (554)
...+.++..++... |.... .+ ..+..+ ..| +.. . ..+|+.|+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~--- 305 (534)
T PHA03098 229 IKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNK--- 305 (534)
T ss_pred hHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcC---
Confidence 88888887654201 11000 00 000000 001 111 1 23555555421
Q ss_pred cccccceeEeeecCcCceeeccC--CCceeEEEEEECCcEEEEcccCCCcccceEEEEE---------------------
Q 008777 417 ELPRQQCVVYLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG--------------------- 473 (554)
Q Consensus 417 ydp~~~~w~~~d~~~~~W~~l~p--~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~--------------------- 473 (554)
.....+....||+.+++|..+++ .+|.++++++++|+||++||.++....+++++||
T Consensus 306 ~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~ 385 (534)
T PHA03098 306 NNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV 385 (534)
T ss_pred CCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE
Confidence 11123456678999999988876 6899999999999999999987655567788887
Q ss_pred --------eeecccCCC-ccccccccccceeecc---CceeecCCCCceeeeceeeec
Q 008777 474 --------LFLGMQEKG-SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVG 519 (554)
Q Consensus 474 --------~~gG~~~~~-~l~s~V~~~~~E~YdP---~W~~va~m~~~~~~~g~~~~g 519 (554)
++||....+ .++++ |+||| +|+.+++|+.+|..+++++.+
T Consensus 386 ~~~~~~iYv~GG~~~~~~~~~~v------~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 437 (534)
T PHA03098 386 VNVNNLIYVIGGISKNDELLKTV------ECFSLNTNKWSKGSPLPISHYGGCAIYHD 437 (534)
T ss_pred EEECCEEEEECCcCCCCcccceE------EEEeCCCCeeeecCCCCccccCceEEEEC
Confidence 356754333 34554 99999 899999999999888776544
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.97 E-value=3.1e-31 Score=265.04 Aligned_cols=220 Identities=22% Similarity=0.329 Sum_probs=198.6
Q ss_pred cceeEEEEE--EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCceecCc--hhhHHH
Q 008777 142 MDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT--PTALLD 217 (554)
Q Consensus 142 ~~~DV~l~v--~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~--~~~v~~ 217 (554)
..+||++.+ ++|+|||+|||+||.|||||+.++|.|+.+..|.|+ +-..++|+.+|+|||||++.++. .+.+.+
T Consensus 43 ~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld 120 (620)
T KOG4350|consen 43 DYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEEDILLD 120 (620)
T ss_pred cccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHHHHHH
Confidence 477888888 579999999999999999999999999999999998 78899999999999999998754 267899
Q ss_pred HHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCChhhh
Q 008777 218 VLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGI 297 (554)
Q Consensus 218 LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~~~l 297 (554)
.|.+|++|++..|.....+||++ -+..+|++.++..|..| ++.+|.+.|+.|+.+|..++.. .+.|..|+.+.|
T Consensus 121 ~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l~~Lt~~C~mfmDrnA~~lL~-~~sFn~LSk~sL 194 (620)
T KOG4350|consen 121 YLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QLTDLTDYCMMFMDRNADQLLE-DPSFNRLSKDSL 194 (620)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cchHHHHHHHHHHhcCHHhhhc-CcchhhhhHHHH
Confidence 99999999999999999999999 79999999999999988 8999999999999999999999 999999999999
Q ss_pred hcccccCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhhcCCCCCCCCHHHHhhhcccCCCCChHHHHHHHHHHh
Q 008777 298 EAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPELASKVVLESLF 377 (554)
Q Consensus 298 ~~LL~sd~L~V~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~IRf~lls~~~L~~~v~~~~l~~~~~~~~l~eAl~ 377 (554)
.++|.+|..- +.|..+|.||.+|.++| . ++.. ..|++.||+|+|+...|.+++.+..+..+ +.|++|+.
T Consensus 195 ~e~l~RDsFf-ApE~~IFlAv~~W~~~N---s---ke~~-k~~~~~VRLPLm~lteLLnvVRPsGllsp---D~iLDAI~ 263 (620)
T KOG4350|consen 195 KELLARDSFF-APELKIFLAVRSWHQNN---S---KEAS-KVLLELVRLPLMTLTELLNVVRPSGLLSP---DTILDAIE 263 (620)
T ss_pred HHHHhhhccc-chHHHHHHHHHHHHhcC---c---hhhH-HHHHHHHhhhhccHHHHHhccCcccCcCH---HHHHHHHH
Confidence 9999999985 68999999999999998 3 2223 57999999999999999999999998643 34566666
Q ss_pred hhc
Q 008777 378 FKA 380 (554)
Q Consensus 378 ~~~ 380 (554)
-..
T Consensus 264 vrs 266 (620)
T KOG4350|consen 264 VRS 266 (620)
T ss_pred hhc
Confidence 544
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.90 E-value=6.3e-24 Score=218.07 Aligned_cols=212 Identities=24% Similarity=0.388 Sum_probs=190.5
Q ss_pred cceeEEEEE-------EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCceecCchhh
Q 008777 142 MDLSTVLRV-------KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTA 214 (554)
Q Consensus 142 ~~~DV~l~v-------~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~ 214 (554)
..+|+.+.| +.|+|||.|||..|.+|.+||++++.|....+|.++ ++++.+|..+|+|||++.+.+.. ++
T Consensus 113 ~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flYsdev~~~~-dt 189 (521)
T KOG2075|consen 113 LLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLYSDEVKLAA-DT 189 (521)
T ss_pred ccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHhcchhhhhH-HH
Confidence 456666666 259999999999999999999999999877889988 99999999999999999999998 99
Q ss_pred HHHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhc-cccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCC
Q 008777 215 LLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL-PSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLP 293 (554)
Q Consensus 215 v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~l-A~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~ 293 (554)
+..+|.+|++|.++.|.+.|.+||++ .+.+.|.+..+.. |..+ .-++|.+.|++-|..+|..... .+.|....
T Consensus 190 vi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf----~ep~Li~~c~e~id~~~~~al~-~EGf~did 263 (521)
T KOG2075|consen 190 VITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF----DEPSLISICLEVIDKSFEDALT-PEGFCDID 263 (521)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----cCHHHHHHHHHHhhhHHHhhhC-ccceeehh
Confidence 99999999999999999999999999 7888888877765 6665 7899999999999999999999 99999988
Q ss_pred --hhhhhcccccCccccCCHHHHHHHHHHHHhhcCC------CHHHHHHHHHHHhhcCCCCCCCCHHHHhhhcccCCCC
Q 008777 294 --LAGIEAVLASDDLQIASEDAVYDFALKWARTHYP------KLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD 364 (554)
Q Consensus 294 --~~~l~~LL~sd~L~V~sE~~Vf~av~~Wi~~~~~------~~~~R~~~l~~~Ll~~IRf~lls~~~L~~~v~~~~l~ 364 (554)
.+.++++|+++.|.+. |..+|+|+++|+...++ ..+.+++.+ .+.+..||||+|..+++..-+++.++.
T Consensus 264 ~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eefa~~~e~sgIl 340 (521)
T KOG2075|consen 264 STRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEFARGVEQSGIL 340 (521)
T ss_pred hHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhhccCccccCCc
Confidence 9999999999999985 99999999999998753 345667888 799999999999999999888877774
No 7
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.76 E-value=2.4e-18 Score=173.32 Aligned_cols=176 Identities=16% Similarity=0.280 Sum_probs=164.8
Q ss_pred CCcceeEEEEE--EEEEeehhhccccChHhHHhhcCCCcccCccEEEEe--cCCCCHHHHHHHHHHHhcCceecCchhhH
Q 008777 140 WSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLR--IHASEEAALMELLNFMYSSTLSTTTPTAL 215 (554)
Q Consensus 140 ~~~~~DV~l~v--~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~--~~~v~~~~f~~lL~fiYtg~l~i~~~~~v 215 (554)
++..+||++.. .+.+.||.-|. .|+||++||.|.|+|++++.|.|. ++.++..+|..++.-+|.+++.|+. +.+
T Consensus 66 q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l-~dv 143 (488)
T KOG4682|consen 66 QGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL-SDV 143 (488)
T ss_pred cCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH-HHH
Confidence 45679999998 68999999996 499999999999999999987766 4679999999999999999999999 899
Q ss_pred HHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCChh
Q 008777 216 LDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLA 295 (554)
Q Consensus 216 ~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~~ 295 (554)
..+|.+|.++++++|.+.|.+-+.+ .|++.|++.++..+.+| +...+++.|++++..|+-.+.. ..-+.+++.+
T Consensus 144 ~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~vk~kc~ewl~~nl~~i~~-~q~l~ei~~~ 217 (488)
T KOG4682|consen 144 VGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESVKKKCLEWLLNNLMTIQN-VQLLKEISIN 217 (488)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHHHHHHHHHHHHhhHhhhh-HHHHHhcCHH
Confidence 9999999999999999999999999 89999999999999999 9999999999999999999998 7788899999
Q ss_pred hhhcccccCccccCC-HHHHHHHHHHHHh
Q 008777 296 GIEAVLASDDLQIAS-EDAVYDFALKWAR 323 (554)
Q Consensus 296 ~l~~LL~sd~L~V~s-E~~Vf~av~~Wi~ 323 (554)
.+..+|.|.+|-|-+ |-.+|..+..|+-
T Consensus 218 Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 218 LMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred HHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 999999999998776 9999999999975
No 8
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.72 E-value=2.5e-18 Score=147.79 Aligned_cols=103 Identities=32% Similarity=0.612 Sum_probs=93.5
Q ss_pred HHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCChhhhhcccccCccccCCHHHHHHHHHHHHhhcCC
Q 008777 248 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 327 (554)
Q Consensus 248 ~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~~~l~~LL~sd~L~V~sE~~Vf~av~~Wi~~~~~ 327 (554)
|+.++.+|..| ++.+|.++|.+||..||.++.+ +++|++||.+.+..||++++|+|.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 78999999999 9999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCHHHHhhhcc
Q 008777 328 KLEERREILGSRLGRLIRFPYMTCRKLKKVLT 359 (554)
Q Consensus 328 ~~~~R~~~l~~~Ll~~IRf~lls~~~L~~~v~ 359 (554)
+++|.+++ .+|+++|||++|++++|.+.++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 78899988 8999999999999999998763
No 9
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.69 E-value=5e-17 Score=141.28 Aligned_cols=97 Identities=26% Similarity=0.474 Sum_probs=85.8
Q ss_pred CcceeEEEEEE---EEEeehhhccccChHhHHhhcCC-CcccCccEEEEecCCCCHHHHHHHHHHHhcCceecC-chhhH
Q 008777 141 SMDLSTVLRVK---TVHISSPILAAKSPFFYKLFSNG-MRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTT-TPTAL 215 (554)
Q Consensus 141 ~~~~DV~l~v~---~f~aHr~ILaa~S~yFramf~~~-~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~-~~~~v 215 (554)
+.++|++|.++ +|+|||.||+++|+||++||.++ +.+....+|.++ ++++++|+.+++|+|+|++.++ . +++
T Consensus 8 ~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~~~~~-~~~ 84 (111)
T PF00651_consen 8 NEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIEINSD-ENV 84 (111)
T ss_dssp TTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEEEE-T-TTH
T ss_pred CCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCcccCCHH-HHH
Confidence 36899999984 79999999999999999999998 666666677777 9999999999999999999998 7 899
Q ss_pred HHHHHHhchhcccchHHHHhhhhcc
Q 008777 216 LDVLMAADKFEVASCMRYCSRLLRN 240 (554)
Q Consensus 216 ~~LL~aAd~l~i~~L~~~C~~~L~~ 240 (554)
.+++.+|++|+++.|++.|+++|.+
T Consensus 85 ~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 85 EELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 9999999999999999999999976
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.67 E-value=1.4e-16 Score=146.82 Aligned_cols=171 Identities=15% Similarity=0.273 Sum_probs=141.9
Q ss_pred cchhhhHHHHHHHhcCCCCCCCcceeEEEEE-----EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHH
Q 008777 120 ADVGLNLKQCEEATGNIDPAWSMDLSTVLRV-----KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAA 194 (554)
Q Consensus 120 ~~~~~~l~~L~~~r~~~~~~~~~~~DV~l~v-----~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~ 194 (554)
|-..++|.--..+.+ ...++|+++.+ +.++|||.||||||++.+ |.++-.| +..+..+. ++++++
T Consensus 48 SF~SRLLaitadL~E-----k~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~d--Dad~Ea 117 (280)
T KOG4591|consen 48 SFISRLLAITADLLE-----KEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLD--DADFEA 117 (280)
T ss_pred hHHHHHHHHHHHHhh-----cccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhccc--ccCHHH
Confidence 345566655555544 34689999988 369999999999999886 3333222 22334444 999999
Q ss_pred HHHHHHHHhcCceecCc-hhhHHHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHH
Q 008777 195 LMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQ 273 (554)
Q Consensus 195 f~~lL~fiYtg~l~i~~-~~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~ 273 (554)
|...++||||+++.+.. ...+.++...|+.|+++-|++.|++-+-. -++++||+.++++|+.. +...|...|-+
T Consensus 118 ~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL~n~~~e 192 (280)
T KOG4591|consen 118 FHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQLMNVAAE 192 (280)
T ss_pred HHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHHHHHHHH
Confidence 99999999999998765 25678999999999999999999999999 69999999999999998 89999999999
Q ss_pred HHHHhhHhhhccchhhcCCChhhhhcccccCccc
Q 008777 274 FLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQ 307 (554)
Q Consensus 274 fi~~nf~~v~~~~~~fl~L~~~~l~~LL~sd~L~ 307 (554)
.|+.++.++-. ++|.+++...+..++.+..-+
T Consensus 193 iIA~~W~dL~~--a~FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 193 IIAGAWDDLGK--ADFAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred HHHhhccccCh--HHHHhccHHHHHHHHcCCCcc
Confidence 99999999876 899999999999999987543
No 11
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.64 E-value=6.8e-16 Score=131.58 Aligned_cols=99 Identities=28% Similarity=0.512 Sum_probs=90.6
Q ss_pred HHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCChhhhhcccccCccccCCHHHHHHHHHHHHhhcCC
Q 008777 248 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 327 (554)
Q Consensus 248 ~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~~~l~~LL~sd~L~V~sE~~Vf~av~~Wi~~~~~ 327 (554)
|+.++.+|+.| ++..|.++|.+||.+||..+.+ +++|++||.+.+..||++|+|+|.+|..+|+++++|++|+
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 56778888877 8999999999999999999999 8999999999999999999999989999999999999998
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCHHHHhh
Q 008777 328 KLEERREILGSRLGRLIRFPYMTCRKLKK 356 (554)
Q Consensus 328 ~~~~R~~~l~~~Ll~~IRf~lls~~~L~~ 356 (554)
...|. ++ ..++++|||++|+++.|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 55554 66 7999999999999998875
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.58 E-value=1.6e-14 Score=160.09 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=87.5
Q ss_pred cceeEeeecCcCceeeccC--CCceeEEEEEECCcEEEEcccC-CCcccceEEEEE------------------------
Q 008777 421 QQCVVYLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHC-NMDQQSSFHCFG------------------------ 473 (554)
Q Consensus 421 ~~~w~~~d~~~~~W~~l~p--~~r~~~~~~vl~g~lYviGG~~-~~~~~rs~~~y~------------------------ 473 (554)
.+++++|||++++|..+++ .+|..+++++++|+||++||++ |....+++++||
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 5788999999999999998 8899999999999999999999 777899999998
Q ss_pred -----eeecccCCCccccccccccceeecc---CceeecCCCCceeeeceeeeccc
Q 008777 474 -----LFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYR 521 (554)
Q Consensus 474 -----~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~m~~~~~~~g~~~~g~~ 521 (554)
++||.+|...++++ ||||| +|+.++||+.+|..+|+++++++
T Consensus 380 ~g~iYavGG~dg~~~l~sv------E~YDp~~~~W~~va~m~~~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSV------ECYDPVTNKWTPVAPMLTRRSGHGVAVLGGK 429 (571)
T ss_pred CCEEEEEeccccccccccE------EEecCCCCcccccCCCCcceeeeEEEEECCE
Confidence 58999999999996 99999 99999999999999999976644
No 13
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.57 E-value=5e-15 Score=122.25 Aligned_cols=88 Identities=27% Similarity=0.474 Sum_probs=81.0
Q ss_pred eEEEEE--EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCceecCchhhHHHHHHHh
Q 008777 145 STVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAA 222 (554)
Q Consensus 145 DV~l~v--~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~LL~aA 222 (554)
||++.+ +.|++||.+|+++|+||++||.+++.++....+.++ +.++.+|+.+|+|+|++++.++. .++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHH
Confidence 466666 689999999999999999999998888777888887 89999999999999999999998 7999999999
Q ss_pred chhcccchHHHHh
Q 008777 223 DKFEVASCMRYCS 235 (554)
Q Consensus 223 d~l~i~~L~~~C~ 235 (554)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999985
No 14
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.50 E-value=1.6e-14 Score=156.17 Aligned_cols=140 Identities=14% Similarity=0.239 Sum_probs=119.8
Q ss_pred CCCCcceeEEEEEE-EEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHh-cCceecC----c
Q 008777 138 PAWSMDLSTVLRVK-TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY-SSTLSTT----T 211 (554)
Q Consensus 138 ~~~~~~~DV~l~v~-~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiY-tg~l~i~----~ 211 (554)
.....+|+|++..+ .++|||++|+||++||..||..-|.|++. |+.....+..+.++.+|+|+| +++..+- .
