Query 008778
Match_columns 554
No_of_seqs 224 out of 1361
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 11:29:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 3.2E-34 1.1E-38 296.5 24.4 392 12-527 25-435 (451)
2 3o7q_A L-fucose-proton symport 100.0 5.9E-33 2E-37 285.9 29.9 368 11-518 22-425 (438)
3 4gc0_A D-xylose-proton symport 100.0 2.5E-30 8.7E-35 270.4 25.6 424 13-535 10-472 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.8E-28 6.2E-33 256.4 28.2 412 36-530 36-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.6E-28 5.3E-33 247.6 16.6 327 31-488 17-354 (375)
6 2cfq_A Lactose permease; trans 99.9 3.3E-26 1.1E-30 233.9 15.0 358 33-526 27-400 (417)
7 2xut_A Proton/peptide symporte 99.9 1.9E-24 6.6E-29 227.7 25.7 151 35-192 34-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 8E-13 2.7E-17 135.8 10.0 176 331-528 27-209 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.4 2.3E-12 8E-17 134.0 12.4 172 333-526 14-197 (491)
10 3o7q_A L-fucose-proton symport 99.3 7.8E-12 2.7E-16 127.9 11.0 181 337-524 31-228 (438)
11 2gfp_A EMRD, multidrug resista 99.3 3.6E-12 1.2E-16 127.6 5.9 168 339-528 7-177 (375)
12 2xut_A Proton/peptide symporte 99.2 3.2E-11 1.1E-15 126.5 11.2 171 332-524 12-197 (524)
13 2cfq_A Lactose permease; trans 98.9 4.9E-09 1.7E-13 106.4 9.3 136 49-191 259-397 (417)
14 4gc0_A D-xylose-proton symport 98.7 4.8E-07 1.6E-11 93.6 17.7 165 31-198 294-468 (491)
15 2g9p_A Antimicrobial peptide l 35.6 7.5 0.00026 20.0 -0.1 14 67-80 2-15 (26)
16 2knc_B Integrin beta-3; transm 22.3 1.8E+02 0.0062 20.7 5.2 19 504-522 11-29 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.2e-34 Score=296.50 Aligned_cols=392 Identities=15% Similarity=0.050 Sum_probs=285.3
Q ss_pred chhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHH
Q 008778 12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
.+|..+....+..+..+.. +.++.+.|.+.+++ .+..+.+++.+...++..+ +++.|++.||+|||++++++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3455555555555554444 67788889999999 9999999988777787765 8999999999999999999999999
Q ss_pred HHHHHHHH----HhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHH
Q 008778 90 VGYGAQWL----VVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 90 ~~~~~~~~----a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~ 164 (554)
++.+++++ + ++++.++++|+++|++.+...+....++.|++| ++|++++|+...+.++|.++++++.+
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 104 AVMLFMGFVPWAT-------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHCHHHH-------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhhhhcc-------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 7 789999999999999999999999999999998 56999999999999999988888877
Q ss_pred hhcCCCh-HHHHHHHHHHHHHHHH-HHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhH
Q 008778 165 ALFADDP-AKFLFMLAIVPFVVCL-GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI 242 (554)
Q Consensus 165 ~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
.+....+ |++.+++..+..++.. +..+++++.+.+...
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 216 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL---------------------------------------- 216 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC----------------------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCC----------------------------------------
Confidence 7665555 7766666554444333 333333333221100
Q ss_pred HHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCC
Q 008778 243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED 322 (554)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (554)
++++ +.+. . .+++.+ + ++++....++
T Consensus 217 --------------------------~~~~---------~~~~-------~----~~~~~~-~-------~~~~~~~~~~ 242 (451)
T 1pw4_A 217 --------------------------PPIE---------EYKN-------D----YPDDYN-E-------KAEQELTAKQ 242 (451)
T ss_dssp --------------------------CSCT---------TTCC-------C-------------------------CCTH
T ss_pred --------------------------CChh---------hhcc-------c----ccccch-h-------hhhccccccc
Confidence 0000 0000 0 000000 0 0000000111
Q ss_pred chHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhH--hhhcC
Q 008778 323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYF--IKRAG 397 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~--g~r~~ 397 (554)
...++++++|.+|.+.+..++..........+.+.+.++ +|+++. ....+...++.++++++.|++.||+ ++|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 124778899999988888777766666777888888887 788754 3467788899999999999999999 87764
Q ss_pred CCchhHHHHHHHHHH-HHHHHHHhc---cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhh-hH
Q 008778 398 TPRPIWNAASQILMA-VGYILMAVA---LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPL-GS 472 (554)
Q Consensus 398 ~~~~~~~~~~~~l~~-~~~~l~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~ 472 (554)
. ..+..+.. ++.+++... +.....+..++.|++.+...+....++.|.+|++++|+++|+.+....+ +.
