Query 008779
Match_columns 554
No_of_seqs 326 out of 2383
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 16:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 3.3E-39 7.2E-44 345.5 40.9 187 82-273 56-253 (525)
2 TIGR01677 pln_FAD_oxido plant- 100.0 1.2E-33 2.5E-38 306.6 31.5 203 42-267 3-217 (557)
3 TIGR01678 FAD_lactone_ox sugar 100.0 1.7E-32 3.8E-37 291.7 34.3 195 83-289 7-204 (438)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 6.8E-32 1.5E-36 286.9 30.2 173 83-265 4-179 (419)
5 COG0277 GlcD FAD/FMN-containin 100.0 6.6E-32 1.4E-36 292.2 27.6 183 87-274 28-219 (459)
6 TIGR01676 GLDHase galactonolac 100.0 1.8E-32 3.8E-37 293.4 22.7 196 82-289 53-251 (541)
7 PLN02805 D-lactate dehydrogena 100.0 1.9E-32 4.2E-37 297.8 23.3 190 89-282 132-328 (555)
8 PRK11230 glycolate oxidase sub 100.0 5E-31 1.1E-35 285.2 22.9 192 87-282 52-251 (499)
9 KOG1231 Proteins containing th 100.0 4.5E-30 9.7E-35 259.5 22.4 179 83-264 56-241 (505)
10 PRK11282 glcE glycolate oxidas 100.0 2.6E-29 5.5E-34 258.7 20.7 170 99-273 3-181 (352)
11 TIGR00387 glcD glycolate oxida 100.0 1.9E-29 4.1E-34 268.4 20.1 185 94-282 1-194 (413)
12 PLN02465 L-galactono-1,4-lacto 100.0 1.6E-28 3.6E-33 265.0 23.1 177 82-265 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 2E-26 4.4E-31 208.6 14.1 136 91-228 1-137 (139)
14 KOG4730 D-arabinono-1, 4-lacto 99.9 6.8E-26 1.5E-30 229.3 16.7 208 38-271 17-227 (518)
15 PRK11183 D-lactate dehydrogena 99.9 2.2E-23 4.7E-28 220.2 18.4 192 88-285 36-289 (564)
16 PRK13905 murB UDP-N-acetylenol 99.9 9.2E-24 2E-28 214.8 12.4 164 87-262 27-193 (298)
17 KOG1232 Proteins containing th 99.9 2E-22 4.3E-27 199.4 18.2 188 78-267 77-271 (511)
18 PRK12436 UDP-N-acetylenolpyruv 99.8 4.9E-21 1.1E-25 194.6 13.1 162 87-261 33-197 (305)
19 TIGR00179 murB UDP-N-acetyleno 99.8 6.6E-21 1.4E-25 192.1 12.7 163 87-260 9-174 (284)
20 KOG1233 Alkyl-dihydroxyacetone 99.8 3.2E-20 6.9E-25 184.0 15.5 190 83-273 153-351 (613)
21 PRK14652 UDP-N-acetylenolpyruv 99.8 2.1E-20 4.5E-25 189.6 14.0 163 87-262 32-196 (302)
22 PRK13903 murB UDP-N-acetylenol 99.8 3.6E-20 7.9E-25 191.0 15.4 164 87-262 29-197 (363)
23 PRK13906 murB UDP-N-acetylenol 99.8 2.4E-20 5.2E-25 189.6 12.8 161 88-260 34-196 (307)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 9.6E-19 2.1E-23 177.1 16.2 166 87-261 17-192 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 9.2E-17 2E-21 162.0 12.8 161 87-261 30-193 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 1.1E-15 2.3E-20 151.4 13.6 166 86-261 16-183 (291)
27 PF08031 BBE: Berberine and be 99.6 1.5E-16 3.3E-21 115.1 3.1 47 485-542 1-47 (47)
28 PRK14650 UDP-N-acetylenolpyruv 99.6 2.5E-15 5.4E-20 151.2 11.9 164 87-262 29-195 (302)
29 PRK00046 murB UDP-N-acetylenol 99.6 2.9E-15 6.2E-20 153.0 11.2 163 87-261 17-188 (334)
30 KOG1262 FAD-binding protein DI 99.6 2.7E-15 5.8E-20 149.6 7.2 167 98-266 61-233 (543)
31 PRK14648 UDP-N-acetylenolpyruv 99.6 2.1E-14 4.6E-19 146.4 12.4 165 87-261 26-236 (354)
32 PRK14651 UDP-N-acetylenolpyruv 99.4 8.7E-13 1.9E-17 131.0 11.2 152 88-261 17-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.0 7.3E-10 1.6E-14 109.2 9.4 144 88-262 16-160 (257)
34 PF00941 FAD_binding_5: FAD bi 96.5 0.002 4.4E-08 60.3 3.0 104 91-200 2-117 (171)
35 PRK09799 putative oxidoreducta 96.2 0.019 4.1E-07 57.4 8.3 139 93-257 4-155 (258)
36 TIGR03312 Se_sel_red_FAD proba 95.3 0.066 1.4E-06 53.5 8.4 141 94-257 4-154 (257)
37 PRK09971 xanthine dehydrogenas 94.4 0.07 1.5E-06 54.4 5.8 103 93-199 6-119 (291)
38 PF09265 Cytokin-bind: Cytokin 93.8 0.12 2.7E-06 51.8 6.1 33 508-541 248-280 (281)
39 TIGR02963 xanthine_xdhA xanthi 92.7 0.29 6.2E-06 53.3 7.2 152 91-258 192-358 (467)
40 TIGR03195 4hydrxCoA_B 4-hydrox 91.5 0.35 7.5E-06 49.9 5.8 98 93-198 6-117 (321)
41 PLN00107 FAD-dependent oxidore 90.5 0.7 1.5E-05 45.6 6.6 22 517-538 176-197 (257)
42 TIGR03199 pucC xanthine dehydr 90.5 0.33 7.2E-06 48.7 4.5 96 97-198 1-109 (264)
43 PLN02906 xanthine dehydrogenas 85.1 1.5 3.3E-05 53.8 6.4 79 92-174 229-309 (1319)
44 PLN00192 aldehyde oxidase 84.6 2.2 4.7E-05 52.6 7.3 107 91-198 233-352 (1344)
45 PF04030 ALO: D-arabinono-1,4- 84.4 1.2 2.7E-05 44.3 4.4 22 517-538 233-254 (259)
46 PF02913 FAD-oxidase_C: FAD li 83.1 1.2 2.6E-05 43.3 3.7 66 456-537 179-245 (248)
47 TIGR02969 mam_aldehyde_ox alde 81.8 2.9 6.2E-05 51.5 6.9 78 92-173 237-316 (1330)
48 COG1319 CoxM Aerobic-type carb 78.0 6.7 0.00015 39.7 7.0 75 91-169 3-80 (284)
49 PF03614 Flag1_repress: Repres 70.7 14 0.00031 33.1 6.3 39 93-131 8-47 (165)
50 COG4630 XdhA Xanthine dehydrog 64.7 15 0.00033 38.1 6.0 140 90-241 202-352 (493)
51 TIGR00387 glcD glycolate oxida 63.6 5.6 0.00012 42.7 2.9 29 509-537 382-411 (413)
52 PLN02805 D-lactate dehydrogena 61.5 12 0.00026 41.8 5.1 36 508-543 515-551 (555)
53 KOG4730 D-arabinono-1, 4-lacto 52.7 7.1 0.00015 41.5 1.4 24 512-537 482-505 (518)
54 PRK11230 glycolate oxidase sub 50.2 18 0.00039 39.8 4.1 33 510-542 440-473 (499)
55 COG4981 Enoyl reductase domain 50.0 33 0.00071 37.5 5.7 106 43-166 112-225 (717)
56 PRK11282 glcE glycolate oxidas 43.0 15 0.00032 38.5 2.0 22 516-537 323-345 (352)
57 COG1519 KdtA 3-deoxy-D-manno-o 35.7 1.7E+02 0.0037 31.3 8.3 35 89-123 259-293 (419)
58 KOG3282 Uncharacterized conser 34.9 53 0.0012 30.8 4.0 37 82-120 118-154 (190)
59 COG0351 ThiD Hydroxymethylpyri 33.5 1.5E+02 0.0033 29.7 7.2 90 60-176 133-225 (263)
60 PF02601 Exonuc_VII_L: Exonucl 32.9 58 0.0013 33.4 4.5 58 60-124 18-87 (319)
61 PF07172 GRP: Glycine rich pro 32.1 24 0.00053 29.5 1.2 17 1-17 1-17 (95)
62 TIGR00178 monomer_idh isocitra 31.1 2.8E+02 0.0061 31.0 9.1 127 100-241 312-460 (741)
63 PRK00286 xseA exodeoxyribonucl 25.1 73 0.0016 34.4 3.7 57 60-123 139-203 (438)
64 PRK04322 peptidyl-tRNA hydrola 24.0 1.2E+02 0.0025 26.3 4.0 41 83-125 42-83 (113)
65 COG4359 Uncharacterized conser 23.7 87 0.0019 29.6 3.3 26 103-128 78-103 (220)
66 cd07033 TPP_PYR_DXS_TK_like Py 23.1 1.3E+02 0.0028 27.3 4.5 30 92-121 125-154 (156)
67 cd05014 SIS_Kpsf KpsF-like pro 22.4 1.3E+02 0.0029 25.7 4.3 34 93-126 53-86 (128)
68 cd02429 PTH2_like Peptidyl-tRN 21.8 1.9E+02 0.004 25.2 4.9 31 90-120 55-85 (116)
69 COG1058 CinA Predicted nucleot 21.5 1.3E+02 0.0027 30.1 4.2 61 57-127 13-73 (255)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=3.3e-39 Score=345.49 Aligned_cols=187 Identities=19% Similarity=0.338 Sum_probs=168.9
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHH--HcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCc------E-EEcC
Q 008779 82 RFSTPNTPKPQVIITPLDVSQVQAAIKCSK--KHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSK------I-SVDA 152 (554)
Q Consensus 82 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~--~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~------i-~vd~ 152 (554)
.|.....+.|.+|++|+|++||+++|++|+ +++++|++||+|||+.+.+...+ |++|||++||+ + ++|.
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~ 133 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSG 133 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcC
Confidence 487777889999999999999999999997 66999999999999998887654 89999999999 3 8899
Q ss_pred CCCEEEEcCCCcHHHHHHHHHhhCCCcccCC-CCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec-cC
Q 008779 153 KQKTAWVQSGATLGQLYYRIADKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD-RK 230 (554)
Q Consensus 153 ~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~ 230 (554)
+..+|+|++|++|.+|.+++.++| ++.+. +.+..++|||.+++||+|..+.+||..+|+|+++|||+++|++++ +.
T Consensus 134 ~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~ 211 (525)
T PLN02441 134 DGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSP 211 (525)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCC
Confidence 999999999999999999999986 55443 556789999999999999999999999999999999999999997 66
Q ss_pred CCCcchHHHHhccCCCCceEEEEEEEEEEecCCeEEEEEEeec
Q 008779 231 SMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITRT 273 (554)
Q Consensus 231 ~~~~dl~~a~rg~~~g~fGiVt~~t~~l~p~p~~~~~~~~~~~ 273 (554)
.+|+|||||++||+ |+|||||++|+|++|.|+.+.++.+.+.
