Query 008780
Match_columns 554
No_of_seqs 517 out of 4256
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jxv_A 70 kDa peptidyl-prolyl 100.0 1.5E-64 5E-69 517.1 29.0 343 23-382 5-355 (356)
2 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 7.9E-55 2.7E-59 463.0 43.3 382 151-549 29-417 (457)
3 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 3.9E-43 1.3E-47 373.0 28.6 373 27-503 29-407 (457)
4 1q1c_A FK506-binding protein 4 100.0 3.3E-41 1.1E-45 331.0 29.6 223 27-262 49-277 (280)
5 3jxv_A 70 kDa peptidyl-prolyl 100.0 1.5E-38 5E-43 324.8 29.0 226 26-259 124-355 (356)
6 1q1c_A FK506-binding protein 4 100.0 2.5E-38 8.6E-43 310.5 27.9 223 151-387 49-279 (280)
7 2if4_A ATFKBP42; FKBP-like, al 100.0 9.9E-39 3.4E-43 325.8 23.7 273 265-551 47-332 (338)
8 1p5q_A FKBP52, FK506-binding p 100.0 8.7E-35 3E-39 296.3 35.5 273 260-548 18-295 (336)
9 2if4_A ATFKBP42; FKBP-like, al 99.9 3.8E-25 1.3E-29 225.2 17.3 275 152-514 48-332 (338)
10 3kz7_A FK506-binding protein 3 99.9 7.8E-24 2.7E-28 181.2 14.9 114 27-143 2-118 (119)
11 3o5q_A Peptidyl-prolyl CIS-tra 99.9 7.7E-24 2.6E-28 183.2 14.2 116 22-145 12-127 (128)
12 1yat_A FK506 binding protein; 99.9 1.1E-23 3.6E-28 178.5 14.8 112 25-144 2-113 (113)
13 3o5e_A Peptidyl-prolyl CIS-tra 99.9 9.8E-24 3.4E-28 186.1 15.0 112 26-145 32-143 (144)
14 1r9h_A FKB-6, FK506 binding pr 99.9 1.4E-23 4.9E-28 183.1 14.4 114 27-148 12-125 (135)
15 2y78_A Peptidyl-prolyl CIS-tra 99.9 3.2E-23 1.1E-27 180.0 15.5 113 22-143 21-133 (133)
16 2ppn_A FK506-binding protein 1 99.9 3.9E-23 1.3E-27 173.4 14.2 107 30-144 1-107 (107)
17 2lgo_A FKBP; infectious diseas 99.9 4.3E-23 1.5E-27 178.6 13.0 114 22-143 15-130 (130)
18 1jvw_A Macrophage infectivity 99.9 4.7E-23 1.6E-27 185.2 13.5 115 22-146 30-144 (167)
19 4dip_A Peptidyl-prolyl CIS-tra 99.9 1.3E-22 4.4E-27 175.0 15.6 116 22-145 5-123 (125)
20 2f4e_A ATFKBP42; FKBP-like, al 99.9 1.4E-22 4.6E-27 185.2 15.3 122 19-147 39-162 (180)
21 3b7x_A FK506-binding protein 6 99.9 2.6E-23 9E-28 181.1 9.8 115 21-144 18-133 (134)
22 1p5q_A FKBP52, FK506-binding p 99.9 1.2E-21 4.2E-26 199.1 23.7 267 149-510 21-294 (336)
23 2vn1_A 70 kDa peptidylprolyl i 99.9 2.8E-22 9.6E-27 173.8 15.5 117 21-145 7-127 (129)
24 2jwx_A FKBP38NTD, FK506-bindin 99.9 5.2E-22 1.8E-26 176.4 17.0 115 21-147 34-151 (157)
25 1u79_A FKBP-type peptidyl-prol 99.9 8.5E-23 2.9E-27 176.9 11.0 119 20-143 3-128 (129)
26 3oe2_A Peptidyl-prolyl CIS-tra 99.9 2.1E-22 7.3E-27 187.6 13.8 109 22-144 110-218 (219)
27 2lkn_A AH receptor-interacting 99.9 6.7E-23 2.3E-27 182.4 9.9 119 25-147 6-160 (165)
28 1fd9_A Protein (macrophage inf 99.9 3E-22 1E-26 186.9 14.3 113 22-145 99-211 (213)
29 3uf8_A Ubiquitin-like protein 99.9 4.3E-22 1.5E-26 186.3 15.3 111 24-143 99-209 (209)
30 2awg_A 38 kDa FK-506 binding p 99.9 7.3E-22 2.5E-26 168.4 14.8 109 24-144 7-117 (118)
31 2lkn_A AH receptor-interacting 99.9 1.1E-22 3.9E-27 180.9 9.2 120 264-387 7-163 (165)
32 1r9h_A FKB-6, FK506 binding pr 99.9 8.1E-22 2.8E-26 172.0 14.2 120 151-271 12-135 (135)
33 2d9f_A FK506-binding protein 8 99.9 1.3E-21 4.4E-26 170.6 13.4 113 24-148 11-126 (135)
34 1q6h_A FKBP-type peptidyl-prol 99.9 1.6E-21 5.5E-26 183.2 14.6 111 22-144 114-224 (224)
35 3kz7_A FK506-binding protein 3 99.9 4.1E-21 1.4E-25 164.2 14.9 106 152-257 3-118 (119)
36 3o5e_A Peptidyl-prolyl CIS-tra 99.9 2.8E-21 9.5E-26 170.4 13.7 116 259-381 25-142 (144)
37 2f4e_A ATFKBP42; FKBP-like, al 99.9 4.9E-21 1.7E-25 174.9 14.4 127 265-398 47-179 (180)
38 4dip_A Peptidyl-prolyl CIS-tra 99.8 1.5E-20 5.2E-25 162.0 14.8 111 149-259 8-123 (125)
39 3o5q_A Peptidyl-prolyl CIS-tra 99.8 1.2E-20 4E-25 163.2 14.1 108 151-258 17-126 (128)
40 3rkv_A Putative peptidylprolyl 99.8 1.3E-20 4.3E-25 170.1 15.0 153 391-546 4-161 (162)
41 3b7x_A FK506-binding protein 6 99.8 3.9E-21 1.3E-25 167.4 9.9 116 259-381 18-133 (134)
42 2ppn_A FK506-binding protein 1 99.8 2.3E-20 8E-25 156.3 13.6 104 154-257 1-106 (107)
43 1yat_A FK506 binding protein; 99.8 3.4E-20 1.2E-24 156.9 14.5 106 152-257 5-112 (113)
44 2pbc_A FK506-binding protein 2 99.8 2.7E-20 9.4E-25 154.4 13.5 96 43-146 4-99 (102)
45 2y78_A Peptidyl-prolyl CIS-tra 99.8 3.9E-20 1.3E-24 160.5 14.4 107 150-257 25-133 (133)
46 3oe2_A Peptidyl-prolyl CIS-tra 99.8 6.3E-20 2.2E-24 170.9 13.7 103 151-258 115-218 (219)
47 2vn1_A 70 kDa peptidylprolyl i 99.8 1.4E-19 4.7E-24 156.8 14.6 114 261-382 10-127 (129)
48 2awg_A 38 kDa FK-506 binding p 99.8 1.4E-19 4.7E-24 154.2 13.5 113 259-381 5-117 (118)
49 2lgo_A FKBP; infectious diseas 99.8 1.3E-19 4.4E-24 156.7 13.1 107 151-257 20-130 (130)
50 2jwx_A FKBP38NTD, FK506-bindin 99.8 1.5E-19 5E-24 160.6 13.3 116 260-385 36-152 (157)
51 3uf8_A Ubiquitin-like protein 99.8 3.6E-19 1.2E-23 166.4 15.9 109 148-257 99-209 (209)
52 2d9f_A FK506-binding protein 8 99.8 6.5E-20 2.2E-24 159.9 9.9 122 260-391 10-132 (135)
53 4gco_A Protein STI-1; structur 99.8 1.2E-18 4.2E-23 150.5 17.0 115 395-525 10-124 (126)
54 1u79_A FKBP-type peptidyl-prol 99.8 1.7E-19 5.9E-24 156.0 10.6 107 150-257 9-128 (129)
55 1jvw_A Macrophage infectivity 99.8 3.3E-19 1.1E-23 160.2 12.3 120 264-394 34-153 (167)
56 1fd9_A Protein (macrophage inf 99.8 1.1E-18 3.8E-23 162.8 13.7 107 150-259 103-211 (213)
57 1q6h_A FKBP-type peptidyl-prol 99.8 1.3E-18 4.5E-23 163.4 14.2 104 151-257 119-223 (224)
58 2hr2_A Hypothetical protein; a 99.8 7.6E-19 2.6E-23 155.8 11.7 137 389-530 2-150 (159)
59 2pbc_A FK506-binding protein 2 99.8 1.8E-18 6.1E-23 143.4 11.8 94 167-260 4-99 (102)
60 1ihg_A Cyclophilin 40; ppiase 99.8 1.9E-17 6.3E-22 170.3 21.2 155 389-546 214-370 (370)
61 2fbn_A 70 kDa peptidylprolyl i 99.8 2.1E-17 7.3E-22 153.9 18.0 169 373-548 13-187 (198)
62 4gcn_A Protein STI-1; structur 99.7 1.4E-16 4.9E-21 137.6 14.2 115 394-525 4-125 (127)
63 3upv_A Heat shock protein STI1 99.7 8.3E-16 2.8E-20 131.8 15.3 116 397-528 3-124 (126)
64 4dt4_A FKBP-type 16 kDa peptid 99.7 1.5E-15 5.2E-20 135.7 15.6 84 44-143 24-107 (169)
65 3gyz_A Chaperone protein IPGC; 99.6 4.4E-15 1.5E-19 132.3 16.5 105 395-514 33-137 (151)
66 2kr7_A FKBP-type peptidyl-prol 99.6 1.7E-14 5.9E-19 127.5 17.4 83 44-143 6-89 (151)
67 3sz7_A HSC70 cochaperone (SGT) 99.6 7.5E-15 2.6E-19 132.2 15.4 122 394-530 7-129 (164)
68 3pr9_A FKBP-type peptidyl-prol 99.6 6.3E-15 2.2E-19 130.4 13.2 86 45-143 2-96 (157)
69 1hxv_A Trigger factor; FKBP fo 99.6 9.5E-16 3.3E-20 128.6 6.9 84 45-144 30-113 (113)
70 2k8i_A SLYD, peptidyl-prolyl C 99.6 1.3E-14 4.5E-19 130.4 13.5 70 169-238 3-72 (171)
71 1ix5_A FKBP; ppiase, isomerase 99.6 2.2E-15 7.4E-20 133.3 7.3 87 45-143 2-97 (151)
72 2vgx_A Chaperone SYCD; alterna 99.6 3.8E-14 1.3E-18 125.7 15.5 116 396-527 19-134 (148)
73 2kfw_A FKBP-type peptidyl-prol 99.6 1.4E-14 4.9E-19 132.7 12.8 82 45-143 3-84 (196)
74 2xcb_A PCRH, regulatory protei 99.6 4.7E-14 1.6E-18 123.9 15.7 120 395-530 15-134 (142)
75 4ga2_A E3 SUMO-protein ligase 99.6 2.9E-14 9.8E-19 126.8 13.3 113 397-525 30-143 (150)
76 1hxv_A Trigger factor; FKBP fo 99.6 5.1E-15 1.7E-19 124.1 7.3 84 167-257 28-112 (113)
77 2k8i_A SLYD, peptidyl-prolyl C 99.6 2.8E-14 9.7E-19 128.3 12.6 70 45-119 3-72 (171)
78 3q49_B STIP1 homology and U bo 99.5 5.4E-14 1.8E-18 121.8 13.9 118 397-530 8-130 (137)
79 4gyw_A UDP-N-acetylglucosamine 99.5 8.7E-14 3E-18 154.5 17.4 138 395-550 6-143 (723)
80 3urz_A Uncharacterized protein 99.5 1.7E-13 5.8E-18 128.7 16.3 124 398-526 4-132 (208)
81 3prb_A FKBP-type peptidyl-prol 99.5 2E-14 6.7E-19 134.9 8.8 74 45-119 2-84 (231)
82 3prb_A FKBP-type peptidyl-prol 99.5 3.7E-14 1.3E-18 133.0 10.6 69 169-238 2-84 (231)
83 1a17_A Serine/threonine protei 99.5 1.4E-12 4.9E-17 116.2 20.2 119 391-525 6-124 (166)
84 1elw_A TPR1-domain of HOP; HOP 99.5 4.6E-13 1.6E-17 111.7 15.7 114 397-526 3-116 (118)
85 4dt4_A FKBP-type 16 kDa peptid 99.5 7.4E-14 2.5E-18 124.7 10.8 83 168-257 24-107 (169)
86 4ga2_A E3 SUMO-protein ligase 99.5 3E-14 1E-18 126.6 8.1 111 404-530 3-113 (150)
87 2kr7_A FKBP-type peptidyl-prol 99.5 2.9E-13 1E-17 119.5 14.3 84 167-257 5-89 (151)
88 3cgm_A SLYD, peptidyl-prolyl C 99.5 7.1E-13 2.4E-17 117.6 16.0 77 45-143 3-79 (158)
89 1hxi_A PEX5, peroxisome target 99.5 2.4E-13 8.1E-18 116.1 11.5 100 400-514 19-118 (121)
90 3pr9_A FKBP-type peptidyl-prol 99.5 4.5E-14 1.5E-18 125.0 7.0 71 169-240 2-86 (157)
91 4i17_A Hypothetical protein; T 99.5 1.2E-12 4E-17 124.1 16.8 134 399-550 8-149 (228)
92 2vyi_A SGTA protein; chaperone 99.5 3.4E-12 1.2E-16 108.4 17.9 120 392-527 6-125 (131)
93 2lni_A Stress-induced-phosphop 99.5 1.1E-12 3.8E-17 112.2 14.4 117 395-527 13-129 (133)
94 2dba_A Smooth muscle cell asso 99.5 1.7E-12 5.8E-17 113.3 15.8 117 397-526 27-143 (148)
95 1zu2_A Mitochondrial import re 99.4 2.9E-13 1E-17 119.6 10.6 104 410-529 14-138 (158)
96 2pl2_A Hypothetical conserved 99.4 9.3E-13 3.2E-17 124.5 14.5 132 400-550 41-183 (217)
97 2pl2_A Hypothetical conserved 99.4 2.1E-12 7.3E-17 122.0 16.4 94 446-543 117-210 (217)
98 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-12 9.5E-17 117.1 16.5 146 398-550 5-173 (184)
99 2xev_A YBGF; tetratricopeptide 99.4 2.1E-12 7.3E-17 110.3 14.7 115 400-527 4-121 (129)
100 2h6f_A Protein farnesyltransfe 99.4 7.5E-13 2.5E-17 136.3 13.6 118 397-530 96-214 (382)
101 4gyw_A UDP-N-acetylglucosamine 99.4 7.5E-13 2.6E-17 147.0 14.6 117 398-530 43-159 (723)
102 1elr_A TPR2A-domain of HOP; HO 99.4 3E-12 1E-16 108.8 14.8 118 396-530 2-126 (131)
103 2kfw_A FKBP-type peptidyl-prol 99.4 5.3E-13 1.8E-17 122.3 9.8 72 169-240 3-74 (196)
104 1ix5_A FKBP; ppiase, isomerase 99.4 2E-13 6.8E-18 120.6 6.6 72 169-240 2-87 (151)
105 2c2l_A CHIP, carboxy terminus 99.4 3.7E-12 1.3E-16 125.5 15.0 102 398-514 4-105 (281)
106 2h6f_A Protein farnesyltransfe 99.4 3.8E-12 1.3E-16 131.0 14.4 116 397-528 130-246 (382)
107 4i17_A Hypothetical protein; T 99.4 1E-11 3.5E-16 117.6 16.2 116 399-530 43-167 (228)
108 1wao_1 Serine/threonine protei 99.4 2.2E-12 7.5E-17 137.0 12.0 117 395-527 3-119 (477)
109 3vtx_A MAMA; tetratricopeptide 99.4 2.1E-11 7.1E-16 111.2 16.9 113 398-514 39-174 (184)
110 1na0_A Designed protein CTPR3; 99.4 4E-11 1.4E-15 100.7 17.4 113 398-526 9-121 (125)
111 3cgm_A SLYD, peptidyl-prolyl C 99.4 3.4E-12 1.2E-16 113.2 11.0 78 169-258 3-80 (158)
112 3k9i_A BH0479 protein; putativ 99.3 1.5E-12 5E-17 110.1 7.6 93 410-514 2-94 (117)
113 3urz_A Uncharacterized protein 99.3 1.9E-11 6.4E-16 114.6 15.7 107 403-526 59-200 (208)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.6E-11 5.6E-16 114.6 14.8 134 396-549 4-152 (213)
115 3gyz_A Chaperone protein IPGC; 99.3 8.9E-13 3E-17 117.3 5.6 101 447-550 36-136 (151)
116 2kck_A TPR repeat; tetratricop 99.3 1.3E-11 4.3E-16 101.9 11.8 100 400-514 8-110 (112)
117 4gco_A Protein STI-1; structur 99.3 1.3E-11 4.3E-16 106.1 11.4 101 447-550 13-113 (126)
118 2fo7_A Synthetic consensus TPR 99.3 5.9E-11 2E-15 100.8 15.3 134 399-550 2-135 (136)
119 2e2e_A Formate-dependent nitri 99.3 3.3E-11 1.1E-15 109.3 14.4 114 398-527 44-160 (177)
120 2vsy_A XCC0866; transferase, g 99.3 6.3E-11 2.1E-15 128.6 17.2 136 398-551 23-161 (568)
121 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.7E-10 5.8E-15 111.6 18.3 105 396-515 41-145 (275)
122 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.1E-15 104.3 16.6 135 398-550 42-176 (186)
123 3qky_A Outer membrane assembly 99.2 4.8E-11 1.6E-15 115.6 13.6 106 397-514 14-130 (261)
124 3qky_A Outer membrane assembly 99.2 2E-10 6.8E-15 111.2 17.9 140 398-551 52-228 (261)
125 2e2e_A Formate-dependent nitri 99.2 2.6E-11 9E-16 109.9 10.3 132 401-550 13-147 (177)
126 4abn_A Tetratricopeptide repea 99.2 9.5E-11 3.2E-15 124.3 16.0 134 397-549 101-252 (474)
127 2yhc_A BAMD, UPF0169 lipoprote 99.2 1E-10 3.6E-15 110.8 14.6 106 398-515 4-130 (225)
128 2vgx_A Chaperone SYCD; alterna 99.2 1.7E-11 5.9E-16 108.4 8.2 112 419-548 8-119 (148)
129 2l6j_A TPR repeat-containing p 99.2 6.4E-12 2.2E-16 104.1 5.0 95 397-506 3-103 (111)
130 3uq3_A Heat shock protein STI1 99.2 1.5E-10 5.2E-15 110.5 15.0 111 397-523 138-254 (258)
131 3ieg_A DNAJ homolog subfamily 99.2 3.5E-10 1.2E-14 113.4 18.1 121 398-530 234-354 (359)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.3E-10 4.5E-15 108.3 13.9 102 398-514 37-154 (213)
133 3as5_A MAMA; tetratricopeptide 99.2 1.7E-10 5.7E-15 104.0 14.2 135 397-549 7-141 (186)
134 4abn_A Tetratricopeptide repea 99.2 1.2E-10 4.2E-15 123.5 15.0 116 399-530 171-306 (474)
135 1w26_A Trigger factor, TF; cha 99.2 3.3E-11 1.1E-15 125.2 10.1 87 45-147 158-244 (432)
136 2pzi_A Probable serine/threoni 99.2 4E-11 1.4E-15 133.0 11.6 133 399-550 434-566 (681)
137 2q7f_A YRRB protein; TPR, prot 99.2 4.4E-10 1.5E-14 106.5 16.9 102 398-514 57-158 (243)
138 2q7f_A YRRB protein; TPR, prot 99.2 2.6E-10 8.7E-15 108.1 15.1 135 398-550 91-225 (243)
139 3uq3_A Heat shock protein STI1 99.2 3.3E-10 1.1E-14 108.2 15.4 144 398-548 79-237 (258)
140 3u4t_A TPR repeat-containing p 99.2 1.7E-10 5.9E-15 111.6 13.5 99 447-549 74-173 (272)
141 2gw1_A Mitochondrial precursor 99.2 2.8E-10 9.5E-15 120.5 16.2 117 394-526 2-118 (514)
142 3ieg_A DNAJ homolog subfamily 99.2 2.8E-10 9.4E-15 114.2 15.2 110 397-522 2-114 (359)
143 4eqf_A PEX5-related protein; a 99.2 1.7E-10 6E-15 117.0 13.7 129 403-549 182-312 (365)
144 2vq2_A PILW, putative fimbrial 99.2 5.5E-10 1.9E-14 104.2 16.1 99 447-548 76-177 (225)
145 2ho1_A Type 4 fimbrial biogene 99.2 6.4E-10 2.2E-14 106.3 16.8 144 399-549 72-240 (252)
146 1w3b_A UDP-N-acetylglucosamine 99.2 4.6E-10 1.6E-14 115.0 16.2 100 447-549 237-336 (388)
147 1hxi_A PEX5, peroxisome target 99.1 6.9E-10 2.4E-14 94.4 14.4 99 449-550 19-117 (121)
148 1w3b_A UDP-N-acetylglucosamine 99.1 4.6E-10 1.6E-14 115.0 15.5 135 398-550 237-371 (388)
149 2vq2_A PILW, putative fimbrial 99.1 9.5E-10 3.3E-14 102.5 16.4 83 447-530 113-196 (225)
150 2xcb_A PCRH, regulatory protei 99.1 9.1E-11 3.1E-15 102.6 8.5 100 447-549 18-117 (142)
151 4eqf_A PEX5-related protein; a 99.1 3.7E-10 1.3E-14 114.5 14.1 102 398-514 213-314 (365)
152 2y4t_A DNAJ homolog subfamily 99.1 1.1E-09 3.7E-14 114.1 18.0 120 399-530 258-377 (450)
153 2ho1_A Type 4 fimbrial biogene 99.1 5.5E-10 1.9E-14 106.7 14.4 126 397-527 36-186 (252)
154 3fp2_A TPR repeat-containing p 99.1 3.5E-10 1.2E-14 120.7 14.4 112 387-514 14-125 (537)
155 2kat_A Uncharacterized protein 99.1 7E-10 2.4E-14 92.9 13.3 83 416-513 3-85 (115)
156 2y4t_A DNAJ homolog subfamily 99.1 1E-09 3.4E-14 114.4 17.1 105 395-514 23-127 (450)
157 3cv0_A Peroxisome targeting si 99.1 4.4E-10 1.5E-14 111.3 13.4 135 398-549 172-317 (327)
158 1fch_A Peroxisomal targeting s 99.1 3.5E-10 1.2E-14 114.4 12.8 118 398-530 217-344 (368)
159 2pzi_A Probable serine/threoni 99.1 1.5E-10 5.2E-15 128.4 10.7 111 398-525 467-577 (681)
160 4gcn_A Protein STI-1; structur 99.1 3.5E-10 1.2E-14 97.1 10.7 100 447-548 8-113 (127)
161 2r5s_A Uncharacterized protein 99.1 2.8E-10 9.5E-15 103.4 10.5 130 400-546 8-172 (176)
162 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.4E-09 4.7E-14 103.0 15.8 140 398-551 41-217 (225)
163 3hym_B Cell division cycle pro 99.1 1.3E-09 4.4E-14 108.1 16.1 129 404-550 165-302 (330)
164 1t11_A Trigger factor, TF; hel 99.1 6.9E-11 2.4E-15 121.1 6.8 90 45-150 161-250 (392)
165 2fo7_A Synthetic consensus TPR 99.1 1.7E-09 5.8E-14 91.6 14.0 102 398-514 35-136 (136)
166 3u4t_A TPR repeat-containing p 99.1 9E-10 3.1E-14 106.4 13.6 115 398-528 74-188 (272)
167 1fch_A Peroxisomal targeting s 99.1 1.3E-09 4.4E-14 110.3 15.3 102 399-515 65-166 (368)
168 3mkr_A Coatomer subunit epsilo 99.1 1.9E-09 6.4E-14 106.6 16.0 113 398-514 130-268 (291)
169 3upv_A Heat shock protein STI1 99.1 1.3E-09 4.3E-14 92.8 12.8 99 447-548 4-102 (126)
170 3qou_A Protein YBBN; thioredox 99.1 5.7E-10 2E-14 110.0 12.1 133 397-546 116-283 (287)
171 1qqe_A Vesicular transport pro 99.1 1.1E-09 3.7E-14 108.2 14.1 143 396-549 75-230 (292)
172 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.1E-09 3.8E-14 105.8 13.8 133 403-549 10-142 (275)
173 1w26_A Trigger factor, TF; cha 99.1 3.5E-10 1.2E-14 117.4 10.6 86 167-258 156-241 (432)
174 3hym_B Cell division cycle pro 99.0 1.9E-09 6.5E-14 106.9 14.8 144 400-550 24-191 (330)
175 3sz7_A HSC70 cochaperone (SGT) 99.0 1.6E-09 5.4E-14 96.9 12.7 101 447-550 11-111 (164)
176 1qqe_A Vesicular transport pro 99.0 1.7E-09 6E-14 106.7 12.9 145 394-549 33-189 (292)
177 3n71_A Histone lysine methyltr 99.0 8.2E-09 2.8E-13 109.2 18.8 127 391-526 302-442 (490)
178 3edt_B KLC 2, kinesin light ch 99.0 2.8E-09 9.4E-14 102.9 13.8 141 396-546 41-197 (283)
179 2vsy_A XCC0866; transferase, g 99.0 1.4E-09 4.7E-14 117.9 12.9 122 411-550 2-123 (568)
180 3mkr_A Coatomer subunit epsilo 99.0 7.9E-09 2.7E-13 102.1 17.1 88 459-549 178-266 (291)
181 2kc7_A BFR218_protein; tetratr 99.0 4.6E-10 1.6E-14 91.1 6.6 88 403-513 5-93 (99)
182 3fp2_A TPR repeat-containing p 99.0 3.9E-09 1.3E-13 112.6 15.0 146 396-548 241-408 (537)
183 2hr2_A Hypothetical protein; a 99.0 2.1E-09 7E-14 95.1 10.5 99 447-548 11-132 (159)
184 3ma5_A Tetratricopeptide repea 99.0 4E-09 1.4E-13 86.2 11.4 67 447-513 7-73 (100)
185 1na3_A Designed protein CTPR2; 99.0 8.3E-09 2.8E-13 81.7 12.9 79 447-526 9-87 (91)
186 1na3_A Designed protein CTPR2; 99.0 6.3E-09 2.2E-13 82.4 11.9 84 397-495 8-91 (91)
187 2kck_A TPR repeat; tetratricop 99.0 2E-09 6.8E-14 88.4 9.2 101 447-550 6-109 (112)
188 3cv0_A Peroxisome targeting si 99.0 5.6E-09 1.9E-13 103.3 14.0 126 407-550 147-272 (327)
189 3q49_B STIP1 homology and U bo 98.9 6.9E-09 2.4E-13 89.1 12.5 101 447-550 9-109 (137)
190 4g1t_A Interferon-induced prot 98.9 4.1E-09 1.4E-13 110.7 12.6 122 398-526 51-182 (472)
191 3edt_B KLC 2, kinesin light ch 98.9 8.8E-09 3E-13 99.3 13.4 108 395-510 82-198 (283)
192 1pc2_A Mitochondria fission pr 98.9 7.7E-09 2.6E-13 90.3 11.3 102 412-529 12-118 (152)
193 3u3w_A Transcriptional activat 98.9 7.1E-09 2.4E-13 102.2 12.3 108 396-511 153-267 (293)
194 2l6j_A TPR repeat-containing p 98.9 1.5E-08 5.3E-13 83.3 12.5 68 447-514 4-71 (111)
195 3ro3_A PINS homolog, G-protein 98.9 1.7E-08 6E-13 88.2 13.1 108 395-511 6-119 (164)
196 3qou_A Protein YBBN; thioredox 98.9 4.2E-09 1.4E-13 103.8 10.0 108 398-509 151-283 (287)
197 2ifu_A Gamma-SNAP; membrane fu 98.9 5.3E-09 1.8E-13 104.0 10.7 106 397-512 75-186 (307)
198 1t11_A Trigger factor, TF; hel 98.9 1.2E-09 4.1E-14 111.8 6.0 86 167-258 159-244 (392)
199 2xpi_A Anaphase-promoting comp 98.9 2.2E-08 7.5E-13 108.3 16.1 146 398-550 407-582 (597)
200 1elw_A TPR1-domain of HOP; HOP 98.9 2.9E-08 9.9E-13 82.0 13.3 101 447-550 4-104 (118)
201 3rkv_A Putative peptidylprolyl 98.9 9.4E-09 3.2E-13 91.6 10.4 101 447-550 11-129 (162)
202 2gw1_A Mitochondrial precursor 98.8 1.5E-08 5.2E-13 107.1 13.3 73 449-522 414-489 (514)
203 2xpi_A Anaphase-promoting comp 98.8 3.6E-08 1.2E-12 106.6 16.6 132 398-547 373-504 (597)
204 1a17_A Serine/threonine protei 98.8 2.3E-08 7.8E-13 88.5 12.4 98 398-510 47-146 (166)
205 4a1s_A PINS, partner of inscut 98.8 2.3E-08 7.9E-13 102.8 14.2 105 395-510 45-155 (411)
206 3ulq_A Response regulator aspa 98.8 2.7E-08 9.1E-13 101.8 14.3 127 395-530 140-278 (383)
207 2xev_A YBGF; tetratricopeptide 98.8 2.7E-08 9.3E-13 84.3 12.0 100 449-550 4-108 (129)
208 2lni_A Stress-induced-phosphop 98.8 2.4E-08 8.2E-13 84.7 11.4 100 447-549 16-115 (133)
209 2kc7_A BFR218_protein; tetratr 98.8 2.6E-08 9E-13 80.5 10.8 66 450-515 3-69 (99)
210 3qww_A SET and MYND domain-con 98.8 5.4E-08 1.9E-12 101.3 15.9 125 392-525 292-430 (433)
211 2ond_A Cleavage stimulation fa 98.8 4E-08 1.4E-12 97.5 14.4 136 399-550 100-273 (308)
212 3nf1_A KLC 1, kinesin light ch 98.8 3.3E-08 1.1E-12 96.9 13.1 109 395-511 108-225 (311)
213 3nf1_A KLC 1, kinesin light ch 98.8 2.8E-08 9.6E-13 97.4 12.4 142 395-546 66-223 (311)
214 2ond_A Cleavage stimulation fa 98.8 7.3E-08 2.5E-12 95.7 14.8 101 400-514 52-167 (308)