T Consensus 323 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 323 T------GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp H------HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 3 33333333 444443332 2224456667788887777777888999999999999999999999999 99
Q ss_pred HHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHH
Q 008778 473 FLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAA 527 (554)
Q Consensus 473 ~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~ 527 (554)
.+ +|.+.|.+.|..+ |+..|++.+++.+++.++.+++.+
T Consensus 397 ~~-~~~~~g~l~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 397 VA-ASAIVGYTVDFFG---------------WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HH-HHHHHHHHHHSSC---------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcC---------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98 8999999999886 899999999888888777665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.9e-33 Score=285.93 Aligned_cols=368 Identities=11% Similarity=0.051 Sum_probs=267.9
Q ss_pred cchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~ 88 (554)
+++|..+.......+..+.. ..++.+.|.+++++|++.++.+++.+.+.++..+ .++.|++.||+|||++++++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 44555555555555555554 6788889999999999999999988888888765 999999999999999999999999
Q ss_pred HHHHHHH---HHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHH
Q 008778 89 LVGYGAQ---WLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCS 164 (554)
Q Consensus 89 ~~~~~~~---~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~ 164 (554)
+++.+++ +++ ++++.+++.|+++|++.+...+....++.|++|+ +|++++|+...+.++|..+++++.+
T Consensus 102 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 102 ALGAALFWPAAEI-------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccc-------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 555 7899999999999999999999999999999984 6999999999999999988888777
Q ss_pred hhc-CCCh-------------------------HHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHH
Q 008778 165 ALF-ADDP-------------------------AKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTV 218 (554)
Q Consensus 165 ~l~-~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (554)
.+. ...+ |++.++.......+..+..++.
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~------------------------- 229 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT------------------------- 229 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 665 3221 2322222211111111100000
Q ss_pred HHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccc
Q 008778 219 AIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVV 298 (554)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (554)
+.|++ . ++++
T Consensus 230 -------------------------------------------------~~p~~-~-------~~~~------------- 239 (438)
T 3o7q_A 230 -------------------------------------------------KFPAL-Q-------SDNH------------- 239 (438)
T ss_dssp -------------------------------------------------CCCCC-T-------TTCC-------------
T ss_pred -------------------------------------------------cCCcc-c-------cccc-------------
Confidence 22222 0 0000
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHH-HhHh-CCCcc--hhhHHHH
Q 008778 299 AVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI-GLAL-GYVDV--SIFVSLT 374 (554)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~--~~~~~~~ 374 (554)
+++ ++.+...+.++++++|.+|...+..++..........+.+.+ .++. |+++. ....+..
T Consensus 240 -~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 304 (438)
T 3o7q_A 240 -SDA--------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_dssp -CCS--------------STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred -ccc--------------cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHH
Confidence 000 000112345788899999998888877777677777888888 7775 88754 3466778
Q ss_pred HHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhhhcccccchHHHHHHhhCC
Q 008778 375 SIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAVALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGL 454 (554)
Q Consensus 375 ~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~ 454 (554)
.++..+++++.|++.||+++|+.. ..+.++.+++.+++...+.....+..++.|++.+..++...++..|.+|+
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVL------AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 899999999999999999998754 44555555555554443333445556788888888888888888999975
Q ss_pred cchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHH
Q 008778 455 KYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVG 518 (554)
Q Consensus 455 ~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~ 518 (554)
+ ++.+.++.. ...+++.+ +|.+.|.+.|..++ |+..|++.+++.++.
