Query 008780
Match_columns 554
No_of_seqs 517 out of 4256
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 16:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 2.5E-65 5.5E-70 499.8 39.8 354 161-550 1-358 (397)
2 KOG0543 FKBP-type peptidyl-pro 100.0 9.7E-35 2.1E-39 284.9 27.0 351 37-512 1-357 (397)
3 KOG0545 Aryl-hydrocarbon recep 100.0 6.4E-35 1.4E-39 265.2 18.6 276 265-547 8-329 (329)
4 KOG0549 FKBP-type peptidyl-pro 100.0 8.7E-29 1.9E-33 215.9 16.1 171 81-259 1-177 (188)
5 KOG0549 FKBP-type peptidyl-pro 100.0 1.2E-28 2.5E-33 215.1 16.1 175 200-383 1-178 (188)
6 KOG0544 FKBP-type peptidyl-pro 99.9 1.8E-27 3.9E-32 182.3 11.7 106 30-143 2-107 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 1.1E-26 2.3E-31 207.9 12.3 114 19-143 91-204 (205)
8 KOG0544 FKBP-type peptidyl-pro 99.9 5.1E-26 1.1E-30 174.4 11.2 107 268-381 2-108 (108)
9 COG0545 FkpA FKBP-type peptidy 99.9 8.4E-23 1.8E-27 183.0 12.1 104 151-257 99-204 (205)
10 PRK11570 peptidyl-prolyl cis-t 99.9 1.9E-22 4.1E-27 188.0 13.9 112 21-143 94-205 (206)
11 KOG0552 FKBP-type peptidyl-pro 99.9 1.4E-22 3.1E-27 186.5 12.7 117 16-143 107-225 (226)
12 TIGR03516 ppisom_GldI peptidyl 99.9 3E-21 6.5E-26 175.5 13.7 111 24-144 64-176 (177)
13 PRK10902 FKBP-type peptidyl-pr 99.8 4.3E-20 9.3E-25 178.4 14.2 114 21-146 138-251 (269)
14 KOG0552 FKBP-type peptidyl-pro 99.8 1.7E-19 3.6E-24 166.3 11.9 106 151-257 118-225 (226)
15 KOG0553 TPR repeat-containing 99.8 2.7E-19 5.7E-24 169.7 13.5 122 393-530 76-197 (304)
16 TIGR03516 ppisom_GldI peptidyl 99.8 4.1E-19 8.9E-24 161.5 13.5 107 151-258 67-176 (177)
17 PF00254 FKBP_C: FKBP-type pep 99.8 1.8E-18 3.9E-23 142.4 12.3 94 41-141 1-94 (94)
18 PRK11570 peptidyl-prolyl cis-t 99.8 2.1E-18 4.6E-23 160.8 13.8 105 150-257 99-205 (206)
19 KOG4234 TPR repeat-containing 99.8 9.3E-18 2E-22 149.2 15.9 128 392-530 89-216 (271)
20 PF00254 FKBP_C: FKBP-type pep 99.7 2.7E-17 5.8E-22 135.4 12.2 91 165-255 1-94 (94)
21 PRK10902 FKBP-type peptidyl-pr 99.7 5.9E-17 1.3E-21 156.7 14.0 105 151-258 144-249 (269)
22 KOG0548 Molecular co-chaperone 99.6 3.4E-15 7.3E-20 151.3 13.2 118 397-530 357-474 (539)
23 KOG0547 Translocase of outer m 99.6 5.9E-15 1.3E-19 147.4 14.1 108 388-510 105-212 (606)
24 PRK15095 FKBP-type peptidyl-pr 99.6 1.2E-14 2.5E-19 129.9 13.9 83 45-143 5-87 (156)
25 KOG4648 Uncharacterized conser 99.6 3E-15 6.5E-20 143.3 10.0 121 391-527 90-210 (536)
26 KOG0546 HSP90 co-chaperone CPR 99.6 5.3E-15 1.1E-19 143.1 10.4 242 291-546 110-372 (372)
27 PLN03088 SGT1, suppressor of 99.5 1.3E-13 2.8E-18 141.4 16.2 117 398-530 2-118 (356)
28 KOG0550 Molecular chaperone (D 99.5 4.7E-14 1E-18 138.6 11.6 127 391-530 242-368 (486)
29 TIGR00990 3a0801s09 mitochondr 99.5 6.5E-13 1.4E-17 147.0 18.8 135 364-515 94-228 (615)
30 PRK10737 FKBP-type peptidyl-pr 99.5 4E-13 8.7E-18 123.0 13.9 82 45-143 3-84 (196)
31 PRK15359 type III secretion sy 99.5 8.5E-13 1.8E-17 117.5 15.4 109 401-525 27-135 (144)
32 KOG0551 Hsp90 co-chaperone CNS 99.5 3.9E-13 8.4E-18 128.8 13.7 104 397-511 80-183 (390)
33 COG1047 SlpA FKBP-type peptidy 99.5 1.1E-12 2.3E-17 116.2 14.5 83 45-143 3-85 (174)
34 PRK15095 FKBP-type peptidyl-pr 99.5 4.3E-13 9.4E-18 119.8 11.9 72 168-239 4-76 (156)
35 KOG0548 Molecular co-chaperone 99.5 4.1E-13 8.8E-18 136.4 11.7 113 398-526 2-114 (539)
36 PRK10737 FKBP-type peptidyl-pr 99.4 1.4E-12 3E-17 119.5 11.7 72 169-240 3-74 (196)
37 COG1047 SlpA FKBP-type peptidy 99.4 2.6E-12 5.7E-17 113.8 11.5 74 168-241 2-76 (174)
38 KOG4642 Chaperone-dependent E3 99.4 1.7E-12 3.7E-17 119.1 10.3 119 396-529 8-130 (284)
39 PRK15363 pathogenicity island 99.4 2.7E-11 5.9E-16 106.4 15.4 102 396-512 33-134 (157)
40 TIGR02552 LcrH_SycD type III s 99.3 2.7E-11 5.8E-16 106.6 15.1 115 397-527 16-130 (135)
41 KOG4626 O-linked N-acetylgluco 99.3 1.2E-11 2.6E-16 126.9 9.9 124 398-526 252-398 (966)
42 PRK11189 lipoprotein NlpI; Pro 99.3 1.9E-10 4E-15 115.4 17.1 104 396-514 62-165 (296)
43 KOG0376 Serine-threonine phosp 99.2 1.1E-11 2.3E-16 125.2 7.5 118 397-530 3-120 (476)
44 PRK10370 formate-dependent nit 99.2 1.3E-10 2.7E-15 109.2 14.0 114 397-526 72-188 (198)
45 KOG4626 O-linked N-acetylgluco 99.2 1.2E-10 2.6E-15 119.8 12.1 133 399-549 321-453 (966)
46 PF13414 TPR_11: TPR repeat; P 99.2 8.7E-11 1.9E-15 90.4 7.9 66 447-512 3-69 (69)
47 TIGR00990 3a0801s09 mitochondr 99.2 5.4E-10 1.2E-14 123.9 17.1 103 397-514 330-432 (615)
48 KOG0624 dsRNA-activated protei 99.2 2.4E-10 5.2E-15 110.1 11.1 152 390-553 261-428 (504)
49 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.9E-09 4.2E-14 92.1 13.5 110 399-521 3-115 (119)
50 PRK02603 photosystem I assembl 99.1 3.8E-09 8.3E-14 97.1 15.0 110 393-514 30-153 (172)
51 KOG0624 dsRNA-activated protei 99.0 2.6E-09 5.6E-14 103.1 13.0 115 396-526 36-150 (504)
52 PRK09782 bacteriophage N4 rece 99.0 6E-09 1.3E-13 119.1 17.9 128 399-544 610-737 (987)
53 PRK10370 formate-dependent nit 99.0 6.9E-09 1.5E-13 97.4 14.6 122 410-549 51-175 (198)
54 PRK15179 Vi polysaccharide bio 99.0 5E-09 1.1E-13 115.3 15.8 134 396-547 84-217 (694)
55 PF12895 Apc3: Anaphase-promot 99.0 1.1E-09 2.4E-14 87.8 7.7 83 411-507 2-84 (84)
56 PRK15359 type III secretion sy 99.0 3.3E-09 7.2E-14 94.4 11.4 113 418-551 13-125 (144)
57 CHL00033 ycf3 photosystem I as 99.0 1.3E-08 2.9E-13 93.1 15.7 114 395-520 32-159 (168)
58 KOG1126 DNA-binding cell divis 99.0 1.1E-09 2.3E-14 114.4 9.2 113 398-514 421-556 (638)
59 PRK12370 invasion protein regu 99.0 8.1E-09 1.8E-13 112.7 16.3 90 410-514 316-405 (553)
60 KOG1155 Anaphase-promoting com 99.0 1.2E-08 2.6E-13 102.3 15.7 132 397-546 363-494 (559)
61 KOG0547 Translocase of outer m 99.0 6.7E-09 1.5E-13 104.6 13.8 105 395-514 323-427 (606)
62 KOG1155 Anaphase-promoting com 99.0 7.1E-09 1.5E-13 103.9 13.3 125 403-545 335-459 (559)
63 cd00189 TPR Tetratricopeptide 99.0 7.3E-09 1.6E-13 83.2 11.3 99 400-513 2-100 (100)
64 PRK15331 chaperone protein Sic 99.0 1.5E-08 3.3E-13 89.5 13.9 102 397-514 36-137 (165)
65 PRK12370 invasion protein regu 99.0 1.2E-08 2.7E-13 111.3 16.0 119 414-550 354-473 (553)
66 PF13414 TPR_11: TPR repeat; P 98.9 1.9E-09 4.2E-14 82.8 6.5 67 397-478 2-69 (69)
67 PF13432 TPR_16: Tetratricopep 98.9 3.8E-09 8.3E-14 80.1 7.6 64 451-514 1-64 (65)
68 KOG1308 Hsp70-interacting prot 98.9 1.2E-09 2.6E-14 105.8 5.8 120 390-526 106-225 (377)
69 PRK09782 bacteriophage N4 rece 98.9 2.3E-08 5.1E-13 114.3 17.1 123 410-551 588-710 (987)
70 TIGR02521 type_IV_pilW type IV 98.9 5.6E-08 1.2E-12 92.6 16.7 124 398-526 31-179 (234)
71 TIGR02521 type_IV_pilW type IV 98.9 8.5E-08 1.9E-12 91.4 17.5 117 400-530 101-217 (234)
72 TIGR02552 LcrH_SycD type III s 98.9 2.1E-08 4.6E-13 88.0 12.1 115 419-551 4-118 (135)
73 TIGR03302 OM_YfiO outer membra 98.9 7.6E-08 1.6E-12 93.2 17.0 113 397-522 32-155 (235)
74 PRK15174 Vi polysaccharide exp 98.9 3.3E-08 7.1E-13 109.9 16.3 96 404-514 218-317 (656)
75 PRK15174 Vi polysaccharide exp 98.9 3.8E-08 8.1E-13 109.5 16.1 135 398-550 246-384 (656)
76 COG3063 PilF Tfp pilus assembl 98.9 6E-08 1.3E-12 89.5 14.3 116 395-514 32-172 (250)
77 PRK11189 lipoprotein NlpI; Pro 98.9 4.4E-08 9.5E-13 98.3 14.8 124 412-549 40-163 (296)
78 KOG1173 Anaphase-promoting com 98.8 2.7E-08 5.8E-13 102.1 12.2 120 400-528 416-535 (611)
79 COG3063 PilF Tfp pilus assembl 98.8 7.3E-08 1.6E-12 88.9 13.6 140 397-549 102-241 (250)
80 KOG1125 TPR repeat-containing 98.8 8.7E-09 1.9E-13 106.1 8.1 99 400-513 432-530 (579)
81 PRK10803 tol-pal system protei 98.8 1.7E-07 3.8E-12 91.5 15.5 114 399-525 143-260 (263)
82 KOG4555 TPR repeat-containing 98.8 1.8E-07 3.9E-12 78.4 12.9 116 392-525 37-156 (175)
83 PF13512 TPR_18: Tetratricopep 98.8 1.6E-07 3.4E-12 81.4 13.0 105 398-514 10-132 (142)
84 KOG1126 DNA-binding cell divis 98.8 9.2E-08 2E-12 100.2 13.4 125 396-536 487-611 (638)
85 PF13429 TPR_15: Tetratricopep 98.8 4.1E-08 8.9E-13 97.8 10.5 132 397-546 145-276 (280)
86 PRK11788 tetratricopeptide rep 98.7 2.3E-07 4.9E-12 96.9 16.2 104 401-514 144-247 (389)
87 PRK11447 cellulose synthase su 98.7 2E-07 4.2E-12 110.6 17.3 131 401-549 354-526 (1157)
88 PRK15179 Vi polysaccharide bio 98.7 2.1E-07 4.6E-12 102.6 16.1 117 395-526 117-233 (694)
89 COG4785 NlpI Lipoprotein NlpI, 98.7 2.3E-08 4.9E-13 91.0 6.9 132 365-514 35-166 (297)
90 PF13371 TPR_9: Tetratricopept 98.7 6.5E-08 1.4E-12 75.1 8.6 68 454-522 2-69 (73)
91 PLN02789 farnesyltranstransfer 98.7 3.5E-07 7.7E-12 92.0 16.2 113 397-525 70-185 (320)
92 PRK11447 cellulose synthase su 98.7 1.8E-07 3.9E-12 111.0 16.2 74 452-526 356-429 (1157)
93 PRK11788 tetratricopeptide rep 98.7 3.3E-07 7.2E-12 95.6 16.5 100 400-514 182-282 (389)
94 COG5010 TadD Flp pilus assembl 98.7 3.4E-07 7.4E-12 86.2 14.5 116 398-529 100-215 (257)
95 KOG0553 TPR repeat-containing 98.7 9.6E-08 2.1E-12 91.6 10.6 99 449-550 83-181 (304)
96 PRK10049 pgaA outer membrane p 98.7 2.8E-07 6.1E-12 104.6 16.4 112 398-526 49-160 (765)
97 PLN02789 farnesyltranstransfer 98.7 3.3E-07 7.1E-12 92.3 15.1 126 408-551 47-175 (320)
98 TIGR00115 tig trigger factor. 98.7 4E-08 8.7E-13 103.1 8.6 96 45-156 147-242 (408)
99 KOG2076 RNA polymerase III tra 98.7 5.9E-07 1.3E-11 97.0 16.7 103 397-514 138-240 (895)
100 TIGR02917 PEP_TPR_lipo putativ 98.7 4.6E-07 1E-11 104.3 17.1 114 396-525 123-236 (899)
101 TIGR03302 OM_YfiO outer membra 98.7 5.9E-07 1.3E-11 86.9 15.1 137 399-549 71-234 (235)
102 PRK15363 pathogenicity island 98.7 2.5E-07 5.4E-12 81.6 11.0 97 447-546 35-131 (157)
103 TIGR02917 PEP_TPR_lipo putativ 98.6 4.4E-07 9.6E-12 104.5 16.4 126 401-545 773-898 (899)
104 PF13432 TPR_16: Tetratricopep 98.6 9.4E-08 2E-12 72.4 6.9 64 403-481 2-65 (65)
105 PF14559 TPR_19: Tetratricopep 98.6 9.3E-08 2E-12 73.0 6.9 67 457-524 1-67 (68)
106 PRK10866 outer membrane biogen 98.6 2.2E-06 4.7E-11 83.1 17.7 121 398-530 32-175 (243)
107 cd00189 TPR Tetratricopeptide 98.6 9.8E-07 2.1E-11 70.5 12.3 98 449-549 2-99 (100)
108 PRK01490 tig trigger factor; P 98.6 1.2E-07 2.6E-12 100.4 8.6 90 45-150 158-247 (435)
109 PF06552 TOM20_plant: Plant sp 98.6 9.1E-07 2E-11 79.0 12.2 99 414-528 7-126 (186)
110 KOG4162 Predicted calmodulin-b 98.6 4.7E-07 1E-11 96.3 11.8 103 398-515 684-788 (799)
111 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.7E-07 5.9E-12 94.2 9.8 65 447-511 75-142 (453)
112 COG0544 Tig FKBP-type peptidyl 98.6 1.3E-07 2.8E-12 98.4 7.4 93 45-153 158-250 (441)
113 KOG1129 TPR repeat-containing 98.5 3.2E-07 6.9E-12 88.4 9.3 104 447-553 358-464 (478)
114 CHL00033 ycf3 photosystem I as 98.5 1E-06 2.2E-11 80.6 12.5 110 404-527 5-117 (168)
115 KOG0550 Molecular chaperone (D 98.5 1E-06 2.2E-11 87.6 12.9 121 397-524 202-327 (486)
116 PF13525 YfiO: Outer membrane 98.5 2.5E-06 5.4E-11 80.6 15.3 122 397-530 4-141 (203)
117 PLN03088 SGT1, suppressor of 98.5 8.1E-07 1.7E-11 91.3 12.6 97 450-549 5-101 (356)
118 KOG1840 Kinesin light chain [C 98.5 1.2E-06 2.6E-11 92.4 14.0 146 394-548 237-397 (508)
119 COG4235 Cytochrome c biogenesi 98.5 1.7E-06 3.7E-11 83.6 13.6 107 394-515 152-261 (287)
120 KOG2003 TPR repeat-containing 98.5 5.9E-07 1.3E-11 89.8 10.5 117 398-530 490-606 (840)
121 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.6E-06 3.4E-11 73.8 11.8 101 448-550 3-108 (119)
122 PF14559 TPR_19: Tetratricopep 98.5 4.4E-07 9.5E-12 69.3 7.2 67 408-489 1-67 (68)
123 PF12688 TPR_5: Tetratrico pep 98.5 3.1E-06 6.7E-11 72.1 12.8 98 400-509 3-103 (120)
124 KOG1310 WD40 repeat protein [G 98.5 4.7E-07 1E-11 92.2 8.7 123 391-529 367-492 (758)
125 PRK10049 pgaA outer membrane p 98.5 2.9E-06 6.3E-11 96.4 15.9 102 398-514 359-460 (765)
126 PF13424 TPR_12: Tetratricopep 98.4 4.5E-07 9.8E-12 71.3 6.5 65 446-510 4-75 (78)
127 PF09976 TPR_21: Tetratricopep 98.4 2.4E-06 5.2E-11 76.1 11.6 97 398-506 11-110 (145)
128 COG1729 Uncharacterized protei 98.4 3.8E-06 8.1E-11 80.3 13.1 106 398-515 141-249 (262)
129 PRK14574 hmsH outer membrane p 98.4 4.2E-06 9.2E-11 94.2 15.8 147 397-551 33-202 (822)
130 TIGR00115 tig trigger factor. 98.4 1.6E-06 3.5E-11 91.1 10.7 85 168-258 146-230 (408)
131 PF13424 TPR_12: Tetratricopep 98.4 2E-06 4.3E-11 67.6 8.4 73 396-476 3-75 (78)
132 PRK02603 photosystem I assembl 98.4 3.9E-06 8.5E-11 77.1 11.3 78 447-525 35-115 (172)
133 PF13371 TPR_9: Tetratricopept 98.3 2.4E-06 5.2E-11 66.2 8.3 70 405-489 2-71 (73)
134 KOG2002 TPR-containing nuclear 98.3 5.9E-06 1.3E-10 90.2 13.8 144 398-547 452-597 (1018)
135 COG4783 Putative Zn-dependent 98.3 1.5E-05 3.2E-10 81.4 15.3 117 398-530 306-422 (484)
136 PF12968 DUF3856: Domain of Un 98.3 4.2E-05 9.2E-10 63.1 14.7 110 398-510 9-129 (144)
137 KOG2002 TPR-containing nuclear 98.3 1.3E-05 2.8E-10 87.5 15.3 137 398-547 270-409 (1018)
138 PF13429 TPR_15: Tetratricopep 98.3 3.6E-06 7.9E-11 83.8 10.5 134 399-550 111-246 (280)
139 KOG1840 Kinesin light chain [C 98.3 1.7E-05 3.8E-10 83.8 15.3 126 398-530 199-336 (508)
140 KOG2076 RNA polymerase III tra 98.3 3.2E-05 6.9E-10 84.0 17.2 137 398-551 173-313 (895)
141 KOG1125 TPR repeat-containing 98.3 1.5E-05 3.2E-10 82.7 13.8 176 329-546 285-526 (579)
142 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.7E-05 3.6E-10 81.3 13.5 73 393-477 70-142 (453)
143 COG5010 TadD Flp pilus assembl 98.2 2.2E-05 4.8E-10 74.2 13.4 102 404-520 72-173 (257)
144 PRK01490 tig trigger factor; P 98.2 6.5E-06 1.4E-10 87.2 10.9 85 168-258 157-241 (435)
145 COG0544 Tig FKBP-type peptidyl 98.2 3.5E-06 7.5E-11 87.9 8.5 82 169-258 158-241 (441)
146 PRK14574 hmsH outer membrane p 98.2 1.6E-05 3.5E-10 89.5 14.4 125 405-546 109-234 (822)
147 cd05804 StaR_like StaR_like; a 98.2 3.1E-05 6.7E-10 79.7 15.6 113 398-514 43-181 (355)
148 KOG1128 Uncharacterized conser 98.2 7.1E-06 1.5E-10 87.1 10.6 102 398-514 485-586 (777)
149 PF09976 TPR_21: Tetratricopep 98.2 0.00013 2.8E-09 64.9 16.6 98 398-508 48-145 (145)
150 KOG1173 Anaphase-promoting com 98.2 1.6E-05 3.4E-10 82.3 11.8 102 447-551 414-522 (611)
151 COG2956 Predicted N-acetylgluc 98.2 4.7E-05 1E-09 73.8 14.2 139 388-530 100-263 (389)
152 COG4783 Putative Zn-dependent 98.2 3.6E-05 7.8E-10 78.7 13.9 113 401-529 343-455 (484)
153 PRK10803 tol-pal system protei 98.2 2.7E-05 5.9E-10 76.1 12.8 102 448-551 143-250 (263)
154 KOG3060 Uncharacterized conser 98.1 0.00011 2.4E-09 69.0 15.3 110 401-514 89-224 (289)
155 PF03704 BTAD: Bacterial trans 98.1 0.00016 3.5E-09 64.2 16.1 112 398-509 6-124 (146)
156 PRK11906 transcriptional regul 98.1 4.2E-05 9.2E-10 78.5 13.4 104 402-521 259-377 (458)
157 PRK10153 DNA-binding transcrip 98.1 7.6E-05 1.7E-09 80.2 15.7 113 398-515 339-487 (517)
158 cd05804 StaR_like StaR_like; a 98.1 4.2E-05 9E-10 78.8 12.7 100 398-512 114-217 (355)
159 PF00515 TPR_1: Tetratricopept 98.0 8.2E-06 1.8E-10 52.8 4.3 33 481-513 1-33 (34)
160 KOG1174 Anaphase-promoting com 98.0 0.00015 3.3E-09 72.4 15.0 135 397-550 333-503 (564)
161 TIGR00540 hemY_coli hemY prote 98.0 0.00034 7.3E-09 73.7 18.8 106 394-514 80-186 (409)
162 COG2956 Predicted N-acetylgluc 98.0 0.00013 2.8E-09 70.9 13.9 120 394-530 176-296 (389)
163 PRK14720 transcript cleavage f 98.0 9.4E-05 2E-09 82.9 14.8 101 397-514 30-149 (906)
164 COG4700 Uncharacterized protei 98.0 0.00033 7.1E-09 62.9 15.1 111 398-524 89-201 (251)
165 PF15015 NYD-SP12_N: Spermatog 98.0 4.3E-05 9.2E-10 76.3 10.6 115 395-510 173-291 (569)
166 TIGR00540 hemY_coli hemY prote 98.0 8.6E-05 1.9E-09 78.1 13.1 133 397-546 262-398 (409)
167 PRK10747 putative protoheme IX 98.0 0.00048 1E-08 72.2 18.4 120 393-529 79-200 (398)
168 KOG0545 Aryl-hydrocarbon recep 98.0 2.5E-06 5.4E-11 79.3 1.0 83 24-110 5-90 (329)
169 PF07719 TPR_2: Tetratricopept 97.9 2.3E-05 5E-10 50.5 5.0 34 481-514 1-34 (34)
170 KOG1156 N-terminal acetyltrans 97.9 0.00012 2.6E-09 77.0 12.6 115 400-530 9-123 (700)
171 PF13431 TPR_17: Tetratricopep 97.9 1.1E-05 2.3E-10 52.2 3.1 34 469-502 1-34 (34)
172 KOG1129 TPR repeat-containing 97.9 0.00011 2.3E-09 71.4 11.1 97 402-514 227-323 (478)
173 PRK11906 transcriptional regul 97.9 9E-05 2E-09 76.1 11.2 89 411-514 317-405 (458)
174 PF12895 Apc3: Anaphase-promot 97.9 2.6E-05 5.6E-10 62.2 5.9 80 460-543 2-83 (84)
175 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 9.1E-05 2E-09 76.3 11.2 93 403-510 205-297 (395)
176 PF14938 SNAP: Soluble NSF att 97.9 0.00011 2.5E-09 73.1 11.6 110 396-514 112-229 (282)
177 PF14938 SNAP: Soluble NSF att 97.8 0.0001 2.3E-09 73.3 10.6 106 395-510 32-144 (282)
178 PRK10747 putative protoheme IX 97.8 0.00026 5.6E-09 74.2 14.0 128 397-546 262-389 (398)
179 COG4235 Cytochrome c biogenesi 97.8 0.0005 1.1E-08 66.8 14.3 118 414-549 138-258 (287)
180 PF00515 TPR_1: Tetratricopept 97.8 3.5E-05 7.5E-10 49.8 4.2 33 448-480 2-34 (34)
181 KOG4151 Myosin assembly protei 97.8 7.8E-05 1.7E-09 80.4 9.2 114 390-514 45-160 (748)
182 KOG1128 Uncharacterized conser 97.8 0.0001 2.3E-09 78.5 9.6 95 447-544 485-579 (777)
183 KOG4162 Predicted calmodulin-b 97.7 0.00044 9.6E-09 74.2 13.8 127 401-545 653-781 (799)
184 COG4105 ComL DNA uptake lipopr 97.7 0.0018 3.9E-08 61.6 16.5 106 398-515 34-150 (254)
185 PF12688 TPR_5: Tetratrico pep 97.7 0.00031 6.7E-09 59.9 10.2 66 448-513 2-70 (120)
186 COG1729 Uncharacterized protei 97.7 0.00033 7.2E-09 67.2 11.1 99 450-551 144-248 (262)
187 PF13428 TPR_14: Tetratricopep 97.7 9.4E-05 2E-09 51.0 5.5 32 483-514 3-34 (44)
188 PF13428 TPR_14: Tetratricopep 97.7 9.9E-05 2.1E-09 50.9 5.4 43 448-490 2-44 (44)
189 KOG4234 TPR repeat-containing 97.7 0.0007 1.5E-08 61.5 12.2 95 453-550 101-200 (271)
190 PRK10153 DNA-binding transcrip 97.7 0.00028 6.1E-09 75.8 11.6 36 447-482 453-488 (517)
191 KOG4648 Uncharacterized conser 97.6 0.00015 3.3E-09 70.7 7.4 63 450-512 100-162 (536)
192 PF12569 NARP1: NMDA receptor- 97.6 0.00074 1.6E-08 72.3 13.1 74 446-520 193-266 (517)
193 PRK10866 outer membrane biogen 97.6 0.00098 2.1E-08 64.7 12.8 70 447-516 32-104 (243)
194 KOG2003 TPR repeat-containing 97.6 0.0013 2.7E-08 66.5 13.4 75 452-527 631-705 (840)
195 PRK14720 transcript cleavage f 97.6 0.00086 1.9E-08 75.4 13.5 112 399-527 117-268 (906)
196 PF13525 YfiO: Outer membrane 97.6 0.0016 3.5E-08 61.4 13.6 69 447-515 5-76 (203)
197 KOG0495 HAT repeat protein [RN 97.6 0.0011 2.3E-08 70.0 13.2 125 401-530 587-733 (913)
198 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00046 9.9E-09 49.3 7.4 47 482-529 2-48 (53)
199 PRK15331 chaperone protein Sic 97.6 0.0011 2.3E-08 59.0 11.4 68 447-514 37-104 (165)
200 PF07719 TPR_2: Tetratricopept 97.5 0.00021 4.6E-09 45.9 4.9 33 448-480 2-34 (34)
201 KOG4555 TPR repeat-containing 97.5 0.0015 3.3E-08 55.2 10.9 62 452-513 48-109 (175)
202 KOG1130 Predicted G-alpha GTPa 97.5 0.00016 3.4E-09 72.2 5.6 109 394-511 191-305 (639)
203 KOG2796 Uncharacterized conser 97.5 0.0023 5E-08 60.6 12.9 68 447-514 252-319 (366)
204 KOG1174 Anaphase-promoting com 97.5 0.00095 2E-08 66.9 10.7 135 398-550 300-436 (564)
205 KOG3785 Uncharacterized conser 97.5 0.00064 1.4E-08 66.8 9.3 24 403-426 62-85 (557)
206 PF04733 Coatomer_E: Coatomer 97.5 0.00075 1.6E-08 67.2 10.2 68 447-514 201-269 (290)
207 KOG1127 TPR repeat-containing 97.4 0.00075 1.6E-08 74.3 10.6 113 398-514 492-629 (1238)
208 PF13181 TPR_8: Tetratricopept 97.4 0.00024 5.3E-09 45.7 4.2 32 482-513 2-33 (34)
209 KOG1130 Predicted G-alpha GTPa 97.4 0.0015 3.2E-08 65.5 11.5 103 399-510 236-344 (639)
210 PRK10941 hypothetical protein; 97.4 0.002 4.3E-08 63.1 12.2 71 444-514 178-248 (269)
211 KOG1127 TPR repeat-containing 97.4 0.0012 2.5E-08 72.9 11.3 91 455-546 10-102 (1238)
212 PF04733 Coatomer_E: Coatomer 97.4 0.0016 3.4E-08 64.9 11.4 94 404-514 137-234 (290)
213 KOG1156 N-terminal acetyltrans 97.4 0.0027 5.8E-08 67.2 13.4 93 402-509 79-171 (700)
214 PF13512 TPR_18: Tetratricopep 97.4 0.0049 1.1E-07 53.7 12.8 69 447-515 10-81 (142)
215 KOG3060 Uncharacterized conser 97.3 0.012 2.5E-07 55.8 15.7 127 414-549 95-222 (289)
216 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0061 1.3E-07 63.0 14.6 106 411-535 182-287 (395)
217 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0013 2.7E-08 47.1 6.3 42 448-489 2-43 (53)
218 KOG0495 HAT repeat protein [RN 97.2 0.0048 1E-07 65.3 12.9 122 411-550 664-785 (913)
219 KOG4507 Uncharacterized conser 97.2 0.0012 2.7E-08 68.7 8.0 106 407-527 616-721 (886)
220 COG2976 Uncharacterized protei 97.1 0.0087 1.9E-07 54.5 12.1 104 398-514 89-192 (207)
221 KOG4814 Uncharacterized conser 97.1 0.0035 7.6E-08 66.1 10.7 104 398-510 354-457 (872)
222 KOG3364 Membrane protein invol 97.1 0.0052 1.1E-07 52.4 9.7 82 447-529 32-118 (149)
223 KOG3785 Uncharacterized conser 97.1 0.0037 7.9E-08 61.6 9.7 87 407-507 31-117 (557)
224 COG4785 NlpI Lipoprotein NlpI, 97.0 0.0026 5.7E-08 58.6 7.4 70 446-515 64-133 (297)
225 PF13431 TPR_17: Tetratricopep 97.0 0.00086 1.9E-08 43.3 3.1 33 420-467 1-33 (34)
226 KOG4642 Chaperone-dependent E3 96.9 0.0015 3.3E-08 61.0 5.7 72 453-525 16-87 (284)
227 KOG4340 Uncharacterized conser 96.9 0.0025 5.5E-08 61.4 6.9 94 397-505 143-265 (459)
228 PF13181 TPR_8: Tetratricopept 96.9 0.0016 3.6E-08 41.7 4.1 33 448-480 2-34 (34)
229 KOG2376 Signal recognition par 96.9 0.016 3.4E-07 61.0 13.0 112 400-515 112-258 (652)
230 PF10300 DUF3808: Protein of u 96.7 0.015 3.1E-07 62.2 11.6 101 399-511 268-377 (468)
231 PF09986 DUF2225: Uncharacteri 96.7 0.051 1.1E-06 51.5 13.9 103 404-514 83-198 (214)
232 PF13174 TPR_6: Tetratricopept 96.6 0.0034 7.3E-08 39.8 4.0 31 483-513 2-32 (33)
233 PF06552 TOM20_plant: Plant sp 96.6 0.018 4E-07 51.9 9.9 55 462-516 6-70 (186)
234 KOG1586 Protein required for f 96.6 0.089 1.9E-06 49.4 14.5 129 398-535 113-250 (288)
235 KOG4340 Uncharacterized conser 96.6 0.015 3.3E-07 56.1 9.7 103 408-530 20-122 (459)
236 KOG1915 Cell cycle control pro 96.6 0.072 1.6E-06 54.8 14.7 130 401-549 76-205 (677)
237 COG0457 NrfG FOG: TPR repeat [ 96.5 0.1 2.3E-06 48.0 15.1 58 456-513 139-199 (291)
238 smart00028 TPR Tetratricopepti 96.5 0.0048 1E-07 38.0 3.9 32 482-513 2-33 (34)
239 PF08631 SPO22: Meiosis protei 96.4 0.24 5.2E-06 49.1 17.8 141 388-530 25-170 (278)
240 KOG2376 Signal recognition par 96.4 0.058 1.3E-06 56.9 13.5 109 399-514 13-143 (652)
241 COG4976 Predicted methyltransf 96.3 0.0068 1.5E-07 56.4 5.3 68 457-524 5-72 (287)
242 PF13176 TPR_7: Tetratricopept 96.3 0.0083 1.8E-07 39.2 4.3 29 483-511 1-29 (36)
243 COG3118 Thioredoxin domain-con 96.3 0.16 3.5E-06 49.5 14.8 112 399-525 135-281 (304)
244 KOG0376 Serine-threonine phosp 96.3 0.0056 1.2E-07 63.0 5.2 65 450-514 7-71 (476)
245 COG3071 HemY Uncharacterized e 96.3 0.31 6.7E-06 49.2 17.2 107 393-514 79-186 (400)
246 PF13174 TPR_6: Tetratricopept 96.3 0.0073 1.6E-07 38.2 4.0 32 449-480 2-33 (33)
247 KOG1586 Protein required for f 96.3 0.17 3.8E-06 47.5 14.2 110 394-513 29-146 (288)
248 KOG0551 Hsp90 co-chaperone CNS 96.2 0.033 7.2E-07 54.7 10.0 69 447-515 81-153 (390)
249 KOG2396 HAT (Half-A-TPR) repea 96.2 0.13 2.8E-06 53.4 14.4 94 415-524 88-182 (568)
250 KOG1941 Acetylcholine receptor 96.2 0.015 3.2E-07 57.7 7.3 102 400-510 124-235 (518)
251 PF13176 TPR_7: Tetratricopept 96.2 0.0089 1.9E-07 39.0 4.0 28 449-476 1-28 (36)
252 COG0457 NrfG FOG: TPR repeat [ 96.1 0.11 2.3E-06 48.0 12.8 94 407-513 139-234 (291)
253 KOG3824 Huntingtin interacting 96.1 0.03 6.5E-07 54.4 8.5 70 447-516 116-185 (472)
254 KOG1915 Cell cycle control pro 96.0 0.11 2.4E-06 53.4 12.8 139 391-547 397-536 (677)
255 PF12569 NARP1: NMDA receptor- 96.0 0.26 5.7E-06 53.1 16.5 97 400-511 196-292 (517)
256 KOG2053 Mitochondrial inherita 96.0 0.15 3.3E-06 56.3 14.6 91 408-513 19-109 (932)
257 smart00028 TPR Tetratricopepti 96.0 0.012 2.5E-07 36.1 3.9 33 448-480 2-34 (34)
258 KOG3081 Vesicle coat complex C 96.0 0.18 4E-06 48.3 13.2 65 450-514 172-240 (299)
259 PF04184 ST7: ST7 protein; In 96.0 0.1 2.2E-06 54.3 12.4 125 386-510 179-324 (539)
260 PF05843 Suf: Suppressor of fo 95.9 0.16 3.4E-06 50.5 13.5 129 403-546 6-138 (280)
261 KOG3824 Huntingtin interacting 95.7 0.12 2.6E-06 50.3 11.1 84 394-492 112-195 (472)
262 PRK04841 transcriptional regul 95.7 0.19 4.2E-06 58.6 15.3 102 401-511 494-603 (903)
263 COG3071 HemY Uncharacterized e 95.7 0.18 4E-06 50.8 12.5 112 398-529 263-374 (400)
264 KOG4507 Uncharacterized conser 95.7 0.063 1.4E-06 56.5 9.5 103 401-516 215-318 (886)
265 PLN03218 maturation of RBCL 1; 95.6 0.33 7.1E-06 57.0 16.4 62 449-510 581-643 (1060)
266 PLN03218 maturation of RBCL 1; 95.6 0.33 7.2E-06 57.0 16.4 61 449-509 651-712 (1060)
267 PF10952 DUF2753: Protein of u 95.6 0.09 1.9E-06 44.0 8.4 117 400-524 3-124 (140)
268 COG4105 ComL DNA uptake lipopr 95.6 0.088 1.9E-06 50.4 9.6 69 447-515 34-105 (254)
269 KOG1941 Acetylcholine receptor 95.6 0.073 1.6E-06 53.0 9.1 106 401-511 165-276 (518)
270 PF04781 DUF627: Protein of un 95.5 0.13 2.9E-06 42.5 9.3 103 404-511 2-108 (111)
271 KOG1070 rRNA processing protei 95.3 0.27 5.8E-06 56.9 13.7 100 448-549 1531-1631(1710)
272 KOG1585 Protein required for f 95.3 0.2 4.3E-06 47.4 10.7 104 402-514 114-223 (308)
273 COG4700 Uncharacterized protei 95.3 0.35 7.6E-06 43.9 11.6 68 447-514 89-157 (251)
274 KOG3081 Vesicle coat complex C 95.2 0.64 1.4E-05 44.7 13.9 68 447-514 207-275 (299)
275 PF10602 RPN7: 26S proteasome 95.2 0.32 6.9E-06 44.6 11.8 102 398-511 36-143 (177)
276 PF07079 DUF1347: Protein of u 95.2 0.53 1.1E-05 48.5 14.0 53 454-507 469-521 (549)
277 PRK04841 transcriptional regul 95.1 0.22 4.9E-06 58.1 13.3 105 401-512 534-643 (903)
278 PLN03081 pentatricopeptide (PP 95.1 0.18 4E-06 57.0 12.1 64 447-510 494-557 (697)
279 PF06957 COPI_C: Coatomer (COP 95.0 0.13 2.9E-06 53.2 9.5 120 395-514 201-333 (422)
280 KOG2471 TPR repeat-containing 95.0 0.036 7.8E-07 57.0 5.1 121 399-526 241-379 (696)
281 PF14561 TPR_20: Tetratricopep 94.9 0.31 6.8E-06 39.2 9.6 65 466-530 7-72 (90)
282 COG2912 Uncharacterized conser 94.9 0.21 4.5E-06 48.3 9.9 71 444-514 178-248 (269)
283 PF10579 Rapsyn_N: Rapsyn N-te 94.9 0.23 5E-06 38.3 8.1 68 397-476 5-72 (80)
284 KOG1308 Hsp70-interacting prot 94.9 0.013 2.8E-07 57.8 1.7 57 458-514 125-181 (377)
285 KOG2471 TPR repeat-containing 94.8 0.049 1.1E-06 56.1 5.6 98 397-494 282-382 (696)
286 PF12968 DUF3856: Domain of Un 94.8 0.35 7.6E-06 40.5 9.4 75 398-476 55-129 (144)
287 KOG2796 Uncharacterized conser 94.7 0.64 1.4E-05 44.6 12.4 101 401-515 180-286 (366)
288 PF13374 TPR_10: Tetratricopep 94.7 0.066 1.4E-06 35.7 4.5 30 447-476 2-31 (42)
289 PF04184 ST7: ST7 protein; In 94.6 0.45 9.8E-06 49.7 11.9 124 404-542 174-322 (539)
290 PLN03081 pentatricopeptide (PP 94.5 0.39 8.6E-06 54.3 12.9 126 399-529 392-541 (697)
291 COG3947 Response regulator con 94.5 0.21 4.6E-06 48.4 8.8 75 434-508 266-340 (361)
292 PF10255 Paf67: RNA polymerase 94.2 0.18 3.9E-06 52.0 8.1 108 444-553 161-272 (404)
293 PLN03077 Protein ECB2; Provisi 94.0 1.1 2.3E-05 52.2 15.3 124 398-526 554-701 (857)
294 KOG3364 Membrane protein invol 94.0 0.34 7.4E-06 41.6 8.0 41 447-487 71-111 (149)
295 KOG2610 Uncharacterized conser 93.9 0.32 6.9E-06 48.1 8.8 58 449-506 177-234 (491)
296 COG3629 DnrI DNA-binding trans 93.9 0.46 1E-05 46.6 10.0 72 439-510 145-216 (280)
297 COG2976 Uncharacterized protei 93.9 1.6 3.5E-05 40.1 12.7 131 412-547 48-188 (207)
298 PF10516 SHNi-TPR: SHNi-TPR; 93.8 0.11 2.4E-06 34.2 3.9 29 482-510 2-30 (38)
299 PLN03077 Protein ECB2; Provisi 93.8 0.85 1.8E-05 53.0 14.0 108 403-513 529-656 (857)
300 PF03704 BTAD: Bacterial trans 93.5 0.47 1E-05 41.8 8.8 62 398-474 62-123 (146)
301 KOG1070 rRNA processing protei 93.5 0.95 2.1E-05 52.7 12.7 82 447-529 1564-1647(1710)
302 KOG2610 Uncharacterized conser 93.4 1.6 3.5E-05 43.3 12.6 101 399-514 104-208 (491)
303 PF02259 FAT: FAT domain; Int 93.3 1.4 3.1E-05 44.8 13.2 114 400-513 186-341 (352)
304 KOG1585 Protein required for f 93.3 2.2 4.8E-05 40.6 12.7 105 398-512 30-141 (308)
305 PF09613 HrpB1_HrpK: Bacterial 93.2 6 0.00013 35.4 15.3 115 398-530 10-124 (160)
306 KOG0686 COP9 signalosome, subu 93.2 0.49 1.1E-05 48.0 8.9 97 400-508 152-256 (466)
307 PF13374 TPR_10: Tetratricopep 93.0 0.22 4.8E-06 33.0 4.6 30 481-510 2-31 (42)
308 PF08631 SPO22: Meiosis protei 92.8 1.4 3.1E-05 43.6 11.8 100 408-514 3-120 (278)
309 PRK10941 hypothetical protein; 92.7 1.1 2.4E-05 44.0 10.6 79 399-492 182-260 (269)
310 COG5191 Uncharacterized conser 92.7 0.26 5.7E-06 48.1 6.1 76 447-523 107-183 (435)
311 PRK13184 pknD serine/threonine 92.7 1.3 2.8E-05 51.0 12.6 100 403-515 480-586 (932)
312 PF10300 DUF3808: Protein of u 92.6 1.9 4.1E-05 46.1 13.2 68 447-514 267-338 (468)
313 PF14561 TPR_20: Tetratricopep 92.5 1.6 3.4E-05 35.1 9.5 49 417-480 7-55 (90)
314 PF12862 Apc5: Anaphase-promot 92.4 1.5 3.3E-05 35.4 9.5 56 457-512 8-72 (94)
315 PF12862 Apc5: Anaphase-promot 92.2 0.9 2E-05 36.8 7.9 64 408-477 8-71 (94)
316 COG4976 Predicted methyltransf 91.4 0.37 8E-06 45.2 5.3 60 406-480 3-62 (287)
317 cd02682 MIT_AAA_Arch MIT: doma 91.1 1.7 3.6E-05 33.5 7.7 37 395-431 3-39 (75)
318 KOG2053 Mitochondrial inherita 91.0 2.2 4.9E-05 47.6 11.5 109 402-526 47-155 (932)
319 KOG4814 Uncharacterized conser 90.8 2.4 5.2E-05 45.6 11.1 69 446-514 353-427 (872)
320 COG3898 Uncharacterized membra 90.8 3.8 8.3E-05 41.6 11.9 107 407-523 197-303 (531)
321 PF08424 NRDE-2: NRDE-2, neces 90.8 6.2 0.00013 40.0 14.1 105 419-528 6-111 (321)
322 KOG0292 Vesicle coat complex C 90.7 1.7 3.6E-05 48.4 10.1 120 395-514 988-1117(1202)
323 PF05843 Suf: Suppressor of fo 90.7 2 4.3E-05 42.7 10.2 99 449-550 3-102 (280)
324 PF09613 HrpB1_HrpK: Bacterial 90.5 2.8 6E-05 37.5 9.8 82 447-529 10-91 (160)
325 PHA02537 M terminase endonucle 89.9 3 6.6E-05 39.7 10.1 118 408-530 93-225 (230)
326 PF10345 Cohesin_load: Cohesin 89.7 8 0.00017 43.0 15.0 134 389-524 294-455 (608)
327 COG3898 Uncharacterized membra 89.7 4.3 9.4E-05 41.3 11.3 94 401-509 123-216 (531)
328 TIGR03504 FimV_Cterm FimV C-te 89.6 0.55 1.2E-05 32.1 3.6 25 485-509 3-27 (44)
329 PF09986 DUF2225: Uncharacteri 89.5 2.7 5.9E-05 39.8 9.6 81 401-490 128-209 (214)
330 KOG2422 Uncharacterized conser 89.5 24 0.00052 37.9 16.9 140 328-507 256-404 (665)
331 PF13281 DUF4071: Domain of un 89.4 10 0.00022 39.0 14.1 106 447-552 141-260 (374)
332 PF02259 FAT: FAT domain; Int 89.3 8.3 0.00018 39.2 14.0 118 396-525 144-301 (352)
333 KOG2300 Uncharacterized conser 88.8 7 0.00015 40.9 12.3 99 397-511 366-475 (629)
334 PF07720 TPR_3: Tetratricopept 88.8 1.4 3.1E-05 28.6 5.0 33 482-514 2-36 (36)
335 KOG2300 Uncharacterized conser 88.5 11 0.00025 39.4 13.6 101 396-504 44-150 (629)
336 cd02683 MIT_1 MIT: domain cont 88.5 3.1 6.7E-05 32.3 7.6 35 396-430 4-38 (77)
337 COG3914 Spy Predicted O-linked 88.3 8.7 0.00019 41.2 12.9 104 405-524 74-184 (620)
338 KOG2047 mRNA splicing factor [ 88.2 8.7 0.00019 41.6 12.8 150 394-552 421-584 (835)
339 PF07721 TPR_4: Tetratricopept 88.0 0.76 1.6E-05 27.3 3.1 24 482-505 2-25 (26)
340 PF04212 MIT: MIT (microtubule 87.7 2.9 6.3E-05 31.6 7.0 36 395-430 2-37 (69)
341 PF04910 Tcf25: Transcriptiona 87.7 7.9 0.00017 39.8 12.3 98 411-514 7-136 (360)
342 cd02684 MIT_2 MIT: domain cont 87.2 3.2 6.9E-05 32.1 6.9 36 395-430 3-38 (75)
343 KOG2114 Vacuolar assembly/sort 87.0 8.9 0.00019 42.8 12.4 32 397-428 367-398 (933)
344 cd02677 MIT_SNX15 MIT: domain 86.8 3.6 7.7E-05 31.8 7.0 37 395-431 3-39 (75)
345 COG3118 Thioredoxin domain-con 86.7 7.8 0.00017 38.1 10.7 54 453-506 140-193 (304)
346 PF10255 Paf67: RNA polymerase 86.7 1.1 2.4E-05 46.3 5.4 60 450-510 125-193 (404)
347 cd02681 MIT_calpain7_1 MIT: do 86.3 6.1 0.00013 30.6 8.0 35 396-430 4-38 (76)
348 cd02678 MIT_VPS4 MIT: domain c 86.0 5.6 0.00012 30.6 7.8 36 395-430 3-38 (75)
349 KOG1550 Extracellular protein 85.8 6.8 0.00015 43.0 11.3 92 402-512 292-395 (552)
350 cd02656 MIT MIT: domain contai 85.6 6.5 0.00014 30.2 8.0 36 395-430 3-38 (75)
351 PRK15180 Vi polysaccharide bio 85.5 11 0.00025 39.3 11.7 97 401-512 292-388 (831)
352 smart00745 MIT Microtubule Int 85.2 7.3 0.00016 30.0 8.2 37 394-430 4-40 (77)
353 PF11817 Foie-gras_1: Foie gra 85.0 4.2 9.1E-05 39.5 8.3 64 402-474 182-245 (247)
354 KOG1463 26S proteasome regulat 84.7 12 0.00026 37.5 11.0 120 398-530 209-332 (411)
355 PF13281 DUF4071: Domain of un 84.5 6.6 0.00014 40.4 9.6 68 447-514 179-259 (374)
356 PF08424 NRDE-2: NRDE-2, neces 84.4 5.7 0.00012 40.2 9.3 82 468-552 6-99 (321)
357 PF09670 Cas_Cas02710: CRISPR- 84.3 14 0.00031 38.3 12.3 101 397-510 130-270 (379)
358 PF10516 SHNi-TPR: SHNi-TPR; 82.9 2.1 4.5E-05 28.3 3.5 34 399-432 2-35 (38)
359 cd02679 MIT_spastin MIT: domai 81.8 14 0.0003 28.9 8.2 66 394-459 4-75 (79)
360 PF10602 RPN7: 26S proteasome 81.7 35 0.00077 31.2 12.5 65 447-511 36-103 (177)
361 PF07721 TPR_4: Tetratricopept 81.5 2.3 5E-05 25.2 3.1 24 448-471 2-25 (26)
362 TIGR02561 HrpB1_HrpK type III 81.2 14 0.00031 32.5 9.0 60 453-512 16-75 (153)
363 PF10373 EST1_DNA_bind: Est1 D 81.1 5.4 0.00012 39.1 7.5 62 417-493 1-62 (278)
364 PF07720 TPR_3: Tetratricopept 80.8 5.4 0.00012 25.9 4.8 32 449-480 3-36 (36)
365 KOG2581 26S proteasome regulat 80.7 23 0.0005 36.4 11.4 68 447-514 209-280 (493)
366 COG2909 MalT ATP-dependent tra 79.2 68 0.0015 36.5 15.4 115 392-512 409-528 (894)
367 KOG2047 mRNA splicing factor [ 78.5 1E+02 0.0022 33.9 15.8 104 400-514 389-510 (835)
368 KOG0985 Vesicle coat protein c 78.4 26 0.00056 40.3 11.9 106 401-530 1197-1327(1666)
369 COG0790 FOG: TPR repeat, SEL1 78.4 31 0.00067 34.0 12.1 97 400-512 111-222 (292)
370 COG4455 ImpE Protein of avirul 78.2 21 0.00046 33.6 9.6 60 456-515 10-69 (273)
371 KOG1839 Uncharacterized protei 78.1 3.9 8.4E-05 47.8 5.9 107 396-510 930-1044(1236)
372 cd02680 MIT_calpain7_2 MIT: do 76.7 4.5 9.7E-05 31.2 4.1 36 395-430 3-38 (75)
373 COG2912 Uncharacterized conser 76.2 15 0.00032 35.9 8.4 76 401-491 184-259 (269)
374 KOG2422 Uncharacterized conser 76.1 52 0.0011 35.5 12.8 118 402-522 239-384 (665)
375 PF10345 Cohesin_load: Cohesin 76.0 84 0.0018 35.0 15.7 106 396-511 57-169 (608)
376 TIGR02710 CRISPR-associated pr 75.5 44 0.00094 34.5 12.0 63 399-471 131-195 (380)
377 KOG3617 WD40 and TPR repeat-co 74.9 26 0.00057 39.3 10.6 109 401-510 861-996 (1416)
378 PF04910 Tcf25: Transcriptiona 74.7 73 0.0016 32.8 13.7 115 395-525 100-234 (360)
379 PF14863 Alkyl_sulf_dimr: Alky 73.5 10 0.00022 33.3 6.0 49 448-496 71-119 (141)
380 COG0790 FOG: TPR repeat, SEL1 73.0 62 0.0014 31.8 12.6 80 415-514 172-270 (292)
381 TIGR02561 HrpB1_HrpK type III 72.1 71 0.0015 28.3 13.3 107 401-525 13-119 (153)