215 3ro2_A PINS homolog, G-protein 98.8 6E-08 2.1E-12 95.6 13.7 106 397-513 4-115 (338)
216 3u3w_A Transcriptional activat 98.8 4.4E-08 1.5E-12 96.4 12.5 124 398-530 115-250 (293)
217 2qfc_A PLCR protein; TPR, HTH, 98.8 3.3E-08 1.1E-12 97.4 11.6 107 397-511 154-267 (293)
218 2dba_A Smooth muscle cell asso 98.8 8E-08 2.7E-12 83.1 12.8 101 447-550 28-131 (148)
219 3gw4_A Uncharacterized protein 98.8 5.5E-08 1.9E-12 89.2 12.4 106 397-511 25-137 (203)
220 2vyi_A SGTA protein; chaperone 98.8 1.1E-07 3.8E-12 79.8 13.3 101 446-549 11-111 (131)
221 2ifu_A Gamma-SNAP; membrane fu 98.8 3.2E-08 1.1E-12 98.4 11.4 108 396-514 114-227 (307)
222 1na0_A Designed protein CTPR3; 98.8 1.1E-07 3.6E-12 79.3 12.9 100 447-549 9-108 (125)
223 3q15_A PSP28, response regulat 98.7 4.3E-08 1.5E-12 100.2 12.4 108 396-512 180-292 (378)
224 3q15_A PSP28, response regulat 98.7 6.4E-08 2.2E-12 98.9 13.1 141 395-546 138-289 (378)
225 1wao_1 Serine/threonine protei 98.7 9.2E-09 3.2E-13 109.0 6.9 102 398-514 40-154 (477)
226 1ouv_A Conserved hypothetical 98.7 2.6E-07 8.9E-12 89.5 16.5 77 447-528 74-158 (273)
227 3qwp_A SET and MYND domain-con 98.7 1.4E-07 4.7E-12 98.3 15.2 126 395-529 284-423 (429)
228 3sf4_A G-protein-signaling mod 98.7 6.5E-08 2.2E-12 98.6 12.6 106 397-513 8-119 (406)
229 3ulq_A Response regulator aspa 98.7 6.9E-08 2.3E-12 98.7 12.6 108 395-511 181-294 (383)
230 1dce_A Protein (RAB geranylger 98.7 1.7E-07 5.7E-12 101.4 16.1 115 398-528 63-190 (567)
231 1dce_A Protein (RAB geranylger 98.7 1.9E-07 6.6E-12 100.9 16.3 140 395-552 25-178 (567)
232 2fbn_A 70 kDa peptidylprolyl i 98.7 1.6E-07 5.4E-12 86.5 13.3 100 447-549 38-153 (198)
233 3ro3_A PINS homolog, G-protein 98.7 1E-07 3.5E-12 83.2 11.4 108 397-513 48-161 (164)
234 4g1t_A Interferon-induced prot 98.7 1.6E-07 5.3E-12 98.5 14.6 102 398-514 247-367 (472)
235 2c2l_A CHIP, carboxy terminus 98.7 8.8E-08 3E-12 94.0 11.8 100 447-549 4-103 (281)
236 3sf4_A G-protein-signaling mod 98.6 1.5E-07 5.2E-12 95.9 12.6 108 397-513 186-299 (406)
237 3dra_A Protein farnesyltransfe 98.6 3.1E-07 1.1E-11 91.0 14.2 120 415-552 50-180 (306)
238 3dra_A Protein farnesyltransfe 98.6 3.1E-07 1.1E-11 91.0 14.2 111 398-524 67-188 (306)
239 4f3v_A ESX-1 secretion system 98.6 1.6E-07 5.3E-12 91.4 11.7 110 400-524 137-249 (282)
240 2qfc_A PLCR protein; TPR, HTH, 98.6 1.7E-06 5.9E-11 84.9 18.9 110 396-514 73-191 (293)
241 1ouv_A Conserved hypothetical 98.6 7.9E-07 2.7E-11 86.0 16.2 93 447-546 110-214 (273)
242 3ro2_A PINS homolog, G-protein 98.6 1.8E-07 6.3E-12 92.1 11.5 140 397-547 182-332 (338)
243 3k9i_A BH0479 protein; putativ 98.6 1.7E-07 6E-12 78.4 9.6 79 395-488 24-102 (117)
244 1elr_A TPR2A-domain of HOP; HO 98.6 2.4E-07 8.2E-12 77.9 10.4 101 447-549 4-110 (131)
245 4f3v_A ESX-1 secretion system 98.6 1.4E-07 4.9E-12 91.6 9.7 134 399-550 103-240 (282)
246 3bee_A Putative YFRE protein; 98.6 4.2E-07 1.4E-11 73.1 10.8 68 447-514 6-76 (93)
247 1ihg_A Cyclophilin 40; ppiase 98.6 2.6E-07 8.8E-12 94.5 11.8 92 397-503 272-363 (370)
248 3dss_A Geranylgeranyl transfer 98.6 2E-06 6.7E-11 85.9 17.8 100 414-529 90-192 (331)
249 1zu2_A Mitochondrial import re 98.6 1.8E-07 6.1E-12 82.5 8.9 89 459-550 14-123 (158)
250 3q7a_A Farnesyltransferase alp 98.6 1E-06 3.5E-11 88.4 15.3 125 410-552 66-201 (349)
251 4a1s_A PINS, partner of inscut 98.5 3.3E-07 1.1E-11 94.1 12.0 106 398-512 223-334 (411)
252 3dss_A Geranylgeranyl transfer 98.5 1.4E-06 4.6E-11 87.0 15.7 112 398-525 108-236 (331)
253 3rjv_A Putative SEL1 repeat pr 98.5 3.8E-07 1.3E-11 85.3 11.1 129 397-527 17-173 (212)
254 3rjv_A Putative SEL1 repeat pr 98.5 1.1E-06 3.8E-11 82.0 13.4 76 447-526 125-210 (212)
255 2r5s_A Uncharacterized protein 98.5 3E-07 1E-11 83.0 8.8 108 397-509 39-172 (176)
256 3gw4_A Uncharacterized protein 98.5 9.2E-07 3.2E-11 80.9 11.9 109 395-511 63-177 (203)
257 2v5f_A Prolyl 4-hydroxylase su 98.5 1.4E-06 4.9E-11 71.4 11.8 83 398-488 5-87 (104)
258 3ma5_A Tetratricopeptide repea 98.4 6.2E-07 2.1E-11 72.9 8.8 67 398-479 7-73 (100)
259 2v5f_A Prolyl 4-hydroxylase su 98.4 1.9E-06 6.6E-11 70.7 11.6 80 447-527 5-91 (104)
260 1nzn_A CGI-135 protein, fissio 98.4 2.7E-06 9.1E-11 71.5 12.3 102 412-529 15-121 (126)
261 2ooe_A Cleavage stimulation fa 98.4 1.8E-06 6.1E-11 92.4 14.3 103 398-514 321-424 (530)
262 3q7a_A Farnesyltransferase alp 98.4 1.3E-06 4.3E-11 87.7 11.7 112 398-525 88-210 (349)
263 2ooe_A Cleavage stimulation fa 98.3 6.4E-06 2.2E-10 88.1 16.1 118 415-549 255-387 (530)
264 1klx_A Cysteine rich protein B 98.3 9.6E-06 3.3E-10 70.2 13.6 89 404-511 31-127 (138)
265 1hz4_A MALT regulatory protein 98.3 7.6E-06 2.6E-10 82.8 14.9 108 397-513 52-167 (373)
266 3n71_A Histone lysine methyltr 98.3 2.5E-06 8.5E-11 90.2 10.9 109 394-510 347-464 (490)
267 2kat_A Uncharacterized protein 98.3 3.8E-06 1.3E-10 69.6 9.6 80 465-547 3-82 (115)
268 2xm6_A Protein corresponding t 98.2 2E-05 6.8E-10 83.3 15.0 78 447-527 363-451 (490)
269 1hz4_A MALT regulatory protein 98.1 2.2E-05 7.5E-10 79.4 13.4 107 395-511 11-123 (373)
270 3o48_A Mitochondria fission 1 98.0 5E-05 1.7E-09 63.9 11.9 83 447-530 40-126 (134)
271 3ly7_A Transcriptional activat 98.0 6.6E-05 2.3E-09 75.2 14.2 111 399-514 197-343 (372)
272 1xi4_A Clathrin heavy chain; a 98.0 5.1E-05 1.7E-09 87.3 14.2 123 400-546 1197-1344(1630)
273 1klx_A Cysteine rich protein B 97.9 7.5E-05 2.5E-09 64.4 11.6 94 411-528 8-105 (138)
274 1y8m_A FIS1; mitochondria, unk 97.9 0.00012 4E-09 62.5 12.1 81 447-528 39-123 (144)
275 2xm6_A Protein corresponding t 97.9 0.00017 5.7E-09 76.1 16.5 94 398-510 39-144 (490)
276 1pc2_A Mitochondria fission pr 97.9 3.6E-05 1.2E-09 67.0 8.6 79 398-490 32-114 (152)
277 3u64_A Protein TP_0956; tetrat 97.8 5.5E-05 1.9E-09 72.9 9.8 88 413-513 178-272 (301)
278 3e4b_A ALGK; tetratricopeptide 97.8 0.00013 4.3E-09 76.4 13.6 93 400-510 178-280 (452)
279 4b4t_Q 26S proteasome regulato 97.8 0.00011 3.6E-09 75.8 11.5 116 396-511 53-205 (434)
280 3gty_X Trigger factor, TF; cha 97.6 0.00011 3.8E-09 76.0 9.2 76 45-148 155-230 (433)
281 3ffl_A Anaphase-promoting comp 97.6 0.00088 3E-08 58.7 13.3 119 400-526 22-165 (167)
282 3u64_A Protein TP_0956; tetrat 97.6 0.00039 1.3E-08 67.0 11.8 64 462-525 178-248 (301)
283 3bee_A Putative YFRE protein; 97.6 0.00034 1.2E-08 55.8 9.7 70 398-482 6-78 (93)
284 1xi4_A Clathrin heavy chain; a 97.6 0.00032 1.1E-08 80.9 12.9 108 402-514 1053-1167(1630)
285 3gty_X Trigger factor, TF; cha 97.6 0.00013 4.6E-09 75.4 9.1 73 168-258 154-226 (433)
286 1b89_A Protein (clathrin heavy 97.6 0.00025 8.6E-09 72.9 11.0 112 394-530 144-255 (449)
287 3e4b_A ALGK; tetratricopeptide 97.6 0.00065 2.2E-08 71.0 14.4 91 399-510 249-351 (452)
288 4b4t_Q 26S proteasome regulato 97.6 0.00045 1.6E-08 70.9 12.8 103 400-511 137-239 (434)
289 3mv2_B Coatomer subunit epsilo 97.6 0.00033 1.1E-08 68.8 10.8 93 404-514 182-286 (310)
290 3qwp_A SET and MYND domain-con 97.6 0.00016 5.6E-09 75.0 9.0 94 393-494 324-426 (429)
291 3qww_A SET and MYND domain-con 97.4 0.00035 1.2E-08 72.5 9.5 75 394-476 336-411 (433)
292 2ff4_A Probable regulatory pro 97.4 0.0038 1.3E-07 63.8 16.7 128 395-524 112-253 (388)
293 3mv2_B Coatomer subunit epsilo 97.3 0.0016 5.3E-08 64.0 11.9 100 401-513 103-210 (310)
294 1b89_A Protein (clathrin heavy 97.3 0.00018 6.3E-09 73.9 5.4 86 400-514 124-209 (449)
295 1nzn_A CGI-135 protein, fissio 97.0 0.0022 7.6E-08 53.7 8.4 45 446-490 73-117 (126)
296 1y8m_A FIS1; mitochondria, unk 97.0 0.007 2.4E-07 51.5 11.1 76 401-490 42-120 (144)
297 3ffl_A Anaphase-promoting comp 96.9 0.0041 1.4E-07 54.5 9.3 95 396-491 61-165 (167)
298 3o48_A Mitochondria fission 1 96.9 0.0063 2.1E-07 51.1 9.7 45 446-490 77-121 (134)
299 4h7y_A Dual specificity protei 96.8 0.02 6.9E-07 49.1 12.6 128 390-526 12-139 (161)
300 4e6h_A MRNA 3'-END-processing 96.8 0.023 7.9E-07 62.2 16.1 145 402-549 382-535 (679)
301 3ly7_A Transcriptional activat 96.5 0.0094 3.2E-07 59.7 9.7 131 415-550 194-342 (372)
302 4e6h_A MRNA 3'-END-processing 96.4 0.014 4.7E-07 64.0 11.4 134 401-550 437-573 (679)
303 3mv2_A Coatomer subunit alpha; 95.3 0.1 3.5E-06 50.6 10.8 120 395-514 111-240 (325)
304 3kae_A CDC27, possible protein 95.3 0.27 9.4E-06 42.8 12.1 68 447-514 62-147 (242)
305 4gns_B Protein CSD3, chitin bi 95.2 0.13 4.6E-06 56.4 12.7 60 448-507 338-397 (754)
306 3mkr_B Coatomer subunit alpha; 95.2 0.17 5.8E-06 49.1 11.9 117 397-513 101-230 (320)
307 2uy1_A Cleavage stimulation fa 94.7 0.72 2.5E-05 48.3 16.5 109 400-514 215-353 (493)
308 3txn_A 26S proteasome regulato 94.3 0.3 1E-05 49.4 11.8 98 403-509 104-209 (394)
309 4gns_B Protein CSD3, chitin bi 93.3 0.17 5.7E-06 55.7 8.2 59 400-473 339-397 (754)
310 1zbp_A Hypothetical protein VP 93.3 0.52 1.8E-05 44.6 10.4 60 456-515 6-65 (273)
311 4b4t_R RPN7, 26S proteasome re 92.7 0.28 9.4E-06 50.5 8.5 99 401-511 134-238 (429)
312 1zbp_A Hypothetical protein VP 91.8 2.1 7E-05 40.5 12.5 64 405-483 4-67 (273)
313 2uy1_A Cleavage stimulation fa 91.7 1.5 5.3E-05 45.7 13.0 111 399-530 287-398 (493)
314 1ya0_A SMG-7 transcript varian 91.6 1.2 4.1E-05 46.5 11.8 79 446-525 151-229 (497)
315 2v6y_A AAA family ATPase, P60 91.4 0.43 1.5E-05 36.6 6.1 42 389-430 1-43 (83)
316 4g26_A Pentatricopeptide repea 91.2 3.3 0.00011 43.3 14.8 100 411-525 83-185 (501)
317 4g26_A Pentatricopeptide repea 89.7 4.4 0.00015 42.3 14.3 99 401-513 108-209 (501)
318 2cpt_A SKD1 protein, vacuolar 88.7 1.5 5.2E-05 35.9 7.7 43 388-430 7-50 (117)
319 4b4t_P 26S proteasome regulato 87.7 8.4 0.00029 39.5 14.5 106 396-510 135-247 (445)
320 2v6x_A Vacuolar protein sortin 87.6 1.2 4.2E-05 34.1 6.2 42 389-430 4-45 (85)
321 1ya0_A SMG-7 transcript varian 86.9 2.5 8.5E-05 44.1 9.9 80 399-493 153-232 (497)
322 2w2u_A Hypothetical P60 katani 86.7 1.7 5.8E-05 33.2 6.4 42 389-430 9-51 (83)
323 1wfd_A Hypothetical protein 15 86.2 2.8 9.4E-05 32.8 7.6 38 393-430 10-47 (93)
324 3mkq_B Coatomer subunit alpha; 84.0 4.7 0.00016 35.6 8.8 28 398-425 34-61 (177)
325 4a5x_A MITD1, MIT domain-conta 82.5 3.7 0.00013 31.5 6.6 35 396-430 14-48 (86)
326 2crb_A Nuclear receptor bindin 82.2 4.5 0.00015 31.1 6.8 37 394-430 11-47 (97)
327 2dl1_A Spartin; SPG20, MIT, st 81.9 6.8 0.00023 31.7 8.1 74 392-465 16-96 (116)
328 2ff4_A Probable regulatory pro 81.3 7.7 0.00026 38.9 10.6 72 452-524 120-213 (388)
329 2wb7_A PT26-6P; extra chromoso 81.0 5.6 0.00019 40.5 9.0 92 391-510 422-516 (526)
330 4b4t_S RPN3, 26S proteasome re 80.2 3.5 0.00012 42.9 7.5 68 447-514 231-303 (523)
331 3mkq_A Coatomer beta'-subunit; 79.8 6 0.00021 43.4 10.0 26 448-473 682-707 (814)
332 4fhn_B Nucleoporin NUP120; pro 78.3 4.2 0.00014 47.3 8.3 106 402-507 846-964 (1139)
333 3txn_A 26S proteasome regulato 78.3 14 0.00046 37.2 11.1 115 397-511 18-169 (394)
334 3mkq_A Coatomer beta'-subunit; 78.1 3.9 0.00013 45.0 7.8 19 453-471 700-718 (814)
335 3lpz_A GET4 (YOR164C homolog); 77.6 32 0.0011 33.5 13.1 110 392-504 29-159 (336)
336 3mkq_B Coatomer subunit alpha; 76.2 6.3 0.00022 34.7 7.0 47 458-509 16-62 (177)
337 1qsa_A Protein (soluble lytic 74.9 18 0.0006 38.8 11.5 54 456-509 294-347 (618)
338 3kae_A CDC27, possible protein 74.1 34 0.0012 29.9 10.6 53 451-508 37-89 (242)
339 3spa_A Mtrpol, DNA-directed RN 69.3 44 0.0015 37.9 13.0 101 398-510 127-230 (1134)
340 4h7y_A Dual specificity protei 67.7 21 0.00072 30.5 7.9 94 449-546 15-122 (161)
341 1wy6_A Hypothetical protein ST 67.0 35 0.0012 28.7 8.8 51 461-511 105-155 (172)
342 2crb_A Nuclear receptor bindin 66.9 8.5 0.00029 29.6 4.7 27 482-508 16-42 (97)
343 2vkj_A TM1634; membrane protei 63.2 30 0.001 26.4 7.0 31 396-426 51-81 (106)
344 3t5v_B Nuclear mRNA export pro 61.5 25 0.00087 35.9 8.8 103 412-514 140-254 (455)
345 2ijq_A Hypothetical protein; s 59.5 45 0.0016 28.7 8.7 71 399-476 33-104 (161)
346 2npm_A 14-3-3 domain containin 58.3 30 0.001 32.3 8.0 53 415-475 173-226 (260)
347 2wpv_A GET4, UPF0363 protein Y 56.6 1.1E+02 0.0039 29.3 12.1 108 395-505 30-158 (312)
348 3eab_A Spastin; spastin, MIT, 55.5 48 0.0017 25.3 7.2 67 394-460 12-85 (89)
349 2o8p_A 14-3-3 domain containin 55.3 47 0.0016 30.3 8.5 71 398-476 120-197 (227)
350 2rpa_A Katanin P60 ATPase-cont 53.9 52 0.0018 24.5 7.0 38 389-430 7-44 (78)
351 2br9_A 14-3-3E, 14-3-3 protein 53.4 40 0.0014 31.0 7.8 53 415-475 147-201 (234)
352 4b4t_P 26S proteasome regulato 51.6 52 0.0018 33.5 9.3 72 397-476 176-247 (445)
353 4b4t_R RPN7, 26S proteasome re 51.2 34 0.0012 34.7 7.8 63 448-510 132-197 (429)
354 3spa_A Mtrpol, DNA-directed RN 51.1 96 0.0033 35.2 11.6 97 447-546 127-229 (1134)
355 2dl1_A Spartin; SPG20, MIT, st 50.1 24 0.00082 28.5 5.0 61 462-530 18-81 (116)
356 1o9d_A 14-3-3-like protein C; 49.0 50 0.0017 30.9 7.8 52 415-474 152-205 (260)
357 3uzd_A 14-3-3 protein gamma; s 48.8 52 0.0018 30.5 7.8 54 414-475 147-202 (248)
358 3ax2_A Mitochondrial import re 48.5 60 0.0021 23.8 6.6 38 394-435 13-50 (73)
359 3ax2_A Mitochondrial import re 48.0 49 0.0017 24.3 6.0 29 486-514 22-50 (73)
360 3ubw_A 14-3-3E, 14-3-3 protein 47.0 58 0.002 30.4 7.8 53 415-475 173-227 (261)
361 2ymb_A MITD1, MIT domain-conta 45.7 4.4 0.00015 38.0 0.0 39 393-431 18-56 (257)
362 3iqu_A 14-3-3 protein sigma; s 44.3 61 0.0021 29.8 7.5 54 414-475 149-204 (236)
363 3r9m_A BRO1 domain-containing 43.7 1.8E+02 0.006 28.7 11.5 111 394-510 110-282 (376)
364 3t5x_A PCI domain-containing p 42.5 52 0.0018 29.5 6.7 53 446-498 13-70 (203)
365 4gq2_M Nucleoporin NUP120; bet 40.3 37 0.0013 38.4 6.6 53 453-509 816-868 (950)
366 2rkl_A Vacuolar protein sortin 38.6 44 0.0015 22.8 4.1 39 391-429 13-51 (53)
367 2yin_A DOCK2, dedicator of cyt 38.1 63 0.0021 32.8 7.3 96 400-496 37-141 (436)
368 1om2_A Protein (mitochondrial 37.6 71 0.0024 24.8 5.7 38 390-427 12-49 (95)
369 2wm9_A Dedicator of cytokinesi 37.1 50 0.0017 33.5 6.3 102 399-501 12-141 (428)
370 3efz_A 14-3-3 protein; 14-3-3, 36.7 67 0.0023 30.1 6.5 55 414-476 168-226 (268)
371 2cpt_A SKD1 protein, vacuolar 35.5 1E+02 0.0035 24.8 6.8 15 500-514 44-58 (117)
372 3rau_A Tyrosine-protein phosph 35.4 2E+02 0.007 28.1 10.4 30 481-510 252-281 (363)
373 2vkj_A TM1634; membrane protei 35.3 1.5E+02 0.005 22.6 8.1 28 484-511 56-83 (106)
374 3t5x_A PCI domain-containing p 35.2 93 0.0032 27.7 7.2 31 483-513 16-46 (203)
375 4b4t_S RPN3, 26S proteasome re 34.4 1.9E+02 0.0064 30.0 10.1 105 395-513 267-376 (523)
376 4fhn_B Nucleoporin NUP120; pro 34.3 46 0.0016 38.4 6.2 53 452-508 817-869 (1139)
377 4gq2_M Nucleoporin NUP120; bet 34.1 2.1E+02 0.0072 32.1 11.5 63 450-512 843-928 (950)
378 4abx_A DNA repair protein RECN 32.4 1.6E+02 0.0056 25.3 8.2 62 464-525 73-134 (175)
379 1zb1_A BRO1 protein; AIP1, BRO 31.5 1.7E+02 0.0057 29.0 9.2 29 482-510 258-286 (392)
380 2ijq_A Hypothetical protein; s 30.9 2.3E+02 0.0079 24.2 8.6 59 452-510 37-104 (161)
381 2cfu_A SDSA1; SDS-hydrolase, l 30.2 71 0.0024 34.4 6.5 50 448-497 450-499 (658)
382 2cfu_A SDSA1; SDS-hydrolase, l 30.2 98 0.0033 33.3 7.6 50 480-530 448-497 (658)
383 3lvg_A Clathrin heavy chain 1; 30.0 0.17 6E-06 52.0 -13.0 72 402-501 148-219 (624)
384 3htx_A HEN1; HEN1, small RNA m 29.2 55 0.0019 36.3 5.2 64 287-350 562-649 (950)
385 2v6y_A AAA family ATPase, P60 29.0 1.8E+02 0.0061 21.6 8.0 17 498-514 35-51 (83)
386 3bqo_A Telomeric repeat-bindin 28.4 1.9E+02 0.0066 25.6 7.6 43 449-491 119-161 (211)
387 2wpv_A GET4, UPF0363 protein Y 28.1 4E+02 0.014 25.4 12.8 62 448-509 135-216 (312)
388 2xze_A STAM-binding protein; h 27.5 76 0.0026 26.7 4.9 46 388-433 30-75 (146)
389 1om2_A Protein (mitochondrial 27.3 79 0.0027 24.5 4.4 27 452-478 25-51 (95)
390 2cwy_A Hypothetical protein TT 27.1 2.1E+02 0.0072 21.9 7.2 63 402-475 5-67 (94)
391 3bu8_A Telomeric repeat-bindin 26.0 91 0.0031 28.1 5.2 39 453-491 120-158 (235)
392 2jpu_A ORF C02003 protein; sol 25.7 51 0.0018 27.2 3.3 32 395-426 4-35 (129)
393 3myv_A SUSD superfamily protei 25.2 1.3E+02 0.0043 30.5 7.1 29 447-475 190-218 (454)
394 2w2u_A Hypothetical P60 katani 24.5 2.2E+02 0.0075 21.2 8.6 15 500-514 45-59 (83)
395 3lew_A SUSD-like carbohydrate 24.1 76 0.0026 32.7 5.2 30 447-476 203-232 (495)
396 2rpa_A Katanin P60 ATPase-cont 23.9 61 0.0021 24.1 3.1 26 450-475 15-40 (78)
397 3qtm_A Uncharacterized protein 23.8 4.5E+02 0.015 24.5 11.7 105 390-494 14-132 (346)
398 2oo2_A Hypothetical protein AF 23.3 1.3E+02 0.0046 22.7 5.0 37 391-427 28-64 (86)
399 3kez_A Putative sugar binding 23.2 1.4E+02 0.0047 30.3 6.9 29 447-475 196-224 (461)
400 2zan_A Vacuolar protein sortin 23.1 17 0.0006 37.0 0.0 39 393-431 6-44 (444)
401 4a5x_A MITD1, MIT domain-conta 22.5 2.5E+02 0.0085 21.1 7.4 22 451-472 20-41 (86)
402 2pmr_A Uncharacterized protein 22.4 1.5E+02 0.0051 22.5 5.1 36 391-426 32-67 (87)
403 3ph0_C ASCG; type III secretio 22.1 2E+02 0.0069 19.9 6.3 52 449-501 8-60 (61)
404 2v6x_A Vacuolar protein sortin 22.1 1.2E+02 0.0042 22.6 4.7 14 500-513 39-52 (85)
No 1
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=100.00 E-value=1.5e-64 Score=517.11 Aligned_cols=343 Identities=32% Similarity=0.527 Sum_probs=212.2
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCC
Q 008780 23 RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG 102 (554)
Q Consensus 23 ~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G 102 (554)
...++++||+|+++++|+|..+|+.||.|.+||++++.||++|++|+. ++.|+.|.+|.+++++||+++|.+|++|
T Consensus 5 ~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~~~lG~g~~i~g~e~~l~gm~~G 80 (356)
T 3jxv_A 5 ENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKG 80 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEccc----CCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence 356789999999999999976699999999999999999999999997 6789999999999999999999999999
Q ss_pred cEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEE
Q 008780 103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK 182 (554)
Q Consensus 103 e~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~ 182 (554)
+++.|+|||+++||..+.+ +.||++++|+|+|+|++|..+.++..|.++.++++++|.|+.+|..||.|+|||+++
T Consensus 81 e~~~~~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~ 156 (356)
T 3jxv_A 81 ENALFTIPPELAYGESGSP----PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEAR 156 (356)
T ss_dssp -----------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEE
T ss_pred CEEEEEEChHHhCCCCCCC----CCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEE
Confidence 9999999999999999875 689999999999999999988888899999999999999999999999999999999
Q ss_pred eCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCC------CCCCcceEEEEEeeee
Q 008780 183 TGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP------VVEGCEEVHFEVELVH 256 (554)
Q Consensus 183 ~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~------~ip~~~~l~~~v~l~~ 256 (554)
+.||++|+++. ++.|.+|.+++++||+++|.+|++||+++++|||+++||+.+.+ .||++++|+|+|+|++
T Consensus 157 l~dgt~~~~~~---~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~ 233 (356)
T 3jxv_A 157 LEDGTVVSKSE---GVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVS 233 (356)
T ss_dssp ETTSCEEEEEE---EEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEE
T ss_pred ECCCCEEeccC---CEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEE
Confidence 99999999873 79999999999999999999999999999999999999985333 5999999999999999
Q ss_pred eeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHH
Q 008780 257 LIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMC 336 (554)
Q Consensus 257 ~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~ 336 (554)
|....|++.|++++++++++|.|.. .|..++.|+|||+|++.| |++|+++... +++|+.|.+|.+++|+||+.+
T Consensus 234 ~~~v~dv~~d~~~~~~i~~~g~g~~---~~~~gd~V~v~y~g~l~d--G~~fd~~~~~-~~~p~~f~~G~g~~i~G~e~~ 307 (356)
T 3jxv_A 234 WKTVTEIGDDKKILKKVLKEXEGYE---RPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQEPFEFKTDEEAVIEGLDRA 307 (356)