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~-~~~~~g~l~~~~g~--------------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGI-VTPVMGFVSDAAGN--------------IPTAELIPALCFAVI 425 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHH-HHHHHHHHHHHHTS--------------SGGGGHHHHHHHHHH
T ss_pred c-ccchhhHHH-HHHHHHHH-HHHHHHHHHHHhcc--------------hHHHHHHHHHHHHHH
Confidence 5 888888877 66788888 89999999999864 677787766554443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=2.5e-30 Score=270.41 Aligned_cols=424 Identities=11% Similarity=0.030 Sum_probs=262.4
Q ss_pred hhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCC--------ChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHH
Q 008778 13 KWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNL--------TQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILL 82 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~ 82 (554)
.|.+.+.+.+-.+..|.. ..++...|.++++++. ++++.+++.+.+.+|..+ ++++|+++||+|||++++
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 344444333333334433 4456677888887743 234566777777888866 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccC-----------CCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHh
Q 008778 83 IGSLEGLVGYGAQWLVVSRKI-----------QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKG 150 (554)
Q Consensus 83 ~g~~l~~~~~~~~~~a~~~~~-----------~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~ 150 (554)
++.+++.+++++++++..... -.+++++++++|+++|+|.|...+....+++|+.|+ +|++..++...
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 999999999999885210000 016899999999999999999999999999999985 69999999999
Q ss_pred hhhhhHHHHHHHHHhhcC--------CChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHH
Q 008778 151 YVGLSTAIFTDLCSALFA--------DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVV 222 (554)
Q Consensus 151 ~~~lg~~i~~~l~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (554)
+..+|..+...+...... .++|++.+....++.++.++..++++|+|++...+++.++..+..
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l--------- 240 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL--------- 240 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH---------
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH---------
Confidence 988888665555444332 245777777777777777777777777665432211111111000
Q ss_pred HHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccc
Q 008778 223 ALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVED 302 (554)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (554)
++... ++ +.++ +..
T Consensus 241 ---------------------------------------------~~~~~----~~--~~~~---------------~~~ 254 (491)
T 4gc0_A 241 ---------------------------------------------RKIMG----NT--LATQ---------------AVQ 254 (491)
T ss_dssp ---------------------------------------------HHHHH----HH--HHHH---------------HHH
T ss_pred ---------------------------------------------HHhcC----Cc--hhHH---------------HHH
Confidence 00000 00 0000 000
Q ss_pred hhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHH-HHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHh
Q 008778 303 TVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWIL-FVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGF 379 (554)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~ 379 (554)
...+...++++ .......++.+..... ....+........+..+.+.+.+..+.+... ......++...
T Consensus 255 --~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (491)
T 4gc0_A 255 --EIKHSLDHGRK------TGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINL 326 (491)
T ss_dssp --HHHHHHHHHHH------HTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhhh------hhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHH
Confidence 00000000000 0011222333333332 2333333444444555666677777766432 24456678889
Q ss_pred HhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHH---hc-cCc-hhHHHHHHHHhhhccc-ccchHHHHHHhhC
Q 008778 380 FGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMA---VA-LPG-SLYIGSIIVGLCYGVR-LAVTVPTASELFG 453 (554)
Q Consensus 380 ~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~---~~-~~~-~~~~~~~l~g~~~g~~-~~~~~~~~~~~~~ 453 (554)
++.++.+++.||+|||+.. ..+...+.++.+.+. .. .+. ...+..+++..+++.. .++...+.+|.+|
T Consensus 327 ~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP 400 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 400 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 9999999999999999754 333333444333322 11 222 2222333333333333 3456678899999
Q ss_pred CcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhhhH
Q 008778 454 LKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKNIY 533 (554)
Q Consensus 454 ~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~~~ 533 (554)
.+.|+++.|+....+.+++++ ++.+.+.+.+..... ....+...|++.+++++++.+..+++.+|+|.+.