T Consensus 707 h~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~ 784 (1267)
T KOG0783|consen 707 HEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKE 784 (1267)
T ss_pred CccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccch
Confidence 34556778877774 59999999999999999999999988776 555433667999999999999 4444321 1
Q ss_pred hhhHHHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhc
Q 008777 212 PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISK 284 (554)
Q Consensus 212 ~~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 284 (554)
.+-+.++|..||.|-+.+|+..|+.-|.+ .|+..||..++++|..| ++.+|+..|++||..|+..+..
T Consensus 785 ~dF~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 785 SDFMFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHHHHHHHHHHHHHhHHHHHH
Confidence 25688999999999999999999999999 89999999999999999 9999999999999999988865
No 15
>PHA02713 hypothetical protein; Provisional
Probab=99.38 E-value=8.5e-12 Score=138.58 Aligned_cols=237 Identities=8% Similarity=-0.001 Sum_probs=144.1
Q ss_pred ccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCChhhhhcccccCccccCCHHHHHHHHHHH
Q 008777 242 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKW 321 (554)
Q Consensus 242 ~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~~~l~~LL~sd~L~V~sE~~Vf~av~~W 321 (554)
.|+.+|+..++..|+.+ ..+.|++.|.+|+.+++..- + .=++ ..++.. . ..+ .+.+++.++
T Consensus 90 ~i~~~nv~~ll~aA~~l----qi~~l~~~C~~~l~~~l~~~-N-Cl~i--------~~~~~~--~--~~~-~L~~~a~~~ 150 (557)
T PHA02713 90 HISSMNVIDVLKCADYL----LIDDLVTDCESYIKDYTNHD-T-CIYM--------YHRLYE--M--SHI-PIVKYIKRM 150 (557)
T ss_pred CCCHHHHHHHHHHHHHH----CHHHHHHHHHHHHHhhCCcc-c-hHHH--------HHHHHh--c--cch-HHHHHHHHH
Confidence 58899999999999988 89999999999998765421 1 1111 111111 1 111 255666666
Q ss_pred HhhcCCCHHHHHHHHHHHhhcCCCCCCCCHHHHhhhcccCC-CC--ChH-HHHH-----------------HHHHHhhhc
Q 008777 322 ARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCND-FD--PEL-ASKV-----------------VLESLFFKA 380 (554)
Q Consensus 322 i~~~~~~~~~R~~~l~~~Ll~~IRf~lls~~~L~~~v~~~~-l~--~~~-~~~~-----------------l~eAl~~~~ 380 (554)
+..+ + .++.+.=.|-.|+.+.|.+++.++. +. .+. ..+. |++..++..
T Consensus 151 i~~~----------f-~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~ 219 (557)
T PHA02713 151 LMSN----------I-PTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQN 219 (557)
T ss_pred HHHH----------H-HHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhh
Confidence 6655 3 4566666667788888888777654 31 110 0000 111111111
Q ss_pred cCccc-c-----h----------hh-cccc-cccccccceeceeeecccccccccccccceeEeeecCcCceeeccC--C
Q 008777 381 ETPYR-Q-----R----------AL-AAEE-ANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP--A 440 (554)
Q Consensus 381 ~~~~~-q-----~----------~~-~~~~-t~~~pR~~~~~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p--~ 440 (554)
..+.. . + .+ +... .+.+||. ..+++.++- +........+||+.+++|..+++ .
T Consensus 220 l~~~~~~~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r~--~~l~~~~g~-----~~~~~~~v~~yd~~~~~W~~l~~mp~ 292 (557)
T PHA02713 220 LDKKSRLLLYSNKTINMYPSCIQFLLDNKQNRNIIPRQ--LCLVCHDTK-----YNVCNPCILVYNINTMEYSVISTIPN 292 (557)
T ss_pred cchhhhhhhcchHHHHhhHHHHHHHhhhhhhcccCCcc--eEEEEecCc-----cccCCCCEEEEeCCCCeEEECCCCCc
Confidence 00000 0 0 00 0000 0112333 223333221 01112345678888888888877 7
Q ss_pred CceeEEEEEECCcEEEEcccC-CCcccceEEEEE-----------------------------eeecccCCCcccccccc
Q 008777 441 GRIYSQAFHLGGQGFFLSAHC-NMDQQSSFHCFG-----------------------------LFLGMQEKGSVSFAVDY 490 (554)
Q Consensus 441 ~r~~~~~~vl~g~lYviGG~~-~~~~~rs~~~y~-----------------------------~~gG~~~~~~l~s~V~~ 490 (554)
+|.++++++++|+||++||.+ +....+++++|| ++||.++...++++
T Consensus 293 ~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sv--- 369 (557)
T PHA02713 293 HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTI--- 369 (557)
T ss_pred cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceE---
Confidence 788899999999999999985 333467889998 47887766666675
Q ss_pred ccceeecc---CceeecCCCCceeeeceeeeccc
Q 008777 491 EFAARIKP---TEEYVSKYKGNYTFTGGKAVGYR 521 (554)
Q Consensus 491 ~~~E~YdP---~W~~va~m~~~~~~~g~~~~g~~ 521 (554)
|+||| +|+.+++|+.+|..+++++++++
T Consensus 370 ---e~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~ 400 (557)
T PHA02713 370 ---ECYTMGDDKWKMLPDMPIALSSYGMCVLDQY 400 (557)
T ss_pred ---EEEECCCCeEEECCCCCcccccccEEEECCE
Confidence 99999 99999999999999998866543
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=99.16 E-value=5.7e-10 Score=122.05 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=73.1
Q ss_pred ceeEeeecCcCceeeccC--CCceeEEEEEECCcEEEEcccCCCcccceEEEEE--------------------------
Q 008777 422 QCVVYLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG-------------------------- 473 (554)
Q Consensus 422 ~~w~~~d~~~~~W~~l~p--~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~-------------------------- 473 (554)
++..+|||.+++|..+++ .+|.+++++++||+||++||.++. +++++|+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g 363 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINN 363 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC---CceEEEECCCCeEEECCCCCCCCcccEEEEECC
Confidence 456679999999999987 889999999999999999998542 5577776
Q ss_pred ---eeecccCCCccccccccccceeecc---CceeecCCCCceeeeceeeeccc
Q 008777 474 ---LFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYR 521 (554)
Q Consensus 474 ---~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~m~~~~~~~g~~~~g~~ 521 (554)
++||.++. ..+ | |+||| +|+.+++|+.+|..++++++|++
T Consensus 364 ~IYviGG~~~~--~~~-v-----e~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 364 VIYVIGGHSET--DTT-T-----EYLLPNHDQWQFGPSTYYPHYKSCALVFGRR 409 (480)
T ss_pred EEEEecCcCCC--Ccc-E-----EEEeCCCCEEEeCCCCCCccccceEEEECCE
Confidence 45665432 244 4 99999 99999999999999998877764
No 17
>PHA03098 kelch-like protein; Provisional
Probab=98.91 E-value=1.9e-08 Score=111.65 Aligned_cols=236 Identities=11% Similarity=0.076 Sum_probs=137.9
Q ss_pred ccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCChhhhhcccccCccccCCHHHHHHHHHHH
Q 008777 242 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKW 321 (554)
Q Consensus 242 ~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~~~l~~LL~sd~L~V~sE~~Vf~av~~W 321 (554)
.++.+|+..++..|..+ +.+.|++.|.+|+..++..- + .-+++.+. . . .+-..+.+++..+
T Consensus 72 ~i~~~~~~~ll~~A~~l----~~~~l~~~C~~~l~~~l~~~-n-c~~~~~~a-----~------~--~~~~~L~~~~~~~ 132 (534)
T PHA03098 72 NITSNNVKDILSIANYL----IIDFLINLCINYIIKIIDDN-N-CIDIYRFS-----F------F--YGCKKLYSAAYNY 132 (534)
T ss_pred EEcHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHhCCHh-H-HHHHHHHH-----H------H--cCcHHHHHHHHHH
Confidence 57889999999999999 89999999999998764311 1 11111111 0 0 1223566777777
Q ss_pred HhhcCCCHHHHHHHHHHHhhcCCCCCCCCHHHHhhhcccCCCC--ChH-HHHH------------------HHHHHhhhc
Q 008777 322 ARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PEL-ASKV------------------VLESLFFKA 380 (554)
Q Consensus 322 i~~~~~~~~~R~~~l~~~Ll~~IRf~lls~~~L~~~v~~~~l~--~~~-~~~~------------------l~eAl~~~~ 380 (554)
+..+ + .++.+.=.|..|+.+.|..+++++.+. .+. ..+. |++..++..