T ss_dssp EECEEEESTTCCEEEEEEECCBSSC---CCCTTCEEEEEEEEEESS--SCEEEEESCT-TSCCCEEETTTTSSCHHHHHH
T ss_pred EecccccccccceeEEeeecccccC---CCCCCCEEEEEEEEEECC--CCEEeecccc-CCcCEEEEECCCccchHHHHH
Confidence 9999999999999999999999953 358999999999999977 9998666544 578999999999999999999
Q ss_pred HhcCCcCcEEEEEeCCCCccccCCC--CCCCCCCCeEEEEEEEccccc
Q 008780 337 VRLMLPGEIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEK 382 (554)
Q Consensus 337 l~~M~~GE~~~~~i~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~ 382 (554)
|.+|++||++.|+|||.++||..+. ...||++++++|+|+|+++.+
T Consensus 308 l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~ 355 (356)
T 3jxv_A 308 VLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355 (356)
T ss_dssp HTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred HhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence 9999999999999999999998874 356899999999999998864
No 2
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=100.00 E-value=7.9e-55 Score=463.03 Aligned_cols=382 Identities=29% Similarity=0.467 Sum_probs=317.4
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~ 229 (554)
.+.|+.++++++|.|...|..||.|+|||++++.||++|+|+. .++|+.|.+|.++++|||+++|.+|++||+++|+||
T Consensus 29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~ 108 (457)
T 1kt0_A 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK 108 (457)
T ss_dssp ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence 5679999999999996669999999999999999999999986 468999999999999999999999999999999999
Q ss_pred CCccCCCC-CCCCCCCcceEEEEEeeeeeeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEE
Q 008780 230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVF 308 (554)
Q Consensus 230 ~~~~~g~~-~~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~ 308 (554)
|+++||.. .++.||++++++|+|+|++|... |++.|++++++++++|.|.. .|..|+.|+|||+|++ + |++|
T Consensus 109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~---~p~~g~~V~v~y~g~~-~--g~~f 181 (457)
T 1kt0_A 109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYS---NPNEGATVEIHLEGRC-G--GRMF 181 (457)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSC---CCCTTCEEEEEEEEEE-T--TEEE
T ss_pred hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCC---CCCCCCEEEEEEEEEe-C--CeEE
Confidence 99999985 45789999999999999999764 78899999999999998873 4689999999999998 5 7887
Q ss_pred EeccCCCCCCCeEEEcCCCC---chHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCC-CCCCCCeEEEEEEEcccccCC
Q 008780 309 YDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPK 384 (554)
Q Consensus 309 ~~t~~~~~~~~~~f~lG~~~---v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~~~ 384 (554)
++ +++.|.+|+|. ++++|+.|+..|+.||++.+.++|.++|+..|... .||+++.+.|.++|.++....
T Consensus 182 -~~------~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~ 254 (457)
T 1kt0_A 182 -DC------RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK 254 (457)
T ss_dssp -EE------EEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred -ec------CceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence 43 25899999774 89999999999999999999999999999998653 689999999999999999999
Q ss_pred CCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHH
Q 008780 385 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464 (554)
Q Consensus 385 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~ 464 (554)
..+.+........+..++.+|+.+++.++|.+|+..|++|+.+........+++..........+|+|+|.||+++++|+
T Consensus 255 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 334 (457)
T 1kt0_A 255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334 (457)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 98999999999999999999999999999999999999999954332222345555667777899999999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 008780 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKG 543 (554)
Q Consensus 465 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~ 543 (554)
+|+.+|++||+++|+++++|+++|.+|..+++|++|+.+|++|++++|++ ..+...+..+..++. ..++++ .+|++
T Consensus 335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~--~~~~~ 411 (457)
T 1kt0_A 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDR--RIYAN 411 (457)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 99999999999999999999999999999999999999999999999998 678888888887777 555665 88999
Q ss_pred hccccc
Q 008780 544 CLTRSL 549 (554)
Q Consensus 544 ~f~~~~ 549 (554)
||.+..
T Consensus 412 ~f~k~~ 417 (457)
T 1kt0_A 412 MFKKFA 417 (457)
T ss_dssp C-----
T ss_pred HHhhhh
Confidence 998743
No 3
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=100.00 E-value=3.9e-43 Score=373.02 Aligned_cols=373 Identities=21% Similarity=0.323 Sum_probs=276.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEE
Q 008780 27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM 106 (554)
Q Consensus 27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~ 106 (554)
+++||+|+++++|+|..+|+.||.|.+||++++.||++|++|+. ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus 29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~----~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~ 104 (457)
T 1kt0_A 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104 (457)
T ss_dssp ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC----------CEEEETTSTTSCHHHHHHHTTCCTTCEEE
T ss_pred CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCC----CCCCeEEEeCCcchhhHHHHHHhhCCCCCEEE
Confidence 78999999999999997799999999999999889999999986 67899999999999999999999999999999
Q ss_pred EEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCC
Q 008780 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG 186 (554)
Q Consensus 107 ~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g 186 (554)
|+|||+++||..|.+ +.||++++++|+|+|++|... ++..+.++.++++.+|.|+..|..|+.|+|||++++ +|
T Consensus 105 ~~i~~~~~yg~~g~~----~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g 178 (457)
T 1kt0_A 105 LLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GG 178 (457)
T ss_dssp EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TT
T ss_pred EEEChHHhccccCCC----CCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CC
Confidence 999999999999875 789999999999999999865 455788999999999999999999999999999998 89
Q ss_pred cEEEecCCCccEEEEeCCC---CccchHHHHhccCCcCcEEEEEEeCCccCCCCCC--CCCCCcceEEEEEeeeeeeeee
Q 008780 187 KLILSHREGEPYFFTFGKS---EVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQVR 261 (554)
Q Consensus 187 ~~~~s~~~~~p~~~~~g~~---~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~--~~ip~~~~l~~~v~l~~~~~~~ 261 (554)
++|+++ ++.|.+|.| +++++|+.||..|++||.+.|.++|.++|+..+. ..||+++.+.|.+.+.++.+..
T Consensus 179 ~~f~~~----~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~ 254 (457)
T 1kt0_A 179 RMFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK 254 (457)
T ss_dssp EEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred eEEecC----ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence 999973 689999977 4899999999999999999999999999998654 3689999999999999986543
Q ss_pred cccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCC-CCchHHHHHHHhcC
Q 008780 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLM 340 (554)
Q Consensus 262 d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~-~~v~~g~~~~l~~M 340 (554)
+...-.. . .. |. .... ....|..+ |..|+ ...+..++.++...
T Consensus 255 ~~~~~~~------~----~~----~~---~a~~------~~~~G~~~-------------~~~g~~~~A~~~y~~Al~~~ 298 (457)
T 1kt0_A 255 ESWEMDT------K----EK----LE---QAAI------VKEKGTVY-------------FKGGKYMQAVIQYGKIVSWL 298 (457)
T ss_dssp CGGGSCH------H----HH----HH---HHHH------HHHHHHHH-------------HHTTCHHHHHHHHHHHHHHH
T ss_pred chhhcCH------H----HH----HH---HHHH------HHHHHHHH-------------HhCCCHHHHHHHHHHHHHHh
Confidence 3221000 0 00 00 0000 00001110 11221 12345555555432
Q ss_pred CcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHH
Q 008780 341 LPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAK 420 (554)
Q Consensus 341 ~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~ 420 (554)
|.. ..+ . .+ ...+.....+..+.++|..+++.++|++|+..
T Consensus 299 -----------p~~--------------~~~---------~--~~---~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 299 -----------EME--------------YGL---------S--EK---ESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp -----------TTC--------------CSC---------C--HH---HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------ccc--------------ccC---------C--hH---HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 110 000 0 00 00111223467888999999999999999999
Q ss_pred HHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q 008780 421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500 (554)
Q Consensus 421 Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A 500 (554)
|++||+ ++|.+ ..+|+++|.||+.+++|++|+.++++|++++|++..++..++.++..++++++|
T Consensus 340 ~~~al~----~~p~~-----------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 340 CDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh----cCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999 88887 789999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 008780 501 QRD 503 (554)
Q Consensus 501 ~~~ 503 (554)
.+.
T Consensus 405 ~~~ 407 (457)
T 1kt0_A 405 DRR 407 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 4
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=100.00 E-value=3.3e-41 Score=330.97 Aligned_cols=223 Identities=26% Similarity=0.444 Sum_probs=204.8
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEE
Q 008780 27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM 106 (554)
Q Consensus 27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~ 106 (554)
+++||+|+++++|+|..+|+.||.|.+||++++.||++|+++++ ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~ 124 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT----SSSCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEeccc----CCCCEEEEECCcChhHHHHHHHhcCCCCCEEE
Confidence 68999999999999997799999999999999989999999986 66899999999999999999999999999999
Q ss_pred EEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecccccc-CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCC
Q 008780 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA-DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD 185 (554)
Q Consensus 107 ~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~-~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~ 185 (554)
|+|||+++||..+.+ +.||++++++|+|+|+++...+... .+.++.++++++|.|...|+.||.|+|||++++ |
T Consensus 125 v~ipp~~aYG~~g~~----~~Ip~~~~lvf~Vel~~i~~~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-d 199 (280)
T 1q1c_A 125 ITCKPEYAYGSAGSP----PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-K 199 (280)
T ss_dssp EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECEECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-T
T ss_pred EEECcHHhCCCcCcc----CCCCCCCcEEEEEEeeeecccccccccccceeEEeeecccccccccCCceEEEEEEEEe-C
Confidence 999999999998875 7899999999999999998643222 678999999999999778999999999999987 9
Q ss_pred CcEEEecCCCccEEEEeCCCC---ccchHHHHhccCCcCcEEEEEEeCCccCCCCCC--CCCCCcceEEEEEeeeeeeee
Q 008780 186 GKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQV 260 (554)
Q Consensus 186 g~~~~s~~~~~p~~~~~g~~~---~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~--~~ip~~~~l~~~v~l~~~~~~ 260 (554)
|++|++ .|+.|.+|.++ ++|||+++|.+|++||+++|+|||+++||..+. ..||++++++|+|+|+++.+.
T Consensus 200 G~~fd~----~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~~ 275 (280)
T 1q1c_A 200 DKLFDQ----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 275 (280)
T ss_dssp TEEEEE----EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECC
T ss_pred CEEEec----CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeCC
Confidence 999997 48999999998 599999999999999999999999999998653 259999999999999999866
Q ss_pred ec
Q 008780 261 RD 262 (554)
Q Consensus 261 ~d 262 (554)
+|
T Consensus 276 ~~ 277 (280)
T 1q1c_A 276 KE 277 (280)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 5
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=100.00 E-value=1.5e-38 Score=324.78 Aligned_cols=226 Identities=27% Similarity=0.462 Sum_probs=208.6
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEE
Q 008780 26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS 105 (554)
Q Consensus 26 ~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~ 105 (554)
..+.++.++++++|.|..+|..||.|.+||++++.||++|+++. ++.|.+|.+++++||+.+|.+|++||++
T Consensus 124 ~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~~--------~~~f~~g~~~v~~gl~~~l~~m~~GE~~ 195 (356)
T 3jxv_A 124 AKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE--------GVEFTVKDGHLCPALAKAVKTMKKGEKV 195 (356)
T ss_dssp TSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEEE--------EEEEEGGGCSSSHHHHHHHTTCCBTCEE
T ss_pred ccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEeccC--------CEEEEeCCCCcchHHHHHHhhCCCCCEE
Confidence 35789999999999998779999999999999999999999764 6899999999999999999999999999
Q ss_pred EEEEeCCCccCCCCCCCCCC-CCCCCCCceEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeC
Q 008780 106 MFKMKPQMHYGEDDCPVAAP-STFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG 184 (554)
Q Consensus 106 ~~~ip~~~~yg~~~~~~~~~-~~ip~~~~l~~~v~l~~~~~~~~~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~ 184 (554)
.|+|||+++||..|.+...+ ..||++++|+|+|+|++|....++..+.++.++++++|.|++.|+.||.|+|||++++.
T Consensus 196 ~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~ 275 (356)
T 3jxv_A 196 LLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQ 275 (356)
T ss_dssp EEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEES
T ss_pred EEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEEC
Confidence 99999999999998863222 26999999999999999998888888899999999999999999999999999999999
Q ss_pred CCcEEEecC--CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCC---CCCCCCcceEEEEEeeeeeee
Q 008780 185 DGKLILSHR--EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL---MPVVEGCEEVHFEVELVHLIQ 259 (554)
Q Consensus 185 ~g~~~~s~~--~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~---~~~ip~~~~l~~~v~l~~~~~ 259 (554)
||++|+++. .++|+.|.+|.++++|||+++|.+|++||+++|+|||+++||+.+ ...||++++|+|+|+|+++.+
T Consensus 276 dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~ 355 (356)
T 3jxv_A 276 DGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355 (356)
T ss_dssp SSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred CCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence 999999873 478999999999999999999999999999999999999999864 356899999999999999863
No 6
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=100.00 E-value=2.5e-38 Score=310.49 Aligned_cols=223 Identities=30% Similarity=0.444 Sum_probs=201.8
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~ 229 (554)
.+.++.++++++|.|...|+.||.|+|||++++.||++|+++.. ++|++|.+|.++++|||+++|.+|++||+++|+||
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip 128 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 128 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence 57899999999999966699999999999999999999999864 68999999999999999999999999999999999
Q ss_pred CCccCCCC-CCCCCCCcceEEEEEeeeeeeeeeccc--CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCc
Q 008780 230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKK 306 (554)
Q Consensus 230 ~~~~~g~~-~~~~ip~~~~l~~~v~l~~~~~~~d~~--~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~ 306 (554)
|+++||.. .++.||++++|+|+|+|+++.. .|+. .|++++++++++|.|..+ |..|+.|+|||.|++ + |+
T Consensus 129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~---~~~gd~V~i~y~g~~-d--G~ 201 (280)
T 1q1c_A 129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAK---PNEGAIVEVALEGYY-K--DK 201 (280)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCC---CCTTCEEEEEEEEEE-T--TE
T ss_pred cHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeeccccccc---ccCCceEEEEEEEEe-C--CE
Confidence 99999984 4568999999999999999976 4777 899999999999999842 478999999999997 4 88
Q ss_pred EEEeccCCCCCCCeEEEcCCCC---chHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCC-CCCCCCeEEEEEEEccccc
Q 008780 307 VFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382 (554)
Q Consensus 307 ~~~~t~~~~~~~~~~f~lG~~~---v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~ 382 (554)
+|++ +|+.|.+|.+. +|+||+.+|.+|++||++.|+|||+|+||..+.+. .||++++++|+|+|+++..
T Consensus 202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~ 274 (280)
T 1q1c_A 202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274 (280)
T ss_dssp EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEEC
T ss_pred EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeC
Confidence 8743 37999999988 59999999999999999999999999999988665 5999999999999999999
Q ss_pred CCCCC
Q 008780 383 PKDWT 387 (554)
Q Consensus 383 ~~~~~ 387 (554)
+++.|
T Consensus 275 ~~~~W 279 (280)
T 1q1c_A 275 AKESW 279 (280)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 88766
No 7
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=100.00 E-value=9.9e-39 Score=325.76 Aligned_cols=273 Identities=30% Similarity=0.443 Sum_probs=207.0
Q ss_pred CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCC-CchHHHHHHHhcCCcC
Q 008780 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPG 343 (554)
Q Consensus 265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~-~v~~g~~~~l~~M~~G 343 (554)
.+++|.|+++++|.|..| ..|+.|+|||+|++.+ +|++|++|. . +++|+.|.+|.+ .+|+||+.+|.+|++|
T Consensus 47 ~~~~~~~~~~~~g~g~~~----~~gd~v~v~y~g~~~~-~g~~fd~~~-~-~~~~~~~~lg~~~~~i~g~e~~l~~m~~G 119 (338)
T 2if4_A 47 LDEKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKFEDTW-H-EQQPIELVLGKEKKELAGLAIGVASMKSG 119 (338)
T ss_dssp EETTEEEEEEECCBSCCC----CTTCEEEEEEEEEETT-TCCCCEEHH-H-HTCCEEEETTSCCGGGHHHHHHHHHCCBT
T ss_pred CCCCeEEEEEeCCCCCCC----CCCCEEEEEEEEEEcC-CCcEeeccc-C-CCCCeEEEcCCCCcccHHHHHHHhcCCCC
Confidence 356899999999999854 7899999999999875 488886554 2 468999999999 8999999999999999
Q ss_pred cEEEEEeCCCCccccCCC--CCCCCCCCeEEEEEEEcccccCC---CCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHH
Q 008780 344 EIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPK---DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAK 418 (554)
Q Consensus 344 E~~~~~i~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~ 418 (554)
|++.|+||+.++||..+. .+.||+++++.|+|+|.++.... +.+.++.++++..+..++.+|+.+++.++|.+|+
T Consensus 120 e~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~ 199 (338)
T 2if4_A 120 ERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAM 199 (338)
T ss_dssp CEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHH
T ss_pred CeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999987 36799999999999999998754 3678899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCh------hHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008780 419 AKYEKVLRDFNHVNPQDD------EEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM 492 (554)
Q Consensus 419 ~~Y~~al~~l~~~~p~~~------ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~ 492 (554)
..|++|+. +.|.+. ...+....+...+++|+|.||+++++|++|+.+|+++|+++|+++++|+++|.+|.
T Consensus 200 ~~y~~Al~----~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~ 275 (338)
T 2if4_A 200 QQYEMAIA----YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA 275 (338)
T ss_dssp HHHHHHHH----HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999 444321 11222334455699999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccc
Q 008780 493 ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 493 ~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~~~~~~ 551 (554)
.+|+|++|+.+|++|++++|++ ..++..|..+..+.+ ..++++ +.|++||...|..
