BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008779
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 501 bits (1291), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/520 (48%), Positives = 335/520 (64%), Gaps = 32/520 (6%)
Query: 44 FLDCLSMHPDNSSSISQVIYTKYXXXXXXXXXXXAQNLRFSTPNTPKPQVIITPLDVSQV 103
FL C S H N+ + +++YT++ QNLRF + TPKP VI+TP + S +
Sbjct: 7 FLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHI 66
Query: 104 QAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQSGA 163
QA I CSKK G QIR RSGGHD EG+SY+SQVPFVV+DL N+ I +D +TAWV++GA
Sbjct: 67 QATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGA 126
Query: 164 TLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLAADNIVDAHLIDAR 223
TLG++YY I +K++NL ++R +GLAADNI+DAHL++
Sbjct: 127 TLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVD 186
Query: 224 GRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITRTLE-QNATKIV 282
G++LDRKSMG+DLFWAIRGGGG +FG++ AWK++LV VPS T F + + +E K+
Sbjct: 187 GKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLF 246
Query: 283 HKWQYVANNLHEDLVIEVGLIKMN---------SSMVAVFSSLFLGGVDRLLPLMQESFP 333
+KWQ +A +DLV+ I N +++ FSS+F GGVD L+ LM +SFP
Sbjct: 247 NKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFP 306
Query: 334 ELGLKKGDCTEMSWIESV--------HNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSP 385
ELG+KK DC E SWI++ N A F K ++LLDR+A K+
Sbjct: 307 ELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKK----EILLDRSAGK---------KTA 353
Query: 386 FKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNL 445
F K+DYVK+PIPE A I +K YEE+ VL PYGG M EISES PFPHRAG +
Sbjct: 354 FSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIM 413
Query: 446 YKIFYGVSWRGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIG-TNNQGYTSI 504
Y+++Y SW +++HI+W+RS+Y++ TPYVS+NPR AY+NYRDLD+G TN+ +
Sbjct: 414 YELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNY 473
Query: 505 EQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPL 544
QA IWG KYF NF RLV VKT VDP+NFFRNEQSIPPL
Sbjct: 474 TQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/517 (42%), Positives = 304/517 (58%), Gaps = 25/517 (4%)
Query: 32 SSKPADHHDENLFLDCLSMHPDNSSSISQVIYTKYXXXXXXXXXXXAQNLRFSTPNTPKP 91
+ P E FL CL+ + +Y K +N++F + T KP
Sbjct: 1 APPPYAKQVERDFLTCLT-----KDIPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKP 55
Query: 92 QVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVP--FVVIDLINLSKIS 149
IITP + S +QAA+ C ++HG +IRVRSGGHD+EGLSY S+ P F V+D+ + +S
Sbjct: 56 LYIITPTNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVS 115
Query: 150 VDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGL 209
+D K TAWV SGA LG LYY IA S L ++LRK+G
Sbjct: 116 IDGKAATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGT 175
Query: 210 AADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFR 269
AADN++DA ++DA+GRLLDRK+MG+D FWAIRGGGG SFG+V +W+++L+ VP VT F+
Sbjct: 176 AADNVIDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQ 235
Query: 270 ITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLFLGGVDRLLPLMQ 329
+ + +++ A +V KWQ VA L +DL+I + M A+F +L+LG L+ LM
Sbjct: 236 VHKGIKEGAIDLVTKWQTVAPALPDDLMIRI----MAMGQGAMFEALYLGTCKDLVLLMT 291
Query: 330 ESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAK 389
FPELG+ C EM+WIESV + KG DLL N SN K+ K K
Sbjct: 292 ARFPELGMNATHCKEMTWIESVPYIPMGPKGTVRDLL---NRTSN-------IKAFGKYK 341
Query: 390 VDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIF 449
DYV +PIP++ +E I+ + +++ PYGG ++ + ES TPFP R+G L+ I
Sbjct: 342 SDYVLEPIPKSDWEKIFTWLVKP--GAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQ 399
Query: 450 YGVSWRGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGTNN--QGYTSIEQA 507
Y V W G+G + W R +Y +MTPYVSKNPR+AYVNYRDLD+G N ++
Sbjct: 400 YVVYWFGEGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASG 459
Query: 508 SIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPL 544
+WG KYFK NF+RL K +DP ++FRNEQSIPPL
Sbjct: 460 KVWGEKYFKGNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/515 (41%), Positives = 297/515 (57%), Gaps = 28/515 (5%)
Query: 35 PADHHDENLFLDCLSMHPDNSSSISQVIYTKYXXXXXXXXXXXAQNLRFSTPNTPKPQVI 94
PA D FL CL +++Y K +N R+S+P+ KP I
Sbjct: 5 PAAKED---FLGCLV-----KEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYI 56
