Query 008778
Match_columns 554
No_of_seqs 224 out of 1361
Neff 10.1
Searched_HMMs 13730
Date Mon Mar 25 11:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 9.1E-35 6.6E-39 297.4 22.5 406 10-531 20-436 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 3E-25 2.2E-29 222.6 27.4 383 11-531 7-405 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 4.9E-13 3.6E-17 134.5 11.2 152 356-528 48-206 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 98.9 1E-09 7.5E-14 107.7 10.5 143 48-197 258-404 (417)
5 d3proc1 d.52.1.1 (C:6-85) Alph 6.6 2.8E+02 0.021 18.1 3.9 17 37-53 4-20 (80)
6 d2csba2 a.60.2.4 (A:294-350) T 4.8 98 0.0071 17.6 0.5 12 70-81 7-18 (57)
7 d1v54k_ f.23.5.1 (K:) Mitochon 4.4 2.5E+02 0.018 16.1 2.2 21 72-94 5-25 (49)
8 d2yvxa3 f.57.1.1 (A:276-448) M 2.4 8.4E+02 0.062 18.1 4.4 13 65-77 130-142 (173)
9 d1u69a_ d.32.1.7 (A:) Hypothet 2.2 1.5E+02 0.011 22.3 -0.6 16 65-80 100-115 (156)
10 d2e74f1 f.23.25.1 (F:1-32) Pet 2.0 5.4E+02 0.039 12.8 1.7 15 145-159 13-27 (32)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=9.1e-35 Score=297.38 Aligned_cols=406 Identities=15% Similarity=0.051 Sum_probs=277.5
Q ss_pred ccchhHHHHHHHHHHHhhccc-hhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHH
Q 008778 10 SAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE 87 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l 87 (554)
++.||.++..+++..+..... ..++...|.++ |+|+|.+|.+++.+.+.++..+ ++++|+++||+|||+++..+.++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 98 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 98 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 345788777666655544433 67788888765 6899999999988888888765 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhhhhHHHHHHhhccC-CCccchHhhHhhhhhhHHHHHHHHHhh
Q 008778 88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL 166 (554)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~~~~~~~i~~~fp~-~rg~a~gi~~~~~~lg~~i~~~l~~~l 166 (554)
.+++.++++++.... ++++.+++.|++.|++.+..++....++.+++|+ +|++++|+...+.++|..+++.+....
T Consensus 99 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 999999887652110 4688899999999999999999999999999975 599999999999999988877766655
Q ss_pred cC-CChHHHHHHHHHHHH-HHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhHHH
Q 008778 167 FA-DDPAKFLFMLAIVPF-VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244 (554)
Q Consensus 167 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (554)
.. ..+|++.+++..+.. +..++..++.+++|++...
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 213 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL------------------------------------------ 213 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC------------------------------------------
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhccc------------------------------------------
Confidence 44 234555544444333 3333333333333322111
Q ss_pred HHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCCch
Q 008778 245 GILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT 324 (554)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (554)
.+.++ . +++.+ ++.++ +.++....+...