T Consensus 212 ~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~ 253 (525)
T PLN02441 212 TQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYS 253 (525)
T ss_pred CCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence 67899999999998 8999999999999999997777666664
No 2
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.2e-33 Score=306.59 Aligned_cols=203 Identities=19% Similarity=0.232 Sum_probs=175.4
Q ss_pred hhHHHHHccCCCCCCCccceeecCCCCChhhHhhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEe
Q 008779 42 NLFLDCLSMHPDNSSSISQVIYTKYSPSYSSVLSSSAQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRS 121 (554)
Q Consensus 42 ~~~~~cl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~g 121 (554)
++.++|.++. ++|++. +.|.+ |+....+.|.+|++|+|++||+++|++|+++++||+++|
T Consensus 3 ~~~~~~~~~~-------~~~~~~---~~w~n----------Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~G 62 (557)
T TIGR01677 3 DDPVRCVSGG-------ANCTVS---NAYGA----------FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVT 62 (557)
T ss_pred CCCeecccCC-------CCceee---cchhh----------cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4557897555 678775 67764 999999999999999999999999999999999999996
Q ss_pred -CCCCCCCCccccC-CCeEEEEecCCCc-EEEcCCCCEEEEcCCCcHHHHHHHHHhhCCCcccCCC-CCCcccchhhhcC
Q 008779 122 -GGHDFEGLSYVSQ-VPFVVIDLINLSK-ISVDAKQKTAWVQSGATLGQLYYRIADKSKNLGFPGG-VCPTVGVGGHFSG 197 (554)
Q Consensus 122 -gGhs~~~~~~~~~-~~gvvIdl~~l~~-i~vd~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g-~~~~vgigG~~~g 197 (554)
+||++.+.+...+ ++|++|||++||+ +++|.++++|+|+||+++.+|.+.|.++| ++++.+ .+..++|||.+++
T Consensus 63 G~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiat 140 (557)
T TIGR01677 63 RYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGT 140 (557)
T ss_pred CCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhC
Confidence 5999887665532 2379999999999 59999999999999999999999999987 667764 4567899999999
Q ss_pred CCCCCcc-ccccccccceeEEEEEecCC------eeec-cCCCCcchHHHHhccCCCCceEEEEEEEEEEecCCeEEE
Q 008779 198 GGYGIML-RKFGLAADNIVDAHLIDARG------RLLD-RKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTR 267 (554)
Q Consensus 198 gg~g~~~-~~~G~~~d~v~~~~vV~~~G------~v~~-~~~~~~dl~~a~rg~~~g~fGiVt~~t~~l~p~p~~~~~ 267 (554)
|+||... ++||...|+|++++||+++| ++++ +..+++|||||+|||+ |+|||||++|||++|.+.....
T Consensus 141 GthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~~~ 217 (557)
T TIGR01677 141 GAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRSVT 217 (557)
T ss_pred CCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccceEE
Confidence 9999866 68999999999999999998 7776 5557889999999998 9999999999999998774333
No 3
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.7e-32 Score=291.75 Aligned_cols=195 Identities=21% Similarity=0.343 Sum_probs=170.7
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcC
Q 008779 83 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQS 161 (554)
Q Consensus 83 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~a 161 (554)
|+....+.|.+|+.|+|++||+++|++|+++++|++++|+|||+.+....+ |++|||++|++| ++|+++++|+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~~---gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACTD---GFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccCC---eEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 777788899999999999999999999999999999999999998766543 799999999998 9999999999999
Q ss_pred CCcHHHHHHHHHhhCCCcccC-CCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec-cCCCCcchHHH
Q 008779 162 GATLGQLYYRIADKSKNLGFP-GGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD-RKSMGQDLFWA 239 (554)
Q Consensus 162 G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a 239 (554)
|+++.+|.+.|.++| ++++ .|.++.++|||.+++|+||. +.+||..+|+|+++++|+++|++++ +..+++|||||
T Consensus 84 G~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a 160 (438)
T TIGR01678 84 GIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQA 160 (438)
T ss_pred CCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHH
Confidence 999999999999987 5666 47888999999999999997 6889999999999999999999997 55568999999
Q ss_pred HhccCCCCceEEEEEEEEEEecCCeEEEEEEeechhhhHHHHHHHHHHHH
Q 008779 240 IRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITRTLEQNATKIVHKWQYVA 289 (554)
Q Consensus 240 ~rg~~~g~fGiVt~~t~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (554)
.+|+. |+|||||++|||++|......... .....++++.|++..
T Consensus 161 ~~~~~-G~lGIIt~vtl~l~p~~~l~~~~~-----~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 161 ARVSL-GCLGIIVTVTIQVVPQFHLQETSF-----VSTLKELLDNWDSHW 204 (438)
T ss_pred HhcCC-CceEeeEEEEEEEEeccceEEEEe-----cCCHHHHHHHHHHHh
Confidence 99998 899999999999999876443221 122456666776654
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=6.8e-32 Score=286.89 Aligned_cols=173 Identities=27% Similarity=0.407 Sum_probs=155.1
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcC
Q 008779 83 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQS 161 (554)
Q Consensus 83 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~a 161 (554)
|+....+.|.+|++|+|++||+++|+.|++ |++++|+|||+.+....+ |++|||++||+| ++|+++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~~---g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACTD---GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccCC---CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 888778899999999999999999999974 799999999998765432 799999999998 9999999999999
Q ss_pred CCcHHHHHHHHHhhCCCcccCC-CCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec-cCCCCcchHHH
Q 008779 162 GATLGQLYYRIADKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD-RKSMGQDLFWA 239 (554)
Q Consensus 162 G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a 239 (554)
|+++.+|.+.|.++| +.++. |.+..++|||.+++|+||.. .+||...|+|++++||++||++++ +..+++|||||
T Consensus 78 G~~l~~l~~~L~~~G--~~l~~~~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a 154 (419)
T TIGR01679 78 GTRLGALGPQLAQRG--LGLENQGDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLA 154 (419)
T ss_pred CCCHHHHHHHHHHcC--CccccCCCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHH
Confidence 999999999999987 45553 55566899999999999975 589999999999999999999997 55678999999
Q ss_pred HhccCCCCceEEEEEEEEEEecCCeE
Q 008779 240 IRGGGGTSFGVVVAWKLRLVTVPSTV 265 (554)
Q Consensus 240 ~rg~~~g~fGiVt~~t~~l~p~p~~~ 265 (554)
+|||+ |+|||||++|||++|.+...
T Consensus 155 ~~g~~-G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 155 ARVSL-GALGVISQVTLQTVALFRLR 179 (419)
T ss_pred HHhCC-CceEEEEEEEEEeecceEeE
Confidence 99998 89999999999999987643
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=6.6e-32 Score=292.19 Aligned_cols=183 Identities=26% Similarity=0.397 Sum_probs=162.2
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATL 165 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~ 165 (554)
....|.+|+.|+|++||+++|++|.++++||++||+|||+.+.+.+. . +++|||++||+| ++|+++++++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34688999999999999999999999999999999999999888777 3 899999999999 89999999999999999
Q ss_pred HHHHHHHHhhCCCcccCC--CCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec--c----CCCCcchH
Q 008779 166 GQLYYRIADKSKNLGFPG--GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD--R----KSMGQDLF 237 (554)
Q Consensus 166 ~~l~~~l~~~g~~l~~~~--g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~--~----~~~~~dl~ 237 (554)
.+|.++|.++| +.+|. +....++|||+++++++|..+.+||...|+|+++++|++||++++ . ...+.||+
T Consensus 106 ~~l~~~l~~~G--~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 106 EDLEKALAPHG--LFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred HHHHHHHHHcC--CccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 99999999987 55565 333479999999999999999999999999999999999999996 1 24468999
Q ss_pred HHHhccCCCCceEEEEEEEEEEecCCeEEEEEEeech
Q 008779 238 WAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITRTL 274 (554)
Q Consensus 238 ~a~rg~~~g~fGiVt~~t~~l~p~p~~~~~~~~~~~~ 274 (554)
.+..|+. |+|||||++|+|++|.|+........+..
T Consensus 184 ~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 184 ALFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred HhcccCC-ccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 9999988 99999999999999998865554444443
No 6
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.8e-32 Score=293.38 Aligned_cols=196 Identities=18% Similarity=0.275 Sum_probs=170.8
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEc
Q 008779 82 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQ 160 (554)
Q Consensus 82 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~ 160 (554)
+|+....+.|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+... +.+|||++||+| +||+++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 3999999999999999999999999999999999999999999999877765 357999999997 999999999999
Q ss_pred CCCcHHHHHHHHHhhCCCcccCC-CCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec-cCCCCcchHH
Q 008779 161 SGATLGQLYYRIADKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD-RKSMGQDLFW 238 (554)
Q Consensus 161 aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~ 238 (554)
||+++.+|.++|.++| ++++. |.+..++|||.+++|+||... +||...|+|++++||+++|+++. +..+++||||
T Consensus 130 AG~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg~-~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 206 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTGA-KLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFF 206 (541)
T ss_pred CCCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCCC-CCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHH
Confidence 9999999999999987 66665 788889999999999999864 79999999999999999999987 5567899999
Q ss_pred HHhccCCCCceEEEEEEEEEEecCCeEEEEEEeechhhhHHHHHHHHHHHH
Q 008779 239 AIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITRTLEQNATKIVHKWQYVA 289 (554)
Q Consensus 239 a~rg~~~g~fGiVt~~t~~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (554)
|+|||+ |+|||||++|||++|.+..... ....+ ..++++.|.++.
T Consensus 207 Aargsl-G~LGVItevTLr~~Pa~~l~~~-~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 207 LARCGL-GGLGVVAEVTLQCVERQELVEH-TFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHhcCC-CceEeEEEEEEEEEeccceeEE-EEecC----HHHHHHHHHHHH
Confidence 999998 8999999999999999874322 11122 344555666554
No 7
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.9e-32 Score=297.75 Aligned_cols=190 Identities=20% Similarity=0.309 Sum_probs=169.1
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHH
Q 008779 89 PKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQ 167 (554)
Q Consensus 89 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~ 167 (554)
..|.+|++|+|++||+++|++|+++++|++++|||||+.|.+.+.. ++++|||++||+| ++|+++++|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 5799999999999999999999999999999999999998776542 5899999999998 8999999999999999999
Q ss_pred HHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeecc--C----CCCcchHHHHh
Q 008779 168 LYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLDR--K----SMGQDLFWAIR 241 (554)
Q Consensus 168 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~~--~----~~~~dl~~a~r 241 (554)
|.++|.++| +.+|...++.++|||+++++++|..+.+||.+.|+|+++|||++||++++. . ..++||+|+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999987 678887778889999999999999999999999999999999999999952 1 24689999999
Q ss_pred ccCCCCceEEEEEEEEEEecCCeEEEEEEeechhhhHHHHH
Q 008779 242 GGGGTSFGVVVAWKLRLVTVPSTVTRFRITRTLEQNATKIV 282 (554)
Q Consensus 242 g~~~g~fGiVt~~t~~l~p~p~~~~~~~~~~~~~~~~~~~~ 282 (554)
|+. |+|||||+++||++|.|+....+.+.|+..+++.+++
T Consensus 289 Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av 328 (555)
T PLN02805 289 GSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVA 328 (555)
T ss_pred cCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHH
Confidence 998 9999999999999999997777777776433344444
No 8
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.97 E-value=5e-31 Score=285.24 Aligned_cols=192 Identities=19% Similarity=0.292 Sum_probs=166.3
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATL 165 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~ 165 (554)
....|.+|++|+|++||+++|++|+++++||.+||+||++.+.+.+.. ++++|||++||+| ++|+++++|+||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 356899999999999999999999999999999999999987666543 4899999999998 99999999999999999
Q ss_pred HHHHHHHHhhCCCcccC--CCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeeccC-----CCCcchHH
Q 008779 166 GQLYYRIADKSKNLGFP--GGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLDRK-----SMGQDLFW 238 (554)
Q Consensus 166 ~~l~~~l~~~g~~l~~~--~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~~~-----~~~~dl~~ 238 (554)
.+|.++|.++|+ .++ ++....++|||++++++.|+.+.+||...|+|+++|||++||++++.. ..++||+|
T Consensus 131 ~~L~~~l~~~Gl--~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~ 208 (499)
T PRK11230 131 LAISQAAAPHGL--YYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLA 208 (499)
T ss_pred HHHHHHHHHcCC--eeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHh
Confidence 999999999874 444 344556899999999999999999999999999999999999999732 34789999
Q ss_pred HHhccCCCCceEEEEEEEEEEecCCeEEEEEEeechhhhHHHHH
Q 008779 239 AIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITRTLEQNATKIV 282 (554)
Q Consensus 239 a~rg~~~g~fGiVt~~t~~l~p~p~~~~~~~~~~~~~~~~~~~~ 282 (554)
+++|+. |+|||||++|||++|.|+....+.+.+...+++.+++
T Consensus 209 l~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~ 251 (499)
T PRK11230 209 LFTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAV 251 (499)
T ss_pred hhccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHH
Confidence 999998 9999999999999999997766666665433333333
No 9
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=4.5e-30 Score=259.46 Aligned_cols=179 Identities=21% Similarity=0.363 Sum_probs=154.9
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCCCCccccCCCeEEEEec---CCCcE-EEcCCCCE
Q 008779 83 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKH--GFQIRVRSGGHDFEGLSYVSQVPFVVIDLI---NLSKI-SVDAKQKT 156 (554)
Q Consensus 83 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~--~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~---~l~~i-~vd~~~~~ 156 (554)
|.......|.+|+.|+|+|||++++|.|... .+||.+||+|||..|++.... +|++|.|+ .|+++ .++.+...