T Consensus 276 ~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~--~~~~~~l~~~p~~ 332 (338)
T 2if4_A 276 ELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQK--EMYKGIFKGKDEG 332 (338)
T ss_dssp TTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCCCCC
Confidence 9999999999999999999998 678888888866655 556666 8999999987653
No 8
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=100.00 E-value=8.7e-35 Score=296.32 Aligned_cols=273 Identities=28% Similarity=0.460 Sum_probs=237.2
Q ss_pred eecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCC---chHHHHHH
Q 008780 260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMC 336 (554)
Q Consensus 260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~---v~~g~~~~ 336 (554)
..|++.|++|+|+|+++|.|.. .|..++.|+|||+|++ + |++|+++ |+.|.+|.|. ++++|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~~g~g~~---~p~~~~~v~v~y~g~~-~--g~~fd~~-------~~~f~lG~g~~~~~~~~~e~a 84 (336)
T 1p5q_A 18 GSHMEEDGGIIRRIQTRGEGYA---KPNEGAIVEVALEGYY-K--DKLFDQR-------ELRFEIGEGENLDLPYGLERA 84 (336)
T ss_dssp ----CCTTSEEEEEEECCCCSC---CCCTTCEEEEEEEEEE-T--TEEEEEE-------EEEEETTCGGGGTCCHHHHHH
T ss_pred ceeecCCCcEEEEEEeCCCCCC---CCCCCCeEEEEEEEEE-C--CEEEecC-------CeEEEeCCCCccccchHHHHH
Confidence 3678899999999999999973 3578999999999998 5 8888433 7999999887 58999999
Q ss_pred HhcCCcCcEEEEEeCCCCccccCCCCC-CCCCCCeEEEEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHH
Q 008780 337 VRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFE 415 (554)
Q Consensus 337 l~~M~~GE~~~~~i~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~ 415 (554)
+..|++||++.+.|+|+++||..|... .||+++.+.|+++|.++......+.+..+.....+..+..+|+.+++.|+|+
T Consensus 85 l~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~ 164 (336)
T 1p5q_A 85 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYK 164 (336)
T ss_dssp HTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999765 5999999999999999999988888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 008780 416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495 (554)
Q Consensus 416 ~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~ 495 (554)
+|+..|++|+.........+.+...........+++|+|.||+++++|++|+.+|+++|+++|+++++|+++|.+|..+|
T Consensus 165 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 244 (336)
T 1p5q_A 165 QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244 (336)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 99999999999432221112344555667778999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc
Q 008780 496 EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 496 ~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~~~ 548 (554)
++++|+.+|++|++++|++ ..+...+..+...+. ..++++ ++|++||.+.
T Consensus 245 ~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~ 295 (336)
T 1p5q_A 245 DFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREK--KLYANMFERL 295 (336)
T ss_dssp CHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 9999999999999999998 678888888887776 455555 7899998764
No 9
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.93 E-value=3.8e-25 Score=225.20 Aligned_cols=275 Identities=15% Similarity=0.154 Sum_probs=165.9
Q ss_pred CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCC-CcEEEecC-CCccEEEEeCCC-CccchHHHHhccCCcCcEEEEEE
Q 008780 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD-GKLILSHR-EGEPYFFTFGKS-EVPKGLEMGIGTMTREEKAVIYV 228 (554)
Q Consensus 152 d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~-g~~~~s~~-~~~p~~~~~g~~-~~~~gle~~l~~m~~Ge~~~~~v 228 (554)
+.++.++++++|.| ..|..||.|+|||++++.+ |++|+++. .++|+.|.+|.+ +++|||+++|.+|++||+++|+|
T Consensus 48 ~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i 126 (338)
T 2if4_A 48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHV 126 (338)
T ss_dssp ETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEE
T ss_pred CCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEEE
Confidence 45899999999999 6899999999999999885 99999875 478999999999 99999999999999999999999
Q ss_pred eCCccCCCCCC---CCCCCcceEEEEEeeeeeeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCC
Q 008780 229 TSQYLTPSPLM---PVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK 305 (554)
Q Consensus 229 ~~~~~~g~~~~---~~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g 305 (554)
||.++||..+. +.||++++++|+|+|+++....+ +... ......-.....-.+.. .|
T Consensus 127 ~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e----------------~~~~---~~~~~~~~~~~a~~~~~-~g 186 (338)
T 2if4_A 127 GWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE----------------GKAR---SDMTVEERIGAADRRKM-DG 186 (338)
T ss_dssp CGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCC----------------CBTT---TBCCHHHHHHHHHHHHH-HH
T ss_pred CHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcc----------------cccc---ccCCHHHHHHHHHHHHH-HH
Confidence 99999998653 78999999999999999854211 0000 00000000000000000 00
Q ss_pred cEEEeccCCCCCCCeEEEcCC-CCchHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCC
Q 008780 306 KVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384 (554)
Q Consensus 306 ~~~~~t~~~~~~~~~~f~lG~-~~v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~ 384 (554)
..+ |..|+ ...+..++.++....... .|...
T Consensus 187 ~~~-------------~~~g~~~~A~~~y~~Al~~~p~~~----------~~~~~------------------------- 218 (338)
T 2if4_A 187 NSL-------------FKEEKLEEAMQQYEMAIAYMGDDF----------MFQLY------------------------- 218 (338)
T ss_dssp HHT-------------CSSSCCHHHHHHHHHHHHHSCHHH----------HHTCC-------------------------
T ss_pred HHH-------------HhcCCHHHHHHHHHHHHHHhccch----------hhhhc-------------------------
Confidence 000 11111 113344444443221000 00000
Q ss_pred CCCCCChhhhhH--HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC
Q 008780 385 DWTGLSFDGIMD--EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE 462 (554)
Q Consensus 385 ~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~ 462 (554)
-...+... ....+.++|..+++.++|++|+..|++|++ ++|.+ ..+++++|.||..+++
T Consensus 219 ----~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~a~~~~g~ 279 (338)
T 2if4_A 219 ----GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEEKN-----------PKALFRRGKAKAELGQ 279 (338)
T ss_dssp ----HHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTC
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCC
Confidence 00011111 123678999999999999999999999999 78877 7899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 463 CRKSIEACNKVLDANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a-~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|++|+.+++++++++|++..++..++.+ ....+..+.|...|++++..+|++
T Consensus 280 ~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 280 MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHHHHHHHHTTC----------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 9999999999999999999999999998 445678889999999999999987
No 10
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.91 E-value=7.8e-24 Score=181.17 Aligned_cols=114 Identities=26% Similarity=0.492 Sum_probs=102.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCC---CCCCccEEEecCCCccchhHHhhcCCCCCCc
Q 008780 27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY---GGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103 (554)
Q Consensus 27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~---~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge 103 (554)
.|+|++|+++++|+|...|+.||.|.+||++++.||++|++|+... ...+.|+.|.+|.+++++||+++|.+|++|+
T Consensus 2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 81 (119)
T 3kz7_A 2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 81 (119)
T ss_dssp CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence 5899999999999998669999999999999999999999998410 0014799999999999999999999999999
Q ss_pred EEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 104 ~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
++.|+|||+++||..+.+ +..|||+++|+|+|+|+++
T Consensus 82 ~~~v~ip~~~aYG~~g~~---~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 82 KARLEIEPEWAYGKKGQP---DAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp EEEEEECGGGTTCTTCBG---GGTBCTTCCEEEEEEEEEE
T ss_pred EEEEEECcHHhcCCCCCC---CCccCcCCeEEEEEEEEEe
Confidence 999999999999999875 1379999999999999987
No 11
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.91 E-value=7.7e-24 Score=183.25 Aligned_cols=116 Identities=30% Similarity=0.497 Sum_probs=107.3
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
.-....++|++|+++++|+|...|+.||.|.+||++++.||++|++++. ++.|+.|.+|.+++++||+++|.+|++
T Consensus 12 di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~~i~G~e~~l~gm~~ 87 (128)
T 3o5q_A 12 DITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKK 87 (128)
T ss_dssp ECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCT
T ss_pred eecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHhcCCC
Confidence 3344578999999999999986699999999999999999999999986 678999999999999999999999999
Q ss_pred CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (554)
|+++.|+|||+++||..+.+ +.|||+++|+|+|+|++++.
T Consensus 88 Ge~~~v~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~i~~ 127 (128)
T 3o5q_A 88 GEICHLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKG 127 (128)
T ss_dssp TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred CCEEEEEEChHHcCCCCCCC----CCcCCCCEEEEEEEEEEecC
Confidence 99999999999999999875 68999999999999999863
No 12
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.91 E-value=1.1e-23 Score=178.50 Aligned_cols=112 Identities=25% Similarity=0.513 Sum_probs=104.6
Q ss_pred ccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcE
Q 008780 25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV 104 (554)
Q Consensus 25 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~ 104 (554)
..+++|++|+++++|+|...|+.||.|.+||++++.||++|++++. .+.|+.|.+|.+++++||+++|.+|++|++
T Consensus 2 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~ 77 (113)
T 1yat_A 2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIGVGQVIKGWDVGIPKLSVGEK 77 (113)
T ss_dssp EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT----TTCCEEEETTSSSSCHHHHHHGGGCCTTCE
T ss_pred CCCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCC----CCCcEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence 4578999999999999987789999999999999989999999986 567999999999999999999999999999
Q ss_pred EEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780 105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (554)
Q Consensus 105 ~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (554)
+.|.|||+++||..+.+ +.||++++++|+|+|++++
T Consensus 78 ~~v~ip~~~ayG~~~~~----~~Ip~~~~l~f~vel~~ik 113 (113)
T 1yat_A 78 ARLTIPGPYAYGPRGFP----GLIPPNSTLVFDVELLKVN 113 (113)
T ss_dssp EEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred EEEEECHHHCcCCCCCC----CCcCCCCeEEEEEEEEEeC
Confidence 99999999999998875 6799999999999999873
No 13
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=99.91 E-value=9.8e-24 Score=186.13 Aligned_cols=112 Identities=31% Similarity=0.524 Sum_probs=105.7
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEE
Q 008780 26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS 105 (554)
Q Consensus 26 ~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~ 105 (554)
..++|++|+++++|+|..+|+.||.|.+||++++.||++|++++. ++.|+.|.+|.+++++||+.+|.+|++|+++
T Consensus 32 ~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~ 107 (144)
T 3o5e_A 32 KKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKKGEIC 107 (144)
T ss_dssp SCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGG----GTSCEEEETTSSSSCHHHHHHHTTCCBTCEE
T ss_pred cCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecc----cCCCeEEEeCCCcccHHHHHHHhCCCCCCEE
Confidence 369999999999999986699999999999999999999999987 6789999999999999999999999999999
Q ss_pred EEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780 106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145 (554)
Q Consensus 106 ~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (554)
.|+|||+++||..+.+ +.|||+++|+|+|+|++|+.
T Consensus 108 ~v~ipp~~aYG~~g~~----~~Ipp~~~L~f~VeL~~ikg 143 (144)
T 3o5e_A 108 HLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKG 143 (144)
T ss_dssp EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred EEEEChHHCcCCCCCC----CCcCCCCeEEEEEEEEEecC
Confidence 9999999999999875 78999999999999999863
No 14
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.90 E-value=1.4e-23 Score=183.05 Aligned_cols=114 Identities=28% Similarity=0.553 Sum_probs=105.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEE
Q 008780 27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM 106 (554)
Q Consensus 27 ~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~ 106 (554)
+++|++|+++++|+|...|+.||.|.+||++++.||++|++++. ++.|+.|.+|.+++++||+++|.+|++|+++.
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~ 87 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAE 87 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEE
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCc----CCCCEEEEeCCCCccHHHHHHHhcCCCCCEEE
Confidence 78999999999999985599999999999999889999999986 56799999999999999999999999999999
Q ss_pred EEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecccc
Q 008780 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKI 148 (554)
Q Consensus 107 ~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~ 148 (554)
|+|||+++||..+.+ +.||++++++|+|+|.++...+.
T Consensus 88 v~ip~~~aYG~~g~~----~~Ip~~~~l~f~v~l~~i~~~~l 125 (135)
T 1r9h_A 88 FTIRSDYGYGDAGSP----PKIPGGATLIFEVELFEWSAEDI 125 (135)
T ss_dssp EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC---
T ss_pred EEEChHHcCCCCCCC----CCcCcCCcEEEEEEEEEeecCCc
Confidence 999999999999875 78999999999999999986543
No 15
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.90 E-value=3.2e-23 Score=180.00 Aligned_cols=113 Identities=27% Similarity=0.453 Sum_probs=105.1
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
....++++|++|+++++|+|.. |+.||.|.++|++++.||++|+++++ .+.|+.|.+|.+++++||+++|.+|++
T Consensus 21 ~~~~~~~~gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~eeaL~gmk~ 95 (133)
T 2y78_A 21 MTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKV 95 (133)
T ss_dssp TCCEECTTSCEEEEEECCSSCB-CCTTSEEEEEEEEEETTSCEEEETTT----TTCCEEEETTSSSSCHHHHHHSTTCBT
T ss_pred CCcEECCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEeccCc----CCCCEEEEeCCCChhHHHHHHHcCCCC
Confidence 3456789999999999999987 89999999999999989999999986 568999999999999999999999999
Q ss_pred CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
|+++.|.|||+++||..+.+ +.|||+++++|+|+|++|
T Consensus 96 Ge~~~v~ip~~~aYG~~~~~----~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 96 GGVRRLTIPPQLGYGARGAG----GVIPPNATLVFEVELLDV 133 (133)
T ss_dssp TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred CCEEEEEECcHHhCCCCCCC----CCCCCCCeEEEEEEEEEC
Confidence 99999999999999999875 679999999999999875
No 16
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.90 E-value=3.9e-23 Score=173.36 Aligned_cols=107 Identities=26% Similarity=0.553 Sum_probs=100.4
Q ss_pred CeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEE
Q 008780 30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109 (554)
Q Consensus 30 g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~i 109 (554)
||+|+++++|+|...|+.||.|.+||++++.||++|++++. .+.|+.|.+|.+++++||+++|.+|++|+++.|.|
T Consensus 1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~i 76 (107)
T 2ppn_A 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76 (107)
T ss_dssp CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEE
Confidence 78999999999987799999999999999889999999986 55799999999999999999999999999999999
Q ss_pred eCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (554)
Q Consensus 110 p~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (554)
||+++||..+.+ +.||++++++|+|+|+++.
T Consensus 77 p~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v~ 107 (107)
T 2ppn_A 77 SPDYAYGATGHP----GIIPPHATLVFDVELLKLE 107 (107)
T ss_dssp CGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred CHHHccCCCCCC----CCcCCCCeEEEEEEEEEeC
Confidence 999999998875 6799999999999999873
No 17
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.89 E-value=4.3e-23 Score=178.60 Aligned_cols=114 Identities=32% Similarity=0.549 Sum_probs=105.4
Q ss_pred cccccCCCCeEEE--EEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCC
Q 008780 22 RRMKIVPGSLMKA--VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (554)
Q Consensus 22 ~~~~~~~~g~~~~--~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m 99 (554)
.....+++|++|+ ++++|+|...|+.||.|.++|++++.||++|++++. .+.|+.|.+|.+++++||+++|.+|
T Consensus 15 ~~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm 90 (130)
T 2lgo_A 15 QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRS----RGKPFQFTLGAGEVIKGWDQGVATM 90 (130)
T ss_dssp SSCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTT----TTCCEEEETTSTTSCHHHHHHHHHS
T ss_pred ccceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCc----CCCCEEEEeCCCCccHHHHHHHhCC
Confidence 3455679999999 999999997789999999999999889999999986 5679999999999999999999999
Q ss_pred CCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 100 ~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
++|+++.|.|||+++||..+.+ +.|||+++++|+|+|+++
T Consensus 91 ~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 91 TLGEKALFTIPYQLAYGERGYP----PVIPPKATLVFEVELLAV 130 (130)
T ss_dssp CTTEEEEEEECTTTSTTTTCCS----TTSCSSCCEEEEEEEEEC
T ss_pred CCCCEEEEEECcHHHCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence 9999999999999999998875 679999999999999875
No 18
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.89 E-value=4.7e-23 Score=185.21 Aligned_cols=115 Identities=23% Similarity=0.398 Sum_probs=106.3
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
....++++||+|+++++|+|...|+.||.|.+||++++.||++|++++. ++.|+.|.+ +++++||+++|.+|++
T Consensus 30 ~~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~ 103 (167)
T 1jvw_A 30 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPTTFRP--NEVIKGWTEALQLMRE 103 (167)
T ss_dssp TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH----HTSCEEECG--GGSCHHHHHHHTTCCT
T ss_pred CCcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEe--CchhHHHHHHHcCCCC
Confidence 4567899999999999999987689999999999999989999999986 567999999 5899999999999999
Q ss_pred CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeecc
Q 008780 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~ 146 (554)
|++++|+|||+++||..+.+ +.||||++|+|+|+|+++.+.
T Consensus 104 Ge~~~~~Ip~~laYG~~g~~----~~Ipp~s~LiF~VeL~~i~~~ 144 (167)
T 1jvw_A 104 GDRWRLFIPYDLAYGVTGGG----GMIPPYSPLEFDVELISIKDG 144 (167)
T ss_dssp TCEEEEEECGGGTTTTTCSS----SSSCTTCCEEEEEEEEEEGGG
T ss_pred CCEEEEEECchhhCCCCCCC----CCcCCCCeEEEEEEEEEEEcC
Confidence 99999999999999999875 689999999999999999754
No 19
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=175.01 Aligned_cols=116 Identities=23% Similarity=0.357 Sum_probs=104.5
Q ss_pred cccccCCCCeEEEEEecCC--CCCCCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCC
Q 008780 22 RRMKIVPGSLMKAVMRPGG--GDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98 (554)
Q Consensus 22 ~~~~~~~~g~~~~~~~~G~--g~~~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~ 98 (554)
...+++++|++|+++++|+ |.. |+.||.|.+||++++. ||++|++|+.. +.+.|+.|.+|.+++++||+++|.+
T Consensus 5 ~~~~~~~~gl~~~~l~~g~~~g~~-~~~gd~V~v~Y~g~~~~dG~~fdss~~~--~~~~p~~f~lG~~~~i~G~e~~l~g 81 (125)
T 4dip_A 5 MGALIPEPEVKIEVLQKPFICHRK-TKGGDLMLVHYEGYLEKDGSLFHSTHKH--NNGQPIWFTLGILEALKGWDQGLKG 81 (125)
T ss_dssp CGGGCCCCCCEEEEEECCSCCSCC-CCTTCEEEEEEEEEETTTCCEEEEHHHH--TTTCCEEEETTSCSSCHHHHHHSTT
T ss_pred CceEECCCCeEEEEEEcCCCCCCc-CCCCCEEEEEEEEEECCCCcEEEEcccC--CCCcCEEEEeCCCChhHHHHHHHhC
Confidence 4566789999999999998 444 8999999999999998 99999999841 0357999999999999999999999
Q ss_pred CCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780 99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145 (554)
Q Consensus 99 m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (554)
|++|+++.|.|||+++||..+. +.|||+++|+|+|+|+++.+
T Consensus 82 m~~Ge~~~~~ip~~~aYG~~g~-----~~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 82 MCVGEKRKLIIPPALGYGKEGK-----GKIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp CCTTCEEEEEECGGGTTTTTCB-----TTBCTTCCEEEEEEEEEEEC
T ss_pred CCCCCEEEEEEChHHhcCCCCC-----CCCCCCCeEEEEEEEEEEEc
Confidence 9999999999999999999985 47999999999999999864
No 20
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=99.89 E-value=1.4e-22 Score=185.25 Aligned_cols=122 Identities=26% Similarity=0.403 Sum_probs=109.6
Q ss_pred ccccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEEEecCCC-ccchhHHhhc
Q 008780 19 DDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKS-KILLGLLEGI 96 (554)
Q Consensus 19 ~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~g~~-~~~~g~~~~l 96 (554)
+.....+++++|++|+++++|+|.. |+.||.|.+||++++. +|++|++|+. .+.|+.|.+|.+ ++++||+.+|
T Consensus 39 ~~~~~~~~~~~gl~~~vl~~G~G~~-~~~Gd~V~v~Y~g~l~~dG~~fdss~~----~~~p~~f~lG~g~~vi~G~eeaL 113 (180)
T 2f4e_A 39 KVDSEAEVLDEKVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWH----EQQPIELVLGKEKKELAGLAIGV 113 (180)
T ss_dssp CCCSCCEEEETTEEEEEEECCBSCC-BCTTCEEEEEEEEEETTTCCEEEETTT----TTCCEEEETTSCCGGGHHHHHHH
T ss_pred ccCCCcEECCCceEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCcEEeccCc----cCCCEEEEeCCCCchhHHHHHHH
Confidence 3445577889999999999999986 9999999999999987 5999999986 678999999999 9999999999
Q ss_pred CCCCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeeccc
Q 008780 97 PTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147 (554)
Q Consensus 97 ~~m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~ 147 (554)
.+|++|+++.|+|||+++||..+.+. ++.||++++|+|+|+|+++..+.
T Consensus 114 ~gMk~Ge~~~v~iPp~~aYG~~g~~~--~~~Ip~~s~l~F~VeL~~v~~~~ 162 (180)
T 2f4e_A 114 ASMKSGERALVHVGWELAYGKEGNFS--FPNVPPMADLLYEVEVIGFDETK 162 (180)
T ss_dssp TTCCBTCEEEEEECGGGTTTTTCBSS--SSCBCTTCCEEEEEEEEEESCBC
T ss_pred hCCCCCCEEEEEECchHhCCcCCccc--CCCcCCCCeEEEEEEEEEEecCc
Confidence 99999999999999999999988621 25799999999999999997654
No 21
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=181.15 Aligned_cols=115 Identities=27% Similarity=0.404 Sum_probs=99.2
Q ss_pred ccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCC
Q 008780 21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (554)
Q Consensus 21 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m 99 (554)
+....++++||+|+++++|+|.. ++.||.|.+||++++. +|++|++++. .+.|+.|.+|.+++++||+++|.+|
T Consensus 18 ~~~~v~~~~gl~~~vl~~G~g~~-~~~gd~V~v~Y~g~l~~~G~~fdss~~----~~~p~~f~lG~g~~i~G~e~aL~gm 92 (134)
T 3b7x_A 18 RMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMDRPFDSNYF----RKTPRLMKLGEDITLWGMELGLLSM 92 (134)
T ss_dssp TCEESSSSSSEEEEEEECCEEEE-CCTTCEEEEEEEEECTTCSSCSEEC-----------CEEC-CCCCCHHHHHHHHTC
T ss_pred ccceeeCCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCeEEEecCC----CCCCEEEEcCCcchhHHHHHHHhCC
Confidence 34455689999999999999997 7899999999999987 6999999986 5689999999999999999999999
Q ss_pred CCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (554)
Q Consensus 100 ~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (554)
++|+++.|+|||+++||..+.+ +.|||+++++|+|+|+++.
T Consensus 93 ~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 93 RRGELARFLFKPNYAYGTLGCP----PLIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp EETCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred CCCCEEEEEECHHHCcCCCCCC----CCcCcCCeEEEEEEEEEEe
Confidence 9999999999999999999875 6799999999999999985
No 22
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.89 E-value=1.2e-21 Score=199.10 Aligned_cols=267 Identities=15% Similarity=0.185 Sum_probs=199.9
Q ss_pred ccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCC---ccchHHHHhccCCcCcEEE
Q 008780 149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAV 225 (554)
Q Consensus 149 ~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~---~~~gle~~l~~m~~Ge~~~ 225 (554)
+..+.++.++++++|.|...|..|+.|+|||++++ +|++|+++ |+.|.+|.|. ++++|+++|.+|++||++.
T Consensus 21 ~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~ 95 (336)
T 1p5q_A 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI 95 (336)
T ss_dssp -CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred ecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC----CeEEEeCCCCccccchHHHHHHhcCCCCCeEE
Confidence 34678999999999999778999999999999998 99999986 8999999987 5899999999999999999
Q ss_pred EEEeCCccCCCCCCC--CCCCcceEEEEEeeeeeeeeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecC
Q 008780 226 IYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNE 303 (554)
Q Consensus 226 ~~v~~~~~~g~~~~~--~ip~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~ 303 (554)
+.++|+++||..+.+ .||+++.+.|+++|.++....+...... . ..| . ....++ +
T Consensus 96 l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~------~----~~p----~---~a~~~~-----~- 152 (336)
T 1p5q_A 96 VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNS------E----EKL----E---QSTIVK-----E- 152 (336)
T ss_dssp EEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCH------H----HHH----H---HHHHHH-----H-
T ss_pred EEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCH------H----HHH----H---HHHHHH-----H-
Confidence 999999999986554 5899999999999999964433221000 0 000 0 000000 0
Q ss_pred CCcEEEeccCCCCCCCeEEEcCC-CCchHHHHHHHhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEccccc
Q 008780 304 EKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382 (554)
Q Consensus 304 ~g~~~~~t~~~~~~~~~~f~lG~-~~v~~g~~~~l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~ 382 (554)
-|... +..|+ ...+..++.++.... .. ..+ .
T Consensus 153 ~g~~~-------------~~~g~~~~A~~~y~~Al~~~p-----------~~--------------~~~---------~- 184 (336)
T 1p5q_A 153 RGTVY-------------FKEGKYKQALLQYKKIVSWLE-----------YE--------------SSF---------S- 184 (336)
T ss_dssp HHHHH-------------HHHTCHHHHHHHHHHHHHHTT-----------TC--------------CCC---------C-
T ss_pred HHHHH-------------HHCCCHHHHHHHHHHHHHHhh-----------cc--------------ccC---------C-
Confidence 01100 11222 123455555554321 10 000 0
Q ss_pred CCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC
Q 008780 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE 462 (554)
Q Consensus 383 ~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~ 462 (554)
. ..........+..+.++|..+++.|+|++|+..|++|++ ++|.+ ..+++++|.||..+++
T Consensus 185 -~---~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~ 245 (336)
T 1p5q_A 185 -N---EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVND 245 (336)
T ss_dssp -S---HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTC
T ss_pred -h---HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHCCC
Confidence 0 000111223467889999999999999999999999999 78887 7899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 008780 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEMMMKV 510 (554)
Q Consensus 463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A-~~~~~~al~l 510 (554)
|++|+.+++++++++|++..+++.++.++..++++++| ...|++++..