382 KOG1310 WD40 repeat protein [G 72.1 17 0.00037 38.6 8.1 54 461-514 388-444 (758)
383 PF00244 14-3-3: 14-3-3 protei 72.0 16 0.00034 35.2 7.6 54 414-475 142-197 (236)
384 KOG2561 Adaptor protein NUB1, 71.7 24 0.00053 36.5 8.9 112 394-509 159-295 (568)
385 COG5091 SGT1 Suppressor of G2 71.4 12 0.00027 36.0 6.4 104 406-514 3-112 (368)
386 TIGR03504 FimV_Cterm FimV C-te 70.8 7.4 0.00016 26.6 3.6 27 450-476 2-28 (44)
387 PF11207 DUF2989: Protein of u 70.0 36 0.00078 31.7 9.0 54 447-501 141-198 (203)
388 PF10373 EST1_DNA_bind: Est1 D 69.9 18 0.00039 35.4 7.8 60 466-526 1-60 (278)
389 KOG3617 WD40 and TPR repeat-co 69.6 35 0.00076 38.4 10.1 102 408-510 810-941 (1416)
390 KOG1550 Extracellular protein 69.0 53 0.0011 36.0 11.8 92 401-511 328-427 (552)
391 KOG0530 Protein farnesyltransf 68.4 1.2E+02 0.0027 29.6 12.9 100 410-525 55-156 (318)
392 KOG4459 Membrane-associated pr 67.3 22 0.00048 37.0 7.8 116 400-526 33-177 (471)
393 PF11817 Foie-gras_1: Foie gra 66.9 46 0.001 32.2 9.8 84 415-507 155-244 (247)
394 COG3914 Spy Predicted O-linked 66.5 1.1E+02 0.0025 33.1 12.9 69 453-522 73-142 (620)
395 COG3629 DnrI DNA-binding trans 66.2 30 0.00065 34.1 8.2 63 398-475 153-215 (280)
396 COG4455 ImpE Protein of avirul 66.1 1.2E+02 0.0027 28.7 12.3 64 404-482 7-70 (273)
397 KOG1839 Uncharacterized protei 65.8 19 0.0004 42.4 7.6 108 397-511 972-1087(1236)
398 PF07079 DUF1347: Protein of u 64.9 42 0.00091 35.2 9.1 60 398-473 462-521 (549)
399 PF10579 Rapsyn_N: Rapsyn N-te 64.9 58 0.0013 25.4 7.8 58 452-509 11-71 (80)
400 KOG0739 AAA+-type ATPase [Post 64.7 32 0.00069 34.1 7.8 38 392-429 4-41 (439)
401 PF14863 Alkyl_sulf_dimr: Alky 63.9 40 0.00087 29.6 7.8 51 479-530 68-118 (141)
402 KOG2041 WD40 repeat protein [G 63.5 24 0.00052 38.7 7.4 27 478-504 849-875 (1189)
403 PF09205 DUF1955: Domain of un 63.5 89 0.0019 27.2 9.3 61 450-510 88-149 (161)
404 PF11846 DUF3366: Domain of un 63.4 34 0.00074 31.6 7.9 51 463-514 127-177 (193)
405 KOG0529 Protein geranylgeranyl 63.1 1.9E+02 0.0042 30.0 13.7 68 458-526 86-155 (421)
406 cd02682 MIT_AAA_Arch MIT: doma 62.5 38 0.00082 26.1 6.4 16 499-514 31-46 (75)
407 KOG3783 Uncharacterized conser 62.4 86 0.0019 33.6 11.1 73 401-487 270-342 (546)
408 KOG0985 Vesicle coat protein c 62.4 1.5E+02 0.0032 34.6 13.2 102 403-510 1053-1162(1666)
409 COG3947 Response regulator con 61.9 22 0.00048 35.0 6.2 49 480-529 278-326 (361)
410 COG4941 Predicted RNA polymera 60.8 83 0.0018 31.7 10.0 65 450-514 332-398 (415)
411 COG4649 Uncharacterized protei 60.8 1.4E+02 0.0029 27.4 13.0 99 400-509 96-195 (221)
412 PF15015 NYD-SP12_N: Spermatog 60.5 1.2E+02 0.0026 31.7 11.2 29 486-514 233-261 (569)
413 cd00280 TRFH Telomeric Repeat 60.4 52 0.0011 30.1 7.9 33 450-483 114-146 (200)
414 PF11207 DUF2989: Protein of u 58.9 29 0.00063 32.3 6.3 63 395-469 138-200 (203)
415 PF01239 PPTA: Protein prenylt 58.8 26 0.00057 21.5 4.3 29 466-494 2-30 (31)
416 KOG0889 Histone acetyltransfer 58.7 1.1E+02 0.0023 40.5 12.5 101 444-546 2809-2918(3550)
417 cd02683 MIT_1 MIT: domain cont 58.7 51 0.0011 25.5 6.7 17 498-514 30-46 (77)
418 PF04781 DUF627: Protein of un 55.2 1.2E+02 0.0027 25.3 10.4 62 453-514 2-77 (111)
419 smart00386 HAT HAT (Half-A-TPR 54.8 30 0.00066 20.6 4.2 28 495-523 1-28 (33)
420 KOG0530 Protein farnesyltransf 53.4 1E+02 0.0022 30.1 9.0 78 449-527 149-232 (318)
421 COG1747 Uncharacterized N-term 52.8 2.5E+02 0.0055 30.2 12.3 118 396-514 130-292 (711)
422 KOG1464 COP9 signalosome, subu 52.7 39 0.00084 32.9 6.1 52 459-510 39-94 (440)
423 PRK13184 pknD serine/threonine 52.3 1.3E+02 0.0029 35.1 11.4 79 449-529 554-641 (932)
424 KOG0276 Vesicle coat complex C 52.2 41 0.00089 36.4 6.8 75 398-472 666-746 (794)
425 KOG3616 Selective LIM binding 52.1 89 0.0019 34.8 9.2 20 487-506 771-790 (1636)
426 PF04053 Coatomer_WDAD: Coatom 51.5 90 0.0019 33.2 9.4 26 448-473 348-373 (443)
427 smart00101 14_3_3 14-3-3 homol 50.9 63 0.0014 31.2 7.5 54 414-475 144-199 (244)
428 KOG0880 Peptidyl-prolyl cis-tr 50.9 19 0.0004 33.2 3.5 41 291-337 134-177 (217)
429 COG2178 Predicted RNA-binding 49.9 1.7E+02 0.0036 27.2 9.4 99 399-506 30-146 (204)
430 KOG1914 mRNA cleavage and poly 49.6 2.9E+02 0.0063 29.9 12.3 95 447-544 20-117 (656)
431 COG5159 RPN6 26S proteasome re 48.7 64 0.0014 31.7 7.0 118 398-526 206-326 (421)
432 KOG2396 HAT (Half-A-TPR) repea 48.6 1.3E+02 0.0029 32.0 9.7 85 463-550 87-172 (568)
433 KOG0546 HSP90 co-chaperone CPR 48.5 14 0.0003 37.2 2.6 77 404-495 281-357 (372)
434 PRK15180 Vi polysaccharide bio 48.3 3.4E+02 0.0074 28.9 12.4 64 465-529 760-823 (831)
435 PF04190 DUF410: Protein of un 47.9 2.7E+02 0.006 27.1 11.9 95 398-504 10-113 (260)
436 COG2909 MalT ATP-dependent tra 47.5 1.8E+02 0.0038 33.3 11.0 88 398-495 458-551 (894)
437 PF08626 TRAPPC9-Trs120: Trans 47.0 2E+02 0.0043 35.0 12.4 36 395-430 239-274 (1185)
438 PF01535 PPR: PPR repeat; Int 46.1 32 0.00069 20.4 3.2 26 450-475 3-28 (31)
439 KOG3616 Selective LIM binding 45.2 1.1E+02 0.0025 34.0 8.8 58 457-514 960-1028(1636)
440 COG1747 Uncharacterized N-term 44.7 3.5E+02 0.0076 29.2 11.9 80 448-530 67-146 (711)
441 PF07163 Pex26: Pex26 protein; 44.7 2.5E+02 0.0055 27.7 10.3 112 402-515 39-151 (309)
442 KOG0529 Protein geranylgeranyl 44.4 2.9E+02 0.0062 28.8 11.1 90 410-514 87-182 (421)
443 KOG1463 26S proteasome regulat 44.0 3.7E+02 0.0079 27.4 11.7 65 446-510 127-197 (411)
444 KOG0890 Protein kinase of the 42.7 1.2E+02 0.0026 38.5 9.4 95 403-514 1388-1482(2382)
445 PF08238 Sel1: Sel1 repeat; I 42.5 56 0.0012 20.7 4.1 29 482-510 2-37 (39)
446 PF07219 HemY_N: HemY protein 42.0 1.6E+02 0.0034 24.3 7.7 48 448-495 60-107 (108)
447 COG4649 Uncharacterized protei 41.9 1.3E+02 0.0029 27.4 7.4 50 444-494 164-213 (221)
448 PF12739 TRAPPC-Trs85: ER-Golg 41.9 2.7E+02 0.0059 29.2 11.3 102 400-510 210-329 (414)
449 KOG3807 Predicted membrane pro 41.5 3.9E+02 0.0085 27.0 11.5 59 449-507 277-337 (556)
450 KOG1914 mRNA cleavage and poly 41.3 1.4E+02 0.003 32.2 8.5 72 471-546 10-81 (656)
451 PF10952 DUF2753: Protein of u 40.6 1.2E+02 0.0025 26.0 6.4 60 450-509 4-78 (140)
452 smart00671 SEL1 Sel1-like repe 40.5 63 0.0014 19.9 4.1 28 482-509 2-33 (36)
453 PF12652 CotJB: CotJB protein; 40.2 1.1E+02 0.0023 23.9 5.8 52 490-547 4-55 (78)
454 KOG0276 Vesicle coat complex C 39.9 73 0.0016 34.6 6.4 50 456-510 646-695 (794)
455 PF12854 PPR_1: PPR repeat 39.9 76 0.0016 19.9 4.2 26 480-505 6-31 (34)
456 KOG4563 Cell cycle-regulated h 39.8 87 0.0019 31.9 6.6 39 394-432 37-75 (400)
457 KOG1464 COP9 signalosome, subu 39.4 2.4E+02 0.0052 27.6 9.2 108 398-510 65-174 (440)
458 KOG3783 Uncharacterized conser 38.8 2.8E+02 0.0061 29.9 10.4 67 448-514 450-524 (546)
459 PF08969 USP8_dimer: USP8 dime 38.1 67 0.0015 26.9 4.9 44 388-431 28-71 (115)
460 PF13812 PPR_3: Pentatricopept 37.6 81 0.0018 19.0 4.2 27 449-475 3-29 (34)
461 PRK10869 recombination and rep 37.5 4.5E+02 0.0097 28.9 12.4 50 465-514 248-297 (553)
462 cd09034 BRO1_Alix_like Protein 37.2 1.6E+02 0.0036 29.8 8.6 30 481-510 251-280 (345)
463 TIGR00756 PPR pentatricopeptid 37.0 71 0.0015 19.2 3.9 26 450-475 3-28 (35)
464 PF07219 HemY_N: HemY protein 36.6 1.7E+02 0.0036 24.2 7.0 35 392-426 53-87 (108)
465 PF03097 BRO1: BRO1-like domai 36.0 3.3E+02 0.0072 28.0 10.8 30 481-510 239-268 (377)
466 PF15469 Sec5: Exocyst complex 35.9 3.4E+02 0.0073 24.6 11.1 26 405-430 93-118 (182)
467 KOG1258 mRNA processing protei 35.8 3.5E+02 0.0075 29.6 10.6 98 449-548 299-396 (577)
468 COG3014 Uncharacterized protei 35.4 2.6E+02 0.0056 28.4 8.9 29 483-511 127-155 (449)
469 KOG1811 Predicted Zn2+-binding 35.0 1.8E+02 0.0039 31.7 8.3 61 460-523 569-629 (1141)
470 PF09797 NatB_MDM20: N-acetylt 34.8 2.5E+02 0.0054 28.8 9.6 46 461-506 197-242 (365)
471 PRK11619 lytic murein transgly 34.6 3.1E+02 0.0067 30.8 10.7 54 456-509 321-374 (644)
472 KOG1497 COP9 signalosome, subu 34.4 5E+02 0.011 26.2 13.0 85 443-529 99-193 (399)
473 COG5191 Uncharacterized conser 34.2 50 0.0011 32.9 3.8 69 402-485 111-180 (435)
474 cd00280 TRFH Telomeric Repeat 33.5 92 0.002 28.6 5.1 40 488-529 118-157 (200)
475 cd09243 BRO1_Brox_like Protein 32.9 2.4E+02 0.0052 29.0 8.8 16 415-430 211-226 (353)
476 KOG2581 26S proteasome regulat 32.5 6.1E+02 0.013 26.6 11.3 107 396-514 245-353 (493)
477 KOG4056 Translocase of outer m 32.4 3.1E+02 0.0068 23.8 7.8 43 389-435 72-114 (143)
478 cd02677 MIT_SNX15 MIT: domain 32.3 2.3E+02 0.005 21.7 6.8 15 495-509 20-34 (75)
479 smart00745 MIT Microtubule Int 32.3 1.3E+02 0.0029 22.8 5.5 14 500-513 34-47 (77)
480 KOG3540 Beta amyloid precursor 31.5 6.6E+02 0.014 26.7 11.7 72 413-499 327-398 (615)
481 cd02681 MIT_calpain7_1 MIT: do 30.9 1E+02 0.0023 23.8 4.4 16 494-509 19-34 (76)
482 KOG1920 IkappaB kinase complex 30.4 5.2E+02 0.011 30.8 11.4 43 389-432 865-907 (1265)
483 PF09122 DUF1930: Domain of un 30.0 59 0.0013 23.8 2.7 21 91-111 36-56 (68)
484 PF14858 DUF4486: Domain of un 29.7 2E+02 0.0044 31.0 7.7 70 403-475 156-225 (542)
485 KOG0890 Protein kinase of the 29.5 1.3E+03 0.029 30.0 15.2 88 414-511 1645-1732(2382)
486 cd09241 BRO1_ScRim20-like Prot 29.2 2.4E+02 0.0052 28.9 8.2 29 481-509 237-265 (355)
487 KOG2582 COP9 signalosome, subu 28.6 90 0.0019 31.8 4.6 100 400-510 104-212 (422)
488 PF10938 YfdX: YfdX protein; 28.4 2.8E+02 0.006 24.7 7.4 113 397-509 1-145 (155)
489 KOG4563 Cell cycle-regulated h 28.0 97 0.0021 31.6 4.8 56 449-504 43-106 (400)
490 PF02064 MAS20: MAS20 protein 27.5 2.6E+02 0.0055 23.8 6.6 41 391-435 56-96 (121)
491 cd02679 MIT_spastin MIT: domai 27.5 1.1E+02 0.0024 23.9 4.1 33 462-509 4-36 (79)
492 cd09240 BRO1_Alix Protein-inte 27.2 6.8E+02 0.015 25.5 11.1 30 481-510 255-284 (346)
493 PRK15490 Vi polysaccharide bio 27.1 5.4E+02 0.012 28.3 10.5 60 455-514 16-75 (578)
494 COG5187 RPN7 26S proteasome re 25.7 4E+02 0.0088 26.5 8.3 66 447-512 115-186 (412)
495 TIGR03362 VI_chp_7 type VI sec 25.5 6.9E+02 0.015 25.0 11.4 50 459-509 111-160 (301)
496 cd02656 MIT MIT: domain contai 25.1 3E+02 0.0066 20.7 6.4 14 500-513 32-45 (75)
497 KOG1538 Uncharacterized conser 24.6 1.4E+02 0.003 32.9 5.4 50 457-509 783-832 (1081)
498 cd02680 MIT_calpain7_2 MIT: do 24.6 3.3E+02 0.0072 21.0 7.9 18 493-510 18-35 (75)
499 KOG1497 COP9 signalosome, subu 24.6 7.4E+02 0.016 25.1 13.5 112 389-510 96-213 (399)
500 PF02184 HAT: HAT (Half-A-TPR) 24.2 1.6E+02 0.0035 18.6 3.5 18 496-513 2-19 (32)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-65 Score=499.83 Aligned_cols=354 Identities=38% Similarity=0.604 Sum_probs=329.5
Q ss_pred ecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCC
Q 008780 161 NEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240 (554)
Q Consensus 161 ~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~ 240 (554)
.+|.|+++|..||.|.+||++++.||+.|+||.+++|+.|.+|.|+++.+|..++.+|+.|+ ...+|
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g~-------------~~~pp 67 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKGE-------------AGSPP 67 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccccc-------------cCCCC
Confidence 37899999999999999999999999999999889999999999999999999999999844 24678
Q ss_pred CCCCcceEEEEEeeeeeeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCe
Q 008780 241 VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPL 320 (554)
Q Consensus 241 ~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~ 320 (554)
.+|++++|.|+|+|+ ||+|+|+|+++|.|. ..+|..+..|++||.|++.+ + +|+++. ..+
T Consensus 68 ~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~V~v~~~G~~~~--~-~f~~~~-----~~f 127 (397)
T KOG0543|consen 68 KIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAVVKVHLEGELED--G-VFDQRE-----LRF 127 (397)
T ss_pred CCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcEEEEEEEEEECC--c-ceeccc-----cce
Confidence 899999999999998 899999999999996 34689999999999999977 4 665443 348
Q ss_pred EEEcCC-CCchHHHHHHHhcCCcCcEEEEEeCCCCccc-cCCCCCCCCCCCeEEEEEEEcccc-cCCCCCCCChhhhhHH
Q 008780 321 EFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIELLGFE-KPKDWTGLSFDGIMDE 397 (554)
Q Consensus 321 ~f~lG~-~~v~~g~~~~l~~M~~GE~~~~~i~~~~~yg-~~g~~~~ip~~~~l~~~ieL~~~~-~~~~~~~~~~~~~~~~ 397 (554)
.|.+|+ ..||.||+.||..|++||++.|+|+|+|+|| ..++++.||||+++.|+|+|+++. .....|.|..++++..
T Consensus 128 e~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~ 207 (397)
T KOG0543|consen 128 EFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEA 207 (397)
T ss_pred EEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHH
Confidence 888988 5799999999999999999999999999999 667788999999999999999999 6677788888889999
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
|...++.||.+|++|+|..|...|++|+.+|++..+.++++.+...+++..||+|+|+||+|+++|..|+.+|+++|+++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~~~~~ 550 (554)
|+|+||+||+|+|+..+++|+.|+.+|++|++++|+| .+++..|..|+++.+ ++++++ ++|++||.+.+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kek--k~y~~mF~k~~~ 358 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEK--KMYANMFAKLAE 358 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcccc
Confidence 9999999999999999999999999999999999999 789999999999998 888888 999999998653
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-35 Score=284.93 Aligned_cols=351 Identities=25% Similarity=0.348 Sum_probs=269.2
Q ss_pred ecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccC
Q 008780 37 RPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116 (554)
Q Consensus 37 ~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg 116 (554)
++|.|..+|..||.|.+||++++.||+.||||.+ +.|+.|.+|.|+++.||+.++..|+. |
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g 61 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G 61 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence 4799998899999999999999999999999995 67999999999999999999999998 5
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEEEeeeccccccCCCCeEEEEEecCCC-cCCCCCCceEEEEEEEEeCCCcEEEecCCC
Q 008780 117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREG 195 (554)
Q Consensus 117 ~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~k~i~~~g~g-~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~ 195 (554)
..+.| +.||++++|.|+|+|+ |.+++++|+++|.| ...|..|..|+|||.+++.++ +|+++.
T Consensus 62 ~~~~p----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~-- 124 (397)
T KOG0543|consen 62 EAGSP----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE-- 124 (397)
T ss_pred ccCCC----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc--
Confidence 55554 8899999999999998 78999999999999 899999999999999999888 555443
Q ss_pred ccEEEEeCC-CCccchHHHHhccCCcCcEEEEEEeCCccCCC--CCCCCCCCcceEEEEEeeeeeeeeecccCCccEEEE
Q 008780 196 EPYFFTFGK-SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 272 (554)
Q Consensus 196 ~p~~~~~g~-~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~--~~~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~ 272 (554)
-.|.|..|+ ..++.||+.+|..|++||.+.|+|+|+|+||+ ..++.|||+++|.|+|+|+++....+.+
T Consensus 125 ~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s-------- 196 (397)
T KOG0543|consen 125 LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDES-------- 196 (397)
T ss_pred cceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccc--------
Confidence 237777887 57999999999999999999999999999995 4668999999999999999995211100
Q ss_pred EeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCC-CchHHHHHHHhcCCcCcEEEEEeC
Q 008780 273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGEIALVTCP 351 (554)
Q Consensus 273 il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~-~v~~g~~~~l~~M~~GE~~~~~i~ 351 (554)
+. ......+.+..+.- +.|+ .-|.-|.- ..+.-++.|+.-|.
T Consensus 197 ------~~-------~~~~e~l~~A~~~k-e~Gn-------------~~fK~gk~~~A~~~Yerav~~l~---------- 239 (397)
T KOG0543|consen 197 ------WK-------MFAEERLEAADRKK-ERGN-------------VLFKEGKFKLAKKRYERAVSFLE---------- 239 (397)
T ss_pred ------cc-------cchHHHHHHHHHHH-Hhhh-------------HHHhhchHHHHHHHHHHHHHHhh----------
Confidence 00 00000000000000 0011 12223221 13344555554431
Q ss_pred CCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780 352 PDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (554)
Q Consensus 352 ~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~ 431 (554)
|. . ..++ + ..-...--....+.+.+-++.+.++|..|+..-.++|+ +
T Consensus 240 --~~--~-----~~~~-----------------e---e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe----~ 286 (397)
T KOG0543|consen 240 --YR--R-----SFDE-----------------E---EQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE----L 286 (397)
T ss_pred --cc--c-----cCCH-----------------H---HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh----c
Confidence 00 0 0000 0 00000111234567889999999999999999999999 8
Q ss_pred CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 008780 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEMMMKV 510 (554)
Q Consensus 432 ~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A-~~~~~~al~l 510 (554)
+|.+ ..+++.+|.|++.+++|+.|+..+++|++++|.|-.+.-.+..+.....++.+. .+.|.+.+..
T Consensus 287 ~~~N-----------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 287 DPNN-----------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CCCc-----------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9988 899999999999999999999999999999999988888888888888877766 6777777775
Q ss_pred CC
Q 008780 511 DK 512 (554)
Q Consensus 511 ~P 512 (554)
-+
T Consensus 356 ~~ 357 (397)
T KOG0543|consen 356 LA 357 (397)
T ss_pred cc
Confidence 43
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-35 Score=265.15 Aligned_cols=276 Identities=26% Similarity=0.350 Sum_probs=239.5
Q ss_pred CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcCc
Q 008780 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (554)
Q Consensus 265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~GE 344 (554)
.-.+|.|+|+..|.|..|..+ .|..|++||.....++.+++++||+. .|+|+++.+|..+-.+-|+.+|.+|+++|
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~E 83 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHE 83 (329)
T ss_pred cchhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence 446789999999999988775 58999999999999988889988875 69999999999999999999999999999
Q ss_pred EEEEEeCCCC--------------ccccCCCC--------------------C---CCCCCCeEEEEEEEcccccCC---
Q 008780 345 IALVTCPPDY--------------AYDKFLRP--------------------A---NVPEGAHIQWEIELLGFEKPK--- 384 (554)
Q Consensus 345 ~~~~~i~~~~--------------~yg~~g~~--------------------~---~ip~~~~l~~~ieL~~~~~~~--- 384 (554)
.+.|+|.... +.|+.... . ....-.+|+|.|+|+.++.|.
T Consensus 84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 9999995421 11221100 0 000015799999999999874
Q ss_pred -CCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhHHHHHHHHHHHHHH
Q 008780 385 -DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLK 459 (554)
Q Consensus 385 -~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~nla~~~~k 459 (554)
+.|.|+-++++.....+.++||.+|+.|+|.+|..+|+.|+..++++ .|.+ .+|.++......++.|.+.|+++
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-~eW~eLdk~~tpLllNy~QC~L~ 242 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE-PEWLELDKMITPLLLNYCQCLLK 242 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHHHhhhHHHHhHHHHHhh
Confidence 56899999999999999999999999999999999999999988775 3554 57888888889999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHH
Q 008780 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLE 538 (554)
Q Consensus 460 l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~ 538 (554)
.++|-+++++|..+|..+|.|.||||+||.|+...-+..+|.++|.++|+++|.-.+.+..+|+.+..+++ ++...+
T Consensus 243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr-- 320 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDR-- 320 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 99999999999999999999999999999999999999999999999999999988889999999998887 555666
Q ss_pred HHHHhhccc
Q 008780 539 NSLKGCLTR 547 (554)
Q Consensus 539 ~~y~~~f~~ 547 (554)
..|++||+.
T Consensus 321 ~~~~kmfs~ 329 (329)
T KOG0545|consen 321 LRCRKMFSQ 329 (329)
T ss_pred HHHHHhcCC
Confidence 789999973
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-29 Score=215.92 Aligned_cols=171 Identities=21% Similarity=0.296 Sum_probs=141.5
Q ss_pred EecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecccccc---CCCCeEE
Q 008780 81 HVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA---DDFGVVK 157 (554)
Q Consensus 81 ~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~---~d~gl~k 157 (554)
|++|.+.+++|.+.++.+|+.|+++.+.|||+++||..+.. .-..++|.+.++.+..+.... .+..+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I 72 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG--------DLNILVITILLVLLFRASAAEKWNPDEELQI 72 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc--------cccceEEEeeeeehhhhhhhhhcCCCCceeE
Confidence 35788999999999999999999999999999999965543 123577888777765433222 2234444
Q ss_pred EEEecCC-CcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCC
Q 008780 158 KVINEGQ-GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTP 235 (554)
Q Consensus 158 ~i~~~g~-g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g 235 (554)
.++.+-. .....+.||.|.+||++.+.||++||||+ ++.|++|.+|.|++|+||+.+|.+|++||++.++|||+++||
T Consensus 73 ~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG 152 (188)
T KOG0549|consen 73 GVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYG 152 (188)
T ss_pred EEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCc
Confidence 4444311 44788999999999999999999999997 577999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCcceEEEEEeeeeeee
Q 008780 236 SPL-MPVVEGCEEVHFEVELVHLIQ 259 (554)
Q Consensus 236 ~~~-~~~ip~~~~l~~~v~l~~~~~ 259 (554)
+++ ++.||+++.|.|+|||+++.+
T Consensus 153 ~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 153 ERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred cCCCCCCCCCCeeEEEEEEEEEeec
Confidence 965 566999999999999999964
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=215.14 Aligned_cols=175 Identities=23% Similarity=0.337 Sum_probs=146.5
Q ss_pred EEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcceEEEEEeeeeeeee---ecccCCccEEEEEeeC
Q 008780 200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQV---RDMLGDGRLIKRRIRD 276 (554)
Q Consensus 200 ~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~~---~d~~~dg~l~k~il~~ 276 (554)
+++|.+.+|||++.+|.+|+.||+..+++||+++||.... ..--.+++.+.++.+... +....+..+.-.++++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~ 77 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---GDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKK 77 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---ccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEEC
Confidence 3578899999999999999999999999999999994322 122356777777777643 4455667777777777
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcCcEEEEEeCCCCcc
Q 008780 277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356 (554)
Q Consensus 277 G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~GE~~~~~i~~~~~y 356 (554)
-.... .....||.+.+||+|.+.| |++| ||++. +|+|++|+||.++||+|||.+|.+|++||+..++|||+++|
T Consensus 78 p~~C~--~kak~GD~l~~HY~g~leD--Gt~f-dSS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgY 151 (188)
T KOG0549|consen 78 PEECP--EKAKKGDTLHVHYTGSLED--GTKF-DSSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGY 151 (188)
T ss_pred Ccccc--ccccCCCEEEEEEEEEecC--CCEE-eeecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccC
Confidence 33221 1237899999999999988 9998 55565 78999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCeEEEEEEEcccccC
Q 008780 357 DKFLRPANVPEGAHIQWEIELLGFEKP 383 (554)
Q Consensus 357 g~~g~~~~ip~~~~l~~~ieL~~~~~~ 383 (554)
|+.|.++.||+++.|.|+|||+.+...
T Consensus 152 G~~G~~~~IP~~A~LiFdiELv~i~~~ 178 (188)
T KOG0549|consen 152 GERGAPPKIPGDAVLIFDIELVKIERG 178 (188)
T ss_pred ccCCCCCCCCCCeeEEEEEEEEEeecC
Confidence 999999899999999999999999874
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=182.30 Aligned_cols=106 Identities=30% Similarity=0.608 Sum_probs=102.6
Q ss_pred CeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEE
Q 008780 30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109 (554)
Q Consensus 30 g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~i 109 (554)
|+.++++.+|+|...|+.||.|++||++.+.||+.|||+.+ +++||.|.+|.+++|.||++++..|.+||++.++|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d----r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti 77 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD----RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI 77 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc----cCCCeeEEecCcceeechhhcchhccccccceeee
Confidence 78999999999998899999999999999999999999999 88999999999999999999999999999999999
Q ss_pred eCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 110 p~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
+|+++||..|.| ..||||++|+|+|||+++
T Consensus 78 ~pd~aYG~~G~p----~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 78 SPDYAYGPRGHP----GGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccccCCCCCC----CccCCCcEEEEEEEEEec
Confidence 999999999965 789999999999999987
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=207.92 Aligned_cols=114 Identities=31% Similarity=0.623 Sum_probs=106.9
Q ss_pred ccccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCC
Q 008780 19 DDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98 (554)
Q Consensus 19 ~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~ 98 (554)
+.+...+++++||.|++++.|+|.. |+.+|.|.+||++++.||++|||+++ ++.|+.|.+| ++|+||+++|.+
T Consensus 91 ~k~~~v~~~~sgl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~----rg~p~~f~l~--~vI~Gw~egl~~ 163 (205)
T COG0545 91 AKEKGVKTLPSGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYD----RGQPAEFPLG--GVIPGWDEGLQG 163 (205)
T ss_pred cccCCceECCCCcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccc----cCCCceeecC--CeeehHHHHHhh
Confidence 3445677799999999999999999 99999999999999999999999998 8999999997 999999999999
Q ss_pred CCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 99 m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
|++|++|+++|||++|||.+|.+ ..||||++|+|+|+|+++
T Consensus 164 M~vG~k~~l~IP~~laYG~~g~~----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 164 MKVGGKRKLTIPPELAYGERGVP----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CCCCceEEEEeCchhccCcCCCC----CCCCCCCeEEEEEEEEec
Confidence 99999999999999999999975 559999999999999987
No 8
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.1e-26 Score=174.37 Aligned_cols=107 Identities=36% Similarity=0.597 Sum_probs=98.8
Q ss_pred cEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcCcEEE
Q 008780 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 347 (554)
Q Consensus 268 ~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~GE~~~ 347 (554)
++.+.+|.+|+|.+ .|..|++|++||+|.+.| |+.| ||+.| +++|++|.+|.|+||.||+.++..|.+||++.
T Consensus 2 Gv~~~~i~~Gdg~t---fpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak 74 (108)
T KOG0544|consen 2 GVEKQVISPGDGRT---FPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK 74 (108)
T ss_pred CceeEEeeCCCCcc---cCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence 47789999999964 358999999999999988 9998 77777 78999999999999999999999999999999
Q ss_pred EEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780 348 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (554)
Q Consensus 348 ~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~ 381 (554)
++|+|+||||..|.+..||||++|.|+|||+++.
T Consensus 75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred eeeccccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 9999999999999999999999999999999763
No 9
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.4e-23 Score=182.98 Aligned_cols=104 Identities=24% Similarity=0.333 Sum_probs=98.3
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEec-CCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~-~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~ 229 (554)
...|+.++++..|.| ..|+.++.|+|||++++.||++|||| .+++|+.|++| ++||||.+||.+|++|++..++||
T Consensus 99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP 175 (205)
T COG0545 99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP 175 (205)
T ss_pred CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence 557999999999999 88999999999999999999999999 57999999999 999999999999999999999999
Q ss_pred CCccCCCCCC-CCCCCcceEEEEEeeeee
Q 008780 230 SQYLTPSPLM-PVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 230 ~~~~~g~~~~-~~ip~~~~l~~~v~l~~~ 257 (554)
|+++||..+. ..||||++|+|+|+|+++
T Consensus 176 ~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 176 PELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred chhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999874 449999999999999986
No 10
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=1.9e-22 Score=187.97 Aligned_cols=112 Identities=24% Similarity=0.453 Sum_probs=105.2
Q ss_pred ccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCC
Q 008780 21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100 (554)
Q Consensus 21 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~ 100 (554)
+...+++++|++|+++++|+|.. |+.||.|.+||++++.||++|++|+. ++.|+.|.+| ++++||+++|.+|+
T Consensus 94 ~~gv~~t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~----~g~P~~f~l~--~vipG~~eaL~~M~ 166 (206)
T PRK11570 94 KEGVNSTESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVA----RGEPAEFPVN--GVIPGWIEALTLMP 166 (206)
T ss_pred cCCcEECCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccC----CCCCeEEEee--chhhHHHHHHcCCC
Confidence 55678899999999999999997 99999999999999999999999997 7789999995 69999999999999
Q ss_pred CCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 101 ~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
+|+++.|+|||+++||..+.+ +.|||+++|+|+|+|++|
T Consensus 167 ~G~k~~~~IP~~lAYG~~g~~----~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 167 VGSKWELTIPHELAYGERGAG----ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CCCEEEEEECHHHcCCCCCCC----CCcCCCCeEEEEEEEEEE
Confidence 999999999999999999875 789999999999999987
No 11
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-22 Score=186.48 Aligned_cols=117 Identities=24% Similarity=0.474 Sum_probs=107.5
Q ss_pred CCcccccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEE-EecCCCccchhHH
Q 008780 16 PSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIR-HVLGKSKILLGLL 93 (554)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~-~~~g~~~~~~g~~ 93 (554)
.+++.....+++++||.|+-++.|+|.. |..|+.|.+||.+++. +|++|++++ .+.|+. |.+|.+++|+||+
T Consensus 107 ~~ek~~~~~~tl~~Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~-----~~kp~~~f~lg~g~VIkG~d 180 (226)
T KOG0552|consen 107 EVEKQKPKSRTLPGGLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNF-----GGKPFKLFRLGSGEVIKGWD 180 (226)
T ss_pred cccccCccceecCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeeccc-----CCCCccccccCCCCCCchHH
Confidence 3444444447889999999999999999 9999999999999998 999999999 467999 9999999999999
Q ss_pred hhcCCCCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 94 EGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 94 ~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
.+|.||++|.+++|+|||++|||..+. +.||||++|+|||+|+.+
T Consensus 181 ~gv~GMkvGGkRrviIPp~lgYg~~g~-----~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 181 VGVEGMKVGGKRRVIIPPELGYGKKGV-----PEIPPNSTLVFDVELLSV 225 (226)
T ss_pred HhhhhhccCCeeEEEeCccccccccCc-----CcCCCCCcEEEEEEEEec
Confidence 999999999999999999999999998 589999999999999986
No 12
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.86 E-value=3e-21 Score=175.49 Aligned_cols=111 Identities=19% Similarity=0.326 Sum_probs=101.3
Q ss_pred cccCCCCeEEEEEec--CCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 24 MKIVPGSLMKAVMRP--GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 24 ~~~~~~g~~~~~~~~--G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
...+++|++|.+++. |+|.. |+.||.|.+||++++.||++|++++. ..|+.|.+|.+++++||+++|.+|++
T Consensus 64 ~~~t~sGl~Y~v~~~~~g~g~~-p~~gd~V~v~Y~~~~~dG~v~~ss~~-----~~P~~f~vg~~~vi~Gl~e~L~~Mk~ 137 (177)
T TIGR03516 64 YETSQNGFWYYYNQKDTGEGTT-PEFGDLVTFEYDIRALDGDVIYSEEE-----LGPQTYKVDQQDLFSGLRDGLKLMKE 137 (177)
T ss_pred ceECCCccEEEEEEecCCCCCc-CCCCCEEEEEEEEEeCCCCEEEeCCC-----CCCEEEEeCCcchhHHHHHHHcCCCC
Confidence 366899999999987 55555 89999999999999999999999985 34999999999999999999999999
Q ss_pred CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (554)
||+++|+|||++|||..|.+ ..||||++|+|+|+|++|.
T Consensus 138 Ge~~~~~iP~~~AYG~~g~~----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 138 GETATFLFPSHKAYGYYGDQ----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CCEEEEEECHHHcCCCCCCC----CCcCcCCcEEEEEEEEEec
Confidence 99999999999999998864 6799999999999999985
No 13
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=4.3e-20 Score=178.39 Aligned_cols=114 Identities=25% Similarity=0.508 Sum_probs=104.6
Q ss_pred ccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCC
Q 008780 21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100 (554)
Q Consensus 21 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~ 100 (554)
+.+.+.+++|++|+|+++|+|.. |+.||.|.+||++++.||++|++++. ++.|+.|.++ ++++||+++|.+|+
T Consensus 138 ~~gv~~t~sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l~--~vipG~~EaL~~Mk 210 (269)
T PRK10902 138 EKGVKTTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRLD--GVIPGWTEGLKNIK 210 (269)
T ss_pred CCCcEECCCccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeecccc----CCCceEEecC--CcchHHHHHHhcCC
Confidence 34567789999999999999997 89999999999999999999999987 6789999884 69999999999999
Q ss_pred CCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecc
Q 008780 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146 (554)
Q Consensus 101 ~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~ 146 (554)
+|+++.|+||++++||..+. ++||||++|+|+|+|+++...