T Consensus 401 t~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~---------~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 401 NAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLV---------AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp TTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHH---------HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 999999999999999999998 787777665432100 0001456788999999999998888889988765
Q ss_pred HH
Q 008778 534 TK 535 (554)
Q Consensus 534 ~~ 535 (554)
-+
T Consensus 471 Le 472 (491)
T 4gc0_A 471 LE 472 (491)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=1.8e-28 Score=256.37 Aligned_cols=412 Identities=14% Similarity=0.080 Sum_probs=254.7
Q ss_pred cHHHHHHh-----cCCChhhHHHHHHHHHHHHhh-hhhhhhhccc-CCchHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 008778 36 YSDALKTL-----MNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY 108 (554)
Q Consensus 36 ~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr-~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~ 108 (554)
..+.++++ +|++..+.+++.+.+.++..+ +++.|+++|| +|||+++..+.++.+++.++++++ +++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FGA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hhH
Confidence 33445555 999999999987777777765 8999999999 899999999999999999998876 789
Q ss_pred HHHHHHHHHHhchhhHhhhhHHHHHHhhcc-CC--CccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 008778 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RN--RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV 185 (554)
Q Consensus 109 ~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~--rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~ 185 (554)
+.++++|+++|+|.+...+....++.|++| ++ |+.+.++...+.++|..+++++.+.+.+..+|++.+....+..++
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 45 677888888999999988888888887767788888877666655
Q ss_pred HHHHHhhccccCCC-C--Ccc---hhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccc
Q 008778 186 CLGAIFFLRETTPA-S--TVD---EEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPV 259 (554)
Q Consensus 186 ~~~~~~~~~~~~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (554)
..+..++.++...+ . ..+ ++.+.....+..+......++..+. .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~----------------------------~-- 238 (491)
T 4aps_A 189 GLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVV----------------------------M-- 238 (491)
T ss_dssp HHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHH----------------------------H--
T ss_pred HHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHH----------------------------H--
Confidence 55544433222111 1 000 1111111122111100000000000 0
Q ss_pred hhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHH
Q 008778 260 YSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFV 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (554)
.. .+..+ .++... .... ..............++. ..+..+..+....+.+.+
T Consensus 239 ---~~---~~~~~--~~~~~~-~~~~---------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 290 (491)
T 4aps_A 239 ---NL---VGWNS--LPAYIN-LLTI---------------VAIAIPVFYFAWMISSV----KVTSTEHLRVVSYIPLFI 290 (491)
T ss_dssp ---HH---HSSCC--TTHHHH-HHHH---------------HHHHHHHHHHHHHC----------------CTTHHHHHH
T ss_pred ---Hh---ccCcc--cccchh-hhhH---------------HHHHHHHHHHHHHhhcc----cccHHHHHHHHHHHHHHH
Confidence 00 11100 000000 0000 00000000000000000 000011112222333333
Q ss_pred HHHhhhcchhhhhccHHHHHhH-hCCC--cchhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 008778 340 SFLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYI 416 (554)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~ 416 (554)
..++...........++.+.++ .+.+ +.....+...+...++.++.|++.||++||+.. +...+..+..+.++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~~~~~~~~~ 369 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGLMFAGLSFL 369 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHH
Confidence 3333333334455566777765 4554 344566778888899999999999999988643 22233344555555544
Q ss_pred HHHhc----------cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhc
Q 008778 417 LMAVA----------LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDA 486 (554)
Q Consensus 417 l~~~~----------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~ 486 (554)
++... +.....+..++.|++.+...+....++.|.+|++++|++.|+.+....+|..+ +|.+.+.+.|.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~~~~~~~ 448 (491)
T 4aps_A 370 LMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLVTLYNAK 448 (491)
T ss_dssp TTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHGGGGGGS
T ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 33221 22345567778888888888888999999999999999999999999999998 89888887765
Q ss_pred cCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 008778 487 QATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTK 530 (554)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~ 530 (554)
. +...|.+++++++++.++.+++.++.+
T Consensus 449 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 449 S----------------EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp S----------------TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 677888888888777776666554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=1.6e-28 Score=247.58 Aligned_cols=327 Identities=14% Similarity=0.045 Sum_probs=243.4
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
..+....|.+.+++|.|.++.+++.+...++..+ +++.|++.||+|||+++..+..+..++.++.+++ ++++
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 89 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLT 89 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHH
Confidence 5666777889999999999999987777777754 8999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHhchhhHhhhhHHHHHHhhcc-CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 008778 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (554)
Q Consensus 110 ~l~~~r~l~Gig~g~~~~~~~~~i~~~fp-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (554)
.+++.|+++|++.+...+.....+.|++| ++|++++++...+.++|..+++++.+.+.+..+|+..+....+..++..+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 57999999999999999988888877776555676666554443333222
Q ss_pred HHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhhhccc
Q 008778 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (554)
...+ .