T Consensus 246 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 4567776654
No 23
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.88 E-value=2.8e-22 Score=173.82 Aligned_cols=117 Identities=21% Similarity=0.518 Sum_probs=102.7
Q ss_pred ccccccCCCCeE-EEEEecC-CCC-CCCCCCCEEEEEEEEEe-cCCcEEEecccCCCCCCccEEEecCCCccchhHHhhc
Q 008780 21 KRRMKIVPGSLM-KAVMRPG-GGD-STPSDGDQVAYHCTVRT-LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGI 96 (554)
Q Consensus 21 ~~~~~~~~~g~~-~~~~~~G-~g~-~~~~~gd~V~~~y~~~~-~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l 96 (554)
+....++++|+. ++++++| .|. ..|+.||.|.+||++++ .||++|++++. .+.|+.|.+|.+++++||+++|
T Consensus 7 ~~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~----~~~p~~f~lG~g~~i~g~e~~l 82 (129)
T 2vn1_A 7 FEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD----RNVPFKFHLEQGEVIKGWDICV 82 (129)
T ss_dssp CEEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG----TTCCEEEETTSSSSCHHHHHHH
T ss_pred cCCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC----CCccEEEEeCCCCcCHHHHHHH
Confidence 345566677655 4799977 552 34899999999999998 79999999986 5689999999999999999999
Q ss_pred CCCCCCcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780 97 PTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145 (554)
Q Consensus 97 ~~m~~Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (554)
.+|++|+++.|+|||+++||..+.+ +.|||+++++|+|+|+++..
T Consensus 83 ~gm~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 83 SSMRKNEKCLVRIESMYGYGDEGCG----ESIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp TTCCTTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred hCCCCCCEEEEEEChHHcCCCCCCC----CCcCCCCeEEEEEEEEEEec
Confidence 9999999999999999999998875 67999999999999999975
No 24
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=176.39 Aligned_cols=115 Identities=22% Similarity=0.352 Sum_probs=102.7
Q ss_pred ccccccCCCCe-EEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCC
Q 008780 21 KRRMKIVPGSL-MKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98 (554)
Q Consensus 21 ~~~~~~~~~g~-~~~~~~~G~g~-~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~ 98 (554)
++...++++|+ +|+++++|+|. ..|+.||.|.+||++++.||++|+++ .|+.|.+|.+++++||+++|.+
T Consensus 34 ~~~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~--------~p~~f~lG~g~vi~G~eeaL~g 105 (157)
T 2jwx_A 34 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPL 105 (157)
T ss_dssp CSCEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE--------EEEEEETTTTSSCHHHHHHTTT
T ss_pred cccceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC--------CCEEEEeCCCChhHHHHHHHcC
Confidence 33445678887 89999999997 34899999999999999999999963 4899999999999999999999
Q ss_pred CCCCcEEEEEEeCCCccCCCC-CCCCCCCCCCCCCceEEEEEEEeeeccc
Q 008780 99 MLKGEVSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAK 147 (554)
Q Consensus 99 m~~Ge~~~~~ip~~~~yg~~~-~~~~~~~~ip~~~~l~~~v~l~~~~~~~ 147 (554)
|++|++++|+||++++||..+ .+ +.|||+++|+|+|+|+++....
T Consensus 106 Mk~Ge~~~v~IP~~~aYG~~g~~~----~~IPp~stLiF~VeL~~i~~~~ 151 (157)
T 2jwx_A 106 MDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDLE 151 (157)
T ss_dssp SCTTCEEEEEECGGGTTTTTCCSS----SCCCTTCCEEEEEEEEEEEECS
T ss_pred CCCCCEEEEEECchhcCCcccccC----CCcCCCCeEEEEEEEEEEEccc
Confidence 999999999999999999988 43 6799999999999999997643
No 25
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.88 E-value=8.5e-23 Score=176.91 Aligned_cols=119 Identities=22% Similarity=0.405 Sum_probs=105.3
Q ss_pred cccccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCC-
Q 008780 20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT- 98 (554)
Q Consensus 20 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~- 98 (554)
......++++||+|+++++|+|.. |+.||.|.+||++++.||++|++++. ++.|+.|.+|.+++++||+++|.+
T Consensus 3 ~~~~~~~~~~Gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~~i~G~~~~L~G~ 77 (129)
T 1u79_A 3 TSCEFSVSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYN----RGKPLTFRIGVGEVIKGWDQGILGS 77 (129)
T ss_dssp --CCCEECTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHHCB
T ss_pred CCCccEECCCCeEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCCccHHHHHHhccc
Confidence 345667789999999999999987 89999999999999889999999986 567999999999999999999998
Q ss_pred -----CCCCcEEEEEEeCCCccCCCCCCCC-CCCCCCCCCceEEEEEEEee
Q 008780 99 -----MLKGEVSMFKMKPQMHYGEDDCPVA-APSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 99 -----m~~Ge~~~~~ip~~~~yg~~~~~~~-~~~~ip~~~~l~~~v~l~~~ 143 (554)
|++|++++|.|||+++||+.+.+.. .++.||||++++|+|+|+++
T Consensus 78 ~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 78 DGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp TTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred ccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 9999999999999999999875210 01469999999999999987
No 26
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=99.88 E-value=2.1e-22 Score=187.58 Aligned_cols=109 Identities=21% Similarity=0.353 Sum_probs=101.3
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
...+++++|++|+++++|+|.. |+.||.|.+||++++.||++|++| . .|+.|.+| ++|+||+++|.+|++
T Consensus 110 ~gv~~~~sGl~y~vl~~G~G~~-p~~gd~V~V~Y~g~l~dG~vfDss-~------~P~~f~lG--~vI~G~eeaL~gMk~ 179 (219)
T 3oe2_A 110 PGVKELADGILMTELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS-T------QPQWFRLD--SVISGWTSALQNMPT 179 (219)
T ss_dssp TTCEECGGGCEEEEEECCCSCC-CCTTSEEEEEEEEECTTSCEEEEC-S------SCEEEEGG--GSCHHHHHHHTTCCT
T ss_pred CCcEECCCCeEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEeecc-C------CcEEEEec--chhHHHHHHHhCCCC
Confidence 3466789999999999999987 999999999999999999999988 3 59999996 899999999999999
Q ss_pred CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (554)
|++++|+|||+++||..+.+ +.|||+++|+|+|+|++|+
T Consensus 180 Gek~~v~IPp~lAYG~~g~~----~~IPpnstLvFeVeLl~Ik 218 (219)
T 3oe2_A 180 GAKWRLVIPSDQAYGAEGAG----DLIDPFTPLVFEIELIAVS 218 (219)
T ss_dssp TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred CCEEEEEECchhcCCCCCCC----CCCCCCCeEEEEEEEEEEe
Confidence 99999999999999999875 6799999999999999985
No 27
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=99.88 E-value=6.7e-23 Score=182.40 Aligned_cols=119 Identities=20% Similarity=0.314 Sum_probs=99.3
Q ss_pred ccCCCCeEEEEEecCCCCC-CCCCCCEEEEEEEEEecC--CcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 25 KIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 25 ~~~~~g~~~~~~~~G~g~~-~~~~gd~V~~~y~~~~~~--g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
+++.+||+|+++++|+|.. .+..||.|.+||++++.| |++||||++ ++.|+.|.+|.+++|+||+.||.+|++
T Consensus 6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~----rg~P~~f~lG~g~vI~Gwd~gl~~M~~ 81 (165)
T 2lkn_A 6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA----RGKPMELIIGKKFKLPVWETIVCTMRE 81 (165)
T ss_dssp HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT----TTCCEEEESSSSCSCSHHHHHHTTCCT
T ss_pred cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc----CCCCEEEEecCCCccHHHHHHHhcCcc
Confidence 5679999999999999985 246899999999999854 999999998 889999999999999999999999999
Q ss_pred CcEEEEEEeCCCccCCC-----------CCCCCC-------------------C---CCCCCCCceEEEEEEEeeeccc
Q 008780 102 GEVSMFKMKPQMHYGED-----------DCPVAA-------------------P---STFPKDEELHFEIEMIDFAKAK 147 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~-----------~~~~~~-------------------~---~~ip~~~~l~~~v~l~~~~~~~ 147 (554)
||+++|+|||+++||.. +..+.. . .-|+++++|+|+|||++|..+.
T Consensus 82 Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~ 160 (165)
T 2lkn_A 82 GEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPG 160 (165)
T ss_dssp TCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTT
T ss_pred CceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCc
Confidence 99999999999999920 100000 0 0134457899999999998765
No 28
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=99.88 E-value=3e-22 Score=186.94 Aligned_cols=113 Identities=26% Similarity=0.439 Sum_probs=104.7
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
....++++|++|+++++|+|.. |+.||.|.+||++++.||++|++++. ++.|+.|.+ +++++||+++|.+|++
T Consensus 99 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~ 171 (213)
T 1fd9_A 99 PGVVVLPSGLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQV--SQVIPGWTEALQLMPA 171 (213)
T ss_dssp TTEEECTTSCEEEEEECCCSCC-CCTTCEEEEEEEEEETTSCEEEEHHH----HCSCEEEEG--GGSCHHHHHHHTTCCT
T ss_pred CCcEECCCccEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEc--CchhhHHHHHHcCCCC
Confidence 3467789999999999999987 99999999999999999999999986 568999999 5899999999999999
Q ss_pred CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeeec
Q 008780 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (554)
|++++|+|||+++||..+.+ +.|||+++++|+|+|+++.+
T Consensus 172 Gek~~v~IP~~laYG~~g~~----~~Ipp~stLiF~VeLl~v~~ 211 (213)
T 1fd9_A 172 GSTWEIYVPSGLAYGPRSVG----GPIGPNETLIFKIHLISVKK 211 (213)
T ss_dssp TCEEEEEECGGGTTTTCCCS----SSCCTTCCEEEEEEEEEEEC
T ss_pred CCEEEEEECchhccCccCCC----CCCCCCCeEEEEEEEEEEEc
Confidence 99999999999999999864 67999999999999999964
No 29
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.88 E-value=4.3e-22 Score=186.27 Aligned_cols=111 Identities=27% Similarity=0.472 Sum_probs=104.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCc
Q 008780 24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103 (554)
Q Consensus 24 ~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge 103 (554)
..++++|++|+++++|+|.. |+.||.|.+||++++.||++|++++. .+.|+.|.+|.+++++||+++|.+|++|+
T Consensus 99 ~~~~~sGl~~~vl~~G~G~~-~~~gd~V~v~Y~g~l~dG~~fdss~~----~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge 173 (209)
T 3uf8_A 99 VVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGG 173 (209)
T ss_dssp CEECTTSCEEEEEECCCSCB-CCTTCEEEEEEEEEETTSCEEEESGG----GTCCEEEETTSSSSCHHHHHHHTTCBTTC
T ss_pred ccCCCCceEEEEEEcCCCCc-CCCCCEEEEEEEEEECCCCEEEEccc----cCCCEEEEeCCCccchhHHHHHhCCCCCC
Confidence 45679999999999999998 99999999999999999999999987 67899999999999999999999999999
Q ss_pred EEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 104 ~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
++.|+|||++|||..+.+ +.|||+++|+|+|+|++|
T Consensus 174 ~~~v~Ipp~~aYG~~g~~----~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 174 VRRLTIPPQLGYGARGAA----GVIPPNATLVFEVELLDV 209 (209)
T ss_dssp EEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred EEEEEECcHHhCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence 999999999999999875 679999999999999975
No 30
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.88 E-value=7.3e-22 Score=168.38 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=99.8
Q ss_pred cccCCCC-eEEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 24 MKIVPGS-LMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 24 ~~~~~~g-~~~~~~~~G~g~-~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
..++++| ++|+++++|+|. ..|+.||.|.+||++++.||++|+++ .|+.|.+|.+++++||+++|.+|++
T Consensus 7 ~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~--------~p~~f~lG~~~~i~g~e~~l~gm~~ 78 (118)
T 2awg_A 7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPLMDV 78 (118)
T ss_dssp EESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE--------EEEEEETTSSCSCHHHHHHGGGSCT
T ss_pred eEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC--------CCEEEEECCCChhHHHHHHHhCCCC
Confidence 4556777 999999999997 35899999999999998899999963 4899999999999999999999999
Q ss_pred CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (554)
|+++.|.|||+++||..+.+ +.|||+++++|+|+|+++.
T Consensus 79 Ge~~~~~ip~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 79 GETAMVTADSKYCYGPQGRS----PYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred CCEEEEEEChHHccCCCCCC----CccCCCCeEEEEEEEEEec
Confidence 99999999999999998875 6799999999999999985
No 31
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=180.90 Aligned_cols=120 Identities=24% Similarity=0.377 Sum_probs=99.1
Q ss_pred cCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcC
Q 008780 264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343 (554)
Q Consensus 264 ~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~G 343 (554)
+.+.+|+|+++++|.|..|. +..|++|+|||+|++.|++|++| ||+++ +++|++|.+|.+++|+||+.+|.+|++|
T Consensus 7 ~~~~Gv~~~vl~~G~G~~p~--~~~G~~V~vhY~g~l~d~~G~~F-DsS~~-rg~P~~f~lG~g~vI~Gwd~gl~~M~~G 82 (165)
T 2lkn_A 7 LREDGIQKRVIQEGRGELPD--FQDGTKATFHYRTLHSDDEGTVL-DDSRA-RGKPMELIIGKKFKLPVWETIVCTMREG 82 (165)
T ss_dssp HHTTSCCCCEEECCSSCCCC--CCTTCEEEEECEEECSSSSCCEE-EESTT-TTCCEEEESSSSCSCSHHHHHHTTCCTT
T ss_pred ccCCCeEEEEEECCcCCCCC--CCCCCEEEEEEEEEEeCCCccEE-Eeccc-CCCCEEEEecCCCccHHHHHHHhcCccC
Confidence 46788999999999998651 24799999999999987779998 55555 6899999999999999999999999999
Q ss_pred cEEEEEeCCCCcccc--------CCCCCC-----------------------------CCCCCeEEEEEEEcccccCCCC
Q 008780 344 EIALVTCPPDYAYDK--------FLRPAN-----------------------------VPEGAHIQWEIELLGFEKPKDW 386 (554)
Q Consensus 344 E~~~~~i~~~~~yg~--------~g~~~~-----------------------------ip~~~~l~~~ieL~~~~~~~~~ 386 (554)
|++.|+|||++|||. ...... ++++++|+|+|||++++.|.++
T Consensus 83 e~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~ey 162 (165)
T 2lkn_A 83 EIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTY 162 (165)
T ss_dssp CEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTC
T ss_pred ceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCccc
Confidence 999999999999982 000111 2233679999999999998765
Q ss_pred C
Q 008780 387 T 387 (554)
Q Consensus 387 ~ 387 (554)
.
T Consensus 163 e 163 (165)
T 2lkn_A 163 Q 163 (165)
T ss_dssp C
T ss_pred c
Confidence 3
No 32
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.87 E-value=8.1e-22 Score=171.96 Aligned_cols=120 Identities=32% Similarity=0.495 Sum_probs=101.6
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~ 229 (554)
.+.++.++++++|.|...|+.||.|+|||++++.||++|+++.. ++|++|.+|.++++|||+++|.+|++||+++|+||
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip 91 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR 91 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 67899999999999966799999999999999999999999863 68999999999999999999999999999999999
Q ss_pred CCccCCCC-CCCCCCCcceEEEEEeeeeeeeeeccc--CCccEEE
Q 008780 230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIK 271 (554)
Q Consensus 230 ~~~~~g~~-~~~~ip~~~~l~~~v~l~~~~~~~d~~--~dg~l~k 271 (554)
|+++||+. .++.||++++|+|+|+|+++.. .|+. +||+|+|
T Consensus 92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k 135 (135)
T 1r9h_A 92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSA-EDISPDRDGTILR 135 (135)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred hHHcCCCCCCCCCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence 99999984 4478999999999999999976 4777 8888876
No 33
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=170.65 Aligned_cols=113 Identities=22% Similarity=0.344 Sum_probs=101.4
Q ss_pred cccCCCC-eEEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 24 MKIVPGS-LMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 24 ~~~~~~g-~~~~~~~~G~g~-~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
..++++| ++|+++++|+|. ..|+.||.|.+||++++.||++|+++ .|+.|.+|.+++++||+++|.+|++
T Consensus 11 ~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~--------~p~~f~lG~g~~i~G~e~~L~gm~~ 82 (135)
T 2d9f_A 11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPLMDV 82 (135)
T ss_dssp EESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE--------EEEEEETTSCCSCTTTTTTGGGSCT
T ss_pred cEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC--------CCEEEEeCCCChhHHHHHHHhCCCC
Confidence 4455666 999999999997 34899999999999999899999963 4899999999999999999999999
Q ss_pred CcEEEEEEeCCCccCCCC-CCCCCCCCCCCCCceEEEEEEEeeecccc
Q 008780 102 GEVSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAKI 148 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~-~~~~~~~~ip~~~~l~~~v~l~~~~~~~~ 148 (554)
|+++.|+|||+++||..+ .+ +.|||+++++|+|+|+++....+
T Consensus 83 Ge~~~v~ip~~~aYG~~~~~~----~~Ip~~~~l~f~vel~~v~~~~~ 126 (135)
T 2d9f_A 83 GETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDRPD 126 (135)
T ss_dssp TCEEEEEECHHHHTCTTCCSS----SCCCTTCCEEEEEEEEEEESSCS
T ss_pred CCEEEEEEChhHccCcCCcCC----CccCCCCeEEEEEEEEEeecCCc
Confidence 999999999999999988 43 67999999999999999986543
No 34
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=99.86 E-value=1.6e-21 Score=183.22 Aligned_cols=111 Identities=25% Similarity=0.539 Sum_probs=102.2
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCC
Q 008780 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (554)
Q Consensus 22 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~ 101 (554)
....++++|++|+++++|+|.. |+.||.|.+||++++.||++|++++. ++.|+.|.+ +++++||+++|.+|++
T Consensus 114 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~ 186 (224)
T 1q6h_A 114 KGVKTSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIKK 186 (224)
T ss_dssp TTEEECTTSCEEEEEECCSSCC-CCTTCEEEEEEEEEETTSCEEEEGGG----GTSCEEEEG--GGSCHHHHHHGGGSCT
T ss_pred CCeEECCCceEEEEEecccCcc-ccCCCEEEEEEEEEeCCCCEEeeccc----cCCCEEEEc--CCcchhHHHHHcCCCC
Confidence 3455689999999999999987 99999999999999999999999997 678999999 5899999999999999
Q ss_pred CcEEEEEEeCCCccCCCCCCCCCCCCCCCCCceEEEEEEEeee
Q 008780 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (554)
Q Consensus 102 Ge~~~~~ip~~~~yg~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (554)
|++++|+|||+++||..+.+ + |||+++++|+|+|+++.
T Consensus 187 Gek~~v~IP~~laYG~~g~~----~-IPp~stLiF~VeL~~ik 224 (224)
T 1q6h_A 187 GGKIKLVIPPELAYGKAGVP----G-IPPNSTLVFDVELLDVK 224 (224)
T ss_dssp TCEEEEEECGGGTTTTTCBT----T-BCTTCCEEEEEEEEEEC
T ss_pred CCEEEEEECchhhcCcCCCC----C-CCCCCEEEEEEEEEEeC
Confidence 99999999999999998864 4 99999999999999873
No 35
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.86 E-value=4.1e-21 Score=164.22 Aligned_cols=106 Identities=23% Similarity=0.374 Sum_probs=98.6
Q ss_pred CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC--------CccEEEEeCCCCccchHHHHhccCCcCcE
Q 008780 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE--------GEPYFFTFGKSEVPKGLEMGIGTMTREEK 223 (554)
Q Consensus 152 d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~--------~~p~~~~~g~~~~~~gle~~l~~m~~Ge~ 223 (554)
..++.++++++|.|...|+.||.|+|||++++.||++|+++.. +.|+.|.+|.++++|||+++|.+|++||+
T Consensus 3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~ 82 (119)
T 3kz7_A 3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK 82 (119)
T ss_dssp SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence 3589999999999977799999999999999999999999864 48999999999999999999999999999
Q ss_pred EEEEEeCCccCCCCCCC--CCCCcceEEEEEeeeee
Q 008780 224 AVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHL 257 (554)
Q Consensus 224 ~~~~v~~~~~~g~~~~~--~ip~~~~l~~~v~l~~~ 257 (554)
++|+|||+++||+.+.+ .||++++|+|+|+|+++
T Consensus 83 ~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 83 ARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp EEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred EEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence 99999999999996553 69999999999999987
No 36
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=99.86 E-value=2.8e-21 Score=170.40 Aligned_cols=116 Identities=37% Similarity=0.585 Sum_probs=104.3
Q ss_pred eeeccc--CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHH
Q 008780 259 QVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMC 336 (554)
Q Consensus 259 ~~~d~~--~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~ 336 (554)
+.+|++ .|++|+|+++++|.|.. .|..++.|+|||+|++.| |++|+++ .+ +++|+.|.+|.+.+|+||+.+
T Consensus 25 ~~~di~~~~d~gv~~~i~~~G~G~~---~p~~gd~V~v~Y~g~~~d--G~~fdss-~~-~~~p~~f~lG~g~~i~G~e~~ 97 (144)
T 3o5e_A 25 QGEDITSKKDRGVLKIVKRVGNGEE---TPMIGDKVYVHYKGKLSN--GKKFDSS-HD-RNEPFVFSLGKGQVIKAWDIG 97 (144)
T ss_dssp HCEECCSSCSSSEEEEEEECCBSSC---CCCTTCEEEEEEEEECTT--SCEEEES-GG-GTSCEEEETTSSSSCHHHHHH
T ss_pred ccccccccCCCeEEEEEEECCCCCc---cCCCCCEEEEEEEEEECC--CCEEEee-cc-cCCCeEEEeCCCcccHHHHHH
Confidence 346887 89999999999999973 257899999999999876 8998554 43 478999999999999999999
Q ss_pred HhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780 337 VRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (554)
Q Consensus 337 l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~ 381 (554)
|.+|++||++.|.|||.++||..+.++.|||+++|+|+|+|+++.
T Consensus 98 l~gm~~Ge~~~v~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik 142 (144)
T 3o5e_A 98 VATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142 (144)
T ss_dssp HTTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred HhCCCCCCEEEEEEChHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence 999999999999999999999999888999999999999999875
No 37
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=99.85 E-value=4.9e-21 Score=174.90 Aligned_cols=127 Identities=30% Similarity=0.438 Sum_probs=101.5
Q ss_pred CCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCC-CchHHHHHHHhcCCcC
Q 008780 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPG 343 (554)
Q Consensus 265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~-~v~~g~~~~l~~M~~G 343 (554)
.+++|.++++++|.|..+ ..|+.|+|||+|++.+ +|++|++| +. +++|+.|.+|.+ .+++||+.+|.+|++|
T Consensus 47 ~~~gl~~~vl~~G~G~~~----~~Gd~V~v~Y~g~l~~-dG~~fdss-~~-~~~p~~f~lG~g~~vi~G~eeaL~gMk~G 119 (180)
T 2f4e_A 47 LDEKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKFEDT-WH-EQQPIELVLGKEKKELAGLAIGVASMKSG 119 (180)
T ss_dssp EETTEEEEEEECCBSCCB----CTTCEEEEEEEEEETT-TCCEEEET-TT-TTCCEEEETTSCCGGGHHHHHHHTTCCBT
T ss_pred CCCceEEEEEeCCCCCCC----CCCCEEEEEEEEEECC-CCcEEecc-Cc-cCCCEEEEeCCCCchhHHHHHHHhCCCCC
Confidence 346799999999999854 7899999999999875 48888554 43 478999999999 9999999999999999
Q ss_pred cEEEEEeCCCCccccCCC--CCCCCCCCeEEEEEEEcccccCCC---CCCCChhhhhHHH
Q 008780 344 EIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEA 398 (554)
Q Consensus 344 E~~~~~i~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~~~~---~~~~~~~~~~~~a 398 (554)
|++.|.|||+++||..+. ++.||++++++|+|+|+++..+.+ .|.|+.++++..|
T Consensus 120 e~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A 179 (180)
T 2f4e_A 120 ERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA 179 (180)
T ss_dssp CEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred CEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence 999999999999999886 457999999999999999998877 8899999998776
No 38
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=162.00 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=102.3
Q ss_pred ccCCCCeEEEEEecCCC-cCCCCCCceEEEEEEEEeC-CCcEEEecC---CCccEEEEeCCCCccchHHHHhccCCcCcE
Q 008780 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTG-DGKLILSHR---EGEPYFFTFGKSEVPKGLEMGIGTMTREEK 223 (554)
Q Consensus 149 ~~~d~gl~k~i~~~g~g-~~~~~~g~~V~v~y~~~~~-~g~~~~s~~---~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~ 223 (554)
...+.++.++++++|.+ ...|+.||.|+|||++++. ||++|+++. .++|+.|.+|.++++|||+++|.+|++||+
T Consensus 8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~ 87 (125)
T 4dip_A 8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK 87 (125)
T ss_dssp GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence 34567999999999982 3889999999999999998 999999986 578999999999999999999999999999
Q ss_pred EEEEEeCCccCCCCCCCCCCCcceEEEEEeeeeeee
Q 008780 224 AVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQ 259 (554)
Q Consensus 224 ~~~~v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~ 259 (554)
++|.|||+++||+.+.+.||++++|+|+|+|+++.+
T Consensus 88 ~~~~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 88 RKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp EEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred EEEEEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEc
Confidence 999999999999987779999999999999999863
No 39
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.85 E-value=1.2e-20 Score=163.17 Aligned_cols=108 Identities=31% Similarity=0.474 Sum_probs=101.0
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~ 229 (554)
.+.++.+.++++|.|...|+.||.|+|||++++.||++|+++. .++|+.|.+|.++++|||+++|.+|++||++.|+||
T Consensus 17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip 96 (128)
T 3o5q_A 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 96 (128)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 6789999999999996689999999999999999999999986 478999999999999999999999999999999999
Q ss_pred CCccCCCCC-CCCCCCcceEEEEEeeeeee
Q 008780 230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLI 258 (554)
Q Consensus 230 ~~~~~g~~~-~~~ip~~~~l~~~v~l~~~~ 258 (554)
|+++||..+ ++.||++++|+|+|+|+++.