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~y 134 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLY 134 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccce
Confidence 4444566999999999999999999999999 899999999999999887743 48776664 35665 56667799
Q ss_pred EEEcCCCcHHHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec-cCCCCcc
Q 008779 157 AWVQSGATLGQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD-RKSMGQD 235 (554)
Q Consensus 157 v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~d 235 (554)
|.|.||..|-+|.+++.++|+.-.++....+ .+|||.++.+|.|....+||...+||++++||+++|++++ +...|++
T Consensus 135 vdV~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~ 213 (505)
T KOG1231|consen 135 VDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSN 213 (505)
T ss_pred EEeeCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCce
Confidence 9999999999999999998742133333334 8999999999999999999999999999999999999997 6668999
Q ss_pred hHHHHhccCCCCceEEEEEEEEEEecCCe
Q 008779 236 LFWAIRGGGGTSFGVVVAWKLRLVTVPST 264 (554)
Q Consensus 236 l~~a~rg~~~g~fGiVt~~t~~l~p~p~~ 264 (554)
||+++.||. |.|||||+++++|+|+|..
T Consensus 214 lf~~vlGgl-GqfGIITrArI~le~aP~~ 241 (505)
T KOG1231|consen 214 LFFLVLGGL-GQFGIITRARIKLEPAPKR 241 (505)
T ss_pred eeeeeeccC-cceeeEEEEEEEeccCCcc
Confidence 999999998 9999999999999999953
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=2.6e-29 Score=258.65 Aligned_cols=170 Identities=22% Similarity=0.306 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCC-CCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHHHHHHhhC
Q 008779 99 DVSQVQAAIKCSKKHGFQIRVRSGGH-DFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLYYRIADKS 176 (554)
Q Consensus 99 s~~dv~~~v~~a~~~~~~v~v~ggGh-s~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~g 176 (554)
.++||+++|++|+++++|+.++|||| ++.+.. .+ +++|||++||+| ++|+++.+|+|++|+++.+|.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LA--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CC--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 455542 23 579999999998 9999999999999999999999999998
Q ss_pred CCcccCCC-CCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeecc------CCCCcchHHHHhccCCCCce
Q 008779 177 KNLGFPGG-VCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLDR------KSMGQDLFWAIRGGGGTSFG 249 (554)
Q Consensus 177 ~~l~~~~g-~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~~------~~~~~dl~~a~rg~~~g~fG 249 (554)
..+.+.++ .+...+|||++++|++|..+.+||..+|+|+++++|+++|++++. ...++||||+++|+. |+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chhh
Confidence 55544333 445689999999999999999999999999999999999999862 235789999999998 9999
Q ss_pred EEEEEEEEEEecCCeEEEEEEeec
Q 008779 250 VVVAWKLRLVTVPSTVTRFRITRT 273 (554)
Q Consensus 250 iVt~~t~~l~p~p~~~~~~~~~~~ 273 (554)
|||++|||++|.|+....+.+.++
T Consensus 158 Vitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hheEEEEEEEecCceEEEEEEecC
Confidence 999999999999987655444443
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=1.9e-29 Score=268.45 Aligned_cols=185 Identities=22% Similarity=0.313 Sum_probs=159.8
Q ss_pred EEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHHHHH
Q 008779 94 IITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLYYRI 172 (554)
Q Consensus 94 vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l 172 (554)
||+|+|++||+++|++|+++++|+.++|+|||+.+.+.+.+ ++++|||++||+| ++|+++++++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987666553 5899999999998 999999999999999999999999
Q ss_pred HhhCCCcccCC--CCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeecc------CCCCcchHHHHhccC
Q 008779 173 ADKSKNLGFPG--GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLDR------KSMGQDLFWAIRGGG 244 (554)
Q Consensus 173 ~~~g~~l~~~~--g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~~------~~~~~dl~~a~rg~~ 244 (554)
.++| +.++. +.....+|||++++++.|..+.+||...|+|++++||++||++++. ...++||++.+.|+.
T Consensus 80 ~~~g--l~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~ 157 (413)
T TIGR00387 80 EEHN--LFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE 157 (413)
T ss_pred HHcC--CeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC
Confidence 9987 45543 4445688999999999999999999999999999999999999862 234679999999998
Q ss_pred CCCceEEEEEEEEEEecCCeEEEEEEeechhhhHHHHH
Q 008779 245 GTSFGVVVAWKLRLVTVPSTVTRFRITRTLEQNATKIV 282 (554)
Q Consensus 245 ~g~fGiVt~~t~~l~p~p~~~~~~~~~~~~~~~~~~~~ 282 (554)
|+|||||+++||++|.|+....+.+.+...+++.+++
T Consensus 158 -GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~ 194 (413)
T TIGR00387 158 -GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAV 194 (413)
T ss_pred -ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHH
Confidence 8999999999999999987666666665433333333
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=1.6e-28 Score=264.96 Aligned_cols=177 Identities=21% Similarity=0.318 Sum_probs=160.1
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEc
Q 008779 82 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQ 160 (554)
Q Consensus 82 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~ 160 (554)
+|+....+.|.+++.|+|++||+++|+.|+++++||+++|+|||+.+....++ .+|||++|++| ++|++.++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~---glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE---GMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC---EEEECcCCCCcEEEeCCCCEEEEc
Confidence 49999999999999999999999999999999999999999999988776553 46899999997 999999999999
Q ss_pred CCCcHHHHHHHHHhhCCCcccCC-CCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec-cCCCCcchHH
Q 008779 161 SGATLGQLYYRIADKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD-RKSMGQDLFW 238 (554)
Q Consensus 161 aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~ 238 (554)
||+++.+|.+.|.++| ++++. |.+...+|||.+++|+||... .+|...|+|++++||+++|++++ +..+++||||
T Consensus 165 AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 9999999999999987 56665 556678999999999999865 68899999999999999999887 5556789999
Q ss_pred HHhccCCCCceEEEEEEEEEEecCCeE
Q 008779 239 AIRGGGGTSFGVVVAWKLRLVTVPSTV 265 (554)
Q Consensus 239 a~rg~~~g~fGiVt~~t~~l~p~p~~~ 265 (554)
+.|++. |.|||||++|||++|.++..
T Consensus 242 aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 242 LARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred HhhccC-CCCcEEEEEEEEEEecCceE
Confidence 999998 89999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=2e-26 Score=208.59 Aligned_cols=136 Identities=35% Similarity=0.560 Sum_probs=124.0
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCc-EEEcCCCCEEEEcCCCcHHHHH
Q 008779 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSK-ISVDAKQKTAWVQSGATLGQLY 169 (554)
Q Consensus 91 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~-i~vd~~~~~v~v~aG~~~~~l~ 169 (554)
|.+|++|+|++||+++|++|+++++|++++|+||++.+.+... ++++|||++|++ +++|++.++++|++|+++.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 7899999999999999999999999999999999998776633 499999999999 5999999999999999999999
Q ss_pred HHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec
Q 008779 170 YRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD 228 (554)
Q Consensus 170 ~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~ 228 (554)
++|.++|+.+.+.++.+..++|||++++|++|..++.||...|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999875333346778889999999999999999999999999999999999999985
No 14
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.94 E-value=6.8e-26 Score=229.30 Aligned_cols=208 Identities=23% Similarity=0.270 Sum_probs=177.0
Q ss_pred CCChhhHHHHHccCCCCCCCccceeecCCCCChhhHhhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcE
Q 008779 38 HHDENLFLDCLSMHPDNSSSISQVIYTKYSPSYSSVLSSSAQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQI 117 (554)
Q Consensus 38 ~~~~~~~~~cl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v 117 (554)
+.++++...|-+.. ..|..+ ..|.+ |+++..|+.+.|-+|+|++||.++|+.|+++|.++
T Consensus 17 S~Pp~~p~r~~~~~-------~~~t~~---~tY~a----------fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~ki 76 (518)
T KOG4730|consen 17 SIPPPPPFRCDSGN-------TFCTVA---NTYGA----------FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKI 76 (518)
T ss_pred cCCCCCCccccccc-------eeeeee---ecccc----------cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceE
Confidence 44556668887644 334444 67765 88888899999999999999999999999999999
Q ss_pred EEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHHHHHHhhCCCcccCC-CCCCcccchhhh
Q 008779 118 RVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLYYRIADKSKNLGFPG-GVCPTVGVGGHF 195 (554)
Q Consensus 118 ~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~ 195 (554)
++.|.|||..+..+.+ |.+|+|++||+| ++|++.+++||++|+++.||++++++.| ++++. +....++|||++
T Consensus 77 rvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~G--lsL~~~~si~e~sVgGii 151 (518)
T KOG4730|consen 77 RVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLG--LSLPNAPSISEQSVGGII 151 (518)
T ss_pred EEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcC--ccccCCCceecceeeeEE
Confidence 9999999999998877 599999999997 9999999999999999999999999976 77887 666889999999
Q ss_pred cCCCCCCccccccccccceeEEEEEecCCeeec-cCCCCcchHHHHhccCCCCceEEEEEEEEEEecCCeEEEEEEe
Q 008779 196 SGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD-RKSMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRIT 271 (554)
Q Consensus 196 ~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-~~~~~~dl~~a~rg~~~g~fGiVt~~t~~l~p~p~~~~~~~~~ 271 (554)
++|+||...+-|+......+-..++.++|.++. +.+..+|+|.|.+.+. |.+|||.++||++.|.-+.+..+.+.
T Consensus 152 ~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 152 STGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred ecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhcc-cceeEEEEEEEEEEecceeeeEEEEe
Confidence 999999987756665555666666678998776 5666899999999999 89999999999999998876665553
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=2.2e-23 Score=220.16 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=160.6
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCC----CeEEEEecCCCcE-EEcCCCCEEEEcCC
Q 008779 88 TPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQV----PFVVIDLINLSKI-SVDAKQKTAWVQSG 162 (554)
Q Consensus 88 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~----~gvvIdl~~l~~i-~vd~~~~~v~v~aG 162 (554)
...|.+||+|.|++||+++|++|+++++||.+||||+++.|.+.+.+. ++|||||.+||+| +|| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988887542 4899999999998 888 5678999999
Q ss_pred CcHHHHHHHHHhhCCCcccCC--CC-CCcccchhhhcCCCCCCccccccccccceeEEEEEecCCee-------ec--c-
Q 008779 163 ATLGQLYYRIADKSKNLGFPG--GV-CPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRL-------LD--R- 229 (554)
Q Consensus 163 ~~~~~l~~~l~~~g~~l~~~~--g~-~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v-------~~--~- 229 (554)
+++.+|.++|.++|+ .+++ |+ |-.++|||.+++++-|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl--~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~ 191 (564)
T PRK11183 115 TTLYQLEKALKPLGR--EPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGET 191 (564)
T ss_pred CcHHHHHHHHHHhCC--CCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCC
Confidence 999999999999874 3333 33 3345788999999999999999999999999 999999999 32 1
Q ss_pred --------CCCCc----------------------------------chHHHH--hccCCCCceEEEEEEEEEEecCCeE
Q 008779 230 --------KSMGQ----------------------------------DLFWAI--RGGGGTSFGVVVAWKLRLVTVPSTV 265 (554)
Q Consensus 230 --------~~~~~----------------------------------dl~~a~--rg~~~g~fGiVt~~t~~l~p~p~~~ 265 (554)
...+. |+...+ .|+. |.+||| +++++++|.|+..
T Consensus 192 ~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~ 269 (564)
T PRK11183 192 PEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNT 269 (564)
T ss_pred HHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcc
Confidence 11233 777777 8887 999999 9999999999998
Q ss_pred EEEEEeechhhhHHHHHHHH
Q 008779 266 TRFRITRTLEQNATKIVHKW 285 (554)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~ 285 (554)
..|.+.++..+.+.++....
T Consensus 270 ~vf~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 270 QVFYIGTNDPAVLTEIRRHI 289 (564)
T ss_pred eEEEEeCCCHHHHHHHHHHH
Confidence 89888887655555554433
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.90 E-value=9.2e-24 Score=214.84 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=134.7
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecC-CCcEEEcCCCCEEEEcCCCcH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLIN-LSKISVDAKQKTAWVQSGATL 165 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~-l~~i~vd~~~~~v~v~aG~~~ 165 (554)
....|.+++.|+|++||+++|++|+++++|+.++|+|||+...+.+.+ |++|+|++ |+.|++ ++.+++|+||+.+
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~ 102 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPL 102 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcH
Confidence 346899999999999999999999999999999999999765443333 89999998 998865 4578999999999
Q ss_pred HHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCcccccc-ccccceeEEEEEecCCeeeccCCCCcchHHHHhccC
Q 008779 166 GQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFG-LAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGG 244 (554)
Q Consensus 166 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 244 (554)
.+|.+++.++|+ .|.+..++++| ..||+.+++.+.|| ...|+|+++++|+++|++++.. ..|++|++|++.