T Consensus 133 i~~n----------f-~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~ 201 (534)
T PHA03098 133 IRNN----------I-ELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITF 201 (534)
T ss_pred HHHH----------H-HHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccc
Confidence 7665 3 566777778888888888888877763 111 0010 111111111
Q ss_pred cCcc-------------cchhhccccc------------ccccccc--eeceeeecccccccccccccceeEeeecCcCc
Q 008777 381 ETPY-------------RQRALAAEEA------------NSTYRRF--VERAYKYRPVKVVEFELPRQQCVVYLDLKREE 433 (554)
Q Consensus 381 ~~~~-------------~q~~~~~~~t------------~~~pR~~--~~~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~ 433 (554)
..+. ..+...++.. ...||.. ...+++.++.. + .......|++...+
T Consensus 202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-~~~~~~~~~~~~~~ 275 (534)
T PHA03098 202 LSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMS-----I-FTYNYITNYSPLSE 275 (534)
T ss_pred cCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccc-----h-hhceeeecchhhhh
Confidence 0000 0000000000 0001110 01111111110 0 11223456666777
Q ss_pred eeeccCCC-ceeEEEEEECCcEEEEcccCCCc-ccceEEEEE-----------------------------eeecccCCC
Q 008777 434 CAHLFPAG-RIYSQAFHLGGQGFFLSAHCNMD-QQSSFHCFG-----------------------------LFLGMQEKG 482 (554)
Q Consensus 434 W~~l~p~~-r~~~~~~vl~g~lYviGG~~~~~-~~rs~~~y~-----------------------------~~gG~~~~~ 482 (554)
|..+.+.+ +..++++++++.+|++||..+.. ..+.+++|| ++||.++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~ 355 (534)
T PHA03098 276 INTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI 355 (534)
T ss_pred cccccCccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCE
Confidence 88776633 44568999999999999986532 345677776 467777555
Q ss_pred ccccccccccceeecc---CceeecCCCCceeeeceeeec
Q 008777 483 SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVG 519 (554)
Q Consensus 483 ~l~s~V~~~~~E~YdP---~W~~va~m~~~~~~~g~~~~g 519 (554)
.++++ |+||| +|+.+++|+.+|..+++++++
T Consensus 356 ~~~~v------~~yd~~~~~W~~~~~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 356 SLNTV------ESWKPGESKWREEPPLIFPRYNPCVVNVN 389 (534)
T ss_pred ecceE------EEEcCCCCceeeCCCcCcCCccceEEEEC
Confidence 56665 99999 999999999999988877554
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.50 E-value=3.4e-07 Score=95.90 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=66.1
Q ss_pred ceeEeeecCcCceeeccC--C-CceeEEEEEECCcEEEEcccCCCcc-cceEEEEE------------------------
Q 008777 422 QCVVYLDLKREECAHLFP--A-GRIYSQAFHLGGQGFFLSAHCNMDQ-QSSFHCFG------------------------ 473 (554)
Q Consensus 422 ~~w~~~d~~~~~W~~l~p--~-~r~~~~~~vl~g~lYviGG~~~~~~-~rs~~~y~------------------------ 473 (554)
++.+.|||.+++|+.+.+ . +|..+++++++|+||++||...... ...+++|+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 678889999999999876 3 5788999999999999999632100 00111111
Q ss_pred --------------eeecccCCC-----------------ccccccccccceeecc---CceeecCCCCceeeeceeeec
Q 008777 474 --------------LFLGMQEKG-----------------SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVG 519 (554)
Q Consensus 474 --------------~~gG~~~~~-----------------~l~s~V~~~~~E~YdP---~W~~va~m~~~~~~~g~~~~g 519 (554)
++||.+..+ .+.+ | |+||| +|+.+++|+.+|..+++++++
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~~~~~~~~~~~ 321 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS-S-----EVYALDNGKWSKVGKLPQGLAYGVSVSWN 321 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE-e-----eEEEecCCcccccCCCCCCceeeEEEEcC
Confidence 456654211 1234 3 99999 999999999999888777666
Q ss_pred cc
Q 008777 520 YR 521 (554)
Q Consensus 520 ~~ 521 (554)
++
T Consensus 322 ~~ 323 (346)
T TIGR03547 322 NG 323 (346)
T ss_pred CE
Confidence 54
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.49 E-value=3.5e-07 Score=95.83 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=45.5
Q ss_pred ceeeecccccccccccccceeEeeec--CcCceeeccC---CCceeEEEEEECCcEEEEcccCCC------cccceEEEE
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDL--KREECAHLFP---AGRIYSQAFHLGGQGFFLSAHCNM------DQQSSFHCF 472 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~--~~~~W~~l~p---~~r~~~~~~vl~g~lYviGG~~~~------~~~rs~~~y 472 (554)
.+|+.++.. .+.|..||+ ..++|..+++ .+|.++++++++|+||++||+... ..++++++|
T Consensus 19 ~vyv~GG~~--------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 19 KVYVGLGSA--------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred EEEEEcccc--------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEE
Confidence 466655531 245667774 6778999986 368999999999999999998532 135678888
Q ss_pred E
Q 008777 473 G 473 (554)
Q Consensus 473 ~ 473 (554)
|
T Consensus 91 d 91 (346)
T TIGR03547 91 D 91 (346)
T ss_pred E
Confidence 7
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.48 E-value=4.6e-07 Score=94.06 Aligned_cols=108 Identities=8% Similarity=-0.037 Sum_probs=73.8
Q ss_pred ceeeecccccccccccccceeEeeecCcCceeeccC---CCceeEEEEEECCcEEEEcccCCCcccceEEEEE-------
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP---AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG------- 473 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p---~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~------- 473 (554)
.+|+.++... ....+..+.||+.+++|+.+++ .+|..+++++++|+||++||.++.. ...+++||
T Consensus 125 ~iYv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 125 TLYVGGGNRN----GKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEeCcCC----CccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeE
Confidence 4677666321 1124567778888888998874 4788888999999999999975421 22344554
Q ss_pred ----------------------------eeecccCCCc-------------------------------cccccccccce
Q 008777 474 ----------------------------LFLGMQEKGS-------------------------------VSFAVDYEFAA 494 (554)
Q Consensus 474 ----------------------------~~gG~~~~~~-------------------------------l~s~V~~~~~E 494 (554)
++||.++... +++.| |
T Consensus 200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~ 274 (323)
T TIGR03548 200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI-----L 274 (323)
T ss_pred ECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE-----E
Confidence 3455543210 11223 9
Q ss_pred eecc---CceeecCCC-Cceeeeceeeeccc
Q 008777 495 RIKP---TEEYVSKYK-GNYTFTGGKAVGYR 521 (554)
Q Consensus 495 ~YdP---~W~~va~m~-~~~~~~g~~~~g~~ 521 (554)
+||| +|+.+++|+ .+|..+++++++++
T Consensus 275 ~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~ 305 (323)
T TIGR03548 275 IYNVRTGKWKSIGNSPFFARCGAALLLTGNN 305 (323)
T ss_pred EEECCCCeeeEcccccccccCchheEEECCE
Confidence 9999 999999997 58888888888764
No 21
>PLN02153 epithiospecifier protein
Probab=98.45 E-value=1e-06 Score=92.27 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=70.7
Q ss_pred ceeeecccccccccccccceeEeeecCcCceeecc-------CCCceeEEEEEECCcEEEEcccCCC------cccceEE
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLF-------PAGRIYSQAFHLGGQGFFLSAHCNM------DQQSSFH 470 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~-------p~~r~~~~~~vl~g~lYviGG~~~~------~~~rs~~ 470 (554)
.+|+.++... ....+...+||+.+++|..+. |.+|..|++++++++||++||++.. ..+++++
T Consensus 87 ~iyv~GG~~~----~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 87 KLYIFGGRDE----KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred EEEEECCCCC----CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEE
Confidence 4677666321 111234556677777777654 4689999999999999999998531 1246678
Q ss_pred EEE--------------------------------eeecccCC--------Cccccccccccceeecc---CceeecC--
Q 008777 471 CFG--------------------------------LFLGMQEK--------GSVSFAVDYEFAARIKP---TEEYVSK-- 505 (554)
Q Consensus 471 ~y~--------------------------------~~gG~~~~--------~~l~s~V~~~~~E~YdP---~W~~va~-- 505 (554)
+|| ++||.+.. ..++. | ++||| +|+.+++
T Consensus 163 ~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~-v-----~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 163 AYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNA-V-----QFFDPASGKWTEVETTG 236 (341)
T ss_pred EEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCc-e-----EEEEcCCCcEEeccccC
Confidence 887 23443211 01233 4 99999 9999975
Q ss_pred -CCCceeeeceeeecc
Q 008777 506 -YKGNYTFTGGKAVGY 520 (554)
Q Consensus 506 -m~~~~~~~g~~~~g~ 520 (554)
+|.+|..++++++|+
T Consensus 237 ~~P~~r~~~~~~~~~~ 252 (341)
T PLN02153 237 AKPSARSVFAHAVVGK 252 (341)
T ss_pred CCCCCcceeeeEEECC
Confidence 688898888777764
No 22
>PLN02193 nitrile-specifier protein
Probab=98.44 E-value=1e-06 Score=96.26 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=74.8
Q ss_pred ceeeecccccccccccccceeEeeecCcCceeeccC-----CCceeEEEEEECCcEEEEcccCCCcccceEEEEE-----
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP-----AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG----- 473 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p-----~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~----- 473 (554)
.+|+.++... ....+...+||+.+++|+.+.+ .+|.+|++++++++||++||+++....+.+++||
T Consensus 230 ~lYvfGG~~~----~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 230 TLYVFGGRDA----SRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred EEEEECCCCC----CCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 4777666421 1123455667777777777654 6799999999999999999987655566677776
Q ss_pred ---------------------------eeecccCCCccccccccccceeecc---CceeecCC---CCceeeeceeeecc
Q 008777 474 ---------------------------LFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTGGKAVGY 520 (554)
Q Consensus 474 ---------------------------~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~m---~~~~~~~g~~~~g~ 520 (554)
++||.++. .++. | ++||| +|+.++++ |.+|..++++++++
T Consensus 306 W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~d-v-----~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~ 378 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDD-V-----HYYDPVQDKWTQVETFGVRPSERSVFASAAVGK 378 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCc-e-----EEEECCCCEEEEeccCCCCCCCcceeEEEEECC
Confidence 23444432 2344 3 99999 89999876 78899888876663
No 23
>PLN02153 epithiospecifier protein
Probab=98.40 E-value=1.3e-06 Score=91.45 Aligned_cols=110 Identities=10% Similarity=0.081 Sum_probs=72.8
Q ss_pred ceeeecccccccccccccceeEeeecCcCceeeccC---CCc---eeEEEEEECCcEEEEcccCCCcccceEEEEE----
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP---AGR---IYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG---- 473 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p---~~r---~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~---- 473 (554)
.+|+.++...- .....+....||+.+++|..+.+ .+| ..+++++++++||++||.++....+.+++||
T Consensus 34 ~iyv~GG~~~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 34 KLYSFGGELKP--NEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred EEEEECCccCC--CCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 46666654210 01123456678888888988765 233 3688899999999999986544455666666
Q ss_pred ------------------------------eeecccCCC------ccccccccccceeecc---CceeecCCC---Ccee
Q 008777 474 ------------------------------LFLGMQEKG------SVSFAVDYEFAARIKP---TEEYVSKYK---GNYT 511 (554)
Q Consensus 474 ------------------------------~~gG~~~~~------~l~s~V~~~~~E~YdP---~W~~va~m~---~~~~ 511 (554)
++||.+..+ .+.. | ++||| +|+.+++|. .+|.