T Consensus 170 ~~~~---------------------------------------------------------------------------~ 174 (375)
T 2gfp_A 170 SMAR---------------------------------------------------------------------------W 174 (375)
T ss_dssp CCCC---------------------------------------------------------------------------S
T ss_pred HHHH---------------------------------------------------------------------------H
Confidence 1100 0
Q ss_pred ccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhhhcch
Q 008778 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (554)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
.|++ . ++++ ++++...+.++++++|.+|...+..++.....
T Consensus 175 ~~~~-~-------~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2gfp_A 175 MPET-R-------PVDA-------------------------------PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGI 215 (375)
T ss_dssp SCCC-S-------TTTC-------------------------------CCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc-C-------CCCc-------------------------------ccccHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 1111 0 0000 00001123367888999998887777666555
Q ss_pred hhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHH-HHHHHH--HHHh--
Q 008778 349 LAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQIL-MAVGYI--LMAV-- 420 (554)
Q Consensus 349 ~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l-~~~~~~--l~~~-- 420 (554)
.....+.|.+.++ +|+++. ....+...++..+++++.|++.||++++. ..+..+ ...+.. ....
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T 2gfp_A 216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--------WQSVICCLLAGLLMWIPDWFG 287 (375)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--------HHHHHHHHHTSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhc
Confidence 5666666777665 677643 34667778899999999999999998732 121211 111211 1111
Q ss_pred -ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccC
Q 008778 421 -ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQA 488 (554)
Q Consensus 421 -~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~ 488 (554)
.+.+...+..++.|++.+...+....+..|.+| +++|++.|+.+...+++..+ +|.+.|.+.|..+
T Consensus 288 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 288 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV-LASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-CSTTCTHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-HHHHHHHHhcCCc
Confidence 123345567778899999989999999999997 89999999999999999998 8999999988764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=3.3e-26 Score=233.91 Aligned_cols=358 Identities=12% Similarity=0.090 Sum_probs=219.7
Q ss_pred hhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHHHHHHHH---HHHhhccCCCchH
Q 008778 33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQ---WLVVSRKIQPLSY 108 (554)
Q Consensus 33 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~---~~a~~~~~~~~s~ 108 (554)
++.....+++++|+|..+.+++.+...++..+ ++++|+++||+|||++++++..+++++.... .++ +..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------~~~ 99 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-------PLL 99 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-------HHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 34444446778999999999987777777754 8999999999999999999888776533221 222 111
Q ss_pred -HHHHHHHHHHhchhhHhhhhHHHHHHhhcc---CCCccchHhhHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 008778 109 -WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184 (554)
Q Consensus 109 -~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp---~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 184 (554)
..+...+++.|++.+..++.....+.++.+ ++|+.+.|....+..+|..+++++.+.+.+ .+|+..+++..++.+
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL 178 (417)
T ss_dssp HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 123456777777777766655555666664 357888898887788888887777665543 123333332222111
Q ss_pred HHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHHHHHHHHhhhcccccchhhhh
Q 008778 185 VCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIK 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (554)
+.++..++
T Consensus 179 ~~~~~~~~------------------------------------------------------------------------ 186 (417)
T 2cfq_A 179 ILAVLLFF------------------------------------------------------------------------ 186 (417)
T ss_dssp THHHHSCS------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111000
Q ss_pred hcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCchHHhhhhhhhHHHHHHHHHhh
Q 008778 265 SWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCG 344 (554)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (554)
.+|++ .... ++++. .++ + +++....+.++++++|.+|...+..++.