Query: 95 ITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVP--FVVIDLINLSKISVDA 152
ITP VS +Q+A+ C ++H +IRVRSGGHD+EGLSY S P F V+DL + + VD
Sbjct: 57 ITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDG 116
Query: 153 KQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLAAD 212
K +TAWV SGA LG+LYY I S L ++LRK+G+AA+
Sbjct: 117 KARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAE 176
Query: 213 NIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITR 272
N++D L+DA G+L D+KSMG D FWA+RGGGG SFG+VVAW+++L+ VP TVT F+I++
Sbjct: 177 NVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISK 236
Query: 273 TLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLFLGGVDRLLPLMQESF 332
T+ + A I++KWQ VA L DL+I + + A F +++LG L PLM F
Sbjct: 237 TVSEGAVDIINKWQVVAPQLPADLMIRI----IAQGPKATFEAMYLGTCKTLTPLMSSKF 292
Query: 333 PELGLKKGDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPF-KAKVD 391
PELG+ C EMSWI+S+ + L R+A + L+ + + PF + K D
Sbjct: 293 PELGMNPSHCNEMSWIQSIPFVH----------LGHRDALEDDLLNRQNSFKPFAEYKSD 342
Query: 392 YVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYG 451
YV QP P+ +E I + + + G ++ PYG +S ES TPFPHR G L+ I Y
Sbjct: 343 YVYQPFPKTVWEQILNTWLVKPG-AGIMIFDPYGATISATPESATPFPHRKGVLFNIQYV 401
Query: 452 VSWRGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGTNN--QGYTSIEQASI 509
W G + + W + +Y+YM PYVSKNPR+AY NYRD+D+G N ++ +
Sbjct: 402 NYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKV 461
Query: 510 WGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPL 544
WG KYFK NF+RL K VDP ++FRNEQSIPPL
Sbjct: 462 WGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 354 bits (908), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 198/480 (41%), Positives = 279/480 (58%), Gaps = 29/480 (6%)
Query: 79 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFV 138
QN F KP II P ++ I+C +K + IR+RSGGH +EGLSY S PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 139 VIDLINLSKISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXX 198
+IDL+NL+++S+D + +TAWV+SG+TLG+LYY I + S L
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGG 153
Query: 199 XXXIMLRKFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRL 258
+M RK+GLAADN+VDA LIDA G +LDR++MG+D+FWAIRGGGG +G + AWK++L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 259 VTVPSTVTRFRITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLF 317
+ VP VT FR+T+ + AT ++HKWQ+VA L ED + V L + V + F
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 272
Query: 318 LGGVDRLL-PLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 373
G+ + FPELGL + D EMSW ES LAG + L+ L D A
Sbjct: 273 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 330
Query: 374 NGLVVKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 433
FK KVD K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 331 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 376
Query: 434 SETPFPHRAGNLYKIFYGVSWRGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 491
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 377 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 436
Query: 492 LDIGTNNQG-----YTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLTS 546
LD+G + G +IE + WG YF +N++RL+ KT++DP+N F + QSIPP+ +
Sbjct: 437 LDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 496
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 278/479 (58%), Gaps = 29/479 (6%)
Query: 79 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFV 138
QN F KP II P ++ I+C +K + IR+RSGGH +EGLSY S PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 139 VIDLINLSKISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXX 198
+IDL+NL+++S+D + +TAWV+SG+TLG+LYY I + S L
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGG 153
Query: 199 XXXIMLRKFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRL 258
+M RK+GLAADN+VDA LIDA G +LDR++MG+D+FWAIRGGGG +G + AWK++L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 259 VTVPSTVTRFRITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLF 317
+ VP VT FR+T+ + AT ++HKWQ+VA L ED + V L + V + F
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 272
Query: 318 LGGVDRLL-PLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 373
G+ + FPELGL + D EMSW ES LAG + L+ L D A
Sbjct: 273 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 330