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-v-----~~yd~~~~~W~~l~~~~~~~~~r~ 185 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT-I-----EAYNIADGKWVQLPDPGENFEKRG 185 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce-E-----EEEECCCCeEeeCCCCCCCCCCCC
Confidence 356664332 2334 3 99999 899999886 6787
Q ss_pred eeceeeeccc
Q 008777 512 FTGGKAVGYR 521 (554)
Q Consensus 512 ~~g~~~~g~~ 521 (554)
.+++++++++
T Consensus 186 ~~~~~~~~~~ 195 (341)
T PLN02153 186 GAGFAVVQGK 195 (341)
T ss_pred cceEEEECCe
Confidence 7776665543
No 24
>PF13964 Kelch_6: Kelch motif
Probab=98.40 E-value=4e-07 Score=67.44 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=38.5
Q ss_pred CceeEEEEEECCcEEEEcccCCCcccceEEEEEeeecccCCCccccccccccceeecc---CceeecCCCCce
Q 008777 441 GRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNY 510 (554)
Q Consensus 441 ~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~m~~~~ 510 (554)
+|..|++++++|+||++||.++. ...++. | |+||| +|+.+++|+.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----------------~~~~~~-v-----~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----------------GKYSND-V-----ERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----------------CCcccc-E-----EEEcCCCCcEEECCCCCCCC
Confidence 47889999999999999998652 112344 4 99999 999999999987
No 25
>PLN02193 nitrile-specifier protein
Probab=98.28 E-value=3.6e-06 Score=92.04 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=75.3
Q ss_pred ceeeecccccccccccccceeEeeecCcCceeeccC------CCceeEEEEEECCcEEEEcccCCCcccceEEEEE----
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP------AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG---- 473 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p------~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~---- 473 (554)
.+|+.++...- ..+..+.+.+||+.+++|..+.+ ..|..+++++++++||++||+++....+.+++||
T Consensus 177 ~iyv~GG~~~~--~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 177 KIYSFGGEFTP--NQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred EEEEECCcCCC--CCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 46676663210 11223456667777778876643 2356788999999999999987655567777777
Q ss_pred ----------------------------eeecccCCCccccccccccceeecc---CceeecC---CCCceeeeceeeec
Q 008777 474 ----------------------------LFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSK---YKGNYTFTGGKAVG 519 (554)
Q Consensus 474 ----------------------------~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~---m~~~~~~~g~~~~g 519 (554)
++||.++...+... ++||| +|+.+++ ++.+|..+++++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~------~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~ 328 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTL------DSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ 328 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceE------EEEECCCCEEEeCCCCCCCCCCCCCcEEEEEC
Confidence 46676665566664 99999 9999875 67778877777655
Q ss_pred c
Q 008777 520 Y 520 (554)
Q Consensus 520 ~ 520 (554)
+
T Consensus 329 g 329 (470)
T PLN02193 329 G 329 (470)
T ss_pred C
Confidence 4
No 26
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.25 E-value=3.9e-06 Score=87.14 Aligned_cols=81 Identities=6% Similarity=-0.055 Sum_probs=61.1
Q ss_pred ceeeccC--CCceeEEEEEECCcEEEEcccCCCcccceEEEEE---------------------------------eeec
Q 008777 433 ECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG---------------------------------LFLG 477 (554)
Q Consensus 433 ~W~~l~p--~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~---------------------------------~~gG 477 (554)
+|..+.+ .+|.++++++++++||++||.++....+++++|| ++||
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG 131 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGG 131 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeC
Confidence 6988875 7888899999999999999987655566677775 3455
Q ss_pred ccCCCccccccccccceeecc---CceeecCCCC-ceeeeceeeec
Q 008777 478 MQEKGSVSFAVDYEFAARIKP---TEEYVSKYKG-NYTFTGGKAVG 519 (554)
Q Consensus 478 ~~~~~~l~s~V~~~~~E~YdP---~W~~va~m~~-~~~~~g~~~~g 519 (554)
..+...++.+ ++||| +|+.+++|+. +|..+.+++++
T Consensus 132 ~~~~~~~~~v------~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 171 (323)
T TIGR03548 132 NRNGKPSNKS------YLFNLETQEWFELPDFPGEPRVQPVCVKLQ 171 (323)
T ss_pred cCCCccCceE------EEEcCCCCCeeECCCCCCCCCCcceEEEEC
Confidence 5433345554 99999 9999999984 78777665444
No 27
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.23 E-value=9.1e-07 Score=64.43 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=35.7
Q ss_pred CceeEEEEEECCcEEEEcccCCCcccceEEEEEeeecccCCCccccccccccceeecc---CceeecCCC
Q 008777 441 GRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYK 507 (554)
Q Consensus 441 ~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~m~ 507 (554)
+|.++++++++++||++||+++ ....++++ |+||| +|+.+++|+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-----------------~~~~~~~v------~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-----------------NNQPTNSV------EVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-----------------TSSBEEEE------EEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-----------------cCceeeeE------EEEeCCCCEEEEcCCCC
Confidence 5788999999999999999854 12234564 99999 999999996
No 28
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.12 E-value=4.8e-06 Score=88.41 Aligned_cols=94 Identities=9% Similarity=-0.012 Sum_probs=64.8
Q ss_pred ceeEeeecCcCceeeccC---CCceeEEEEEECCcEEEEcccCC-------------------------Ccccce-----
Q 008777 422 QCVVYLDLKREECAHLFP---AGRIYSQAFHLGGQGFFLSAHCN-------------------------MDQQSS----- 468 (554)
Q Consensus 422 ~~w~~~d~~~~~W~~l~p---~~r~~~~~~vl~g~lYviGG~~~-------------------------~~~~rs----- 468 (554)
+..++||+.+++|..+.+ .+|..+++++++++||++||... |...+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 567778888888888765 36778899999999999999521 111110
Q ss_pred --EE--------EEEeeecccCCCc--------------c---ccccccccceeecc---CceeecCCCCceeeeceeee
Q 008777 469 --FH--------CFGLFLGMQEKGS--------------V---SFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAV 518 (554)
Q Consensus 469 --~~--------~y~~~gG~~~~~~--------------l---~s~V~~~~~E~YdP---~W~~va~m~~~~~~~g~~~~ 518 (554)
.. ..-++||.+..+. + .+ | |+||| +|+.+++|+.+|..++++++
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~r~~~~av~~ 342 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS-D-----EIYALVNGKWQKVGELPQGLAYGVSVSW 342 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceee-h-----heEEecCCcccccCcCCCCccceEEEEe
Confidence 00 0114667643211 1 23 3 99999 99999999999999987777
Q ss_pred ccc
Q 008777 519 GYR 521 (554)
Q Consensus 519 g~~ 521 (554)
+++
T Consensus 343 ~~~ 345 (376)
T PRK14131 343 NNG 345 (376)
T ss_pred CCE
Confidence 764
No 29
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.09 E-value=8.4e-06 Score=89.78 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=68.0
Q ss_pred CCcceeEEEEEE--EEEeehhhccccChHhHHhhcCCCcccCccEEEEe----------cCCCCHHHHHHHHHHHhcCce
Q 008777 140 WSMDLSTVLRVK--TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLR----------IHASEEAALMELLNFMYSSTL 207 (554)
Q Consensus 140 ~~~~~DV~l~v~--~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~----------~~~v~~~~f~~lL~fiYtg~l 207 (554)
.....||++.|+ .|+|||.||+++|++||++|....+.+..+.|.+. .+++.|..|+.+|+||||+.+
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 345789999994 69999999999999999999764433322333332 559999999999999999854
Q ss_pred ecC--c-----------hhhHHH-------HHHHhchhcccchHHHHhh
Q 008777 208 STT--T-----------PTALLD-------VLMAADKFEVASCMRYCSR 236 (554)
Q Consensus 208 ~i~--~-----------~~~v~~-------LL~aAd~l~i~~L~~~C~~ 236 (554)
--. + .+|... ++-.+.+|++..|...-..
T Consensus 635 ~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 635 LSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred cCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 211 1 133333 6677777777776654433
No 30
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.08 E-value=9.5e-06 Score=86.16 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=38.8
Q ss_pred eeEeeecC--cCceeeccC---CCceeEEEEEECCcEEEEcccCC-C-----cccceEEEEE
Q 008777 423 CVVYLDLK--REECAHLFP---AGRIYSQAFHLGGQGFFLSAHCN-M-----DQQSSFHCFG 473 (554)
Q Consensus 423 ~w~~~d~~--~~~W~~l~p---~~r~~~~~~vl~g~lYviGG~~~-~-----~~~rs~~~y~ 473 (554)
.|..||+. .++|..+++ .+|..+++++++|+||++||+.. . ...+.+++||
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD 112 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYD 112 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEe
Confidence 45667765 468998875 47889999999999999999854 1 1246788887
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.03 E-value=4.4e-06 Score=84.76 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=100.9
Q ss_pred EEEEeehhhccccChHhHHhhcCCCcccCcc--EEEEecCCCCHHHHHHHHHHHhcCceecCchhhHHHHHHHhchhccc
Q 008777 151 KTVHISSPILAAKSPFFYKLFSNGMRESEQR--YVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVA 228 (554)
Q Consensus 151 ~~f~aHr~ILaa~S~yFramf~~~~~Es~~~--~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~LL~aAd~l~i~ 228 (554)
..++||++++. |..||+.||.|++.|++.+ ...+..+.....+.+.+++|+|+++..+.. +-+.+++..|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHhhHhhhh
Confidence 46999999995 6789999999999996522 222223378889999999999999999988 8899999999999765
Q ss_pred --c-hHHHHhhhhccc--ccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCC
Q 008777 229 --S-CMRYCSRLLRNL--PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNL 292 (554)
Q Consensus 229 --~-L~~~C~~~L~~l--~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L 292 (554)
+ |+.+....|++. -++.-++..++..+-.. ....|.+.+..|++.|+..+.. .+++..+
T Consensus 379 ~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~----~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~ 442 (516)
T KOG0511|consen 379 DDRLLKTAASAEITQWLELIDMYGVLDILEYCWDL----VACRLEQFAETHEARHLLLLLP-DPEGDSS 442 (516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHhcC-CchhhHH
Confidence 2 444444444330 24455677777765444 6778888899999999888888 7777653
No 32
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.75 E-value=1.2e-05 Score=82.33 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=106.0
Q ss_pred EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCceecCchhhHH---HHHHHhchhcc
Q 008777 151 KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALL---DVLMAADKFEV 227 (554)
Q Consensus 151 ~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~---~LL~aAd~l~i 227 (554)
+.+.+|+++++++|++|++|+.....+..+..+++. +.++..++.+..|+|+..-.... .... .++.+|.+++.
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhcccccc
Confidence 569999999999999999999987776666667776 89999999999999997554433 3443 88889999999
Q ss_pred cchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHHHHHH--hhHhhhc
Q 008777 228 ASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA--RYKDISK 284 (554)
Q Consensus 228 ~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~--nf~~v~~ 284 (554)
+.|+..|...|.. .+...++..++..++.+ .+..+..++..++.. +++.+..
T Consensus 187 ~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ld~l~~ 240 (297)
T KOG1987|consen 187 RHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGFKLDWLEK 240 (297)
T ss_pred HHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccchHhHHHH
Confidence 9999999999999 78888888888888877 778888889888886 6666654
No 33
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.66 E-value=1.3e-05 Score=78.20 Aligned_cols=99 Identities=21% Similarity=0.332 Sum_probs=73.1
Q ss_pred EEEeehhhccccChHhHHhhcCCCcccC---------ccEEEEecCCCCHHHHHH-HHHHHhcCceecCc----------
Q 008777 152 TVHISSPILAAKSPFFYKLFSNGMRESE---------QRYVTLRIHASEEAALME-LLNFMYSSTLSTTT---------- 211 (554)
Q Consensus 152 ~f~aHr~ILaa~S~yFramf~~~~~Es~---------~~~I~L~~~~v~~~~f~~-lL~fiYtg~l~i~~---------- 211 (554)
+++||++|.|+||++||.++....+|.. .+.|.+. .-+-|.+|.. +|.+|||+.+.++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifd-E~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeech-hhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 4999999999999999999876544432 2356664 3456666665 78999999876532
Q ss_pred -----------------hhhHHHHHHHhchhcccchHHHHhhhhcccccCcccHHHHH
Q 008777 212 -----------------PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYL 252 (554)
Q Consensus 212 -----------------~~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il 252 (554)
...+++|+.+|-+|.++-|.+.|++.+.. ....++...++
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~cL 397 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNGCL 397 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccccc
Confidence 03357888899999999999999998888 66666655444
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.61 E-value=6.4e-05 Score=73.45 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=69.1
Q ss_pred hhhhHHHHHHHhcCCCCCCCcceeEEEEEEEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHH
Q 008777 122 VGLNLKQCEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNF 201 (554)
Q Consensus 122 ~~~~l~~L~~~r~~~~~~~~~~~DV~l~v~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~f 201 (554)
.+.+++++....+ .....+.|+++....|+|||++||+|+|+|+.+.+..-.........++..+++.++|+.+|.|
T Consensus 114 a~sf~kD~ad~ye---~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~ 190 (401)
T KOG2838|consen 114 ANSFLKDFADGYE---RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHS 190 (401)
T ss_pred hhHHHHHHhhhhh---eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHH
Confidence 4667777776633 3455677888887889999999999999999988764322222222233348899999999999
Q ss_pred HhcCceecCch--hhHHHHHHHhchhc
Q 008777 202 MYSSTLSTTTP--TALLDVLMAADKFE 226 (554)
Q Consensus 202 iYtg~l~i~~~--~~v~~LL~aAd~l~ 226 (554)
+|||+.-.... .|+.-|-.++.-||
T Consensus 191 l~tgEfgmEd~~fqn~diL~QL~edFG 217 (401)
T KOG2838|consen 191 LITGEFGMEDLGFQNSDILEQLCEDFG 217 (401)
T ss_pred HHhcccchhhcCCchHHHHHHHHHhhC
Confidence 99998765431 34444444444444
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.48 E-value=0.00017 Score=53.10 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=33.8
Q ss_pred CceeEEEEEECCcEEEEcccCCCcccceEEEEEeeecccCCCccccccccccceeecc---CceeecCCC
Q 008777 441 GRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYK 507 (554)
Q Consensus 441 ~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~m~ 507 (554)
+|..|++++++++||++||+.. .+.....+. | +.||+ +|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~---------------~~~~~~~~~-v-----~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGT---------------DNGGSSSND-V-----WVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCccc---------------CCCCcccce-e-----EEEECCCCEEeecCCCC
Confidence 5788999999999999999810 011112334 4 89999 999999885
No 36
>smart00612 Kelch Kelch domain.
Probab=97.40 E-value=0.00013 Score=52.44 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=25.0
Q ss_pred eeecc---CceeecCCCCceeeeceeeecc
Q 008777 494 ARIKP---TEEYVSKYKGNYTFTGGKAVGY 520 (554)
Q Consensus 494 E~YdP---~W~~va~m~~~~~~~g~~~~g~ 520 (554)
|+||| +|+.+++|+.+|..++++++++
T Consensus 18 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 18 EVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred EEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 99999 9999999999999999888764
No 37
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.0011 Score=64.60 Aligned_cols=92 Identities=16% Similarity=0.295 Sum_probs=76.5
Q ss_pred EEEEE--EEEEeehhhccccChHhHHhhcCCCc--ccCccEEEEecCCCCHHHHHHHHHHHhcCceecCc-hhhHHHHHH
Q 008777 146 TVLRV--KTVHISSPILAAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLM 220 (554)
Q Consensus 146 V~l~v--~~f~aHr~ILaa~S~yFramf~~~~~--Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~-~~~v~~LL~ 220 (554)
|.+.| ..|..++.=|.....+|++||.+++. -..++.|-| |=+|.-|..+|+||-.|.+.+.. ...+.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 34555 46999999999999999999999763 233456777 68999999999999988877543 167889999
Q ss_pred HhchhcccchHHHHhhhhcc
Q 008777 221 AADKFEVASCMRYCSRLLRN 240 (554)
Q Consensus 221 aAd~l~i~~L~~~C~~~L~~ 240 (554)
=|.+|.++.|.+.|...+..