T Consensus 214 -----------------------~~~~~-~------~~~~~-------------~~~~~---------~~~~~~~~~~~~ 241 (447)
T d1pw4a_ 214 -----------------------PPIEE-Y------KNDYP-------------DDYNE---------KAEQELTAKQIF 241 (447)
T ss_dssp -----------------------CSCTT-T------CCC-----------------------------------CCTHHH
T ss_pred -----------------------chhhh-h------hhhcc-------------cchhh---------ccccccchhhHH
Confidence 00000 0 00000 00000 000011112234
Q ss_pred HHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhH-hCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCch
Q 008778 325 IFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRP 401 (554)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~ 401 (554)
.++.++++.+|......++.....+....+.+.+.++ .+++.. ........+...+++++.|++.||+++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 318 (447)
T d1pw4a_ 242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--- 318 (447)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc---
Confidence 5678889999988887777766666777778888765 566643 3467788889999999999999999876532
Q ss_pred hHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhh
Q 008778 402 IWNAASQILMAVGYILMAVA---LPGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGL 478 (554)
Q Consensus 402 ~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~ 478 (554)
........+..++....... +.....+..++.|++.+...+.......|.+|++.+|++.|+.+...++++.+.+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~ 398 (447)
T d1pw4a_ 319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222222222211 122445566677777777777888899999999999999999999888865544899
Q ss_pred HHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 008778 479 LAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 479 i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~ 531 (554)
+.|.+.|..| |+..|++++++.+++.++...+..++++
T Consensus 399 ~~g~~~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 399 IVGYTVDFFG---------------WDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHHSSC---------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---------------hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999987 7889998888888877776666544433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=3e-25 Score=222.55 Aligned_cols=383 Identities=11% Similarity=0.075 Sum_probs=238.8
Q ss_pred cchhHHHHHHHHHHHhhccchhhhhcHHHHHHhcCCChhhHHHHHHHHHHHHhh-hhhhhhhcccCCchHHHHHHHHHHH
Q 008778 11 AGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL 89 (554)
Q Consensus 11 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~dr~G~r~~~~~g~~l~~ 89 (554)
++.|...+..++..+..+. ..+.+...+++++|+|.+|++++.+...++..+ +++.|+++||+|||++++++..+..
T Consensus 7 ~~~~~l~~~~f~~~~~~~~--~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGA--YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3445554444333332222 223333347788999999999988777777765 9999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHH----HHHHHHHHhchhhHhhhhHHHHHHhhcc---CCCccchHhhHhhhhhhHHHHHHH
Q 008778 90 VGYGAQWLVVSRKIQPLSYWQ----MCVFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDL 162 (554)
Q Consensus 90 ~~~~~~~~a~~~~~~~~s~~~----l~~~r~l~Gig~g~~~~~~~~~i~~~fp---~~rg~a~gi~~~~~~lg~~i~~~l 162 (554)
++..+..+. .+... .++.+++.+.+.+...........+..+ +++....+......+.+..+++.+
T Consensus 85 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (417)
T d1pv7a_ 85 VMFAPFFIF-------IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp HTHHHHHHH-------THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccc
Confidence 888887776 33332 3455666666666666555555544443 246777777777777777666666
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhhHhHHHHHHHHHHHHHhHhcCCCCcchhhhH
Q 008778 163 CSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI 242 (554)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
.+.+....+++..........+..++..+..++.+.....
T Consensus 158 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 197 (417)
T d1pv7a_ 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATV---------------------------------------- 197 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCS----------------------------------------
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHhcccccchhh----------------------------------------
Confidence 6655554555554444444444443333322222111100
Q ss_pred HHHHHHHHhhhcccccchhhhhhcccccCCCCCCchhhhhhccccCCCCCCccccccccchhhhHHHHHHhhcCCCCCCC
Q 008778 243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED 322 (554)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (554)
+ + + +++..+....