Query: 374 NGLVVKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 433
FK KVD K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 331 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 376
Query: 434 SETPFPHRAGNLYKIFYGVSWRGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 491
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 377 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 436
Query: 492 LDIGTNNQG-----YTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLT 545
LD+G + G +IE + WG YF +N++RL+ KT++DP+N F + QSIPP+
Sbjct: 437 LDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA 495
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 278/479 (58%), Gaps = 29/479 (6%)
Query: 79 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFV 138
QN F KP II P ++ I+C +K + IR+RSGGH +EGLSY S PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 139 VIDLINLSKISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXX 198
+IDL+NL+++S+D + +TAWV+SG+TLG+LYY I + S L
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 153
Query: 199 XXXIMLRKFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRL 258
+M RK+GLAADN+VDA LIDA G +LDR++MG+D+FWAIRGGGG +G + AWK++L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 259 VTVPSTVTRFRITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLF 317
+ VP VT FR+T+ + AT ++HKWQ+VA L ED + V L + V + F
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 272
Query: 318 LGGVDRLL-PLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 373
G+ + FPELGL + D EMSW ES LAG + L+ L D A
Sbjct: 273 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 330
Query: 374 NGLVVKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 433
FK KVD K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 331 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 376
Query: 434 SETPFPHRAGNLYKIFYGVSWRGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 491
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 377 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 436
Query: 492 LDIGTNNQG-----YTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLT 545
LD+G + G +IE + WG YF +N++RL+ KT++DP+N F + QSIPP+
Sbjct: 437 LDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA 495
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 198/481 (41%), Positives = 280/481 (58%), Gaps = 29/481 (6%)
Query: 79 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFV 138
QN F KP II P ++ I+C +K + IR+RSGGH +EGLSY S PF+
Sbjct: 59 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 118
Query: 139 VIDLINLSKISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXX 198
+IDL+NL+++S+D + +TAWV+SG+TLG+LYY I + S L
Sbjct: 119 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 178
Query: 199 XXXIMLRKFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRL 258
+M RK+GLAADN+VDA LIDA G +LDR++MG+D+FWAIRGGGG +G + AWK++L
Sbjct: 179 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 238
Query: 259 VTVPSTVTRFRITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLF 317
+ VP VT FR+T+ + AT ++HKWQ+VA L ED + V L + V + F
Sbjct: 239 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 297
Query: 318 LGGVDRLL-PLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 373
G+ + FPELGL + D EMSW ES LAG + L+ L D A
Sbjct: 298 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 355
Query: 374 NGLVVKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 433
FK KVD K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 356 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 401
Query: 434 SETPFPHRAGNLYKIFYGVSWRGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 491
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 402 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 461
Query: 492 LDIGTNNQG-----YTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLTS 546
LD+G + G +IE + WG YF +N++RL+ KT++DP+N F + QSIPP+ +
Sbjct: 462 LDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 521
Query: 547 W 547
+
Sbjct: 522 F 522
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 353 bits (906), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 198/481 (41%), Positives = 280/481 (58%), Gaps = 29/481 (6%)
Query: 79 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFV 138
QN F KP II P ++ I+C +K + IR+RSGGH +EGLSY S PF+