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhh
Confidence 99999999999999998776
No 38
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.20 E-value=0.00073 Score=56.87 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=64.5
Q ss_pred EEEEE--EEEEeehhhcc-ccChHhHHhhcCC---CcccCccEEEEecCCCCHHHHHHHHHHHhc-CceecCchhhHHHH
Q 008777 146 TVLRV--KTVHISSPILA-AKSPFFYKLFSNG---MRESEQRYVTLRIHASEEAALMELLNFMYS-STLSTTTPTALLDV 218 (554)
Q Consensus 146 V~l~v--~~f~aHr~ILa-a~S~yFramf~~~---~~Es~~~~I~L~~~~v~~~~f~~lL~fiYt-g~l~i~~~~~v~~L 218 (554)
|+|.| +.|.+-+..|. ....+|.+|+.+. .....+..+-| |-+|..|+.||+|+.+ +.+.......+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 56677 46999998887 5567999999974 33445667777 6899999999999999 77776533678999
Q ss_pred HHHhchhcccch-HHHH
Q 008777 219 LMAADKFEVASC-MRYC 234 (554)
Q Consensus 219 L~aAd~l~i~~L-~~~C 234 (554)
+.-|.+|+++.| ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 7766
No 39
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.10 E-value=0.0018 Score=71.10 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=70.5
Q ss_pred ceeeecccc-------cccccccccceeEeeecCcCceeeccCCCceeEEEEEECCcEEEEcccCCCc-ccceEEEEE--
Q 008777 404 RAYKYRPVK-------VVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMD-QQSSFHCFG-- 473 (554)
Q Consensus 404 ~~~~~~~~~-------~Ve~ydp~~~~w~~~d~~~~~W~~l~p~~r~~~~~~vl~g~lYviGG~~~~~-~~rs~~~y~-- 473 (554)
.+|+.++.. .+..||+.+++|....+..+ .|.+|.+|.+++.|.++|++||.+... ..+.++.||
T Consensus 124 ~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~-----~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~ 198 (482)
T KOG0379|consen 124 KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD-----PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE 198 (482)
T ss_pred eEEEEccccCCCCChhheEeccCCCCcEEEecCcCC-----CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccc
Confidence 355555543 44555555555555443332 458999999999999999999987644 577788887
Q ss_pred ------------------------------eeeccc-CCCccccccccccceeecc---Cceee---cCCCCceeeecee
Q 008777 474 ------------------------------LFLGMQ-EKGSVSFAVDYEFAARIKP---TEEYV---SKYKGNYTFTGGK 516 (554)
Q Consensus 474 ------------------------------~~gG~~-~~~~l~s~V~~~~~E~YdP---~W~~v---a~m~~~~~~~g~~ 516 (554)
++||.+ +.-.++.+ -++|- +|... ..++.+|..+-.+
T Consensus 199 ~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~------~~ldl~~~~W~~~~~~g~~p~~R~~h~~~ 272 (482)
T KOG0379|consen 199 TSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDV------HILDLSTWEWKLLPTGGDLPSPRSGHSLT 272 (482)
T ss_pred cccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecce------EeeecccceeeeccccCCCCCCcceeeeE
Confidence 356666 33345554 67777 77744 4667889888777
Q ss_pred eec
Q 008777 517 AVG 519 (554)
Q Consensus 517 ~~g 519 (554)
+.|
T Consensus 273 ~~~ 275 (482)
T KOG0379|consen 273 VSG 275 (482)
T ss_pred EEC
Confidence 444
No 40
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.02 E-value=0.00094 Score=67.84 Aligned_cols=88 Identities=11% Similarity=0.283 Sum_probs=73.3
Q ss_pred EEEEeehhhccccChHhHHhhcCCCcccC-ccEEEEecCCCCHHHHHHHHHHHhcCceecCchhhHHHHHHHhchhcccc
Q 008777 151 KTVHISSPILAAKSPFFYKLFSNGMRESE-QRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVAS 229 (554)
Q Consensus 151 ~~f~aHr~ILaa~S~yFramf~~~~~Es~-~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~LL~aAd~l~i~~ 229 (554)
+.|.|.+-+|-..=.||+..+.....+++ ..+|.|.. .-+-.+|+=+++|+......++. .||..||.-|++|+|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHH
Confidence 46999999999999999999965332222 22344442 47889999999999998888988 89999999999999999
Q ss_pred hHHHHhhhhcc
Q 008777 230 CMRYCSRLLRN 240 (554)
Q Consensus 230 L~~~C~~~L~~ 240 (554)
|++.|..|+.+
T Consensus 92 Lve~cl~y~~~ 102 (317)
T PF11822_consen 92 LVEECLQYCHD 102 (317)
T ss_pred HHHHHHHHHHH
Confidence 99999999977
No 41
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.62 E-value=0.0037 Score=51.85 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=56.4
Q ss_pred EEEeehhhccccChHhHHhhcCCC--cccCccEEEEecCCCCHHHHHHHHHHH-----hcCc-e-----ecCchhhHHHH
Q 008777 152 TVHISSPILAAKSPFFYKLFSNGM--RESEQRYVTLRIHASEEAALMELLNFM-----YSST-L-----STTTPTALLDV 218 (554)
Q Consensus 152 ~f~aHr~ILaa~S~yFramf~~~~--~Es~~~~I~L~~~~v~~~~f~~lL~fi-----Ytg~-l-----~i~~~~~v~~L 218 (554)
+|-..|- +|.-|+-.|+||+|+. .|...++|.++ ++...+++.+.+|+ |++. . +|.+ +.+++|
T Consensus 28 efiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp-emaleL 103 (112)
T KOG3473|consen 28 EFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP-EMALEL 103 (112)
T ss_pred EEEEeeh-hhhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCCH-HHHHHH
Confidence 5666554 3566999999999864 45667889999 99999999999998 6665 2 3445 899999
Q ss_pred HHHhchhc
Q 008777 219 LMAADKFE 226 (554)
Q Consensus 219 L~aAd~l~ 226 (554)
|.||++|.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999885
No 42
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.57 E-value=0.0037 Score=61.45 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=58.9
Q ss_pred cceeEeeecCcCceeeccC-----CCceeEEEEEECCcEEEEcccCCCc--ccceEEEEEeeecccCCCccccccccccc
Q 008777 421 QQCVVYLDLKREECAHLFP-----AGRIYSQAFHLGGQGFFLSAHCNMD--QQSSFHCFGLFLGMQEKGSVSFAVDYEFA 493 (554)
Q Consensus 421 ~~~w~~~d~~~~~W~~l~p-----~~r~~~~~~vl~g~lYviGG~~~~~--~~rs~~~y~~~gG~~~~~~l~s~V~~~~~ 493 (554)
.+++..+|.++.-|...++ .+|..|..++.+|++|++||+++.- ..+..
T Consensus 215 c~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndL------------------------ 270 (392)
T KOG4693|consen 215 CDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDL------------------------ 270 (392)
T ss_pred cceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcce------------------------
Confidence 3567789999999998765 8899999999999999999997631 12222
Q ss_pred eeecc---Cceeec---CCCCceeeeceeeeccc
Q 008777 494 ARIKP---TEEYVS---KYKGNYTFTGGKAVGYR 521 (554)
Q Consensus 494 E~YdP---~W~~va---~m~~~~~~~g~~~~g~~ 521 (554)
-++|| .|+.++ +.|.+|....++++|+|
T Consensus 271 y~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~k 304 (392)
T KOG4693|consen 271 YCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGK 304 (392)
T ss_pred eecccccchheeeeccCCCCCcccceeEEEECCE
Confidence 56677 788775 56677777788888877
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.50 E-value=0.0018 Score=47.36 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=24.8
Q ss_pred CceeEEEEEEC-CcEEEEcccCCCcccceEEEEEeeecccCCCccccccccccceeecc---CceeecCCCC
Q 008777 441 GRIYSQAFHLG-GQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKG 508 (554)
Q Consensus 441 ~r~~~~~~vl~-g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~m~~ 508 (554)
+|.+|+++.++ +.+|++||.+... ..++.+ +.||+ +|+.+++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-----------------~~~~d~------~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-----------------SPLNDL------WIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-----------------EE---E------EEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-----------------cccCCE------EEEECCCCEEEECCCCCC
Confidence 58889999985 8999999974321 123444 88998 9999988873
No 44
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.33 E-value=0.013 Score=64.30 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=72.3
Q ss_pred eeEeeecCcCceeeccC-----CCceeEEEEEECCcEEEEcccCC-CcccceEEEEE-----------------------
Q 008777 423 CVVYLDLKREECAHLFP-----AGRIYSQAFHLGGQGFFLSAHCN-MDQQSSFHCFG----------------------- 473 (554)
Q Consensus 423 ~w~~~d~~~~~W~~l~p-----~~r~~~~~~vl~g~lYviGG~~~-~~~~rs~~~y~----------------------- 473 (554)
....+|.....|..... .+|..|.+++++.+||++||.+. ...+..+++||
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 35667777777876643 78999999999999999999874 44456677776
Q ss_pred ---------eeecccCCC-ccccccccccceeecc---Cceeec---CCCCceeeeceeeeccc
Q 008777 474 ---------LFLGMQEKG-SVSFAVDYEFAARIKP---TEEYVS---KYKGNYTFTGGKAVGYR 521 (554)
Q Consensus 474 ---------~~gG~~~~~-~l~s~V~~~~~E~YdP---~W~~va---~m~~~~~~~g~~~~g~~ 521 (554)
++||.+..+ .+..+ -.||+ +|..+. +-|.||.+|+.++++.+
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl------~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~ 226 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDL------HIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNK 226 (482)
T ss_pred EEEECCEEEEECCccCcccceeee------eeeccccccceecccCCCCCCCCCCceEEEECCe
Confidence 467877666 55664 99999 999864 77789999999887765
No 45
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=96.23 E-value=0.0059 Score=44.74 Aligned_cols=46 Identities=4% Similarity=-0.050 Sum_probs=34.0
Q ss_pred CCcEEEEcccCCCcccceEEEEEeeecccCCCccccccccccceeecc---CceeecCCCCceeeeceeee
Q 008777 451 GGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAV 518 (554)
Q Consensus 451 ~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va~m~~~~~~~g~~~~ 518 (554)
|+++|++||.+. .+...++.+ -+||| +|+.++++|.+|..|.++++
T Consensus 1 g~~~~vfGG~~~----------------~~~~~~nd~------~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD----------------DGGTRLNDV------WVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC----------------CCCCEecCE------EEEECCCCEEEECCCCCCCccceEEEEC
Confidence 578899998752 011223443 78888 89999999999999998864
No 46
>PF13854 Kelch_5: Kelch motif
Probab=95.95 E-value=0.015 Score=41.25 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCCceeEEEEEECCcEEEEcccCC--CcccceEEEEEe
Q 008777 439 PAGRIYSQAFHLGGQGFFLSAHCN--MDQQSSFHCFGL 474 (554)
Q Consensus 439 p~~r~~~~~~vl~g~lYviGG~~~--~~~~rs~~~y~~ 474 (554)
|.+|..|+++++++++|++||..+ ....+.+..|++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l 39 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDL 39 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEEC
Confidence 568999999999999999999974 444556666653
No 47
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.62 E-value=0.028 Score=48.31 Aligned_cols=73 Identities=8% Similarity=0.197 Sum_probs=53.9
Q ss_pred EEEEeehhhccccChHhHHhhcCCCccc-CccEEEEecCCCCHHHHHHHHHHHhcCce-----------e--------cC
Q 008777 151 KTVHISSPILAAKSPFFYKLFSNGMRES-EQRYVTLRIHASEEAALMELLNFMYSSTL-----------S--------TT 210 (554)
Q Consensus 151 ~~f~aHr~ILaa~S~yFramf~~~~~Es-~~~~I~L~~~~v~~~~f~~lL~fiYtg~l-----------~--------i~ 210 (554)
.+|.+.+.+. ..|..++.|+.+.-.+. ....|.|+ +++..+|+.+++|++.-.- + ++
T Consensus 12 ~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d 88 (104)
T smart00512 12 EVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKID 88 (104)
T ss_pred CEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCC
Confidence 4799999877 57999999998633222 22467776 9999999999999974311 1 23
Q ss_pred chhhHHHHHHHhchhcc
Q 008777 211 TPTALLDVLMAADKFEV 227 (554)
Q Consensus 211 ~~~~v~~LL~aAd~l~i 227 (554)
. +.+.+|+.||++|+|
T Consensus 89 ~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 89 Q-ETLFELILAANYLDI 104 (104)
T ss_pred H-HHHHHHHHHHHhhCC
Confidence 3 578999999999875
No 48
>smart00612 Kelch Kelch domain.
Probab=94.59 E-value=0.052 Score=38.47 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=25.1
Q ss_pred cceeEeeecCcCceeeccC--CCceeEEEEEECC
Q 008777 421 QQCVVYLDLKREECAHLFP--AGRIYSQAFHLGG 452 (554)
Q Consensus 421 ~~~w~~~d~~~~~W~~l~p--~~r~~~~~~vl~g 452 (554)
.+..+.||+.+++|..+++ .+|.++++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4556678888888888776 8899999988875
No 49
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=94.57 E-value=0.085 Score=52.18 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=56.9
Q ss_pred eeeccC--CCceeEEEEEECCcEEEEcccCCC-----cccceEEEEE---------------------------------
Q 008777 434 CAHLFP--AGRIYSQAFHLGGQGFFLSAHCNM-----DQQSSFHCFG--------------------------------- 473 (554)
Q Consensus 434 W~~l~p--~~r~~~~~~vl~g~lYviGG~~~~-----~~~rs~~~y~--------------------------------- 473 (554)
|+.-.. ..|++|+++.+|.+||-+||+|.. ..+-.+|.++
T Consensus 4 WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHt 83 (392)
T KOG4693|consen 4 WTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHT 83 (392)
T ss_pred EEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCce
Confidence 554433 568999999999999999998741 1112233332
Q ss_pred ---------eeecccCCCccccccccccceeecc---Cceeec---CCCCceeeeceeeeccc
Q 008777 474 ---------LFLGMQEKGSVSFAVDYEFAARIKP---TEEYVS---KYKGNYTFTGGKAVGYR 521 (554)
Q Consensus 474 ---------~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~va---~m~~~~~~~g~~~~g~~ 521 (554)
+.||.|.....-++. -+||| +|.... -+|..|-.+.+++.|+.