T Consensus 103 ~~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~ 174 (298)
T PRK13905 103 IKLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSA 174 (298)
T ss_pred HHHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcccc
Confidence 999999999985 23344444555 23566666667777 6889999999999999999754 359999999987
Q ss_pred CC-CceEEEEEEEEEEecC
Q 008779 245 GT-SFGVVVAWKLRLVTVP 262 (554)
Q Consensus 245 ~g-~fGiVt~~t~~l~p~p 262 (554)
.+ .+||||+++||++|..
T Consensus 175 ~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 175 LQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 44 3899999999999963
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=2e-22 Score=199.36 Aligned_cols=188 Identities=20% Similarity=0.275 Sum_probs=169.5
Q ss_pred ccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCE
Q 008779 78 AQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKT 156 (554)
Q Consensus 78 ~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~ 156 (554)
.+|..|-...+..-..|..|+|++||++++++|+++++.|.++||-++..|.+.+.- +-||++|.+||+| ++|+-.++
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGi 155 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGI 155 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccce
Confidence 346678877788999999999999999999999999999999999999998888764 3799999999999 99999999
Q ss_pred EEEcCCCcHHHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec------cC
Q 008779 157 AWVQSGATLGQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD------RK 230 (554)
Q Consensus 157 v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~------~~ 230 (554)
+++++|+.+.++..+|+++|+-+.+.-|.-.++-|||.+++.+-|..--+||..+-+|+++|+|+|+|+|+. ..
T Consensus 156 l~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKD 235 (511)
T KOG1232|consen 156 LKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKD 235 (511)
T ss_pred EEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhccc
Confidence 999999999999999999986555555878889999999999999999999999999999999999999985 34
Q ss_pred CCCcchHHHHhccCCCCceEEEEEEEEEEecCCeEEE
Q 008779 231 SMGQDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTR 267 (554)
Q Consensus 231 ~~~~dl~~a~rg~~~g~fGiVt~~t~~l~p~p~~~~~ 267 (554)
..+.|+-....|+. |++||||++++-+.|.|+.+..
T Consensus 236 NTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 236 NTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred CccccchhheecCC-ceeeEEeeEEEeecCCCcceeE
Confidence 56789999999998 9999999999999999986543
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=4.9e-21 Score=194.61 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=132.2
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEEcCCCCEEEEcCCCcHH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQSGATLG 166 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~ 166 (554)
....|.++++|+|++||++++++|+++++|+.++|||||+...+.+.+ |++|+|++|+.|+++ +.+++|++|+.+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 456799999999999999999999999999999999999874443333 899999989999876 4589999999999
Q ss_pred HHHHHHHhhCC-CcccCCCCCCcccchhhhcCCCCCCcccccc-ccccceeEEEEEecCCeeeccCCCCcchHHHHhccC
Q 008779 167 QLYYRIADKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFG-LAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGG 244 (554)
Q Consensus 167 ~l~~~l~~~g~-~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 244 (554)
+|.+++.++|+ |+.++.|.+++|| |+.+++++.|| ...|.+.+++|++++|++++... .|+.|+||.+.
T Consensus 109 ~L~~~~~~~gl~Gle~~~giPGtVG-------Gav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~--~e~~f~YR~s~ 179 (305)
T PRK12436 109 DVSRIALDHNLTGLEFACGIPGSVG-------GALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK--EAFEFGYRKSV 179 (305)
T ss_pred HHHHHHHHcCCccchhhcCCccchh-------HHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH--HHhcCcCCCCc
Confidence 99999999986 5555555555433 55555566677 55688889999999999997543 48999999884
Q ss_pred CC-CceEEEEEEEEEEec
Q 008779 245 GT-SFGVVVAWKLRLVTV 261 (554)
Q Consensus 245 ~g-~fGiVt~~t~~l~p~ 261 (554)
.. ...||++++||+.+.
T Consensus 180 ~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 180 FANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCCEEEEEEEEEEcCC
Confidence 32 357999999999874
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.84 E-value=6.6e-21 Score=192.09 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=140.0
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEEcCCCCEEEEcCCCcHH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQSGATLG 166 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~ 166 (554)
....|.++++|+|++||++++++|+++++|+.++|||||+...+.+.+ +++|++++|+++.+++ +.+++|+||+.+.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 456899999999999999999999999999999999999887665444 8999999999887776 5799999999999
Q ss_pred HHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCcccccccccc-ceeEEEEEecCCeeeccCCCCcchHHHHhccCC
Q 008779 167 QLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAAD-NIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGG 245 (554)
Q Consensus 167 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d-~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~ 245 (554)
+|.+++.++|+ .|.+..+||+|. .||+.+++++.||...+ +|+++++|+++|++++... .|+.|+||-+..
T Consensus 86 ~l~~~~~~~Gl-----~GlE~l~giPGt-vGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNGL-----SGLEFLAGIPGT-VGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCCC-----cccccCCCCCch-HHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCcccc
Confidence 99999999873 478888888884 68899999999999875 7899999999999987543 599999997753
Q ss_pred CC-c-eEEEEEEEEEEe
Q 008779 246 TS-F-GVVVAWKLRLVT 260 (554)
Q Consensus 246 g~-f-GiVt~~t~~l~p 260 (554)
.. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 22 2 599999999844
No 20
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.84 E-value=3.2e-20 Score=184.02 Aligned_cols=190 Identities=18% Similarity=0.272 Sum_probs=161.8
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCC-CCccccCCC--eEEEEecCCCcE-EEcCCCCEEE
Q 008779 83 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFE-GLSYVSQVP--FVVIDLINLSKI-SVDAKQKTAW 158 (554)
Q Consensus 83 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~-~~~~~~~~~--gvvIdl~~l~~i-~vd~~~~~v~ 158 (554)
|.....+.|..||.|+..+||+++|+.|.++++-+.+.|||+|.. +..++.+.. -+.+||+.||+| -+|.++-|+.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 444567799999999999999999999999999999999999976 567766543 344677899998 8999999999
Q ss_pred EcCCCcHHHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec-----cCCCC
Q 008779 159 VQSGATLGQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD-----RKSMG 233 (554)
Q Consensus 159 v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~-----~~~~~ 233 (554)
+++|++-.+|.+.|.+.|....--+.+..-.++||++++.+.|+--..||.+-|-|+.+++|+|.|.+.. +-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999874222223344457899999999999999999999999999999999998874 33468
Q ss_pred cchHHHHhccCCCCceEEEEEEEEEEecCCeEEEEEEeec
Q 008779 234 QDLFWAIRGGGGTSFGVVVAWKLRLVTVPSTVTRFRITRT 273 (554)
Q Consensus 234 ~dl~~a~rg~~~g~fGiVt~~t~~l~p~p~~~~~~~~~~~ 273 (554)
||+-.-+.|+. |++||||++++|+.|+|+......+.|+
T Consensus 313 PDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFP 351 (613)
T KOG1233|consen 313 PDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFP 351 (613)
T ss_pred CCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccC
Confidence 99999999998 9999999999999999986655555565
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=2.1e-20 Score=189.62 Aligned_cols=163 Identities=20% Similarity=0.192 Sum_probs=132.9
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecC-CCcEEEcCCCCEEEEcCCCcH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLIN-LSKISVDAKQKTAWVQSGATL 165 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~-l~~i~vd~~~~~v~v~aG~~~ 165 (554)
....|.++++|+|++||++++++|+++++|+.++|||||....+.+.+ |++|+|++ ++.++++ +.+++||||+.+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 456899999999999999999999999999999999999864333333 89999976 5656554 469999999999
Q ss_pred HHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccc-cccccccceeEEEEEecCCeeeccCCCCcchHHHHhccC
Q 008779 166 GQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLR-KFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGG 244 (554)
Q Consensus 166 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~-~~G~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 244 (554)
.+|.+++.++|+ .|.++.+||+| ..||+..++++ +||.+.|+|+++++|+++| +.... ..|+.|+||.+.
T Consensus 108 ~~L~~~~~~~GL-----~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHGL-----VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcCC-----cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceec
Confidence 999999999883 27777788888 44666777665 6668899999999999999 44332 259999999875
Q ss_pred CCCceEEEEEEEEEEecC
Q 008779 245 GTSFGVVVAWKLRLVTVP 262 (554)
Q Consensus 245 ~g~fGiVt~~t~~l~p~p 262 (554)
.+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 333489999999999953
No 22
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=3.6e-20 Score=191.04 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=133.4
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEEcCCCCEEEEcCCCcHH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQSGATLG 166 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~ 166 (554)
....+.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ |+||+++ ++.++++.+..+++|++|+.|.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 455788999999999999999999999999999999999875444343 8999997 5889887667799999999999
Q ss_pred HHHHHHHhhCC-CcccCCCCCCcccchhhhcCCCCCCcccccc-ccccceeEEEEEecC-CeeeccCCCCcchHHHHhcc
Q 008779 167 QLYYRIADKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFG-LAADNIVDAHLIDAR-GRLLDRKSMGQDLFWAIRGG 243 (554)
Q Consensus 167 ~l~~~l~~~g~-~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~-G~v~~~~~~~~dl~~a~rg~ 243 (554)
+|.+++.++|+ |+.+..|.+++||.+..+ +.+.|| ...|+|.++++++.+ |++++.. +.||+|+||++
T Consensus 106 ~l~~~a~~~GL~GlE~laGIPGTVGGAv~m-------NaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S 176 (363)
T PRK13903 106 DVVARTVEAGLGGLECLSGIPGSAGATPVQ-------NVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTS 176 (363)
T ss_pred HHHHHHHHcCCccccccCCCCcchhhHhhc-------CCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceecccc
Confidence 99999999986 565666666666544444 444455 457999999999965 9998754 36999999997
Q ss_pred CC--CCceEEEEEEEEEEecC
Q 008779 244 GG--TSFGVVVAWKLRLVTVP 262 (554)
Q Consensus 244 ~~--g~fGiVt~~t~~l~p~p 262 (554)
.. ++++|||+++|++.|..
T Consensus 177 ~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 177 VLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred ccCCCCCEEEEEEEEEEEcCC
Confidence 32 34789999999999863
No 23
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=2.4e-20 Score=189.56 Aligned_cols=161 Identities=21% Similarity=0.217 Sum_probs=135.3
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEEcCCCCEEEEcCCCcHHH
Q 008779 88 TPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQSGATLGQ 167 (554)
Q Consensus 88 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~ 167 (554)
...+.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ |++|+|++|++|+++. .+++||||+.+.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~ 109 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIID 109 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHH
Confidence 45788999999999999999999999999999999999875444443 8999998999998863 5899999999999
Q ss_pred HHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCcccccc-ccccceeEEEEEecCCeeeccCCCCcchHHHHhccCCC
Q 008779 168 LYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFG-LAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGT 246 (554)
Q Consensus 168 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~g 246 (554)
|.+++.++|+ .|.+..+||+| ..||+..++++.|| .+.|+|+++++|+++|++++... .|+.|+||.+...
T Consensus 110 l~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~~~ 181 (307)
T PRK13906 110 VSRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSIIQ 181 (307)
T ss_pred HHHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCcccCC
Confidence 9999999874 35666677888 45677777778886 78899999999999999997543 4899999977533
Q ss_pred C-ceEEEEEEEEEEe
Q 008779 247 S-FGVVVAWKLRLVT 260 (554)
Q Consensus 247 ~-fGiVt~~t~~l~p 260 (554)
. --||++++|++.|
T Consensus 182 ~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 182 KEHLVVLEAAFTLAP 196 (307)
T ss_pred CCCEEEEEEEEEECC
Confidence 2 2499999999986
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=9.6e-19 Score=177.07 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=137.2
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCC-cEEEcCCCCEEEEcCCCcH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLS-KISVDAKQKTAWVQSGATL 165 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~-~i~vd~~~~~v~v~aG~~~ 165 (554)
......+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ |+||++++++ ++..+.+..+++|+||+.|
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 355778899999999999999999999999999999999987776665 8999998754 6766665558999999999
Q ss_pred HHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeeccCCCCcchHHHHhccCC
Q 008779 166 GQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGG 245 (554)
Q Consensus 166 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~ 245 (554)
.+|.+++.++|+ .|..+.+||+|.++|+.+++....++...|+|.++++++.+|++++... .||+|+||-+..