Sbjct: 40 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 99
Query: 139 VIDLINLSKISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXX 198
+IDL+NL+++S+D + +TAWV+SG+TLG+LYY I + S L
Sbjct: 100 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGG 159
Query: 199 XXXIMLRKFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRL 258
+M RK+GLAADN+VDA LIDA G +LDR++MG+D+FWAIRGGGG +G + AWK++L
Sbjct: 160 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 219
Query: 259 VTVPSTVTRFRITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLF 317
+ VP VT FR+T+ + AT ++HKWQ+VA L ED + V L + V + F
Sbjct: 220 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 278
Query: 318 LGGVDRLL-PLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 373
G+ + FPELGL + D EMSW ES LAG + L+ L D A
Sbjct: 279 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 336
Query: 374 NGLVVKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 433
FK KVD K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 337 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 382
Query: 434 SETPFPHRAGNLYKIFYGVSWRGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 491
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 383 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 442
Query: 492 LDIGTNNQG-----YTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLTS 546
LD+G + G +IE + WG YF +N++RL+ KT++DP+N F + QSIPP+ +
Sbjct: 443 LDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 502
Query: 547 W 547
+
Sbjct: 503 F 503
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 353 bits (906), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 198/481 (41%), Positives = 280/481 (58%), Gaps = 29/481 (6%)
Query: 79 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFV 138
QN F KP II P ++ I+C +K + IR+RSGGH +EGLSY S PF+
Sbjct: 40 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 99
Query: 139 VIDLINLSKISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXX 198
+IDL+NL+++S+D + +TAWV+SG+TLG+LYY I + S L
Sbjct: 100 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 159
Query: 199 XXXIMLRKFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRL 258
+M RK+GLAADN+VDA LIDA G +LDR++MG+D+FWAIRGGGG +G + AWK++L
Sbjct: 160 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 219
Query: 259 VTVPSTVTRFRITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLF 317
+ VP VT FR+T+ + AT ++HKWQ+VA L ED + V L + V + F
Sbjct: 220 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 278
Query: 318 LGGVDRLL-PLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 373
G+ + FPELGL + D EMSW ES LAG + L+ L D A
Sbjct: 279 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 336
Query: 374 NGLVVKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 433
FK KVD K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 337 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 382
Query: 434 SETPFPHRAGNLYKIFYGVSWRGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 491
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 383 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 442
Query: 492 LDIGTNNQG-----YTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLTS 546
LD+G + G +IE + WG YF +N++RL+ KT++DP+N F + QSIPP+ +
Sbjct: 443 LDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 502
Query: 547 W 547
+
Sbjct: 503 F 503
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 277/479 (57%), Gaps = 29/479 (6%)
Query: 79 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFV 138
QN F KP II P ++ I+C +K + IR+RSGG +EGLSY S PF+
Sbjct: 37 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFI 96
Query: 139 VIDLINLSKISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXX 198
+IDL+NL+++S+D + +TAWV+SG+TLG+LYY I + S L
Sbjct: 97 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 156
Query: 199 XXXIMLRKFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRL 258
+M RK+GLAADN+VDA LIDA G +LDR++MG+D+FWAIRGGGG +G + AWK++L
Sbjct: 157 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 216
Query: 259 VTVPSTVTRFRITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLF 317
+ VP VT FR+T+ + AT ++HKWQ+VA L ED + V L + V + F
Sbjct: 217 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 275