T Consensus 84 vV~y~d~~yvWGGRND~egaCN~L-----y~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~ 141 (392)
T KOG4693|consen 84 VVEYQDKAYVWGGRNDDEGACNLL-----YEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ 141 (392)
T ss_pred EEEEcceEEEEcCccCccccccee-----eeeccccccccccceeeecCCccCCceeeEECcE
Confidence 467777655455544 89999 998642 56778888888888854
No 50
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.35 E-value=0.082 Score=50.81 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=55.7
Q ss_pred HhHHhhcCC--C-cccCccEEEEecCCCCHHHHHHHHHHHhcCceecCchhhHHHHHHHhchhcccchHHHHhhh
Q 008777 166 FFYKLFSNG--M-RESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRL 237 (554)
Q Consensus 166 yFramf~~~--~-~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~LL~aAd~l~i~~L~~~C~~~ 237 (554)
-..+||.+. | .|..+.-+-| |-+|.-|+.+|+|+-.|++.....-++..+|+.|++|||-+|++..++-
T Consensus 35 MLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 35 MLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred HHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhhh
Confidence 456788763 2 3444555665 6899999999999999999865547899999999999999999988873
No 51
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.099 Score=48.55 Aligned_cols=87 Identities=10% Similarity=0.181 Sum_probs=63.1
Q ss_pred EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCcee---------------cCc----
Q 008777 151 KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLS---------------TTT---- 211 (554)
Q Consensus 151 ~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~---------------i~~---- 211 (554)
+.|.+-..+. ..|..+++++...--......|.|+ .|...+|+.+|+|++.-+-. ++.
T Consensus 15 ~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 15 EIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred ceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 3577766655 5588888887642111111357776 89999999999999873311 111
Q ss_pred -----hhhHHHHHHHhchhcccchHHHHhhhhcc
Q 008777 212 -----PTALLDVLMAADKFEVASCMRYCSRLLRN 240 (554)
Q Consensus 212 -----~~~v~~LL~aAd~l~i~~L~~~C~~~L~~ 240 (554)
..++.+|+.||++|+|+.|..+|++.+..
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~ 125 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVAN 125 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 15789999999999999999999998776
No 52
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.20 E-value=0.44 Score=51.18 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.0
Q ss_pred cCcCceeeccC---------CCceeEEEEEECCcEEEEcccCC
Q 008777 429 LKREECAHLFP---------AGRIYSQAFHLGGQGFFLSAHCN 462 (554)
Q Consensus 429 ~~~~~W~~l~p---------~~r~~~~~~vl~g~lYviGG~~~ 462 (554)
..+.+|..+-| -+|..|.-.+.|++.|++||..|
T Consensus 115 asRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaN 157 (830)
T KOG4152|consen 115 ASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAN 157 (830)
T ss_pred hhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccc
Confidence 34667877744 57999999999999999999743
No 53
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=92.10 E-value=0.34 Score=50.99 Aligned_cols=90 Identities=17% Similarity=0.267 Sum_probs=66.2
Q ss_pred EEEEE--EEEEeehhhcccc--ChHhHHhhcCCCcccCccE--EEEecCCCCHHHHHHHHHHHhcCceecCchhhHHH-H
Q 008777 146 TVLRV--KTVHISSPILAAK--SPFFYKLFSNGMRESEQRY--VTLRIHASEEAALMELLNFMYSSTLSTTTPTALLD-V 218 (554)
Q Consensus 146 V~l~v--~~f~aHr~ILaa~--S~yFramf~~~~~Es~~~~--I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~-L 218 (554)
|.|.| +.|.-.+.=|+-. =.+|.++|++.|.-.+... |-| |=+|+.|..||+|+-||++++.. ..... +
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g-~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASG-VFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCcc-Cchhhhh
Confidence 44666 4577777666543 3699999998776544433 555 68999999999999999999976 34444 4
Q ss_pred HHHhchhcccchHH---HHhhhhc
Q 008777 219 LMAADKFEVASCMR---YCSRLLR 239 (554)
Q Consensus 219 L~aAd~l~i~~L~~---~C~~~L~ 239 (554)
+.-|.+|+|.+|.. +|+.-+.
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~F~ 112 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEELFD 112 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCccccc
Confidence 44899999999886 5666544
No 54
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=91.75 E-value=0.31 Score=51.14 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=57.5
Q ss_pred eeEeeecCcCceeecc----CCCceeEEEEEEC-CcEEEEcccCC------------------------------Ccccc
Q 008777 423 CVVYLDLKREECAHLF----PAGRIYSQAFHLG-GQGFFLSAHCN------------------------------MDQQS 467 (554)
Q Consensus 423 ~w~~~d~~~~~W~~l~----p~~r~~~~~~vl~-g~lYviGG~~~------------------------------~~~~r 467 (554)
....|+.+.++|..+. |.+|+.|+++++- |.+|+.||-.. ....|
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 3446889999999884 3889999988877 89999999532 22334
Q ss_pred eEEEEE-------eeecccCCCc----cccccccccceeecc---CceeecCC---CCceeeec
Q 008777 468 SFHCFG-------LFLGMQEKGS----VSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTG 514 (554)
Q Consensus 468 s~~~y~-------~~gG~~~~~~----l~s~V~~~~~E~YdP---~W~~va~m---~~~~~~~g 514 (554)
|.|+.- ++||+.+..+ ++- | -++|- +|+.+.+- |++|+.+.
T Consensus 179 SGHRMvawK~~lilFGGFhd~nr~y~YyND-v-----y~FdLdtykW~Klepsga~PtpRSGcq 236 (521)
T KOG1230|consen 179 SGHRMVAWKRQLILFGGFHDSNRDYIYYND-V-----YAFDLDTYKWSKLEPSGAGPTPRSGCQ 236 (521)
T ss_pred ccceeEEeeeeEEEEcceecCCCceEEeee-e-----EEEeccceeeeeccCCCCCCCCCCcce
Confidence 444443 5788743221 233 3 67777 99998873 35676664
No 55
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=90.61 E-value=1.4 Score=34.00 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=40.5
Q ss_pred EEEEE---EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhc
Q 008777 146 TVLRV---KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYS 204 (554)
Q Consensus 146 V~l~v---~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYt 204 (554)
|+|.. +.|.+.+.++. .|..++.|+.+.-.+.. .|.|+ +++...|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 44544 57999988875 69999999986333222 67777 9999999999999964
No 56
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.04 E-value=0.77 Score=47.46 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=51.3
Q ss_pred ceeEeeecC--cCceeeccC---CCceeEEEEEECCcEEEEcccCCCcccceEEEEEeeecccCCCccccccccccceee
Q 008777 422 QCVVYLDLK--REECAHLFP---AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARI 496 (554)
Q Consensus 422 ~~w~~~d~~--~~~W~~l~p---~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~E~Y 496 (554)
..|..+|++ ..+|+.++. ..|-....++++|+||+.||...... .+... ++.+ -+|
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~-~~~~~------------~nd~------Y~y 118 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS-SSPQV------------FNDA------YRY 118 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC-CCceE------------eeee------EEe
Confidence 467777765 457998865 88999999999999999999733211 11111 2333 899
Q ss_pred cc---CceeecCCCCceeeeceeee
Q 008777 497 KP---TEEYVSKYKGNYTFTGGKAV 518 (554)
Q Consensus 497 dP---~W~~va~m~~~~~~~g~~~~ 518 (554)
|| +|+.+.-. .|+-..|..++
T Consensus 119 ~p~~nsW~kl~t~-sP~gl~G~~~~ 142 (381)
T COG3055 119 DPSTNSWHKLDTR-SPTGLVGASTF 142 (381)
T ss_pred cCCCChhheeccc-cccccccceeE
Confidence 99 99988654 33335554433
No 57
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=88.85 E-value=0.16 Score=46.63 Aligned_cols=32 Identities=3% Similarity=-0.053 Sum_probs=28.6
Q ss_pred hhhhhHHHhhhhhhhCCCceeccceeeecccC
Q 008777 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (554)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (554)
.||+.+|++|++||++++.++.+|+++|+|++
T Consensus 115 ~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 115 ASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred CcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 59999999999999985559999999999975
No 58
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=88.81 E-value=0.31 Score=50.21 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=103.7
Q ss_pred EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCceecCc-hhhHHHHHHHhchhcccc
Q 008777 151 KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVAS 229 (554)
Q Consensus 151 ~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~-~~~v~~LL~aAd~l~i~~ 229 (554)
..+.+|+.+|+..|+.|..+....-..+..+.+.+. .++...+..+..++|.. ++.-+ ..-...++.+...+.++.
T Consensus 36 ~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~ 112 (319)
T KOG1778|consen 36 DLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQ 112 (319)
T ss_pred hhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccC
Confidence 369999999999999999887665222333455665 78889999999999998 33222 245677888888999999
Q ss_pred hHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhc
Q 008777 230 CMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVL 290 (554)
Q Consensus 230 L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl 290 (554)
++.-|...+..--++..++...+.++..+ ....|..++...+...|..... ++.+.
T Consensus 113 ~~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H~~-t~~~~ 168 (319)
T KOG1778|consen 113 PKADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLHLQ-TEKWF 168 (319)
T ss_pred ccccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhc-ccCce
Confidence 99999888876236888999999999888 7888999999999998888877 65544
No 59
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.70 E-value=0.79 Score=49.30 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.9
Q ss_pred eeecCcCceee-----ccCCCceeEEEEEECCcEEEEccc
Q 008777 426 YLDLKREECAH-----LFPAGRIYSQAFHLGGQGFFLSAH 460 (554)
Q Consensus 426 ~~d~~~~~W~~-----l~p~~r~~~~~~vl~g~lYviGG~ 460 (554)
.+|..+-.|.. ++|.+|.-|.+.++|+++|++||.
T Consensus 234 ~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGW 273 (830)
T KOG4152|consen 234 TLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGW 273 (830)
T ss_pred EEecceeecccccccCCCCCCcccccceeecceeEEecce
Confidence 46666666764 456899999999999999999996
No 60
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=88.43 E-value=0.15 Score=52.74 Aligned_cols=89 Identities=11% Similarity=-0.006 Sum_probs=59.4
Q ss_pred CCCCcceeEEEEE---EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCceecCchhh
Q 008777 138 PAWSMDLSTVLRV---KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTA 214 (554)
Q Consensus 138 ~~~~~~~DV~l~v---~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~ 214 (554)
+..+.-.|+++.+ +-|.|||..|+++|.+|..-+..-+. ...+|+-. .+-+.+|..+++|+|-..-.+-. +.
T Consensus 144 t~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~--~v~~~~f~~flk~lyl~~na~~~-~q 218 (516)
T KOG0511|consen 144 TFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAH--RVILSAFSPFLKQLYLNTNAEWK-DQ 218 (516)
T ss_pred cccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhh--hhhHhhhhHHHHHHHHhhhhhhh-hH
Confidence 4455667888887 24899999999999988765543221 22344323 67889999999999977322222 33
Q ss_pred HHHHHHHhchhcccchH
Q 008777 215 LLDVLMAADKFEVASCM 231 (554)
Q Consensus 215 v~~LL~aAd~l~i~~L~ 231 (554)
-.+|+.+..+|+++.|.
T Consensus 219 ynallsi~~kF~~e~l~ 235 (516)
T KOG0511|consen 219 YNALLSIEVKFSKEKLS 235 (516)
T ss_pred HHHHHhhhhhccHHHhH
Confidence 45666666666665544
No 61
>PF13964 Kelch_6: Kelch motif
Probab=87.59 E-value=0.8 Score=33.32 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=24.3
Q ss_pred eceeeecccccccccccccceeEeeecCcCceeeccC
Q 008777 403 ERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP 439 (554)
Q Consensus 403 ~~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p 439 (554)
..||+.++.... ....+.+++||+.+++|..+++
T Consensus 12 ~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 12 GKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred CEEEEECCCCCC---CCccccEEEEcCCCCcEEECCC
Confidence 357777775321 3456778889999999998877
No 62
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.29 E-value=0.4 Score=38.88 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=28.5
Q ss_pred hhHHHHHHHhchhcccchHHHHhhhhcccccCcccHH
Q 008777 213 TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESAL 249 (554)
Q Consensus 213 ~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~ 249 (554)
..+.+|+.||++|+|+.|.+.|++++.. .+...+.-
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~-~i~gks~e 49 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIAN-MIKGKSPE 49 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHH-HHTTS-HH
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHH-HhcCCCHH
Confidence 6899999999999999999999999877 45444333
No 63
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=87.16 E-value=0.87 Score=47.92 Aligned_cols=41 Identities=20% Similarity=0.065 Sum_probs=34.3
Q ss_pred ceeEeeecCcCceeeccC-----CCceeEEEEEE-CCcEEEEcccCC
Q 008777 422 QCVVYLDLKREECAHLFP-----AGRIYSQAFHL-GGQGFFLSAHCN 462 (554)
Q Consensus 422 ~~w~~~d~~~~~W~~l~p-----~~r~~~~~~vl-~g~lYviGG~~~ 462 (554)
|-+.+||..+.+|+.+.| .+|++++.++. .|.||+.||++.