T Consensus 95 ~~l~~~~~~~GL-----~GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~S~~ 167 (295)
T PRK14649 95 AGTARRLAAQGW-----AGLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRTSVL 167 (295)
T ss_pred HHHHHHHHHcCC-----ccccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCcccceeec
Confidence 999999999883 5667888999966555666666666678899999999999999987543 499999998753
Q ss_pred CCc---------eEEEEEEEEEEec
Q 008779 246 TSF---------GVVVAWKLRLVTV 261 (554)
Q Consensus 246 g~f---------GiVt~~t~~l~p~ 261 (554)
... -||++++|++.+.
T Consensus 168 ~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 168 KQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ccccccccccCCeEEEEEEEEECCC
Confidence 321 2999999999874
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=9.2e-17 Score=162.04 Aligned_cols=161 Identities=19% Similarity=0.253 Sum_probs=131.9
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEEcCCCCEEEEcCCCcHH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQSGATLG 166 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~ 166 (554)
......+++.|+|++|+++++++|++ ++|+.+.|+|+|....+.+.+ |+||.+.+|+.++++. ..++|+||+.+.
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~~--~~v~v~AG~~l~ 104 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVDN--DKIICESGLSLK 104 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEeC--CEEEEeCCCcHH
Confidence 34467789999999999999999999 999999999999887776665 8999997899998873 589999999999
Q ss_pred HHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccc-cccceeEEEEEecCCeeeccCCCCcchHHHHhccCC
Q 008779 167 QLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGG 245 (554)
Q Consensus 167 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~ 245 (554)
+|.+++.++|+ .|....+||+|.+ ||+.-++++.||. ..|.|.++++++ +|++++... .|+-|.||-+..
T Consensus 105 ~L~~~~~~~GL-----~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~--~e~~f~YR~S~~ 175 (297)
T PRK14653 105 KLCLVAAKNGL-----SGFENAYGIPGSV-GGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK--NEIKFSYRNSIF 175 (297)
T ss_pred HHHHHHHHCCC-----cchhhhcCCchhH-HHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch--hhccccCccccC
Confidence 99999999985 3444455556653 5666677778887 779999999999 788876443 489999997653
Q ss_pred CC--ceEEEEEEEEEEec
Q 008779 246 TS--FGVVVAWKLRLVTV 261 (554)
Q Consensus 246 g~--fGiVt~~t~~l~p~ 261 (554)
+. --||++++|++.|.
T Consensus 176 ~~~~~~iI~~a~f~L~~~ 193 (297)
T PRK14653 176 KEEKDLIILRVTFKLKKG 193 (297)
T ss_pred CCCCcEEEEEEEEEEecC
Confidence 32 12999999999985
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.1e-15 Score=151.35 Aligned_cols=166 Identities=20% Similarity=0.246 Sum_probs=139.3
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEEcCCCCEEEEcCCCcH
Q 008779 86 PNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQSGATL 165 (554)
Q Consensus 86 ~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~ 165 (554)
+.......++.|++++|++++++.+.+.++|+.+.|+|+|....+.+.+ +++|.+.+++.++++.+...+++++|+.|
T Consensus 16 riGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~ 93 (291)
T COG0812 16 RIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPW 93 (291)
T ss_pred ecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcH
Confidence 3456788899999999999999999999999999999999876665554 89999999999988877779999999999
Q ss_pred HHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccc-cccceeEEEEEecCCeeeccCCCCcchHHHHhccC
Q 008779 166 GQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGG 244 (554)
Q Consensus 166 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 244 (554)
.+|.+++.++|+ .|...-+||+|.+ ||+.-|+.+.||. ..|.+.++++++.+|++..... .||-|+||-+.
T Consensus 94 ~~l~~~~~~~gl-----~GlE~l~gIPGsv-Ggav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~--~el~f~YR~S~ 165 (291)
T COG0812 94 HDLVRFALENGL-----SGLEFLAGIPGSV-GGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA--EELGFGYRTSP 165 (291)
T ss_pred HHHHHHHHHcCC-----cchhhhcCCCccc-chhhhccCcccccchheeEEEEEEEcCCCCEEEEEH--HHhCcccccCc
Confidence 999999999984 4555556666666 4666667788885 5699999999999999997543 49999999776
Q ss_pred CCCc-eEEEEEEEEEEec
Q 008779 245 GTSF-GVVVAWKLRLVTV 261 (554)
Q Consensus 245 ~g~f-GiVt~~t~~l~p~ 261 (554)
...- .||++++|++.|-
T Consensus 166 f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 166 FKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCCEEEEEEEEEeCCC
Confidence 4333 8999999999985
No 27
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.63 E-value=1.5e-16 Score=115.11 Aligned_cols=47 Identities=47% Similarity=0.825 Sum_probs=34.8
Q ss_pred ccccCCCCCcCCCCCCCcchhhhhhhhhhhhhccHHHHHHhhhhcCCCCCCCCCCCCC
Q 008779 485 AYVNYRDLDIGTNNQGYTSIEQASIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSIP 542 (554)
Q Consensus 485 ~Y~NY~d~d~~~~~~~~~~~~~~~~yg~~Yfg~n~~RL~~iK~kyDP~nvF~~~qsI~ 542 (554)
+|+||+|.+++ .+.|...|||+|++||++||++|||+|+|+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999998865 137889999999999999999999999999999997
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=2.5e-15 Score=151.20 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=133.0
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccc-cCCCeEEEEecCCCcEEEcCCCCEEEEcCCCcH
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYV-SQVPFVVIDLINLSKISVDAKQKTAWVQSGATL 165 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~-~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~ 165 (554)
.......++.|+|++|+++++++++++++|+.+.|+|+|....+.+ .+ |+||.+.+|+.++++. ..++|+||+.|
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~ 104 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNF 104 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcH
Confidence 3446677888999999999999999999999999999998776654 44 8999887799998863 47999999999
Q ss_pred HHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccc-cccceeEEEEEecCCeeeccCCCCcchHHHHhccC
Q 008779 166 GQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGG 244 (554)
Q Consensus 166 ~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~ 244 (554)
.+|.+++.++|+ .|....+||+|.+ ||+.-++.+.||. ..|.|.++++++.+|++++... .|+-|+||-+.
T Consensus 105 ~~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~--~e~~f~YR~S~ 176 (302)
T PRK14650 105 EDLCKFALQNEL-----SGLEFIYGLPGTL-GGAIWMNARCFGNEISEILDKITFIDEKGKTICKKF--KKEEFKYKISP 176 (302)
T ss_pred HHHHHHHHHcCC-----chhhhhcCCCcch-hHHHHhhCCccccchheeEEEEEEEECCCCEEEEEH--HHcCccccccc
Confidence 999999999984 4555566677766 4555666777885 5699999999999999987443 58999999765
Q ss_pred CCC-ceEEEEEEEEEEecC
Q 008779 245 GTS-FGVVVAWKLRLVTVP 262 (554)
Q Consensus 245 ~g~-fGiVt~~t~~l~p~p 262 (554)
... -.||++++|++.|..
T Consensus 177 f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 177 FQNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 321 249999999998854
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.61 E-value=2.9e-15 Score=152.98 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=131.6
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEEc-CCC--CEEEEcCCC
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVD-AKQ--KTAWVQSGA 163 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~vd-~~~--~~v~v~aG~ 163 (554)
.-.....++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.. |+||.+ +|+.++++ .+. .+++|+||+
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCC
Confidence 34467779999999999999999999999999999999987766 454 899988 49999873 222 279999999
Q ss_pred cHHHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccc-cccceeEEEEEecC-CeeeccCCCCcchHHHHh
Q 008779 164 TLGQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDAR-GRLLDRKSMGQDLFWAIR 241 (554)
Q Consensus 164 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~-G~v~~~~~~~~dl~~a~r 241 (554)
.|.+|.+++.++|+ .|....+||+|.+ ||+.-++.+.||. ..|.|.++++++.+ |++++... .|+.|+||
T Consensus 93 ~~~~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~--~e~~f~YR 164 (334)
T PRK00046 93 NWHDLVLWTLQQGM-----PGLENLALIPGTV-GAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA--AECRFGYR 164 (334)
T ss_pred cHHHHHHHHHHcCc-----hhhHHhcCCCcch-hHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH--HHcCcccc
Confidence 99999999999984 4556667777776 4556667778885 56999999999987 99887443 59999999
Q ss_pred ccCCCC----ceEEEEEEEEEEec
Q 008779 242 GGGGTS----FGVVVAWKLRLVTV 261 (554)
Q Consensus 242 g~~~g~----fGiVt~~t~~l~p~ 261 (554)
-+.... --||++++|++.|-
T Consensus 165 ~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 165 DSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccCCCCCcCCEEEEEEEEEecCC
Confidence 775332 23999999999984
No 30
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.57 E-value=2.7e-15 Score=149.62 Aligned_cols=167 Identities=22% Similarity=0.229 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCC---CeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHHHHHH
Q 008779 98 LDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQV---PFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLYYRIA 173 (554)
Q Consensus 98 ~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~---~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~ 173 (554)
+.+.+||+-|+..+..+-+-.+..+.-+|...+....+ ...-|++..|..| ++|.+.+||+|+|+++++|+.++|.
T Consensus 61 qrVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~li 140 (543)
T KOG1262|consen 61 QRVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLI 140 (543)
T ss_pred HHHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhc
Confidence 34567777777766677666666777777654443321 2355777766665 9999999999999999999999999
Q ss_pred hhCCCcccCCCCCCcccchhhhcCCCCCCccccccccccceeEEEEEecCCeeec--cCCCCcchHHHHhccCCCCceEE
Q 008779 174 DKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDARGRLLD--RKSMGQDLFWAIRGGGGTSFGVV 251 (554)
Q Consensus 174 ~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~v~~--~~~~~~dl~~a~rg~~~g~fGiV 251 (554)
+.|+.|++. ......++||.+.|-|+-..|.+||+..+.+.+.|||++||++++ .+++++|||+|+-.+. |++|..
T Consensus 141 p~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfL 218 (543)
T KOG1262|consen 141 PKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFL 218 (543)
T ss_pred cCCceeeee-cccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEccccc-Cchhee
Confidence 988554433 334679999999999999999999999999999999999999996 4457899999999999 999999
Q ss_pred EEEEEEEEecCCeEE
Q 008779 252 VAWKLRLVTVPSTVT 266 (554)
Q Consensus 252 t~~t~~l~p~p~~~~ 266 (554)
+.+|+|+.|..+.+.
T Consensus 219 VaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 219 VAATIRIIKVKKYVK 233 (543)
T ss_pred eeeEEEEEeccceEE
Confidence 999999999988654
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=2.1e-14 Score=146.38 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=130.4
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEE---cCCCCEEEEcCCC
Q 008779 87 NTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISV---DAKQKTAWVQSGA 163 (554)
Q Consensus 87 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~v---d~~~~~v~v~aG~ 163 (554)
.......++.|+|.+|+++++++++++++|+.+.|+|+|....+.+.. |+||.+.+|+.+++ +.+...++|++|+
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~ 103 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGL 103 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCC
Confidence 345677899999999999999999999999999999999887666565 89999977999875 2232479999999
Q ss_pred cHHHHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccc-cccceeEEEEE--------------------ec
Q 008779 164 TLGQLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLI--------------------DA 222 (554)
Q Consensus 164 ~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV--------------------~~ 222 (554)
.|.+|..++.++|+ .|....+||+|.+ ||+.-++.+.||. ..|.|.+++++ +.
T Consensus 104 ~~~~Lv~~~~~~gl-----~GlE~laGIPGTV-GGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~ 177 (354)
T PRK14648 104 PVAALLAFCAHHAL-----RGLETFAGLPGSV-GGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDK 177 (354)
T ss_pred cHHHHHHHHHHcCC-----cchhhhcCCCcch-hhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccC
Confidence 99999999999984 5566667777776 4555566788885 56999999999 45
Q ss_pred CCee-------------eccCCCCcchHHHHhccCCCC---------ceEEEEEEEEEEec
Q 008779 223 RGRL-------------LDRKSMGQDLFWAIRGGGGTS---------FGVVVAWKLRLVTV 261 (554)
Q Consensus 223 ~G~v-------------~~~~~~~~dl~~a~rg~~~g~---------fGiVt~~t~~l~p~ 261 (554)
+|++ ++. ...|+.|+||-+.... --||++++|++.|.
T Consensus 178 ~g~~~~~~~~~~~~~~~~~~--~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~ 236 (354)
T PRK14648 178 RGECLGLDGGPFTCSSFQTV--FARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPG 236 (354)
T ss_pred CCceecccccccccccceEe--cHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCC
Confidence 5665 222 2358999999875332 13999999999875
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.42 E-value=8.7e-13 Score=131.03 Aligned_cols=152 Identities=22% Similarity=0.226 Sum_probs=118.0
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecC-CCcEEEcCCCCEEEEcCCCcHH
Q 008779 88 TPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLIN-LSKISVDAKQKTAWVQSGATLG 166 (554)
Q Consensus 88 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~-l~~i~vd~~~~~v~v~aG~~~~ 166 (554)
..-|+.++.|+|++|+++++ ++|+.+.|+|+|....+.+.+ |+||.+.+ ++.++++. +|++|+.|.