Query: 318 LGGVDRLL-PLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 373
G+ + FPELGL + D EMSW ES LAG + L+ L D A
Sbjct: 276 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 333
Query: 374 NGLVVKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 433
FK KVD K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 334 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 379
Query: 434 SETPFPHRAGNLYKIFYGVSWRGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 491
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 380 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 439
Query: 492 LDIGTNNQG-----YTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLT 545
LD+G + G +IE + WG YF +N++RL+ KT++DP+N F + QSIPP+
Sbjct: 440 LDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA 498
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 118/476 (24%), Positives = 199/476 (41%), Gaps = 55/476 (11%)
Query: 102 QVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQS 161
QV A++ + + G ++ VRSGGH FE V V+ID+ L++I+ D ++
Sbjct: 69 QVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTEIAYDPSMNAFLIEP 127
Query: 162 GATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLAADNI--VDAHL 219
G TL ++Y ++ N+ + R+FG D + V+ +
Sbjct: 128 GNTLSEVYEKLY-LGWNVTIPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVV 186
Query: 220 IDARGR------LLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITRT 273
++ +G+ +R DL+WA GGGG +FGVV + +R VP V R
Sbjct: 187 VNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMR---VPEDVGRNPERLL 243
Query: 274 LEQNAT----KIVHKWQYVANNLHEDLVIEVGL-----IKMNSSMVAVFSSLFLGGVDRL 324
+ AT + W + L+ G +S ++S L +G
Sbjct: 244 PKPPATLLTSTVTFDWAGMTEAAFSRLLRNHGEWYERNSGPDSPYTGLWSQLMIGNE--- 300
Query: 325 LPLMQES---FP-ELGLKKGDCTEM--SWIESVHNLAGFDKGQSLDLLLDR-NARSNGLV 377
+P M ES P ++ + D + + IE+V + G + + + R A + G
Sbjct: 301 VPGMGESGFMMPIQVDATRPDARRLLDAHIEAV--IDGVPPAEVPEPIEQRWLASTPG-- 356
Query: 378 VKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEG-ETAFIVLVPYGGKMSEISESET 436
+ K K Y+++ + + + +Y+ +G + + L+ YGGK++ + + T
Sbjct: 357 -RGGRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAAT 415
Query: 437 PFPHRAGNLYKIFYGVSWRGDGISQRHIDWIRSLYSYM------TPYVSKNPREAYVNYR 490
P R L K+ Y W G +H+ W+R LY+ + P + AY+NY
Sbjct: 416 ALPQRDAIL-KVNYITGWANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYP 474
Query: 491 DLDI---GTNNQGYTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPP 543
D D+ G N G W + Y+K N RL VK DP N F + SI P
Sbjct: 475 DSDLADPGLNTSGVP-------WHDLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 186/462 (40%), Gaps = 34/462 (7%)
Query: 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINL-SKIS 149
P I + +Q+A++C+KK ++ +SGGH + + + +++ L + IS
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVIS 96
Query: 150 VDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGL 209
+ K A V+ GA LG L + DK GL
Sbjct: 97 YNDKTGIAHVEPGARLGHLATVLNDKYGR-AISHGTCPGVGISGHFAHGGFGFSSHMHGL 155
Query: 210 AADNIVDAHLIDARGRLLDRKSM-GQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRF 268
A D++V ++ A GR+++ + DLFW I+G G ++FG+V WKL P +TRF
Sbjct: 156 AVDSVVGVTVVLADGRIVEASATENADLFWGIKGAG-SNFGIVAVWKLATFPAPKVLTRF 214
Query: 269 RITRTLEQNATKIVHKWQYVANNLHEDLVIEVGL-IKMNSSMVAVFSSLFLGGVDRLLPL 327
+T +N T + + V + EV I + L+ G ++
Sbjct: 215 GVTLNW-KNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAA 273
Query: 328 MQESFPEL--GLKKGDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSP 385
Q L G T ++WIESV + + FD + N + L +KS
Sbjct: 274 FQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDA 333
Query: 386 FKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE---SETPFPHRA 442
K VDY + + D+F+ F L +GGK S++++ +ET +PHR
Sbjct: 334 VKNFVDYY-----FDVSNKVKDRFW-------FYQLDVHGGKNSQVTKVTNAETAYPHRD 381
Query: 443 GNLYKIFYGVSWRGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGTNNQGYT 502
FY + ++ + +T + K+ Y+NY D + ++ Y
Sbjct: 382 KLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRM---DRDYA 438
Query: 503 SIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPL 544
+ Y+ N RL +K DP + F Q++ P+
Sbjct: 439 T--------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 110/486 (22%), Positives = 192/486 (39%), Gaps = 53/486 (10%)
Query: 90 KPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKIS 149