T Consensus 207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK 253 (521)
T KOG1230|consen 207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSK 253 (521)
T ss_pred eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhH
Confidence 445568888889998865 78999999998 999999999853
No 64
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=1.8 Score=38.12 Aligned_cols=89 Identities=15% Similarity=0.266 Sum_probs=60.7
Q ss_pred EEEEeehhhccccChHhHHhhcCCCcccCccEEEEecCCCCHHHHHHHHHHHhcCceecCc-------------------
Q 008777 151 KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT------------------- 211 (554)
Q Consensus 151 ~~f~aHr~ILaa~S~yFramf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~------------------- 211 (554)
+.|.+.+.+ |-+|-..+.|+... .+. .+.++...+...+|+.+++|+-..+-..++
T Consensus 12 e~F~vd~~i-AerSiLikN~l~d~-~~~---n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~ 86 (158)
T COG5201 12 EIFRVDENI-AERSILIKNMLCDS-TAC---NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRF 86 (158)
T ss_pred cEEEehHHH-HHHHHHHHHHhccc-ccc---CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHH
Confidence 346665543 56777778877542 222 233333489999999999999643222111
Q ss_pred -----hhhHHHHHHHhchhcccchHHHHhhhhcccccCc
Q 008777 212 -----PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTC 245 (554)
Q Consensus 212 -----~~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~ 245 (554)
.+++.++..+|++|.++.|.++|+..+.+ .+..
T Consensus 87 Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivae-mirg 124 (158)
T COG5201 87 FMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAE-MIRG 124 (158)
T ss_pred HHHhhHHHHHHHHHhhccccchHHHHHHHHHHHH-HHcc
Confidence 15678999999999999999999998877 3443
No 65
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=85.08 E-value=0.34 Score=44.66 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=27.8
Q ss_pred hhhhhhHHHhhhhhhhCCCceeccceeeecccC
Q 008777 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (554)
Q Consensus 63 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (554)
..||+.+|++|++||++. ++.+|+++|+|.+
T Consensus 123 ~~~G~~~fi~~~~Le~~~--yl~dD~l~Irc~v 153 (154)
T cd03781 123 LGFGYPKFISHEDLKKRN--YIKDDAIFLRASV 153 (154)
T ss_pred CccchhHeeEHHHHhhCC--cccCCEEEEEEEe
Confidence 359999999999999876 9999999999975
No 66
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=84.61 E-value=1.7 Score=31.52 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=28.8
Q ss_pred ceeeecccccccccccccceeEeeecCcCceeeccC--CCceeEEEEE
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP--AGRIYSQAFH 449 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p--~~r~~~~~~v 449 (554)
.+|+.++... +. ....+....||+.+.+|+.+.. .+|..|++++
T Consensus 3 ~~~vfGG~~~-~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 3 KLYVFGGYDD-DG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred EEEEECCcCC-CC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 3566666432 11 2233455568888888998854 8899999876
No 67
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=84.26 E-value=0.33 Score=43.71 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=30.5
Q ss_pred hhhhhhHHHhhhhhhhCCCceeccceeeecccCCCCC
Q 008777 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNMPDTE 99 (554)
Q Consensus 63 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (554)
.+||+.+|++|++|++....++.+|+++++|.+.+..
T Consensus 102 ~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 102 KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred CccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 4799999999999975443588999999999987643
No 68
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=82.92 E-value=0.36 Score=44.02 Aligned_cols=31 Identities=3% Similarity=0.099 Sum_probs=27.9
Q ss_pred hhhhhhHHHhhhhhhhCCCceeccceeeecccC
Q 008777 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (554)
Q Consensus 63 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (554)
..||+.+|++|++|+++. ++.+|+++|+|.+
T Consensus 116 ~~~G~~~fi~~~~Le~~~--yl~dD~l~I~c~V 146 (147)
T cd03776 116 KGFGYVEFAHIEDLLQRG--FVKNDTLLIKIEV 146 (147)
T ss_pred CCeeEceeeEHHHhhhCC--CccCCEEEEEEEE
Confidence 369999999999999886 8999999999975
No 69
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=79.88 E-value=0.97 Score=46.34 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=49.7
Q ss_pred ccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCChhhhhcc---cccCcc
Q 008777 242 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAV---LASDDL 306 (554)
Q Consensus 242 ~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~~~l~~L---L~sd~L 306 (554)
.++++|++.|+--++.. ..+.|.+.|+.|+..|+.+|+...-.+..|+.+.+..| +...+|
T Consensus 71 ~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el 134 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEEL 134 (317)
T ss_pred cCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccH
Confidence 58999999999877776 78999999999999999999983446677888877766 444444
No 70
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=77.30 E-value=2.2 Score=30.22 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=22.1
Q ss_pred ceeeecccccccccccccceeEeeecCcCceeeccC
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP 439 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p 439 (554)
.+|+.++... .....++++.||+.+++|..+++
T Consensus 13 ~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 13 KIYVIGGYDG---NNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp EEEEEEEBES---TSSBEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEeeecc---cCceeeeEEEEeCCCCEEEEcCC
Confidence 5777776543 23356677778888888887764
No 71
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=75.84 E-value=8.6 Score=38.84 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=54.7
Q ss_pred CCceeEEEEEECCcEEEEcccCCCc-------------------------------------ccceEEEEEeeecccCCC
Q 008777 440 AGRIYSQAFHLGGQGFFLSAHCNMD-------------------------------------QQSSFHCFGLFLGMQEKG 482 (554)
Q Consensus 440 ~~r~~~~~~vl~g~lYviGG~~~~~-------------------------------------~~rs~~~y~~~gG~~~~~ 482 (554)
.+-.+|-+..-++.+|++|||.-.+ .+-.-+-|-++||+....
T Consensus 153 dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 153 DGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred CCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 7788888888899999999983100 001113444688884221
Q ss_pred --c-------cccccccccceeeccCceeecCCCCceeeeceeeecccccCCCcCce
Q 008777 483 --S-------VSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTA 530 (554)
Q Consensus 483 --~-------l~s~V~~~~~E~YdP~W~~va~m~~~~~~~g~~~~g~~~~~~~~~~~ 530 (554)
+ |.. ...++.|+=-|+|+ +..+..|+..|+..=.|.-|++||=..
T Consensus 233 QKRm~C~~V~Ldd-~~I~ie~~E~P~Wt--~dI~hSrtWFGgs~G~G~~Li~iP~e~ 286 (337)
T PF03089_consen 233 QKRMECNTVSLDD-DGIHIEEREPPEWT--GDIKHSRTWFGGSMGKGSALIGIPSEG 286 (337)
T ss_pred eeeeeeeEEEEeC-CceEeccCCCCCCC--CCcCcCccccccccCCceEEEEECCCC
Confidence 1 111 12344466666997 456777888887766666777777543
No 72
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=71.36 E-value=1.6 Score=40.08 Aligned_cols=32 Identities=6% Similarity=0.009 Sum_probs=27.7
Q ss_pred hhhhhHHHhhhhhhhCCCceeccceeeecccC
Q 008777 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (554)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (554)
.||+.+|++|++||++++.++.+|+++|++.+
T Consensus 116 ~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 116 ASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred CcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 48999999999999875569999999998753
No 73
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=66.98 E-value=2.7 Score=37.22 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=26.7
Q ss_pred hhhhhhHHHhhhhhhhCCCceecc--ceeeecccC
Q 008777 63 ADWARNRKRRREEIKKDTVDVLVQ--REQILQCNM 95 (554)
Q Consensus 63 ~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~~~~ 95 (554)
.+||+.+|++|++|++++ ++.+ |+.+++|.+
T Consensus 97 ~~wG~~~Fi~~~~L~~~g--fl~~~~D~l~i~~~v 129 (132)
T cd03773 97 ECWGYNRFFRLDLLINEG--YLLPENDTLILRFSV 129 (132)
T ss_pred CCcCHHHhccHHHHhhCC--CcCCCCCEEEEEEEE
Confidence 359999999999998765 8877 999999976
No 74
>PLN02772 guanylate kinase
Probab=66.21 E-value=10 Score=40.42 Aligned_cols=62 Identities=5% Similarity=0.041 Sum_probs=42.1
Q ss_pred CCceeEEEEEECCcEEEEcccCCCcccceEEEEEeeecccCCCccccccccccceeecc---Cceee---cCCCCceeee
Q 008777 440 AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYV---SKYKGNYTFT 513 (554)
Q Consensus 440 ~~r~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~E~YdP---~W~~v---a~m~~~~~~~ 513 (554)
.++.++.++++|+++|++||.+... .+++.| -+||+ +|..- ..-|.+|-.|
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~------------------~~~~~v-----~i~D~~t~~W~~P~V~G~~P~~r~Gh 79 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGN------------------TLSIGV-----QILDKITNNWVSPIVLGTGPKPCKGY 79 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCc------------------cccceE-----EEEECCCCcEecccccCCCCCCCCcc
Confidence 5677799999999999999865422 112223 55666 55543 3557788888
Q ss_pred ceeeecccccC
Q 008777 514 GGKAVGYRNLF 524 (554)
Q Consensus 514 g~~~~g~~~~~ 524 (554)
.+++++.-.+.
T Consensus 80 Sa~v~~~~ril 90 (398)
T PLN02772 80 SAVVLNKDRIL 90 (398)
T ss_pred eEEEECCceEE
Confidence 88888765554
No 75
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=66.05 E-value=4.3 Score=38.76 Aligned_cols=30 Identities=3% Similarity=-0.047 Sum_probs=27.0
Q ss_pred hhhhhHHHhhhhhhhCCCceeccceeeecccC
Q 008777 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (554)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (554)
.||+.+|++|++|+++. ++.+|+++|++.+
T Consensus 154 ~~G~~~Fi~~~~Le~~~--ylkdD~l~Irv~v 183 (186)
T cd03777 154 ASGCPVFVAQTVLENGT--YIKDDTIFIKVIV 183 (186)
T ss_pred CCCchheeEHHHhccCC--cEeCCEEEEEEEE
Confidence 58999999999999887 9999999999854
No 76
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=65.38 E-value=1.9 Score=39.12 Aligned_cols=32 Identities=3% Similarity=0.035 Sum_probs=27.8
Q ss_pred hhhhhhhHHHhhhhhhhCCCceeccceeeecccC
Q 008777 62 IADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (554)
Q Consensus 62 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (554)
..+||+.+|++|++|+++. ++.+|+++|+|.+
T Consensus 117 ~~~~G~~~fi~~~~L~~~g--fl~dD~l~I~~~v 148 (149)
T cd00270 117 NIGFGYPEFVPLEKLESRG--YVKDDTLFIKVEV 148 (149)
T ss_pred CCCcCcceEeEHHHhccCC--CEeCCEEEEEEEE
Confidence 4579999999999999775 8899999999875
No 77
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=61.30 E-value=3.3 Score=37.07 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=29.2
Q ss_pred hhhhhhhHHHhhhhhhhCCCceeccceeeecccCCC
Q 008777 62 IADWARNRKRRREEIKKDTVDVLVQREQILQCNMPD 97 (554)
Q Consensus 62 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 97 (554)
..+||+.+|+++++|++....++.+|+.+|+|.+..
T Consensus 97 ~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~ 132 (137)
T cd03772 97 ENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA 132 (137)
T ss_pred CCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence 347999999999999754334899999999998753
No 78
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=61.20 E-value=29 Score=32.31 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=70.4
Q ss_pred CCcceeEEEEE-E-EEEeehhhccccChHhHHhhcCCCccc----CccEEEEecCCCCHHHHHHHHHHHhcCceecCchh
Q 008777 140 WSMDLSTVLRV-K-TVHISSPILAAKSPFFYKLFSNGMRES----EQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPT 213 (554)
Q Consensus 140 ~~~~~DV~l~v-~-~f~aHr~ILaa~S~yFramf~~~~~Es----~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~ 213 (554)
+|...=|.+.| + -|.--|--|..-+.-|-.-|...-++. ...--.+- +-+|.-|..+|+|+-.|++-++. -
T Consensus 17 ~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklvl~~-l 93 (210)
T KOG2715|consen 17 NGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLVLNK-L 93 (210)
T ss_pred CCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhhhhh-h
Confidence 44444455666 3 477788888888866666665432221 11122332 68899999999999999999887 5
Q ss_pred hHHHHHHHhchhcccchHHHHhhhhcc
Q 008777 214 ALLDVLMAADKFEVASCMRYCSRLLRN 240 (554)
Q Consensus 214 ~v~~LL~aAd~l~i~~L~~~C~~~L~~ 240 (554)
.-..+|.-|++|.+++|..+..+.+..
T Consensus 94 ~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 94 SEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hhhccchhhhccCChHHHHHHHHHHHH
Confidence 667899999999999999888777765
No 79
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=56.77 E-value=13 Score=39.25 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=66.0
Q ss_pred hhHHHHHHHhchhcccchHHHHhhhhcccccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCC
Q 008777 213 TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNL 292 (554)
Q Consensus 213 ~~v~~LL~aAd~l~i~~L~~~C~~~L~~l~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L 292 (554)
+||..++.+|..|+++.|...|..|+.+ |+-.++.-. +...|.+.+ +.+++. .+.|...
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr------nA~~lL~~~-------sFn~LSk~s-------L~e~l~-RDsFfAp 206 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR------NADQLLEDP-------SFNRLSKDS-------LKELLA-RDSFFAP 206 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc------CHHhhhcCc-------chhhhhHHH-------HHHHHh-hhcccch
Confidence 7888999999999999999999999987 344444322 222233222 233444 4555555
Q ss_pred ChhhhhcccccCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHhhh
Q 008777 293 PLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRF-PYMTCRKLKKV 357 (554)
Q Consensus 293 ~~~~l~~LL~sd~L~V~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~IRf-~lls~~~L~~~ 357 (554)
....+.++.+=..-+. .+-+..++..++-. .-.+ .+||..||- ++++|+.+.+.