T Consensus 198 -----------------------------~------~--~------------------------------~~~~~~~~~~ 210 (417)
T d1pv7a_ 198 -----------------------------A------N--A------------------------------VGANHSAFSL 210 (417)
T ss_dssp -----------------------------S------H--H------------------------------HHSCCCCCCH
T ss_pred -----------------------------h------h--h------------------------------hhhhcccccc
Confidence 0 0 0 0000000011
Q ss_pred chHHhhhhhhhHHHHHHHHHhhhcchhhhhccHHHHHhHhCCC----c--chhhHHHHHHHHhHhhHHhhcchhhHhhhc
Q 008778 323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV----D--VSIFVSLTSIWGFFGRIISGSVSEYFIKRA 396 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~--~~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~ 396 (554)
....+.++++..+......................+......+ . .........++..++....+++.||.++|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 290 (417)
T d1pv7a_ 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290 (417)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc
Confidence 1123333344444333333222222222222222222222111 1 122555667888889999999999999887
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHH-hhhhhhHHH
Q 008778 397 GTPRPIWNAASQILMAVGYILMAVAL-PGSLYIGSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILI-LNLPLGSFL 474 (554)
Q Consensus 397 ~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~l 474 (554)
.. ..+..+.+++.+.+...+ .+..++..++.|++.+...+...+++.|.+|+++++++.|+.. ....+|..+
T Consensus 291 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 364 (417)
T d1pv7a_ 291 AL------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp HH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH
T ss_pred ch------hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 54 555566666665555433 4456677788899999988999999999999999999999865 566789998
Q ss_pred hhhhHHHHHHhccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 008778 475 FSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVFVIMAMACIVGFGLDILLAAKTKN 531 (554)
Q Consensus 475 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~l~~~~~~ 531 (554)
+|.+.|++.|..| |+.+|++++++.++..++..+..+++++
T Consensus 365 -~~~~~G~l~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 365 -MSVLAGNMYESIG---------------FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp -HHHHHHHHHHHHC---------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred -HHHHHHHHHHHHC---------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 8999999999987 8999999998888887777776655443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.38 E-value=4.9e-13 Score=134.48 Aligned_cols=152 Identities=18% Similarity=0.097 Sum_probs=119.7
Q ss_pred HHHHhHhCCCcc--hhhHHHHHHHHhHhhHHhhcchhhHhhhcCCCchhHHHHHHHHHHHHHHHHHh-----ccCchhHH
Q 008778 356 GQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIKRAGTPRPIWNAASQILMAVGYILMAV-----ALPGSLYI 428 (554)
Q Consensus 356 ~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~G~l~Dr~g~r~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~ 428 (554)
.++.++.|.++. +...+.+.++..++.++.|+++||+|||+.+ ..+.++.+++.++... .+...+++
T Consensus 48 ~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (447)
T d1pw4a_ 48 MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSIAVMFV 121 (447)
T ss_dssp HHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHhhccccchhhhhHHHHHH
Confidence 345567788754 4578899999999999999999999999865 5555555555554432 24456777
Q ss_pred HHHHHHhhhcccccchHHHHHHhhCCcchhhHHHHHHhhhhhhHHHhhhhHHHHHHhccCCCCCCCCcccccccchHHHH
Q 008778 429 GSIIVGLCYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGYLYDAQATPTAGGGNTCVGAHCYRLVF 508 (554)
Q Consensus 429 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~~~f 508 (554)
..++.|++.|...+....++.|.+++++|+.+.|+.+....+|..+ +|.+.+.+.+..+. |+..|
T Consensus 122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~~--------------w~~~~ 186 (447)
T d1pw4a_ 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAWFND--------------WHAAL 186 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHTCC--------------STTCT
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh-hhhhhhhHhhhhhc--------------ccccc