+P V+ QV A+ + G +I VRSGGH FEG V VID+ + ++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAV-RAVIDMSQMRQVF 113
Query: 150 VDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGL 209
D+ ++ V+ GATLG+ Y R + + R+ G+
Sbjct: 114 YDSGKRAFAVEPGATLGETY-RALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGV 172
Query: 210 AADNI--VDAHLIDARGRLLDRKSMG--------QDLFWAIRGGGGTSFGVVVAWKLRLV 259
AD++ V+ ++DA GR RK + ++L+WA GGGG +FG+V + R
Sbjct: 173 VADHLYAVEVVVVDASGRA--RKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTP 230
Query: 260 ----TVPSTVTRFRITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMV----A 311
T PS + T TL T W + ++ G ++S A
Sbjct: 231 GATGTDPSQLLPKAPTSTLRHIVT---WDWSALTEEAFTRIIDNHGAWHQSNSAAGTPYA 287
Query: 312 VFSSLFLGGVDRLLPLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLDLLLDRNA 371
S+F ++ + + GL + ++ +V+ G +
Sbjct: 288 SMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQ--------- 338
Query: 372 RSNGLVVKSTTKSPF--------KAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVP 423
RS +++T + F K+K Y+++P +Y + + L
Sbjct: 339 RSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLYS 398
Query: 424 YGGKMSEISESETPFPHRAGNLYKIFYGVSWRGDGISQRHIDWIRSLYSYM------TPY 477
YGGK++ + E+ T R ++ K++ +W ++ WIR +Y + P
Sbjct: 399 YGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPV 457
Query: 478 VSKNPREAYVNYRDLDIGTNNQGYTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRN 537
++NY D+D+ + + W Y+K N+ RL VK DP + FR+
Sbjct: 458 PDDRTEGTFINYPDVDLVDERWNTSGVP----WYTLYYKGNYPRLQKVKARWDPRDVFRH 513
Query: 538 EQSIPP 543
S+ P
Sbjct: 514 ALSVRP 519
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 96/473 (20%), Positives = 184/473 (38%), Gaps = 43/473 (9%)
Query: 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISV 150
P I P + AA++C G QI + GGH + + + ++++L + ++SV
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 151 DAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLA 210
D A +Q GA LG + D+ N GL
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQG-NRALSHGTAPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 211 ADNIVDAHLIDARGRLLD-RKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFR 269
D ++ A ++ A ++ ++ DLFWA+RGGGG F +V ++ P +T ++
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGG-GFAIVSEFEFNTFEAPEIITTYQ 219
Query: 270 ITRTL--EQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLFLGGVDRLLPL 327
+T T +Q+ + + N + +L + +++N++ + + F G L +
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNTMPRELSMR---LEINANALN-WEGNFFGNAKDLKKI 275
Query: 328 MQESFPELGLKK--GDCTEMSWIESVHN-LAGFDKGQSLDLLLDRNARSNGLVVKSTTKS 384
+Q + G K E W ++ L G D + + + +N L +
Sbjct: 276 LQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDE 335
Query: 385 PFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGK---MSEISESETPFPHR 441
+A VDY +D G +I +GGK ++ +S ET + HR
Sbjct: 336 AIQAFVDYK------------FDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHR 383
Query: 442 AG----NLYKIFYGVSWRGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGTN 497
Y Y + ++++ + + + ++ + Y NY D +
Sbjct: 384 DQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTL--- 440
Query: 498 NQGYTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLTSWRKK 550
+ E+A Y++ N ++L +K DP + F N S+ P+ +K
Sbjct: 441 -----TKEEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQK 485
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/475 (20%), Positives = 183/475 (38%), Gaps = 47/475 (9%)
Query: 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISV 150
P I P + AA++C G QI + GGH + + + ++++L + ++SV
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 151 DAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLA 210
D A +Q GA LG + D+ N GL
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQG-NRALSHGTCPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 211 ADNIVDAHLIDARGRLLD-RKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFR 269
D ++ A ++ A ++ ++ DLFWA+RGGGG F +V ++ P +T ++
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGG-GFAIVSEFEFNTFEAPEIITTYQ 219
Query: 270 ITRTLEQN----ATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLFLGGVDRLL 325
+T T + K + W N + +L + +++N++ + + F G L
Sbjct: 220 VTTTWNRKQHVAGLKALQDW--AQNTMPRELSMR---LEINANALN-WEGNFFGNAKDLK 273
Query: 326 PLMQESFPELGLKK--GDCTEMSWIESVHN-LAGFDKGQSLDLLLDRNARSNGLVVKSTT 382