T Consensus 207 E~~IFlAv~~W~~~Ns---ke~~k~~~~~VRLP-------Lm~l-teLLnvVRPsGllspD~iLDA 261 (620)
T KOG4350|consen 207 ELKIFLAVRSWHQNNS---KEASKVLLELVRLP-------LMTL-TELLNVVRPSGLLSPDTILDA 261 (620)
T ss_pred HHHHHHHHHHHHhcCc---hhhHHHHHHHHhhh-------hccH-HHHHhccCcccCcCHHHHHHH
Confidence 5555555444332221 23344555555532 1123 578888886 45677777653
No 80
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.63 E-value=11 Score=39.39 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=29.8
Q ss_pred ceeEeeecCcCceeecc---CCCceeEEEEEECC-cEEEEcccC
Q 008777 422 QCVVYLDLKREECAHLF---PAGRIYSQAFHLGG-QGFFLSAHC 461 (554)
Q Consensus 422 ~~w~~~d~~~~~W~~l~---p~~r~~~~~~vl~g-~lYviGG~~ 461 (554)
+..++|||..++|+.+. |.+...+.++.+++ ++|+.||++
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn 156 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVN 156 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEEEEcccc
Confidence 44556667777776663 46677888889998 899999974
No 81
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=55.38 E-value=19 Score=29.87 Aligned_cols=82 Identities=11% Similarity=0.184 Sum_probs=48.0
Q ss_pred HHHHHHhchhcccchHHHHhhhhccccc------------CcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhH---
Q 008777 216 LDVLMAADKFEVASCMRYCSRLLRNLPM------------TCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYK--- 280 (554)
Q Consensus 216 ~~LL~aAd~l~i~~L~~~C~~~L~~l~l------------~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~--- 280 (554)
.+++..|..|+++.|.+.|.+|+.. ++ +.+....++.--+.. ..+-..+.+++.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~-nf~~v~~~~~f~~L~~~~l~~iL~~~~l~--v~~E~~v~~av~~W~~~~~~~r~ 78 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK-NFNEVSKSDEFLELPFDQLIEILSSDDLN--VSSEDDVFEAVLRWLKHNPENRE 78 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH-THHHHTTSHHHHCS-HHHHHHHHHTSS----ECTCCCHHHHHHHHHHCTHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH-HHHHHccchhhhcCCHHHHHHHHhccccc--cccHHHHHHHHHHHHHhCHHHHH
Confidence 5789999999999999999999876 33 333344444322110 01224677888888875543
Q ss_pred ----hhhccchhhcCCChhhhhccc
Q 008777 281 ----DISKFQEEVLNLPLAGIEAVL 301 (554)
Q Consensus 281 ----~v~~~~~~fl~L~~~~l~~LL 301 (554)
.+++ .=.|..|+.+.+...+
T Consensus 79 ~~~~~Ll~-~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 79 EHLKELLS-CIRFPLLSPEELQNVV 102 (103)
T ss_dssp TTHHHHHC-CCHHHCT-HHHHHHCC
T ss_pred HHHHHHHH-hCCcccCCHHHHHHHH
Confidence 3333 3455556666655443
No 82
>PLN02772 guanylate kinase
Probab=51.75 E-value=26 Score=37.39 Aligned_cols=55 Identities=13% Similarity=0.011 Sum_probs=39.5
Q ss_pred eceeeecccccccccccccceeEeeecCcCceeecc-----CCCceeEEEEEEC-CcEEEEccc
Q 008777 403 ERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLF-----PAGRIYSQAFHLG-GQGFFLSAH 460 (554)
Q Consensus 403 ~~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~-----p~~r~~~~~~vl~-g~lYviGG~ 460 (554)
+.+|++++.+. +.+.++...+||+.+.+|..-. |.+|-.|.+++++ ++|+++++.
T Consensus 35 dk~yv~GG~~d---~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 35 DKTYVIGGNHE---GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CEEEEEcccCC---CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 45787776432 2234567778888888888643 4889999999995 679999853
No 83
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=49.75 E-value=46 Score=32.63 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=59.3
Q ss_pred EEE-EEEEeehhh--ccccChHhHHhhcCCCc--ccCccEEEEecCCCCHHHHHHHHHHHhcCceecCc-hhhHHHHHHH
Q 008777 148 LRV-KTVHISSPI--LAAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMA 221 (554)
Q Consensus 148 l~v-~~f~aHr~I--Laa~S~yFramf~~~~~--Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~-~~~v~~LL~a 221 (554)
+.| ++++.|+.- .+-.-....+||++... ...+...-| +=+-..|+.||+|+-|..+.+.+ ..++..|..-
T Consensus 13 lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rE 89 (221)
T KOG2723|consen 13 LNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVRE 89 (221)
T ss_pred eccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHHH
Confidence 444 566666543 33334456677776322 222344555 56778999999999996665544 1578899999
Q ss_pred hchhcccchHHHHhhhhc
Q 008777 222 ADKFEVASCMRYCSRLLR 239 (554)
Q Consensus 222 Ad~l~i~~L~~~C~~~L~ 239 (554)
|++|+++.+...+.+-..
T Consensus 90 A~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 90 AEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred HHHHccccHHHHHhcccc
Confidence 999999988877655443
No 84
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=48.68 E-value=28 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=23.0
Q ss_pred ceeeecccccccccccccceeEeeecCcCceeeccC
Q 008777 404 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP 439 (554)
Q Consensus 404 ~~~~~~~~~~Ve~ydp~~~~w~~~d~~~~~W~~l~p 439 (554)
.+|++++. .-.......+....||+.+++|..+.+
T Consensus 13 kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 13 KIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCc-ccCCCCcccceeEEEECCCCEEeecCC
Confidence 57777775 011123456677788999999988775
No 85
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=43.58 E-value=24 Score=35.88 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=55.6
Q ss_pred eEEEEE--EEEEeehhhccccC-hHhHHhhcCCCc---ccCccEEEEecCCCCHHHHHHHHHHHhcCceecCchhhHHHH
Q 008777 145 STVLRV--KTVHISSPILAAKS-PFFYKLFSNGMR---ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDV 218 (554)
Q Consensus 145 DV~l~v--~~f~aHr~ILaa~S-~yFramf~~~~~---Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~L 218 (554)
-++..+ -.|-..+.+|.+.- .-.-.||.+++. .+..++..+. ++++..+|++||+|--||.+...+.-.|.+|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 344444 35777777776532 223445555331 1223345553 4899999999999999999987665678889
Q ss_pred HHHhchhccc
Q 008777 219 LMAADKFEVA 228 (554)
Q Consensus 219 L~aAd~l~i~ 228 (554)
-+|+|+|.|+
T Consensus 176 rEACDYLlip 185 (438)
T KOG3840|consen 176 REACDYLLVP 185 (438)
T ss_pred HhhcceEEee
Confidence 8998888765
No 86
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=40.40 E-value=24 Score=35.14 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=22.1
Q ss_pred cccccceeEeeecCcCceeeccCCCceeEEEEEECCcEEEEcccC
Q 008777 417 ELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHC 461 (554)
Q Consensus 417 ydp~~~~w~~~d~~~~~W~~l~p~~r~~~~~~vl~g~lYviGG~~ 461 (554)
|||.++++.-++..++.|.. .+++.-+|.+.++||..
T Consensus 51 yD~~tn~~rpl~v~td~FCS--------gg~~L~dG~ll~tGG~~ 87 (243)
T PF07250_consen 51 YDPNTNTFRPLTVQTDTFCS--------GGAFLPDGRLLQTGGDN 87 (243)
T ss_pred EecCCCcEEeccCCCCCccc--------CcCCCCCCCEEEeCCCC
Confidence 55555555555555554443 33445568888999873
No 87
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=33.99 E-value=39 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=28.9
Q ss_pred cC-cccHHHHHhccccchhhhchHHHHHHHHHHHHHh
Q 008777 243 MT-CESALLYLDLPSSVLMADAVQPLTDTAKQFLAAR 278 (554)
Q Consensus 243 l~-~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~n 278 (554)
++ .+++..++.+|..+ +++.|.+.|.+++.++
T Consensus 78 ~~~~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 44 88999999999999 9999999999999876
No 88
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=33.75 E-value=75 Score=34.57 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=36.2
Q ss_pred ccCcccHHHHHhccccchhhhchHHHHHHHHHHHHHhhHhhhccchhhcCCCh
Q 008777 242 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPL 294 (554)
Q Consensus 242 ~l~~~n~~~il~lA~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~~fl~L~~ 294 (554)
.+..+|++.++..|.+| ..+.|.+.|.+||..+... ..+|+.|+.
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~----~naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMA----DNAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCC----hHHHHHHHH
Confidence 57899999999999999 8999999999999987543 344555543
No 89
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=33.19 E-value=21 Score=31.72 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.9
Q ss_pred hhhhhhhHHHhhhhhhhC----CCceeccceeeeccc
Q 008777 62 IADWARNRKRRREEIKKD----TVDVLVQREQILQCN 94 (554)
Q Consensus 62 ~~~~~~~~~~~r~~~~~~----~~~~~~~~~~~~~~~ 94 (554)
..+||+.+|++|++|++. +..++.+|+.+|++-
T Consensus 96 ~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~ 132 (134)
T cd03775 96 DKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVY 132 (134)
T ss_pred CCCCChhHcccHHHHcccccCCCCceeECCEEEEEEE
Confidence 347999999999999842 124778888888653
No 90
>PHA02629 A-type inclusion body protein; Provisional
Probab=31.49 E-value=37 Score=24.93 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=16.2
Q ss_pred CCCCCCCCCCchhhhhhhhhH
Q 008777 49 LPDSKSDGDACSSIADWARNR 69 (554)
Q Consensus 49 ~~~~~~~~~~~~s~~~~~~~~ 69 (554)
+.|+...|.||+|+-++-|++
T Consensus 14 d~gng~~gngc~s~c~ferk~ 34 (61)
T PHA02629 14 DGGNGNGGNGCTSSCEFERKI 34 (61)
T ss_pred ccCCCCCCCCccchhHhhHHH
Confidence 457788899999987776644
No 91
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=29.30 E-value=1.2e+02 Score=24.59 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.1
Q ss_pred HHHHHHhchhcccchHHHHhhhhcc
Q 008777 216 LDVLMAADKFEVASCMRYCSRLLRN 240 (554)
Q Consensus 216 ~~LL~aAd~l~i~~L~~~C~~~L~~ 240 (554)
.+++.+|+.|+.+.|.+.|.+|+.+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHH
Confidence 3577888999999999999998765
No 92
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=23.98 E-value=86 Score=34.38 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=18.6
Q ss_pred CCCceeEEEEEECCc--EEEEccc
Q 008777 439 PAGRIYSQAFHLGGQ--GFFLSAH 460 (554)
Q Consensus 439 p~~r~~~~~~vl~g~--lYviGG~ 460 (554)
|.....|+.+|.+.+ +||.||+
T Consensus 371 P~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 371 PKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred cceeecceeeEecCcceEEEecCe
Confidence 455678999999987 9999996
No 93
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=23.84 E-value=60 Score=27.27 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=26.1
Q ss_pred hhhhhhhhHHHhhhhhhhCCCceeccceeeecccC
Q 008777 61 SIADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (554)
Q Consensus 61 s~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (554)
...+||+.+++++++|++.. .+.+++.+++|.+
T Consensus 93 ~~~~~G~~~fi~~~~l~~~~--~~~~d~l~i~~~v 125 (126)
T cd00121 93 KGSGWGFPKFISWDDLEDSY--YLVDDSLTIEVEV 125 (126)
T ss_pred CCCCCChHHeeEHHHhccCC--cEECCEEEEEEEE
Confidence 34579999999999999875 2677888887754
No 94
>PF13799 DUF4183: Domain of unknown function (DUF4183)
Probab=23.77 E-value=47 Score=27.37 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=26.2
Q ss_pred ceeeeceeeecccccCCCcCceEeecCC-------------ccccccceeeeeeee
Q 008777 509 NYTFTGGKAVGYRNLFGIPWTAFMADDS-------------IYFINGNLHLRAELT 551 (554)
Q Consensus 509 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 551 (554)
++.++-.+-+..-+-++||=+.|.+|+- ..||||||.-..--|
T Consensus 5 r~fyt~~~~~~~~~~~tI~a~~f~dD~g~~~t~~~~~~sY~NLyINGvLQ~~~~yt 60 (84)
T PF13799_consen 5 RYFYTNTAELALGGTTTIPAPSFTDDAGNAVTAFPAVNSYYNLYINGVLQPGSLYT 60 (84)
T ss_pred EEEEEccccccccCceEeechhhccCCCCeeEeecccceEEEEEEEEEecCCcceE
Confidence 3444444444444556777777766543 569999998654433
No 95
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=21.68 E-value=45 Score=29.63 Aligned_cols=28 Identities=7% Similarity=0.315 Sum_probs=25.3
Q ss_pred CcCceEeecCCccccccceeeeeeeeee
Q 008777 526 IPWTAFMADDSIYFINGNLHLRAELTIR 553 (554)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (554)
++|..+.+++|.|-+||.|-++++++|.
T Consensus 106 i~~~~L~~~~sgyl~~D~l~Ie~~V~~~ 133 (137)
T cd03772 106 MTWSEVTDPEKGFIEDDTITLEVYVQAD 133 (137)
T ss_pred eEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence 7898888888988889999999999985
Done!