T Consensus 17 iGG~A~~~~p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~ 83 (273)
T PRK14651 17 VGGPAELWTVETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLP 83 (273)
T ss_pred cCceEEEEecCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHH
Confidence 33444444499999999988 589999999999887666555 89998866 66666542 699999999
Q ss_pred HHHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccc-cccceeEEEEEecCCeeeccCCCCcchHHHHhccCC
Q 008779 167 QLYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGG 245 (554)
Q Consensus 167 ~l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~ 245 (554)
+|.+++.++|+ .|....+||+|.+ ||+.-++.+.||. ..|.|.++++++ +|++++... .|+.|+||-+..
T Consensus 84 ~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~--~e~~f~YR~S~~ 154 (273)
T PRK14651 84 GLVRRAARLGL-----SGLEGLVGIPAQV-GGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP--DELGFGYRHSGL 154 (273)
T ss_pred HHHHHHHHCCC-----cchhhhcCCCcch-hhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH--HHccccccccCC
Confidence 99999999984 4555666677766 4555666777885 569999999997 899887543 599999997753
Q ss_pred CCceEEEEEEEEEEec
Q 008779 246 TSFGVVVAWKLRLVTV 261 (554)
Q Consensus 246 g~fGiVt~~t~~l~p~ 261 (554)
..--||++++|++.|-
T Consensus 155 ~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 155 PPGHVVTRVRLKLRPS 170 (273)
T ss_pred CCCEEEEEEEEEECCC
Confidence 3224999999999884
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.04 E-value=7.3e-10 Score=109.18 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=108.5
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcEEEcCCCCEEEEcCCCcHHH
Q 008779 88 TPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKISVDAKQKTAWVQSGATLGQ 167 (554)
Q Consensus 88 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~ 167 (554)
-.....++.|++.+ + ++|+.+.|+|+|....+.+.+ +++ -+++|+.++++. .+++|++|+.+.+
T Consensus 16 GG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~ 79 (257)
T PRK13904 16 GPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGK 79 (257)
T ss_pred CceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHH
Confidence 33555677788877 6 899999999999876665532 454 346688898854 4799999999999
Q ss_pred HHHHHHhhCCCcccCCCCCCcccchhhhcCCCCCCccccccc-cccceeEEEEEecCCeeeccCCCCcchHHHHhccCCC
Q 008779 168 LYYRIADKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGGGGT 246 (554)
Q Consensus 168 l~~~l~~~g~~l~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~~~g 246 (554)
|.+++.++|+ .|....+||+|.+ ||+.-++.+.||. ..|.|.++++++ |++ ...|+.|+||-+...
T Consensus 80 l~~~~~~~gl-----~GlE~l~gIPGtV-GGAv~mNaGa~g~ei~d~l~~V~~~~--~~~-----~~~e~~f~YR~S~~~ 146 (257)
T PRK13904 80 IFNYAKKNNL-----GGFEFLGKLPGTL-GGLVKMNAGLKEYEISNNLESICTNG--GWI-----EKEDIGFGYRSSGIN 146 (257)
T ss_pred HHHHHHHCCC-----chhhhhcCCCccH-HHHHHhcCCcCccchheeEEEEEEEe--eEE-----eHHHCcccccCcCCC
Confidence 9999999984 4555566677766 3555556777775 569999999998 422 235899999977522
Q ss_pred CceEEEEEEEEEEecC
Q 008779 247 SFGVVVAWKLRLVTVP 262 (554)
Q Consensus 247 ~fGiVt~~t~~l~p~p 262 (554)
.||++++||+.|..
T Consensus 147 --~iIl~a~f~l~~~~ 160 (257)
T PRK13904 147 --GVILEARFKKTHGF 160 (257)
T ss_pred --cEEEEEEEEECCCC
Confidence 59999999999854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.47 E-value=0.002 Score=60.27 Aligned_cols=104 Identities=17% Similarity=0.290 Sum_probs=63.5
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCC-ccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHH
Q 008779 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGL-SYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQL 168 (554)
Q Consensus 91 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~-~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l 168 (554)
+..++.|+|.+|+.++++ .+-...+.+||++.... ..+......+||++++..+ .|..+++.+++|+++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 346889999999999998 33468999999985321 1111112589999986544 33334678999999999999
Q ss_pred HHH---------HHhhCCCcccCC-CCCCcccchhhhcCCCC
Q 008779 169 YYR---------IADKSKNLGFPG-GVCPTVGVGGHFSGGGY 200 (554)
Q Consensus 169 ~~~---------l~~~g~~l~~~~-g~~~~vgigG~~~ggg~ 200 (554)
.+. |.++-. .+.. ..-+..++||.+..+..
T Consensus 78 ~~~~~~~~~~p~L~~~~~--~ias~~IRn~aTiGGNl~~~~~ 117 (171)
T PF00941_consen 78 EESPLIQQYFPALAQAAR--RIASPQIRNRATIGGNLCNASP 117 (171)
T ss_dssp HHHHHHHHHHHHHHHHHC--TSS-HHHHTT-BHHHHHHHTBT
T ss_pred hhcchhhhhHHHHHHHHH--HhCCHhHeeeeeeccccccCcc
Confidence 876 222110 0111 22356789999955543
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=96.16 E-value=0.019 Score=57.41 Aligned_cols=139 Identities=13% Similarity=0.063 Sum_probs=84.8
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHHHH
Q 008779 93 VIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLYYR 171 (554)
Q Consensus 93 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~ 171 (554)
.+..|+|.+|+.++++. ++-..++.+||++.... .......++||++++ .. .|..+.+.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~-~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNAT-PTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhh-hCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 46789999999988763 43346789999997422 122223689999975 44 44445679999999999999863
Q ss_pred H------HhhCCCcccCC-CCCCcccchhhhcCCCCCCccccccccccc-----eeEEEEEecCCeeeccCCCCcchHHH
Q 008779 172 I------ADKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADN-----IVDAHLIDARGRLLDRKSMGQDLFWA 239 (554)
Q Consensus 172 l------~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~-----v~~~~vV~~~G~v~~~~~~~~dl~~a 239 (554)
. .+.- ..+.. ..-+..+|||.+..+.- ..|. .++.+|+..+++.+.. .|+|
T Consensus 79 ~~~~~~L~~a~--~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~-- 141 (258)
T PRK09799 79 RFIPAALREAL--GFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL-- 141 (258)
T ss_pred cccHHHHHHHH--HHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc--
Confidence 2 2211 00111 22356788999875421 1232 2566777666644322 2433
Q ss_pred HhccCCCCceEEEEEEEE
Q 008779 240 IRGGGGTSFGVVVAWKLR 257 (554)
Q Consensus 240 ~rg~~~g~fGiVt~~t~~ 257 (554)
.|.. -.|||++.+.
T Consensus 142 -~g~~---~Eil~~I~iP 155 (258)
T PRK09799 142 -ACPC---DRLLTEIIIP 155 (258)
T ss_pred -CCCC---CcEEEEEEcC
Confidence 2222 2599988765
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=95.34 E-value=0.066 Score=53.49 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=81.4
Q ss_pred EEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHHHH-
Q 008779 94 IITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLYYR- 171 (554)
Q Consensus 94 vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~- 171 (554)
++.|+|.+|..++++. ++-.-++.+|||++...-. .....++||++++ .. .|..+.+.+++|+++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 6789999999887663 3334578899999742211 1123588999875 43 34445578999999999998752
Q ss_pred -----HHhhCCCcccC-CCCCCcccchhhhcCCCCCCcccccccc--ccceeEEEEEecCCeeeccCCCCcchHHHHhcc
Q 008779 172 -----IADKSKNLGFP-GGVCPTVGVGGHFSGGGYGIMLRKFGLA--ADNIVDAHLIDARGRLLDRKSMGQDLFWAIRGG 243 (554)
Q Consensus 172 -----l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~--~d~v~~~~vV~~~G~v~~~~~~~~dl~~a~rg~ 243 (554)
|.+.- ..+- ...-+..+|||.+..+.-. +-. .=..++.+|+..+++.+.. .|+| .|.
T Consensus 79 ~~~~~L~~aa--~~va~~qIRN~gTlGGNl~~a~p~------~D~~~~LlaldA~v~l~~~r~vp~----~dF~---~g~ 143 (257)
T TIGR03312 79 LTPAALKEAL--GFVYSRHIRNQATIGGEIAAFQSE------SLLLPVLLALKATVVLANASQMDI----EDYL---ASE 143 (257)
T ss_pred chHHHHHHHH--HHhCCHHHhccccHHHHhhcCCCc------hHHHHHHHHcCCEEEEecCcEEeH----HHhc---CCC
Confidence 22211 0111 1234667899998755321 110 1122455666555543321 2433 222
Q ss_pred CCCCceEEEEEEEE
Q 008779 244 GGTSFGVVVAWKLR 257 (554)
Q Consensus 244 ~~g~fGiVt~~t~~ 257 (554)
. + -+|+++.+.
T Consensus 144 ~-~--Ell~~V~iP 154 (257)
T TIGR03312 144 Q-R--ELIVEVIIP 154 (257)
T ss_pred C-C--cEEEEEEcC
Confidence 2 2 588888765
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.40 E-value=0.07 Score=54.39 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=64.3
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCC-CCccccCCCeEEEEecCCCcE-EEc-CCCCEEEEcCCCcHHHHH
Q 008779 93 VIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFE-GLSYVSQVPFVVIDLINLSKI-SVD-AKQKTAWVQSGATLGQLY 169 (554)
Q Consensus 93 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~-~~~~~~~~~gvvIdl~~l~~i-~vd-~~~~~v~v~aG~~~~~l~ 169 (554)
.++.|+|.+|..++++. +. ..++.+||+++. ....+......+||++++... .|. .+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57899999999988774 22 467899999963 222222223688999986543 333 234679999999999998
Q ss_pred H--HHHhhCCC----cc-c-CCCCCCcccchhhhcCCC
Q 008779 170 Y--RIADKSKN----LG-F-PGGVCPTVGVGGHFSGGG 199 (554)
Q Consensus 170 ~--~l~~~g~~----l~-~-~~g~~~~vgigG~~~ggg 199 (554)
+ .+.+.-.. +. + ....-+..+|||.+..+.
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 5 12111000 00 1 112346678899887543
No 38
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=93.83 E-value=0.12 Score=51.78 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=25.4
Q ss_pred hhhhhhhhhccHHHHHHhhhhcCCCCCCCCCCCC
Q 008779 508 SIWGNKYFKNNFKRLVHVKTMVDPHNFFRNEQSI 541 (554)
Q Consensus 508 ~~yg~~Yfg~n~~RL~~iK~kyDP~nvF~~~qsI 541 (554)
+.|. ..||..++|+++.|++|||.+++.--|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 3684 79999999999999999999999998887
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.69 E-value=0.29 Score=53.28 Aligned_cols=152 Identities=17% Similarity=0.202 Sum_probs=88.4
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCC-CccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHH
Q 008779 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEG-LSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQL 168 (554)
Q Consensus 91 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~-~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l 168 (554)
...++.|+|.+|+.++++. +. ..++.+||++... ..........+||++++..+ .|..+++.+++|+++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988864 22 4678999999632 11222223689999986544 34345578999999999999
Q ss_pred HHHHHhhCCC----c-ccCC-CCCCcccchhhhcCCCCCCccccccccccce-----e--EEEEEecCCeeeccCCCCcc
Q 008779 169 YYRIADKSKN----L-GFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNI-----V--DAHLIDARGRLLDRKSMGQD 235 (554)
Q Consensus 169 ~~~l~~~g~~----l-~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v-----~--~~~vV~~~G~v~~~~~~~~d 235 (554)
.+.+.++-.. + .+.+ ..-+..+|||.+..+.- ..|.. + .+++...+|+....- .|
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~vpl---~d 335 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTLPL---ED 335 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEEeH---HH
Confidence 8766543100 0 0111 23456778888865432 12322 3 334445566322111 25
Q ss_pred hHHHHhccCCCCceEEEEEEEEE
Q 008779 236 LFWAIRGGGGTSFGVVVAWKLRL 258 (554)
Q Consensus 236 l~~a~rg~~~g~fGiVt~~t~~l 258 (554)
+|-.++--.-..-.||+++.+..