T Consensus 211 ~Gek~~l~IP~~laYG~~g~-----~gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 211 KGGKIKLVIPPELAYGKAGV-----PGIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred CCcEEEEEECchhhCCCCCC-----CCCCCCCcEEEEEEEEEeccC
Confidence 99999999999999999875 469999999999999999754
No 14
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-19 Score=166.29 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=102.1
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeC-CCcEEEecCCCccEE-EEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG-DGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~-~g~~~~s~~~~~p~~-~~~g~~~~~~gle~~l~~m~~Ge~~~~~v 228 (554)
...|+++.-++-|.| +.+..|+.|.++|.+++. +|.+|+++..+.|+. |.+|.+++|+||+.++.+|++|.+++|+|
T Consensus 118 l~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviI 196 (226)
T KOG0552|consen 118 LPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVII 196 (226)
T ss_pred cCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEe
Confidence 457999999999999 899999999999999998 999999999999999 99999999999999999999999999999
Q ss_pred eCCccCCCCCCCCCCCcceEEEEEeeeee
Q 008780 229 TSQYLTPSPLMPVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 229 ~~~~~~g~~~~~~ip~~~~l~~~v~l~~~ 257 (554)
||++|||..+.+.||+|++|+|+|+|+++
T Consensus 197 Pp~lgYg~~g~~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 197 PPELGYGKKGVPEIPPNSTLVFDVELLSV 225 (226)
T ss_pred CccccccccCcCcCCCCCcEEEEEEEEec
Confidence 99999999999999999999999999986
No 15
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.7e-19 Score=169.72 Aligned_cols=122 Identities=27% Similarity=0.474 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (554)
+....|+.+|.+||.+++.++|.+|+.+|.+||. ++|.+ +..|+|+|.+|.++|+|..|++.|+.
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTN-----------AVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCc-----------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6788999999999999999999999999999999 99998 78999999999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 473 al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
||.+||++.|+|.|+|.||..+|+|++|++.|++||+++|+| ...+..|..++++++
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLN 197 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999 578888887777665
No 16
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.80 E-value=4.1e-19 Score=161.52 Aligned_cols=107 Identities=20% Similarity=0.164 Sum_probs=97.9
Q ss_pred CCCCeEEEEEec--CCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780 151 DDFGVVKKVINE--GQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (554)
Q Consensus 151 ~d~gl~k~i~~~--g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v 228 (554)
...|+.+.+++. |.| ..|+.||.|++||++++.||++|+|+....|+.|.+|.++++|||+++|.+|++||+++|+|
T Consensus 67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i 145 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF 145 (177)
T ss_pred CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence 446899998876 555 78999999999999999999999999877899999999999999999999999999999999
Q ss_pred eCCccCCCCC-CCCCCCcceEEEEEeeeeee
Q 008780 229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLI 258 (554)
Q Consensus 229 ~~~~~~g~~~-~~~ip~~~~l~~~v~l~~~~ 258 (554)
||++|||..+ ...||+|++|+|+|+|+++.
T Consensus 146 P~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 146 PSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999864 46799999999999999984
No 17
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.78 E-value=1.8e-18 Score=142.36 Aligned_cols=94 Identities=36% Similarity=0.639 Sum_probs=86.5
Q ss_pred CCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCC
Q 008780 41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120 (554)
Q Consensus 41 g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~ 120 (554)
|..+|+.||.|.+||++++.+|++|++++. .+.|+.|.+|.+++++||+.+|.+|++||++.|.||++++||..+.
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~ 76 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ----EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL 76 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT----TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee----cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence 455689999999999999999999999976 6789999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCceEEEEEEE
Q 008780 121 PVAAPSTFPKDEELHFEIEMI 141 (554)
Q Consensus 121 ~~~~~~~ip~~~~l~~~v~l~ 141 (554)
. +..||++++|+|+|+|+
T Consensus 77 ~---~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 77 E---PPKIPPNSTLVFEIELL 94 (94)
T ss_dssp C---TTTBTTTSEEEEEEEEE
T ss_pred C---CCCcCCCCeEEEEEEEC
Confidence 3 14699999999999986
No 18
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.78 E-value=2.1e-18 Score=160.83 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=97.3
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (554)
Q Consensus 150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v 228 (554)
..+.|+.++++++|.| ..|+.+|.|.|||++++.||++|+|+. ++.|+.|.+| +++|||+++|.+|++|+++.|+|
T Consensus 99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 3567999999999999 789999999999999999999999986 5789999996 79999999999999999999999
Q ss_pred eCCccCCCCC-CCCCCCcceEEEEEeeeee
Q 008780 229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 229 ~~~~~~g~~~-~~~ip~~~~l~~~v~l~~~ 257 (554)
||+++||..+ ++.||++++|+|+|+|+++
T Consensus 176 P~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999964 4579999999999999987
No 19
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=9.3e-18 Score=149.19 Aligned_cols=128 Identities=34% Similarity=0.582 Sum_probs=115.6
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (554)
+..+..+..++..||.+|+.|+|..|...|..||+. .|.. ..+.+..||.|+|.|++|++.|+.|+..|.
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~----cp~~------~~e~rsIly~Nraaa~iKl~k~e~aI~dcs 158 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALES----CPST------STEERSILYSNRAAALIKLRKWESAIEDCS 158 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHh----Cccc------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Confidence 445788999999999999999999999999999994 4433 134567899999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 472 ~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
+||+++|.+.+|+.|||.+|..+..|++|+.+|++.++++|.+ ..++..+.+|...+.
T Consensus 159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~-~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR-REAREAIARLPPKIN 216 (271)
T ss_pred hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999999999999999998 578888888877776
No 20
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.74 E-value=2.7e-17 Score=135.37 Aligned_cols=91 Identities=31% Similarity=0.439 Sum_probs=83.9
Q ss_pred CcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCC--CC
Q 008780 165 GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PV 241 (554)
Q Consensus 165 g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~--~~ 241 (554)
|.+.|+.||.|++||++++.+|++++++. .+.|++|.+|.++++|||+++|.+|++||++.|+|||+++||+.+. ..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 34679999999999999999999999984 6889999999999999999999999999999999999999998654 45
Q ss_pred CCCcceEEEEEeee
Q 008780 242 VEGCEEVHFEVELV 255 (554)
Q Consensus 242 ip~~~~l~~~v~l~ 255 (554)
||++++|+|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999986
No 21
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.72 E-value=5.9e-17 Score=156.65 Aligned_cols=105 Identities=24% Similarity=0.345 Sum_probs=98.3
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~ 229 (554)
.+.|+.++++++|.| ..|+.||.|+|||.+++.||++|+++. .+.|+.|.++ +++|||+++|.+|++|+++.|+||
T Consensus 144 t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~IP 220 (269)
T PRK10902 144 TSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIP 220 (269)
T ss_pred CCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEEC
Confidence 567999999999999 789999999999999999999999886 5789999885 699999999999999999999999
Q ss_pred CCccCCCCCCCCCCCcceEEEEEeeeeee
Q 008780 230 SQYLTPSPLMPVVEGCEEVHFEVELVHLI 258 (554)
Q Consensus 230 ~~~~~g~~~~~~ip~~~~l~~~v~l~~~~ 258 (554)
++++||..+.+.||++++|+|+|+|+++.
T Consensus 221 ~~laYG~~g~~gIppns~LvfeVeLl~V~ 249 (269)
T PRK10902 221 PELAYGKAGVPGIPANSTLVFDVELLDVK 249 (269)
T ss_pred chhhCCCCCCCCCCCCCcEEEEEEEEEec
Confidence 99999998778899999999999999995
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.4e-15 Score=151.28 Aligned_cols=118 Identities=29% Similarity=0.541 Sum_probs=109.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+...++.||.+|+.|+|..|+.+|.+||. .+|.| ..+|.|+|.||.+++++..|+.+|+.++++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk----r~P~D-----------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK----RDPED-----------ARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCch-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 377789999999999999999999999999 88988 899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
+|++.++|+|.|.|+..+.+|+.|++.|++++++||++ .++...+.++...+.
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~a~~ 474 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVEAQR 474 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999997 566666666666543
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.9e-15 Score=147.41 Aligned_cols=108 Identities=31% Similarity=0.541 Sum_probs=101.4
Q ss_pred CCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (554)
Q Consensus 388 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (554)
.++.+++++.|..+|.+||.+|+.++|++||.+|.+||+ +.|+. ...|.|+|.||..+|+|++.+
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~----l~p~e-----------piFYsNraAcY~~lgd~~~Vi 169 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE----LCPDE-----------PIFYSNRAACYESLGDWEKVI 169 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh----cCCCC-----------chhhhhHHHHHHHHhhHHHHH
Confidence 467889999999999999999999999999999999999 88876 679999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
++|.++|+++|+++|||+||+.||..+|++.+|+.++.-..-+
T Consensus 170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~ 212 (606)
T KOG0547|consen 170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL 212 (606)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence 9999999999999999999999999999999999998755444
No 24
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.61 E-value=1.2e-14 Score=129.89 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=75.0
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||+|.+||++++.||++|+||+. .+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||..
T Consensus 5 i~~~~~V~v~Y~~~~~dG~v~dst~~----~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~------ 74 (156)
T PRK15095 5 VQSNSAVLVHFTLKLDDGSTAESTRN----NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP------ 74 (156)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEECCC----CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence 68999999999999999999999986 57899999999999999999999999999999999999999976
Q ss_pred CCCCCCCCceEEEEEEEee
Q 008780 125 PSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~ 143 (554)
+..++..|....+
T Consensus 75 ------d~~~v~~vp~~~f 87 (156)
T PRK15095 75 ------SPDLIQYFSRRDF 87 (156)
T ss_pred ------ChHHEEEecHHHC
Confidence 4577777765555
No 25
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.60 E-value=3e-15 Score=143.32 Aligned_cols=121 Identities=26% Similarity=0.432 Sum_probs=111.6
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (554)
.++.++.+..++++||.||++|+|++|+.||.+++. +.|.+ ...+.|+|.+|+++++|..|...|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~N-----------pV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA----VYPHN-----------PVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc----cCCCC-----------ccchhhHHHHHHHHHHHHHHHHhH
Confidence 567788888999999999999999999999999999 88887 678999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
..|+.+|..+.|||-|||.|...||...+|.++++.+|+|+|++ .+++..++.+..
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~-~ELkK~~a~i~S 210 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN-IELKKSLARINS 210 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc-HHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999997 566666655544
No 26
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.3e-15 Score=143.14 Aligned_cols=242 Identities=26% Similarity=0.371 Sum_probs=173.9
Q ss_pred eEEEEEEEEEecCCCcEEEeccCCC---CCCCeEEEcCCCCchHHHHHH--HhcCCcCcE----EEEEeC--CCCccccC
Q 008780 291 LLCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMC--VRLMLPGEI----ALVTCP--PDYAYDKF 359 (554)
Q Consensus 291 ~V~v~y~g~~~~~~g~~~~~t~~~~---~~~~~~f~lG~~~v~~g~~~~--l~~M~~GE~----~~~~i~--~~~~yg~~ 359 (554)
++++...| +|++|+.||.|+... +|+.++| |+||.|.+.+ |...+..+. +.|.|. .++.-+..
T Consensus 110 lLSMAN~G--pNTNgSQFFITT~p~PHLdGkHVVF----GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 110 LLSMANRG--PNTNGSQFFITTVPTPHLDGKHVVF----GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSK 183 (372)
T ss_pred hhhhhcCC--CCCCCcceEEeCCCCCCcCCceeEE----eeEeechhHHHHHhccccccCCCCccceEeccccccccccc
Confidence 56677777 778899999998764 5788888 6788887754 444545443 222221 11111100
Q ss_pred -CCCCCC--CCCCeEEEEEEEccccc-CCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC
Q 008780 360 -LRPANV--PEGAHIQWEIELLGFEK-PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435 (554)
Q Consensus 360 -g~~~~i--p~~~~l~~~ieL~~~~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~ 435 (554)
.....+ +....-.++ ++.. ...+...+....+..++..++.|+..|++++|..|...|.++++++.. .+.+
T Consensus 184 ~~~~~~a~~~~~sgd~~~----d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~-~s~~ 258 (372)
T KOG0546|consen 184 VKEDAGASEPDETGDSYE----DYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSE-QSRD 258 (372)
T ss_pred ccccccCCCCCCCCCccc----ccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcc-cccc
Confidence 000001 111111111 0110 111223345667788899999999999999999999999999999875 2322
Q ss_pred hh-H----HHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 436 DE-E----GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 436 ~e-e----~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
.+ + ...+..++..++.|++.|-++++.|..|+..|..+++.++...++|||++++++.+.++++|+++++.|...
T Consensus 259 ~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 259 REKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred cccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 11 1 233567778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780 511 DKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLT 546 (554)
Q Consensus 511 ~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~ 546 (554)
.|++ ..+.+++...+++.. +.++++ +.+.+||+
T Consensus 339 ~p~d-~~i~~~~~~~~~~~~~~~~~~~--~~~~k~~s 372 (372)
T KOG0546|consen 339 APND-KAIEEELENVRQKKKQYNRKQK--KALSKMFS 372 (372)
T ss_pred Ccch-HHHHHHHHHhhhHHHHHHHHHH--HHHHhhcC
Confidence 9997 778888888877777 667777 88999884
No 27
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.54 E-value=1.3e-13 Score=141.39 Aligned_cols=117 Identities=21% Similarity=0.378 Sum_probs=109.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..++.+|+.+|..++|..|+.+|++||+ +.|.+ ..+++++|.||+++++|++|+.++++|+.++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~-----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAID----LDPNN-----------AELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34578899999999999999999999999 88887 6799999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|.++.+|+++|.+|+.+|+|++|+..|+++++++|++ ..+...+..+..++.
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD-SRFTKLIKECDEKIA 118 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 678888888877775
No 28
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.7e-14 Score=138.57 Aligned_cols=127 Identities=27% Similarity=0.415 Sum_probs=114.2
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (554)
..-.++..+.+++.||.+|+.|+|..|-++|..||. ++|.+ .+..+.||.|+|.+..++|+..+|+..|
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n-------~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN-------KKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc-------cchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 445577888999999999999999999999999999 99987 3456889999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
++|+.+|+...|||.++|+||+.+++|++|.++|++|++++.+ ..+++.|.+++..++
T Consensus 311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALK 368 (486)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 456777776666665
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=6.5e-13 Score=147.05 Aligned_cols=135 Identities=27% Similarity=0.393 Sum_probs=118.0
Q ss_pred CCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHh
Q 008780 364 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV 443 (554)
Q Consensus 364 ~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~ 443 (554)
.+|+...+...+++..++. ...+.++.+++...+..++++|+.+|+.|+|++|+..|++|+. +.|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~----~~p~--------- 159 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE----CKPD--------- 159 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc---------
Confidence 3556666666666655444 3457789999999999999999999999999999999999999 7774
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
...|.|+|.||.++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|.+++.+++.+.
T Consensus 160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999999999999999999999999999999999988877653
No 30
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.49 E-value=4e-13 Score=123.02 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++++++|+|+|++++.+|++|++|+. ..|+.|.+|.++++++|+++|.+|.+|++..|.|||+.|||..
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~------ 71 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY------ 71 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence 57899999999999999999999983 5799999999999999999999999999999999999999976
Q ss_pred CCCCCCCCceEEEEEEEee
Q 008780 125 PSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~ 143 (554)
+..++..|..-.+
T Consensus 72 ------d~~lV~~vpr~~F 84 (196)
T PRK10737 72 ------DENLVQRVPKDVF 84 (196)
T ss_pred ------ChHHEEEecHHHC
Confidence 4567776655544
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.49 E-value=8.5e-13 Score=117.47 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=100.1
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...|..++..|+|++|+..|++++. ++|.+ ..+++++|.++.++|+|++|+..|.++++++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM----AQPWS-----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 55789999999999999999999999 89988 7899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
+.+++++|.++..+|++++|+..|++|++++|++ ......+...
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-~~~~~~~~~~ 135 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-ASWSEIRQNA 135 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence 9999999999999999999999999999999998 4455444433
No 32
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.9e-13 Score=128.80 Aligned_cols=104 Identities=30% Similarity=0.442 Sum_probs=95.1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.|+.+++.||.+|+.++|..|+.+|.++|. ....| ..+.+.+|+|+|+|++-+|+|..|+..|.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk----~kc~D-------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK----KKCAD-------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh----hcCCC-------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999 55555 3456889999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+|.+.||++|-|+|++.|.+|.+|..+.+..+.++
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999888888877776654
No 33
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.1e-12 Score=116.23 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=73.1
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
.++||.|+++|++++.||++||+|.. ...|+.|.+|.+++++||++||.+|.+|++..|.|||+.|||..
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~------ 72 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDE----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY------ 72 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccc----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC------
Confidence 67899999999999999999999984 46799999999999999999999999999999999999999976
Q ss_pred CCCCCCCCceEEEEEEEee
Q 008780 125 PSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~ 143 (554)
+..++-.|.+-.+
T Consensus 73 ------~~~lvq~vp~~~F 85 (174)
T COG1047 73 ------DPDLVQRVPRDEF 85 (174)
T ss_pred ------ChHHeEEecHHHh
Confidence 4466555544444
No 34
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.47 E-value=4.3e-13 Score=119.78 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=67.7
Q ss_pred CCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCC
Q 008780 168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM 239 (554)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~ 239 (554)
.++.|+.|++||++++.||++|+|+.. +.|+.|.+|.++++|||+++|.+|++|+++.|.|||+++||..++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~ 76 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP 76 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 478899999999999999999999874 799999999999999999999999999999999999999998654
No 35
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.1e-13 Score=136.36 Aligned_cols=113 Identities=27% Similarity=0.456 Sum_probs=106.1
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..++++||.+|..|+|+.|+.+|..|+. ++|.+ ..+|.|++.||.++++|.+|+....+..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~----l~p~n-----------hvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIM----LSPTN-----------HVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHc----cCCCc-----------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999 89987 8899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
|.++|+|.|+|.++..+|+|++|+..|.+.|+.+|+| ..+..-|....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n-~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSN-KQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCch-HHHHHhHHHhh
Confidence 9999999999999999999999999999999999998 56666666665
No 36
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.42 E-value=1.4e-12 Score=119.52 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=68.1
Q ss_pred CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCC
Q 008780 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240 (554)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~ 240 (554)
++.++.|+++|++++.||++++++....|+.|.+|.++++|+||++|.+|++|++.+|.|+|+.|||...+.
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~ 74 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN 74 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 578899999999999999999999888999999999999999999999999999999999999999987553
No 37
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.6e-12 Score=113.80 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=69.3
Q ss_pred CCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCC
Q 008780 168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPV 241 (554)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ 241 (554)
.+..|+.|+++|++++.||+++++|.. ..|+.|.+|.++++||||++|.+|.+|++.++.|||+.|||.+++..
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~l 76 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDL 76 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHH
Confidence 367899999999999999999999987 89999999999999999999999999999999999999999976643
No 38
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.7e-12 Score=119.09 Aligned_cols=119 Identities=26% Similarity=0.370 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+++.||.+|...+|..|+.+|.+||. ++|.. +..+.|+|.||+++++|+.+...|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~----~nP~~-----------~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC----INPTV-----------ASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHh----cCCCc-----------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 3578999999999999999999999999999 88887 78899999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD----KSSEPDATAALSKLKKQR 529 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~----P~~~~~~~~~l~~l~~~~ 529 (554)
++|+.+|++|.+|++++....|++|+..+++|..+- ++...++..+|...+.+.
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKR 130 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCc
Confidence 999999999999999999999999999999997762 222346777777766543
No 39
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.36 E-value=2.7e-11 Score=106.39 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=96.5
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
+..+.+...|..++..|++++|...|+-.+. ++|.+ ...|+|||.|+..+|+|.+|+..|.+|+.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~-----------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWS-----------FDYWFRLGECCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3466788999999999999999999999999 88888 78999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
++|+++.++++.|.|++.+|+.+.|++.|+.|+.+--
T Consensus 98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999863
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=2.7e-11 Score=106.56 Aligned_cols=115 Identities=19% Similarity=0.371 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+......|..++..+++.+|+..|++++. ..|.+ ..++.++|.|+.+++++++|+..+++++..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYN-----------SRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999 78877 679999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+|.++..++.+|.++..+|++++|+..|+++++++|++ .........+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~ 130 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN-PEYSELKERAEA 130 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 444555554443
No 41
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.28 E-value=1.2e-11 Score=126.92 Aligned_cols=124 Identities=22% Similarity=0.235 Sum_probs=61.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH--------------------HH---HHhhhHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--------------------GK---VFVGKRNLLHLNVA 454 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee--------------------~~---~~~~~~~~~~~nla 454 (554)
+.++.+.||.+-..+.|++|+.+|.+|+. +.|....- .+ .++.-...+|+|+|
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~----lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nla 327 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALN----LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLA 327 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHh----cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 44555666666666666666666666666 55544100 00 00000133455555
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
.++...|+..+|.++|++||.+.|+++.+++++|.++.+.+.+++|...|.+|++..|.- .++..-|..+.
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~ 398 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIY 398 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555543 33333344333
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=1.9e-10 Score=115.41 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=99.8
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+.++|..+...|++.+|+..|++|++ ++|.+ ..+|+++|.++..+|+|++|+..++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467799999999999999999999999999 89987 78999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++|++..+++++|.++...|++++|+.+|+++++++|++
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999998
No 43
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.25 E-value=1.1e-11 Score=125.22 Aligned_cols=118 Identities=30% Similarity=0.463 Sum_probs=111.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.|..++++++.+|+.+.|+.|+..|.+||+ ++|+. +..+.|+|.++++.++|..|+..+.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnc-----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIE----LDPNC-----------AIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcc-----------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 467889999999999999999999999999 88887 778999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
+|...|+|+|+|.+++.+++|.+|+.+|++...+.|++ +.+.+.+.++.....
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND-PDATRKIDECNKIVS 120 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 788888888887776
No 44
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.24 E-value=1.3e-10 Score=109.18 Aligned_cols=114 Identities=14% Similarity=0.253 Sum_probs=100.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHH-HHccC--HHHHHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL-LKLGE--CRKSIEACNKV 473 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~-~kl~~--~~~A~~~~~~a 473 (554)
.+..+...|..+...|+++.|+..|++|++ +.|.+ ..++.++|.|+ ...|+ +.+|...++++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~-----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGEN-----------AELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 466788999999999999999999999999 89988 78999999985 67787 59999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
++.+|+++.+++.+|.+++.+|+|++|+..|+++++++|.+. .-...+..+.
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~-~r~~~i~~i~ 188 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV-NRTQLVESIN 188 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHHHHHHHH
Confidence 999999999999999999999999999999999999999873 3333334433
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=1.2e-10 Score=119.78 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=105.9
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
.++.+.||++-..|+..+|..+|.+||. +.|.. +...+|||..|..++.+++|...|.++|+..|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~----l~p~h-----------adam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALR----LCPNH-----------ADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 4556777777777777777777777777 56655 67899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
+.+.++.++|.+|.+.|++++|+.+|+.|+++.|.- .++..-+....+.+..-..+. .+|.+...-.|
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~~A~--q~y~rAI~~nP 453 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-ADALSNMGNTYKEMGDVSAAI--QCYTRAIQINP 453 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-HHHHHhcchHHHHhhhHHHHH--HHHHHHHhcCc
Confidence 999999999999999999999999999999999986 445544555545554333343 67877655443
No 46
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.18 E-value=8.7e-11 Score=90.37 Aligned_cols=66 Identities=32% Similarity=0.605 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P 512 (554)
+..+.++|.+++.+++|++|+.+++++++++|+++.+|+++|.++..++ ++++|+.+|++|++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5689999999999999999999999999999999999999999999999 79999999999999998
No 47
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.17 E-value=5.4e-10 Score=123.85 Aligned_cols=103 Identities=25% Similarity=0.324 Sum_probs=72.8
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+..+|..++..|++++|+..|++++. ++|.. ...++++|.++..+++|++|+..+++++++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 455677888888899999999999999998 77765 445666666666666666666666666666
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+|+++.+|+++|.+++.+|++++|+.+|+++++++|++
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 66666666666666666666666666666666666655
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=2.4e-10 Score=110.15 Aligned_cols=152 Identities=20% Similarity=0.317 Sum_probs=125.9
Q ss_pred ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (554)
Q Consensus 390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (554)
++-..+.......+.+......++|.++++.+++.++ ..|... ..+...+--++.|+..-+++-+|+..
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk----~ep~~~-------~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK----NEPEET-------MIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCCccc-------ceeeeeeheeeecccccCCHHHHHHH
Confidence 4566777788888889999999999999999999999 666531 12233455678999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH---------------HHH
Q 008780 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQV---------------KLK 534 (554)
Q Consensus 470 ~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~---------------~~~ 534 (554)
|.++|.++|+++.+|..|+.||+.-..|+.|+.+|++|++++++| ..++..+...++...+ ..+
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsK 408 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRAREGLERAKRLKKQSGKRDYYKILGVKRNASK 408 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHHhccchHHHHhhhcccccH
Confidence 999999999999999999999999999999999999999999998 6788888777665541 124
Q ss_pred HHHHHHHHhhccc-cccccC
Q 008780 535 VRLENSLKGCLTR-SLGKFL 553 (554)
Q Consensus 535 ~~~~~~y~~~f~~-~~~~~~ 553 (554)
+.+-++|+||-.+ +|++|.
T Consensus 409 qEI~KAYRKlAqkWHPDNFq 428 (504)
T KOG0624|consen 409 QEITKAYRKLAQKWHPDNFQ 428 (504)
T ss_pred HHHHHHHHHHHHhcCCcccc
Confidence 5566889988776 788875
No 49
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=1.9e-09 Score=92.06 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=95.7
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
..+...|..+++.|+|.+|+..|.+++. ..|.+. ....+++++|.++.+.++|++|+..+++++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999998 555441 1145789999999999999999999999999998
Q ss_pred CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008780 479 AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521 (554)
Q Consensus 479 ~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~ 521 (554)
++ +.+++.+|.++..++++++|+..|+++++..|++ ..+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~ 115 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS-SAAKLA 115 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC-hhHHHH
Confidence 85 6789999999999999999999999999999998 444433
No 50
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.07 E-value=3.8e-09 Score=97.11 Aligned_cols=110 Identities=21% Similarity=0.344 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (554)
.....+..+...|..++..|++++|+.+|++++. ..+...+ ...++.++|.++.++|+|++|+.++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALK----LEEDPND--------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----Hhhccch--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556788899999999999999999999999998 4443211 146899999999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 008780 473 VLDANPAHVKGLYRRGMAYMALGE--------------FEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 473 al~~~p~~~ka~~~~g~a~~~l~~--------------~~~A~~~~~~al~l~P~~ 514 (554)
++.++|.+..+++.+|.++..+++ +++|++.+++++.++|++
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999988 678888888888889886
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=2.6e-09 Score=103.15 Aligned_cols=115 Identities=23% Similarity=0.413 Sum_probs=104.1
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..++.+.+.|+.++.++++..|+..|..|++ .+|.+ ..+++.+|.+|+.+|+-.-|+..+.++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~-----------Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNN-----------YQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchh-----------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 4577889999999999999999999999999 89987 78899999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+.|+..-|...||.+++.+|++++|.++|+++|..+|++. .......++.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~-~~~eaqskl~ 150 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG-LVLEAQSKLA 150 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc-hhHHHHHHHH
Confidence 9999999999999999999999999999999999999873 3333334443
No 52
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.03 E-value=6e-09 Score=119.06 Aligned_cols=128 Identities=10% Similarity=0.081 Sum_probs=94.5
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
..+...|..+.+.|++++|+..|++++. +.|.+ ..+++|+|.++..+|++++|+..+.++++++|
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~-----------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALE----LEPNN-----------SNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3456667777777777777777777777 77776 56888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008780 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGC 544 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~ 544 (554)
+++.+++++|.++..+|++++|+..|++|++++|++ ..+......+..+...-+... +.|+..
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~~~~~a~--~~~~r~ 737 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRFNFRRLH--EEVGRR 737 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHHHHHHHH--HHHHHH
Confidence 888888888888888888888888888888888876 455555555544443223332 445444
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.01 E-value=6.9e-09 Score=97.44 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=105.0
Q ss_pred hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (554)
Q Consensus 410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~ 489 (554)
..++.++++..|+++++ .+|.+ ...|.++|.+|..++++++|+..++++++++|+++.+++.+|.
T Consensus 51 ~~~~~~~~i~~l~~~L~----~~P~~-----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46778899999999999 88988 7899999999999999999999999999999999999999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 490 AY-MALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 490 a~-~~l~~--~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
++ ...|+ +++|+..|+++++++|++ ..+...|..........+++. ..|++++...|
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai--~~~~~aL~l~~ 175 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAI--ELWQKVLDLNS 175 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHH--HHHHHHHhhCC
Confidence 86 67787 599999999999999998 677777777766665455555 78888876543
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=5e-09 Score=115.30 Aligned_cols=134 Identities=9% Similarity=0.088 Sum_probs=115.5
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|....+.|++++|...++.+++ +.|++ ..++.++|.++.+++++++|+..|+++|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~-----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDS-----------SEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 3467788999999999999999999999999 89988 78999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTR 547 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~ 547 (554)
.+|+++.+++.+|.++..+|+|++|++.|++++..+|++ ..+.-.+..+-+.....+.+. .+|++.+..
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~~~a~~l~~~G~~~~A~--~~~~~a~~~ 217 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYVGWAQSLTRRGALWRAR--DVLQAGLDA 217 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHH--HHHHHHHHh
Confidence 999999999999999999999999999999999988876 555555555544444445555 677777654
No 55
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.01 E-value=1.1e-09 Score=87.76 Aligned_cols=83 Identities=29% Similarity=0.514 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
+++|+.|+..|++++. ..|.+. ....++++|.||+++++|++|+..+++ +..++.+..+++.+|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~----~~~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE----LDPTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHH----HHCGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH----HCCCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 6899999999999999 555331 146788899999999999999999999 88999999999999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 008780 491 YMALGEFEEAQRDFEMM 507 (554)
Q Consensus 491 ~~~l~~~~~A~~~~~~a 507 (554)
+..+++|++|+..|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999876
No 56
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=3.3e-09 Score=94.36 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 008780 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (554)
Q Consensus 418 ~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~ 497 (554)
...|++|++ ++|. .+.++|.++..+|+|++|+.+|++++.++|.+..+|+.+|.++..+|++
T Consensus 13 ~~~~~~al~----~~p~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLS----VDPE--------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHH----cCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 456788888 6653 2567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 498 ~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
++|+..|++|+.++|++ ..+...+..+.......+.+. ..|.+.....|+.
T Consensus 75 ~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~g~~~eAi--~~~~~Al~~~p~~ 125 (144)
T PRK15359 75 TTAINFYGHALMLDASH-PEPVYQTGVCLKMMGEPGLAR--EAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCCC
Confidence 99999999999999998 667777776666555444555 6787777665543
No 57
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.00 E-value=1.3e-08 Score=93.11 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=94.4
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..++..++|++|+..|++|+. +.+... ....++.|+|.++..++++++|+..|.+++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----l~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR----LEIDPY--------DRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----ccccch--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44788889999999999999999999999998 444321 124589999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCChHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYM-------ALGEFE-------EAQRDFEMMMKVDKSSEPDATA 520 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~-------~l~~~~-------~A~~~~~~al~l~P~~~~~~~~ 520 (554)
.++|.+..++.++|.++. .+|+++ +|+..|++++.++|.+...+..
T Consensus 100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 999999999999999999 777776 5566666778889876443333
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=1.1e-09 Score=114.41 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=78.1
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCCh-------------hHHHH-Hh---------hhHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-------------EEGKV-FV---------GKRNLLHLNVA 454 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~-------------ee~~~-~~---------~~~~~~~~nla 454 (554)
.+.|...||.+--+++++.|+++|++|+. ++|... ||.+. .. .-...+|+.+|
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 56788999999999999999999999999 777541 11111 00 01123566666
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+|+|+++++.|.-++++|++++|.|.-.+...|..+.++++.++|+..|++|+.+||.|
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 667777777777777777777777666666666777777777777777777777766666
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=8.1e-09 Score=112.73 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=68.3
Q ss_pred hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (554)
Q Consensus 410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~ 489 (554)
..+++.+|+..+++|++ ++|.+ ..++..+|.++..++++++|+..++++++++|+++.+|+.+|.
T Consensus 316 ~~~~~~~A~~~~~~Al~----ldP~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 316 KQNAMIKAKEHAIKATE----LDHNN-----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred cchHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55667777777777777 77776 5667777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 490 AYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 490 a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++..+|++++|+..|++|++++|.+
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 7777777777777777777777775
No 60
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-08 Score=102.29 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=107.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+.-.|.++...++-..|+..|++|++ ++|.| ..+|+.+|.+|--|+...=|+-++++|++.
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~D-----------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRD-----------YRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchh-----------HHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 455667788888888888899999999998 88877 788999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
.|++...|..+|.||..+++.++|+++|++|+...-.+ ..+-..|.+|.++.+...++. .+|.+...
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa--~~yek~v~ 494 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAA--QYYEKYVE 494 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHH--HHHHHHHH
Confidence 99999999999999999999999999999999887654 456666777777776344443 56666554
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6.7e-09 Score=104.65 Aligned_cols=105 Identities=25% Similarity=0.346 Sum_probs=99.8
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
-..|..+.-+|..+|-.|++..|...++++|. ++|.. ..+|..+|..|+...+-.+-..++++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~-----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAF-----------NSLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh----cCccc-----------chHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 44588899999999999999999999999999 88877 6679999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+||.|+..||.||+.++-+++|++|+++|++|.+|+|+|
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 9999999999999999999999999999999999999987
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.1e-09 Score=103.91 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=115.1
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 482 (554)
-.||-+--+++.+.|+..|++||+ ++|.. ..+|.-+|.=|+.|++-..|+..|++|++++|.+-+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALk----LNp~~-----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALK----LNPKY-----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHh----cCcch-----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 468888889999999999999999 99987 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCL 545 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f 545 (554)
|||-+|++|..++-..=|+-.|++|+.+-|++ +.++..|.++..+....+.+. +.|++..
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~eAi--KCykrai 459 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPND-SRLWVALGECYEKLNRLEEAI--KCYKRAI 459 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHHHH--HHHHHHH
Confidence 99999999999999999999999999999998 789999999998887555555 7888764
No 63
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.97 E-value=7.3e-09 Score=83.18 Aligned_cols=99 Identities=32% Similarity=0.580 Sum_probs=90.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|..++..+++.+|+..++++++ ..|.+ ..++.++|.|+...+++++|+..+++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE----LDPDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 356788999999999999999999998 66665 467899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
+..+++.+|.++...++++.|...+.++++++|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999998874
No 64
>PRK15331 chaperone protein SicA; Provisional
Probab=98.97 E-value=1.5e-08 Score=89.49 Aligned_cols=102 Identities=9% Similarity=0.149 Sum_probs=93.9
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
..+.....|-.+|.+|+|++|...|+-... .++.+ ...++.||.|+..+++|++|+..|..+..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456778899999999999999999998777 77877 668899999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+++++...|+.|+|++.+++.+.|+.+|..|+. .|.+
T Consensus 101 ~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 101 LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 999999999999999999999999999999998 4554
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=98.95 E-value=1.2e-08 Score=111.27 Aligned_cols=119 Identities=10% Similarity=0.085 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 493 (554)
+++|+..|++|++ ++|.+ ..+++++|.++..+|++++|+.+++++++++|.++.+++.++.+++.
T Consensus 354 ~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 354 YIVGSLLFKQANL----LSPIS-----------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 4678888888888 88888 67899999999999999999999999999999999888888888999
Q ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 494 LGEFEEAQRDFEMMMKVD-KSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 494 l~~~~~A~~~~~~al~l~-P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+|++++|+..++++++.+ |++ ..+...+..+.......++++ ..+.++....+.
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~--~~~~~~~~~~~~ 473 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELAR--KLTKEISTQEIT 473 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHH--HHHHHhhhccch
Confidence 999999999999999886 555 556666666655544444555 567777665544
No 66
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.94 E-value=1.9e-09 Score=82.79 Aligned_cols=67 Identities=28% Similarity=0.496 Sum_probs=63.1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLD 475 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~ 475 (554)
.|..+...|..++..++|++|+..|++|++ ++|.+ ..+++|+|.||.+++ ++.+|+.+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 367889999999999999999999999999 78877 789999999999999 79999999999999
Q ss_pred hCC
Q 008780 476 ANP 478 (554)
Q Consensus 476 ~~p 478 (554)
++|
T Consensus 67 l~P 69 (69)
T PF13414_consen 67 LDP 69 (69)
T ss_dssp HST
T ss_pred cCc
Confidence 998
No 67
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=3.8e-09 Score=80.10 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=60.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4688999999999999999999999999999999999999999999999999999999999987
No 68
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-09 Score=105.82 Aligned_cols=120 Identities=28% Similarity=0.458 Sum_probs=109.5
Q ss_pred ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (554)
Q Consensus 390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (554)
..++.++.|...+-.+..++..|.++.|+..|.+|+. ++|.. ..+|.+++.++++++.+..|++.
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~----lnp~~-----------a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIE----LNPPL-----------AILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccc----cCCch-----------hhhcccccceeeeccCCchhhhh
Confidence 3578889999999999999999999999999999999 88887 78999999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 470 ~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
|..|++++|+.++.|-.+|.++..+|+|++|..+|..|++++-+ +++.+.|+.+.
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d--E~~~a~lKeV~ 225 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD--EANSATLKEVF 225 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc--HHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999864 34555555544
No 69
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.92 E-value=2.3e-08 Score=114.27 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=100.8
Q ss_pred hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (554)
Q Consensus 410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~ 489 (554)
..|++++|+..|++|+. +.|. ..++.|+|.++.++|++++|+..+.++++++|+++.+++++|.
T Consensus 588 ~~Gr~~eAl~~~~~AL~----l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 588 IPGQPELALNDLTRSLN----IAPS------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred hCCCHHHHHHHHHHHHH----hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33666666666666666 5552 4678999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780 490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 490 a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
++..+|++++|+..|++|++++|++ ..+...+..+.......+.+. ..|++.+...|+.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd~~eA~--~~l~~Al~l~P~~ 710 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDDMAATQ--HYARLVIDDIDNQ 710 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHH--HHHHHHHhcCCCC
Confidence 9999999999999999999999998 677777777766665444444 6788887766654
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.90 E-value=5.6e-08 Score=92.63 Aligned_cols=124 Identities=19% Similarity=0.350 Sum_probs=63.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH----------------H-HHH------hhhHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVF------VGKRNLLHLNVA 454 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee----------------~-~~~------~~~~~~~~~nla 454 (554)
+..+...|..++..|++++|+..|++++. ..|.+..- . +.+ ......++.+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE----HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 45555666666666666666666666665 34443100 0 000 000023455555
Q ss_pred HHHHHccCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 455 ACLLKLGECRKSIEACNKVLDAN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~--p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
.++..+|++++|+..+.+++... +.....++.+|.++...|++++|...|.++++.+|++ ..+...+..+.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~ 179 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR-PESLLELAELY 179 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-hHHHHHHHHHH
Confidence 55555666666666666555532 3344555556666666666666666666666666654 33333333333
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.89 E-value=8.5e-08 Score=91.35 Aligned_cols=117 Identities=17% Similarity=0.255 Sum_probs=90.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|..++..|++++|+..|++++. ..... .....+.++|.|+..++++.+|+..+.+++..+|.
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIE----DPLYP---------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh----ccccc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 344556666666677777777776665 21110 11457889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
+..+++.+|.++...|++++|+..+++++++.|.+ ......+..+.....
T Consensus 168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIARALG 217 (234)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998876 444444545544444
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=2.1e-08 Score=87.99 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 008780 419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498 (554)
Q Consensus 419 ~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~ 498 (554)
..|++++. .+|.+ .....++|.++.+.+++.+|+..+++++..+|.+..+++++|.++..+++++
T Consensus 4 ~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLG----LDSEQ-----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHc----CChhh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 45778888 77776 5678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780 499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 499 ~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
+|+..|++++.++|.+ ......+..+.......+++. +.|++.+...|+.
T Consensus 69 ~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~~ 118 (135)
T TIGR02552 69 EAIDAYALAAALDPDD-PRPYFHAAECLLALGEPESAL--KALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhcccc
Confidence 9999999999999998 666666666666555334443 5677666655443
No 73
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=7.6e-08 Score=93.18 Aligned_cols=113 Identities=20% Similarity=0.288 Sum_probs=98.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|+.|+..|++++. ..|.+.. ...+++++|.+|.++++|++|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~~--------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSPY--------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchh--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 466889999999999999999999999999 7776521 2357899999999999999999999999999
Q ss_pred CCCChH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780 477 NPAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (554)
Q Consensus 477 ~p~~~k---a~~~~g~a~~~l--------~~~~~A~~~~~~al~l~P~~~~~~~~~l 522 (554)
.|+++. +++.+|.++..+ +++++|+..|++++..+|++ ..+...+
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~ 155 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAK 155 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHH
Confidence 998877 799999999987 89999999999999999998 4344333
No 74
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.88 E-value=3.3e-08 Score=109.92 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=54.6
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHH----HHHHHHHHHhhCCC
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK----SIEACNKVLDANPA 479 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~----A~~~~~~al~~~p~ 479 (554)
.+..++..|++++|+..|++++. ..|.+ ..+++++|.++..+|++++ |+..|+++++++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~----~~p~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA----RGLDG-----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 35566677777777777777776 55554 3444555555555555543 45555555555555
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++.++..+|.++..+|++++|+..|+++++++|++
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55555555555555555555555555555555554
No 75
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.87 E-value=3.8e-08 Score=109.47 Aligned_cols=135 Identities=14% Similarity=0.157 Sum_probs=108.7
Q ss_pred HHHHHHhhhhhhhcCCHHH----HHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFEL----AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~----A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
+..+...|..++..|++++ |+..|++++. +.|.+ ..++.++|.++.++|++++|+..++++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDN-----------VRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4456678999999999985 8999999999 88887 678999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
++++|+++.+++.+|.++..+|++++|+..|++++..+|++ ......+..+.......+.+. ..|++.....|+
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-~~~~~~~a~al~~~G~~deA~--~~l~~al~~~P~ 384 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-SKWNRYAAAALLQAGKTSEAE--SVFEHYIQARAS 384 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHCCCHHHHH--HHHHHHHHhChh
Confidence 99999999999999999999999999999999999999986 333332233222222334444 667777666554
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=6e-08 Score=89.45 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH--------------------HHH---HhhhHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--------------------GKV---FVGKRNLLHL 451 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee--------------------~~~---~~~~~~~~~~ 451 (554)
-..+....++|-.++.+|++..|....++||+ .+|.+... .++ +..-...+++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence 34577788889999999999999999999998 77766210 000 0011123444
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~--~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|-|..+..+|+|++|...+++|++. -+.-+..|-++|.|.+..|+++.|..+|+++|+++|++
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 5555444455555555555554442 13334556666666666666666666666666666665
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.86 E-value=4.4e-08 Score=98.27 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (554)
Q Consensus 412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~ 491 (554)
...+.++..+.++|. ..+.+++ .....|+++|.+|..+|++.+|+..++++++++|+++.+|+.+|.++
T Consensus 40 ~~~e~~i~~~~~~l~----~~~~~~~-------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILA----SRDLTDE-------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHc----cccCCcH-------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456788999999886 3333321 23678999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 492 ~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
..+|++++|+..|++|++++|++ ..+...+..+.......+.+. ..|++.+...|
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~--~~~~~al~~~P 163 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQ--DDLLAFYQDDP 163 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHH--HHHHHHHHhCC
Confidence 99999999999999999999998 455555554443333233333 45555554444
No 78
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.7e-08 Score=102.15 Aligned_cols=120 Identities=16% Similarity=0.158 Sum_probs=101.1
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+.+.|...|..+.|.+|...|+.++..+....+... .-...++|||.++.|++.|.+|+.+++++|.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 3567888888888899999999888865544433321 12567999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
++.+|--.|.+|..+|+++.|+..|.+||.++|+| .-+...|+..-..
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n-~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN-IFISELLKLAIED 535 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998 5677777655443
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.83 E-value=7.3e-08 Score=88.90 Aligned_cols=140 Identities=18% Similarity=0.223 Sum_probs=110.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+.+.|..++.+|+|++|...|++|+. +|.-.+ ....+.|++.|.+++|+++.|..+++++|++
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-----~P~Y~~--------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALA-----DPAYGE--------PSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHh-----CCCCCC--------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 456677888889999999999999999988 343211 2568899999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
+|+++-+..-+++.++..|+|-.|...+++...--+.+....+-.++..++.-......++....++.|...+
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999999999999999999887776533333333333333336666676677777776543
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=8.7e-09 Score=106.12 Aligned_cols=99 Identities=26% Similarity=0.389 Sum_probs=93.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
...-.|..++-.++|++|+.+|+.||. ..|.| ..+|+.||+.+..-.+..+|+..|++||++.|.
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd-----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQ----VKPND-----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHh----cCCch-----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 344678888899999999999999999 89998 789999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
++.+.|++|.+++.+|.|++|..+|-.||.+.+.