T Consensus 97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~ 126 (128)
T 3o5q_A 97 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 126 (128)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred hHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence 999999854 46899999999999999985
No 40
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.85 E-value=1.3e-20 Score=170.06 Aligned_cols=153 Identities=22% Similarity=0.371 Sum_probs=125.8
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (554)
.+++++.+..++++|+.+|+.|+|.+|+..|++|+..+... .|.+ ++..........+++|+|.||+++++|.+|
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE-PEWVELDRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS-HHHHHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45678899999999999999999999999999999965432 3333 334455666788999999999999999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Q 008780 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCL 545 (554)
Q Consensus 467 ~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f 545 (554)
+.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++...++..|..+..+++ ..++++ ++|++||
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k--~~~~~~f 160 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR--VTYSKMF 160 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSC--C------
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 9999999999999999999999999999999999999999999999985478889999988887 556666 8999999
Q ss_pred c
Q 008780 546 T 546 (554)
Q Consensus 546 ~ 546 (554)
+
T Consensus 161 ~ 161 (162)
T 3rkv_A 161 Q 161 (162)
T ss_dssp -
T ss_pred C
Confidence 6
No 41
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.84 E-value=3.9e-21 Score=167.42 Aligned_cols=116 Identities=30% Similarity=0.478 Sum_probs=98.4
Q ss_pred eeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHh
Q 008780 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR 338 (554)
Q Consensus 259 ~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~ 338 (554)
++.|++.+++|+++++++|.|..+ ..++.|+|||+|++.+ +|++|++ +.. +++|+.|.+|.+.+++||+.+|.
T Consensus 18 ~~~~v~~~~gl~~~vl~~G~g~~~----~~gd~V~v~Y~g~l~~-~G~~fds-s~~-~~~p~~f~lG~g~~i~G~e~aL~ 90 (134)
T 3b7x_A 18 RMLDISGDRGVLKDVIREGAGDLV----APDASVLVKYSGYLEH-MDRPFDS-NYF-RKTPRLMKLGEDITLWGMELGLL 90 (134)
T ss_dssp TCEESSSSSSEEEEEEECCEEEEC----CTTCEEEEEEEEECTT-CSSCSEE-C--------CEEC-CCCCCHHHHHHHH
T ss_pred ccceeeCCCCEEEEEEEcCCCCCC----CCCCEEEEEEEEEECC-CCeEEEe-cCC-CCCCEEEEcCCcchhHHHHHHHh
Confidence 357899999999999999999865 5799999999999874 4888854 443 46899999999999999999999
Q ss_pred cCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780 339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (554)
Q Consensus 339 ~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~ 381 (554)
+|++||++.|.|||++|||..+.++.||++++++|+|+|+++.
T Consensus 91 gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 91 SMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp TCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence 9999999999999999999999888899999999999999875
No 42
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.84 E-value=2.3e-20 Score=156.33 Aligned_cols=104 Identities=27% Similarity=0.442 Sum_probs=96.0
Q ss_pred CeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCc
Q 008780 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY 232 (554)
Q Consensus 154 gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~ 232 (554)
|+.++++++|.|...|+.||.|++||++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++||++++.|||++
T Consensus 1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ 80 (107)
T 2ppn_A 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80 (107)
T ss_dssp CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence 57899999999955599999999999999999999999863 68999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCCCCcceEEEEEeeeee
Q 008780 233 LTPSPL-MPVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 233 ~~g~~~-~~~ip~~~~l~~~v~l~~~ 257 (554)
+||+.+ ++.||++++|+|+|+|+++
T Consensus 81 ayG~~~~~~~Ip~~~~l~f~v~l~~v 106 (107)
T 2ppn_A 81 AYGATGHPGIIPPHATLVFDVELLKL 106 (107)
T ss_dssp TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence 999864 4679999999999999987
No 43
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.84 E-value=3.4e-20 Score=156.89 Aligned_cols=106 Identities=23% Similarity=0.323 Sum_probs=97.7
Q ss_pred CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeC
Q 008780 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTS 230 (554)
Q Consensus 152 d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~ 230 (554)
+.|+.++++++|.|...|+.||.|++||++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++||+++|.|||
T Consensus 5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip~ 84 (113)
T 1yat_A 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG 84 (113)
T ss_dssp GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECG
T ss_pred CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECH
Confidence 4589999999999944499999999999999999999999875 689999999999999999999999999999999999
Q ss_pred CccCCCCC-CCCCCCcceEEEEEeeeee
Q 008780 231 QYLTPSPL-MPVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 231 ~~~~g~~~-~~~ip~~~~l~~~v~l~~~ 257 (554)
+++||+.+ ++.||++++|+|+|+|+++
T Consensus 85 ~~ayG~~~~~~~Ip~~~~l~f~vel~~i 112 (113)
T 1yat_A 85 PYAYGPRGFPGLIPPNSTLVFDVELLKV 112 (113)
T ss_dssp GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred HHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence 99999864 4569999999999999987
No 44
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=154.42 Aligned_cols=96 Identities=25% Similarity=0.476 Sum_probs=89.2
Q ss_pred CCCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCC
Q 008780 43 STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV 122 (554)
Q Consensus 43 ~~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~ 122 (554)
..++.||.|.+||++++.||++|++|+. .+.|+.|.+|.+++++||+++|.+|++|+++.|+|||+++||..+.+
T Consensus 4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~- 78 (102)
T 2pbc_A 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLP----QNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP- 78 (102)
T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEESTT----TTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-
T ss_pred CcCCCCCEEEEEEEEEECCCCEEEeCCC----CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-
Confidence 3489999999999999889999999986 56899999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCceEEEEEEEeeecc
Q 008780 123 AAPSTFPKDEELHFEIEMIDFAKA 146 (554)
Q Consensus 123 ~~~~~ip~~~~l~~~v~l~~~~~~ 146 (554)
+.||++++++|+|+|+++...
T Consensus 79 ---~~Ip~~~~l~f~v~l~~v~~~ 99 (102)
T 2pbc_A 79 ---PKIPGGATLVFEVELLKIERR 99 (102)
T ss_dssp ---TTBCTTCCEEEEEEEEEEGGG
T ss_pred ---CCcCcCCeEEEEEEEEEeccc
Confidence 679999999999999999754
No 45
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.83 E-value=3.9e-20 Score=160.52 Aligned_cols=107 Identities=23% Similarity=0.321 Sum_probs=99.1
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (554)
Q Consensus 150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v 228 (554)
..+.++.++++++|.| ..|+.||.|+|+|++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++||+++|.|
T Consensus 25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i 103 (133)
T 2y78_A 25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI 103 (133)
T ss_dssp ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence 3567999999999999 7899999999999999999999999864 6899999999999999999999999999999999
Q ss_pred eCCccCCCCCC-CCCCCcceEEEEEeeeee
Q 008780 229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~ 257 (554)
||+++||+.+. +.||++++|+|+|+|+++
T Consensus 104 p~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 104 PPQLGYGARGAGGVIPPNATLVFEVELLDV 133 (133)
T ss_dssp CGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred CcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence 99999998654 469999999999999875
No 46
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=99.82 E-value=6.3e-20 Score=170.93 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=97.0
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeC
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTS 230 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~ 230 (554)
.+.|+.++++++|+| ..|..||.|+|||++++.||++|+|+ +.|++|.+| ++||||+++|.+|++|++++|+|||
T Consensus 115 ~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss--~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IPp 189 (219)
T 3oe2_A 115 LADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS--TQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPS 189 (219)
T ss_dssp CGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC--SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred CCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc--CCcEEEEec--chhHHHHHHHhCCCCCCEEEEEECc
Confidence 557999999999999 78999999999999999999999998 889999998 8999999999999999999999999
Q ss_pred CccCCCCCCC-CCCCcceEEEEEeeeeee
Q 008780 231 QYLTPSPLMP-VVEGCEEVHFEVELVHLI 258 (554)
Q Consensus 231 ~~~~g~~~~~-~ip~~~~l~~~v~l~~~~ 258 (554)
+++||..+.+ .|||+++|+|+|+|+++.
T Consensus 190 ~lAYG~~g~~~~IPpnstLvFeVeLl~Ik 218 (219)
T 3oe2_A 190 DQAYGAEGAGDLIDPFTPLVFEIELIAVS 218 (219)
T ss_dssp GGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred hhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence 9999997655 599999999999999985
No 47
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.82 E-value=1.4e-19 Score=156.83 Aligned_cols=114 Identities=32% Similarity=0.548 Sum_probs=100.6
Q ss_pred ecccCCccEEEEEeeCC-CC--CCCCCCCCCCCeEEEEEEEEE-ecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHH
Q 008780 261 RDMLGDGRLIKRRIRDG-KG--EFPMDCPLHDSLLCVHYKGML-LNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMC 336 (554)
Q Consensus 261 ~d~~~dg~l~k~il~~G-~g--~~~~~~p~~~~~V~v~y~g~~-~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~ 336 (554)
.+++.+|.++++++++| .| .. |..++.|+|||.+++ .| |++|+++. . +++|+.|.+|.+.+++||+.+
T Consensus 10 ~~~~~~g~~~~~il~~G~~g~g~~----~~~gd~V~v~Y~g~~~~d--G~~fd~s~-~-~~~p~~f~lG~g~~i~g~e~~ 81 (129)
T 2vn1_A 10 VELTADGGVIKTILKKGDEGEENI----PKKGNEVTVHYVGKLEST--GKVFDSSF-D-RNVPFKFHLEQGEVIKGWDIC 81 (129)
T ss_dssp EECSTTSSEEEEEEECCCCSGGGS----CCTTCEEEEEEEEEETTT--CCEEEEGG-G-TTCCEEEETTSSSSCHHHHHH
T ss_pred cEECCCCCEEEEEEeCCCCCCCCc----CCCCCEEEEEEEEEECCC--CeEEEecC-C-CCccEEEEeCCCCcCHHHHHH
Confidence 46688999999999977 44 44 478999999999998 44 89985554 3 468999999999999999999
Q ss_pred HhcCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEccccc
Q 008780 337 VRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382 (554)
Q Consensus 337 l~~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~ 382 (554)
|.+|++||++.|.|||+++||..+.++.||++++++|+|+|+++..
T Consensus 82 l~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 82 VSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp HTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred HhCCCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence 9999999999999999999999998878999999999999999875
No 48
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.81 E-value=1.4e-19 Score=154.22 Aligned_cols=113 Identities=27% Similarity=0.372 Sum_probs=100.8
Q ss_pred eeecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHh
Q 008780 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR 338 (554)
Q Consensus 259 ~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~ 338 (554)
.+.+++.+|++.++++++|.|... .|..++.|++||++++.+ |++|++ ++|+.|.+|.+.+++||+.+|.
T Consensus 5 ~~~~~~~~g~~~~~vl~~G~G~~~--~~~~gd~V~v~y~g~~~d--G~~~ds------~~p~~f~lG~~~~i~g~e~~l~ 74 (118)
T 2awg_A 5 EWLDILGNGLLRKKTLVPGPPGSS--RPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVP 74 (118)
T ss_dssp CEEESSSSSSEEEEEEECCCTTCC--CCCTTSEEEEEEEEECTT--SCEEEE------EEEEEEETTSSCSCHHHHHHGG
T ss_pred cceEECCCCCEEEEEEEcCCCCCc--cCCCCCEEEEEEEEEECC--CCEEEC------CCCEEEEECCCChhHHHHHHHh
Confidence 357889999999999999999721 247899999999999855 888843 2689999999999999999999
Q ss_pred cCCcCcEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccc
Q 008780 339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (554)
Q Consensus 339 ~M~~GE~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~ 381 (554)
+|++||++.|.|||+++||..+.++.||++++++|+|+|+++.
T Consensus 75 gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 75 LMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp GSCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence 9999999999999999999999888899999999999999875
No 49
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.81 E-value=1.3e-19 Score=156.72 Aligned_cols=107 Identities=33% Similarity=0.464 Sum_probs=96.2
Q ss_pred CCCCeEEE--EEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEE
Q 008780 151 DDFGVVKK--VINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY 227 (554)
Q Consensus 151 ~d~gl~k~--i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~ 227 (554)
...|+.+. ++++|.|...|+.||.|+++|++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++||++.|.
T Consensus 20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ 99 (130)
T 2lgo_A 20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99 (130)
T ss_dssp SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence 44566666 999999954499999999999999999999999864 589999999999999999999999999999999
Q ss_pred EeCCccCCCCC-CCCCCCcceEEEEEeeeee
Q 008780 228 VTSQYLTPSPL-MPVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 228 v~~~~~~g~~~-~~~ip~~~~l~~~v~l~~~ 257 (554)
|||+++||+.+ ++.||++++|+|+|+|+++
T Consensus 100 ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 100 IPYQLAYGERGYPPVIPPKATLVFEVELLAV 130 (130)
T ss_dssp ECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred ECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence 99999999864 4569999999999999875
No 50
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=160.59 Aligned_cols=116 Identities=27% Similarity=0.358 Sum_probs=102.4
Q ss_pred eecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhc
Q 008780 260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339 (554)
Q Consensus 260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~ 339 (554)
+.|++.+|.+.++++++|.|.. ..|..++.|+|||+|++.| |++|++ ++|+.|.+|.+.+|+||+.+|.+
T Consensus 36 ~~~~~~sG~v~~~vl~~G~G~~--~~p~~gd~V~v~Y~g~l~d--G~~fds------~~p~~f~lG~g~vi~G~eeaL~g 105 (157)
T 2jwx_A 36 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVPL 105 (157)
T ss_dssp CEESSSSSSEEEEEEECCSTTS--CCCCTTEEEEEEEEEECTT--SCEEEE------EEEEEEETTTTSSCHHHHHHTTT
T ss_pred cceECCCCCEEEEEEEccCCCc--cCCCCCCEEEEEEEEEECC--CCEeec------CCCEEEEeCCCChhHHHHHHHcC
Confidence 3578899999999999999972 1247899999999999866 898854 26899999999999999999999
Q ss_pred CCcCcEEEEEeCCCCccccCC-CCCCCCCCCeEEEEEEEcccccCCC
Q 008780 340 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPKD 385 (554)
Q Consensus 340 M~~GE~~~~~i~~~~~yg~~g-~~~~ip~~~~l~~~ieL~~~~~~~~ 385 (554)
|++||++.|.||++++||..+ .++.|||+++++|+|+|+++.....
T Consensus 106 Mk~Ge~~~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~~~ 152 (157)
T 2jwx_A 106 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLEH 152 (157)
T ss_dssp SCTTCEEEEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEECSC
T ss_pred CCCCCEEEEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcccc
Confidence 999999999999999999999 6678999999999999999987653
No 51
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.81 E-value=3.6e-19 Score=166.38 Aligned_cols=109 Identities=23% Similarity=0.327 Sum_probs=100.4
Q ss_pred cccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEE
Q 008780 148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVI 226 (554)
Q Consensus 148 ~~~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~ 226 (554)
....+.|+.+.++++|.| ..|+.||.|++||++++.||++|+++. .+.|+.|.+|.++++|||+++|.+|++||+++|
T Consensus 99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v 177 (209)
T 3uf8_A 99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL 177 (209)
T ss_dssp CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence 345678999999999999 669999999999999999999999986 478999999999999999999999999999999
Q ss_pred EEeCCccCCCCCC-CCCCCcceEEEEEeeeee
Q 008780 227 YVTSQYLTPSPLM-PVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 227 ~v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~ 257 (554)
+|||+++||+.+. +.||++++|+|+|+|+++
T Consensus 178 ~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 178 TIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209 (209)
T ss_dssp EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence 9999999999655 459999999999999875
No 52
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=159.86 Aligned_cols=122 Identities=26% Similarity=0.324 Sum_probs=107.5
Q ss_pred eecccCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhc
Q 008780 260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339 (554)
Q Consensus 260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~ 339 (554)
+.+++.+|.+.++++++|.|.. ..|..++.|+|||++++.| |++|++ ++|+.|.+|.+.+++||+.+|.+
T Consensus 10 ~~~~~~~g~l~~~vl~~G~G~~--~~~~~gd~V~v~Y~g~~~d--G~~fds------~~p~~f~lG~g~~i~G~e~~L~g 79 (135)
T 2d9f_A 10 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVPL 79 (135)
T ss_dssp CEESSSSSSSEEEEEECCCSSC--CCCCTTSEEEEEEEEEESS--SCEEEE------EEEEEEETTSCCSCTTTTTTGGG
T ss_pred CcEECCCCCEEEEEEEcCCCCC--ccCCCCCEEEEEEEEEECC--CCEEec------CCCEEEEeCCCChhHHHHHHHhC
Confidence 4688999999999999999972 1247899999999999865 888843 36899999999999999999999
Q ss_pred CCcCcEEEEEeCCCCccccCC-CCCCCCCCCeEEEEEEEcccccCCCCCCCCh
Q 008780 340 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPKDWTGLSF 391 (554)
Q Consensus 340 M~~GE~~~~~i~~~~~yg~~g-~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~ 391 (554)
|++||++.|.||++++||..+ .++.||++++++|+|+|+++....+...++.
T Consensus 80 m~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e~~s~ 132 (135)
T 2d9f_A 80 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSGP 132 (135)
T ss_dssp SCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred CCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence 999999999999999999998 6678999999999999999998777666554
No 53
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=1.2e-18 Score=150.51 Aligned_cols=115 Identities=28% Similarity=0.543 Sum_probs=108.1
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.+.++.++++|+.+|++|+|++|+..|++|++ ++|.+ ..+++|+|.||.++|+|++|+.+|++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 45788999999999999999999999999999 88988 7899999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
+++|+++.+|+++|.++..+|++++|+.+|++|++++|+| .+++..|..+
T Consensus 75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~a~~~l~~~ 124 (126)
T 4gco_A 75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN-EEAREGVRNC 124 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 6677666654
No 54
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.80 E-value=1.7e-19 Score=156.05 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=98.7
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhcc------CCcCc
Q 008780 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGT------MTREE 222 (554)
Q Consensus 150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~------m~~Ge 222 (554)
..+.|+.++++++|.| ..|+.||.|+|||++++.||++|+++.. ++|+.|.+|.++++|||+++|.+ |++|+
T Consensus 9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge 87 (129)
T 1u79_A 9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG 87 (129)
T ss_dssp ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence 3557999999999999 7899999999999999999999999863 68999999999999999999998 99999
Q ss_pred EEEEEEeCCccCCCCCC------CCCCCcceEEEEEeeeee
Q 008780 223 KAVIYVTSQYLTPSPLM------PVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 223 ~~~~~v~~~~~~g~~~~------~~ip~~~~l~~~v~l~~~ 257 (554)
+++|.|||+++||+.+. +.||++++|+|+|+|+++
T Consensus 88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 99999999999998653 579999999999999986
No 55
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.79 E-value=3.3e-19 Score=160.15 Aligned_cols=120 Identities=26% Similarity=0.408 Sum_probs=102.5
Q ss_pred cCCccEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEcCCCCchHHHHHHHhcCCcC
Q 008780 264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343 (554)
Q Consensus 264 ~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~g~~~~~~g~~~~~t~~~~~~~~~~f~lG~~~v~~g~~~~l~~M~~G 343 (554)
+.+++|+++++++|.|.. +|..++.|+|||.|++.| |++|+++. . ++.|+.|.+ +.+|+||+.+|.+|++|
T Consensus 34 ~~~sGl~~~vl~~G~G~~---~~~~gd~V~v~Y~g~l~d--G~~fdss~-~-~g~p~~f~l--g~vI~G~eeaL~gMk~G 104 (167)
T 1jvw_A 34 KLPSGLVFQRIARGSGKR---APAIDDKCEVHYTGRLRD--GTVFDSSR-E-RGKPTTFRP--NEVIKGWTEALQLMREG 104 (167)
T ss_dssp ECTTSCEEEEEECCCCSB---CCCTTCCEEEEEEEECTT--SCEEEEHH-H-HTSCEEECG--GGSCHHHHHHHTTCCTT
T ss_pred ECCCCEEEEEEEcCCCCc---CCCCCCEEEEEEEEEECC--CCEEeecc-c-cCCCEEEEe--CchhHHHHHHHcCCCCC
Confidence 456789999999999986 147899999999999876 99985554 3 468999999 47999999999999999
Q ss_pred cEEEEEeCCCCccccCCCCCCCCCCCeEEEEEEEcccccCCCCCCCChhhh
Q 008780 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGI 394 (554)
Q Consensus 344 E~~~~~i~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~~~ 394 (554)
|++.|.|||+++||..+.++.||||++|+|+|+|+++.++. +.++.++.
T Consensus 105 e~~~~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~~--~~~~~~e~ 153 (167)
T 1jvw_A 105 DRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGG--KGRTAEEV 153 (167)
T ss_dssp CEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGC--CSCBHHHH
T ss_pred CEEEEEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcCC--CCCCHHHH
Confidence 99999999999999999888899999999999999998643 23555554
No 56
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=99.78 E-value=1.1e-18 Score=162.81 Aligned_cols=107 Identities=24% Similarity=0.287 Sum_probs=98.4
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEE
Q 008780 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (554)
Q Consensus 150 ~~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v 228 (554)
..+.|+.++++++|+| ..|+.||.|+|||++++.||++|+++. ++.|++|.+ ++++|||+++|.+|++|++++|+|
T Consensus 103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I 179 (213)
T 1fd9_A 103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV 179 (213)
T ss_dssp ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence 3567999999999999 889999999999999999999999986 478999999 489999999999999999999999
Q ss_pred eCCccCCCCCC-CCCCCcceEEEEEeeeeeee
Q 008780 229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLIQ 259 (554)
Q Consensus 229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~~ 259 (554)
||+++||..+. +.||++++|+|+|+|+++.+
T Consensus 180 P~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~ 211 (213)
T 1fd9_A 180 PSGLAYGPRSVGGPIGPNETLIFKIHLISVKK 211 (213)
T ss_dssp CGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred CchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence 99999998654 57999999999999999863
No 57
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=99.78 E-value=1.3e-18 Score=163.41 Aligned_cols=104 Identities=23% Similarity=0.363 Sum_probs=96.9
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEEecC-CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe
Q 008780 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (554)
Q Consensus 151 ~d~gl~k~i~~~g~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~ 229 (554)
.+.++.+.++++|.| ..|+.||.|+|||++++.||++|+|+. ++.|+.|.+ ++++|||+++|.+|++|++++|+||
T Consensus 119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP 195 (224)
T 1q6h_A 119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP 195 (224)
T ss_dssp CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence 457999999999999 789999999999999999999999986 478999999 4899999999999999999999999
Q ss_pred CCccCCCCCCCCCCCcceEEEEEeeeee
Q 008780 230 SQYLTPSPLMPVVEGCEEVHFEVELVHL 257 (554)
Q Consensus 230 ~~~~~g~~~~~~ip~~~~l~~~v~l~~~ 257 (554)
|+++||..+.+.||++++|+|+|+|+++
T Consensus 196 ~~laYG~~g~~~IPp~stLiF~VeL~~i 223 (224)
T 1q6h_A 196 PELAYGKAGVPGIPPNSTLVFDVELLDV 223 (224)
T ss_dssp GGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred chhhcCcCCCCCCCCCCEEEEEEEEEEe
Confidence 9999999766669999999999999987
No 58
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.78 E-value=7.6e-19 Score=155.83 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=114.3
Q ss_pred CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-HHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-KVFVGKRNLLHLNVAACLLKLGECRKSI 467 (554)
Q Consensus 389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (554)
|.+-.....+..+++.|+.+|+.|+|++|+..|++||+ ++|.+.+.. .........+|+|+|.|+.++|+|++|+
T Consensus 2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl 77 (159)
T 2hr2_A 2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77 (159)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHH
Confidence 34444577899999999999999999999999999999 555521100 0011223459999999999999999999
Q ss_pred HHHHHHHhh-------CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 468 EACNKVLDA-------NPAHVKGL----YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 468 ~~~~~al~~-------~p~~~ka~----~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
.+|++||++ +|+++++| |++|.++..+|++++|+.+|++|++++|++ ..+...+..+++..+
T Consensus 78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d-~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER-KGETPGKERMMEVAI 150 (159)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-CSCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHH
Confidence 999999999 99999999 999999999999999999999999999988 567777777777665
No 59
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=143.41 Aligned_cols=94 Identities=24% Similarity=0.326 Sum_probs=86.7
Q ss_pred CCCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCC-CCCCCC
Q 008780 167 ETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL-MPVVEG 244 (554)
Q Consensus 167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~-~~~ip~ 244 (554)
..++.||.|++||++++.||++|+++.. ++|+.|.+|.++++|||+++|.+|++|++++|.|||+++||+.+ ++.||+
T Consensus 4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~ 83 (102)
T 2pbc_A 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG 83 (102)
T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence 6789999999999999899999999864 68999999999999999999999999999999999999999864 356999
Q ss_pred cceEEEEEeeeeeeee
Q 008780 245 CEEVHFEVELVHLIQV 260 (554)
Q Consensus 245 ~~~l~~~v~l~~~~~~ 260 (554)
+++|+|+|+|+++.+.