++Q + G K E W ++ L G D + + + +N L +
Sbjct: 274 KILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLS 333
Query: 383 KSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGK---MSEISESETPFP 439
+A VDY +D G +I +GGK ++ +S ET +
Sbjct: 334 DEAIQAFVDYK------------FDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYA 381
Query: 440 HRAG----NLYKIFYGVSWRGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIG 495
HR Y Y + ++++ + + + ++ + Y NY D +
Sbjct: 382 HRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTL- 440
Query: 496 TNNQGYTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPPLTSWRKK 550
+ E+A Y++ N ++L +K DP + F N S+ P+ +K
Sbjct: 441 -------TKEEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQK 485
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 118/511 (23%), Positives = 189/511 (36%), Gaps = 76/511 (14%)
Query: 78 AQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPF 137
+NLRF P+ I ++++ + + + G ++ VRSGGH +E S V
Sbjct: 50 GENLRF----VGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-R 104
Query: 138 VVIDLINLSKISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXX 197
VV+D+ LS + D ++ V++GATLG +Y + + +
Sbjct: 105 VVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLF-RVWGVTLPGGACPDVGAGGHILG 163
Query: 198 XXXXIMLRKFGLAADNIVDAHLI------DARGRLLDRKSM--GQDLFWAIRGGGGTSFG 249
+ R G D + ++ DAR + R+ DL+WA GGGG +FG
Sbjct: 164 GGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFG 223
Query: 250 VVVAWKLRLVT--VPSTVTRFRITRTLEQNATKIVHKWQYVANNLHEDLVIEVG------ 301
VVV + LR VP R E V W+ + LV G
Sbjct: 224 VVVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNHGRWFEQN 283
Query: 302 ---------------LIKMNSSMVAVFSSLFLGGVD---RLLPLMQESFPELGLKK-GDC 342
L + S +A+ + L G D RL + +G++ D
Sbjct: 284 SGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHSDT 343
Query: 343 TEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKVDYVKQPIPENAF 402
+ W+ S R G+ K K Y ++ +
Sbjct: 344 RRLPWLHST--------------------RWPGIAGDGDMTGRAKIKAAYARRSFDDRQI 383
Query: 403 EGIYDKF--YEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWRGDGIS 460
+Y + + + + L+ YGGK++ + T R ++ KI Y +W
Sbjct: 384 GTLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQD 442
Query: 461 QRHIDWIRSLYSYM------TPYVSKNPREAYVNYRDLDIGTNNQGYTSIEQASIWGNKY 514
H+ WIR LY + P AYVNY D+D+ + + W Y
Sbjct: 443 PVHVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLADEEWNTSGVP----WSELY 498
Query: 515 FKNNFKRLVHVKTMVDPHNFFRNEQS--IPP 543
+K+ + RL VK DP N FR+ S +PP
Sbjct: 499 YKDAYPRLQAVKARWDPRNVFRHALSVRVPP 529
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 112/476 (23%), Positives = 185/476 (38%), Gaps = 79/476 (16%)
Query: 90 KPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKIS 149
+P +I L V +++ + +G +I VRSGGH+ G Y + +V+DL ++ I
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 150 VDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGL 209
+D A + G G L A L + K+GL
Sbjct: 96 IDTAGSRARIGGGVISGDLVKEAA--KFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGL 153
Query: 210 AADNIVDAHLIDARGRLL----DRKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTV 265
A+DNI+ A L+ A G ++ D + +LFWA+R G G +FGVV +++L +P +
Sbjct: 154 ASDNILGATLVTATGDVIYCSDDER---PELFWAVR-GAGPNFGVVTEVEVQLYELPRKM 209
Query: 266 TRFRIT-----RTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNSSMVAVFSSLFLGG 320
IT L T ++ +A++++ + + V + S V V LGG
Sbjct: 210 LAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVG---HLGG 266
Query: 321 VD-------RLLPLMQESFPELGLKKGDCTEMSWIESVHNLAGFDKGQSLDLLLDRN-AR 372
+D RL L + + ++ D E+ + + + F+ G S +L +DR A
Sbjct: 267 LDIAERDIARLRGLGRTVSDSIAVRSYD--EVVALNA--EVGSFEDGMS-NLWIDREIAM 321
Query: 373 SNGLVVKSTTKSPFKAKVDYVKQPIPENAFEGIYDKFYEEEGETAFIVL----VPYGGKM 428
N + A G DKF E + L +P+G
Sbjct: 322 PNARFAE---------------------AIAGNLDKFVSEPASGGSVKLEIEGMPFG--- 357
Query: 429 SEISESETPFPHRAGNLYKIFYGVSWRGDGI-SQRHIDWIRSLYSYMTPYVSKNPREAYV 487
+ TP HR + + W G S+++ + R L + + A V
Sbjct: 358 ---NPKRTPARHR--DAMGVLALAEWSGAAPGSEKYPELARELDAALL--------RAGV 404
Query: 488 NYRDLDIGTNNQGYTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIPP 543
+ NN T+ A + Y + RL VK DP N FR+ +I P
Sbjct: 405 TTSGFGLLNNNSEVTAEMVAEV----YKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 113/510 (22%), Positives = 189/510 (37%), Gaps = 102/510 (20%)