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999765
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.78 E-value=1.7e-07 Score=91.46 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=95.7
Q ss_pred HHHHHhhhhh-hhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 399 EKIRVTGNRL-FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 399 ~~~~~~G~~~-~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
......+..+ ++.++|++|+..|++.+. ..|.+. ....+++.+|.+|+..++|++|+..+.+++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~--------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK----KYPDST--------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4455666665 567999999999999999 777652 224688999999999999999999999999988
Q ss_pred CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 478 PA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 478 p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
|+ .+.+++.+|.++..+|++++|+..|+++++..|++ ..+......|
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s-~~a~~A~~rL 260 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT-DGAKQAQKRL 260 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHH
Confidence 87 47799999999999999999999999999999997 4555444444
No 82
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.77 E-value=1.8e-07 Score=78.36 Aligned_cols=116 Identities=21% Similarity=0.313 Sum_probs=100.5
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (554)
...++....+-.+|..+-..|+.+.|++.|.+||. +.|.. .++|+|+|.++.-.++.++|++..+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~----l~P~r-----------aSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALC----LAPER-----------ASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----hcccc-----------hHhhccHHHHHHHcCChHHHHHHHH
Confidence 34577788888999999999999999999999999 77776 7899999999999999999999999
Q ss_pred HHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 472 KVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 472 ~al~~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
+|+++...- ..++..+|..|..+|+-+.|+.+|+.|-++-.. -++..|-.+
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~---FAr~QLV~l 156 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK---FAREQLVEL 156 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH---HHHHHHHhc
Confidence 999996543 458999999999999999999999999999754 345444433
No 83
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.77 E-value=1.6e-07 Score=81.36 Aligned_cols=105 Identities=23% Similarity=0.406 Sum_probs=91.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+.+.|...++.|+|..|+..++.... .-|..+ ....+.+.++.+|++.++|.+|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~----ryP~g~--------ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDT----RYPFGE--------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45677889999999999999999988776 566541 224688999999999999999999999999999
Q ss_pred CCChH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVK---GLYRRGMAYMALGE---------------FEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~k---a~~~~g~a~~~l~~---------------~~~A~~~~~~al~l~P~~ 514 (554)
|.+++ |+|++|.+++.+.. ...|..+|++.++.-|++
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 98865 89999999999987 889999999999999987
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=9.2e-08 Score=100.19 Aligned_cols=125 Identities=18% Similarity=0.279 Sum_probs=113.2
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..-.++.-.|..|.++++++.|.-+|++|++ ++|.+ ..+..-++..+.++|+.++|+..+++|+.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~n-----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSN-----------SVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc----CCccc-----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 3556788899999999999999999999999 89987 67888899999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVR 536 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~ 536 (554)
+||.|+-+.|.+|.++..+++|++|+..|+...++-|++ ..+..++.++.++....+.+.
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHH
Confidence 999999999999999999999999999999999999997 678888888888887444444
No 85
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.76 E-value=4.1e-08 Score=97.79 Aligned_cols=132 Identities=23% Similarity=0.238 Sum_probs=97.8
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
....+...|..+.+.|++++|+..|++|++ +.|.+ ..+..+++.++..+|+++++...+......
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~-----------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDD-----------PDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 345677899999999999999999999999 89988 568888999999999999999999999888
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
.|.++..+..+|.++..+|++++|+..|+++++.+|+| ..+...+..+-......+++. .++++.+.
T Consensus 210 ~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~g~~~~A~--~~~~~~~~ 276 (280)
T PF13429_consen 210 APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQAGRKDEAL--RLRRQALR 276 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT-------------------
T ss_pred CcCHHHHHHHHHHHhccccccccccccccccccccccc-ccccccccccccccccccccc--cccccccc
Confidence 89999999999999999999999999999999999998 566666666555554444444 55555543
No 86
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.74 E-value=2.3e-07 Score=96.88 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=66.7
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...+..+.+.|+|++|+..|++++. ..|.+.. .....++.++|.++.+.+++++|+..++++++.+|++
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEK----LGGDSLR------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHH----hcCCcch------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 33444445555555555555555444 2222110 0113345677777777788888888888888777777
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..+++.+|.++...|++++|+..|++++..+|.+
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 7777788888888888888888888887777765
No 87
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.74 E-value=2e-07 Score=110.64 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=93.5
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
....|..+++.|++++|+..|++++. ++|.+ ..+++++|.++..+|++++|+.+|+++++++|++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~----~~P~~-----------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQ----VDNTD-----------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34567888888888899999988888 77766 5677788888888888888888888888888887
Q ss_pred hHHHHHHHH------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 008780 481 VKGLYRRGM------------------------------------------AYMALGEFEEAQRDFEMMMKVDKSSEPDA 518 (554)
Q Consensus 481 ~ka~~~~g~------------------------------------------a~~~l~~~~~A~~~~~~al~l~P~~~~~~ 518 (554)
..++..++. ++...|++++|+..|+++++++|++ ..+
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~ 497 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWL 497 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHH
Confidence 776654443 3445688888888888888888887 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 519 TAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 519 ~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
...+..+.......+++. ..|++++...|
T Consensus 498 ~~~LA~~~~~~G~~~~A~--~~l~~al~~~P 526 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQAD--ALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHcCCHHHHH--HHHHHHHHcCC
Confidence 555555544444333333 56666655443
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=2.1e-07 Score=102.62 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=102.7
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.+.+......+..+++.+++++|+..+++++. ..|++ ...++++|.|+.++|+|++|+..|++++
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-----------~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-----------AREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34567788999999999999999999999999 89988 7899999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
..+|++++++..+|.+++.+|+.++|...|++|+.+...-.....+.+.++.
T Consensus 182 ~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (694)
T PRK15179 182 RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN 233 (694)
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986554223333344433
No 89
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2.3e-08 Score=90.99 Aligned_cols=132 Identities=21% Similarity=0.242 Sum_probs=114.5
Q ss_pred CCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhh
Q 008780 365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG 444 (554)
Q Consensus 365 ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~ 444 (554)
+|.+.++.-+|.+..+.+--....++.++ +|..+.++|+.+=.-|-+..|..-|.+++. +.|.-
T Consensus 35 ~~~qp~lqqEV~iarlsqlL~~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m--------- 98 (297)
T COG4785 35 VPLQPTLQQEVILARMSQILASRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALA----IRPDM--------- 98 (297)
T ss_pred ccCCccHHHHHHHHHHHHHHHhccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCc---------
Confidence 45555566666666555533334456554 488899999999999999999999999999 88886
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..+++-+|.-+...++|+.|.+.++.++++||.+--|+.+||.+++--|+|..|.+++.+-.+-||++
T Consensus 99 --~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 99 --PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred --HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 77999999999999999999999999999999999999999999999999999999999999999987
No 90
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.73 E-value=6.5e-08 Score=75.08 Aligned_cols=68 Identities=24% Similarity=0.414 Sum_probs=61.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (554)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l 522 (554)
...|++.++|.+|+..+++++.++|+++.+++.+|.++..+|+|.+|+.+|+++++++|++ ..+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999987 4444433
No 91
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=3.5e-07 Score=92.03 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=96.0
Q ss_pred HHHHHHHhhhhhhhcC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH--HHHHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--RKSIEACNKV 473 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~--~~A~~~~~~a 473 (554)
....+..+|..+...+ ++.+|+..+.+++. .+|.+ ..++++++.++.++++. .+++.+++++
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npkn-----------yqaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKN-----------YQIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcc-----------hHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 3456667777777777 57899999999998 78877 67899999999999874 7889999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
|+++|.|..||..|+.++..+++|++|++++.+++++||.|. .++.....+
T Consensus 135 l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-sAW~~R~~v 185 (320)
T PLN02789 135 LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN-SAWNQRYFV 185 (320)
T ss_pred HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch-hHHHHHHHH
Confidence 999999999999999999999999999999999999999984 455544433
No 92
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.72 E-value=1.8e-07 Score=110.98 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=49.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+++.++++.+++++|+..++++++++|+++.+++.+|.++...|++++|++.|+++++++|++ ..+...+..+.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l~ 429 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 445566666667777777777777777777777777777777777777777777777777766 33444444443
No 93
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.72 E-value=3.3e-07 Score=95.63 Aligned_cols=100 Identities=20% Similarity=0.218 Sum_probs=69.3
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|..+++.+++++|+..|+++++ ..|.+ ..+++.+|.++.++|++++|+..+++++..+|.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALA----ADPQC-----------VRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh----HCcCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 455677777888888888888888887 55554 345666677777777777777777777766665
Q ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 480 H-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 480 ~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+ ..++..++.+|...|++++|+..++++++++|++
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 5 3455666677777777777777777777766654
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=3.4e-07 Score=86.24 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=103.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+..+|..+++.|+|..|+..+++|.. +.|.| ..+|+.+|.||.++|+++.|...+.+++++.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d-----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~ 164 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTD-----------WEAWNLLGAALDQLGRFDEARRAYRQALELA 164 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCC-----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence 34455699999999999999999999999 99998 7899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
|+++..+-++|..++-.|+++.|...+..+....+.+ ..+..-|..+....
T Consensus 165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~ 215 (257)
T COG5010 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQ 215 (257)
T ss_pred cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999887766 55666665554433
No 95
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=9.6e-08 Score=91.57 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
-+-+-|.-+++.++|.+|+..|.+||+++|.|+-.|.+||.||..||+|+.|+++.++|+.+||+. ..++-.|..+...
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~ 161 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHc
Confidence 344567778899999999999999999999999999999999999999999999999999999986 5566666666666
Q ss_pred HHHHHHHHHHHHHHhhcccccc
Q 008780 529 RQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 529 ~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+...+.+. ..|+|.+.-.|.
T Consensus 162 ~gk~~~A~--~aykKaLeldP~ 181 (304)
T KOG0553|consen 162 LGKYEEAI--EAYKKALELDPD 181 (304)
T ss_pred cCcHHHHH--HHHHhhhccCCC
Confidence 65444444 568888776554
No 96
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.70 E-value=2.8e-07 Score=104.55 Aligned_cols=112 Identities=11% Similarity=0.175 Sum_probs=100.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..+.+.|++.+|+..|++++. +.|.+ ..++.+++.++...+++.+|+..++++++.+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44578889999999999999999999999 88887 5678899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
|+++. ++.+|.++...|++++|+..|+++++++|++ ..+...+..+.
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l 160 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-QQYPTEYVQAL 160 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 99999 9999999999999999999999999999998 55555555443
No 97
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=3.3e-07 Score=92.27 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=104.8
Q ss_pred hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCChHHHHH
Q 008780 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYR 486 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka~~~ 486 (554)
+...+++.+|+..+.++|. ++|.+ ..++++++.|+.+++ ++.+|+.+++++++.+|++..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~----lnP~~-----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIR----LNPGN-----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 4567789999999999999 89988 789999999999998 6899999999999999999999999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780 487 RGMAYMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 487 ~g~a~~~l~~~--~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
|+.++..+++. ++++..++++++++|.| -.++.....+-.....-+.+- ..+.+++...+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN-y~AW~~R~w~l~~l~~~~eeL--~~~~~~I~~d~~N 175 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKN-YHAWSHRQWVLRTLGGWEDEL--EYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHCCCc
Confidence 99999999974 78899999999999998 567776666665555333343 5666666654443
No 98
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.69 E-value=4e-08 Score=103.15 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=81.3
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||.|.++|+++. +|+.|+++. ..++.|.+|.+.+++||+.+|.||++|+++.|.+++...|+.....
T Consensus 147 ~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~--- 216 (408)
T TIGR00115 147 AEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA--- 216 (408)
T ss_pred cCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC---
Confidence 689999999999975 899888654 3589999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCceEEEEEEEeeeccccccCCCCeE
Q 008780 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGVV 156 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~ 156 (554)
|.++.|.|+|.+|.....+.-+..+.
T Consensus 217 ------gk~~~f~v~i~~I~~~~~peldDefa 242 (408)
T TIGR00115 217 ------GKEATFKVTVKEVKEKELPELDDEFA 242 (408)
T ss_pred ------CCeEEEEEEEEEeccCCCCCCCHHHH
Confidence 89999999999998665444333333
No 99
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.67 E-value=5.9e-07 Score=97.03 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=69.4
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+..+||.+|.+|++++|.+...++++ .+|.. ..+|+.||.||..+|+..+|+.+.-.|-.+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk----qdp~~-----------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIK----QDPRN-----------PIAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCccc-----------hhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 478889999999999999999999999999 77776 445555555555555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+|.+..-|.+++.-...+|+++.|+-+|.+|++++|.|
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 55555555555555555555555555555555555554
No 100
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.66 E-value=4.6e-07 Score=104.29 Aligned_cols=114 Identities=25% Similarity=0.406 Sum_probs=95.3
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|..++..|++++|+..|+++++ ..|.+ ..+++.+|.+++..++|++|+..+++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRS-----------LYAKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------hhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466788899999999999999999999998 77766 56788888888889999999999999988
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
.+|.+..+++.+|.++...|++++|+..|++++.++|++ ..+...+..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~ 236 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATI 236 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence 888888889999999999999999999999999888887 4444444333
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=5.9e-07 Score=86.90 Aligned_cols=137 Identities=14% Similarity=0.139 Sum_probs=105.0
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc--------cCHHHHHHHH
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------GECRKSIEAC 470 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~~~ 470 (554)
..+...|..+++.+++++|+..|+++++ ..|.+.. ...+++++|.|+.++ +++.+|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPD--------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 4567889999999999999999999999 7776532 134688899999876 8899999999
Q ss_pred HHHHhhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHH
Q 008780 471 NKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQV 531 (554)
Q Consensus 471 ~~al~~~p~~~ka~-----------------~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~~~ 531 (554)
++++..+|++..++ +.+|..++..|++.+|+..|++++...|++. ..++..+..+......
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999986542 4678899999999999999999999988752 3455555555555543
Q ss_pred HHHHHHHHHHHhhccccc
Q 008780 532 KLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 532 ~~~~~~~~~y~~~f~~~~ 549 (554)
.+++. ..++.+-.++|
T Consensus 219 ~~~A~--~~~~~l~~~~~ 234 (235)
T TIGR03302 219 KDLAQ--DAAAVLGANYP 234 (235)
T ss_pred HHHHH--HHHHHHHhhCC
Confidence 33333 45555544443
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.66 E-value=2.5e-07 Score=81.58 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
....+.+|.-++..|++++|...++-+..+||.++..||++|.++..+|+|++|+..|.+|+.++|++ +....-+..+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999988 55555555555
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 008780 527 KQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~ 546 (554)
........++ +.|+...+
T Consensus 114 L~lG~~~~A~--~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAI--KALKAVVR 131 (157)
T ss_pred HHcCCHHHHH--HHHHHHHH
Confidence 5444333333 45554443
No 103
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.65 E-value=4.4e-07 Score=104.46 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=82.9
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...|..+...|++++|+..|++++. ..|.+ ..++.+++..+.+.++ .+|+..+++++.+.|++
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~----~~p~~-----------~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVK----KAPDN-----------AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI 836 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence 34455555566666666666666665 45544 4566777777777777 66777777777777777
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCL 545 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f 545 (554)
+..+..+|.++..+|++++|+..|+++++++|.+ ..+...+..+..+....+++. ..|++|+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~~~ 898 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-AAIRYHLALALLATGRKAEAR--KELDKLL 898 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHH--HHHHHHh
Confidence 7777777777777777777777777777777765 455555555544444344444 5666654
No 104
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.63 E-value=9.4e-08 Score=72.37 Aligned_cols=64 Identities=17% Similarity=0.400 Sum_probs=58.5
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 481 (554)
.+|..+++.|+|++|+..|+++++ ..|.+ ..+++.+|.|+..+|++++|+..++++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK----QDPDN-----------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC----CSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578999999999999999999999 88876 78999999999999999999999999999999875
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.63 E-value=9.3e-08 Score=73.05 Aligned_cols=67 Identities=28% Similarity=0.489 Sum_probs=60.2
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
+++.|+|++|+..+++++..+|++..+++.+|.+++..|++++|...+++++..+|++ +.++..+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999996 666665554
No 106
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.62 E-value=2.2e-06 Score=83.12 Aligned_cols=121 Identities=25% Similarity=0.331 Sum_probs=96.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|+|++|+..|++++. ..|..+ ....+.+++|.+|+++++|.+|+..+++.++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~--------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGP--------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45577899999999999999999999999 777762 224567899999999999999999999999999
Q ss_pred CCC---hHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHH
Q 008780 478 PAH---VKGLYRRGMAYMALGE------------------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~---~ka~~~~g~a~~~l~~------------------~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~~ 530 (554)
|++ ..++|.+|.++..+++ ..+|+..|++.++..|++. .+++..+..++.++.
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 876 4589999999866641 3578899999999999873 234444455544443
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.59 E-value=9.8e-07 Score=70.47 Aligned_cols=98 Identities=23% Similarity=0.344 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
+++++|.++...+++.+|+..+.++++..|.+..+++.+|.++...+++++|+..|++++.+.|.+ ......+..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999987 4455555555544
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 008780 529 RQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 529 ~~~~~~~~~~~~y~~~f~~~~ 549 (554)
....+++. ..+.+.+...|
T Consensus 81 ~~~~~~a~--~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEAL--EAYEKALELDP 99 (100)
T ss_pred HHhHHHHH--HHHHHHHccCC
Confidence 44333433 56666655443
No 108
>PRK01490 tig trigger factor; Provisional
Probab=98.59 E-value=1.2e-07 Score=100.42 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=78.4
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||.|.++|++.. +|+.|+++. ..++.|.+|.+++++||+.+|.||++|+++.|.+++...|+...+.
T Consensus 158 ~~~gD~V~vd~~~~~-~g~~~~~~~------~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la--- 227 (435)
T PRK01490 158 AENGDRVTIDFVGSI-DGEEFEGGK------AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA--- 227 (435)
T ss_pred CCCCCEEEEEEEEEE-CCEECcCCC------CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC---
Confidence 689999999999996 898887654 3589999999999999999999999999999999998999876654
Q ss_pred CCCCCCCCceEEEEEEEeeecccccc
Q 008780 125 PSTFPKDEELHFEIEMIDFAKAKIIA 150 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~~~~ 150 (554)
|.++.|.|+|.++.....+.
T Consensus 228 ------gk~~~f~v~v~~V~~~~~pe 247 (435)
T PRK01490 228 ------GKEATFKVTVKEVKEKELPE 247 (435)
T ss_pred ------CCeEEEEEEEEEeccCCCCC
Confidence 88999999999998654433
No 109
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.57 E-value=9.1e-07 Score=79.04 Aligned_cols=99 Identities=28% Similarity=0.320 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCChHH
Q 008780 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------GECRKSIEACNKVLDANPAHVKG 483 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl----------~~~~~A~~~~~~al~~~p~~~ka 483 (554)
|+.|.+.|+.+.. .+|.| ...++|.|.+++.+ ..+++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~----~nP~D-----------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYA----KNPLD-----------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHH----hCcHh-----------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 6788899998888 78888 56677777776665 34788999999999999999999
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 484 LYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 484 ~~~~g~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
++.+|.||..++. |++|..+|++|...+|+| ...+..|....+.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~ka 126 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHhh
Confidence 9999999998765 889999999999999998 5677766655443
No 110
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.56 E-value=4.7e-07 Score=96.31 Aligned_cols=103 Identities=23% Similarity=0.328 Sum_probs=94.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHH--HHHHHHh
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE--ACNKVLD 475 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~--~~~~al~ 475 (554)
+..++..|..+..+|++.+|...|..|+. ++|++ ..+...+|.|+++.|+-.-|.. ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~h-----------v~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDH-----------VPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCC-----------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 45568889999999999999999999999 99998 7889999999999999888888 9999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
+||.|.+|||.+|.++..+|+.++|..+|..|+++++.++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999998873
No 111
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.56 E-value=2.7e-07 Score=94.17 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
...++|+|.+|.++++|++|+..|++||+++|++..+ ||++|.+|..+|++++|+++|++|+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999865 9999999999999999999999999983
No 112
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.3e-07 Score=98.44 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=78.2
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||.|+|+|.++ .||..|... ....+.+.+|++++||||+.+|.||++|++..|.+-....|....+.
T Consensus 158 a~~gD~v~IDf~g~-iDg~~fegg------~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La--- 227 (441)
T COG0544 158 AENGDRVTIDFEGS-VDGEEFEGG------KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA--- 227 (441)
T ss_pred cccCCEEEEEEEEE-EcCeeccCc------cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC---
Confidence 68999999999997 699988844 44679999999999999999999999999999877777777766664
Q ss_pred CCCCCCCCceEEEEEEEeeeccccccCCC
Q 008780 125 PSTFPKDEELHFEIEMIDFAKAKIIADDF 153 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~~~~~d~ 153 (554)
|.+..|.|+|..|.....+.-|.
T Consensus 228 ------GK~a~F~V~vkeVk~~elpEldD 250 (441)
T COG0544 228 ------GKEATFKVKVKEVKKRELPELDD 250 (441)
T ss_pred ------CCceEEEEEEEEEeecCCCCCCH
Confidence 88999999999998765444333
No 113
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=3.2e-07 Score=88.44 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~ 523 (554)
..+++|+|.|++--++|+-++..+.+|+.... .-+..||++|.+....|++..|.++|+-||.-||+| .++.+-|.
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLa 436 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLA 436 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHH
Confidence 56899999999999999999999999997643 357899999999999999999999999999999998 56666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccC
Q 008780 524 KLKKQRQVKLKVRLENSLKGCLTRSLGKFL 553 (554)
Q Consensus 524 ~l~~~~~~~~~~~~~~~y~~~f~~~~~~~~ 553 (554)
-|+.+...-..++ ..|...-+.+|+.|.
T Consensus 437 vL~~r~G~i~~Ar--sll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 437 VLAARSGDILGAR--SLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHhhcCchHHHH--HHHHHhhhhCccccc
Confidence 6665555444555 667776666776653
No 114
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.55 E-value=1e-06 Score=80.58 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=84.2
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH--- 480 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~--- 480 (554)
..+.+|-...|..+...+...++ ....+ ....+++++|.++..+++|++|+..+++++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~---------~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 71 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILP----TTSGE---------KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR 71 (168)
T ss_pred cccccccccccccchhhhhHhcc----CCchh---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence 44566666667776666644443 22222 236789999999999999999999999999987653
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+.+|+++|.++..+|++++|+..|++|+.++|.+ ......+..+..
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~ 117 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Confidence 4589999999999999999999999999999987 444444443333
No 115
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1e-06 Score=87.58 Aligned_cols=121 Identities=24% Similarity=0.355 Sum_probs=101.1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHh-hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV-GKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~-~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
.+.+++-+|..++-..+.+.|+.+|+++|+ ++|+..+...... ......+-+.|.-.++.|+|..|.+.|..+|.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 477889999999999999999999999999 9998755433222 22234567788888999999999999999999
Q ss_pred hCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 476 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 476 ~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
+||+| ++.|++||.++..+|+..+|+.+.+.|++|||.- ++..+..
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy---ikall~r 327 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY---IKALLRR 327 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH---HHHHHHH
Confidence 99975 7789999999999999999999999999999853 4444443
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.54 E-value=2.5e-06 Score=80.59 Aligned_cols=122 Identities=23% Similarity=0.336 Sum_probs=93.8
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|.+|+..|++.+. ..|.++ ....+.+.+|.++++.++|.+|+..+++.+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~----~~P~s~--------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLID----RYPNSP--------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHH----H-TTST--------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCh--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 367788999999999999999999999998 566552 23568899999999999999999999999999
Q ss_pred CCCCh---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHH
Q 008780 477 NPAHV---KGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQ 530 (554)
Q Consensus 477 ~p~~~---ka~~~~g~a~~~l~-----------~~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~~ 530 (554)
.|+++ .|+|.+|.+++.+. ...+|+..|+..++.-|++. ..++..+..|+..+.
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 99875 48999999987754 34589999999999999874 244445555554443
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.53 E-value=8.1e-07 Score=91.35 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=79.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
+...|..++..++|.+|+..+++||+++|+++.+|+.+|.+|..+|++++|+.++++|++++|++ ..+...+..+...+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 45668889999999999999999999999999999999999999999999999999999999998 56666666665555
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 008780 530 QVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 530 ~~~~~~~~~~~y~~~f~~~~ 549 (554)
...+.+. ..|++.....|
T Consensus 84 g~~~eA~--~~~~~al~l~P 101 (356)
T PLN03088 84 EEYQTAK--AALEKGASLAP 101 (356)
T ss_pred CCHHHHH--HHHHHHHHhCC
Confidence 5333443 56666655444
No 118
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.53 E-value=1.2e-06 Score=92.39 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=113.7
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
.+..+..++..|..|...++|.+|+..|++|+..+......+ ....+..+.|||..|.+.|+|++|..+|++|
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 344566667899999999999999999999999877654433 2334778999999999999999999999999
Q ss_pred HhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC--hHHHHHHHHHHHHHHHHHHHHHHH
Q 008780 474 LDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-----KSS--EPDATAALSKLKKQRQVKLKVRLE 538 (554)
Q Consensus 474 l~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~-----P~~--~~~~~~~l~~l~~~~~~~~~~~~~ 538 (554)
+++- |.-+..+...+.++..++++++|...|++++++- ++| -..++..|..+.....+.+.+.
T Consensus 310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-- 387 (508)
T KOG1840|consen 310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-- 387 (508)
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH--
Confidence 9873 4456788899999999999999999999999972 222 1345566667766666444544
Q ss_pred HHHHhhcccc
Q 008780 539 NSLKGCLTRS 548 (554)
Q Consensus 539 ~~y~~~f~~~ 548 (554)
.+|+++....
T Consensus 388 ~~~k~ai~~~ 397 (508)
T KOG1840|consen 388 ELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHH
Confidence 6787776553
No 119
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.7e-06 Score=83.62 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=95.2
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc---CHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEAC 470 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~ 470 (554)
..+.++.+.-.|..++..+++..|...|.+|++ +.|++ ..++..+|.+++... .-.++...+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n-----------~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR----LAGDN-----------PEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344567788999999999999999999999999 89988 567777777776653 478899999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
++++..||.|+.+++.+|..+++.|+|.+|+..+++.|.+.|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999873
No 120
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=5.9e-07 Score=89.81 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=102.2
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+.++.++||..|..|++++|.+.|++||+ .+.. ...+++|++..+.++++.++|++++-+.-.+-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~----ndas-----------c~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALN----NDAS-----------CTEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHc----CchH-----------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999998 3222 36789999999999999999999999988887
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
-+|+..++.++.+|..+.+...|++.|.++..+-|++ +.+...|..|..+..
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~d-p~ilskl~dlydqeg 606 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND-PAILSKLADLYDQEG 606 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC-HHHHHHHHHHhhccc
Confidence 8899999999999999999999999999999999998 667767777765554
No 121
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.50 E-value=1.6e-06 Score=73.81 Aligned_cols=101 Identities=27% Similarity=0.346 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAAL 522 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l 522 (554)
..++++|.++.+.++|++|+..|.+++..+|++ ..+++.+|.++...+++++|+..|++++..+|++. ..+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 578999999999999999999999999999876 67999999999999999999999999999999863 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 523 SKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 523 ~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
..+........++. ..|..+....|+
T Consensus 83 ~~~~~~~~~~~~A~--~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAK--ATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHH--HHHHHHHHHCcC
Confidence 44444443333443 677777766654
No 122
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.49 E-value=4.4e-07 Score=69.28 Aligned_cols=67 Identities=27% Similarity=0.397 Sum_probs=60.2
Q ss_pred hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 487 (554)
+++.|+|++|+..|++++. ..|.+ ..+++++|.||++.|++++|...+.+++..+|+++..+.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ----RNPDN-----------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH----HTTTS-----------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4678999999999999999 88988 67899999999999999999999999999999988777766
Q ss_pred HH
Q 008780 488 GM 489 (554)
Q Consensus 488 g~ 489 (554)
++
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 123
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.48 E-value=3.1e-06 Score=72.13 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+.+.|..+-..|+.++|+..|++|+. ..... ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~--------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA----AGLSG--------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCc--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 467888999999999999999999999 44333 123568899999999999999999999999999888
Q ss_pred ---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 480 ---HVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 480 ---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
+......++.++..+|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888899999999999999999988775
No 124
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=4.7e-07 Score=92.18 Aligned_cols=123 Identities=22% Similarity=0.240 Sum_probs=103.8
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc---cCHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRKSI 467 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl---~~~~~A~ 467 (554)
+.+..+.++..+..||..|-.+.+..|+..|.+++. ..|.. ..+|.|+|.++++. ++--.|+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q----~~~~~-----------~~~l~nraa~lmkRkW~~d~~~Al 431 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ----YVPDA-----------IYLLENRAAALMKRKWRGDSYLAL 431 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh----hccch-----------hHHHHhHHHHHHhhhccccHHHHH
Confidence 467788899999999999999999999999999998 44443 67999999999985 5788999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
..|..|++++|...||||+++.|+..++++.+|+.+...+....|.+ .+......-+.+..
T Consensus 432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd-~a~~~~v~~l~rDi 492 (758)
T KOG1310|consen 432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD-VARQNFVLCLPRDI 492 (758)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh-hhhhhhhhccccch
Confidence 99999999999999999999999999999999999988777778865 34444443343333
No 125
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.46 E-value=2.9e-06 Score=96.36 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=96.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+..+|..+...|++++|+..+++++. ..|.+ ..+++++|.++..+|++++|+..++++++++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~----~~P~n-----------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAY----NAPGN-----------QGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 34556788899999999999999999999 88988 6799999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|++..+++.+|.+++.+++|++|...++++++.+|++
T Consensus 424 Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 424 PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999998
No 126
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.45 E-value=4.5e-07 Score=71.34 Aligned_cols=65 Identities=25% Similarity=0.409 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
...+++|+|.+|..+|+|++|+.++++++.+. |.-+.+++++|.++..+|++++|+..+++|+++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999762 234779999999999999999999999999986
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=2.4e-06 Score=76.11 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=43.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..........+..+++..+...+.+.+. -.|... ....+.+.+|.+++..|++++|+..++.++...
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~s~--------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAK----DYPSSP--------YAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCh--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 33444444444444555444444444444 233220 112334444555555555555555555555443
Q ss_pred CCC---hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780 478 PAH---VKGLYRRGMAYMALGEFEEAQRDFEM 506 (554)
Q Consensus 478 p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~ 506 (554)
|+. ..+.++++.+++..++|++|+..++.
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 322 23444455555555555555554433
No 128
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.42 E-value=3.8e-06 Score=80.32 Aligned_cols=106 Identities=17% Similarity=0.279 Sum_probs=94.2
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+++.+-.+++.|+|..|...|..-+. .-|.+. ....+++-||.|++.+|+|.+|...+..+..-.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~----~YP~s~--------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIK----KYPNST--------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCc--------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 34488999999999999999999999988 556541 235689999999999999999999999999998
Q ss_pred CCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 478 PAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 478 p~~~---ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
|.++ .++|.+|.+...+++.++|.+.|+++.+--|+..
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 8765 5699999999999999999999999999999983
No 129
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.42 E-value=4.2e-06 Score=94.17 Aligned_cols=147 Identities=9% Similarity=0.003 Sum_probs=108.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH----------------H-HHHhh------hHHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVFVG------KRNLLHLNV 453 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee----------------~-~~~~~------~~~~~~~nl 453 (554)
.+...+..+...+++|+|..|+..|+++++ .+|.+... . ..+.. .....+..+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 345778899999999999999999999998 66665211 0 00111 112234445
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008780 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL 533 (554)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (554)
|.++..+|+|++|+..++++++.+|+++.+++.++.++...+++++|+..++++...+|.+ ... ..+..+........
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-QNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-HHH-HHHHHHHHhcchHH
Confidence 7799999999999999999999999999999999999999999999999999999999986 333 33333333222222
Q ss_pred HHHHHHHHHhhccccccc
Q 008780 534 KVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 534 ~~~~~~~y~~~f~~~~~~ 551 (554)
++- ..|++++...|++
T Consensus 187 ~AL--~~~ekll~~~P~n 202 (822)
T PRK14574 187 DAL--QASSEAVRLAPTS 202 (822)
T ss_pred HHH--HHHHHHHHhCCCC
Confidence 343 7899998887764
No 130
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.39 E-value=1.6e-06 Score=91.09 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=72.5
Q ss_pred CCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcce
Q 008780 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247 (554)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~ 247 (554)
.++.||.|+++|+++. +|..++++. +.++.|.+|.+.++|||+++|.||++|++++|.++....|+... -++++
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----~~gk~ 219 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----LAGKE 219 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc----CCCCe
Confidence 5788999999999965 888877653 57899999999999999999999999999999998766665432 25789
Q ss_pred EEEEEeeeeee
Q 008780 248 VHFEVELVHLI 258 (554)
Q Consensus 248 l~~~v~l~~~~ 258 (554)
+.|.|+|+++.
T Consensus 220 ~~f~v~i~~I~ 230 (408)
T TIGR00115 220 ATFKVTVKEVK 230 (408)
T ss_pred EEEEEEEEEec
Confidence 99999999995
No 131
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.37 E-value=2e-06 Score=67.62 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|..++..|+|++|+..|++|++......+. ....+.++.|+|.||..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457788999999999999999999999999974444322 122378999999999999999999999999997
Q ss_pred h
Q 008780 476 A 476 (554)
Q Consensus 476 ~ 476 (554)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 6
No 132
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.36 E-value=3.9e-06 Score=77.05 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~ 523 (554)
..+++++|.++...+++++|+.+|++++.+.|+. ..+++.+|.++..+|++++|+..|+++++++|++ ......+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHH
Confidence 6789999999999999999999999999987653 5799999999999999999999999999999987 44444444
Q ss_pred HH
Q 008780 524 KL 525 (554)
Q Consensus 524 ~l 525 (554)
.+
T Consensus 114 ~~ 115 (172)
T PRK02603 114 VI 115 (172)
T ss_pred HH
Confidence 33
No 133
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.35 E-value=2.4e-06 Score=66.16 Aligned_cols=70 Identities=26% Similarity=0.455 Sum_probs=63.9
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHH
Q 008780 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484 (554)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~ 484 (554)
.+.+++.++|+.|+..+++++. ++|.+ ..++.++|.|+.++|+|.+|+..++++++..|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE----LDPDD-----------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH----hCccc-----------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4578899999999999999999 88887 78999999999999999999999999999999998887
Q ss_pred HHHHH
Q 008780 485 YRRGM 489 (554)
Q Consensus 485 ~~~g~ 489 (554)
..++.
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 76654
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.35 E-value=5.9e-06 Score=90.17 Aligned_cols=144 Identities=22% Similarity=0.292 Sum_probs=114.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
.+.+.+.|..+|..|++..|...+.+|+..+......+ +. ......+.+|+|.|+-.++++..|...|..++...
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d--e~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD--EG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc--cc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 45678899999999999999999999998533211111 11 22336789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVR--LENSLKGCLTR 547 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~--~~~~y~~~f~~ 547 (554)
|.+..++.|+|......++..+|...++.++.+|..| +.++..+..+..+.+..+.++ +...+++.+..
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n-p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN-PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC-cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 9999999999987888899999999999999999988 789999998877776333333 22344444443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=1.5e-05 Score=81.41 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=98.2
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
....+-.+...+..++++.|...++..+. ..|++ ..++.-++..+++.+++++|++.+++++.++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~----~~P~N-----------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA----AQPDN-----------PYYLELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 44556667777788888888888887666 77877 5677778888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|+..-..+++|++++..|++.+|+..++..+.-+|++ +..+..|.+....+.
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay~~~g 422 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-PNGWDLLAQAYAELG 422 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999988 778888888777665
No 136
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.31 E-value=4.2e-05 Score=63.11 Aligned_cols=110 Identities=20% Similarity=0.347 Sum_probs=84.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA- 476 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 476 (554)
+-.....|...+..|.|.+|...|++|++.-..+.+...-+-.-+ -.-||.-|+.++.++|+|++++..+.++|.+
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GF---DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGF---DAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 344556778888999999999999999997776655442222222 2568899999999999999999999999954
Q ss_pred ------CCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 477 ------NPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 477 ------~p~----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+.+ +..+.|++|.++..+|+.++|+..|+++-+.
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 332 5778899999999999999999999998764
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.30 E-value=1.3e-05 Score=87.54 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=109.1
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+.-.++.+|-.++|..+...+.-|+.. . . ...+.+..++++|.||..+|+|++|..+|.+++..+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~----t-~-------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKN----T-E-------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHh----h-h-------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 345567888899999999999999988872 1 1 123346789999999999999999999999999999
Q ss_pred CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-H-HHHHHHHHHHHHhhccc
Q 008780 478 PAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR-Q-VKLKVRLENSLKGCLTR 547 (554)
Q Consensus 478 p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~-~-~~~~~~~~~~y~~~f~~ 547 (554)
+++ .-+++.+|+.++..|+++.|+.+|+++++..|++ .+....|..|.... + ..+.++...+..+....
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 998 9999999999999999999999999999999998 67777888776655 2 22222222555555443
No 138
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.30 E-value=3.6e-06 Score=83.77 Aligned_cols=134 Identities=18% Similarity=0.259 Sum_probs=99.7
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC--CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~--p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
..+......+.+.+++.++...+.++.. .. +.+ ..++..+|.++.+.|++++|+..+++++++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~-----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDS-----------ARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-----T---T------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3344555667788999999999888775 22 222 678999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+|++..++..++.++...|++++|+..++...+..|++ +..+..+..+.......+++. ..|.+.....|+
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-~~~~~~la~~~~~lg~~~~Al--~~~~~~~~~~p~ 246 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-PDLWDALAAAYLQLGRYEEAL--EYLEKALKLNPD 246 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-CCHCHHHHHHHHHHT-HHHHH--HHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-HHHHHHHHHHhcccccccccc--cccccccccccc
Confidence 99999999999999999999999999999988887776 457777777777666555555 777777776554
No 139
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.28 E-value=1.7e-05 Score=83.76 Aligned_cols=126 Identities=21% Similarity=0.255 Sum_probs=97.2
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA- 476 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 476 (554)
.......+..++.+|+|+.|...++.|++.+......+ ......+..++|..|+.+++|.+|+..|++||.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44455599999999999999999999999754433322 1223455667999999999999999999999976
Q ss_pred -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHH
Q 008780 477 -------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK----SSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 477 -------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P----~~~~~~~~~l~~l~~~~~ 530 (554)
+|.-+-++.++|.+|...|+|++|..++++|+++-- .+..++...|..+....+
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999999732 122456666555544433
No 140
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.27 E-value=3.2e-05 Score=84.00 Aligned_cols=137 Identities=19% Similarity=0.292 Sum_probs=109.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+...|..+-++|+..+|+..+-.|.. ++|.+ ...|..++....+++++.+|+-+|.+||.++
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~d-----------~e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPKD-----------YELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCC-----------hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 45678899999999999999999999999 99998 4678888888899999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccccccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ----VKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~----~~~~~~~~~~y~~~f~~~~~~ 551 (554)
|.+.+.+++++..|.++|++..|...|.+++.++|.. +.......+....+ ..+.++..+.+...+....+.
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~--d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV--DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999943 44444444444333 222233335555555544333
No 141
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=1.5e-05 Score=82.71 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=124.8
Q ss_pred chHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhh
Q 008780 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRL 408 (554)
Q Consensus 329 v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 408 (554)
.+.-|++++..|+.|.... +.|.||. ...+..+.++.++-.|..+
T Consensus 285 ~pdPf~eG~~lm~nG~L~~---------------------A~LafEA--------------AVkqdP~haeAW~~LG~~q 329 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSE---------------------AALAFEA--------------AVKQDPQHAEAWQKLGITQ 329 (579)
T ss_pred CCChHHHHHHHHhcCCchH---------------------HHHHHHH--------------HHhhChHHHHHHHHhhhHh
Confidence 5677888888898887321 1123321 2334466788888899988
Q ss_pred hhcCCHHHHHHHHHHHHHHhhccCCCChhH-----------------------H--------------------------
Q 008780 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------------G-------------------------- 439 (554)
Q Consensus 409 ~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee-----------------------~-------------------------- 439 (554)
...++=..|+..+++|++ ++|.+.+- |
T Consensus 330 aENE~E~~ai~AL~rcl~----LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 330 AENENEQNAISALRRCLE----LDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhccchHHHHHHHHHHHh----cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 888888888888888888 77765420 0
Q ss_pred -----HHHhh------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 008780 440 -----KVFVG------------KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502 (554)
Q Consensus 440 -----~~~~~------------~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~ 502 (554)
..+.+ .-..++.-||..|...++|++|+++++.||..+|++...|-|+|-++..-.+.++|+.
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIs 485 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAIS 485 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHH
Confidence 00000 1123567788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 503 DFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 503 ~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
.|++||+|.|+- ..+|--|....-.+...+++. ++|-..+.
T Consensus 486 AY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~--~hlL~AL~ 526 (579)
T KOG1125|consen 486 AYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAV--KHLLEALS 526 (579)
T ss_pred HHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHH--HHHHHHHH
Confidence 999999999986 334433443333333344443 45554443
No 142
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.24 E-value=1.7e-05 Score=81.33 Aligned_cols=73 Identities=27% Similarity=0.351 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (554)
.....+..+.++|..|++.|+|++|+..|++||+ ++|++.+. ..+|+|+|.||.++|++++|+.++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA--------~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEA--------QAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHH--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456788999999999999999999999999999 89987320 25699999999999999999999999
Q ss_pred HHhhC
Q 008780 473 VLDAN 477 (554)
Q Consensus 473 al~~~ 477 (554)
|+++.
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99983
No 143
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.24 E-value=2.2e-05 Score=74.19 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=79.9
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 483 (554)
..+.+...|+-+.++..-.+++. ..|.+ ..++.-++..+.+.|+|.+|+..+.++..++|++.++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~----~~~~d-----------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI----AYPKD-----------RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc----cCccc-----------HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 44444555555555554444444 34444 3455558899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008780 484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520 (554)
Q Consensus 484 ~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 520 (554)
|.-+|.+|.++|++++|...|.+|+++.|+++..+.+
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nN 173 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN 173 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhh
Confidence 9999999999999999999999999999988544433
No 144
>PRK01490 tig trigger factor; Provisional
Probab=98.22 E-value=6.5e-06 Score=87.20 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=71.1
Q ss_pred CCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcce
Q 008780 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247 (554)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~ 247 (554)
.++.||.|+++|++.. +|..++++ .+.++.|.+|.++++|||+++|.||++|+++.|.++....|+... -.+.+
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~-~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~----lagk~ 230 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGG-KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED----LAGKE 230 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCC-CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----CCCCe
Confidence 4789999999999975 88877654 456899999999999999999999999999999987665564322 15689
Q ss_pred EEEEEeeeeee
Q 008780 248 VHFEVELVHLI 258 (554)
Q Consensus 248 l~~~v~l~~~~ 258 (554)
..|.|.|.++.
T Consensus 231 ~~f~v~v~~V~ 241 (435)
T PRK01490 231 ATFKVTVKEVK 241 (435)
T ss_pred EEEEEEEEEec
Confidence 99999999995
No 145
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.5e-06 Score=87.89 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEE--EEeCCccCCCCCCCCCCCcc
Q 008780 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVI--YVTSQYLTPSPLMPVVEGCE 246 (554)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~--~v~~~~~~g~~~~~~ip~~~ 246 (554)
.+.||.|+|+|.+ ..||..|.+. ..+.+.+.+|+|+++|||+++|.||+.|+.+.| ++|.+|.-++- .++
T Consensus 158 a~~gD~v~IDf~g-~iDg~~fegg-~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aGK 229 (441)
T COG0544 158 AENGDRVTIDFEG-SVDGEEFEGG-KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AGK 229 (441)
T ss_pred cccCCEEEEEEEE-EEcCeeccCc-cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CCC
Confidence 7899999999999 7788877643 446789999999999999999999999999885 44445433322 567
Q ss_pred eEEEEEeeeeee
Q 008780 247 EVHFEVELVHLI 258 (554)
Q Consensus 247 ~l~~~v~l~~~~ 258 (554)
+..|.|.|..+.
T Consensus 230 ~a~F~V~vkeVk 241 (441)
T COG0544 230 EATFKVKVKEVK 241 (441)
T ss_pred ceEEEEEEEEEe
Confidence 889999999985
No 146
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.22 E-value=1.6e-05 Score=89.53 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=91.9
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHH
Q 008780 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484 (554)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~ 484 (554)
|..+...|+|++|+..|+++++ .+|.+ ..++..++.++..++++++|+..+.+++..+|.+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~----~dP~n-----------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~- 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLK----KDPTN-----------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY- 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence 4455577999999999999999 89988 4566788999999999999999999999999985554
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLT 546 (554)
Q Consensus 485 ~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~ 546 (554)
..++..+..++++.+|+..|+++++++|++. ++...+-.+-.... .....++.+.+..+|.