T Consensus 84 ~~~l~f~v~l~~v~~~ 99 (102)
T 2pbc_A 84 GATLVFEVELLKIERR 99 (102)
T ss_dssp TCCEEEEEEEEEEGGG
T ss_pred CCeEEEEEEEEEeccc
Confidence 9999999999999653
No 60
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.77 E-value=1.9e-17 Score=170.33 Aligned_cols=155 Identities=26% Similarity=0.449 Sum_probs=127.9
Q ss_pred CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (554)
Q Consensus 389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (554)
.+.++.+..+..++.+|+.+++.|+|++|+..|++|++++.... ..+.++..........+++|+|.||+++++|++|+
T Consensus 214 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 293 (370)
T 1ihg_A 214 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV 293 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 35788899999999999999999999999999999999654321 01112222344556789999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008780 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENSLKGCLT 546 (554)
Q Consensus 468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~y~~~f~ 546 (554)
.+|++||+++|+++++|+++|.+|..++++++|+.+|++|++++|++ ..++..|..+...+. .+++++ ..|++||+
T Consensus 294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~~~~l~~~~~~~~~~~~a~k--~~~~kmf~ 370 (370)
T 1ihg_A 294 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEK--AAYAKMFA 370 (370)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHH--CCC-----
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhC
Confidence 99999999999999999999999999999999999999999999998 678888888888777 555555 78898884
No 61
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.76 E-value=2.1e-17 Score=153.93 Aligned_cols=169 Identities=22% Similarity=0.255 Sum_probs=129.4
Q ss_pred EEEEEcccccCCCCCCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh-----HHHHHhhhHH
Q 008780 373 WEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----EGKVFVGKRN 447 (554)
Q Consensus 373 ~~ieL~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e-----e~~~~~~~~~ 447 (554)
....+..++...+.|.++.++....+..+...|+.++..|+|.+|+..|++|+. +.|.+.+ .......+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD----FFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHhcccccchhhHHHHHHHHHH
Confidence 334556677888899999999999999999999999999999999999999999 5554431 1112233346
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
.+++|+|.||.++++|++|+.+|++++.++|.++.+++++|.++..++++++|+..|+++++++|++ ..+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 678888888887
Q ss_pred HHH-HHHHHHHHHHHHhhcccc
Q 008780 528 QRQ-VKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 528 ~~~-~~~~~~~~~~y~~~f~~~ 548 (554)
... ..+..+ ..|+++|+..
T Consensus 168 ~~~~~~~~~~--~~~~~~f~~~ 187 (198)
T 2fbn_A 168 KLKEARKKDK--LTFGGMFDKG 187 (198)
T ss_dssp HHHHHHC---------------
T ss_pred HHHHHHHHHH--HHHHHHhccc
Confidence 776 455554 7899999864
No 62
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=1.4e-16 Score=137.59 Aligned_cols=115 Identities=21% Similarity=0.354 Sum_probs=103.5
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
..+.|..+++.|+.+|++|+|++|+..|++|++ ++|.+ ..+|+|+|.||+++++|++|+.+|+++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~-----------~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN-----------ITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 456788999999999999999999999999999 88887 789999999999999999999999999
Q ss_pred HhhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 474 LDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 474 l~~~p~~-------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
++++|++ +++|+++|.++..++++++|+..|++++.++|+ ++....|..+
T Consensus 69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~l 125 (127)
T 4gcn_A 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD--PELVKKVKEL 125 (127)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC--HHHHHHHHHH
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--HHHHHHHHHh
Confidence 9998876 468999999999999999999999999999986 3455555444
No 63
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.3e-16 Score=131.85 Aligned_cols=116 Identities=26% Similarity=0.405 Sum_probs=107.7
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+..+|+.+++.|+|++|+..|+++++ +.|.+ ..+++++|.||.++++|++|+.++++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999 88887 689999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSKLKKQ 528 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~------P~~~~~~~~~l~~l~~~ 528 (554)
+|+++.+|+++|.++..+|++++|+..|+++++++ |++ ..+...+..+..+
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~-~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYKASQQ 124 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 876 6677777766554
No 64
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.66 E-value=1.5e-15 Score=135.68 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=75.7
Q ss_pred CCCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCC
Q 008780 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (554)
Q Consensus 44 ~~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~ 123 (554)
.++.||.|.+||++++.||++|++|+. .+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+++||..
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~----~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~----- 94 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRN----NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP----- 94 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC-----
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----
Confidence 478999999999999999999999986 55799999999999999999999999999999999999999976
Q ss_pred CCCCCCCCCceEEEEEEEee
Q 008780 124 APSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 124 ~~~~ip~~~~l~~~v~l~~~ 143 (554)
+..++..|..-.+
T Consensus 95 -------~~~lv~~vp~~~f 107 (169)
T 4dt4_A 95 -------SPDLIQYFSRREF 107 (169)
T ss_dssp -------CGGGEEEEEGGGG
T ss_pred -------ChHHEEEeCHHHC
Confidence 4577777765555
No 65
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.64 E-value=4.4e-15 Score=132.29 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=100.7
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.+.+..+...|..+++.|+|++|+..|++++. ++|.+ ..+|+++|.||..+|+|++|+.+|++++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~-----------~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYN-----------VDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44677899999999999999999999999999 89988 7899999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+++|+++.+|+++|.+|..+|++++|+..|++|++++|++
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999985
No 66
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.62 E-value=1.7e-14 Score=127.47 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=73.5
Q ss_pred CCCCCCEEEEEEEEEec-CCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCC
Q 008780 44 TPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV 122 (554)
Q Consensus 44 ~~~~gd~V~~~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~ 122 (554)
.++.||.|++||++++. +|++|++|+. ..|+.|.+|.+++++||+++|.+|++|+++.|.|||+.+||..+
T Consensus 6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~-----~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~--- 77 (151)
T 2kr7_A 6 LESIKQAALIEYEVREQGSSIVLDSNIS-----KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE--- 77 (151)
T ss_dssp CTTSCCEEEEEEEEEESSCSCEEEESTT-----TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC---
T ss_pred CCCCCCEEEEEEEEEECCCCCEEEeCCC-----CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC---
Confidence 37899999999999987 9999999984 46999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCCCceEEEEEEEee
Q 008780 123 AAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 123 ~~~~~ip~~~~l~~~v~l~~~ 143 (554)
..+++.|....+
T Consensus 78 ---------~~~v~~v~~~~f 89 (151)
T 2kr7_A 78 ---------SSYLQEVPRDQF 89 (151)
T ss_dssp ---------SCEEEEEEGGGG
T ss_pred ---------cceEEEEcHHHc
Confidence 467777655544
No 67
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=7.5e-15 Score=132.20 Aligned_cols=122 Identities=19% Similarity=0.311 Sum_probs=108.6
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
....+..+..+|+.+++.|+|++|+..|+++++ +.|.+ ..+++++|.||+++++|++|+.+++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345788999999999999999999999999999 78887 789999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHH
Q 008780 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP-DATAALSKLKKQRQ 530 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~-~~~~~l~~l~~~~~ 530 (554)
++++|+++.+|+++|.++..+|++++|+.+|+++++++|++.. .....+..++.++.
T Consensus 72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 129 (164)
T 3sz7_A 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129 (164)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998832 14445555554443
No 68
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.60 E-value=6.3e-15 Score=130.44 Aligned_cols=86 Identities=24% Similarity=0.292 Sum_probs=72.7
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccC---------CCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCcc
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSE---------YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY 115 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~---------~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~y 115 (554)
++.||.|++||++++ ||++|++|+.. .+..+.|+.|.+|.+++++||++||.+|++|++++|.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 578999999999999 99999999851 00013699999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 116 GEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 116 g~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
|..+ ..++..|..-.+
T Consensus 81 G~~~------------~~~V~~v~~~~f 96 (157)
T 3pr9_A 81 GKRD------------PSKIKLIPLSEF 96 (157)
T ss_dssp CCCC------------GGGEEEEEHHHH
T ss_pred CCCC------------hHhEEEcCHHHC
Confidence 9764 566776655544
No 69
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.60 E-value=9.5e-16 Score=128.56 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=74.7
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||.|.++|++++ ||++|++++ +.|+.|.+|.+++++||+++|.+|++|+++.|.||+...||..+.+
T Consensus 30 ~~~gD~V~v~Y~g~~-dG~~fdss~------~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~~--- 99 (113)
T 1hxv_A 30 LANGDIAIIDFTGIV-DNKKLASAS------AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKELQ--- 99 (113)
T ss_dssp CCSSEEEEEEEEEEE-TTEECSTTC------CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGGG---
T ss_pred CCCCCEEEEEEEEEE-CCEEcccCC------ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCCC---
Confidence 899999999999998 999999886 3699999999999999999999999999999999733349977643
Q ss_pred CCCCCCCCceEEEEEEEeee
Q 008780 125 PSTFPKDEELHFEIEMIDFA 144 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~ 144 (554)
+++++|+|+|++++
T Consensus 100 ------g~~l~F~V~l~~Vk 113 (113)
T 1hxv_A 100 ------SKPVTFEVVLKAIK 113 (113)
T ss_dssp ------SCCCEEEEEECCBC
T ss_pred ------CCEEEEEEEEEEEC
Confidence 79999999998863
No 70
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.58 E-value=1.3e-14 Score=130.43 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=66.5
Q ss_pred CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCC
Q 008780 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL 238 (554)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~ 238 (554)
++.||.|+++|++++.||++|+|+..++|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||..+
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~ 72 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence 6789999999999988999999998779999999999999999999999999999999999999999864
No 71
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=99.57 E-value=2.2e-15 Score=133.28 Aligned_cols=87 Identities=20% Similarity=0.315 Sum_probs=73.6
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCC--------C-CCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCcc
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEY--------G-GKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY 115 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~--------~-~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~y 115 (554)
++.||.|++||++++.||++|++|+.+. . ....|+.|.+|.+++++||+++|.+|++|+++.|.|||+++|
T Consensus 2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY 81 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81 (151)
T ss_dssp CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence 6899999999999988999999996200 0 023699999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEEEee
Q 008780 116 GEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 116 g~~~~~~~~~~~ip~~~~l~~~v~l~~~ 143 (554)
|..+ ..+++.|.+..+
T Consensus 82 G~~~------------~~~v~~v~~~~f 97 (151)
T 1ix5_A 82 GNRN------------EMLIQKIPRDAF 97 (151)
T ss_dssp CSCC------------STTBCCEETHHH
T ss_pred CCCC------------ccEEEEEEHHHc
Confidence 9763 466777766666
No 72
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=3.8e-14 Score=125.71 Aligned_cols=116 Identities=14% Similarity=0.231 Sum_probs=104.0
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|..++..|+|++|+..|++++. ++|.+ ..+++++|.|+..+|+|++|+.+|++++.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYD-----------SRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4577788999999999999999999999999 88888 67899999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
++|+++.+++++|.++..+|++++|+..|+++++++|++ +........+..
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~ 134 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX-PEFXELSTRVSS 134 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-CcchHHHHHHHH
Confidence 999999999999999999999999999999999999987 333333333333
No 73
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.57 E-value=1.4e-14 Score=132.73 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=72.3
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||+|+++|++++.||++|++|+. ..|+.|.+|.+++++||+++|.+|++|+++.|+|||+++||..+
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~----- 72 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD----- 72 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT-----TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC-----
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC-----CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC-----
Confidence 68999999999999889999999984 46999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCceEEEEEEEee
Q 008780 125 PSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~ 143 (554)
..+++.|.+..+
T Consensus 73 -------~~lV~~vp~~~f 84 (196)
T 2kfw_A 73 -------ENLVQRVPKDVF 84 (196)
T ss_dssp -------TTTCEEECGGGC
T ss_pred -------hhhEEEEEHHHC
Confidence 456666655444
No 74
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.57 E-value=4.7e-14 Score=123.86 Aligned_cols=120 Identities=15% Similarity=0.241 Sum_probs=106.5
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..+++.|+|++|+..|++++. .+|.+ ..+++++|.||.++++|++|+.++++++
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYD-----------ARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567788999999999999999999999999 88888 7799999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
.++|+++.+++++|.++..+|++++|+..|+++++++|++ +........+...+.
T Consensus 80 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 80 LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ-PAHEALAARAGAMLE 134 (142)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-GGGHHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 444444444444443
No 75
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.56 E-value=2.9e-14 Score=126.77 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=100.2
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
....+...|+.+++.|+|++|+..|++|++ ++|.+ ..+|+++|.||.+++++++|+.++++++++
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERD-----------PKAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 455667899999999999999999999999 88988 789999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRD-FEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~-~~~al~l~P~~~~~~~~~l~~l 525 (554)
+|+++.+|+++|.++..++++++|... +++|++++|+| +.+...+..+
T Consensus 95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~l 143 (150)
T 4ga2_A 95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQL 143 (150)
T ss_dssp CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHH
Confidence 999999999999999999999887765 59999999998 5565554444
No 76
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.55 E-value=5.1e-15 Score=124.13 Aligned_cols=84 Identities=21% Similarity=0.196 Sum_probs=74.3
Q ss_pred CCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEe-CCccCCCCCCCCCCCc
Q 008780 167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT-SQYLTPSPLMPVVEGC 245 (554)
Q Consensus 167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~-~~~~~g~~~~~~ip~~ 245 (554)
..++.||.|+++|++++ ||++|+++. ++|+.|.+|.++++|||+++|.+|++|++++|.|+ |+. ||... .++
T Consensus 28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~-~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~----~~g 100 (113)
T 1hxv_A 28 KKLANGDIAIIDFTGIV-DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKE----LQS 100 (113)
T ss_dssp -CCCSSEEEEEEEEEEE-TTEECSTTC-CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSG----GGS
T ss_pred CCCCCCCEEEEEEEEEE-CCEEcccCC-ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCC----CCC
Confidence 46889999999999998 999999884 78999999999999999999999999999999996 554 88653 256
Q ss_pred ceEEEEEeeeee
Q 008780 246 EEVHFEVELVHL 257 (554)
Q Consensus 246 ~~l~~~v~l~~~ 257 (554)
++++|+|+|+++
T Consensus 101 ~~l~F~V~l~~V 112 (113)
T 1hxv_A 101 KPVTFEVVLKAI 112 (113)
T ss_dssp CCCEEEEEECCB
T ss_pred CEEEEEEEEEEE
Confidence 899999999886
No 77
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.55 E-value=2.8e-14 Score=128.25 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=65.9
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~ 119 (554)
++.||.|+++|++++.+|++|++|+. ..|+.|.+|.+++++||+++|.+|++|+++.|.|||+.+||..+
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~ 72 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCS-----SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccC-----CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence 67899999999999889999999984 46999999999999999999999999999999999999999874
No 78
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.55 E-value=5.4e-14 Score=121.76 Aligned_cols=118 Identities=26% Similarity=0.433 Sum_probs=107.6
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++++. ..|.+ ..+++++|.|+..+++|++|+.++++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 367889999999999999999999999999 78877 679999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-----SEPDATAALSKLKKQRQ 530 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~-----~~~~~~~~l~~l~~~~~ 530 (554)
+|+++.+++++|.++..+|++++|+..|+++++++|+ + ..+...+..+..+..
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALRIAKKKRW 130 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 4 466767776665554
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.53 E-value=8.7e-14 Score=154.49 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=111.8
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.+.+..+.++|+.+.++|+|++|+..|++|++ ++|.+ ..+++|+|.+|.++|++++|+.++++|+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~-----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF-----------AAAHSNLASVLQQQGKLQEALMHYKEAI 70 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45788899999999999999999999999999 88887 6788888888888888888888888888
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+++|+++.+|+++|.++..+|++++|++.|++|++++|++ ..+...|..+...+...+++. ..|++.+...|+
T Consensus 71 ~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi--~~~~~Al~l~P~ 143 (723)
T 4gyw_A 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAI--ASYRTALKLKPD 143 (723)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCSC
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCC
Confidence 8888888888888888888888888888888888888887 566666666666555344444 567776665543
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.53 E-value=1.7e-13 Score=128.71 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=102.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHH-----HhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-----FVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~-----~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (554)
+..+..+|..++..|+|++|+..|++++. ++|.+.+-.-. .......+++++|.||.++|+|++|+..+++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56778899999999999999999999999 67655210000 0011122334499999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 473 al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+++++|+++.+++++|.++..+|++++|+.+|+++++++|++ ..+...+..+.
T Consensus 80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~ 132 (208)
T 3urz_A 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLGNYY 132 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 66666666554
No 81
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.52 E-value=2e-14 Score=134.86 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=65.8
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccC---------CCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCcc
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSE---------YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY 115 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~---------~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~y 115 (554)
++.||.|.+||++++ ||++|++|+.. .+..+.|+.|.+|.+++++||+.||.+|++|+++.|.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY 80 (231)
T 3prb_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (231)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence 578999999999999 99999999851 00113699999999999999999999999999999999999999
Q ss_pred CCCC
Q 008780 116 GEDD 119 (554)
Q Consensus 116 g~~~ 119 (554)
|..+
T Consensus 81 Ge~~ 84 (231)
T 3prb_A 81 GKRD 84 (231)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9865
No 82
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.52 E-value=3.7e-14 Score=132.97 Aligned_cols=69 Identities=22% Similarity=0.144 Sum_probs=64.3
Q ss_pred CCCCceEEEEEEEEeCCCcEEEecCC--------------CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccC
Q 008780 169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT 234 (554)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~ 234 (554)
++.||.|++||++++ ||++|+|+.. ++|+.|.+|.|+++|||+++|.+|++|+++++.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY 80 (231)
T 3prb_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (231)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence 578999999999999 9999999864 3799999999999999999999999999999999999999
Q ss_pred CCCC
Q 008780 235 PSPL 238 (554)
Q Consensus 235 g~~~ 238 (554)
|..+
T Consensus 81 Ge~~ 84 (231)
T 3prb_A 81 GKRD 84 (231)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9743
No 83
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=1.4e-12 Score=116.18 Aligned_cols=119 Identities=27% Similarity=0.461 Sum_probs=108.6
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (554)
.....+.+..+...|..++..|+|.+|+..|++++. ..|.+ ..+++++|.|+..+++|++|+.++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~ 70 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDA 70 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356678899999999999999999999999999999 77776 678999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
.+++.++|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus 71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~ 124 (166)
T 1a17_A 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQEC 124 (166)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 4555444444
No 84
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=4.6e-13 Score=111.71 Aligned_cols=114 Identities=26% Similarity=0.461 Sum_probs=105.1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++++. ..|.+ ..++.++|.|+..+++|++|+..+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999 77776 678999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+|.+..+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHhh
Confidence 99999999999999999999999999999999999998 56666665554
No 85
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.50 E-value=7.4e-14 Score=124.75 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=72.8
Q ss_pred CCCCCceEEEEEEEEeCCCcEEEecCC-CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcc
Q 008780 168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE 246 (554)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~ 246 (554)
.++.||.|++||++++.||++|+|+.. ++|+.|.+|.++++|||+++|.+|++||+++|.|||+++||+.+ .
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~-------~ 96 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS-------P 96 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC-------G
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC-------h
Confidence 578999999999999999999999864 58999999999999999999999999999999999999999764 3
Q ss_pred eEEEEEeeeee
Q 008780 247 EVHFEVELVHL 257 (554)
Q Consensus 247 ~l~~~v~l~~~ 257 (554)
.++..|....|
T Consensus 97 ~lv~~vp~~~f 107 (169)
T 4dt4_A 97 DLIQYFSRREF 107 (169)
T ss_dssp GGEEEEEGGGG
T ss_pred HHEEEeCHHHC
Confidence 44555554444
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.50 E-value=3e-14 Score=126.64 Aligned_cols=111 Identities=11% Similarity=0.060 Sum_probs=96.4
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 483 (554)
.|..+..++++++|+..|++++. ..|.. ...++++|.+|+++++|++|+.+++++++++|+++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~----~~p~~-----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP----SPRQK-----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC----SHHHH-----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc----cCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 57888899999999999999988 54433 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 484 ~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|+.+|.++..+|++++|+..|++|++++|++ ..+...+..+.....
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999998 677777777665554
No 87
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.50 E-value=2.9e-13 Score=119.54 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=75.2
Q ss_pred CCCCCCceEEEEEEEEeC-CCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCc
Q 008780 167 ETPRAPYEVKAWISAKTG-DGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGC 245 (554)
Q Consensus 167 ~~~~~g~~V~v~y~~~~~-~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~ 245 (554)
+.++.||.|++||++++. ||++|+|+..++|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||..+
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------- 77 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------- 77 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC-------
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC-------
Confidence 567899999999999988 999999998779999999999999999999999999999999999999999763
Q ss_pred ceEEEEEeeeee
Q 008780 246 EEVHFEVELVHL 257 (554)
Q Consensus 246 ~~l~~~v~l~~~ 257 (554)
..+++.+....+
T Consensus 78 ~~~v~~v~~~~f 89 (151)
T 2kr7_A 78 SSYLQEVPRDQF 89 (151)
T ss_dssp SCEEEEEEGGGG
T ss_pred cceEEEEcHHHc
Confidence 346666666665
No 88
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.49 E-value=7.1e-13 Score=117.61 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=69.8
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||.|+++|+++ .||++|++|+ +.|.+|.+++++||+++|.+|++|+++.|.|||+.+||..
T Consensus 3 i~~gd~V~v~Y~g~-~dG~~fdss~---------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~------ 66 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ-VEGEVLDQGE---------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH------ 66 (158)
T ss_dssp CCTTEEEEEEEEEE-ETTEEEEEEE---------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC------
T ss_pred CCCCCEEEEEEEEE-ECCEEEEeeE---------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC------
Confidence 57899999999999 8999999774 7899999999999999999999999999999999999976
Q ss_pred CCCCCCCCceEEEEEEEee
Q 008780 125 PSTFPKDEELHFEIEMIDF 143 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~ 143 (554)
+..+++.|.+..+
T Consensus 67 ------~~~lv~~v~~~~f 79 (158)
T 3cgm_A 67 ------DPEGVQVVPLSAF 79 (158)
T ss_dssp ------CGGGEEEEEGGGS
T ss_pred ------CcceEEEEEHHHC
Confidence 4578888877666
No 89
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.47 E-value=2.4e-13 Score=116.12 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=91.5
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|..+++.|++++|+..|++++. .+|.+ ..+++++|.|+..+|++++|+..++++++++|+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 456889999999999999999999999 89988 789999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999999999999999986
No 90
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.47 E-value=4.5e-14 Score=124.98 Aligned_cols=71 Identities=21% Similarity=0.130 Sum_probs=65.5
Q ss_pred CCCCceEEEEEEEEeCCCcEEEecCC--------------CccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccC
Q 008780 169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT 234 (554)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~ 234 (554)
++.||.|++||++++ ||++|+|+.. ++|+.|.+|.++++|||+++|.+|++||+++|.|||+++|
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 678999999999999 9999999864 3799999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 008780 235 PSPLMP 240 (554)
Q Consensus 235 g~~~~~ 240 (554)
|+.++.
T Consensus 81 G~~~~~ 86 (157)
T 3pr9_A 81 GKRDPS 86 (157)
T ss_dssp CCCCGG
T ss_pred CCCChH
Confidence 986443
No 91
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.2e-12 Score=124.14 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=113.7
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCC-CChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p-~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
..+...|..++..|+|++|+..|+++++ +.| .+ ..+++++|.|+..+++|++|+.++++++.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLK----LTNNQD-----------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTTCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh----ccCCCC-----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999999 776 55 5688889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA-------TAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~-------~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
|+++.+++.+|.++..+|++++|+..|+++++++|++ ... ...+..+.......+++. ..|++.+...|.
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~--~~~~~al~~~p~ 149 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAE--ENYKHATDVTSK 149 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHTTSSCH
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHH--HHHHHHHhcCCC
Confidence 9999999999999999999999999999999999998 423 333444443333334444 788888877665
No 92
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.46 E-value=3.4e-12 Score=108.36 Aligned_cols=120 Identities=26% Similarity=0.388 Sum_probs=107.6
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (554)
......+..+...|..++..++|+.|+..|++++. ..|.+ ..++.++|.|+..++++++|+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPAN-----------AVYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhhchHHHHHHHH
Confidence 44566788999999999999999999999999999 67776 6789999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 472 ~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+++..+|.+..+++.+|.++..++++++|+..|+++++++|++ ..+...+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~ 125 (131)
T 2vyi_A 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 555555555544
No 93
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-12 Score=112.16 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=105.6
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
......+...|..++..++|++|+..|+++++ ..|.+ ..+++++|.|+..++++++|+.++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34577889999999999999999999999999 77776 6789999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+++|.+..+++++|.++..++++++|+..|+++++++|++ ..+...+..+..
T Consensus 78 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~ 129 (133)
T 2lni_A 78 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-KEAADGYQRCMM 129 (133)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-THHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 455555555543
No 94
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-12 Score=113.33 Aligned_cols=117 Identities=31% Similarity=0.491 Sum_probs=104.9
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|.+|+..|+++++ ..|.++ ....+++++|.||..+++|++|+.++++++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQ--------DQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccch--------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 467888999999999999999999999999 777531 23678999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+|.++.+++++|.++..++++++|+..|+++++++|++ ..++..+..+.
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 143 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-KVFQEALRNIS 143 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 56666665553
No 95
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.45 E-value=2.9e-13 Score=119.64 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=92.4
Q ss_pred hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCC
Q 008780 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC----------RKSIEACNKVLDANPA 479 (554)
Q Consensus 410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~----------~~A~~~~~~al~~~p~ 479 (554)
+.+.|++|+..|++|++ ++|.+ ..+++|+|.|+..++++ ++|+..|++||+++|+
T Consensus 14 r~~~feeA~~~~~~Ai~----l~P~~-----------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhHHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 45679999999999999 89998 78999999999999876 5999999999999999
Q ss_pred ChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 480 HVKGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~-----------~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
+..+|+++|.+|..+| +|++|+.+|++|++++|++ ...+..+....+..