Confidence 8889999999888999999999999999999999999999999998 89888887777653 88888
Q ss_pred HHHHHHHHHHHHHHHHhHHh
Q 008778 509 VIMAMACIVGFGLDILLAAK 528 (554)
Q Consensus 509 ~i~~~~~~~~~~~~~~l~~~ 528 (554)
++.+.+.++..++.+...++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhHHHHHHHHHHhccc
Confidence 88887777766665555443
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=98.94 E-value=1e-09 Score=107.70 Aligned_cols=143 Identities=11% Similarity=0.072 Sum_probs=108.3
Q ss_pred hhhHHHHHHHHHHHHh-hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhchhhHhh
Q 008778 48 QLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMN 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~-~~~~~G~l~dr~G~r~~~~~g~~l~~~~~~~~~~a~~~~~~~~s~~~l~~~r~l~Gig~g~~~ 126 (554)
..+.+.......++.. ..++.+++.||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------cccchhhHHHHHHHHHHHHHH
Confidence 3344444444444444 47899999999999999999999999998887776 788999999999999999999
Q ss_pred hhHHHHHHhhccC-CCccchHhhH-hhhhhhHHHHHHHHHhhcCCChHHHHHHHHH-HHHHHHHHHHhhccccC
Q 008778 127 TAVLVTCIRNFRR-NRGPVSGILK-GYVGLSTAIFTDLCSALFADDPAKFLFMLAI-VPFVVCLGAIFFLRETT 197 (554)
Q Consensus 127 ~~~~~~i~~~fp~-~rg~a~gi~~-~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 197 (554)
+....++.|.+|+ +|+++.|+.. ...++|..+++++.+.+.+..+++..+++.. +..+..++..+.++.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999985 5999999864 5567888888888888877666665555444 44444455555555443
No 5
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=6.58 E-value=2.8e+02 Score=18.05 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=14.0
Q ss_pred HHHHHHhcCCChhhHHH
Q 008778 37 SDALKTLMNLTQLELNN 53 (554)
Q Consensus 37 ~~~i~~~~~~s~~~~~~ 53 (554)
...|++|+|++..|..-
T Consensus 4 ~~AmqRDLgLt~~qa~~ 20 (80)
T d3proc1 4 KFAMQRDLGIFPTQLPQ 20 (80)
T ss_dssp HHHHHHHHCCCGGGHHH
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 45688999999998776
No 6
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=4.79 E-value=98 Score=17.59 Aligned_cols=12 Identities=17% Similarity=-0.064 Sum_probs=7.5
Q ss_pred hhcccCCchHHH
Q 008778 70 LASDRIPAPIIL 81 (554)
Q Consensus 70 ~l~dr~G~r~~~ 81 (554)
++.||||.|--.
T Consensus 7 klqdrygiredv 18 (57)
T d2csba2 7 KLQDRYGIREDV 18 (57)
T ss_dssp HHHHHHCCCHHH
T ss_pred ehhhhhccHHHH
Confidence 456777766544
No 7
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.41 E-value=2.5e+02 Score=16.13 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=10.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHH
Q 008778 72 SDRIPAPIILLIGSLEGLVGYGA 94 (554)
Q Consensus 72 ~dr~G~r~~~~~g~~l~~~~~~~ 94 (554)
-|||| ..++++...++++...
T Consensus 5 HdKYG--n~vL~~Ga~fc~avW~ 25 (49)
T d1v54k_ 5 HDKYG--NAVLASGATFCVAVWV 25 (49)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHH
T ss_pred ccccC--cEEEecccchhhhhhh
Confidence 36666 3445555545444433
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.42 E-value=8.4e+02 Score=18.08 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.9
Q ss_pred hhhhhhhcccCCc
Q 008778 65 GLLAGLASDRIPA 77 (554)
Q Consensus 65 ~~~~G~l~dr~G~ 77 (554)
+...-.+.+|+|.
T Consensus 130 G~~lPlll~klg~ 142 (173)
T d2yvxa3 130 GAMLPFLLRRLGV 142 (173)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCC
Confidence 3333444455554
No 9
>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.20 E-value=1.5e+02 Score=22.26 Aligned_cols=16 Identities=13% Similarity=0.055 Sum_probs=11.9
Q ss_pred hhhhhhhcccCCchHH
Q 008778 65 GLLAGLASDRIPAPII 80 (554)
Q Consensus 65 ~~~~G~l~dr~G~r~~ 80 (554)
....|++.||||-++.
T Consensus 100 ~~~~G~v~DkFGV~Wq 115 (156)
T d1u69a_ 100 ESACGWCRDKWGISWQ 115 (156)
T ss_dssp ECSTTEEECTTSCEEE
T ss_pred CCCCeEEECCCCCEEE
Confidence 3457999999996553
No 10
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.03 E-value=5.4e+02 Score=12.75 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred hHhhHhhhhhhHHHH
Q 008778 145 SGILKGYVGLSTAIF 159 (554)
Q Consensus 145 ~gi~~~~~~lg~~i~ 159 (554)
.|++..++++|..+.
T Consensus 13 fglifvgwglgalll 27 (32)
T d2e74f1 13 FGLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHh
Done!