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~-e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~ 234 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTSE-EVLKNHLEILQRNRIVEPALRLAKENPNLVS 234 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHhCccccC
Confidence 4445555557788779999999999999984 34333333323332 3333343344444454
No 147
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.22 E-value=3.1e-05 Score=79.74 Aligned_cols=113 Identities=22% Similarity=0.165 Sum_probs=91.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH--------------------HHh------hhHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK--------------------VFV------GKRNLLHL 451 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~--------------------~~~------~~~~~~~~ 451 (554)
.+....++..++..|++++|+..++++++ ..|.+..-.. .+. ......+.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 118 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLG 118 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHH
Confidence 34455678899999999999999999998 5555432110 000 01123556
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++|.++..+|++.+|+..++++++++|+++.++..+|.++...|++++|+..+++++.+.|.+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 889999999999999999999999999999999999999999999999999999999998753
No 148
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=7.1e-06 Score=87.09 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=91.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+.+.+..|+..+++++|.+|.++++.+++ ++|.. ...|+++|.|.++++++..|..+|.+++.++
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~----~nplq-----------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLE----INPLQ-----------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhh----cCccc-----------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 34455666777788999999999999999 77766 6789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|++..+|.+++.+|+.+++-.+|...++.|++-+-+|
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999987544
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=0.00013 Score=64.92 Aligned_cols=98 Identities=21% Similarity=0.355 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
.......|..++..|+|++|+..|+.++. ..++. .+...+.+++|.|++.+++|++|+..++. +.-.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~----~~~d~--------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALA----NAPDP--------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence 44567899999999999999999999998 44332 33466889999999999999999999966 3444
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 508 (554)
+-.+.++..+|.++...|++++|+..|++||
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5567789999999999999999999999885
No 150
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.6e-05 Score=82.26 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 519 (554)
..++..+|...+..+.|.+|+.+++.+++.- +.+.-.+.++|.++..++.|++|+..|++||.+.|.+ ..+.
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~ 492 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTH 492 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHH
Confidence 4567888999999999999999999999432 1244568999999999999999999999999999998 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780 520 AALSKLKKQRQVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 520 ~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
..+.-+...+..-+++. ..|.|.+...|+.
T Consensus 493 asig~iy~llgnld~Ai--d~fhKaL~l~p~n 522 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAI--DHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHhcChHHHH--HHHHHHHhcCCcc
Confidence 77777777666444554 6677777666554
No 151
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=4.7e-05 Score=73.84 Aligned_cols=139 Identities=14% Similarity=0.193 Sum_probs=104.7
Q ss_pred CCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH----------HhhccCCCChhHHHH---------------H
Q 008780 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR----------DFNHVNPQDDEEGKV---------------F 442 (554)
Q Consensus 388 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~----------~l~~~~p~~~ee~~~---------------~ 442 (554)
+++++++ ...+.+.|..++..|-++.|...|....+ .+-.+--.+ .||++ .
T Consensus 100 dlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 100 DLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred CCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccc
Confidence 3455443 56778889999999999999888876443 110000000 11111 1
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (554)
Q Consensus 443 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l 522 (554)
.-..+.+|+.+|..++...+.+.|.....+|++.||+++.|-..+|.+++..|+|+.|++.++++++.||.--+++-..|
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 12245688999999999999999999999999999999999999999999999999999999999999998766666667
Q ss_pred HHHHHHHH
Q 008780 523 SKLKKQRQ 530 (554)
Q Consensus 523 ~~l~~~~~ 530 (554)
..+...+.
T Consensus 256 ~~~Y~~lg 263 (389)
T COG2956 256 YECYAQLG 263 (389)
T ss_pred HHHHHHhC
Confidence 66666555
No 152
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=3.6e-05 Score=78.66 Aligned_cols=113 Identities=27% Similarity=0.316 Sum_probs=97.1
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+-..+..++..++..+|.+.+++++. +.|.. ..+..|+|.++++.|++.+|+...+..+.-+|++
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~----l~P~~-----------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALA----LDPNS-----------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh----cCCCc-----------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 34677888999999999999999999 88887 6789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
+..|..+|++|..+|+-.+|...+...+.+.-+- ..+...+...+++.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~-~~A~~~l~~A~~~~ 455 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRL-EQAIIFLMRASQQV 455 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence 9999999999999999999998888888887654 34444444444433
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.16 E-value=2.7e-05 Score=76.14 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=80.0
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--HHHH
Q 008780 448 LLHLNVAACL-LKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD--ATAA 521 (554)
Q Consensus 448 ~~~~nla~~~-~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~--~~~~ 521 (554)
...++.|.++ ++.++|++|+..|+..+...|++ +.++|.+|.+|+..|+|++|+..|++++...|++... +...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5678888886 66799999999999999999988 5799999999999999999999999999999987432 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780 522 LSKLKKQRQVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
+..+.......++++ +.|+++...+|++
T Consensus 223 lg~~~~~~g~~~~A~--~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAK--AVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHH--HHHHHHHHHCcCC
Confidence 333333333445555 7888888777764
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00011 Score=69.02 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=75.4
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH-----------------HHhhh------HHHHHHHHHHHH
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------VFVGK------RNLLHLNVAACL 457 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~-----------------~~~~~------~~~~~~nla~~~ 457 (554)
.+-.|..+-..|+|++|++.|...|+ -+|.+.--.+ .+.+. -..+|..+|..|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34566667778899999999988877 5555531100 00000 123667777778
Q ss_pred HHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC
Q 008780 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 458 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~---~~~~A~~~~~~al~l~P~~ 514 (554)
+.+++|.+|.-++++++-+.|.|+-.+-|+|..++.+| +++-|+++|.+|++++|.+
T Consensus 165 ~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 88888888888888888788877777777777777765 5667777888888877754
No 155
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.11 E-value=0.00016 Score=64.23 Aligned_cols=112 Identities=18% Similarity=0.112 Sum_probs=87.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-----C--CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-----N--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-----~--p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (554)
-..+...|......++...++..|.+|+.....- . ++-......+......++..++.++...+++.+|+..|
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3445566777778889999999999999865321 1 11122345566777888999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
.+++..+|.+..+|..+-.+|..+|++.+|++.|+++.+
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=98.11 E-value=4.2e-05 Score=78.51 Aligned_cols=104 Identities=14% Similarity=0.088 Sum_probs=78.3
Q ss_pred HHhhhhhhhcC---CHHHHHHHHHHHH---HHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc---------cCHHHH
Q 008780 402 RVTGNRLFKEG---KFELAKAKYEKVL---RDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---------GECRKS 466 (554)
Q Consensus 402 ~~~G~~~~~~g---~~~~A~~~Y~~al---~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl---------~~~~~A 466 (554)
.-+|..++.++ ....|+.++.+|+ . ++|.. ..+|.-+|.||+.+ ..-.+|
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~----ldp~~-----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSD----IQTLK-----------TECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhccc----CCccc-----------HHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 45555554333 4577888899999 5 66665 66777778887765 235678
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008780 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521 (554)
Q Consensus 467 ~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~ 521 (554)
...+++|+++||.++.|++.+|.++...++++.|...|++|+.++|+. ..+.-.
T Consensus 324 ~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~~~~~ 377 (458)
T PRK11906 324 LELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-ASLYYY 377 (458)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-HHHHHH
Confidence 888888888899999999999998888888888999999999998886 444433
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=7.6e-05 Score=80.16 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=85.2
Q ss_pred HHHHHHhhhhhhhcC---CHHHHHHHHHHHHHHhhccCCCChh---------------------HHHHH----h------
Q 008780 398 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDE---------------------EGKVF----V------ 443 (554)
Q Consensus 398 a~~~~~~G~~~~~~g---~~~~A~~~Y~~al~~l~~~~p~~~e---------------------e~~~~----~------ 443 (554)
|-.+.-+|..++.+. .+..|+.+|++|++ ++|+... ..... .
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 555666777776544 48899999999998 6665421 00000 0
Q ss_pred --hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 444 --GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 444 --~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
.....+|.-+|..+...+++++|...+++|++++| +..+|..+|.++...|++++|++.|++|+.++|.++
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 01124566777888888999999999999999999 578999999999999999999999999999999873
No 158
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.06 E-value=4.2e-05 Score=78.77 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=88.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+...|..+...|++.+|+..|++++. +.|.+ ..++.++|.++...|++++|+.++.+++...
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 34555778899999999999999999999 88887 6788999999999999999999999999988
Q ss_pred CCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 478 PAHV----KGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 478 p~~~----ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
|.+. ..++.+|.++..+|++++|+..|++++...|
T Consensus 179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 7432 3567899999999999999999999987776
No 159
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.03 E-value=8.2e-06 Score=52.82 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
+++|+++|.++..++++++|+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 356777777777777777777777777777775
No 160
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00015 Score=72.41 Aligned_cols=135 Identities=12% Similarity=0.079 Sum_probs=96.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH-------------
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC------------- 463 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~------------- 463 (554)
..+.+.-+|+.+...++..+|+-.|+.|.. +.|.+ ..+|-.+-.||+..+++
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~r-----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQM----LAPYR-----------LEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHh----cchhh-----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 355678899999999999999999999998 66654 34455555555544444
Q ss_pred -----------------------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008780 464 -----------------------RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520 (554)
Q Consensus 464 -----------------------~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 520 (554)
++|..+++++|.++|.+.+|-..+|..+...|+++++++.++++|...|+. ..+.
T Consensus 398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~ 475 (564)
T KOG1174|consen 398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHN 475 (564)
T ss_pred hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHH
Confidence 445555555556678888888888888888888888888888888888774 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 521 ALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
.|..+-...+..+++- ..|.+.++..|.
T Consensus 476 ~Lgd~~~A~Ne~Q~am--~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAM--EYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhhHHHHH--HHHHHHHhcCcc
Confidence 6666666665344443 567777766654
No 161
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.02 E-value=0.00034 Score=73.65 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=64.0
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
+...+.....+|-..+..|+|..|.+...++.+ ..|.. ...+.-.|.++..+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~----~~~~~-----------~~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD----HAAEP-----------VLNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455677888899999999999999999998888 44443 223334444555555555555555555
Q ss_pred HhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 474 LDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 474 l~~~p~~~-ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+..|++. .+...++..+...++++.|+..++++++.+|+|
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~ 186 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH 186 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55544443 233334555555555555555555555555554
No 162
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.00013 Score=70.89 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
.++.|.-+.+.+..+....+++.|+....+|+. .+|.. +.+-.-+|..++..|+|..|++.++.+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~c-----------vRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKC-----------VRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccc-----------eehhhhhhHHHHhccchHHHHHHHHHH
Confidence 456778888999999999999999999999999 77776 667788899999999999999999999
Q ss_pred HhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 474 LDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 474 l~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
++.||.+ ..++-.+..||..+|+.++.+..+.++.+..++. ++...+..+...+.
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~ 296 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLIELQE 296 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHHHHhh
Confidence 9999987 5678889999999999999999999999998874 45556666655555
No 163
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=9.4e-05 Score=82.86 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=65.8
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
....+......+...+++++|+.....+++ ..|.. ..+|+.+|..+++.+++.+|... .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~-----------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKS-----------ISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcc-----------eehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 345566777777788999999999888888 56655 45555555555555554444433 33333
Q ss_pred C-------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 477 N-------------------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 477 ~-------------------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
- +++-.|++.+|.||-.+|++++|.+.|+++|+++|+|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n 149 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN 149 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc
Confidence 3 3333677777777777777777777777777777766
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.00033 Score=62.89 Aligned_cols=111 Identities=18% Similarity=0.287 Sum_probs=93.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
.+.....|+.+...|++.+|..+|++++.= +...| ..+++.+|.+++..+++..|....+.+.+.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSG---IFAHD-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 344567899999999999999999999872 33344 6788999999999999999999999999999
Q ss_pred CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 478 PA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 478 p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
|. .+..+...|.++..+|++.+|...|+.++..-|+- ..+.....
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e 201 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP--QARIYYAE 201 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHH
Confidence 84 67888999999999999999999999999999874 34444433
No 165
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.00 E-value=4.3e-05 Score=76.32 Aligned_cols=115 Identities=11% Similarity=0.253 Sum_probs=94.1
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (554)
-++.+.....|..+|++++|..|+-.|+-||+++..- .|.. .+...+.....-+...+..||+++++.+-|+.+.
T Consensus 173 Dkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~-~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 173 DKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFK-ASAEDISSVASFIETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCC-CChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 3455666778899999999999999999999987652 1221 1222334444567789999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
.+.+.++|.+..-|.++|.|+..|.+|.+|.+.+..|.-+
T Consensus 252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887776553
No 166
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.97 E-value=8.6e-05 Score=78.13 Aligned_cols=133 Identities=18% Similarity=0.041 Sum_probs=101.7
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
........+..+...|++++|....+++++ ..|++... ....-+....+..++...++..++++++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~----~~pd~~~~---------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK----KLGDDRAI---------SLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCCcccc---------hhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 456677888999999999999999999999 77766210 00112222334457889999999999999
Q ss_pred CCCCh--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 477 NPAHV--KGLYRRGMAYMALGEFEEAQRDFE--MMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 477 ~p~~~--ka~~~~g~a~~~l~~~~~A~~~~~--~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
+|+++ ..+..+|..++..++|++|++.|+ ++++.+|++ .. ...+..+..+....++++ ..|++.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~-~~~La~ll~~~g~~~~A~--~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-ND-LAMAADAFDQAGDKAEAA--AMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HH-HHHHHHHHHHcCCHHHHH--HHHHHHHH
Confidence 99999 888899999999999999999999 688899986 33 446777766666445555 67776543
No 167
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.95 E-value=0.00048 Score=72.21 Aligned_cols=120 Identities=10% Similarity=0.070 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHH-HHHHHHccCHHHHHHHHH
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV-AACLLKLGECRKSIEACN 471 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nl-a~~~~kl~~~~~A~~~~~ 471 (554)
.+.+.+......|-..+..|+|..|.+...++-+ ..+ . ..+++.+ +.+..++|+++.|..++.
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~----~~~-~-----------p~l~~llaA~aA~~~g~~~~A~~~l~ 142 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNAD----HAE-Q-----------PVVNYLLAAEAAQQRGDEARANQHLE 142 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----ccc-c-----------hHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455677778888888889999988877766555 211 1 2233333 444477777777777777
Q ss_pred HHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 472 KVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 472 ~al~~~p~~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
++.+.+|++.- .....+..+...|+++.|+..++++++.+|+| ..+...+..+..+.
T Consensus 143 ~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~-~~al~ll~~~~~~~ 200 (398)
T PRK10747 143 RAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH-PEVLRLAEQAYIRT 200 (398)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence 77777777643 33445777777777777777777777777777 44444444444333
No 168
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.5e-06 Score=79.28 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=73.5
Q ss_pred cccCCCCeEEEEEecCCCCC-CCCCCCEEEEEEEEEecC--CcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCC
Q 008780 24 MKIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100 (554)
Q Consensus 24 ~~~~~~g~~~~~~~~G~g~~-~~~~gd~V~~~y~~~~~~--g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~ 100 (554)
..+...||.++|+..|.|.- ....|..|.+||.....+ ++++|+|+. .++|+.+++|...-++-|+..|..|.
T Consensus 5 a~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk----~gkPmeiiiGkkFkL~VwE~il~tM~ 80 (329)
T KOG0545|consen 5 ALLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK----VGKPMEIIIGKKFKLEVWEIILTTMR 80 (329)
T ss_pred hhccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh----cCCCeEEeeccccccHHHHHHHHHHh
Confidence 34567899999999999984 357899999999998754 789999997 78999999999999999999999999
Q ss_pred CCcEEEEEEe
Q 008780 101 KGEVSMFKMK 110 (554)
Q Consensus 101 ~Ge~~~~~ip 110 (554)
++|.+.|++.
T Consensus 81 v~EvaqF~~d 90 (329)
T KOG0545|consen 81 VHEVAQFWCD 90 (329)
T ss_pred hhhHHHhhhh
Confidence 9999988764
No 169
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.92 E-value=2.3e-05 Score=50.54 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+++|+.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888864
No 170
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.91 E-value=0.00012 Score=77.00 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=95.7
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+..+...+|..++|...+..-+..|. -.|.+ ...+.-.|..+..+|+-++|...+..++..|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eH-----------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILK----KFPEH-----------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH----hCCcc-----------chhHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 456677777888888888888888777 56666 334555677777899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
+.-+|.-+|..+..-.+|++|+++|+.||.++|+| ..+...|..|+..++
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-LQILRDLSLLQIQMR 123 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 667777777766655
No 171
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.91 E-value=1.1e-05 Score=52.25 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 008780 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502 (554)
Q Consensus 469 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~ 502 (554)
+|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 172
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00011 Score=71.43 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=83.5
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 481 (554)
.+.|.++++.|-+.+|.+.++.+|. ..|. ...+..|+.+|.+..+...|+..+.+.+..-|.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPH------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh----cCCc------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence 4789999999999999999999998 4443 45677788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..+.-.+++|..++++++|.+.|+.+++++|.|
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN 323 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 888888888888888888888888888888876
No 173
>PRK11906 transcriptional regulator; Provisional
Probab=97.89 E-value=9e-05 Score=76.14 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
...-.+|.+.-++|++ +++.| ..++..+|.++...++++.|+..+++|+.++|+++.+||.+|..
T Consensus 317 ~~~~~~a~~~A~rAve----ld~~D-----------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 317 ELAAQKALELLDYVSD----ITTVD-----------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred hHHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 3455677888888888 88888 78999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 491 YMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 491 ~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+...|+.++|++.+++|++++|.-
T Consensus 382 ~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccCchh
Confidence 999999999999999999999974
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.89 E-value=2.6e-05 Score=62.25 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=61.6
Q ss_pred ccCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008780 460 LGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRL 537 (554)
Q Consensus 460 l~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~ 537 (554)
.++|+.|+..++++++.+|. +...++.+|.|++.+|+|++|+..+++ ++.+|.+ ....-.+..+...+...+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi- 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAI- 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHH-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHH-
Confidence 58999999999999999995 567888899999999999999999999 8888876 455556666555555444444
Q ss_pred HHHHHh
Q 008780 538 ENSLKG 543 (554)
Q Consensus 538 ~~~y~~ 543 (554)
+.|.+
T Consensus 79 -~~l~~ 83 (84)
T PF12895_consen 79 -KALEK 83 (84)
T ss_dssp -HHHHH
T ss_pred -HHHhc
Confidence 45543
No 175
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=9.1e-05 Score=76.28 Aligned_cols=93 Identities=22% Similarity=0.266 Sum_probs=78.6
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 482 (554)
-.+..++..++-.+|++...+++. ..|.+ ..++...|..+++.++|+.|+..++++..+.|.+.+
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~----~~p~d-----------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~ 269 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALK----ENPQD-----------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE 269 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH
Confidence 355666667777888888888887 67766 667888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+|+.++.+|..+|+|++|+..++.+-.+
T Consensus 270 ~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 270 TWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999999999999888755544
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.88 E-value=0.00011 Score=73.05 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=86.3
Q ss_pred HHHHHHHHhhhhhhhc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 396 DEAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~-g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
..+..+...|..+... ++++.|+.+|++|++++..... ......++.++|.++.++++|.+|+..++++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3577788889999998 9999999999999997665331 12236789999999999999999999999988
Q ss_pred hhCCC------ChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 475 DANPA------HVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 475 ~~~p~------~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
...-+ +++ .+++.+.|++..|++..|...|++....+|.-
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 75321 344 45788899999999999999999999999843
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0001 Score=73.34 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.+.+..+..-|+.+-..++|.+|..+|.+|.++....... .....+|.+.+.||.+. ++.+|+.++++|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKG-DPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 3456666777787778999999999999999865543221 12256788889998777 9999999999999
Q ss_pred hhC--C----CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 008780 475 DAN--P----AHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKV 510 (554)
Q Consensus 475 ~~~--p----~~~ka~~~~g~a~~~l-~~~~~A~~~~~~al~l 510 (554)
.+- . .-++++.++|.+|... +++++|+..|++|+++
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 863 1 2377899999999998 9999999999999997
No 178
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.84 E-value=0.00026 Score=74.19 Aligned_cols=128 Identities=14% Similarity=0.069 Sum_probs=99.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
........+..+...|+.+.|.....++++ ..++. .+..-.+ ++..+++.+++..+++.++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~----~~~~~------------~l~~l~~--~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK----RQYDE------------RLVLLIP--RLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCH------------HHHHHHh--hccCCChHHHHHHHHHHHhh
Confidence 344556778889999999999999999888 43322 1222222 22459999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
+|+++..++.+|+.++..++|++|++.|+++++++|++ .....+..+..+....+++. .+|++-+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~--~~~~~La~~~~~~g~~~~A~--~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA--YDYAWLADALDRLHKPEEAA--AMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHHHHH--HHHHHHHh
Confidence 99999999999999999999999999999999999986 33446777766665444444 67777654
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0005 Score=66.77 Aligned_cols=118 Identities=15% Similarity=0.057 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 493 (554)
.+..+...+..|. .+|.| ..-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++.
T Consensus 138 ~~~l~a~Le~~L~----~nP~d-----------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~ 202 (287)
T COG4235 138 MEALIARLETHLQ----QNPGD-----------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY 202 (287)
T ss_pred HHHHHHHHHHHHH----hCCCC-----------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4455555666666 78888 66788899999999999999999999999999999999999999987
Q ss_pred cC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 494 LG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 494 l~---~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
.. .-.+|...|++|+.+||+| ..+...|..-.......+.+. ..++.|+...|
T Consensus 203 ~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~--~~Wq~lL~~lp 258 (287)
T COG4235 203 QAGQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAA--AAWQMLLDLLP 258 (287)
T ss_pred hcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHH--HHHHHHHhcCC
Confidence 64 5678999999999999998 556666665544444444554 67888877543
No 180
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.80 E-value=3.5e-05 Score=49.81 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
.+|+++|.||..+++|++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 579999999999999999999999999999974
No 181
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.80 E-value=7.8e-05 Score=80.39 Aligned_cols=114 Identities=30% Similarity=0.534 Sum_probs=102.2
Q ss_pred ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc--cCHHHHH
Q 008780 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GECRKSI 467 (554)
Q Consensus 390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl--~~~~~A~ 467 (554)
+....+..+..++..||.+|++++|..|.-.|..++. +.|.+ ......++.|.+.|++.+ ++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~----llp~~-------~~~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIK----LLPKD-------HHVVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhhe----ecccc-------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence 5667788999999999999999999999999999999 55533 122367889999999875 6899999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..|.-|+...|...+++++++.+|..+++++-|++++.-....+|++
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999998
No 182
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.0001 Score=78.48 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
..+...+|...+..++|.+|.++++..++++|-....||++|.|..+++++..|..+|.+++.++|+| .++++-|....
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ay 563 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAY 563 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHH
Confidence 34445555556667999999999999999999999999999999999999999999999999999998 67888887776
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008780 527 KQRQVKLKVRLENSLKGC 544 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~ 544 (554)
-+..+.+++. ..++..
T Consensus 564 i~~~~k~ra~--~~l~EA 579 (777)
T KOG1128|consen 564 IRLKKKKRAF--RKLKEA 579 (777)
T ss_pred HHHhhhHHHH--HHHHHH
Confidence 6666444444 444444
No 183
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.75 E-value=0.00044 Score=74.23 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=105.7
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...+..+.+.++-++|..+..+|-. +.|.. +..|+.+|.++...+++.+|...+..|+.+||++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~----~~~l~-----------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK----IDPLS-----------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh----cchhh-----------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 34455555566777788888888877 55544 7889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008780 481 VKGLYRRGMAYMALGEFEEAQR--DFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCL 545 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~--~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f 545 (554)
+.+..-+|.++...|+...|.. .+..|+++||.| .++|..|..+-+++...+.+. ..|....
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~~Aa--ecf~aa~ 781 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSKQAA--ECFQAAL 781 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchHHHH--HHHHHHH
Confidence 9999999999999999888888 999999999999 789999999888777444444 5555543
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.75 E-value=0.0018 Score=61.62 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=88.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+.+.|...++.|+|.+|+..|++... ..|.++- ...+...++.+++|.++|++|+...++-+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~----~~p~s~~--------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS----RHPFSPY--------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc--------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 66788999999999999999999999887 6676532 14677889999999999999999999999999
Q ss_pred CCChH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCh
Q 008780 478 PAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 478 p~~~k---a~~~~g~a~~~l--------~~~~~A~~~~~~al~l~P~~~ 515 (554)
|.++. ++|.+|.+++.. .--.+|+..|+..+.--|++.
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 87654 788899998764 223677888999999999873
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.73 E-value=0.00031 Score=59.90 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
.+++++|.++-.+|+.++|+..|+++++.... -..++..+|.++..+|++++|+..|++++.-.|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999999997543 3679999999999999999999999999999887
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.00033 Score=67.16 Aligned_cols=99 Identities=24% Similarity=0.263 Sum_probs=80.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
.+|.|.-+++.|+|..|...+..-+...|++ +.|+|++|++++.+|+|++|...|..+.+-.|++.. +-..|-+|-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K-ApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK-APDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC-ChHHHHHHH
Confidence 7899999999999999999999999999976 669999999999999999999999999999998843 323333333
Q ss_pred ---HHHHHHHHHHHHHHHHhhccccccc
Q 008780 527 ---KQRQVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 527 ---~~~~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
.++...+.++ ..|..+..++|+.
T Consensus 223 ~~~~~l~~~d~A~--atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEAC--ATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHH--HHHHHHHHHCCCC
Confidence 3333445555 7888888887763
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.71 E-value=9.4e-05 Score=50.98 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+++.+|.+|..+|++++|++.|+++++.+|+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44445555555555555555555555555544
No 188
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.69 E-value=9.9e-05 Score=50.88 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
.+++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 3688999999999999999999999999999999999998863
No 189
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0007 Score=61.47 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=69.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~-----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
-|.-+++.|+|.+|...|..||++-|.. .-.|.++|.|++.++.++.|+.+..+|++|+|.+.. +......+..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-Al~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-ALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH-HHHHHHHHHH
Confidence 3555778999999999999999999864 347889999999999999999999999999998732 2222222333
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q 008780 528 QRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 528 ~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
++...+.+- .-|++++...|.
T Consensus 180 k~ek~eeal--eDyKki~E~dPs 200 (271)
T KOG4234|consen 180 KMEKYEEAL--EDYKKILESDPS 200 (271)
T ss_pred hhhhHHHHH--HHHHHHHHhCcc
Confidence 333233333 567777766553
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.00028 Score=75.82 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 482 (554)
...|..+|.++...|++++|+..+.+|+.++|.++.
T Consensus 453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 468899999999999999999999999999999885
No 191
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.62 E-value=0.00015 Score=70.75 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=59.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
+-..|.-|+++|.|++||++|.+++.++|.|+-.+-+||.||+.+.+|..|..+...|+.||-
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 346788999999999999999999999999999999999999999999999999999999985
No 192
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.60 E-value=0.00074 Score=72.27 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 520 (554)
...+++.+|.+|..+|++++|+.+.++||+..|..+..|+.+|+++-..|++.+|...++.|..+|+.| .-+..
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-RyiNs 266 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-RYINS 266 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-HHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999999987 33433
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.59 E-value=0.00098 Score=64.67 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 516 (554)
...++..|.-++..|+|++|+..+++++...|....+ .+.+|.+|+.+++|++|+..|++.++++|+|+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 4557788999999999999999999999999987655 599999999999999999999999999999853
No 194
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0013 Score=66.54 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=51.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
-||..|+...=|++|+.++++|--+.|+-.|.-...+.|+.+.|+|..|...|+...+--|.+ .+..+.|-++.-
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped-ldclkflvri~~ 705 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED-LDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc-hHHHHHHHHHhc
Confidence 345556666667777777777777777777777777777777777777777777777777776 444444444443
No 195
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.57 E-value=0.00086 Score=75.37 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=92.2
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-- 476 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-- 476 (554)
.+++.+|.+|-+.|++++|...|+++|+ ++|.+ +.+++|+|..|... +.++|+.++.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D~~n-----------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVK----ADRDN-----------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999 88988 78899999999888 999999999988843
Q ss_pred ------------------CCCChHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 008780 477 ------------------NPAHVKGLYR--------RG------------MAYMALGEFEEAQRDFEMMMKVDKSSEPDA 518 (554)
Q Consensus 477 ------------------~p~~~ka~~~--------~g------------~a~~~l~~~~~A~~~~~~al~l~P~~~~~~ 518 (554)
+|.+..-+++ ++ .+|....+|++++..|+.+|+++|.| .-+
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-~~a 259 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN-NKA 259 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-hhh
Confidence 4554443222 34 77888999999999999999999998 456
Q ss_pred HHHHHHHHH
Q 008780 519 TAALSKLKK 527 (554)
Q Consensus 519 ~~~l~~l~~ 527 (554)
+..|..+.+
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 666666655
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.57 E-value=0.0016 Score=61.45 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
...++..|..++..|+|.+|+..+++++...|.+ ..|++.+|.+++..++|++|+..|++.++..|++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4678899999999999999999999999998764 77999999999999999999999999999999984
No 197
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.57 E-value=0.0011 Score=70.05 Aligned_cols=125 Identities=15% Similarity=0.106 Sum_probs=100.4
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH-------------HHHHhhhHH---------HHHHHHHHHHH
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-------------GKVFVGKRN---------LLHLNVAACLL 458 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee-------------~~~~~~~~~---------~~~~nla~~~~ 458 (554)
+.-.+...+..|+...|.....+|.+ ..|++++- .+..+.+.. .+|+.-+....
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 44455778889999999999999998 66666431 122222222 25566666667
Q ss_pred HccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 459 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
-+++.++|+..|+++|+..|+..|.|+.+|+++..+++.+.|+..|...++.-|+. ..++..|.+|..+..
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-IPLWLLLAKLEEKDG 733 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-chHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999987 678888888877764
No 198
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.56 E-value=0.00046 Score=49.33 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
.++|.+|.+++.+|+|++|+...+.+|+++|+| ..+..+...++.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N-~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN-RQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHH
Confidence 467888889999999999999999999999988 45555555554444
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.0011 Score=59.05 Aligned_cols=68 Identities=7% Similarity=-0.118 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
....+..|.-++..|+|++|...+.-+..+||.|.+-++-+|.|+..+++|++|+..|-.|..++++|
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 44567788888999999999999999999999999999999999999999999999999999998766
No 200
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.52 E-value=0.00021 Score=45.90 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
.+++++|.+++++|+|++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999975
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.51 E-value=0.0015 Score=55.21 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=56.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
.-|.....-++.+.|++.+.++|.+-|.++.+|.++++++...++.++|+.++++|+++.-.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 34666677899999999999999999999999999999999999999999999999999643
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.00016 Score=72.21 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
+......+-+.||.||-.|+|++|+..-+.-|++-+... + +...-.++.|+|.||.-+++++.|+++|+++
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--D-------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--D-------RAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--h-------HHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 344455667889999999999999999888777432211 1 1222568999999999999999999999998
Q ss_pred HhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 474 LDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 474 l~~~------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+.+. ...+..-|-+|.+|..+.+|+.|+.++++-|.+.
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7553 2246678999999999999999999999988774
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0023 Score=60.58 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..++.|.+..|+-.++|..|...+++++..||.++.+..+.|.|++.+|+..+|++.++.++...|..
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999975
No 204
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00095 Score=66.92 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=101.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+.--|..+|..++|..|+.+-.++|+ .++.+ ...+.--|..+..+++..+|+-+++.|..+.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~----~~~r~-----------~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCID----SEPRN-----------HEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhc----cCccc-----------chHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 44556677788888889999998899888 77776 6788888888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhcccccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS-KLKKQRQ-VKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~-~l~~~~~-~~~~~~~~~~y~~~f~~~~~ 550 (554)
|....+|--+-.+|...+++.+|...-+.+++.-|++ ...-..+. .+..-.- -++|++ +.|.+-+...|+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-A~~LtL~g~~V~~~dp~~rEKAK--kf~ek~L~~~P~ 436 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-ARSLTLFGTLVLFPDPRMREKAK--KFAEKSLKINPI 436 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-hhhhhhhcceeeccCchhHHHHH--HHHHhhhccCCc
Confidence 9989998888899999999999998888888888877 22222222 1111111 344555 666666665554
No 205
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00064 Score=66.76 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.8
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHH
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLR 426 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~ 426 (554)
=.|-.+|..|+|++|+..|.-+..
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhc
Confidence 367889999999999999988766
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.46 E-value=0.00075 Score=67.20 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-EEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~-~~A~~~~~~al~l~P~~ 514 (554)
..+++.+|.|++.+|+|++|...+.+++..+|+++.++.++..+...+|+. +.+.+.+.+....+|++
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 345556666666666666666666666666666666666666666666666 44555556555566665
No 207
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.44 E-value=0.00075 Score=74.29 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=88.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH-------------HHh------------hhHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-------------VFV------------GKRNLLHLN 452 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~-------------~~~------------~~~~~~~~n 452 (554)
|..+--.|..|..--+...|..+|++|.+ +++.+.+.++ ... ..+...+..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFe----LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFE----LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 33444556555555567889999999988 7766543211 110 111223445
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+|..|++-+++.+|+..++.||+.+|.+..+|.-+|.||...|+|.-|++.|.+|..++|.+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 88899999999999999999999999999999999999999999999999999999999987
No 208
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.42 E-value=0.00024 Score=45.70 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
++|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57788888888888888888888888888874
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.42 E-value=0.0015 Score=65.47 Aligned_cols=103 Identities=21% Similarity=0.214 Sum_probs=85.4
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN- 477 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~- 477 (554)
.++-+.||.+.-.|+|+.|+++|++++.+...+.... ..+...+.||..|.-+++|.+||.+..+-|++.
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999988544443322 125677889999999999999999999987764
Q ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 478 -----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 478 -----p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
-....+++-+|.+|..+|..+.|+...++++++
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 245789999999999999999999988888876
No 210
>PRK10941 hypothetical protein; Provisional
Probab=97.41 E-value=0.002 Score=63.09 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+....+.|+=.+|++.++|..|+.+++.++.++|+++.-+.-||.+|.+++.+..|+.+|+..++..|++
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999987
No 211
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.40 E-value=0.0012 Score=72.85 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=75.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HH
Q 008780 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VK 532 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~-~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~ 532 (554)
.--++.++|++|++.|+++|+.||+|-.|++.+|.++..+++ .++|...|..|.+++|+| .-+++.|..+.++-. ..
T Consensus 10 k~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn-lLAWkGL~nLye~~~dIl 88 (1238)
T KOG1127|consen 10 KDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN-LLAWKGLGNLYERYNDIL 88 (1238)
T ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh-hHHHHHHHHHHHccchhh
Confidence 334467899999999999999999999999999999999998 999999999999999998 778998988887744 33
Q ss_pred HHHHHHHHHHhhcc
Q 008780 533 LKVRLENSLKGCLT 546 (554)
Q Consensus 533 ~~~~~~~~y~~~f~ 546 (554)
...++...|++.|.
T Consensus 89 ~ld~~~~~yq~~~l 102 (1238)
T KOG1127|consen 89 DLDRAAKCYQRAVL 102 (1238)
T ss_pred hhhHhHHHHHHHHH
Confidence 33344466666554
No 212
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.39 E-value=0.0016 Score=64.94 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=68.0
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH--c--cCHHHHHHHHHHHHhhCCC
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--L--GECRKSIEACNKVLDANPA 479 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k--l--~~~~~A~~~~~~al~~~p~ 479 (554)
.-..+.+.++++.|.+.++.+-+ .+. | .+..++|.++.. . ..+.+|...+++.....+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~----~~e-D------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ----IDE-D------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC----CSC-C------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh----cCC-c------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 34456677777777777766444 322 1 244555554444 3 3699999999998888788
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++..+..++.|++.+|+|++|...+++|+..+|++
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999987
No 213
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.38 E-value=0.0027 Score=67.18 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=51.4
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 481 (554)
...|-.+-..++|++|+.+|+.|+. +.+++ ..++..+|..+.++++|+.....-.+.|++.|.+.
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN-----------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALK----IEKDN-----------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 3344444445555555555555555 55554 44555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
..|+-.+.++..+|++..|...++...+
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554444444
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.37 E-value=0.0049 Score=53.70 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
..-+++.|...++.|+|.+|+..++.+....|- ...|.+.++-+|+..++|++|+..+++-++|+|+|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 456788899999999999999999999998775 477999999999999999999999999999999984
No 215
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.012 Score=55.78 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 493 (554)
+-+|...|+.|+++++++-.+|+.+ ..++-..-.....+|+-.+||+....-|+.-+.+..||..++..|..
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~ddpt~--------~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDDPTD--------TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccCcch--------hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4567777777777777766665332 23344444455567777888888888888889999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccc
Q 008780 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 494 l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~~~~ 549 (554)
+++|+.|.-+|+..+-+.|.| +.....+..+..-+. .+..+--.+.|.+.+...+
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n-~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFN-PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999988 667777777776665 3332222277777766555
No 216
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.28 E-value=0.0061 Score=62.98 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=89.6
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
.++++.|+..+++... .+|. +..-+|.+++.+++..+|+....++|...|.+...+...+..
T Consensus 182 t~~~~~ai~lle~L~~----~~pe--------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRE----RDPE--------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHh----cCCc--------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4568888888877665 4442 344588999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008780 491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKV 535 (554)
Q Consensus 491 ~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (554)
++..++++.|+...++|.++.|++ -..+..|.++......-+.+
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999997 67888888888777633333
No 217
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.22 E-value=0.0013 Score=47.07 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~ 489 (554)
.+++.+|..+.++++|.+|..+|+.+|+++|+|..|.-.+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 478899999999999999999999999999999887665443
No 218
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.21 E-value=0.0048 Score=65.35 Aligned_cols=122 Identities=11% Similarity=-0.011 Sum_probs=91.4
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
.++.++|+++.++||+ ..|. ...+|+.+|..+-.+++.+.|...|..-+..-|+.+-.|..++..
T Consensus 664 ld~~eeA~rllEe~lk----~fp~-----------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALK----SFPD-----------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred hhhHHHHHHHHHHHHH----hCCc-----------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 4445555555555555 3343 378999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 491 ~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
-...|+.-.|+..|.++.--+|.| ...+.+.-++..+..-.+.++ .+..+.+..+|.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~-~~lwle~Ir~ElR~gn~~~a~--~lmakALQecp~ 785 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKN-ALLWLESIRMELRAGNKEQAE--LLMAKALQECPS 785 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCc-chhHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCc
Confidence 999999999999999999999998 455544444444433222222 455555555544
No 219
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.16 E-value=0.0012 Score=68.68 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=90.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 486 (554)
Q Consensus 407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~ 486 (554)
.+-..|+-..|+.+...|+. ..|... ..-..|||...++-+...+|-.++.++|.+.-..+-.+|-
T Consensus 616 ywr~~gn~~~a~~cl~~a~~----~~p~~~----------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~ 681 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALN----LAPLQQ----------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS 681 (886)
T ss_pred eeeecCCcHHHHHHHHHHhc----cChhhh----------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence 33357888999999999998 666542 2457899999999999999999999999999888899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+|.+++.+.+.+.|++.|+.|++++|++ ..+.+-|..+.-
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~-~~~~~~l~~i~c 721 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTKC-PECENSLKLIRC 721 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCCC-hhhHHHHHHHHH
Confidence 9999999999999999999999999998 667766665543
No 220
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0087 Score=54.51 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=82.1
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
.....+.+..++..++++.|....+.++. .+.| ..+...+-.++|.+++.++.+++|+..++..-.-.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~D-------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~ 156 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALA-----QTKD-------ENLKALAALRLARVQLQQKKADAALKTLDTIKEES 156 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHc-----cchh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 44567888899999999999999999997 3443 23445677899999999999999998876643211
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
-.+..-..+|.++...|+-++|+..|++|++.++++
T Consensus 157 -w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 157 -WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred -HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 122335678999999999999999999999998653
No 221
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0035 Score=66.07 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=89.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
-..+++.+..+|+.++|..|++.|...++++ +.| ++. ...+.+.-+++.||+++.+.+.|.+++.+|-+.+
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i----~~D-~~~----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDI----ISD-NYS----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc----cch-hhh----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 3457899999999999999999999999953 333 111 2236788899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
|.++-.-+..-++....+.-++|+.++.+....
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 999999999999999999999999988877664
No 222
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.10 E-value=0.0052 Score=52.36 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHh-hCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008780 447 NLLHLNVAACLLKLGE---CRKSIEACNKVLD-ANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~-~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~ 521 (554)
..+.+|+|.|+.+..+ ..+.+..++..+. -.| ....++|.++..|+.+++|+.|+.+++..|+.+|+| ..+..+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n-~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN-RQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc-HHHHHH
Confidence 5678999999988754 7788888888886 344 356799999999999999999999999999999998 455544
Q ss_pred HHHHHHHH
Q 008780 522 LSKLKKQR 529 (554)
Q Consensus 522 l~~l~~~~ 529 (554)
-..++.++
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 44444444
No 223
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0037 Score=61.61 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=69.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 486 (554)
Q Consensus 407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~ 486 (554)
.+..+.+|.-|+...+-.+. ++ + ||+ ..+-.-+|.|++.+|+|++|+..|.-+.+.+..+.+.+.+
T Consensus 31 dfls~rDytGAislLefk~~----~~--~-EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn 96 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLN----LD--R-EEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN 96 (557)
T ss_pred HHHhcccchhHHHHHHHhhc----cc--h-hhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence 45567788888887766554 22 1 211 3556678999999999999999999999988889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 008780 487 RGMAYMALGEFEEAQRDFEMM 507 (554)
Q Consensus 487 ~g~a~~~l~~~~~A~~~~~~a 507 (554)
+|.|.+-+|.|.+|...-.+|
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998866554
No 224
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.97 E-value=0.0026 Score=58.62 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
++.+++.+|..|-.+|-+.-|...+.++|.+.|.-+.++..+|.-+...|+|+.|.+.|...+++||.++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 5789999999999999999999999999999999999999999999999999999999999999999873
No 225
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.96 E-value=0.00086 Score=43.26 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=30.7
Q ss_pred HHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780 420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (554)
Q Consensus 420 ~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (554)
+|++||+ ++|.+ ..+|+|+|.+|...|++++|+
T Consensus 1 ~y~kAie----~~P~n-----------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIE----LNPNN-----------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHH----HCCCC-----------HHHHHHHHHHHHHCcCHHhhc
Confidence 4899999 99999 889999999999999999986
No 226
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0015 Score=61.01 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=62.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
-+.+++.-++|..|+.+|.+||.++|..+..|-+++.||+.+.+|+.+..+..+|++++|+. ......|...
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~ 87 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQW 87 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHH
Confidence 45667778899999999999999999999999999999999999999999999999999986 4444444443
No 227
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0025 Score=61.35 Aligned_cols=94 Identities=23% Similarity=0.374 Sum_probs=76.6
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.|....+.|..+|+.|+|+.|++.|+.|+. ...-+ ..+-+|+|.||++.++|..|+++..+.++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlq----vsGyq-----------pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQ----VSGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHh----hcCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 466678899999999999999999999999 44433 467899999999999999999999998865
Q ss_pred C----CC----------------C---------hHHHHHHHHHHHHcCCHHHHHHHHH
Q 008780 477 N----PA----------------H---------VKGLYRRGMAYMALGEFEEAQRDFE 505 (554)
Q Consensus 477 ~----p~----------------~---------~ka~~~~g~a~~~l~~~~~A~~~~~ 505 (554)
. |. | ..|+...+.++++.++++.|.+.+.
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 2 21 1 3456667888999999999987653
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.89 E-value=0.0016 Score=41.71 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
.+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999864
No 229
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.016 Score=60.98 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=83.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHH--------------------hhhHHHHHHHHHHHHHH
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF--------------------VGKRNLLHLNVAACLLK 459 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~--------------------~~~~~~~~~nla~~~~k 459 (554)
.+.-+|..+|+.++|++|+..|+..++ -+..+.++.... .+.-..+++|.|..+..
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~k----n~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~ 187 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAK----NNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE 187 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh
Confidence 445688999999999999999998766 333222221100 01123578999999999
Q ss_pred ccCHHHHHHHHHHHHhhC-------CCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 460 LGECRKSIEACNKVLDAN-------PAH--------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 460 l~~~~~A~~~~~~al~~~-------p~~--------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
.|+|.+|++.+.+|+.+. -.+ .-....++.++..+|+.++|...|...++.+|.+.
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 999999999999995431 111 23567789999999999999999999999988663
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.68 E-value=0.015 Score=62.20 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=80.9
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
--+...|..+..+|+.+.|+..|++|+. .. + ...++...+++.++.|++-+.+|++|..++.+.++.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~----~q----~---~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIE----SQ----S---EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcc----ch----h---hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 3456788889999999999999999886 21 1 23445578999999999999999999999999998654
Q ss_pred CChHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 008780 479 AHVKGL--YRRGMAYMALGEF-------EEAQRDFEMMMKVD 511 (554)
Q Consensus 479 ~~~ka~--~~~g~a~~~l~~~-------~~A~~~~~~al~l~ 511 (554)
+.+++ |..|.|+..+++. ++|...|.++-.+-
T Consensus 337 -WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 337 -WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred -cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 55654 4568999999999 88888888776654
No 231
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.65 E-value=0.051 Score=51.46 Aligned_cols=103 Identities=24% Similarity=0.269 Sum_probs=76.2
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhh
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-------CRKSIEACNKVLDA 476 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~~~~~al~~ 476 (554)
.+..+-....+++|+..|.-|+-......... ...+.+++.+|.+|..+++ +..|+..+.++++.