T Consensus 336 F~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 336 FFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred hhcccccccCCCCceEEEEEecC
Confidence 55433311112225999998764
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=91.51 E-value=0.35 Score=49.88 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=62.8
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCC-CccccCCCeEEEEecCC---CcEEEcCCCCEEEEcCCCcHHHH
Q 008779 93 VIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEG-LSYVSQVPFVVIDLINL---SKISVDAKQKTAWVQSGATLGQL 168 (554)
Q Consensus 93 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~-~~~~~~~~gvvIdl~~l---~~i~vd~~~~~v~v~aG~~~~~l 168 (554)
.++.|+|.+|..++++.. + .-++.+||++... .-.+......+||+.++ +.|+. +.+.+++|+++++.++
T Consensus 6 ~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~--~~~~l~IGA~vT~~~l 79 (321)
T TIGR03195 6 RTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLST--LADGLRIGAGVTLAAL 79 (321)
T ss_pred eEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEe--cCCEEEEeccCcHHHH
Confidence 578999999999887642 2 3468999998521 11111223688999875 44554 4568999999999998
Q ss_pred HHH---------HHhhCCCcccCC-CCCCcccchhhhcCC
Q 008779 169 YYR---------IADKSKNLGFPG-GVCPTVGVGGHFSGG 198 (554)
Q Consensus 169 ~~~---------l~~~g~~l~~~~-g~~~~vgigG~~~gg 198 (554)
.+. |.+.-. .+.. ..-+..+|||.+.+.
T Consensus 80 ~~~~~i~~~~p~L~~a~~--~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 80 AEDALVRTRWPALAQAAR--AVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred hhChhhHhHhHHHHHHHH--HhCCHHHhCceecHHhhhcc
Confidence 642 222100 0111 233567899999853
No 41
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=90.52 E-value=0.7 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.2
Q ss_pred ccHHHHHHhhhhcCCCCCCCCC
Q 008779 517 NNFKRLVHVKTMVDPHNFFRNE 538 (554)
Q Consensus 517 ~n~~RL~~iK~kyDP~nvF~~~ 538 (554)
.++++-.+||+++||+++|.++
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 4899999999999999999865
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=90.49 E-value=0.33 Score=48.72 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCC-ccc-cCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHHHH--
Q 008779 97 PLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGL-SYV-SQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLYYR-- 171 (554)
Q Consensus 97 P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~-~~~-~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~-- 171 (554)
|+|.+|+.++++.. . ..++.+||+++... ... ......+||++++..+ .|..+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 78899998888753 2 36789999986321 111 1113688999986655 45556689999999999999642
Q ss_pred -------HHhhCCCcccC-CCCCCcccchhhhcCC
Q 008779 172 -------IADKSKNLGFP-GGVCPTVGVGGHFSGG 198 (554)
Q Consensus 172 -------l~~~g~~l~~~-~g~~~~vgigG~~~gg 198 (554)
|.+.- . .+- ...-+..++||.+..+
T Consensus 77 i~~~~p~L~~a~-~-~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAA-S-AIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHH-H-HhcCHHHhcceecHHhccCc
Confidence 11110 0 011 1223667899999765
No 43
>PLN02906 xanthine dehydrogenase
Probab=85.10 E-value=1.5 Score=53.78 Aligned_cols=79 Identities=9% Similarity=0.112 Sum_probs=56.0
Q ss_pred eEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCC-CccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHH
Q 008779 92 QVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEG-LSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLY 169 (554)
Q Consensus 92 ~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~-~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~ 169 (554)
...+.|+|.+|+.++++.. . ..++.+||+++.. .........++||++++..+ .|..+...+++|+++++.+|.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 4688999999999887642 1 3578899999632 11222223689999986554 344456689999999999999
Q ss_pred HHHHh
Q 008779 170 YRIAD 174 (554)
Q Consensus 170 ~~l~~ 174 (554)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86544
No 44
>PLN00192 aldehyde oxidase
Probab=84.60 E-value=2.2 Score=52.60 Aligned_cols=107 Identities=15% Similarity=0.205 Sum_probs=68.7
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHH
Q 008779 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLY 169 (554)
Q Consensus 91 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~ 169 (554)
....+.|+|.+|+.++++.....+-..++..||+++...- ......++||++++..+ .|..+.+.+++||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k-~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYK-DEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeee-ccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 4568999999999988764211122477889999964321 12223689999985554 344456789999999999998
Q ss_pred HHHHhhCCC----------c-ccCC-CCCCcccchhhhcCC
Q 008779 170 YRIADKSKN----------L-GFPG-GVCPTVGVGGHFSGG 198 (554)
Q Consensus 170 ~~l~~~g~~----------l-~~~~-g~~~~vgigG~~~gg 198 (554)
..+...... + .+.+ ..-+..+|||.+..+
T Consensus 312 ~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 312 EALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 765543100 0 0111 233566788988655
No 45
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=84.37 E-value=1.2 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=16.9
Q ss_pred ccHHHHHHhhhhcCCCCCCCCC
Q 008779 517 NNFKRLVHVKTMVDPHNFFRNE 538 (554)
Q Consensus 517 ~n~~RL~~iK~kyDP~nvF~~~ 538 (554)
.++++-.++|+++||+|+|.++
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--H
T ss_pred cCHHHHHHHHHHhCCCCCCCCH
Confidence 7999999999999999999763
No 46
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=83.12 E-value=1.2 Score=43.33 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCCcchHHHHHHHHHHHhccccccCCCCcccccCCCCCcCCCCCCCcchhhhhhhhhhhhhc-cHHHHHHhhhhcCCCCC
Q 008779 456 GDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGTNNQGYTSIEQASIWGNKYFKN-NFKRLVHVKTMVDPHNF 534 (554)
Q Consensus 456 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~Y~NY~d~d~~~~~~~~~~~~~~~~yg~~Yfg~-n~~RL~~iK~kyDP~nv 534 (554)
++.+.+...++++++++.+..+. .-+---+ ..+ . ....|-...+|+ .+.-+++||+.+||+|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~g------G~is~eH-G~G-------~--~k~~~~~~~~~~~~~~~~~~iK~~~DP~~i 242 (248)
T PF02913_consen 179 DPEEPERAEALWDELYELVLELG------GSISAEH-GIG-------K--LKKPYLEEEYGPAALRLMRAIKQAFDPNGI 242 (248)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT-------BBSSSS-GGG-------H--HHHHHHCHHCHHHHHHHHHHHHHHH-TTS-
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc------ccccccc-chh-------h--hhHHHHHHhcchHHHHHHHHhhhccCCccC
Confidence 34466667777777766665441 1111111 111 0 112233344554 79999999999999999
Q ss_pred CCC
Q 008779 535 FRN 537 (554)
Q Consensus 535 F~~ 537 (554)
++-
T Consensus 243 lNP 245 (248)
T PF02913_consen 243 LNP 245 (248)
T ss_dssp BST
T ss_pred CCC
Confidence 864
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=81.80 E-value=2.9 Score=51.49 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=55.8
Q ss_pred eEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCC-CccccCCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHHHH
Q 008779 92 QVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEG-LSYVSQVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQLY 169 (554)
Q Consensus 92 ~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~-~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~ 169 (554)
...+.|+|.+|+.++++.. . .-++..||+++.. ..........+||++++..+ .|..+.+.+++|+++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 4689999999999887642 2 4578899999732 21211122589999986554 444456789999999999999
Q ss_pred HHHH
Q 008779 170 YRIA 173 (554)
Q Consensus 170 ~~l~ 173 (554)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=77.96 E-value=6.7 Score=39.67 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=53.3
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCC-CccccCCCeEEEEecCCC-cE-EEcCCCCEEEEcCCCcHHH
Q 008779 91 PQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEG-LSYVSQVPFVVIDLINLS-KI-SVDAKQKTAWVQSGATLGQ 167 (554)
Q Consensus 91 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~-~~~~~~~~gvvIdl~~l~-~i-~vd~~~~~v~v~aG~~~~~ 167 (554)
+..+.+|.|.+|...+++ +.+ --++.+|||++.. .-.......-+||+.++. .. .+..+++.+++|+-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 557889999998877776 444 6789999999753 222222235788998874 22 3334567799999999999
Q ss_pred HH
Q 008779 168 LY 169 (554)
Q Consensus 168 l~ 169 (554)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 96
No 49
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=70.66 E-value=14 Score=33.13 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=32.7
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCcEEEEeC-CCCCCCCcc
Q 008779 93 VIITPLDVSQVQAAIKCSKKHGFQIRVRSG-GHDFEGLSY 131 (554)
Q Consensus 93 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~gg-Ghs~~~~~~ 131 (554)
+=+.|+..+.+...+.+++.+++||++... |+++.++..
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~ 47 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVS 47 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEe
Confidence 346799999999999999999999999885 888765443
No 50
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=64.67 E-value=15 Score=38.15 Aligned_cols=140 Identities=18% Similarity=0.158 Sum_probs=83.6
Q ss_pred CceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCcccc-CCCeEEEEecCCCcE-EEcCCCCEEEEcCCCcHHH
Q 008779 90 KPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVS-QVPFVVIDLINLSKI-SVDAKQKTAWVQSGATLGQ 167 (554)
Q Consensus 90 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~-~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~ 167 (554)
.-..++.|.+.+|...++.. .-..++..|++.+.-..... .+-..||-..++..+ +|+...+.+++|+|+++.|
T Consensus 202 ~~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~ 277 (493)
T COG4630 202 GDDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQ 277 (493)
T ss_pred CCceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHH
Confidence 34568899999999888743 45677888888854222111 111345555665554 5555678999999999999
Q ss_pred HHHHHHhhCCCcc--cC-CCC---CCcccchhhhcCCCCCCccccccccc--cceeEEEEEecCCeeec-cCCCCcchHH
Q 008779 168 LYYRIADKSKNLG--FP-GGV---CPTVGVGGHFSGGGYGIMLRKFGLAA--DNIVDAHLIDARGRLLD-RKSMGQDLFW 238 (554)
Q Consensus 168 l~~~l~~~g~~l~--~~-~g~---~~~vgigG~~~ggg~g~~~~~~G~~~--d~v~~~~vV~~~G~v~~-~~~~~~dl~~ 238 (554)
.+..|..+=.-|. ++ -|. -+.-+|||.++.|.- -|-+. =..++.++++-.|+-.+ .+- .|+|-
T Consensus 278 a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~RtlPL--e~~Fi 349 (493)
T COG4630 278 AYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRRTLPL--EDYFI 349 (493)
T ss_pred HHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCcccccH--HHHHH
Confidence 9999987521110 00 122 244567777755431 12221 13467788877666543 221 37777
Q ss_pred HHh
Q 008779 239 AIR 241 (554)
Q Consensus 239 a~r 241 (554)
+|+
T Consensus 350 ~Y~ 352 (493)
T COG4630 350 AYG 352 (493)
T ss_pred Hhh
Confidence 765
No 51
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=63.60 E-value=5.6 Score=42.65 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=23.2
Q ss_pred hhhhhhhh-ccHHHHHHhhhhcCCCCCCCC
Q 008779 509 IWGNKYFK-NNFKRLVHVKTMVDPHNFFRN 537 (554)
Q Consensus 509 ~yg~~Yfg-~n~~RL~~iK~kyDP~nvF~~ 537 (554)
.|-...|+ ..++-|++||+.+||+|+++.
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 34555555 479999999999999999874
No 52
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=61.53 E-value=12 Score=41.76 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=28.5
Q ss_pred hhhhhhhhh-ccHHHHHHhhhhcCCCCCCCCCCCCCc
Q 008779 508 SIWGNKYFK-NNFKRLVHVKTMVDPHNFFRNEQSIPP 543 (554)
Q Consensus 508 ~~yg~~Yfg-~n~~RL~~iK~kyDP~nvF~~~qsI~~ 543 (554)
..|-..+|| +.++-+++||+.+||+|+++--.=++|
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCc
Confidence 356667776 579999999999999999987665543
No 53
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=52.66 E-value=7.1 Score=41.52 Aligned_cols=24 Identities=29% Similarity=0.757 Sum_probs=21.1
Q ss_pred hhhhhccHHHHHHhhhhcCCCCCCCC
Q 008779 512 NKYFKNNFKRLVHVKTMVDPHNFFRN 537 (554)
Q Consensus 512 ~~Yfg~n~~RL~~iK~kyDP~nvF~~ 537 (554)
+.| .|+.+-.++|+++||+++|..