Query: 90 KPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGH---DFEGLSYVSQVPFVVIDLINLS 146
+P+ P V A+++ + G + RSGGH DF G +V+DL NL
Sbjct: 34 EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRD----LVLDLHNLH 89
Query: 147 KISVDAKQKTAWVQSGATLGQLYYRIADKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRK 206
I A V SGAT+ Q+ + + N + R+
Sbjct: 90 AIGPAADGAGVRVGSGATVDQVQKALF-RRWNAALPLGACSAVGMGGLVAGGGYGPLSRQ 148
Query: 207 FGLAADNI--VDAHLID-------ARGRLLDRKSMGQDLFWAIRGGGGTSFGVVVAWKLR 257
GL D++ V+ ++D R D +G+ LFWA GGGG +FGVV A++ R
Sbjct: 149 LGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGNFGVVTAYEFR 207
Query: 258 ----LVTVPSTVTRFRITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKM-------- 305
L T P + R + K+V W + D V +++
Sbjct: 208 SPEHLATEPVGLPR----AAGRLHVQKVVFPWAMI------DETSFVTVMRRFFEWHERH 257
Query: 306 ---NSSMVAVFSSLFLGGVD----------------------RLLPLMQESFPELGLKKG 340
S ++F++ F+ V R + + E +G+ +G
Sbjct: 258 SEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVVGIPRG 317
Query: 341 DCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKVDYVKQPIPEN 400
MSW+ ++ D G D++ R+A + + T ++ P
Sbjct: 318 GV--MSWLTGTRYMSQADCG---DVMGARSASKSAYHRAAPTDEQLSVLHRHLHADHP-- 370
Query: 401 AFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWRGDGIS 460
G+ ++++ YGG+++ S+ P R ++ K + +W+ +
Sbjct: 371 -------------GQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDAELD 416
Query: 461 QRHIDWIRSLYSYM------TPYVSKNPREAYVNYRD---LDIGTNNQGYTSIEQASIWG 511
+ H+ W+R LY P Y+NY D LD N G W
Sbjct: 417 ELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSG-------EPWH 469
Query: 512 NKYFKNNFKRLVHVKTMVDPHNFFRNEQSI 541
+ Y+K+N+ RL K DP N F + SI
Sbjct: 470 HLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPF----VVIDLINLS 146
P +T V QVQ +K +H I S G +F Y S P V++DL ++
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDLKKMN 113
Query: 147 KI-SVDAKQKTAWVQSGATLGQLYYRIADKS 176
KI +D + A V+ G T GQ+Y I + +
Sbjct: 114 KIIKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPF----VVIDLINLS 146
P +T V QVQ +K +H I S G +F Y S P V++DL ++
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDLKKMN 114
Query: 147 KI-SVDAKQKTAWVQSGATLGQLYYRIADKS 176
KI +D + A V+ G T GQ+Y I + +
Sbjct: 115 KIIKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|1SMN|A Chain A, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1SMN|B Chain B, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1QAE|A Chain A, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1QAE|B Chain B, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1G8T|A Chain A, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
pdb|1G8T|B Chain B, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
Length = 245
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQV 135
P + P D + AA+K + H + +G D+E L+Y+S +
Sbjct: 67 PADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNI 111
>pdb|1QL0|A Chain A, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
pdb|1QL0|B Chain B, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
Length = 241
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQV 135
P + P D + AA+K + H + +G D+E L+Y+S +
Sbjct: 63 PADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNI 107
>pdb|3VIC|A Chain A, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|B Chain B, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|C Chain C, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|D Chain D, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|E Chain E, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|F Chain F, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|G Chain G, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|H Chain H, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
Length = 238
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 470 LYSYMTPYVSKNPREA----YVNYRDLDIGTNNQGYTSIEQASI 509
L + T Y +K P + YV+ R LD+ +N+ YTS+EQ I
Sbjct: 187 LCEFKTTYKAKKPVKMPGYHYVD-RKLDVTNHNKDYTSVEQCEI 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,249,361
Number of Sequences: 62578
Number of extensions: 656951
Number of successful extensions: 1630
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 36
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)