T Consensus 83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 83 KPRDFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33355667789999999999997544333222 1347789999999999998 44555555555554
Q ss_pred CC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 477 ~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.. +....+|.+|..++.+|++++|+.+|.+++..--.+
T Consensus 155 e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 155 EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 32 236789999999999999999999999999865443
No 232
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.63 E-value=0.0034 Score=39.79 Aligned_cols=31 Identities=32% Similarity=0.589 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
|+|++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666666666666666666666666666665
No 233
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.62 E-value=0.018 Score=51.88 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChH
Q 008780 462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF----------EEAQRDFEMMMKVDKSSEP 516 (554)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~----------~~A~~~~~~al~l~P~~~~ 516 (554)
-|+.|.+.+......+|.++.+++|-|.++..+.++ ++|+.-|+.||.++|+...
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd 70 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 378899999999999999999999999999998554 6788899999999998743
No 234
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.089 Score=49.35 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=89.1
Q ss_pred HHHHHHhhhhhhhc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 398 AEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 398 a~~~~~~G~~~~~~-g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
|.-+.+.|..+-.. .++++|+.+|++|-++...-. .......|+...|.....+++|.+|+..|+++..-
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666555 788999999999998654311 12223568888888888899999999999998765
Q ss_pred CCCC------hHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHH
Q 008780 477 NPAH------VKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKLKKQRQVKLKV 535 (554)
Q Consensus 477 ~p~~------~ka~-~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~~~~~~~~~~ 535 (554)
.-+| +|-| +..|.||+...+.-.|...+++..+++|.-. ..--+.|+.|...+...+-+
T Consensus 184 s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e 250 (288)
T KOG1586|consen 184 SLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIE 250 (288)
T ss_pred hccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHH
Confidence 4333 4544 4568888888999999999999999999752 12233455555555433333
No 235
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.015 Score=56.11 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=81.2
Q ss_pred hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 487 (554)
+.+..+|..|+++...-.+ ..|.+ ...+..+|.||+...+|..|..+|.+.-.+.|...+..+..
T Consensus 20 lI~d~ry~DaI~~l~s~~E----r~p~~-----------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELE----RSPRS-----------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred HHHHhhHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3566777888877766666 66655 56788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 488 g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
++.++..+.|.+|++....... + +..+...-+|+..++
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D----~-~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLD----N-PALHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcC----C-HHHHHHHHHHHHHHh
Confidence 9999999999999987765432 2 345555555555554
No 236
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=0.072 Score=54.76 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=106.5
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...|.--..++++..|...|.+||. .+..+ +.+++..|.|-+|.++...|....++|+.+-|.-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALd----vd~r~-----------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALD----VDYRN-----------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh----ccccc-----------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 33445555567889999999999998 55544 7899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
-+.||..-..-..+|+..-|+..|++-++..|+. .++...-+...+.+.-+.++ ..|.+..--+|
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e--qaW~sfI~fElRykeieraR--~IYerfV~~HP 205 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE--QAWLSFIKFELRYKEIERAR--SIYERFVLVHP 205 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhhHHHHHH--HHHHHHheecc
Confidence 9999999988999999999999999999999984 56666666555555455566 78887765544
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.48 E-value=0.1 Score=47.98 Aligned_cols=58 Identities=29% Similarity=0.492 Sum_probs=30.4
Q ss_pred HHHHccCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 456 CLLKLGECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
++...+++..|+..+.+++..+| .....++.++..+...++++.|+..+.+++...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 45555555555555555555444 23444444444455555555555555555555554
No 238
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.45 E-value=0.0048 Score=37.97 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
.+++++|.++..++++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666554
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.43 E-value=0.24 Score=49.14 Aligned_cols=141 Identities=14% Similarity=0.041 Sum_probs=100.1
Q ss_pred CCChhhhhHHHHHHHHhhhhhhhcC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHH
Q 008780 388 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (554)
Q Consensus 388 ~~~~~~~~~~a~~~~~~G~~~~~~g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (554)
.+++......+..+.+.|..+++++ +|..|+...++|.++++.... .+.......+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4566777788999999999999999 999999999999998755211 11112234567789999999999998886544
Q ss_pred HHHHHHHH----hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 467 IEACNKVL----DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 467 ~~~~~~al----~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
.+ |.+++ ...|+.+..++..=.++...++.+++.+.+.+++.--+-.+......+..++....
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~ 170 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE 170 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
Confidence 33 44444 33577677776666666668999999999999888644222345555555544444
No 240
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.058 Score=56.89 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=80.4
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-------------HH---Hhh------hHHHHHHHHHHH
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------KV---FVG------KRNLLHLNVAAC 456 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-------------~~---~~~------~~~~~~~nla~~ 456 (554)
..+...-|.+-+.++|++|+..-.+.+. ..|++.... +. +.+ ......+..|.|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~----~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILS----IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHh----cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHH
Confidence 4566667777788888888888777777 545443210 00 000 011123678999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++++++.++|+..++ -.++...+.+..+|+.++.+++|++|.+.|+...+-+-++
T Consensus 89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 999999999999888 5667778899999999999999999999999998876554
No 241
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.30 E-value=0.0068 Score=56.41 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=58.9
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
..+.++.+.|.+.+.++|++-|.+...|||+|......|+++.|.+.|++.|+++|.+...+...|..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~ 72 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAV 72 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHh
Confidence 44678899999999999999999999999999999999999999999999999999874333333333
No 242
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.29 E-value=0.0083 Score=39.17 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+|.++|.+|..+|+|++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57888999999999999999999966553
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.16 Score=49.51 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=84.3
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH------
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK------ 472 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~------ 472 (554)
+.....+..+...+++..|...|..++. ..|.+ ..+...+|.||...|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~-----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQ----AAPEN-----------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 3456778889999999999999999999 66665 45777788888888887665544433
Q ss_pred ----------------------------HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 008780 473 ----------------------------VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALS 523 (554)
Q Consensus 473 ----------------------------al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~ 523 (554)
.+..||++..+-+.+|..+...|++++|.+.+-..++.|-+.+ ..+++.|-
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 1244799999999999999999999999999988888754321 23454444
Q ss_pred HH
Q 008780 524 KL 525 (554)
Q Consensus 524 ~l 525 (554)
.+
T Consensus 280 e~ 281 (304)
T COG3118 280 EL 281 (304)
T ss_pred HH
Confidence 43
No 244
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.28 E-value=0.0056 Score=62.99 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=60.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+-+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|++++...++|..|+.++.+|++++|..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 44556667788999999999999999999999999999999999999999999999999999965
No 245
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.28 E-value=0.31 Score=49.25 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (554)
.+...+......|-.-+-.|+|.+|.+...++-+ -.+.. ..+|.--|.+...+|+++.|=.+..+
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae----~~e~p-----------~l~~l~aA~AA~qrgd~~~an~yL~e 143 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE----HGEQP-----------VLAYLLAAEAAQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----cCcch-----------HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4556777888888888899999999999888766 22111 33445555556666666666666666
Q ss_pred HHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 473 VLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 473 al~~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+-+..+ ...-++..++..+...+++..|...+.++++..|.+
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~ 186 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH 186 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC
Confidence 666522 234455556666666666666666666666666665
No 246
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.27 E-value=0.0073 Score=38.17 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+++++|.|+.++|++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999999999974
No 247
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.17 Score=47.49 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=81.6
Q ss_pred hhHHHHHHHHh-hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780 394 IMDEAEKIRVT-GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 394 ~~~~a~~~~~~-G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (554)
+.+.|..+..+ ||.+--+++|..|-..|-+|.++.-.....++ ...+|...+.||.+. +..+|+.++.+
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhD---------aat~YveA~~cykk~-~~~eAv~cL~~ 98 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHD---------AATTYVEAANCYKKV-DPEEAVNCLEK 98 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence 44455555444 45555688999999999999886544444332 367888889998666 99999999999
Q ss_pred HHhhCCC------ChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 008780 473 VLDANPA------HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 473 al~~~p~------~~ka~~~~g~a~~~-l~~~~~A~~~~~~al~l~P~ 513 (554)
++++--+ -++-++-+|..|.. +.+++.|+.+|++|-+.-..
T Consensus 99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 9988532 35556677777776 48999999999999987544
No 248
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.033 Score=54.72 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
+.-|-.-|.-|++.++|..|+..|.+.|+.... |+-.|.+||.|++.+|+|..|+.+..+|+.++|.+-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 344556688899999999999999999988643 566899999999999999999999999999999984
No 249
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.13 Score=53.44 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 008780 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL 494 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l 494 (554)
..-...|++|+. ..+.| ..++++...-..+.+.|.+.-..|.++|..+|+++..|...|.-.+..
T Consensus 88 ~rIv~lyr~at~----rf~~D-----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~ 152 (568)
T KOG2396|consen 88 NRIVFLYRRATN----RFNGD-----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI 152 (568)
T ss_pred HHHHHHHHHHHH----hcCCC-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh
Confidence 344667888887 55555 678888777777778899999999999999999999999999999998
Q ss_pred CC-HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 495 GE-FEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 495 ~~-~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
+. .+.|++.|.++|+.+|++ +.++.+.-+
T Consensus 153 n~ni~saRalflrgLR~npds-p~Lw~eyfr 182 (568)
T KOG2396|consen 153 NLNIESARALFLRGLRFNPDS-PKLWKEYFR 182 (568)
T ss_pred ccchHHHHHHHHHHhhcCCCC-hHHHHHHHH
Confidence 86 999999999999999998 566655433
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.19 E-value=0.015 Score=57.72 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=83.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|+++...+.|++|++.|++|+++-...+.. -+...++..++..+-++++|++|+-+..+|+++-..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 34458999999999999999999999975443221 122568889999999999999999999999987421
Q ss_pred ----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 480 ----------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 480 ----------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
..-++|+++.++..+|+.-.|.++.+.|.++
T Consensus 195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2347899999999999999999999999886
No 251
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.16 E-value=0.0089 Score=39.01 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
++.+||.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999996654
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.10 E-value=0.11 Score=47.97 Aligned_cols=94 Identities=31% Similarity=0.541 Sum_probs=74.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhhccCCC-ChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-ChHHH
Q 008780 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQ-DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVKGL 484 (554)
Q Consensus 407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~-~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-~~ka~ 484 (554)
.++..+++..|+..|.+++. ..+. .. ....+.+++..+...+++..|+..+.+++...+. ...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALE----LDPELNE---------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh----cCCCccc---------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH
Confidence 78889999999999999966 4442 10 1344555555577888899999999999988888 68888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 485 ~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
..++.++...++++.|+..+.+++...|.
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 88999999988999999999999888886
No 253
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.06 E-value=0.03 Score=54.37 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 516 (554)
+.+-.+.|.-..+.|+.++|...+..||+++|.++.++.+.|+....-++.-+|-.+|-+||.++|.|..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4455677777889999999999999999999999999999999999999999999999999999999843
No 254
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.02 E-value=0.11 Score=53.41 Aligned_cols=139 Identities=15% Similarity=0.084 Sum_probs=97.5
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (554)
++....-|..+.-.+....++.+...|.+..-.|+. ..|.+ .++-..-..-+++++++.|...|
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~------------KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKD------------KLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCch------------hHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444556666666667777777778777777777 56654 22222333455789999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKLKKQRQVKLKVRLENSLKGCLTR 547 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~ 547 (554)
.+-|+..|.|..+|...|..-..||+.+.|++.|+-|+....-+. .-+++..-...-....-++++ +.|.+++..
T Consensus 461 Ekfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR--~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR--ALYERLLDR 536 (677)
T ss_pred HHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH--HHHHHHHHh
Confidence 999999999999999999999999999999999999997543221 123333333333333455666 788887764
No 255
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.01 E-value=0.26 Score=53.06 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=87.3
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+.-.+..+-..|++++|+...++||+ ..|.. +.+|+..|.++.++|++.+|..+.+.|-.+|+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~-----------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE----HTPTL-----------VELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 456677788889999999999999999 77876 789999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+.-.--..+..+++.|+.++|...+..-.+-+
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 88888888999999999999999888776654
No 256
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.01 E-value=0.15 Score=56.33 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=74.1
Q ss_pred hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 487 (554)
....++|..|+..-.+.++ -.|+. ..+..--|..+.++|++++|....+..-...+++-..+-.+
T Consensus 19 ~ld~~qfkkal~~~~kllk----k~Pn~-----------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l 83 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLK----KHPNA-----------LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL 83 (932)
T ss_pred HhhhHHHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH
Confidence 4456778888888888888 67765 34555668889999999999954444444566788889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 488 GMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 488 g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
-.+|..++++++|...|++++.-+|+
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 99999999999999999999999998
No 257
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.98 E-value=0.012 Score=36.15 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
.+++++|.|+..++++.+|+.++.+++.++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998853
No 258
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.18 Score=48.29 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 450 HLNVAACLLKL----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 450 ~~nla~~~~kl----~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+..||.+|.++ +.+.+|.-.|++.-+.-|..+..+.-++.|++.+++|++|...++.||.-++++
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 33344444443 346666666666555455556666666666666666666666666666666555
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.97 E-value=0.1 Score=54.35 Aligned_cols=125 Identities=12% Similarity=0.101 Sum_probs=87.8
Q ss_pred CCCCChhhhhHHHHHHHHhhhh----h--h---hcCCHHHHHHHHHHHHHHhhccCCCCh------hHHHH----HhhhH
Q 008780 386 WTGLSFDGIMDEAEKIRVTGNR----L--F---KEGKFELAKAKYEKVLRDFNHVNPQDD------EEGKV----FVGKR 446 (554)
Q Consensus 386 ~~~~~~~~~~~~a~~~~~~G~~----~--~---~~g~~~~A~~~Y~~al~~l~~~~p~~~------ee~~~----~~~~~ 446 (554)
|.+-+++.+++.|....+.-.. | . ......+|.+.|++|++.-+..-..+. ...+. .....
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 4456777888777765544332 1 2 233468999999999986433211110 01111 11123
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
..+...+|.|..++|+.++|++.++..++..|. +...++++-.+++.+++|.++.+.+.+.=.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 456678999999999999999999999988775 6779999999999999999999999987544
No 260
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.93 E-value=0.16 Score=50.48 Aligned_cols=129 Identities=8% Similarity=0.019 Sum_probs=88.6
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCh
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHV 481 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~~p~~~ 481 (554)
...+..-+.+..+.|...|.+|+. ..... ..+|...|..-+. .++.+.|...++.+++.-|.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~----~~~~~-----------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARK----DKRCT-----------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----CCCS------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhCChHHHHHHHHHHHc----CCCCC-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 334444555558899999999975 33322 4577777887556 5777779999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQ-VKLKVRLENSLKGCLT 546 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~ 546 (554)
..|.....-+..+++.+.|+..|++++..-|... ..++....+.+.+.. .+.-.++.+.+..+|.
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999877642 235554445544443 2333333333444443
No 261
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.73 E-value=0.12 Score=50.29 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=73.1
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
....|......+....+.|+.++|...|..|+. +.|.+ ..++..+|...-..++.-+|-.+|-+|
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~-----------p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTN-----------PQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCC-----------HHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 345566666777888899999999999999999 89988 678888888888888999999999999
Q ss_pred HhhCCCChHHHHHHHHHHH
Q 008780 474 LDANPAHVKGLYRRGMAYM 492 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~ 492 (554)
|.++|.|.+|+.++++..-
T Consensus 177 LtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 177 LTISPGNSEALVNRARTTP 195 (472)
T ss_pred eeeCCCchHHHhhhhccch
Confidence 9999999999999987653
No 262
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.70 E-value=0.19 Score=58.61 Aligned_cols=102 Identities=16% Similarity=0.055 Sum_probs=72.5
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-- 478 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-- 478 (554)
....|..+...|++++|...|.+++.......... ....++.++|.+++..|++.+|...+.+++.+-.
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~---------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH---------YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 34455556667777777777777766433222111 1234678899999999999999999999987621
Q ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 479 ------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 479 ------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
.....+..+|.++...|++++|...+.+++.+.
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 123345678899999999999999999998863
No 263
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.67 E-value=0.18 Score=50.84 Aligned_cols=112 Identities=22% Similarity=0.193 Sum_probs=76.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
....-..+..+...|++++|.+.-..+++ - ..|+ .++.- .-..+.+++..=+...++.+...
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk----~-~~D~-----------~L~~~--~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALK----R-QWDP-----------RLCRL--IPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHH----h-ccCh-----------hHHHH--HhhcCCCCchHHHHHHHHHHHhC
Confidence 33444566777788889999888888887 1 2221 11111 11235677788888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
|+++..++.+|+.++..+.|.+|...|+.|++.-|+. .....+...-.+.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~ 374 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQL 374 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHc
Confidence 8888888888888888888888888888888887764 3444555444443
No 264
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.66 E-value=0.063 Score=56.46 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=84.5
Q ss_pred HHHhhhhhh-hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 401 IRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 401 ~~~~G~~~~-~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
+...+..|+ .+|+..+|+.+|..|+.+ .+..- ...+++.+|..+.++|...+|--.+..|+.-.|.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf----~~~h~---------kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHF----SSRHN---------KDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhh----CCccc---------ccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 344555555 488999999999999984 33221 1357788999999999999998888888888887
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 516 (554)
-..-+|-+++++.+++.|.....+|..|.+.+|....
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 7777999999999999999999999999999997643
No 265
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.62 E-value=0.33 Score=57.02 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
.|+.+..+|.+.|++++|+..+++..+.+ +.+...|..+..+|...|++++|+..|++..+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 45556666667777777777777766655 345566666666677777777777766666654
No 266
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.61 E-value=0.33 Score=56.96 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
.|+.+..+|.+.+++++|...+.++++.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555432 22455555556666666666666666655543
No 267
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=95.60 E-value=0.09 Score=44.04 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=78.3
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH----Hh
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV----LD 475 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a----l~ 475 (554)
++...|+..++.+++-.|+-+|++|+...+.+...++.+.+.+.-..+....|||..+..+|+-+-.+++.+-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999987777544444444445555667789999999999999999887654 55
Q ss_pred hCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a-~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
+-|..+..- ..+ .-.+|--..|+-+| ++..|+ +.+.+.++.
T Consensus 83 LiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN--P~iA~~vq~ 124 (140)
T PF10952_consen 83 LIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN--PEIARLVQH 124 (140)
T ss_pred hccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC--HHHHHHHHh
Confidence 555433211 111 12344444555554 456786 445444443
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.60 E-value=0.088 Score=50.35 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
..-+++-|...++.|+|.+|+..++.+....|. ..++...++.+++..++|++|+..+++-+++.|++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 567889999999999999999999999988765 478999999999999999999999999999999884
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.56 E-value=0.073 Score=52.96 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=86.8
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--- 477 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~--- 477 (554)
....|..+-+.++|++|+-+-.+|++..+...-.+- -.+.+..+++.+|.++.++|+.-+|.++|+++.++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~-----~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW-----SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch-----hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 345677777888999999999999998776654441 134456788999999999999999999999998763
Q ss_pred ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 478 ---PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 478 ---p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+-.+.++.-+|.+|...|+.+.|..-|+.|+...
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 4467788889999999999999999999998864
No 270
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.55 E-value=0.13 Score=42.54 Aligned_cols=103 Identities=13% Similarity=0.192 Sum_probs=71.6
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHH----HHccCHHHHHHHHHHHHhhCCC
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~----~kl~~~~~A~~~~~~al~~~p~ 479 (554)
++..+|++|++-+|++.-+..+. ....+...+ .+..+...++..+|.-- .+..-...+++++.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHH----HccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 56789999999999999999888 555442211 22222333333333211 1112256788888999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
.+..+|.+|.=+-....|+++....+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 98899999888888888888888888888763
No 271
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.34 E-value=0.27 Score=56.94 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKLK 526 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~ 526 (554)
.+|..|+-.|.+-+.+++|.+.++..++.-....+.|...|..++..++-++|...+++||+--|..+ .++..-...|.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 35677888888999999999999999988778899999999999999999999999999999988731 22333333444
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
-+....++.| ..|.+++..+|
T Consensus 1611 Fk~GDaeRGR--tlfEgll~ayP 1631 (1710)
T KOG1070|consen 1611 FKYGDAERGR--TLFEGLLSAYP 1631 (1710)
T ss_pred hhcCCchhhH--HHHHHHHhhCc
Confidence 3333445555 67777776654
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.2 Score=47.44 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=68.8
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH----hhC
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL----DAN 477 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al----~~~ 477 (554)
.+++-.....-+.+.|+..|++++..+..-+ .......++...+..+.+++.|.+|-..+.+-. +.+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~d---------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDD---------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 3444445555566777777777777543211 122335677888889999999999888777643 223
Q ss_pred --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 --PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 --p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+.--+++.-.-.+|+...+|..|..+|+...++..-+
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~ 223 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL 223 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence 3344556555566666779999999999988875433
No 273
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.27 E-value=0.35 Score=43.94 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~-~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..-.+.||.....+|++.+|..+|.+++. +-.+++..+.-++++.+.++++.+|...+++..+.+|.-
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 34567889999999999999999999996 567889999999999999999999999999999998753
No 274
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.64 Score=44.70 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR-DFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~-~~~~al~l~P~~ 514 (554)
..+++.+|.|++.+++|++|....+.+|..+++++..+-++-.+-..+|.-.++.. .+.+....+|.+
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 46788899999999999999999999999999999999999999999998877765 455566667876
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.21 E-value=0.32 Score=44.65 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=78.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
-..+.++|+.+++.|+++.|++.|.++.+++.. ......+++++..+.+-.++|..+..+..+|-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999998885322 12346788899999999999999999999987653
Q ss_pred C--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 478 P--AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 478 p--~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
. .+ .+.....|.+++..++|..|...|-.++.-.
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2 22 2234456778888899999998887765433
No 276
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.19 E-value=0.53 Score=48.49 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008780 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507 (554)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~a 507 (554)
|.-++..|+|.+|..++.-+.+++| ++.++..+|.|++...+|++|..++.+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4456678999999999999999999 9999999999999999999999988743
No 277
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.14 E-value=0.22 Score=58.06 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=80.7
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-- 478 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-- 478 (554)
+...|..++..|++..|...+.+++.......... ......++.++|.++...|++++|...+.+++.+..
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ-------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 34567788899999999999999998654432111 001134567889999999999999999999987632
Q ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 479 ---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 479 ---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
....++..+|.++...|++++|...+.+++.+.+
T Consensus 607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2356777799999999999999999999987643
No 278
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.12 E-value=0.18 Score=56.98 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
...|..+..++.+.|+++.|...++++++++|++...|..+..+|...|++++|.+.++...+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3467777778888999999999999999999999999999999999999999999998887754
No 279
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=94.99 E-value=0.13 Score=53.18 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=71.7
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc--C-----HHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--E-----CRKSI 467 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~--~-----~~~A~ 467 (554)
+.......+.|-.+|..|+|.+|+..|+.+|..+--+.-.+.++..+++++...|.-.+-.+.+.+. . .++..
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 4445556678999999999999999999999876555555556666666666655443333333221 1 22222
Q ss_pred HHHHHHH-----hhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 468 EACNKVL-----DANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 468 ~~~~~al-----~~~p~~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+.++-+. .+.|.+.- +|..--...+++++|.-|....++.|++.|..
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3333222 22333322 33333345567899999999999999999986
No 280
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.96 E-value=0.036 Score=57.04 Aligned_cols=121 Identities=15% Similarity=0.076 Sum_probs=81.7
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-h-
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A- 476 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-~- 476 (554)
..+.-+.+..|-.|+|..|.+.....--. ..+.- ...-+-....+++|+|..+++++.|.-+..++.+||+ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~---~~~g~---~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIH---KEAGG---TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccc---cccCc---cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 34455566666667766666554331110 11110 0011122345679999999999999999999999995 1
Q ss_pred -------C---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 477 -------N---------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 477 -------~---------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
. ......+|++|..+...|+.-.|.++|.+|...--.| +.+|-.|.++-
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAEcC 379 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAECC 379 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 1 2356689999999999999999999999999986666 55666555543
No 281
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.93 E-value=0.31 Score=39.20 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHH
Q 008780 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKLKKQRQ 530 (554)
Q Consensus 466 A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~l~~~~~ 530 (554)
.+..+++.++.+|++..+.|.+|.+++..|++++|++.+-.+++.+++.. ..+++.+-.+=....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 45678889999999999999999999999999999999999999987652 345555555444443
No 282
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.21 Score=48.33 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.....+..|+=..++..++|+.|..+.++.+.++|.++..+--+|.+|.+++.+.-|+.++...++.-|++
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 34466788888899999999999999999999999999999999999999999999999999999998886
No 283
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.90 E-value=0.23 Score=38.34 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=55.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+....++|-.+|.+.+..+|+..+++||+ ..+..+ .+..++--++.+|...|+|.+++.++.+=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~----k~~~~~--------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALE----KITDRE--------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh----hcCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999 333321 24667778888999999999999998776654
No 284
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.85 E-value=0.013 Score=57.77 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=54.0
Q ss_pred HHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 458 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+..|.++.|+.+|..++.++|.++..|-.|+.+++.+++...|++++..|++++|+.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 346779999999999999999999999999999999999999999999999999976
No 285
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.79 E-value=0.049 Score=56.09 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=75.9
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHH-HhhccCCC-Chh-HHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHVNPQ-DDE-EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~-~l~~~~p~-~~e-e~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
.+..+.+.|..+|+.+.|..++.+|.+||+ .+..+... ... ...........+++|.|..|+..|+...|..++.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 445567899999999999999999999995 44333211 000 001112223568999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHc
Q 008780 474 LDANPAHVKGLYRRGMAYMAL 494 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~l 494 (554)
...-..|+..|.|++.|++..
T Consensus 362 v~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999999864
No 286
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.76 E-value=0.35 Score=40.49 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=58.7
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
+-.+--....+...|+|++++..-.+||.|++....-++++.+. .+.+-+++|.++..+|+.++|+..++.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl----WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL----WIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45566777888899999999999999999999865555455443 3677899999999999999999999988654
No 287
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.64 Score=44.56 Aligned_cols=101 Identities=16% Similarity=0.298 Sum_probs=80.1
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA---- 476 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~---- 476 (554)
.....+.+...+.|.-.+..|.+.++ .+|.. ...+...++...++.|+.+.|..+++++-+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~----~~~e~----------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK----YYPEQ----------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH----hCCcc----------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 44566777788888888888888887 34322 1678888999999999999999999965433
Q ss_pred C--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 477 N--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 477 ~--p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
+ ..+.-.+.+.+.+|.-.++|.+|...|.+.+..||.+.
T Consensus 246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 2 34566788888888889999999999999999999873
No 288
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.70 E-value=0.066 Score=35.68 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
..+++|+|.+|..+|+|.+|+.++.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356778888888888888888888777765
No 289
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.58 E-value=0.45 Score=49.69 Aligned_cols=124 Identities=16% Similarity=0.087 Sum_probs=73.7
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHH-----HHHccCHHHHHHHHHHHHhhC-
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC-----LLKLGECRKSIEACNKVLDAN- 477 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~-----~~kl~~~~~A~~~~~~al~~~- 477 (554)
.-....+..+...-++.-++||+ ++|+- +.+|.-||.- .-...-|.+|++..+.++..+
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe----i~pdC-----------AdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE----INPDC-----------ADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH----hhhhh-----------hHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhh
Confidence 34456778888899999999999 55543 2333333221 011111333333333333221
Q ss_pred ---------------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHH-HHHHHHHH
Q 008780 478 ---------------PA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLKKQRQ-VKLKVRLE 538 (554)
Q Consensus 478 ---------------p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~~l~~l~~~~~-~~~~~~~~ 538 (554)
.. ..-+-+|+|.|..++|+.++|++.++..++..|.. ...++..|-.+-..++ +.+.+++.
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 11 24456789999999999999999999999988763 3445655555544444 55555444
Q ss_pred HHHH
Q 008780 539 NSLK 542 (554)
Q Consensus 539 ~~y~ 542 (554)
+.|.
T Consensus 319 ~kYd 322 (539)
T PF04184_consen 319 AKYD 322 (539)
T ss_pred HHhc
Confidence 4454
No 290
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.55 E-value=0.39 Score=54.30 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=79.7
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC---------------hhHHH-HHhhhH--------HHHHHHHH
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD---------------DEEGK-VFVGKR--------NLLHLNVA 454 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~---------------~ee~~-~~~~~~--------~~~~~nla 454 (554)
..+......|.+.|++++|+..|++.++. .+.|+. -++.. .+..+. ...|..+.
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 34566777777888888888888876541 112211 11111 111111 12566777
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|++ ......|..+..+.
T Consensus 470 ~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~y~~L~~~y~~~ 541 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhC
Confidence 7888888888888877654 2334 46678888888888899999999888888888876 33344444444333
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.54 E-value=0.21 Score=48.40 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=65.0
Q ss_pred CChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (554)
Q Consensus 434 ~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 508 (554)
+-+++.+.+..+...++.-.|..|+..+.+.+|+..|++++.++|-+...+.-+-+.+..+|+--.|++.|++.-
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334456667777788888899999999999999999999999999999999999999999999888888777653
No 292
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.15 E-value=0.18 Score=52.04 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHH
Q 008780 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG-MAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAA 521 (554)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g-~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~~ 521 (554)
...+..++.+|.||+.+++|.+|++.+..+|..-......+..+. +--.-.+..|.....+--++.+.|.. +..+...
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~ 240 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQ 240 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 344678999999999999999999999998864321111122221 22222456677777888888888852 1233333
Q ss_pred HHHH-HHHHH-HHHHHHHHHHHHhhccccccccC
Q 008780 522 LSKL-KKQRQ-VKLKVRLENSLKGCLTRSLGKFL 553 (554)
Q Consensus 522 l~~l-~~~~~-~~~~~~~~~~y~~~f~~~~~~~~ 553 (554)
+++- ..+.. -++... ..|..+|....=+|+
T Consensus 241 lkeky~ek~~kmq~gd~--~~f~elF~~acPKFI 272 (404)
T PF10255_consen 241 LKEKYGEKMEKMQRGDE--EAFEELFSFACPKFI 272 (404)
T ss_pred HHHHHHHHHHHHHccCH--HHHHHHHHhhCCCcc
Confidence 3322 11111 111122 678888887654543
No 293
>PLN03077 Protein ECB2; Provisional
Probab=94.04 E-value=1.1 Score=52.20 Aligned_cols=124 Identities=16% Similarity=0.112 Sum_probs=70.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCCh---------------hHH-HHHhhhH--------HHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------------EEG-KVFVGKR--------NLLHLNV 453 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~---------------ee~-~~~~~~~--------~~~~~nl 453 (554)
...+......+.+.|+.++|+..|++..+ ..+.|+.. ++. +.+..+. ...|..+
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVE--SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 34577788888899999999999998665 11233321 111 1111111 1245556
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
..++.+.|++++|...+++. .+.| ++..|-.+-.++..-++.+.|....+++++++|++ ......|..+.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~y 701 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYILLCNLY 701 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHH
Confidence 66666666666666666553 2344 34455555555556666666666666666666665 34444444443
No 294
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.00 E-value=0.34 Score=41.59 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~ 487 (554)
-.+.+.||..|+++++|+.++.+++..|+.+|+|..|.-..
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 46888999999999999999999999999999998876543
No 295
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.32 Score=48.08 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~ 506 (554)
++--.|.|+...|-|.+|...+++++++++.+..|...++-++...+++.++.+...+
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 4445688999999999999999999999999999999999999999999888876543
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.89 E-value=0.46 Score=46.57 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=66.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 439 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 439 ~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
...+.+....++..++..+...++++.++...++.+..+|-+-++|.++-.+|+..|+...|+..|++.-++
T Consensus 145 R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 145 RRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345667778999999999999999999999999999999999999999999999999999999999988773
No 297
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=1.6 Score=40.09 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhH------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CChH--
Q 008780 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKR------NLLHLNVAACLLKLGECRKSIEACNKVLDANP-AHVK-- 482 (554)
Q Consensus 412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~------~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-~~~k-- 482 (554)
.+...|...|.+++..++.-.|......+.+.... ....+.+|..+...+++++|+..++.++..-. .+.+
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 34558899999999877654553333333333222 12345677788889999999999999996543 2444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccc
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL-SKLKKQRQVKLKVRLENSLKGCLTR 547 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l-~~l~~~~~~~~~~~~~~~y~~~f~~ 547 (554)
+-.|+|.++..++.+++|+..+...-. ++- ......+ ..+-..+...+.++ +.|++....
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w-~~~~~elrGDill~kg~k~~Ar--~ay~kAl~~ 188 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKE--ESW-AAIVAELRGDILLAKGDKQEAR--AAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcccc--ccH-HHHHHHHhhhHHHHcCchHHHH--HHHHHHHHc
Confidence 567899999999999999998775432 111 1112222 22222222444555 677776655
No 298
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.83 E-value=0.11 Score=34.21 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
.+|.++|.+.+...+|++|+.+|++||++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999986
No 299
>PLN03077 Protein ECB2; Provisional
Probab=93.82 E-value=0.85 Score=52.97 Aligned_cols=108 Identities=12% Similarity=0.145 Sum_probs=56.2
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHH----hhc-----cCCCChhHH-HHHhhhH-------HHHHHHHHHHHHHccCHHH
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRD----FNH-----VNPQDDEEG-KVFVGKR-------NLLHLNVAACLLKLGECRK 465 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~----l~~-----~~p~~~ee~-~~~~~~~-------~~~~~nla~~~~kl~~~~~ 465 (554)
..-+.|.+.|++++|...|+.. .. ++. ......++. +.+.++. ...+..+-.++.+.|++++
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 4456777899999999888764 10 000 000111111 1111111 1123334445556666666
Q ss_pred HHHHHHHHHhh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 466 SIEACNKVLDA---NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 466 A~~~~~~al~~---~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
|...++...+. .| +...|.-+..++...|++++|.+.+++. .+.|+
T Consensus 608 a~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 608 GLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 66666665532 23 4456666667777777777777766653 34554
No 300
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.54 E-value=0.47 Score=41.79 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=51.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+...+..+...|++..|+..+++++. .+|.+ -.+|..+-.||..+|++.+|+..|.++.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~----~dP~~-----------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALA----LDPYD-----------EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45567777888899999999999999999 89988 4688889999999999999999987764
No 301
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.49 E-value=0.95 Score=52.73 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
...|...|..+++..+-+.|.....+||.--|. +.+..-.-|+.-+..|+-+.++..|+-.|.-+|.- .++|..+-.
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYid 1642 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYID 1642 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHHH
Confidence 467888999999999999999999999999887 88888889999999999999999999999999985 677776655
Q ss_pred HHHHH
Q 008780 525 LKKQR 529 (554)
Q Consensus 525 l~~~~ 529 (554)
...++
T Consensus 1643 ~eik~ 1647 (1710)
T KOG1070|consen 1643 MEIKH 1647 (1710)
T ss_pred HHHcc
Confidence 55443
No 302
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=1.6 Score=43.34 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=76.0
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-C
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-N 477 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-~ 477 (554)
+.....+..++.+|++.+|...+.+.|. -.|.| ..+..-.-.+|+-+|+...-.....+++-. +
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~----d~PtD-----------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn 168 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLD----DYPTD-----------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN 168 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHH----hCchh-----------hhhhhhhhhHHHhccchhhhhhHHHHhccccC
Confidence 3445667778899999999999999988 56665 222222334555677888888888888876 5
Q ss_pred CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++- .-.+=..+.++.+.|-|++|.+.-++|+++||.+
T Consensus 169 ~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 169 ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence 544 3344446788999999999999999999999987
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.27 E-value=1.4 Score=44.84 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=79.5
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHH-Hhhcc-CCCChh-----------------HHHHHhhhHHHHHHHHHHHHHHc
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV-NPQDDE-----------------EGKVFVGKRNLLHLNVAACLLKL 460 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~-~l~~~-~p~~~e-----------------e~~~~~~~~~~~~~nla~~~~kl 460 (554)
...+.++.++.+|+..+|+...+..+. .+... .+.... ...........+++-+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 345667777777788888888888777 33321 100000 01122344567777778777777
Q ss_pred ------cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008780 461 ------GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-----------------EEAQRDFEMMMKVDKS 513 (554)
Q Consensus 461 ------~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~-----------------~~A~~~~~~al~l~P~ 513 (554)
+.+++++..+.+++.++|.+.++|++.|..+..+-+. ..|+..|-+|+.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8899999999999999999999999999988775332 3377778888888776
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=2.2 Score=40.61 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=71.0
Q ss_pred HHHHHHh-hhhhhhcCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 398 AEKIRVT-GNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 398 a~~~~~~-G~~~~~~g~~~~A~~~Y~~al~~l~~~-~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
+..+..+ ++.+-..++|++|..+..+|.+..+.. .+.+ .+..|-..++....+..|.++..++++|..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh----------AAKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH----------AAKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333444 444556788899988888888754332 2222 245677777888888999999999999987
Q ss_pred hC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 476 AN-----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 476 ~~-----p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
+. |+-+..-.-++--....-+.++|+..|++++.+--
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 63 44344344444445566788999999999988743
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.19 E-value=6 Score=35.36 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=84.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+.+......+.++.+.+...+...-- +.|.. ..+-.--|..++..++|.+|+..++.+.+-.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv----LRP~~-----------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV----LRPEF-----------PELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH----hCCCc-----------hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44566666777777788887776654333 77776 4566677888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|..+-+--.++.|+..+++.+-=. +-..+++..++ +.+...++.+..+..
T Consensus 75 ~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~~d--~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDPSWRR-YADEVLESGAD--PDARALVRALLARAD 124 (160)
T ss_pred CCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcCCC--hHHHHHHHHHHHhcc
Confidence 988877777899999999886543 34557776664 456666666655443
No 306
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.16 E-value=0.49 Score=47.99 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=78.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-- 477 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-- 477 (554)
.+.+.|..|...|+++.|+++|.++-+|+.+. +..+..+.|+-.+-.-+++|.....+..+|...-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 45678889999999999999999988876442 2236678888888889999999999888887651
Q ss_pred ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780 478 ------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (554)
Q Consensus 478 ------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 508 (554)
.-.++.....|.+++.+++|..|.+.|-.+-
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1246778889999999999999999886654
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.04 E-value=0.22 Score=33.02 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+.++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457899999999999999999999999986
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.79 E-value=1.4 Score=43.63 Aligned_cols=100 Identities=16% Similarity=0.276 Sum_probs=73.6
Q ss_pred hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhh----CC---C
Q 008780 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA----NP---A 479 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~----~p---~ 479 (554)
..++|+++.|..+|.|+-...+...|.. ....+..++|.|...++.+ +|+.|+.+.++|+++ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHH-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 4678999999999999988655444443 2334788999999999999 999999999999987 21 1
Q ss_pred -------ChHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC
Q 008780 480 -------HVKGLYRRGMAYMALGEFEEAQR---DFEMMMKVDKSS 514 (554)
Q Consensus 480 -------~~ka~~~~g~a~~~l~~~~~A~~---~~~~al~l~P~~ 514 (554)
..+.+..++.+|...+.++...+ .++.+-.-.|+.
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~ 120 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK 120 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC
Confidence 24567788999999887765444 333333334554
No 309
>PRK10941 hypothetical protein; Provisional
Probab=92.72 E-value=1.1 Score=43.99 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=67.4
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
.-+.+.-..+.+.++|..|+++-+..+. +.|++ ..-+-.+|.+|.+++.+..|+..++.-++..|
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~d-----------p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQ----FDPED-----------PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3456677788899999999999999999 89998 44556789999999999999999999999999
Q ss_pred CChHHHHHHHHHHH
Q 008780 479 AHVKGLYRRGMAYM 492 (554)
Q Consensus 479 ~~~ka~~~~g~a~~ 492 (554)
+.+.+..-+.+...
T Consensus 247 ~dp~a~~ik~ql~~ 260 (269)
T PRK10941 247 EDPISEMIRAQIHS 260 (269)
T ss_pred CchhHHHHHHHHHH
Confidence 99888776665543
No 310
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.71 E-value=0.26 Score=48.14 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~-~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~ 523 (554)
..+|...+.-..+.+.|.+.-..|.+++..+|.|+..|.. .+.-+...++++.|++.|.++|+++|.+ +.+|.+.-
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~-p~iw~eyf 183 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS-PRIWIEYF 183 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC-chHHHHHH
Confidence 4677777777778889999999999999999999999988 6777888999999999999999999998 55555433
No 311
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.69 E-value=1.3 Score=51.02 Aligned_cols=100 Identities=13% Similarity=0.225 Sum_probs=73.4
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHh
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSIEACNKVLD 475 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-------~~~~~A~~~~~~al~ 475 (554)
.-.+++...+.|++|+..|++... ..|.-.|-. .+.+.+|...+.. ..+.+|+.-+++. .
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 546 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRE----SFPGRKEGY--------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-H 546 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhh----cCCCcccch--------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-c
Confidence 445667778899999999999887 667654432 2334444444332 2477777777663 3
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
--|.-+--|.-.|.+|..+++|++-+++|.-|++.-|++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 3466777888899999999999999999999999999883
No 312
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.60 E-value=1.9 Score=46.14 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.-.++..|..+...|+.++|+..+++++..... ..-++|.+|-+++.+.+|++|..+|.+.++.+.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS 338 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH
Confidence 557788999999999999999999999854332 34578999999999999999999999999976543
No 313
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.46 E-value=1.6 Score=35.15 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 417 A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
.+...++++. .+|.+ ..+.+.+|.+++..|+|++|++.+-.++..++++
T Consensus 7 ~~~al~~~~a----~~P~D-----------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALA----ANPDD-----------LDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3556677777 78888 7889999999999999999999999999999876
No 314
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.38 E-value=1.5 Score=35.44 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=46.6
Q ss_pred HHHccCHHHHHHHHHHHHhhCC----C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 457 LLKLGECRKSIEACNKVLDANP----A-----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~~p----~-----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
..+.++|..|++.+.+.+.... . ..-++.++|..+...|++++|+..++.|+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4578999999998888876532 1 256889999999999999999999999999843
No 315
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.20 E-value=0.9 Score=36.81 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=48.2
Q ss_pred hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
..+.++|..|++.+.+..++......... ......+..|+|.++...|++++|+..+++|+.+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45789999999999998885432211110 11234578899999999999999999999999874
No 316
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.43 E-value=0.37 Score=45.22 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=53.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 406 ~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
..+++.++.+.|.+.|.+|+. +.|.. ..-|+.++....|.++++.|...+.++|++||.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~----lap~w-----------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE----LAPEW-----------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhh----cCchh-----------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 346678999999999999999 77765 6789999999999999999999999999999865
No 317
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.09 E-value=1.7 Score=33.52 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~ 431 (554)
.+.|..+..++..+=+.|+|.+|+.+|++|++.|..+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999999987653
No 318
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.01 E-value=2.2 Score=47.56 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=83.3
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 481 (554)
--+|-.+++.|++++|..+.+ ++. ...+.| -..+.-+-.||..++++++|...|++++..+|+ .
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le-~~~---~~~~~D-----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e 110 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLE-ALY---GLKGTD-----------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E 110 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHh-hhc---cCCCCc-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence 346677889999999984333 333 244444 245666788999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+-++.+=.||.+.+.|.+-.+.--+..+.-|++.--.|.....+-
T Consensus 111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 999999999999999988777777777778877545555544443
No 319
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.80 E-value=2.4 Score=45.57 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
...++-|-|.-++++++|..++++|...+..-| ..+|....++.||..+.+.+.|.+.++.|-+.+|.+
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 345677889999999999999999999997755 357888899999999999999999999999999987
No 320
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.78 E-value=3.8 Score=41.63 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=75.6
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 486 (554)
Q Consensus 407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~ 486 (554)
..+..|+|+.|+++.+....... +.+.. ....+..++...|...+ .-+...|..+..+++++.|+.+-+-..
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~v-ie~~~------aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKV-IEKDV------AERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHh-hchhh------HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHH
Confidence 34567788888877766554211 11111 12223344444444433 346899999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780 487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (554)
Q Consensus 487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~ 523 (554)
-+.+++..|+..++-..++.+.+.+|+ +++.....
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~lY~ 303 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPH--PDIALLYV 303 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCC--hHHHHHHH
Confidence 999999999999999999999999997 44544433
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.77 E-value=6.2 Score=39.99 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 008780 419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (554)
Q Consensus 419 ~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~ 497 (554)
..|++.++ .+|.|-+.+-.+..+.-.+...... --....-.+..+..+++||+.+|++.+.+..+-.+...+.+-
T Consensus 6 ~el~~~v~----~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 6 AELNRRVR----ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHH----hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 34667777 7888844433332222221110000 001112256777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 498 ~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
++..+-+++++..+|++ ..++...-...+.