T Consensus 482 ~ky--~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 482 RKY--KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred Hhc--cChHHHHHHHHhcCccchhhh
Confidence 556 599999999999999999954
No 54
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=50.23 E-value=18 Score=39.82 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=26.0
Q ss_pred hhhhhhh-ccHHHHHHhhhhcCCCCCCCCCCCCC
Q 008779 510 WGNKYFK-NNFKRLVHVKTMVDPHNFFRNEQSIP 542 (554)
Q Consensus 510 yg~~Yfg-~n~~RL~~iK~kyDP~nvF~~~qsI~ 542 (554)
|-...|| +.++-+++||+.+||+|+++--.-++
T Consensus 440 ~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 440 QMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 3334555 67999999999999999998776654
No 55
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=49.98 E-value=33 Score=37.52 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=66.4
Q ss_pred hHHHHHccCCCCCCCccceeecCCCCChhhHhhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHc-CCcEEEE-
Q 008779 43 LFLDCLSMHPDNSSSISQVIYTKYSPSYSSVLSSSAQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKH-GFQIRVR- 120 (554)
Q Consensus 43 ~~~~cl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~-~~~v~v~- 120 (554)
.|++-..+++ .+|.+.++..+-++-+.+.. +...+ .....|-..+.|.|+|+|.++++.|+++ ..||.+.
T Consensus 112 rLv~kara~G---~~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~ 183 (717)
T COG4981 112 RLVQKARASG---APIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQW 183 (717)
T ss_pred HHHHHHHhcC---CCcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEE
Confidence 4555555553 35789999988888887643 22122 1245788999999999999999999998 4576654
Q ss_pred ----eCC-CCCCCCccccCCCeEEEEe-cCCCcEEEcCCCCEEEEcCCCcHH
Q 008779 121 ----SGG-HDFEGLSYVSQVPFVVIDL-INLSKISVDAKQKTAWVQSGATLG 166 (554)
Q Consensus 121 ----ggG-hs~~~~~~~~~~~gvvIdl-~~l~~i~vd~~~~~v~v~aG~~~~ 166 (554)
+|| |||..+.. +++-| +.+++. ++-++.+|+|.-..
T Consensus 184 egGraGGHHSweDld~------llL~tYs~lR~~----~NIvl~vGgGiGtp 225 (717)
T COG4981 184 EGGRAGGHHSWEDLDD------LLLATYSELRSR----DNIVLCVGGGIGTP 225 (717)
T ss_pred ecCccCCccchhhccc------HHHHHHHHHhcC----CCEEEEecCCcCCh
Confidence 234 45765431 22211 222221 23367788887554
No 56
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=42.97 E-value=15 Score=38.49 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.4
Q ss_pred hcc-HHHHHHhhhhcCCCCCCCC
Q 008779 516 KNN-FKRLVHVKTMVDPHNFFRN 537 (554)
Q Consensus 516 g~n-~~RL~~iK~kyDP~nvF~~ 537 (554)
..+ .+-.++||++|||.++|+.
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 6888999999999999964
No 57
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=35.73 E-value=1.7e+02 Score=31.32 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.8
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCC
Q 008779 89 PKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGG 123 (554)
Q Consensus 89 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggG 123 (554)
+....|+.|+..|-..++.+.++++|+++.-|+.|
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 35779999999999999999999999999999988
No 58
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.90 E-value=53 Score=30.75 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=31.7
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEE
Q 008779 82 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVR 120 (554)
Q Consensus 82 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ 120 (554)
||.. ...|..||..++++++.++.+.|+..+++..+.
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i 154 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHLI 154 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 5755 568999999999999999999999999875543
No 59
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=33.47 E-value=1.5e+02 Score=29.68 Aligned_cols=90 Identities=17% Similarity=0.073 Sum_probs=56.5
Q ss_pred ceeecCCCCChhhHhhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEE
Q 008779 60 QVIYTKYSPSYSSVLSSSAQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVV 139 (554)
Q Consensus 60 ~~~~~p~~~~~~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvv 139 (554)
..++|||-+..+.+.. . ...++++|++++-+...+.|.+-.+.=|||... ...+ ++
T Consensus 133 a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~D---~l 188 (263)
T COG0351 133 ATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAVD---VL 188 (263)
T ss_pred CeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Ccee---EE
Confidence 4688988777666421 1 267899999999999999999988888899865 1111 33
Q ss_pred EEecCCC---cEEEcCCCCEEEEcCCCcHHHHHHHHHhhC
Q 008779 140 IDLINLS---KISVDAKQKTAWVQSGATLGQLYYRIADKS 176 (554)
Q Consensus 140 Idl~~l~---~i~vd~~~~~v~v~aG~~~~~l~~~l~~~g 176 (554)
.|-..+. .-.++.. =+=|.||++.-.+..-..+|
T Consensus 189 ~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 189 YDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 3322111 1122211 24589999986654443444
No 60
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=32.87 E-value=58 Score=33.44 Aligned_cols=58 Identities=21% Similarity=0.356 Sum_probs=38.3
Q ss_pred ceeecCCCCChhhHhhhcccccccCCCCCCCceEEEecCC------HHHHHHHHHHHHHcC------CcEEEEeCCC
Q 008779 60 QVIYTKYSPSYSSVLSSSAQNLRFSTPNTPKPQVIITPLD------VSQVQAAIKCSKKHG------FQIRVRSGGH 124 (554)
Q Consensus 60 ~~~~~p~~~~~~~~~~~~~~n~r~~~~~~~~p~~vv~P~s------~~dv~~~v~~a~~~~------~~v~v~ggGh 124 (554)
+.|..|+...|.+.+.. -+.||. ....+++|.. +++|.++++.+.+.+ +=|.+||||.
T Consensus 18 ~vITs~~gAa~~D~~~~--~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRT--LKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHH--HHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 34445566667777652 234653 4567777765 689999999998754 4466677665
No 61
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.13 E-value=24 Score=29.49 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=7.1
Q ss_pred CCCCCCChHHHHHHHHH
Q 008779 1 MKSPCSSVIPLVFLLLL 17 (554)
Q Consensus 1 ~~~~~~~~~~~~~~~l~ 17 (554)
|.|-.+.|+.++|++||
T Consensus 1 MaSK~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALL 17 (95)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 55544444433333333
No 62
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=31.12 E-value=2.8e+02 Score=31.01 Aligned_cols=127 Identities=14% Similarity=0.236 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCCCCccccCCCeEEEEecCCCc-E-----EEcCCC---CEEEEcCCCc----HH
Q 008779 100 VSQVQAAIKCSKKHGFQIRVRSGGHDFEGLSYVSQVPFVVIDLINLSK-I-----SVDAKQ---KTAWVQSGAT----LG 166 (554)
Q Consensus 100 ~~dv~~~v~~a~~~~~~v~v~ggGhs~~~~~~~~~~~gvvIdl~~l~~-i-----~vd~~~---~~v~v~aG~~----~~ 166 (554)
.++|.+.+..+-+++-++.....-.+...+..+.+ |+||-+ |-. | -.++++ .+.-|=|--. ..
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD---VIIDAS-MPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vYq 387 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD---VIVDAS-MPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVYQ 387 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC---eEEecC-cHHHHhccCCccCCCCCcccceeecCCccchHHHH
Confidence 47799999999999999999998888877777776 888854 211 1 123322 2333333322 45
Q ss_pred HHHHHHHhhCCCcccCC---CCCCcccchhhhcCCCCCCccccccccccce-----eEEEEEecCCeeec-cCCCCcchH
Q 008779 167 QLYYRIADKSKNLGFPG---GVCPTVGVGGHFSGGGYGIMLRKFGLAADNI-----VDAHLIDARGRLLD-RKSMGQDLF 237 (554)
Q Consensus 167 ~l~~~l~~~g~~l~~~~---g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v-----~~~~vV~~~G~v~~-~~~~~~dl~ 237 (554)
++++.+.++| +|.+ |+.+.||+ ++ .-.--||..--.. =.++||+.+|+++- -..+..|+|
T Consensus 388 ~~I~~ck~nG---afDp~TmGsV~NVGL---MA-----qKAEEYGSHdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~GDIw 456 (741)
T TIGR00178 388 VVIEDCKQNG---AFDPTTMGTVPNVGL---MA-----QKAEEYGSHDKTFQIPADGVVRVVDSSGEVLLEQSVEAGDIW 456 (741)
T ss_pred HHHHHHHhcC---CCCcccccCCcchhH---hH-----HHHHHhcCCCcceecCCCceEEEEeCCCCEEEEeeccCCcch
Confidence 6677888887 3443 55555554 21 1123344321111 12788999999884 233456888
Q ss_pred HHHh
Q 008779 238 WAIR 241 (554)
Q Consensus 238 ~a~r 241 (554)
.++.
T Consensus 457 Rmcq 460 (741)
T TIGR00178 457 RMCQ 460 (741)
T ss_pred hhhh
Confidence 8766
No 63
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=25.05 E-value=73 Score=34.39 Aligned_cols=57 Identities=30% Similarity=0.393 Sum_probs=38.1
Q ss_pred ceeecCCCCChhhHhhhcccccccCCCCCCCceEEEecCCH------HHHHHHHHHHHHc--CCcEEEEeCC
Q 008779 60 QVIYTKYSPSYSSVLSSSAQNLRFSTPNTPKPQVIITPLDV------SQVQAAIKCSKKH--GFQIRVRSGG 123 (554)
Q Consensus 60 ~~~~~p~~~~~~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~------~dv~~~v~~a~~~--~~~v~v~ggG 123 (554)
+.|..|....+.+.+. .-+.||+ .-..+++|..+ .+|.++++.+.+. .+=|.+||||
T Consensus 139 ~viTs~~gAa~~D~~~--~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 139 GVITSPTGAAIRDILT--VLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEEeCCccHHHHHHHH--HHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 3444556666777765 2356664 34577787766 8899999888874 4556677777
No 64
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=24.05 E-value=1.2e+02 Score=26.30 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=32.7
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcE-EEEeCCCC
Q 008779 83 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQI-RVRSGGHD 125 (554)
Q Consensus 83 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v-~v~ggGhs 125 (554)
|.. ...+..|+.+.|++|+.++.+.|++.|++. .++-.|+.
T Consensus 42 W~~--~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 42 WLN--EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred HHH--CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 643 458999999999999999999999999884 44445554
No 65
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.70 E-value=87 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCC
Q 008779 103 VQAAIKCSKKHGFQIRVRSGGHDFEG 128 (554)
Q Consensus 103 v~~~v~~a~~~~~~v~v~ggGhs~~~ 128 (554)
..+.+++++++++|+.|.++|..+-.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHH
Confidence 34568899999999999999999643
No 66
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=23.10 E-value=1.3e+02 Score=27.31 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=26.3
Q ss_pred eEEEecCCHHHHHHHHHHHHHcCCcEEEEe
Q 008779 92 QVIITPLDVSQVQAAIKCSKKHGFQIRVRS 121 (554)
Q Consensus 92 ~~vv~P~s~~dv~~~v~~a~~~~~~v~v~g 121 (554)
..|+.|.+.+|+..+++.|-+..-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 358999999999999999998888888873
No 67
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.41 E-value=1.3e+02 Score=25.67 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=28.1
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 008779 93 VIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDF 126 (554)
Q Consensus 93 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~ 126 (554)
.+-.+....|+.++++.|+++|+|+......++-
T Consensus 53 ~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 53 AISNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3445567799999999999999999999987653
No 68
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=21.83 E-value=1.9e+02 Score=25.20 Aligned_cols=31 Identities=6% Similarity=0.100 Sum_probs=28.7
Q ss_pred CceEEEecCCHHHHHHHHHHHHHcCCcEEEE
Q 008779 90 KPQVIITPLDVSQVQAAIKCSKKHGFQIRVR 120 (554)
Q Consensus 90 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ 120 (554)
....|+...+++|+.++-+.|++.|++..++
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 7999999999999999999999999987764
No 69
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.51 E-value=1.3e+02 Score=30.11 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=42.2
Q ss_pred CccceeecCCCCChhhHhhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 008779 57 SISQVIYTKYSPSYSSVLSSSAQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGFQIRVRSGGHDFE 127 (554)
Q Consensus 57 ~~~~~~~~p~~~~~~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGhs~~ 127 (554)
-|.+.+...|..-..+.+.... ...-...+.|.++++|+++|+.|.++ .-+.+.+||=+-.
T Consensus 13 lL~G~ivdtNa~~la~~L~~~G---------~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGPT 73 (255)
T COG1058 13 LLSGRIVDTNAAFLADELTELG---------VDLARITTVGDNPDRIVEALREASER-ADVVITTGGLGPT 73 (255)
T ss_pred eecCceecchHHHHHHHHHhcC---------ceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCCC
Confidence 4556666544333344333222 33455789999999999999999999 8899999887643
Done!