T Consensus 187 ---~~~~~-~~~~---~~~~~------------~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T 2cfq_A 187 ---AKTDA-PSSA---TVANA------------VGA-N--------------HSAFSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp ---SCCCC-SCSS---CSSSS------------SSS-C--------------CCCCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---cCccc-cccc---ccccc------------ccc-c--------------cccccHHHHHHHhcCCchhhHHHHHHHH
Confidence 11111 0000 00000 000 0 0000112346788899988776654433
Q ss_pred hcchhhhhccHHHHHhHh-CCC---cc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 008778 345 VGTGLAVMNNMGQIGLAL-GYV---DV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILM 418 (554)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~-g~~---~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~ 418 (554)
......+..+.+.++++. +.. .. ....+...++..++.+..|+++||+++|+.. ..+..++++..+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l------~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL------LLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH------HHHHHHHHHHHHHH
Confidence 333333334566666543 221 11 2244566678888999999999999998754 44445555554444
Q ss_pred HhccC-chhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHH-HhhhhhhHHHhhhhHHHHHHhccCCCCCCCCc
Q 008778 419 AVALP-GSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNIL-ILNLPLGSFLFSGLLAGYLYDAQATPTAGGGN 496 (554)
Q Consensus 419 ~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~ 496 (554)
...+. ..+.+..++.+++.+...+....++.|.+|++.+|+++|+. +....+|+.+ +|.+.|.+.|..+
T Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-gp~l~G~l~~~~g-------- 377 (417)
T 2cfq_A 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG-------- 377 (417)
T ss_dssp TTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-HTHHHHTHHHHSH--------
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-hhhhHHHHHHhcC--------
Confidence 33222 23334444556665555555677899999999999999995 8888899998 8999999999765
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 497 TCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 497 ~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
|+..|.+++++.+++.++.+...
T Consensus 378 -------~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 378 -------FQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred -------cHHHHHHHHHHHHHHHHHHHhhh
Confidence 88899998888888777655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=1.9e-24 Score=227.72 Aligned_cols=151 Identities=17% Similarity=0.037 Sum_probs=126.5
Q ss_pred hcHHHHHHhcC------CChhhHHHHHHHHHHHHhh-hhhhhhhcccC-CchHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 008778 35 NYSDALKTLMN------LTQLELNNLSVVKDIGKAF-GLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPL 106 (554)
Q Consensus 35 ~~~~~i~~~~~------~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~-G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~ 106 (554)
.+.+.+++++| ++..+.+++.+.+.++..+ .++.|++.||+ |||+++.++.++.+++.++++++ +
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~ 106 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------E 106 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------S
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------c
Confidence 34445778899 9999999987777777765 89999999999 99999999999999999998887 6
Q ss_pred -hHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHh---hHhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHH
Q 008778 107 -SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGI---LKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV 181 (554)
Q Consensus 107 -s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi---~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~ 181 (554)
+++.+++.|+++|++.+...+.....+.|++|+ +|+++.+. ...+.++|.++++++.+.+.+..+|++.+.+..+
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~ 186 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGV 186 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999999999999999999999999975 68877666 8888899998888887777776778888877776
Q ss_pred HHHHHHHHHhh
Q 008778 182 PFVVCLGAIFF 192 (554)
Q Consensus 182 ~~~~~~~~~~~ 192 (554)
..++..+..++
T Consensus 187 ~~~~~~~~~~~ 197 (524)
T 2xut_A 187 LMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 66555554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=8e-13 Score=135.76 Aligned_cols=176 Identities=16% Similarity=0.056 Sum_probs=134.1
Q ss_pred hhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHH
Q 008778 331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQ 408 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 408 (554)
.+.++...+..+........+...++.+.+++ .++. +...+...++..++.+..|+++||+|||+.+ ..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHHH
Confidence 33444444444444444344455566677777 6643 4477888999999999999999999999755 5666
Q ss_pred HHHHHHHHHHHh----c-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHH
Q 008778 409 ILMAVGYILMAV----A-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYL 483 (554)
Q Consensus 409 ~l~~~~~~l~~~----~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i 483 (554)
++.+++.++... . +.+.+++..++.|++.+...+...+++.|.+++++|+++.|+......+|..+ +|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 666666666544 3 44567788899999999999999999999999999999999999999999998 89999998
Q ss_pred HhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 484 YDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
.+..++ |++.|++.+++.++..++.++..++
T Consensus 179 ~~~~g~--------------w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 179 MAWFND--------------WHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHTCC--------------STTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhcc--------------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 877642 8999999988877766665555444
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.36 E-value=2.3e-12 Score=134.00 Aligned_cols=172 Identities=15% Similarity=0.219 Sum_probs=134.9
Q ss_pred hHHHHHHHHHhhhcchhhhhccHHHHHhH------hCCCcc--hhhHHHHHHHHhHhhHHhhcchhh-HhhhcCCCchhH
Q 008778 333 DFWILFVSFLCGVGTGLAVMNNMGQIGLA------LGYVDV--SIFVSLTSIWGFFGRIISGSVSEY-FIKRAGTPRPIW 403 (554)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr-~g~r~~~~~~~~ 403 (554)
.+|.+....++.....+.....++.+.++ +|.++. +...+...++..+++++.|+++|| +|||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~----- 88 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV----- 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-----
Confidence 45666555555555555566667777654 687754 347788899999999999999999 8999865
Q ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcc--hhhHHHHHHhhhhhhHHHhhhhHH
Q 008778 404 NAASQILMAVGYILMAVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKY--YGLIYNILILNLPLGSFLFSGLLA 480 (554)
Q Consensus 404 ~~~~~~l~~~~~~l~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~l~~p~i~ 480 (554)
..+.++.+++.++.... +...+++..++.|++.+...+...+++.|.+++++ ++.+.++.+...++|..+ +|.+.