T Consensus 82 ~~l~~~we~~l~~~~~~-~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGS-PELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHHHCCCC-hHHHHHHHHHHHH
Confidence 99999999999999987 5666655544443
No 322
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=1.7 Score=48.40 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=76.7
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-------cCHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSI 467 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-------~~~~~A~ 467 (554)
+.......+.|-.+...|+|.+|+++|+.+|-.+.-+--++.++....+++...+.-.+.-....+ ....+++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 556677789999999999999999999999874433333444444455555444432222222211 2233431
Q ss_pred --HHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 468 --EACNKVLDANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 468 --~~~~~al~~~p~-~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..|=.-..+.|- ..-|+.-.-.+++.+++|..|.....+.|++.|..
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 111122344453 34455556678899999999999999999999976
No 323
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.71 E-value=2 Score=42.66 Aligned_cols=99 Identities=8% Similarity=-0.010 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~-l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+|..+..+..+.+..+.|...+.+|++..+.....|...|..-+. .++.+.|...|+.+++.-|.+ ..++........
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 455555666677779999999999997777778889988888666 566666999999999999987 455544443333
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q 008780 528 QRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 528 ~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
......+.| ..|++.....+.
T Consensus 82 ~~~d~~~aR--~lfer~i~~l~~ 102 (280)
T PF05843_consen 82 KLNDINNAR--ALFERAISSLPK 102 (280)
T ss_dssp HTT-HHHHH--HHHHHHCCTSSC
T ss_pred HhCcHHHHH--HHHHHHHHhcCc
Confidence 333556666 788888776544
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.55 E-value=2.8 Score=37.45 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...+..+..+-++.++..++...+..+-.+.|+++..-.--|..++..|+|.+|+..|+.+..-.|.. +.++..+.-+-
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL 88 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHH
Confidence 55677788888899999999999999999999999999999999999999999999999988888876 66676666655
Q ss_pred HHH
Q 008780 527 KQR 529 (554)
Q Consensus 527 ~~~ 529 (554)
..+
T Consensus 89 ~~~ 91 (160)
T PF09613_consen 89 YAL 91 (160)
T ss_pred HHc
Confidence 444
No 325
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=89.86 E-value=3 Score=39.70 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=69.3
Q ss_pred hhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH-HHHH-HHHHHHHh-hC-CCChHH
Q 008780 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-RKSI-EACNKVLD-AN-PAHVKG 483 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~-~~A~-~~~~~al~-~~-p~~~ka 483 (554)
+|..|+|+.|+..-..||+.=. ..|+. -........+.-..+.|....+.|+. +-.. ..+..+.. .+ |+-+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l-~~Pd~--f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGL-TMPDQ--FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCC-CCCcc--ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 3567899999999999998311 12221 00112223344455566666666652 1111 11111111 11 444444
Q ss_pred --HHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 484 --LYRRGMAYM---------ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 484 --~~~~g~a~~---------~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|-..|.+++ ..++...|+..|++|+.+||+ .-++..+.++.++++
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k--~GVK~~i~~l~~~lr 225 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK--CGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHh
Confidence 444555552 456888999999999999987 468888888887775
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.68 E-value=8 Score=43.01 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=95.9
Q ss_pred CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC---CCCh--------hHHHHHhhhHHHHHHHHHHHH
Q 008780 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDD--------EEGKVFVGKRNLLHLNVAACL 457 (554)
Q Consensus 389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~---p~~~--------ee~~~~~~~~~~~~~nla~~~ 457 (554)
++.++.. +-.+.--|-.....+..+.|.+++.++++.++... +... +.......+...++..++.|.
T Consensus 294 l~~~~l~--~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 294 LPKEELY--ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred cCHHHHH--HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444443 34455567788888888899999999999887755 1111 112234455667888899999
Q ss_pred HHccCHHHHHHHHHHHHhhC---C------CChHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCChHHHHH
Q 008780 458 LKLGECRKSIEACNKVLDAN---P------AHVKGLYRRGMAYMALGEFEEAQRDFE--------MMMKVDKSSEPDATA 520 (554)
Q Consensus 458 ~kl~~~~~A~~~~~~al~~~---p------~~~ka~~~~g~a~~~l~~~~~A~~~~~--------~al~l~P~~~~~~~~ 520 (554)
+-+++|..|......+.... | ..+..+|-.|..+...|+.+.|...|. .+....+.++-.+-.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 99999999999888877653 2 247789999999999999999999998 666666665444444
Q ss_pred HHHH
Q 008780 521 ALSK 524 (554)
Q Consensus 521 ~l~~ 524 (554)
.|+.
T Consensus 452 ~LNl 455 (608)
T PF10345_consen 452 ALNL 455 (608)
T ss_pred HHHH
Confidence 4443
No 327
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.67 E-value=4.3 Score=41.27 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=70.3
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...+....-.|+|+.|.+.|+.-++ +|+. + ..-+-.|-....++|.++.|+.+..++-+..|.-
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEt-------R---llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l 187 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-----DPET-------R---LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL 187 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-----ChHH-------H---HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC
Confidence 34556666677888888888887666 3322 1 1111122223457899999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
+.++.-.-...+..|+|+.|++.++....
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999998876554
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.56 E-value=0.55 Score=32.07 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 485 YRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 485 ~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
+.+|.+|..+|+++.|+..++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6788999999999999999998885
No 329
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.51 E-value=2.7 Score=39.79 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=49.0
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
++..++....+.-+..|+..|.+|+..-+ .|... .....+.+-+|..+.++|++++|+.++.+++...-.+
T Consensus 128 yR~~~~~~~E~~fl~~Al~~y~~a~~~e~--~~~~~-------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 128 YRDLGDEENEKRFLRKALEFYEEAYENED--FPIEG-------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHhCc--CCCCC-------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 33444433333345566666666665211 11110 0115688899999999999999999999999875433
Q ss_pred h-HHHHHHHHH
Q 008780 481 V-KGLYRRGMA 490 (554)
Q Consensus 481 ~-ka~~~~g~a 490 (554)
. ..+..+|+-
T Consensus 199 ~~~~l~~~AR~ 209 (214)
T PF09986_consen 199 KEPKLKDMARD 209 (214)
T ss_pred CcHHHHHHHHH
Confidence 3 355555543
No 330
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=24 Score=37.90 Aligned_cols=140 Identities=17% Similarity=0.220 Sum_probs=82.8
Q ss_pred CchHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhh
Q 008780 328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNR 407 (554)
Q Consensus 328 ~v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 407 (554)
+.-..|..++..|.++....+.+..-| -.+..+..|...+..|..
T Consensus 256 qaq~~F~~av~~~d~n~v~~lL~ssPY-----------------------------------HvdsLLqva~~~r~qgD~ 300 (665)
T KOG2422|consen 256 QAQRDFYLAVIVHDPNNVLILLISSPY-----------------------------------HVDSLLQVADIFRFQGDR 300 (665)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccCCc-----------------------------------chhHHHHHHHHHHHhcch
Confidence 356778888888888888777764322 234456667777777777
Q ss_pred hhhcCCHHHHHHHHHHHHHHhhc-------cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q 008780 408 LFKEGKFELAKAKYEKVLRDFNH-------VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA- 479 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~l~~-------~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~- 479 (554)
-..++-..+|+-.+.+|+.-.=. +.-..+ +...+ ..+++.--..+.+.|.|.-|.++|+-.+.++|.
T Consensus 301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~-eNR~F----yL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e 375 (665)
T KOG2422|consen 301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYP-ENRQF----YLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE 375 (665)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccccccCcccch-hhHHH----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC
Confidence 77677777777777777652100 000111 11222 122222233344789999999999999999997
Q ss_pred ChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 008780 480 HVKGLYRRGMAYM-ALGEFEEAQRDFEMM 507 (554)
Q Consensus 480 ~~ka~~~~g~a~~-~l~~~~~A~~~~~~a 507 (554)
++-+...+--.|. ...+|.--+..++.+
T Consensus 376 DPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 376 DPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6665444433332 234555555444433
No 331
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.37 E-value=10 Score=39.00 Aligned_cols=106 Identities=10% Similarity=0.100 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDAT 519 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~---l~~~~~A~~~~~~al~l~P~~~~~~~ 519 (554)
..+..|+-.+|....+|+.-+...+..-.+ -++....-+..|.|+.. .|+.++|+..+..++.-..++.++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 456678888899999999988888776666 34566677888888888 89999999999997766555556766
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHhhcccccccc
Q 008780 520 AALSKLKKQRQVK-------LKVRLENSLKGCLTRSLGKF 552 (554)
Q Consensus 520 ~~l~~l~~~~~~~-------~~~~~~~~y~~~f~~~~~~~ 552 (554)
-.+..+.+.+-.+ .-.+....|++.|...++-|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 6666666555311 12222378999888776554
No 332
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.34 E-value=8.3 Score=39.17 Aligned_cols=118 Identities=20% Similarity=0.223 Sum_probs=84.9
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
+.+..+...+..+.+.|++..|.....++.. ..+... .....+.+..|..+...|+-.+|+...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~----~~~~~~-------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQ----LNPSSE-------SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc----cCCccc-------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677888889999999999999988877 321110 00145666667777788888888888877776
Q ss_pred h--C--------------------------------CCChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCh
Q 008780 476 A--N--------------------------------PAHVKGLYRRGMAYMAL------GEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 476 ~--~--------------------------------p~~~ka~~~~g~a~~~l------~~~~~A~~~~~~al~l~P~~~ 515 (554)
. . ...+++++.+|.-...+ +.+++++..|+.|.+++|++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1 0 11256788888888888 899999999999999999873
Q ss_pred HHHHHHHHHH
Q 008780 516 PDATAALSKL 525 (554)
Q Consensus 516 ~~~~~~l~~l 525 (554)
.++..+...
T Consensus 293 -k~~~~~a~~ 301 (352)
T PF02259_consen 293 -KAWHSWALF 301 (352)
T ss_pred -HHHHHHHHH
Confidence 344444433
No 333
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=7 Score=40.89 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=71.6
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH-h
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL-D 475 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al-~ 475 (554)
.+..+.-.|-....-+.|+.|...|..|.+..+. .++.+.+..|+|..|++.++-+. +.+++ .
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~ 429 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALDL 429 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHHh
Confidence 4556677788888888999999999999984322 23456788899999998766443 22222 2
Q ss_pred hCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 476 ANPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 476 ~~p~~----------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+.|.| ..++|-.|.-.+..+++.||...+.+.|+..
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 34432 3467888888888999999999999888875
No 334
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.76 E-value=1.4 Score=28.58 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008780 482 KGLYRRGMAYMALGEFEEAQRD--FEMMMKVDKSS 514 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~--~~~al~l~P~~ 514 (554)
+.++-+|..+...|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566667777777777777777 43666666543
No 335
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.54 E-value=11 Score=39.39 Aligned_cols=101 Identities=17% Similarity=0.067 Sum_probs=80.5
Q ss_pred HHHHHHHHhhhhhh-hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Q 008780 396 DEAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKV 473 (554)
Q Consensus 396 ~~a~~~~~~G~~~~-~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~a 473 (554)
-.|....+.|..+| -..+++.|..+.++|......+... ...+...+.-+|.||.... .+..|.....++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrka 115 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKA 115 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 35677778887776 4789999999999999865544332 2344677888999999888 799999999999
Q ss_pred HhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHH
Q 008780 474 LDANPAH----VKGLYRRGMAYMALGEFEEAQRDF 504 (554)
Q Consensus 474 l~~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~ 504 (554)
+++...+ .+.+|.+++.+.--.+|..|++.+
T Consensus 116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 9987654 567888999999999999998764
No 336
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.52 E-value=3.1 Score=32.32 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
..|..+..+|..+=+.|+|.+|+.+|.+||++|..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999998765
No 337
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=8.7 Score=41.22 Aligned_cols=104 Identities=22% Similarity=0.088 Sum_probs=76.1
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCChHH
Q 008780 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLDANPAHVKG 483 (554)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al~~~p~~~ka 483 (554)
.-.+...+....|......++. .+|.. +.++.|++.+....+. +.-+...+..+....|.|...
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~----~~~~~-----------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLS----VNPEN-----------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF 138 (620)
T ss_pred HhhccccccchhHHHHHhhhHh----cCccc-----------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence 3334444555555555666665 55555 7899999998888776 445555666699999999988
Q ss_pred HHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 484 LYRR------GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 484 ~~~~------g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
+..+ ++.+..+++..+|...+.++..+.|.+ ..+...+..
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~-~~~~~~~~~ 184 (620)
T COG3914 139 LGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY-PRVLGALMT 184 (620)
T ss_pred HhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh-hhhHhHHHH
Confidence 8887 888999999999999999999999988 444333333
No 338
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.17 E-value=8.7 Score=41.65 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=97.7
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh----------HHHHHhhhHHHHHHHHHHHHHHccCH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------EGKVFVGKRNLLHLNVAACLLKLGEC 463 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e----------e~~~~~~~~~~~~~nla~~~~kl~~~ 463 (554)
.-+.+..+.+-|..-.+..+++.|+.+.++|.. . |...+ .....+. ..+|.-.+..--..|-+
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~----v-P~~~~~~~yd~~~pvQ~rlhrS--lkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATH----V-PTNPELEYYDNSEPVQARLHRS--LKIWSMYADLEESLGTF 493 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc----C-CCchhhhhhcCCCcHHHHHHHh--HHHHHHHHHHHHHhccH
Confidence 344577788888888899999999999999886 2 22211 1111111 23455555555566778
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH-HHHHHHHHH--HHHHHHHHH
Q 008780 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK-SSEPDATAA-LSKLKKQRQ--VKLKVRLEN 539 (554)
Q Consensus 464 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P-~~~~~~~~~-l~~l~~~~~--~~~~~~~~~ 539 (554)
+.....|+++|.+.--.+....+.|.-+....-|++|-+.|++.+.|-+ .+..+++.. |.+..++.. .-+.+| .
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR--d 571 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR--D 571 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH--H
Confidence 8888888888888777788888888888888888888888888777743 233455544 223333332 444555 6
Q ss_pred HHHhhcccccccc
Q 008780 540 SLKGCLTRSLGKF 552 (554)
Q Consensus 540 ~y~~~f~~~~~~~ 552 (554)
.|...+...|..+
T Consensus 572 LFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 572 LFEQALDGCPPEH 584 (835)
T ss_pred HHHHHHhcCCHHH
Confidence 7777777666554
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.99 E-value=0.76 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFE 505 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~ 505 (554)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345666666666666666665543
No 340
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=87.73 E-value=2.9 Score=31.56 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
++.|..+..+|..+=+.|+|.+|+.+|.+|+++|..
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 456777888899999999999999999999998754
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.73 E-value=7.9 Score=39.85 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=71.7
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHH-HHH--hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh---------h--
Q 008780 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEG-KVF--VGKRNLLHLNVAACLLKLGECRKSIEACNKVLD---------A-- 476 (554)
Q Consensus 411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-~~~--~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~---------~-- 476 (554)
...|.++-..|..++... |.+.- ..+ ....+..+..++..+..+|++..|.+.+++||- .
T Consensus 7 s~~Y~~~q~~F~~~v~~~------Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~ 80 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSH------DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP 80 (360)
T ss_pred CHHHHHHHHHHHHHHHcc------CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677777777776621 11110 000 111367889999999999999999999999871 1
Q ss_pred ---C------------CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 477 ---N------------PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 477 ---~------------p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+ +.| -.|+||..+.+.+.|-+..|.+..+-.+.+||.+
T Consensus 81 ~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~ 136 (360)
T PF04910_consen 81 FRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE 136 (360)
T ss_pred hhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Confidence 1 222 4589999999999999999999999999999994
No 342
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=87.18 E-value=3.2 Score=32.07 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
++.|..+..+|...=..|+|++|+.+|..||++|..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 567778888999999999999999999999998765
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=8.9 Score=42.79 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l 428 (554)
.+..++..|+.+|++|+|++|...|-+++.++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 35668899999999999999999999998864
No 344
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=86.85 E-value=3.6 Score=31.80 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~ 431 (554)
+..|..+..+|...=..++|.+|..+|..+++++...
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999987653
No 345
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.72 E-value=7.8 Score=38.12 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=47.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~ 506 (554)
-+.-....+++.+|...+..++..+|++..+..-++.|+...|+.+.|...|..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344556789999999999999999999999999999999999999988876654
No 346
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.71 E-value=1.1 Score=46.33 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=48.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDA---------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~---------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
...|...|.-+|+|..|+...+.. ++ -+.+...+|..|.||+++++|.+|++.|...|-.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778899999999976553 22 2457788999999999999999999999988763
No 347
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.31 E-value=6.1 Score=30.56 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
..|..+-.+|..+=+.|+|.+|+.+|..|+++|..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45777888899999999999999999999998755
No 348
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=86.00 E-value=5.6 Score=30.63 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
++.|..+..+|...=..|+|.+|+.+|.+|++++..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999998755
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.83 E-value=6.8 Score=42.95 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=71.7
Q ss_pred HHhhhhhhhc----C-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc---CHHHHHHHHHHH
Q 008780 402 RVTGNRLFKE----G-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKV 473 (554)
Q Consensus 402 ~~~G~~~~~~----g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~a 473 (554)
...|..+++. . ++..|+..|.+|.+ +.. ..+.+++|.||..-. ++.+|..++..|
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~-------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A 354 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGN-------------PDAQYLLGVLYETGTKERDYRRAFEYYSLA 354 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHh----cCC-------------chHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence 3466666653 2 78889999999888 443 347788888888765 578899988887
Q ss_pred HhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008780 474 LDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P 512 (554)
... .+..|.+++|.+|.. ..+...|..+|++|.+.++
T Consensus 355 a~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 355 AKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred HHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 664 578999999999886 4688999999999998873
No 350
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=85.63 E-value=6.5 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
++.|..+...|...=..|+|++|+.+|..|++.|..
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456677778888888999999999999999998765
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.52 E-value=11 Score=39.28 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=57.9
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
.-..-...+..|+...|.+....+|+ ..|.+ .......+..+..+|.|+.|.....-+-..-..-
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr----~~~~~-----------p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~ 356 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALR----NQQQD-----------PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT 356 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHH----hCCCC-----------chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC
Confidence 33344445667778788877777777 55555 2233445556666677777766665554444444
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
.+++.-+-..+..++++++|.......|.-+-
T Consensus 357 ~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 357 DSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred chHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 55555555666666777776666555554433
No 352
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=85.22 E-value=7.3 Score=30.02 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=31.8
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
.++.|..+..+|..+=..|++++|+.+|.+|++.+..
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3556777888888888999999999999999998765
No 353
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.00 E-value=4.2 Score=39.47 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=44.1
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.+.|..+|+.|+|++|+..|+.++..... .. ...+...++..+..|+.++++.+..+..|-+++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-eg--------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRR-EG--------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHh-CC--------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 47788888888888888888887653221 11 123445677778888888888888887776655
No 354
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=12 Score=37.47 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=84.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHH--HHHHHHHHHHh
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR--KSIEACNKVLD 475 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~--~A~~~~~~al~ 475 (554)
|..-.+.|..+....+|..|..+|-+|.+-+..++.. .+. ...+-.+-.|...++..+ .++-..+.+++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~----v~A-----~~sLKYMlLcKIMln~~ddv~~lls~K~~l~ 279 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD----VKA-----LTSLKYMLLCKIMLNLPDDVAALLSAKLALK 279 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCc----HHH-----HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence 3444577888888899999999999998855544322 111 223333445555566554 46667778899
Q ss_pred hCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~--l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
++.....|+...+.|+.. +.+|+.|+++|+.=|.-|| -++..++.|...+-
T Consensus 280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~----ivr~Hl~~Lyd~lL 332 (411)
T KOG1463|consen 280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP----IVRSHLQSLYDNLL 332 (411)
T ss_pred ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh----HHHHHHHHHHHHHH
Confidence 888899999999999876 5799999999998888775 35666666655443
No 355
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.45 E-value=6.6 Score=40.36 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHH---ccCHHHHHHHHHHHH-hhCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 008780 447 NLLHLNVAACLLK---LGECRKSIEACNKVL-DANPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 447 ~~~~~nla~~~~k---l~~~~~A~~~~~~al-~~~p~~~ka~~~~g~a~~~l---------~~~~~A~~~~~~al~l~P~ 513 (554)
..+.+..|.++.+ .|+.++|+..+..++ ..++.++..+..+|.+|-.+ ...+.|+..|.++.+++|+
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3456677888888 899999999999954 55678899999999998753 3578999999999999975
Q ss_pred C
Q 008780 514 S 514 (554)
Q Consensus 514 ~ 514 (554)
.
T Consensus 259 ~ 259 (374)
T PF13281_consen 259 Y 259 (374)
T ss_pred c
Confidence 4
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.44 E-value=5.7 Score=40.23 Aligned_cols=82 Identities=16% Similarity=0.074 Sum_probs=57.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008780 468 EACNKVLDANPAHVKGLYRRGMAYMALGE------------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKV 535 (554)
Q Consensus 468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~------------~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (554)
..+++.+..+|+++.+|..+..-.-.+-. .+..+..|++||+.+|++ ..+.. ..++...+.-...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~-~~L~l--~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS-ERLLL--GYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC-HHHHH--HHHHHHHHhCCHH
Confidence 45778899999999999998877766644 466778999999999987 33333 3333333322333
Q ss_pred HHHHHHHhhcccccccc
Q 008780 536 RLENSLKGCLTRSLGKF 552 (554)
Q Consensus 536 ~~~~~y~~~f~~~~~~~ 552 (554)
++.+.+++++..+|+++
T Consensus 83 ~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHHCCCCh
Confidence 34577999988887764
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.33 E-value=14 Score=38.26 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHH--HccCHHHHHHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL--KLGECRKSIEACNKVL 474 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~--kl~~~~~A~~~~~~al 474 (554)
.+.....++..+|++++|..|...+...+. .-+.+.+ ...+.+++.+|. -.-+|.+|.+.++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~----rl~~~~~---------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLR----RLPGREE---------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCchhh---------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456777889999999999999999999887 2232211 234555555544 3556777777777555
Q ss_pred hhC------------------------------CC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 475 DAN------------------------------PA--------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 475 ~~~------------------------------p~--------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
... .. ....++.-|.-....|+|+.|+.-+-+++++
T Consensus 197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 321 00 0112333444445678999999999888886
No 358
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.92 E-value=2.1 Score=28.25 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN 432 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~ 432 (554)
..+-..|...+..++|.+|+.-|++||++...+-
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3456788889999999999999999999655443
No 359
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.77 E-value=14 Score=28.89 Aligned_cols=66 Identities=18% Similarity=0.073 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc--CCC----ChhHHHHHhhhHHHHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV--NPQ----DDEEGKVFVGKRNLLHLNVAACLLK 459 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~--~p~----~~ee~~~~~~~~~~~~~nla~~~~k 459 (554)
..+.|....++|-.+-..|+.++|+.+|+++++.|..- .|. ..++++....+....-.++..+-.+
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~R 75 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTR 75 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888988888899999999999999987642 121 2245555555555555555555443
No 360
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.70 E-value=35 Score=31.15 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
..++..+|..|.+.|+++.|++.|.++...... -...+++.-++....++|..+...+.+|-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998887532 35678888999999999999999999998873
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.50 E-value=2.3 Score=25.19 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACN 471 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~ 471 (554)
.+++++|..+..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367899999999999999998875
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.17 E-value=14 Score=32.54 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=28.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
+..+.+...+..++.......--+.|+++....--|..|+..|+|.+|+..|+...+-.+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 333333344444444444444444455555555555555555555555555544444433
No 363
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.12 E-value=5.4 Score=39.14 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (554)
Q Consensus 417 A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 493 (554)
|..+|.+|+. +.|.. ...|+.+|..+...++.-.|+-+|-+++......+.|.-++...+..
T Consensus 1 A~~~Y~~A~~----l~P~~-----------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR----LLPSN-----------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH----H-TTB-----------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----hCCCC-----------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999 88877 78999999999999999999999999998766668888888877777
No 364
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.79 E-value=5.4 Score=25.90 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHccCHHHHHHH--HHHHHhhCCCC
Q 008780 449 LHLNVAACLLKLGECRKSIEA--CNKVLDANPAH 480 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~--~~~al~~~p~~ 480 (554)
.+..+|.++..+|+|++|+.. +.-+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456789999999999999999 55888887764
No 365
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=23 Score=36.40 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+.+.+-+-.||+..+.|++|-....++.-- +...+..+|.+|.+..-..+|..|.++|-+|+...|++
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 345566677888899999999888876521 22346678899999999999999999999999999975
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.18 E-value=68 Score=36.45 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=82.2
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (554)
+-......-....+-.+..+.+|.+|-..-.++...+... .. . ....+.....--.|.+....++++.|++.++
T Consensus 409 ~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~--~~-~---~~~~l~ae~~aL~a~val~~~~~e~a~~lar 482 (894)
T COG2909 409 ELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAP--MH-S---RQGDLLAEFQALRAQVALNRGDPEEAEDLAR 482 (894)
T ss_pred HHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcC--cc-c---chhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3333444445567777778889999988888877643321 11 0 0112223444455667777899999999999
Q ss_pred HHHhhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 472 KVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 472 ~al~~~p~~-----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
.++..=|.+ .-++...|.+++-.|++++|+...+.+.++.-
T Consensus 483 ~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 483 LALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred HHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 999887754 55788899999999999999999999988843
No 367
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=78.46 E-value=1e+02 Score=33.91 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=70.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP- 478 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p- 478 (554)
.+...|..+...|+.+.|...|.+|+. ..-.. -+.+..+|++.|..-++..+++.|+....+|..+-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~----V~y~~-------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATK----VPYKT-------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhc----CCccc-------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 345667777778888888888888877 32221 122366788888888888888888888888775521
Q ss_pred -----------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 479 -----------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 479 -----------------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+.+.|...+-....+|-++...+.|.+.+.|--..
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT 510 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT 510 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 134555556666666777777778888888775444
No 368
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.41 E-value=26 Score=40.28 Aligned_cols=106 Identities=25% Similarity=0.320 Sum_probs=67.1
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-- 478 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-- 478 (554)
....|+.+|..+.|+.|.-+|.-.- -+..+|..+..+|+|..|.+.+++|-...-
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vS-----------------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVS-----------------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 3467778888888887777775433 356678888889999999998888632210
Q ss_pred -----------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 479 -----------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 479 -----------------------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
-++.-+--+-.-|...|-|++-+..++.+|-++..+ -..--+|..|..+-+
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH-MgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH-MGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH-HHHHHHHHHHHHhcC
Confidence 011222233344556777888888888888777655 233444555555444
No 369
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=78.40 E-value=31 Score=34.04 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=70.0
Q ss_pred HHHHhhhhhhh----cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-----c--CHHHHHH
Q 008780 400 KIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----G--ECRKSIE 468 (554)
Q Consensus 400 ~~~~~G~~~~~----~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-----~--~~~~A~~ 468 (554)
.....|..++. ..++.+|...|++|.+ ....+. ..+.++++.+|..- - +...|+.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~----~g~~~a----------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~ 176 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAK----LGNVEA----------ALAMYRLGLAYLSGLQALAVAYDDKKALY 176 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHH----cCChhH----------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence 44556666665 4589999999999998 432210 23466777777654 1 2347888
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008780 469 ACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 469 ~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P 512 (554)
.+.++-... +..+.+++|.+|.. ..++.+|..+|.+|-+...
T Consensus 177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888887765 88999999988865 4589999999999998765
No 370
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.24 E-value=21 Score=33.61 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=54.8
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
.+++.++..+|+.....-++.+|.+.-....+-+.+.-.|+|+.|..-++-+-.++|+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456778899999999999999999999988899999999999999999999999999873
No 371
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.15 E-value=3.9 Score=47.76 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=86.8
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+....+.|.....++.|.+|.+ ..+++.++++... .++.....+|..+|..+.+++++++|+..+.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~-------~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMG-------VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhh-------hcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 567788899999999999999998 7777776553211 11222378999999999999999999999998875
Q ss_pred hC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 476 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 476 ~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+. |+...++-+++...+...+...|+..+.+|+.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 53 566788999999999999999999999999986
No 372
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.70 E-value=4.5 Score=31.21 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=30.8
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
++.+..+..+|...=..|+|++|+..|..|++++..
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 346777778888888999999999999999998765
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.18 E-value=15 Score=35.88 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=62.9
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...=..+...+++..|...-.+.+. ++|.+. .-.-.+|.+|.+++.+.-|+..+...++.-|+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~----l~P~dp-----------~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLD----LNPEDP-----------YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHh----hCCCCh-----------hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 33445567788999999999999999 888883 345678999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 008780 481 VKGLYRRGMAY 491 (554)
Q Consensus 481 ~ka~~~~g~a~ 491 (554)
+.+..-+.+..
T Consensus 249 ~~a~~ir~~l~ 259 (269)
T COG2912 249 PIAEMIRAQLL 259 (269)
T ss_pred hHHHHHHHHHH
Confidence 88877766654
No 374
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.10 E-value=52 Score=35.51 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=80.4
Q ss_pred HHhhhhhhh---cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--
Q 008780 402 RVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-- 476 (554)
Q Consensus 402 ~~~G~~~~~---~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-- 476 (554)
.+.|+.+|+ ...|.+|...|.-|....+ |++--..-+-....+..++.+|..+..+|+.+.|.....++|=.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d---~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHD---PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcC---CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 567777774 5678899999888877422 11100000001122567788999999999988877777776611
Q ss_pred -------------------CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHH
Q 008780 477 -------------------NPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-SEPDATAAL 522 (554)
Q Consensus 477 -------------------~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~-~~~~~~~~l 522 (554)
.|.| -.++||.-+.+...|-+.-|.++.+..++++|. |.-.+.-.+
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~I 384 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLI 384 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHH
Confidence 1333 458888899999999999999999999999998 533333333
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.99 E-value=84 Score=34.96 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=79.2
Q ss_pred HHHHHHHHhhhhhh-hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 396 DEAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 396 ~~a~~~~~~G~~~~-~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.++....+.|..++ ...+++.|..+..+++....+ +. +.+++..+.+-++.++.+.+... |...+++++
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~-------~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER--HR-------LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cc-------hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 45777888998888 678999999999999985444 21 34455667777799998888877 999999999
Q ss_pred hhCCC----ChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC
Q 008780 475 DANPA----HVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 475 ~~~p~----~~ka~~~~g~a~~~--l~~~~~A~~~~~~al~l~ 511 (554)
+.-.. .....|++-++... .+++..|+..++....+.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 87544 34445555433222 369999999999988876
No 376
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.49 E-value=44 Score=34.54 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH--ccCHHHHHHHHH
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--LGECRKSIEACN 471 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k--l~~~~~A~~~~~ 471 (554)
.....++..+|++.+|..|...|..++. ..+.. +. .-...++.+++.||.. .=+|++|.++++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~----r~l~~-~~-----~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLR----RLLSA-VN-----HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHh----cccCh-hh-----hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4555678899999999999999999887 32221 11 1124566666666654 456778877777
No 377
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=74.89 E-value=26 Score=39.27 Aligned_cols=109 Identities=18% Similarity=0.117 Sum_probs=69.6
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHH----Hhhcc--CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLR----DFNHV--NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~----~l~~~--~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
+.+.+..+-.+++...|+++|+++-. ..+-+ .|..-+.. ....--..+|.-.|...-..|+.+.|+.+|..|-
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y-v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY-VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH-HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 45666666666677777777766421 11101 11110100 0011113567777777778888888888887765
Q ss_pred h---------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 475 D---------------------ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 475 ~---------------------~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
. ....+..|-|.+|+-|...|++-+|+..|.+|-.+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2 23567889999999999999999999988877554
No 378
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.70 E-value=73 Score=32.80 Aligned_cols=115 Identities=16% Similarity=0.056 Sum_probs=85.3
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
-.--..+......+-++|-|..|++.-+-.+. ++|.+|- .-+++-+=...++.++|+=-++.++...
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLls----Ldp~~DP---------~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLS----LDPDEDP---------LGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCCCCc---------chhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 33455666777888899999999998888888 8888421 3455556666678889988888888876
Q ss_pred hhCCC-----ChHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 475 DANPA-----HVKGLYRRGMAYMALGEF---------------EEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 475 ~~~p~-----~~ka~~~~g~a~~~l~~~---------------~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
..... -+..-|-++.|++.+++- +.|...+++|+...|. .+...+.++
T Consensus 167 ~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~---vl~~Ll~~l 234 (360)
T PF04910_consen 167 AKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW---VLVPLLDKL 234 (360)
T ss_pred hhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH---HHHHHHHHh
Confidence 63221 235678889999999998 8999999999999885 344455544
No 379
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.47 E-value=10 Score=33.30 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~ 496 (554)
......|...+..|+|.-|+..++.++..+|+|..+...++.++..++.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3456667777777888888888888888888888887777777776653
No 380
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.02 E-value=62 Score=31.85 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
..|+..|.+|.. .. ...+.++++.||.. ..++.+|..++.++-+... ..++++++ .
T Consensus 172 ~~A~~~~~~aa~----~~-------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAE----LG-------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHH----hc-------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 467777777776 22 15688899999876 3589999999999999876 89999999 6
Q ss_pred HHHcC---------------CHHHHHHHHHHHHHhCCCC
Q 008780 491 YMALG---------------EFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 491 ~~~l~---------------~~~~A~~~~~~al~l~P~~ 514 (554)
+...| +...|...+.++....+..
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 66555 8888888888888876653
No 381
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.07 E-value=71 Score=28.28 Aligned_cols=107 Identities=18% Similarity=0.118 Sum_probs=70.1
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+.+.........+.+++...... ++ .+.|.. ..+..--+..++..++|.+|+..++.+.+-.+..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdA-Lr---vLrP~~-----------~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDA-LR---VLRPNL-----------KELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-HH---HhCCCc-----------cccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 33333444446666665554332 33 366766 3455566888899999999999999999988887
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
+-+--.++.|+..+++.+-=. +-..+++-+++ .++....+.+
T Consensus 78 p~~kAL~A~CL~al~Dp~Wr~-~A~~~le~~~~--~~a~~Lv~al 119 (153)
T TIGR02561 78 PYGKALLALCLNAKGDAEWHV-HADEVLARDAD--ADAVALVRAL 119 (153)
T ss_pred hHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCC--HhHHHHHHHH
Confidence 877777899999999886543 33445555443 3444444444
No 382
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=72.05 E-value=17 Score=38.60 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=48.2
Q ss_pred cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCC
Q 008780 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL---GEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 461 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l---~~~~~A~~~~~~al~l~P~~ 514 (554)
..+..|+.++.+++..-|.....|.+++.+++.. ++.-.|+.+...|+++||..
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~ 444 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI 444 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH
Confidence 4678899999999999999999999999999985 56778889999999999976
No 383
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.03 E-value=16 Score=35.24 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHh
Q 008780 414 FELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (554)
-+.|...|++|+..... +.|.+ .++..+.+|.+..|+. +++..+|+..+++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~--------p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTH--------PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTS--------HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCC--------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47899999999998776 67766 3456778888887754 8999999999988753
No 384
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.71 E-value=24 Score=36.52 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC---HHHHH---
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE---CRKSI--- 467 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~---~~~A~--- 467 (554)
.+=.+.-+.++|..++.+..|..|+.+.-.|=+++..+++.--| .-.-.+.+...+.+||+++++ ..+|.
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe----~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLE----LVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHH----hhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 34456778899999999999999999998888876554432100 111123455667889998875 22332
Q ss_pred HHHHHHHhhC-------------CC-ChHH-----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 468 EACNKVLDAN-------------PA-HVKG-----LYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 468 ~~~~~al~~~-------------p~-~~ka-----~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
..|++.+... +. -.+| +...|...++.|+-++|..+|+.|..
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2333333221 11 2233 33458899999999999999988865
No 385
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=71.38 E-value=12 Score=36.00 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=62.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------
Q 008780 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA------ 479 (554)
Q Consensus 406 ~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~------ 479 (554)
..++..++.-.|+..|...+. -.|.+---...-....-.+++....|+. --....|.++++.||-....
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~----~~~~NL~~l~~~a~~lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~~ 77 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILK----GSPTNLTALIFKAACLEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRSK 77 (368)
T ss_pred cchhcccchHHHhhhhhhhhc----cCCcceeEEeehhhhHHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCcce
Confidence 345556666677777777665 3333200000000001123344444442 23456788888888865321
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
---+-+|++.+++.+.+|+.|..+|.+|+.+--++
T Consensus 78 IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 78 IGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred eeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 13367899999999999999999999999985443
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.77 E-value=7.4 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=24.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+++|.+|..+|+++.|....++++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 368999999999999999999999953
No 387
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.00 E-value=36 Score=31.71 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQ 501 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~l~~~~~A~ 501 (554)
+.+.+.+|..|. ..+..+|+..+.++|++... |+..+.-++.+++.+++++.|-
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345555665554 55677777777777776432 5777777777777777777764
No 388
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.89 E-value=18 Score=35.38 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 466 A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
|..+|.+|+.+.|.+-..|..+|..+...++.=.|+-+|-+++-..-.. +.++.-|..+-
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999764333 34444444433
No 389
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=69.62 E-value=35 Score=38.36 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=66.8
Q ss_pred hhhcCCHHHHHHHHHHHHHH--hhcc----CCCChh----HHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH----
Q 008780 408 LFKEGKFELAKAKYEKVLRD--FNHV----NPQDDE----EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV---- 473 (554)
Q Consensus 408 ~~~~g~~~~A~~~Y~~al~~--l~~~----~p~~~e----e~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a---- 473 (554)
....|-.++|...|+++-++ ++.+ .-.++. |.+.... ....|+|.|.-+...++.+.|+++|+++
T Consensus 810 AieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 44667788888888887553 2221 111110 0011111 2346788888888888999999998874
Q ss_pred ------HhhCC----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 474 ------LDANP----------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 474 ------l~~~p----------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
|.-+| .+.+.|-..|+-+...|+.+.|+..|..|-..
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 23344 34556667899999999999999999888654
No 390
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.00 E-value=53 Score=36.04 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=68.2
Q ss_pred HHHhhhhhhh---cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc----cCHHHHHHHHHHH
Q 008780 401 IRVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----GECRKSIEACNKV 473 (554)
Q Consensus 401 ~~~~G~~~~~---~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl----~~~~~A~~~~~~a 473 (554)
....|..++. ..++..|..+|..|.. .. + ..+.+++|.||..- .+...|..+++++
T Consensus 328 ~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~----~G--~-----------~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 328 QYLLGVLYETGTKERDYRRAFEYYSLAAK----AG--H-----------ILAIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHHHHH----cC--C-----------hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 3444444443 3578899999999988 21 2 56889999999763 5799999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q 008780 474 LDANPAHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~l-~~~~~A~~~~~~al~l~ 511 (554)
-+.+ ++.|.+.++..+... ++++.+...+....++.
T Consensus 391 A~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 391 AEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 9987 688888887777665 77777776665555543
No 391
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.35 E-value=1.2e+02 Score=29.55 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=74.5
Q ss_pred hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008780 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIEACNKVLDANPAHVKGLYRRG 488 (554)
Q Consensus 410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~al~~~p~~~ka~~~~g 488 (554)
+..+-.+|+..-..+|+ ++|.+ -.++.-+=.|+..+ .+..+-+++.+++++-+|.|-..|..|-
T Consensus 55 ~~E~S~RAl~LT~d~i~----lNpAn-----------YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr 119 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIR----LNPAN-----------YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR 119 (318)
T ss_pred ccccCHHHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 44556789999999998 88877 45555554554443 4577888889999999999999999999
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 489 MAYMALGEFE-EAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 489 ~a~~~l~~~~-~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
.+...++++. .-+...+.++..|..| -.++...+-+
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKN-YHaWshRqW~ 156 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKN-YHAWSHRQWV 156 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccc-hhhhHHHHHH
Confidence 9999999887 7788888888888766 3444444433
No 392
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=67.34 E-value=22 Score=37.01 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=72.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCC-------------CChhHHH--HHh----hhHHHHHHHHHHHHHHc
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-------------QDDEEGK--VFV----GKRNLLHLNVAACLLKL 460 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p-------------~~~ee~~--~~~----~~~~~~~~nla~~~~kl 460 (554)
...+-|...+..++|..|+....+||+....+.. ...|+.+ ... ......+...+
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a------ 106 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERA------ 106 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHH------
Confidence 4557788888899999999999999886432211 1111100 000 01112233333
Q ss_pred cCHHHHHHHHHHHHhhCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 461 GECRKSIEACNKVLDANPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 461 ~~~~~A~~~~~~al~~~p~~----------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
.++..|...+.-.|.. ...|.++=.||+..|++..|++.-...+--+|++ ..++..+.-.+
T Consensus 107 ----~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdd-e~ik~~ldyYq 177 (471)
T KOG4459|consen 107 ----ACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDD-EDIKQNLDYYQ 177 (471)
T ss_pred ----HHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcH-HHHHHHHHHHH
Confidence 3444455554443332 3678888999999999999999999999999987 55665555443
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.90 E-value=46 Score=32.17 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CChHHHHHHH
Q 008780 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRG 488 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p------~~~ka~~~~g 488 (554)
...+..+.+|+..+..... ..+...+...+|.-|++.|+|++|+.+++.+..... -....+.++.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~ 225 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL 225 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4556667777664433221 123356778999999999999999999999965422 1355777888
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 008780 489 MAYMALGEFEEAQRDFEMM 507 (554)
Q Consensus 489 ~a~~~l~~~~~A~~~~~~a 507 (554)
.|...+|+.+..+...-+.
T Consensus 226 ~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 226 ECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 9999999988877654443
No 394
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=66.52 E-value=1.1e+02 Score=33.14 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=57.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM-MMKVDKSSEPDATAAL 522 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~-al~l~P~~~~~~~~~l 522 (554)
++..+..++....+.-....++..+|+++.++.+++.+....+....|...+.. |....|+| ......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDN-AEFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcch-HHHHhhH
Confidence 677778889998999999999999999999999999999999887777776666 99999987 4444333
No 395
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=66.24 E-value=30 Score=34.10 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=54.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
...+.+.+..+...++++.++...++-+. ++|-+ -.+|..+-..|++.|+...|+..|++.-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~-----------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE----LDPYD-----------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45677888899999999999999999888 88887 46788888899999999999999988654
No 396
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.11 E-value=1.2e+02 Score=28.74 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=48.4
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 482 (554)
....+.+.++..+|+..-+.-++ ..|.+ ..+..-+-..+.-.|+|.+|...|+-+-.+.|++.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVk----akPtd-----------a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVK----AKPTD-----------AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHh----cCCcc-----------ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34467788899999999998888 78877 223223333345689999999999999999998654
No 397
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=65.85 E-value=19 Score=42.43 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=82.1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..++..+..+.+.+++++|+..-.+|.-........+.. -....|.|++...+..++...|+..+.+++.+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~-------~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP-------NTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH-------HHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 35666778888888999999998888876543333222211 12567899999999999999999999998866
Q ss_pred C--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 477 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 477 ~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
. |.-+-..-++++.+..+++++.|++.++.|+.++
T Consensus 1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3 4445556778888999999999999999999863
No 398
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=64.90 E-value=42 Score=35.16 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=48.1
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
.....+.|..+|.+|+|.++..+-.=..+ +.| + ..+|--+|.|.+..++|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~----iaP-S-----------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK----IAP-S-----------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH----hCC-c-----------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 45567888899999999988765544445 777 3 578889999999999999999987664
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.89 E-value=58 Score=25.37 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHH---HHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLY---RRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~---~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
..+.=++..++..+|+....++|+..++....+- .+.+||...|+|+++++..-+=+.
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455778899999999999999887665443 456788889999998876544333
No 400
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=64.71 E-value=32 Score=34.09 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhh
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~ 429 (554)
...++.|..+..++...=+.++|.+|..+|+.|++|+-
T Consensus 4 ~~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 4 GSFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred chHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 34577788888888888899999999999999999864
No 401
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.93 E-value=40 Score=29.57 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
.-......+++..+..|+|..|...+..++..+|+| .+++......-+.+.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-EEARQLKADALEQLG 118 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999998 577777776665554
No 402
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=63.50 E-value=24 Score=38.74 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=18.1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDF 504 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~ 504 (554)
|++.+.+=.+|..+...|--++|...|
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 666666666777777666666666554
No 403
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=63.49 E-value=89 Score=27.17 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=38.9
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 450 HLNVAACLL-KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 450 ~~nla~~~~-kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
|.++|.-++ +.++-++--+.+...+.-+..++..++.+|.||..+|+..+|-..+++|.+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 455565444 3344444444444555445568999999999999999999999999999874
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.43 E-value=34 Score=31.57 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
....++...+.+...| ++..+.+++.++..+|+.++|....+++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 5566677788888888 79999999999999999999999999999999954
No 405
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.07 E-value=1.9e+02 Score=29.98 Aligned_cols=68 Identities=13% Similarity=0.036 Sum_probs=53.1
Q ss_pred HHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 458 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~--~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
.+...+++-+.+...+|..+|+.--+|+.|..++.... ++..-++..+++|++||.|. .++.-.+-+.
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf-h~W~YRRfV~ 155 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF-HAWHYRRFVV 155 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc-cchHHHHHHH
Confidence 34456788888899999999999999999999999765 46888889999999999873 3444333333
No 406
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.48 E-value=38 Score=26.13 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhCCCC
Q 008780 499 EAQRDFEMMMKVDKSS 514 (554)
Q Consensus 499 ~A~~~~~~al~l~P~~ 514 (554)
+|++.|.+++.+.|++
T Consensus 31 ~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 31 KAIEVLSQIVKNYPDS 46 (75)
T ss_pred HHHHHHHHHHHhCCCh
Confidence 3445566666677765
No 407
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.44 E-value=86 Score=33.62 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=52.9
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...+..+...|+-+.|+..++.+++ ...++....+++.+|.|+.-+.+|.+|..++....... ++
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dW 335 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DW 335 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hh
Confidence 34556666666776666666666554 12345567899999999999999999999999988775 46
Q ss_pred hHHHHHH
Q 008780 481 VKGLYRR 487 (554)
Q Consensus 481 ~ka~~~~ 487 (554)
.+|+|..
T Consensus 336 S~a~Y~Y 342 (546)
T KOG3783|consen 336 SHAFYTY 342 (546)
T ss_pred hHHHHHH
Confidence 6666553
No 408
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.41 E-value=1.5e+02 Score=34.62 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=73.2
Q ss_pred HhhhhhhhcCCHHHHHHHHHH------HHHHhh-ccCCCChhHHHH-HhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 403 VTGNRLFKEGKFELAKAKYEK------VLRDFN-HVNPQDDEEGKV-FVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~------al~~l~-~~~p~~~ee~~~-~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
+.|+.....+-|++|...|++ |+..+- .+..-+ ...+- .+.-...+|..+|.+++..+...+|++.|-+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ld-RA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLD-RAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHH-HHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 567777777888888888764 444332 111111 00000 01112568999999999999999999999764
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+++..|...-.+....|.|++-++++..|.+-
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 67888889999999999999999999988875
No 409
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.90 E-value=22 Score=34.96 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
+.+.+...+.+|...|.+.+|+...++++.+||=+ +..+..|..+-...
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~ 326 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATL 326 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHh
Confidence 35667778999999999999999999999999987 45555555544444
No 410
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=60.80 E-value=83 Score=31.74 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=51.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~--~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
-.|+|.+..+..=...++...+.+.+. =..+.-.+--+|-.+..+|+-++|...|.+|+.+.++.
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 468888887777777777766665544 23456667778999999999999999999999999874
No 411
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.79 E-value=1.4e+02 Score=27.41 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=68.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH-hhCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL-DANP 478 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al-~~~p 478 (554)
.....|..+..+|+-..|+..|..+-. -.+.. .-.+-.+.+.-|..+.-.+.|++.....+..- .-+|
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~----dt~~P-------~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~ 164 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAA----DTSIP-------QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhc----cCCCc-------chhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCCh
Confidence 445667778888899999999988766 22211 11123455666777778888988766554421 2234
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
--..+.--+|.+-.+.|+|..|...|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4455666788999999999999999998887
No 412
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=60.48 E-value=1.2e+02 Score=31.66 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 486 RRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 486 ~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+..||+.+++.+.|+....+.+.++|.+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 47889999999999999999999999986
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.42 E-value=52 Score=30.15 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=21.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 483 (554)
--....++++.|.|++|.+.+++... +|++.+-
T Consensus 114 k~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 114 KEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 33445566677777777777777776 6666655
No 414
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=58.92 E-value=29 Score=32.30 Aligned_cols=63 Identities=13% Similarity=-0.035 Sum_probs=46.1
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (554)
++.++.....|..|. +.+-.+|+..|.++|+....-+. ....++.-||..|+++++++.|--+
T Consensus 138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-----------~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-----------FNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHHHhcchhhhhhh
Confidence 344555666666555 67899999999999994332212 2267899999999999999998643
No 415
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=58.78 E-value=26 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 008780 466 SIEACNKVLDANPAHVKGLYRRGMAYMAL 494 (554)
Q Consensus 466 A~~~~~~al~~~p~~~ka~~~~g~a~~~l 494 (554)
.+.++.+++..+|.|-.+|..|-.++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 56788899999999999988887666543
No 416
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.70 E-value=1.1e+02 Score=40.49 Aligned_cols=101 Identities=14% Similarity=0.011 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----C----CHHHHHHHHHHHHHhCCCCh
Q 008780 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL----G----EFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l----~----~~~~A~~~~~~al~l~P~~~ 515 (554)
...+..+.-.|..+.+++++++|-..+..|++++-.-.|+|+.-|.-+... . --..|+.+|-+|.....++
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~s- 2887 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSS- 2887 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccch-
Confidence 334567778899999999999999999999999999999999988876652 1 2356778888888876543
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780 516 PDATAALSKLKKQRQ-VKLKVRLENSLKGCLT 546 (554)
Q Consensus 516 ~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~ 546 (554)
.++..+.++.-.+. .+...-+.+++.+...
T Consensus 2888 -kaRk~iakvLwLls~dda~~~l~~~~~k~l~ 2918 (3550)
T KOG0889|consen 2888 -KARKLIAKVLWLLSFDDSLGTLGDVFDKFLG 2918 (3550)
T ss_pred -hhHHHHHHHHHHHHhccccchHHHHHHHhhc
Confidence 46777777766665 3333333344554443
No 417
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.67 E-value=51 Score=25.54 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhCCCC
Q 008780 498 EEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 498 ~~A~~~~~~al~l~P~~ 514 (554)
.+|+..|..+++..|+.
T Consensus 30 ~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 30 QEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHHhhCCCH
Confidence 34455566666677753
No 418
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=55.22 E-value=1.2e+02 Score=25.26 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=48.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCC
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~l~~-----------~~~A~~~~~~al~l~P~~ 514 (554)
+|.-++..|++-+|++..+..+...+++. -.+...|..+..+.. .-.|+++|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 46678899999999999999999988766 345556877765432 346888999999999974
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.80 E-value=30 Score=20.63 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780 495 GEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (554)
Q Consensus 495 ~~~~~A~~~~~~al~l~P~~~~~~~~~l~ 523 (554)
++++.|...|++++...|.+ ..++....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~-~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKS-VELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC-hHHHHHHH
Confidence 34566677777777766654 44544433
No 420
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.35 E-value=1e+02 Score=30.09 Aligned_cols=78 Identities=10% Similarity=0.030 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG------EFEEAQRDFEMMMKVDKSSEPDATAAL 522 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~------~~~~A~~~~~~al~l~P~~~~~~~~~l 522 (554)
++..+-.|....+.|+.-+.+|.+.|+.|-.|-.||-.|-....... ..+.-+....+.+.+.|+| ..+++-|
T Consensus 149 aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N-eSaWnYL 227 (318)
T KOG0530|consen 149 AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN-ESAWNYL 227 (318)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC-ccHHHHH
Confidence 44445555555555555555555555555555555544433333311 1222334445555555655 3455555
Q ss_pred HHHHH
Q 008780 523 SKLKK 527 (554)
Q Consensus 523 ~~l~~ 527 (554)
.-+.+
T Consensus 228 ~G~l~ 232 (318)
T KOG0530|consen 228 KGLLE 232 (318)
T ss_pred HHHHH
Confidence 44433
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=52.81 E-value=2.5e+02 Score=30.16 Aligned_cols=118 Identities=17% Similarity=0.076 Sum_probs=73.1
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc----------------cCCCChhHH-HHHhhhHHHHHHHHH----
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH----------------VNPQDDEEG-KVFVGKRNLLHLNVA---- 454 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~----------------~~p~~~ee~-~~~~~~~~~~~~nla---- 454 (554)
+.+..-++.+..|-+ .+-..|...|.+|+.-+-. +-+++-+.. ....++...+-.+++
T Consensus 130 nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~ 208 (711)
T COG1747 130 NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLM 208 (711)
T ss_pred hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHH
Confidence 344455566655555 7788888999888753211 112221111 111112122222222
Q ss_pred ----HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHh
Q 008780 455 ----ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA--------------------LGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 455 ----~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~--------------------l~~~~~A~~~~~~al~l 510 (554)
.-|....+|.+|++.....|+.|..+.+|.-.+-.-+.. -.+|-+|+.+|++.+.+
T Consensus 209 qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f 288 (711)
T COG1747 209 QDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHF 288 (711)
T ss_pred HHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhee
Confidence 333345789999999999999999998887666555555 56888999999999888
Q ss_pred CCCC
Q 008780 511 DKSS 514 (554)
Q Consensus 511 ~P~~ 514 (554)
+..|
T Consensus 289 ~eGn 292 (711)
T COG1747 289 DEGN 292 (711)
T ss_pred ccCc
Confidence 7655
No 422
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.70 E-value=39 Score=32.90 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=44.8
Q ss_pred HccCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 459 KLGECRKSIEACNKVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 459 kl~~~~~A~~~~~~al~~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+..+.++|+..+.+++++.+.. .||+-..-.+++.+++|++-+..|++.|..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4568999999999999999864 678888999999999999999988887753
No 423
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=52.26 E-value=1.3e+02 Score=35.13 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG-------LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDAT 519 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka-------~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~ 519 (554)
=|+.-|.+|.++++|.+-++++.-|++..|.++.. .||+-.+.+... ..|....--|+..-|..- ...+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 631 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISSREEE 631 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccchHHH
Confidence 47888999999999999999999999999988764 344444444332 446666667777777541 2344
Q ss_pred HHHHHHHHHH
Q 008780 520 AALSKLKKQR 529 (554)
Q Consensus 520 ~~l~~l~~~~ 529 (554)
..++.++.+.
T Consensus 632 ~~~~~~~~~~ 641 (932)
T PRK13184 632 KFLEILYHKQ 641 (932)
T ss_pred HHHHHHHhhc
Confidence 5555555544
No 424
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.17 E-value=41 Score=36.44 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=45.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc----cCCCChh-HHHHHhhhHHHHHHHHHH-HHHHccCHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH----VNPQDDE-EGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACN 471 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~----~~p~~~e-e~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~ 471 (554)
...+++.|+...+++++..|.+++.+|-++-.- ....+.+ -..........-.+|+|. ||+..|++++|++.+.
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence 346789999999999999999999998763211 1122211 111111222233456654 7778888887666543
Q ss_pred H
Q 008780 472 K 472 (554)
Q Consensus 472 ~ 472 (554)
+
T Consensus 746 ~ 746 (794)
T KOG0276|consen 746 S 746 (794)
T ss_pred h
Confidence 3
No 425
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=52.06 E-value=89 Score=34.82 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=12.0
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 008780 487 RGMAYMALGEFEEAQRDFEM 506 (554)
Q Consensus 487 ~g~a~~~l~~~~~A~~~~~~ 506 (554)
.+.-|..+|+|+-|.+.|.+
T Consensus 771 iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHHhccchhHHHHHHHHHh
Confidence 45556666677666665543
No 426
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=51.48 E-value=90 Score=33.17 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
..|-.||...++.|+++-|..++.++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 45666666666777776666666654
No 427
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=50.93 E-value=63 Score=31.23 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHh
Q 008780 414 FELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (554)
-+.|...|+.|++.... +.|.+ .++..+.+|.+..|+. +++..+|+..+++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~--------PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTH--------PIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46899999999997554 66665 3455677888877765 6889999988887754
No 428
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.90 E-value=19 Score=33.15 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=30.8
Q ss_pred eEEEEEEEEEecCCCcEEEeccCCC---CCCCeEEEcCCCCchHHHHHHH
Q 008780 291 LLCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMCV 337 (554)
Q Consensus 291 ~V~v~y~g~~~~~~g~~~~~t~~~~---~~~~~~f~lG~~~v~~g~~~~l 337 (554)
.+++.+.| +|++|+.||.|+... +|+.++| |+|++|++...
T Consensus 134 ~lSMAn~G--pDtNGsQFfItT~~t~wLDGkhVVF----GqVl~Gmdvv~ 177 (217)
T KOG0880|consen 134 RLSMANAG--PDTNGSQFFITTVKTPWLDGKHVVF----GQVLEGMDVVR 177 (217)
T ss_pred eEeeeccC--CCCCCceEEEEecCCccccCceeEE----eeehhhHHHHH
Confidence 45666666 567799999887653 5777887 78999998865
No 429
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=49.94 E-value=1.7e+02 Score=27.22 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=64.5
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
.++-..+..+..+|++++|...+++|.+.+..+... + .- ..-.++.+.|-..+..|.+|...+.-.-.-.-
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~-------l-~~-~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ 100 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRL-------L-AG-FPELYFAGFVTTALQEYVEATLLYSILKDGRL 100 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-------H-hh-hHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC
Confidence 344556677778999999999999998865543210 0 00 23455667777788899999988876654432
Q ss_pred CCh------HH------------HHHHHHHHHHcCCHHHHHHHHHH
Q 008780 479 AHV------KG------------LYRRGMAYMALGEFEEAQRDFEM 506 (554)
Q Consensus 479 ~~~------ka------------~~~~g~a~~~l~~~~~A~~~~~~ 506 (554)
.++ .. +.|........++++.|...++-
T Consensus 101 ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ 146 (204)
T COG2178 101 PSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKF 146 (204)
T ss_pred CCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111 12 33445556678999999876543
No 430
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=49.57 E-value=2.9e+02 Score=29.91 Aligned_cols=95 Identities=8% Similarity=-0.008 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...|+.|-.-+... -++++...|++.+..-|..+.+|.......+..++|+.-...|.++|.--=+ .+.|...-..-
T Consensus 20 i~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl~YV 96 (656)
T KOG1914|consen 20 IDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYLSYV 96 (656)
T ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHHHHH
Confidence 66777776655444 8999999999999999999999999999999999999999999998874322 46777766555
Q ss_pred HHHH---HHHHHHHHHHHHhh
Q 008780 527 KQRQ---VKLKVRLENSLKGC 544 (554)
Q Consensus 527 ~~~~---~~~~~~~~~~y~~~ 544 (554)
++.+ ...++.+.++|.=.
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~ 117 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFA 117 (656)
T ss_pred HHHccCcchHHHHHHHHHHHH
Confidence 5554 22234444555433
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.74 E-value=64 Score=31.73 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=75.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-h
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A 476 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-~ 476 (554)
|+.-...|..+....+|..|..+|-+|++-+..+..+ .+.+..+ -|+-++...+...+--.|+-..+.+++ +
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d----~kAc~sL---kYmlLSkIMlN~~~evk~vl~~K~t~~~y 278 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD----VKACVSL---KYMLLSKIMLNRREEVKAVLRNKNTLKHY 278 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccch----HHHHHHH---HHHHHHHHHHhhHHHHHHHHccchhHhhh
Confidence 3444567778888899999999999999854433222 2222222 234444444444444455555556666 6
Q ss_pred CCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~--l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+.....|+...+.++-. +.+|..|++.|..-+.-|| -++..|+.|.
T Consensus 279 ~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~----~iRsHl~~LY 326 (421)
T COG5159 279 DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS----FIRSHLQYLY 326 (421)
T ss_pred hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH----HHHHHHHHHH
Confidence 77788888888888865 6789999999988776554 3455554443
No 432
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.57 E-value=1.3e+02 Score=31.99 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008780 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSL 541 (554)
Q Consensus 463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y 541 (554)
..+-...|++|+..-+.+++.|.+...-....+.+.+-...|.++|..+|+| ++++---..-.-... --+.+| ++|
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-~dLWI~aA~wefe~n~ni~saR--alf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-PDLWIYAAKWEFEINLNIESAR--ALF 163 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-chhHHhhhhhHHhhccchHHHH--HHH
Confidence 4556677888999989999999998877777788999999999999999998 666644333332222 123444 556
Q ss_pred Hhhcccccc
Q 008780 542 KGCLTRSLG 550 (554)
Q Consensus 542 ~~~f~~~~~ 550 (554)
.+-+.-+|+
T Consensus 164 lrgLR~npd 172 (568)
T KOG2396|consen 164 LRGLRFNPD 172 (568)
T ss_pred HHHhhcCCC
Confidence 555555444
No 433
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=48.49 E-value=14 Score=37.24 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=54.3
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 483 (554)
.+...++.+.+..|+..-..+++ .++.. ..+|+.++..++++.++++|+.+...+....|++...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~----~~~s~-----------tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALR----DERSK-----------TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceeccccccc----cChhh-----------CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 44455556666666655555554 33322 6789999999999999999999999999999987765
Q ss_pred HHHHHHHHHHcC
Q 008780 484 LYRRGMAYMALG 495 (554)
Q Consensus 484 ~~~~g~a~~~l~ 495 (554)
.-.+..+-....
T Consensus 346 ~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 346 EEELENVRQKKK 357 (372)
T ss_pred HHHHHHhhhHHH
Confidence 555544444433
No 434
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.29 E-value=3.4e+02 Score=28.90 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 465 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
+-++++++.|-.|.+|+-++-..+.-.+.+.+|..|+.++++.-+.+...+ .+...+..+....
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 823 (831)
T PRK15180 760 EHLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTE-PVTRQISTCITAL 823 (831)
T ss_pred hhHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCc-chHHHHHHHHHHH
Confidence 457788889999999999999999999999999999999999988865442 3444445544443
No 435
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.92 E-value=2.7e+02 Score=27.09 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=50.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccC--------HHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGE--------CRKSIE 468 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~--------~~~A~~ 468 (554)
.+.+.+=+..+++.+++..|...-.-.++.+.... +.+++ ...+++.+...... ..+|+.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-----------~~~rl~~l~~~~~~~~p~r~~fi~~ai~ 78 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-----------SIARLIELISLFPPEEPERKKFIKAAIK 78 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-----------HHHHHHHHHHHS-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 34445555777788888888777666666554432 22211 12233333333321 233344
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008780 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDF 504 (554)
Q Consensus 469 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~ 504 (554)
+. +.-...-.++..|...|..+...+++.+|..+|
T Consensus 79 WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 79 WS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33 221222357888888899999999998888766
No 436
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.45 E-value=1.8e+02 Score=33.35 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=66.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
|+..--+|.....+++++.|+..-+.++..+....+- .+..++.+++.++.-.|++.+|..+...+.++.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3334445667778899999999999999854433222 246789999999999999999999999998873
Q ss_pred ----C--CChHHHHHHHHHHHHcC
Q 008780 478 ----P--AHVKGLYRRGMAYMALG 495 (554)
Q Consensus 478 ----p--~~~ka~~~~g~a~~~l~ 495 (554)
- -...+.+..+.++...|
T Consensus 528 ~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 528 RQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHcccHHHHHHHHHHHHHHHHHhh
Confidence 2 23556777888889999
No 437
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=47.01 E-value=2e+02 Score=34.95 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
-......|..|+.+...|+|.+|+..|..|+..+..
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~ 274 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS 274 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 346778899999999999999999999999987654
No 438
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=46.13 E-value=32 Score=20.38 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=16.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
|+.+-.+|.+.+++++|...+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555666677777777776666543
No 439
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=45.20 E-value=1.1e+02 Score=34.03 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=41.2
Q ss_pred HHHccCHHHHHHHHHH------HHh-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 457 LLKLGECRKSIEACNK------VLD-----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 457 ~~kl~~~~~A~~~~~~------al~-----~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+.|.|-...|++++.. |+. ....-...+.+++.-+...|++++|-+.|-.|++++.-|
T Consensus 960 lnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 960 LNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 3455666666654432 111 123456788999999999999999999999999998654
No 440
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.74 E-value=3.5e+02 Score=29.17 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
.|+..+-..+-....+.-....|.++|++. .+--+|+.++++|... .-+.-...+++..+.+=++ ...-..|.....
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD-vv~~ReLa~~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND-VVIGRELADKYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-HHHHHHHHHHHH
Confidence 455555556666667888889999999985 4788999999999998 5566677888888888765 444444544444
Q ss_pred HHH
Q 008780 528 QRQ 530 (554)
Q Consensus 528 ~~~ 530 (554)
+.+
T Consensus 144 kik 146 (711)
T COG1747 144 KIK 146 (711)
T ss_pred Hhc
Confidence 443
No 441
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.69 E-value=2.5e+02 Score=27.72 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=70.9
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-C
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-H 480 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-~ 480 (554)
-+-+..++-..+|..|+..-+++++.+......+ +......+.+..+..-=-.|+..|++|.+++.+.-+-.+.-.+ -
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~e-e~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAE-EPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3445667788899999999999999763321111 1111222333333333345777899999999988776654322 3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
+|.+-..-..|...+++..+.+.-. +.-.+|+|.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~-~WL~~p~Nq 151 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVAS-AWLQDPSNQ 151 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHH-HHHhCcccC
Confidence 6666666677778888877766544 444467663
No 442
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.38 E-value=2.9e+02 Score=28.81 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCChHHHHHH
Q 008780 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGLYRR 487 (554)
Q Consensus 410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~~p~~~ka~~~~ 487 (554)
++..++.-+..-..|+. .+|.+ ..+++.+..++.+.. +|..-+..|+++|+.||.|-.+|..|
T Consensus 87 k~~~ld~eL~~~~~~L~----~npks-----------Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR 151 (421)
T KOG0529|consen 87 KQALLDEELKYVESALK----VNPKS-----------YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYR 151 (421)
T ss_pred HHHhhHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence 33345555666666677 67776 678888999988765 48999999999999999998887655
Q ss_pred HHHHHH-cCC---HHHHHHHHHHHHHhCCCC
Q 008780 488 GMAYMA-LGE---FEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 488 g~a~~~-l~~---~~~A~~~~~~al~l~P~~ 514 (554)
-.+... ... ..+-++...+++.-++.|
T Consensus 152 RfV~~~~~~~~~~~~~El~ftt~~I~~nfSN 182 (421)
T KOG0529|consen 152 RFVVEQAERSRNLEKEELEFTTKLINDNFSN 182 (421)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHhccchh
Confidence 444433 333 566777888888888877
No 443
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=43.95 E-value=3.7e+02 Score=27.40 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----C--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDA----N--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~--p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+..+-..+...|+..++|.+|+.....++.. | +.-+..+..-.++|+.+.+...|.+.+..|--.
T Consensus 127 Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~ 197 (411)
T KOG1463|consen 127 RQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTT 197 (411)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHh
Confidence 4556678899999999999999988887642 2 345677888899999999999999998877654
No 444
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.69 E-value=1.2e+02 Score=38.49 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=47.4
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 482 (554)
..+..-|+-+.|.+|+-++++. . ..+.. .......+.++-.+|..+++++...-.... ...+|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~----~~ek~-------~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s--- 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-R----STEKE-------KETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS--- 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-c----cccch-------hHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc---
Confidence 4556666666666666665553 1 11111 112234455555566666665554444432 111221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++..-..+...|+|..|.++|+++++.+|++
T Consensus 1452 -l~~qil~~e~~g~~~da~~Cye~~~q~~p~~ 1482 (2382)
T KOG0890|consen 1452 -LYQQILEHEASGNWADAAACYERLIQKDPDK 1482 (2382)
T ss_pred -HHHHHHHHHhhccHHHHHHHHHHhhcCCCcc
Confidence 3334444555566666666666666666653
No 445
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=42.45 E-value=56 Score=20.71 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHHh
Q 008780 482 KGLYRRG--MAYMALG-----EFEEAQRDFEMMMKV 510 (554)
Q Consensus 482 ka~~~~g--~a~~~l~-----~~~~A~~~~~~al~l 510 (554)
.|.+++| .++..-. ++++|..+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566666 4333322 456677777766554
No 446
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.05 E-value=1.6e+02 Score=24.33 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~ 495 (554)
......|...+-.|+|..|.+...++-+..+...-+|.--+++-..+|
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 334455555556666666666666665554444444554555555444
No 447
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.91 E-value=1.3e+02 Score=27.42 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 008780 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL 494 (554)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l 494 (554)
.++..+.-.|+.+.+|.|+|.+|...+.++.. |...+....+|+++.+.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 45677888999999999999999999999877 777788888888887654
No 448
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=41.87 E-value=2.7e+02 Score=29.23 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=63.8
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC--------------HHH
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--------------CRK 465 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~--------------~~~ 465 (554)
..+..|..+|--++|+.|...|+.+.+.+.. | .. ....+.++--.|.|.+.++. ++.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~----D-ka----w~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN----D-KA----WKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh----c-hh----HHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 4567899999999999999999998884321 1 11 11123444455566665552 233
Q ss_pred HHHHHHHH----HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 466 SIEACNKV----LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 466 A~~~~~~a----l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
|...|.++ .........+.+..+.++...+.+.+|...+-++...
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 44444442 1112234567777788888888888888777666654
No 449
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.45 E-value=3.9e+02 Score=27.03 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMM 507 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~l~~~~~A~~~~~~a 507 (554)
+--.+|+|..|+|+..+|++.++...+--|-. ...+-++-.++..+.-|.+....+.+.
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44578999999999999999999888777621 234455666666666555554444443
No 450
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=41.32 E-value=1.4e+02 Score=32.23 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
++-++.+|.+..+|+.+-+-+... .+++++..|++.+...|.. ..++.+.-+...+-+ .=+..++.|.+++-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s-~r~W~~yi~~El~sk--dfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSS-PRAWKLYIERELASK--DFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhh--hHHHHHHHHHHHHH
Confidence 677899999999999998888777 9999999999999999987 445554433333222 22222355666554
No 451
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=40.56 E-value=1.2e+02 Score=26.00 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDANPA---------------HVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~---------------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
+.++|.-.++.+++-.++-+|++|+.+-.+ ++-.-.++|.-+...|+-+-.+++++-|-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 567888888999999999999999865211 234567899999999999999999876655
No 452
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=40.48 E-value=63 Score=19.93 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 008780 482 KGLYRRGMAYMAL----GEFEEAQRDFEMMMK 509 (554)
Q Consensus 482 ka~~~~g~a~~~l----~~~~~A~~~~~~al~ 509 (554)
.+.+++|..|..- .+..+|+..|++|.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3455555555432 356666666666654
No 453
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=40.21 E-value=1.1e+02 Score=23.87 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008780 490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTR 547 (554)
Q Consensus 490 a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~ 547 (554)
.+..+...+=|+.++.-.|.-+|+| ..+....+...++.+ +.+ +.|.+.|+.
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d-~~Al~~y~~~~~~~~---~l~--~~Ye~~yGP 55 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDD-QEALEYYNEYSKQRK---QLK--KEYEKRYGP 55 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHH---HHH--HHHHHHhCC
Confidence 4455566777888999999999998 444444444444333 333 556666653
No 454
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.94 E-value=73 Score=34.64 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=41.1
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+.+++++++.|...+.+ .++..-|-.+|.+.+..+++..|.++|.+|..+
T Consensus 646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34578898888875544 466777999999999999999999999998775
No 455
>PF12854 PPR_1: PPR repeat
Probab=39.85 E-value=76 Score=19.93 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFE 505 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~ 505 (554)
|.-.|-.+-.+|.+.|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555666666666666666554
No 456
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.80 E-value=87 Score=31.88 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN 432 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~ 432 (554)
+-..+..+...|+.++..++|+.|...|..|...+....
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~ 75 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY 75 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999765544
No 457
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.37 E-value=2.4e+02 Score=27.64 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=60.2
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhh--HHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK--RNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~--~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
-.++++.-...|+.++|.+-+..|++.|.|+.+.-..+-.|.. +... ..+..-|++..+ .=|+-.++.++.|-
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs-IN~IlDyiStS~~m~LLQ---~FYeTTL~ALkdAK- 139 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS-INSILDYISTSKNMDLLQ---EFYETTLDALKDAK- 139 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHhhhhhhHHHH---HHHHHHHHHHHhhh-
Confidence 4567888899999999999999999999988764322211110 0000 011111222111 11232222222221
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
-+.-+.|.-..+|..++..++|..-.+.+++...-
T Consensus 140 NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 140 NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 11223444456899999999988877766665543
No 458
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.84 E-value=2.8e+02 Score=29.92 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhC------C-CChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDAN------P-AHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~------p-~~~ka~~~~g~a~~~l~~-~~~A~~~~~~al~l~P~~ 514 (554)
.-++-+|.|+..+|+-..|..++..+++.. + -.+-|+|-+|..+..++. ..+|++.+.+|-+...+.
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 346678999999999999999999888432 1 137799999999999999 999999999999987554
No 459
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=38.06 E-value=67 Score=26.88 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=37.5
Q ss_pred CCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (554)
Q Consensus 388 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~ 431 (554)
..++...+..|..+...|..++..|+.+.|--.|.+.+.+++.+
T Consensus 28 ~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 28 NIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 45677788999999999999999999999999999999988443
No 460
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=37.60 E-value=81 Score=19.03 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
.|..+..++.+.++++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456666777778888887777776544
No 461
>PRK10869 recombination and repair protein; Provisional
Probab=37.54 E-value=4.5e+02 Score=28.87 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 465 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.|+.....+-.++|......-++-.++..+.+....+..|...+..||..
T Consensus 248 ~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~ 297 (553)
T PRK10869 248 SAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNR 297 (553)
T ss_pred HHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH
Confidence 55555555656787777788888888888888888887777777777753
No 462
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=37.15 E-value=1.6e+02 Score=29.85 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+-++|+.|..+...+++-+|+..++.|+..
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 446777888888888999999999988774
No 463
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=36.98 E-value=71 Score=19.18 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=15.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
|+.+-.+|.+.+++++|...+.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566666777777666666543
No 464
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=36.64 E-value=1.7e+02 Score=24.16 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR 426 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~ 426 (554)
..+.+.+......|-..+-.|+|..|.+...++.+
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44567788888999999999999999999999977
No 465
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=36.01 E-value=3.3e+02 Score=28.00 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+-++|+.|..+...+++-+|+..++.|...
T Consensus 239 A~A~y~~A~~~~~~~~~G~aia~L~~A~~~ 268 (377)
T PF03097_consen 239 ALAHYHQALAAEEAKKYGEAIARLRRAEEA 268 (377)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 347788888888889999888888877763
No 466
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.87 E-value=3.4e+02 Score=24.64 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=20.8
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 405 GNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
=..+.++|+|+.|+..|.+|...+..
T Consensus 93 L~~~i~~~dy~~~i~dY~kak~l~~~ 118 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAKSLFEK 118 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999986554
No 467
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=35.85 E-value=3.5e+02 Score=29.58 Aligned_cols=98 Identities=8% Similarity=-0.031 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
-|..-..-..+.|++..+...+++++.--..+.+.|++.+.-....|+.+-|...+.++.++.-...+.++-.-...+..
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 34444455567888888888888888777777888888887777778888887777777776433323333333333333
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 008780 529 RQVKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 529 ~~~~~~~~~~~~y~~~f~~~ 548 (554)
......++ ..|+++-+..
T Consensus 379 ~~n~~~A~--~~lq~i~~e~ 396 (577)
T KOG1258|consen 379 NGNFDDAK--VILQRIESEY 396 (577)
T ss_pred hccHHHHH--HHHHHHHhhC
Confidence 32233333 4555555544
No 468
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.41 E-value=2.6e+02 Score=28.45 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
.++.+|.-|+.+++++.|+-.|++|++..
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 46678888999999999999999998753
No 469
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=35.02 E-value=1.8e+02 Score=31.67 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=45.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (554)
Q Consensus 460 l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~ 523 (554)
..+|.-|...|.+. .+ +-.-+|...|.+++..+++..|+.-|++|+++.-.+-+++...+.
T Consensus 569 ~ErYqlaV~mckKc-~i--D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~dii 629 (1141)
T KOG1811|consen 569 AERYQLAVEMCKKC-GI--DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDII 629 (1141)
T ss_pred HHHHHHHHHHHhhc-CC--CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHH
Confidence 45677777777664 22 345689999999999999999999999999986544344444433
No 470
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=34.81 E-value=2.5e+02 Score=28.81 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=41.5
Q ss_pred cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (554)
Q Consensus 461 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~ 506 (554)
...-+|+..++.++..+|.|....+.+.+.|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4477888899999999999999999999999999999999988753
No 471
>PRK11619 lytic murein transglycosylase; Provisional
Probab=34.59 E-value=3.1e+02 Score=30.78 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
..+..++|..+..++...-..........|.+|.++..+|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344788998887777775444446788999999999999999999999998754
No 472
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.41 E-value=5e+02 Score=26.21 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Q 008780 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AH--VKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DK 512 (554)
Q Consensus 443 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p------~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--~P 512 (554)
.+..+.+...+|..|-+.++|..|..... ++.++. .+ ...+.+.|.+|...++..+|.....++--+ +.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 34457789999999999999999876543 233332 11 234678899999999999999999887554 44
Q ss_pred CChHHHHHHHHHHHHHH
Q 008780 513 SSEPDATAALSKLKKQR 529 (554)
Q Consensus 513 ~~~~~~~~~l~~l~~~~ 529 (554)
+| +.+.-.++-|..+.
T Consensus 178 ~N-e~Lqie~kvc~ARv 193 (399)
T KOG1497|consen 178 SN-EQLQIEYKVCYARV 193 (399)
T ss_pred cC-HHHHHHHHHHHHHH
Confidence 44 55665565555444
No 473
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.16 E-value=50 Score=32.86 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=49.2
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN-VAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~n-la~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
-+.++..-+.+.|..--..|.+++. .+|.+ +.+|.- -+.-+.-.++++.|...+.++|.++|++
T Consensus 111 ~~y~~Y~~k~k~y~~~~nI~~~~l~----khP~n-----------vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 111 SQYAAYVIKKKMYGEMKNIFAECLT----KHPLN-----------VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----cCCCC-----------ceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 3444444555677778888888888 88887 333332 2333445678999999999999999999
Q ss_pred hHHHH
Q 008780 481 VKGLY 485 (554)
Q Consensus 481 ~ka~~ 485 (554)
++.|+
T Consensus 176 p~iw~ 180 (435)
T COG5191 176 PRIWI 180 (435)
T ss_pred chHHH
Confidence 88653
No 474
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.53 E-value=92 Score=28.63 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=29.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 488 g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
-.+++..|.|++|.+.|++... +|++. ..+..|..+-+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~-~~r~kL~~II~~K 157 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQ-KLRMKLLMIIREK 157 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCch-hHHHHHHHHHHcc
Confidence 3567889999999999999999 88874 3465555554433
No 475
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=32.93 E-value=2.4e+02 Score=28.96 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhc
Q 008780 415 ELAKAKYEKVLRDFNH 430 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~~ 430 (554)
.++..+|++|.+.+..
T Consensus 211 ~q~a~~Y~~A~~~l~~ 226 (353)
T cd09243 211 YETAKLFQKADDSLSS 226 (353)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3455566666665543
No 476
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.45 E-value=6.1e+02 Score=26.57 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
++|.-+.-.|....-+.+|..|.+++-+|++ ..|.+.. ...+..+..-+...-+-+|++.+-.-+++..++
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~r----kapq~~a-----lGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ 315 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALR----KAPQHAA-----LGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR 315 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHH----hCcchhh-----hhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH
Confidence 6788888888888889999999999999998 6775411 111222333333444557887776665554333
Q ss_pred hCCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC
Q 008780 476 ANPAHVKGLYRRGMAYM--ALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~--~l~~~~~A~~~~~~al~l~P~~ 514 (554)
. +...||.+.+|-. .+.+|.+-+..|..-+..|-..
T Consensus 316 k---sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty 353 (493)
T KOG2581|consen 316 K---SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTY 353 (493)
T ss_pred H---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcc
Confidence 2 3455777766644 4667778887777777766543
No 477
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.44 E-value=3.1e+02 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=34.5
Q ss_pred CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC
Q 008780 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435 (554)
Q Consensus 389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~ 435 (554)
.+.+++-..-....++|..|+.+|+++++..++-.||. +.+..
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~----vcgqp 114 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIV----VCGQP 114 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHh----hcCCH
Confidence 45566666666778999999999999999999999998 55544
No 478
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=32.33 E-value=2.3e+02 Score=21.73 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHH
Q 008780 495 GEFEEAQRDFEMMMK 509 (554)
Q Consensus 495 ~~~~~A~~~~~~al~ 509 (554)
++|++|...|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 566666666655555
No 479
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=32.31 E-value=1.3e+02 Score=22.78 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhCCC
Q 008780 500 AQRDFEMMMKVDKS 513 (554)
Q Consensus 500 A~~~~~~al~l~P~ 513 (554)
|++.|.+++..+|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 34445555555664
No 480
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=31.48 E-value=6.6e+02 Score=26.71 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008780 413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM 492 (554)
Q Consensus 413 ~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~ 492 (554)
+-..|+..|..||. .+|..+. ..+...........++-...+.+|+.++..||. ||--.+.++..
T Consensus 327 rrR~Ale~ylaALq----a~pprp~---------~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpk--kAaqmk~qV~t 391 (615)
T KOG3540|consen 327 RRRDALENYLAALQ----ADPPRPH---------RVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPK--KAAQMKSQVMT 391 (615)
T ss_pred HHHHHHHHHHHHHh----cCCCChH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHH
Confidence 34556666776666 5554321 111112222222344555566677777777764 33333444444
Q ss_pred HcCCHHH
Q 008780 493 ALGEFEE 499 (554)
Q Consensus 493 ~l~~~~~ 499 (554)
.|.-.++
T Consensus 392 hLrvIee 398 (615)
T KOG3540|consen 392 HLRVIEE 398 (615)
T ss_pred HHHHHHH
Confidence 4443333
No 481
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.86 E-value=1e+02 Score=23.77 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 008780 494 LGEFEEAQRDFEMMMK 509 (554)
Q Consensus 494 l~~~~~A~~~~~~al~ 509 (554)
.|+|++|+..|+.|++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4455555544444443
No 482
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.43 E-value=5.2e+02 Score=30.85 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=20.9
Q ss_pred CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC
Q 008780 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN 432 (554)
Q Consensus 389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~ 432 (554)
+++.|-+.....++ .-..++++=+.+.=+..|.+||..|..+.
T Consensus 865 kDPkEyLP~L~el~-~m~~~~rkF~ID~~L~ry~~AL~hLs~~~ 907 (1265)
T KOG1920|consen 865 KDPKEYLPFLNELK-KMETLLRKFKIDDYLKRYEDALSHLSECG 907 (1265)
T ss_pred cChHHHHHHHHHHh-hchhhhhheeHHHHHHHHHHHHHHHHHcC
Confidence 34555554444444 22233344444555556666666554444
No 483
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=29.96 E-value=59 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.8
Q ss_pred hHHhhcCCCCCCcEEEEEEeC
Q 008780 91 GLLEGIPTMLKGEVSMFKMKP 111 (554)
Q Consensus 91 g~~~~l~~m~~Ge~~~~~ip~ 111 (554)
-+..|+.+|+.||++.++..+
T Consensus 36 El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 36 ELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHhhcCceeEEEEec
Confidence 688999999999999998765
No 484
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=29.75 E-value=2e+02 Score=31.04 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=49.5
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
.....+...|.-.+|+++..-+...++..-|-. .-.....+..+|..++.||...+.+.+|..+++++|.
T Consensus 156 ~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~---t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 156 TICRHLMTAGHSAKVLEYLLWASICMESSVPLL---TVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHhcchhh---hcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344455566777788887776665554422211 1123455688999999999999999999999999984
No 485
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.52 E-value=1.3e+03 Score=29.98 Aligned_cols=88 Identities=9% Similarity=0.077 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008780 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~ 493 (554)
..+-+-.+++++..+.. +++ ..+....+|++.|....+.|+++.|..+.-.|.+.. -+.++.-+|+.+-.
T Consensus 1645 ~~epILa~RRs~l~~~~-~~~-------~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRM-RSN-------LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ 1714 (2382)
T ss_pred HHhHHHHHHHHHHHHhc-ccc-------ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh
Confidence 44555556665543221 221 233457899999999999999999999999999887 58899999999999
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 008780 494 LGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 494 l~~~~~A~~~~~~al~l~ 511 (554)
.|+-..|+..++.-++++
T Consensus 1715 ~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hccHHHHHHHHHHHHHhh
Confidence 999999999999999763
No 486
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=29.19 E-value=2.4e+02 Score=28.94 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
+-|+|+.|..+...++|-+|+..|+.|+.
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44677788887778888899988888877
No 487
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.55 E-value=90 Score=31.82 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=65.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH-hh--
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL-DA-- 476 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al-~~-- 476 (554)
..+..++...+.+....-++.-.+|+..+..... ....++..+..|.++.++|.-++.+.+--+ ++
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-----------qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~ 172 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-----------QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICK 172 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhccCcc-----------chhhhHHHHHHHHHHhhcccccCCccchhHHHHhc
Confidence 3455666666666666666666666665432211 235678888888999999887776554422 12
Q ss_pred -CCCC----h-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 477 -NPAH----V-KGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 477 -~p~~----~-ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+|++ . ..+|+-|..+..+++|+.|+-.|..++-.
T Consensus 173 ~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 173 ANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred cCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3332 2 23455678888999999999999988764
No 488
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=28.42 E-value=2.8e+02 Score=24.71 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH------------------------HHHhhhHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG------------------------KVFVGKRNLLHLN 452 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~------------------------~~~~~~~~~~~~n 452 (554)
.+-.....+......|+.+.|+....+|...+......++.-. .............
T Consensus 1 ~A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~ 80 (155)
T PF10938_consen 1 RAMRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIK 80 (155)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHH
Q ss_pred HHHHHHHccCHHHHHHHHHHHH--------hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACNKVL--------DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al--------~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
.+.-+++.|+...|....+.+- .+.=........++..+...|+|.+|...+..|+.
T Consensus 81 ~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 81 TANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
No 489
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.98 E-value=97 Score=31.56 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDF 504 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~ 504 (554)
-+...|.-++.+++|+.|...+..|..+- -++..++|..|.+++.+++++.+.-..
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556777788999999999999998763 356889999999999999998877544
No 490
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=27.53 E-value=2.6e+02 Score=23.84 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=31.6
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~ 435 (554)
.+++-..-....+.|..+..+|++.+|..+|-+|+. ..|..
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~----V~~qP 96 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALK----VCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCH
Confidence 444444556667899999999999999999999999 55544
No 491
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.49 E-value=1.1e+02 Score=23.86 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
.|+.|..+.++||..|. .|+.++|+.+|+++++
T Consensus 4 ~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 35666666666666653 3555555555555554
No 492
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=27.20 E-value=6.8e+02 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+-++|+.|..+...+++-+|+..|+.|..+
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~ 284 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALEL 284 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 346788888888889999999999988763
No 493
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.07 E-value=5.4e+02 Score=28.33 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..+.+.+..+.+....+.-+.-....+.+++..+..+-..++.+.|-++|++....+|+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE 75 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc
Confidence 333344445555444444444444455566666666666666666666666666666654
No 494
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=4e+02 Score=26.48 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
..++-|+|..|.+.++-+.+.++|.+.++.+- +-.-+..|+|..|-...-.++.++..+..++-.-
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 56889999999999999999999999887542 1233456777777766666666666655555443
No 495
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=25.52 E-value=6.9e+02 Score=24.99 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=41.7
Q ss_pred HccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 459 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
..++|.+.+..+++.+...|-+...++..++++..+| ++.+...+...+.
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~ 160 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELA 160 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999 5666555544443
No 496
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=25.07 E-value=3e+02 Score=20.72 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhCCC
Q 008780 500 AQRDFEMMMKVDKS 513 (554)
Q Consensus 500 A~~~~~~al~l~P~ 513 (554)
|+..|.+++..+|+
T Consensus 32 a~e~l~~~~~~~~~ 45 (75)
T cd02656 32 ALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHhccCCC
Confidence 33445555555654
No 497
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=24.64 E-value=1.4e+02 Score=32.92 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=37.9
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
|...++|.+|...+++.-++- ...|+..|+-+.+..+|++|.+.|-+|=+
T Consensus 783 Hve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred eeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 344567888877776654433 35788999999999999999999988754
No 498
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.63 E-value=3.3e+02 Score=20.98 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=13.6
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 008780 493 ALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 493 ~l~~~~~A~~~~~~al~l 510 (554)
..|+|++|+..|..|++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 467788888888887774
No 499
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.59 E-value=7.4e+02 Score=25.06 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=68.5
Q ss_pred CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHH
Q 008780 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468 (554)
Q Consensus 389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~ 468 (554)
.++++.+ +......+..|-+.++|..|.....- +. ++... ...-.+.+...+..+|..|++.++-.+|..
T Consensus 96 isfeEqv--~~irl~LAsiYE~Eq~~~~aaq~L~~-I~----~~tg~---~~~d~~~kl~l~iriarlyLe~~d~veae~ 165 (399)
T KOG1497|consen 96 ISFEEQV--ASIRLHLASIYEKEQNWRDAAQVLVG-IP----LDTGQ---KAYDVEQKLLLCIRIARLYLEDDDKVEAEA 165 (399)
T ss_pred ccHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHhc-cC----cccch---hhhhhHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4566553 44556778888899999888765422 22 22211 011122345678899999999999999999
Q ss_pred HHHHHH--hhCCCChHHHHHH----HHHHHHcCCHHHHHHHHHHHHHh
Q 008780 469 ACNKVL--DANPAHVKGLYRR----GMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 469 ~~~~al--~~~p~~~ka~~~~----g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+.+++- ..+..|....... |+++=..++|-+|...|.+....
T Consensus 166 ~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 166 YINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998863 3344554443332 33444466777777666655543
No 500
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.16 E-value=1.6e+02 Score=18.64 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 008780 496 EFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 496 ~~~~A~~~~~~al~l~P~ 513 (554)
+++.|...|++.+...|+
T Consensus 2 E~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE 19 (32)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 455666666666666654
Done!