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~ 166 (491)
T 4aps_A 89 -FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV 166 (491)
T ss_dssp -HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence 66666667776666554 44567788889999999999999999999999988 778888899999999998 89999
Q ss_pred HHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhH
Q 008778 481 GYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLA 526 (554)
Q Consensus 481 g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~ 526 (554)
+.+.+..+ |++.|++.++..+++.+..++..
T Consensus 167 ~~l~~~~g---------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 167 GAAQEAAG---------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHSC---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh---------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998876 99999998877777766655443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=7.8e-12 Score=127.86 Aligned_cols=181 Identities=14% Similarity=0.055 Sum_probs=127.2
Q ss_pred HHHHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHH
Q 008778 337 LFVSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVG 414 (554)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~ 414 (554)
+...++.............|.+.+++|.++.. ...+...++..++.+..|+++||+|||+.+ ..+.++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~~~~ 104 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHHHHH
Confidence 33333333333334445567777888988653 477888999999999999999999999865 6666666666
Q ss_pred HHHH---Hhc-cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHH-hccCC
Q 008778 415 YILM---AVA-LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLY-DAQAT 489 (554)
Q Consensus 415 ~~l~---~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~-~~~~~ 489 (554)
.++. ... +.+.+++..++.|++.+...+...+++.|.+++++|+.+.|+......+|..+ +|.+.+.+. +..+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHHHTSSCC
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccc
Confidence 6655 433 33466778899999999999999999999999999999999999999999999 899999888 44321
Q ss_pred CCCCC---Ccc-------cccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 490 PTAGG---GNT-------CVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 490 ~~~~~---~~~-------~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
..... ... .....+|++.|++.+++.++..++.++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 000012788888777666655554433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.25 E-value=3.6e-12 Score=127.63 Aligned_cols=168 Identities=11% Similarity=0.113 Sum_probs=129.6
Q ss_pred HHHHhhhcchhhhhccHHHHHhHhCCCcch--hhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 008778 339 VSFLCGVGTGLAVMNNMGQIGLALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYI 416 (554)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~ 416 (554)
...++.......+...++.+.+++|.++.. ...+...++..++.+..|+++||+|||+.+ ..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~ 80 (375)
T 2gfp_A 7 LLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHH
Confidence 333333333444555677777888887643 477888999999999999999999999887 566666666665
Q ss_pred HHHh-ccCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCC
Q 008778 417 LMAV-ALPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGG 495 (554)
Q Consensus 417 l~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~ 495 (554)
+... ++...+++..++.|++.+...+...+++.|.+|+++++++.++......+|..+ +|.+.+.+.+..+
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------- 152 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN------- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH-------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc-------
Confidence 5544 344466777888999999888899999999999999999999999999999998 8999999888765
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 008778 496 NTCVGAHCYRLVFVIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 496 ~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~ 528 (554)
|+..|++.++..++..+...+..++
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 153 --------WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999998887776665544443333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.21 E-value=3.2e-11 Score=126.46 Aligned_cols=171 Identities=16% Similarity=0.144 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHhhhcchhhhhccHHHHHh-HhC------CCcc--hhhHHHHHHHHhHhhHHhhcchhhH-hhhcCCCch
Q 008778 332 VDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALG------YVDV--SIFVSLTSIWGFFGRIISGSVSEYF-IKRAGTPRP 401 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~-g~r~~~~~~ 401 (554)
+.+|.+.+..++.....+....+++.+.+ ++| .++. +...+.+.++..++.+..|+++||+ |||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~--- 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI--- 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 34555555555555555556667777765 467 7654 4477888999999999999999999 998765
Q ss_pred hHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHH---HHhhhhhhHHHhh
Q 008778 402 IWNAASQILMAVGYILMAVAL--PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNI---LILNLPLGSFLFS 476 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~l~~ 476 (554)
..+.++.+++.++....+ ...+++..++.|++.+...+...+++.|.+|+++++++.+. .....++|..+ +
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 89 ---LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred ---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 556666666666655433 34566778889999999889999999999999999776666 88889999998 8
Q ss_pred hhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 008778 477 GLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDIL 524 (554)
Q Consensus 477 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~ 524 (554)
|.+.+.+.+..+ |+..|++.+++.+++.+..++
T Consensus 165 ~~~~~~l~~~~g---------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 165 SLSMPLLLKNFG---------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSTHHHHTSC---------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccc---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988765 999999988877766555433
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.85 E-value=4.9e-09 Score=106.44 Aligned_cols=136 Identities=9% Similarity=0.015 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhh
Q 008778 49 LELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT 127 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~ 127 (554)
.+.+++.....+..+ ..++.|++.||+|||+++..+..+.+++.++.++. ++.+.+++..++.+++.+...+
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~ 331 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHH
Confidence 344554444444443 47899999999999999998888887776665443 5677777777788887776666
Q ss_pred hHHHHHHhhccC-CCccchHhh-HhhhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHh
Q 008778 128 AVLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191 (554)
Q Consensus 128 ~~~~~i~~~fp~-~rg~a~gi~-~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (554)
....++.|.+|+ .||++.|+. ..+.++|..+++.+.+.+.+..+++..+....+..++..+..+
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 777889999986 599999984 7777899888888888777655666666665555555544433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.68 E-value=4.8e-07 Score=93.60 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=103.6
Q ss_pred hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 008778 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (554)
Q Consensus 31 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~ 109 (554)
+....+.|.+.++.+.+..+....+....+... ..++++.+.||+|||+.++.+.....++.+..+....... ++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ 371 (491)
T 4gc0_A 294 NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PGIV 371 (491)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHH
T ss_pred hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc--chHH
Confidence 455667788889999888877765555444444 4889999999999999999999988888877665533321 2222
Q ss_pred HH-HHHHHHHhchhhHhhhhHHHHHHhhccCC-CccchHhhHhhhhhhHHHHHHHHHhhcCCC------hH-HHHHHHHH
Q 008778 110 QM-CVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFADD------PA-KFLFMLAI 180 (554)
Q Consensus 110 ~l-~~~r~l~Gig~g~~~~~~~~~i~~~fp~~-rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~------~~-~~~~~~~~ 180 (554)
.+ .+.-+..+.+.+. .+....+.+|.||.+ |++++|+......+++.+.+.+...+.+.. .+ ..++++++
T Consensus 372 ~~~~~~~~~~~~~~~~-~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSW-GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH-HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 22 2222222222222 245667889999964 999999998888888877665544433221 11 22333444
Q ss_pred HHHHHHHHHHhhccccCC
Q 008778 181 VPFVVCLGAIFFLRETTP 198 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (554)
+..+..+...+++||...
T Consensus 451 ~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHheecCCCC
Confidence 444444444456666543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=35.57 E-value=7.5 Score=19.99 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=10.8
Q ss_pred hhhhhcccCCchHH
Q 008778 67 LAGLASDRIPAPII 80 (554)
Q Consensus 67 ~~G~l~dr~G~r~~ 80 (554)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888899998854
No 16
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.30 E-value=1.8e+02 Score=20.67 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008778 504 YRLVFVIMAMACIVGFGLD 522 (554)
Q Consensus 504 ~~~~f~i~~~~~~~~~~~~ 522 (554)
+..+..+.+++.++++++.
T Consensus 11 ~~Iv~gvi~gilliGllll 29 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAAL 29 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444445555555554443
Done!