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~-~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAP 138 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHhCH
Confidence 9999999999999985 8999999999999999998 56666665554443
No 96
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=9.3e-13 Score=124.48 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=77.7
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-----------cCHHHHHH
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----------GECRKSIE 468 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-----------~~~~~A~~ 468 (554)
.+...|..+++.|++++|+..|+++++ ++|.+ ..+++++|.++.++ |++++|+.
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVA----RTPRY-----------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence 344445555555555555555555555 44444 45666666666666 66666666
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008780 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 469 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~ 548 (554)
.++++++++|+++.+++.+|.++..+|++++|+..|++|++++ ++ ..+...+..+.......+.+. ..|++.+...
T Consensus 106 ~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~ 181 (217)
T 2pl2_A 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEAL--AQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHHH--HHHHHHHHHS
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhC
Confidence 6666666666666666666666666666666666666666666 44 455555555554444333333 5666665554
Q ss_pred cc
Q 008780 549 LG 550 (554)
Q Consensus 549 ~~ 550 (554)
|+
T Consensus 182 P~ 183 (217)
T 2pl2_A 182 PK 183 (217)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 97
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=2.1e-12 Score=121.95 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
...+++++|.++..+|++++|+..++++++++ +++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~ 194 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASA 194 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence 45689999999999999999999999999999 999999999999999999999999999999999998 5666666666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008780 526 KKQRQVKLKVRLENSLKG 543 (554)
Q Consensus 526 ~~~~~~~~~~~~~~~y~~ 543 (554)
.......+++. ..|++
T Consensus 195 ~~~~g~~~~A~--~~~~~ 210 (217)
T 2pl2_A 195 LLLKGKAEEAA--RAAAL 210 (217)
T ss_dssp HTC---------------
T ss_pred HHHccCHHHHH--HHHHH
Confidence 55554333333 44544
No 98
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.8e-12 Score=117.09 Aligned_cols=146 Identities=17% Similarity=0.255 Sum_probs=112.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHH-----------------------HHhhhHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHLNVA 454 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~-----------------------~~~~~~~~~~~nla 454 (554)
+..+.+.|+.++++|+|++|+..|++|++ ++|.+.+-.. ........++.++|
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK----ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 56778999999999999999999999999 7887643110 00111234667777
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008780 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLK 534 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (554)
.++...+++..|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHH
Confidence 788888888888888888888889999999999999999999999999999999999988 6677777777766664455
Q ss_pred HHHHHHHHhhcccccc
Q 008780 535 VRLENSLKGCLTRSLG 550 (554)
Q Consensus 535 ~~~~~~y~~~f~~~~~ 550 (554)
+. ..|++.+...|.
T Consensus 160 A~--~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AV--KYFKKALEKEEK 173 (184)
T ss_dssp HH--HHHHHHHHTTHH
T ss_pred HH--HHHHHHHhCCcc
Confidence 55 678887766553
No 99
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.43 E-value=2.1e-12 Score=110.28 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=100.8
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|..++..|+|++|+..|++++. ..|.+. ....+++++|.|+.++|+|++|+..+++++..+|+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLE----LYPNGV--------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCCc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 456789999999999999999999999 677652 11368999999999999999999999999999999
Q ss_pred C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 480 H---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 480 ~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+ +.+++++|.++..+|++++|+..|+++++..|++ ..+...+..+..
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~l~~ 121 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS-DAARVAQERLQS 121 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHH
Confidence 9 8999999999999999999999999999999998 555555555543
No 100
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=7.5e-13 Score=136.33 Aligned_cols=118 Identities=9% Similarity=0.019 Sum_probs=70.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLD 475 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al~ 475 (554)
.+..+...|..+.+.|++++|+..|++||. ++|.+ ..+|+++|.++..+++ +++|+.+++++|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~-----------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAAN-----------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccC-----------HHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 455566666666677777777777777776 66665 4555566666666664 6666666666666
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
++|++..+|+++|.++..+|++++|+.+|++|++++|+| ..++..+..+.....
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a~~~lg~~~~~~g 214 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFK 214 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHcC
Confidence 666666666666666666666666666666666666655 344444444444333
No 101
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=7.5e-13 Score=146.98 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=108.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+.++|+.+.+.|++++|+..|++|++ ++|.+ ..+|+|+|.+|..+|++++|+.++++|++++
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~-----------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTF-----------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999 89988 7899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|+++.+|+++|.+|..+|++++|+..|++|++++|++ ..+...|..+...+.
T Consensus 108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVC 159 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcc
Confidence 9999999999999999999999999999999999998 566666666655544
No 102
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.42 E-value=3e-12 Score=108.78 Aligned_cols=118 Identities=22% Similarity=0.371 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
+.+..+...|..++..|+|++|+..|++++. ..|.+ ..+++++|.|+..+++|++|+.++.+++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999 67776 67899999999999999999999999999
Q ss_pred hCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 476 ANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 476 ~~p~~-------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
++|.+ ..+++++|.++..+|++++|+..|+++++++|+ ..+...+..+.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHH
Confidence 99877 999999999999999999999999999999994 566767776665554
No 103
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.41 E-value=5.3e-13 Score=122.32 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=67.7
Q ss_pred CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCC
Q 008780 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240 (554)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~ 240 (554)
++.||.|+|+|++++.||++|+|+...+|++|.+|.++++|+|+++|.+|++|++++|.|||+.+||+..+.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~ 74 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN 74 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChh
Confidence 678999999999999899999999877999999999999999999999999999999999999999987543
No 104
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=99.41 E-value=2e-13 Score=120.65 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCCCceEEEEEEEEeCCCcEEEecC--------------CCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccC
Q 008780 169 PRAPYEVKAWISAKTGDGKLILSHR--------------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT 234 (554)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~--------------~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~ 234 (554)
++.||.|++||++++.||++|+|+. ..+|+.|.+|.++++|||+++|.+|++|+++++.|||+.+|
T Consensus 2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY 81 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81 (151)
T ss_dssp CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence 6789999999999988999999985 34799999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 008780 235 PSPLMP 240 (554)
Q Consensus 235 g~~~~~ 240 (554)
|+.++.
T Consensus 82 G~~~~~ 87 (151)
T 1ix5_A 82 GNRNEM 87 (151)
T ss_dssp CSCCST
T ss_pred CCCCcc
Confidence 987544
No 105
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=3.7e-12 Score=125.48 Aligned_cols=102 Identities=25% Similarity=0.443 Sum_probs=97.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..++.+|+.+++.|+|++|+..|++|+. ..|.+ ..+++|+|.||.++++|++|+.+++++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999 78887 7899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|+++++++++|.++..+|++++|+..|+++++++|++
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999865
No 106
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=3.8e-12 Score=131.04 Aligned_cols=116 Identities=8% Similarity=0.039 Sum_probs=107.0
Q ss_pred HHHHHHHhhhhhhhcCC-HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 397 EAEKIRVTGNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~-~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
.+..+..+|..+...|+ +++|+..|++|+. ++|.+ ..+|+++|.++.++|+|++|+.+|+++|+
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----l~P~~-----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKN-----------YQVWHHRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35677899999999997 9999999999999 89988 78999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
++|++..+|+++|.++..+|++++|+.+|+++++++|++ ..++..+..+...
T Consensus 195 ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~-~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 195 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-NSVWNQRYFVISN 246 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 6677777766555
No 107
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1e-11 Score=117.57 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=102.7
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
..+...|..++..|+|++|+..|++|++ ..|.+ ..++.++|.||..+++|++|+..++++++++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNL-----------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcch-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 4556699999999999999999999999 88876 67999999999999999999999999999999
Q ss_pred CCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHH
Q 008780 479 AHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLKKQRQ 530 (554)
Q Consensus 479 ~~~-------ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~~l~~l~~~~~ 530 (554)
++. .+|+++|.++..+|++++|+..|++|++++|+ + ..+...+..+.....
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLFYNNG 167 (228)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHHH
Confidence 999 77999999999999999999999999999998 6 455555555544433
No 108
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.36 E-value=2.2e-12 Score=137.04 Aligned_cols=117 Identities=26% Similarity=0.457 Sum_probs=107.0
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.+.+..+..+|+.+++.|+|++|+..|++|++ +.|.+ ..+++|+|.||.++++|++|+.++++|+
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35677788999999999999999999999999 78877 7899999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+++|+++.+++++|.++..+|++++|+..|++|++++|++ ..+...+..+..
T Consensus 68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~ 119 (477)
T 1wao_1 68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNK 119 (477)
T ss_dssp HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-TTHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 456666666533
No 109
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=2.1e-11 Score=111.20 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=90.7
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------------HHHhhhHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVA 454 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-----------------------~~~~~~~~~~~~nla 454 (554)
+..+...|..+++.|++++|+..+.+++. ..|.+..-. .........++.++|
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg 114 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVV----LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLG 114 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 44566777777777777777777777776 444432100 001111256789999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+|.++|+|++|+..++++++++|.++.+|+++|.+|..+|++++|+..|++|++++|++
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 115 LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999999999999999999999999999999975
No 110
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.35 E-value=4e-11 Score=100.70 Aligned_cols=113 Identities=27% Similarity=0.490 Sum_probs=102.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..+++++|+..|++++. ..|.+ ..+++++|.++...+++++|+..+++++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 56778899999999999999999999999 66766 5689999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
|.+..+++.+|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 121 (125)
T 1na0_A 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 121 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 55665555544
No 111
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.35 E-value=3.4e-12 Score=113.23 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=70.0
Q ss_pred CCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcceE
Q 008780 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV 248 (554)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l 248 (554)
++.||.|+++|+++ .||++|+|+. +.|.+|.++++|||+++|.+|++|++++|.|||+.+||.. +..+
T Consensus 3 i~~gd~V~v~Y~g~-~dG~~fdss~----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------~~~l 70 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ-VEGEVLDQGE----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------DPEG 70 (158)
T ss_dssp CCTTEEEEEEEEEE-ETTEEEEEEE----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------CGGG
T ss_pred CCCCCEEEEEEEEE-ECCEEEEeeE----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------Ccce
Confidence 57899999999999 9999999886 8999999999999999999999999999999999999976 3456
Q ss_pred EEEEeeeeee
Q 008780 249 HFEVELVHLI 258 (554)
Q Consensus 249 ~~~v~l~~~~ 258 (554)
++.|.+..+.
T Consensus 71 v~~v~~~~f~ 80 (158)
T 3cgm_A 71 VQVVPLSAFP 80 (158)
T ss_dssp EEEEEGGGSC
T ss_pred EEEEEHHHCC
Confidence 7777777664
No 112
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.34 E-value=1.5e-12 Score=110.11 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=80.7
Q ss_pred hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008780 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (554)
Q Consensus 410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~ 489 (554)
..|+|++|+..|++|++ +.+.++ ....+++++|.||.++|+|++|+.+++++++++|+++.+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~----~~~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA----SGLQGK--------DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHS----SCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH----cCCCCc--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 36889999999999999 532221 126789999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 490 AYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 490 a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++..+|++++|+..|+++++++|++
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999998
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=1.9e-11 Score=114.62 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=92.0
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 482 (554)
..|..+++.|+|++|+..|+++++ ++|.+ ..+++++|.++..+|++++|+.+++++++++|+++.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ----KAPNN-----------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 399999999999999999999999 89988 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-----------------------------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 483 GLYRRGMAYMAL-----------------------------------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 483 a~~~~g~a~~~l-----------------------------------~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+|+++|.+++.. ++|++|+.+|++|++++|++ .+...|..+.
T Consensus 124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~l~~i~ 200 (208)
T 3urz_A 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH--HHHHHHHHHH
Confidence 998888776443 46788888888888888864 3444455543
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.33 E-value=1.6e-11 Score=114.56 Aligned_cols=134 Identities=13% Similarity=0.168 Sum_probs=107.6
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|..++..|+|++|+..|++++. + + ..+++++|.||.++|+|++|+.++++++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~-~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD------P-H-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C-C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C-C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566788999999999999999999998752 2 2 56899999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE---------------PDATAALSKLKKQRQVKLKVRLENS 540 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~---------------~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (554)
++|.++.+++++|.++..+|++++|+..|++++++.|.+. ..+...+..+.......+++. ..
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~ 143 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE--EQ 143 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH--HH
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH--HH
Confidence 9999999999999999999999999999999999888762 145555555555544344444 66
Q ss_pred HHhhccccc
Q 008780 541 LKGCLTRSL 549 (554)
Q Consensus 541 y~~~f~~~~ 549 (554)
|++.+...|
T Consensus 144 ~~~al~~~p 152 (213)
T 1hh8_A 144 LALATSMKS 152 (213)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHcCc
Confidence 777766554
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.33 E-value=8.9e-13 Score=117.27 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...++++|.+++++|+|++|+..+++++.++|+++.+|+.+|.++..+|+|++|+..|++|++++|++ ..++..+..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998 66777777777
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
......+++. ..|++.+...|+
T Consensus 115 ~~lg~~~eA~--~~~~~al~l~~~ 136 (151)
T 3gyz_A 115 LRLKAPLKAK--ECFELVIQHSND 136 (151)
T ss_dssp HHTTCHHHHH--HHHHHHHHHCCC
T ss_pred HHcCCHHHHH--HHHHHHHHhCCC
Confidence 7666455555 678877665543
No 116
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.32 E-value=1.3e-11 Score=101.90 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=94.2
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|..++..|+|++|+..|+++++ ..|.+ ..++.++|.++..+++|++|+.+++++++++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQ----LDPEE-----------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 456789999999999999999999999 77776 678999999999999999999999999999999
Q ss_pred --ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008780 480 --HVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 480 --~~ka~~~~g~a~~~l-~~~~~A~~~~~~al~l~P~~ 514 (554)
+..+++.+|.++..+ |++++|+..|++++..+|++
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999999975
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.30 E-value=1.3e-11 Score=106.13 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+..+.|+|.+|++.|+|++|+.+++++++++|.++.+|+++|.++..+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998 67777777777
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
..+...+++. ..|++.+...|+
T Consensus 92 ~~~~~~~~A~--~~~~~al~l~P~ 113 (126)
T 4gco_A 92 VAMREWSKAQ--RAYEDALQVDPS 113 (126)
T ss_dssp HHTTCHHHHH--HHHHHHHHHCTT
T ss_pred HHCCCHHHHH--HHHHHHHHHCcC
Confidence 7666445555 778888776664
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=5.9e-11 Score=100.80 Aligned_cols=134 Identities=22% Similarity=0.346 Sum_probs=111.9
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
..+...|..++..|++++|+..|++++. ..|.+ ..++.++|.++...+++++|+..+++++..+|
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHH----cCCcc-----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 3466789999999999999999999998 66665 56889999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
.+..+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+.......+++. ..|++++...|.
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~--~~~~~~~~~~~~ 135 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAI--EYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHH--HHHHHHHHHSTT
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHH--HHHHHHHccCCC
Confidence 999999999999999999999999999999999987 555555555554444334444 677777665543
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.29 E-value=3.3e-11 Score=109.26 Aligned_cols=114 Identities=11% Similarity=0.194 Sum_probs=101.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHH-HHHccCH--HHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC-LLKLGEC--RKSIEACNKVL 474 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~-~~kl~~~--~~A~~~~~~al 474 (554)
+..+...|..++..|+|++|+..|++++. +.|.+ ..++.++|.+ +...+++ ++|+..+++++
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQ----LRGEN-----------AELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCSC-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 46788999999999999999999999999 77776 6789999999 8899999 99999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
+++|++..+++.+|.++..+|++++|+..|+++++++|++ ......+..+.+
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~i~~ 160 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR-INRTQLVESINM 160 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-SCHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 444444444443
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.27 E-value=6.3e-11 Score=128.56 Aligned_cols=136 Identities=13% Similarity=0.109 Sum_probs=119.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|+|++|+..|++|++ +.|.+ ..+++++|.+|..+|++++|+.+++++++++
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-----------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999 88887 6799999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccccccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR---QVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~---~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
|+++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.... ...+++. ..|++.+...|..
T Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~g~~~~A~--~~~~~al~~~p~~ 161 (568)
T 2vsy_A 88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-PYITAQLLNWRRRLCDWRALDVLS--AQVRAAVAQGVGA 161 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCTTHHHHH--HHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhccccHHHHH--HHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999998 66777777776666 4334444 6777777666543
No 121
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.26 E-value=1.7e-10 Score=111.56 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=99.7
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|..++..|++++|+..|++++. +.|.+ ..++.++|.++..+|+|++|+.+++++++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4577888999999999999999999999999 78877 67899999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
++|.++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999999999983
No 122
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=1.5e-10 Score=104.32 Aligned_cols=135 Identities=18% Similarity=0.209 Sum_probs=113.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+...|..++..|++++|+..|++++. ..|.+ ..++.++|.++..++++++|+..+++++..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLA----DAPDN-----------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677889999999999999999999998 66766 6789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.......+++. ..|++++...|+
T Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~--~~~~~~~~~~~~ 176 (186)
T 3as5_A 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEAL--PHFKKANELDEG 176 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHHC
T ss_pred cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHH--HHHHHHHHcCCC
Confidence 9999999999999999999999999999999999987 566666666666555334444 567666655443
No 123
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=4.8e-11 Score=115.58 Aligned_cols=106 Identities=11% Similarity=0.200 Sum_probs=96.4
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..+++.|+|++|+..|++++. ..|.++ ....+++++|.||+++|+|++|+..+++++..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFT----YGRTHE--------WAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGG----GCSCST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCc--------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 367788999999999999999999999999 777652 22578999999999999999999999999999
Q ss_pred CCCC---hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCC
Q 008780 477 NPAH---VKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 477 ~p~~---~ka~~~~g~a~~~--------l~~~~~A~~~~~~al~l~P~~ 514 (554)
+|++ ..+++++|.++.. +|++++|+..|+++++++|++
T Consensus 82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 8854 6799999999999 999999999999999999987
No 124
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=2e-10 Score=111.17 Aligned_cols=140 Identities=18% Similarity=0.202 Sum_probs=114.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH--------ccCHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--------LGECRKSIEA 469 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k--------l~~~~~A~~~ 469 (554)
...+...|..+++.|+|++|+..|++++. ..|.+.. ...+++++|.|+.+ ++++++|+..
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQ----IYQIDPR--------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH----HCCCCch--------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 56788999999999999999999999999 7776522 25689999999999 9999999999
Q ss_pred HHHHHhhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHH-
Q 008780 470 CNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQR- 529 (554)
Q Consensus 470 ~~~al~~~p~~~ka~-----------------~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l~~l~~~~- 529 (554)
+++++..+|++..+. +.+|.++..+|+|++|+..|+++++.+|++. ..+...+..+....
T Consensus 120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 999999999987776 9999999999999999999999999999862 33444555544433
Q ss_pred ---------HHHHHHHHHHHHHhhccccccc
Q 008780 530 ---------QVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 530 ---------~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
...+++. ..|+++....|+.
T Consensus 200 ~~~~~~~~~~~~~~A~--~~~~~~~~~~p~~ 228 (261)
T 3qky_A 200 EQSVRARQPERYRRAV--ELYERLLQIFPDS 228 (261)
T ss_dssp HTSCGGGHHHHHHHHH--HHHHHHHHHCTTC
T ss_pred ccchhhcccchHHHHH--HHHHHHHHHCCCC
Confidence 2233444 7888887776654
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.24 E-value=2.6e-11 Score=109.94 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=108.9
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
+...++.++..++|++|+..|++++. ..|.+ ..+++++|.+|..+++|++|+.++.+++.++|.+
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 77 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHH----HCCSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 34567778899999999999999999 78877 6799999999999999999999999999999999
Q ss_pred hHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 481 VKGLYRRGMA-YMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 481 ~ka~~~~g~a-~~~l~~~--~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+.+++.+|.+ +...+++ ++|+..|+++++++|++ ..+...+..+.......+++. ..|++++...|.
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~ 147 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAI--ELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHH--HHHHHHHhhCCC
Confidence 9999999999 8899999 99999999999999998 567777777666655444444 678887776554
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=9.5e-11 Score=124.34 Aligned_cols=134 Identities=12% Similarity=0.103 Sum_probs=118.0
Q ss_pred HHHHHHHhhhhhhhcCCH-HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 397 EAEKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~-~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
.+..+..+|..++..++| ++|+..|++|++ ++|.+ ..+++++|.||.++|+|++|+.+++++++
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK----LEPEL-----------VEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 366788999999999999 999999999999 88887 67999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--------HHHHHHHHH
Q 008780 476 ANPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR--------QVKLKVRLE 538 (554)
Q Consensus 476 ~~p~~~ka~~~~g~a~~~l---------~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~--------~~~~~~~~~ 538 (554)
++|+ ..+++++|.++..+ |++++|+..|++|++++|++ ..++..+..+.... ...+++.
T Consensus 166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~-- 241 (474)
T 4abn_A 166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSLYFNTGQNPKISQQAL-- 241 (474)
T ss_dssp TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHH--
T ss_pred hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhhccccchHHHHH--
Confidence 9998 79999999999999 99999999999999999998 67777777777666 5344444
Q ss_pred HHHHhhccccc
Q 008780 539 NSLKGCLTRSL 549 (554)
Q Consensus 539 ~~y~~~f~~~~ 549 (554)
..|++.+...|
T Consensus 242 ~~~~~al~~~p 252 (474)
T 4abn_A 242 SAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHHCG
T ss_pred HHHHHHHHhCC
Confidence 67777766554
No 127
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=1e-10 Score=110.80 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=94.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+..+|..+++.|+|++|+..|++++. ..|.+.. ...+++++|.||.++++|++|+..++++++.+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDN----RYPFGPY--------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTSTT--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999999 6776521 24689999999999999999999999999999
Q ss_pred CCChH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCh
Q 008780 478 PAHVK---GLYRRGMAYMA------------------LGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 478 p~~~k---a~~~~g~a~~~------------------l~~~~~A~~~~~~al~l~P~~~ 515 (554)
|++.. ++|++|.++.. ++++++|+..|+++++.+|++.
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 99876 89999999986 5799999999999999999983
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.22 E-value=1.7e-11 Score=108.42 Aligned_cols=112 Identities=9% Similarity=0.019 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 008780 419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498 (554)
Q Consensus 419 ~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~ 498 (554)
..|++++. ++|.+ ...++++|.+++..|+|++|+..+++++.++|.++.+|+.+|.++..+|+|+
T Consensus 8 ~~~~~al~----~~p~~-----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 8 GTIAMLNE----ISSDT-----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp CSHHHHTT----CCHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHc----CCHhh-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence 34677777 66654 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008780 499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 499 ~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~ 548 (554)
+|+..|++|+.++|++ ..+...+..+.......+++. ..|++.....
T Consensus 73 ~A~~~~~~al~l~p~~-~~~~~~lg~~~~~~g~~~~A~--~~~~~al~~~ 119 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXE-PRFPFHAAECLLQXGELAEAE--SGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-chHHHHHHHHHHHcCCHHHHH--HHHHHHHHHC
Confidence 9999999999999998 566666666665555344444 5666665543
No 129
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=6.4e-12 Score=104.12 Aligned_cols=95 Identities=29% Similarity=0.427 Sum_probs=86.1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++|++ +.|.+ ..+++|+|.|+.++|+|++|+.++++++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999 78877 678999999999999999999999999999
Q ss_pred CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEM 506 (554)
Q Consensus 477 ~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~ 506 (554)
+|++ ..+++++|.++..+|++++|+..|++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999 99999999999999998888776654
No 130
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.5e-10 Score=110.48 Aligned_cols=111 Identities=25% Similarity=0.404 Sum_probs=87.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++++. ..|.+ ..+++++|.|+.+++++++|+.+++++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 455667788888888888888888888888 66665 567888888888888888888888888888
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALS 523 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~------P~~~~~~~~~l~ 523 (554)
+|+++.+++.+|.++..+|++++|+..|+++++++ |++ ..+...+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~-~~~~~~l~ 254 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYY 254 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch-HHHHHHHH
Confidence 88888888888888888888888888888888888 765 44444443
No 131
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.21 E-value=3.5e-10 Score=113.36 Aligned_cols=121 Identities=22% Similarity=0.400 Sum_probs=106.7
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
.......|..+++.|++++|+..|++++. ..|.+. .....++.++|.|+.++|++++|+..++++++.+
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVA-------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSSH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCch-------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33455679999999999999999999999 677652 2234678899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|+++.+++.+|.++..+|++++|+..|+++++++|++ ..++..|..+...++
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLK 354 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 677888887776665
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.21 E-value=1.3e-10 Score=108.31 Aligned_cols=102 Identities=9% Similarity=0.094 Sum_probs=96.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|+|++|+..|++|+. +.|.+ ..+++++|.||..+++|++|+.++++++++.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999999 77776 6789999999999999999999999999998
Q ss_pred CCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~----------------ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|.+. .+++++|.++..+|++++|+..|+++++++|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8877 999999999999999999999999999999976
No 133
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=1.7e-10 Score=104.03 Aligned_cols=135 Identities=17% Similarity=0.147 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|++++|+..|++++. ..|.+ ..++.++|.++..++++++|+..+++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD----ADAFD-----------VDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC----TTSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 467788999999999999999999999988 67766 678999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
+|.+..+++.+|.++...+++++|+..|+++++++|.+ ..+...+..+.......+++. ..|++++...+
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~--~~~~~~~~~~~ 141 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAI--DSFKIALGLRP 141 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHH--HHHHHHHhcCc
Confidence 99999999999999999999999999999999999988 556666665555444333333 56666655443
No 134
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=1.2e-10 Score=123.46 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=105.0
Q ss_pred HHHHHhhhhhhhc---------CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc--------c
Q 008780 399 EKIRVTGNRLFKE---------GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------G 461 (554)
Q Consensus 399 ~~~~~~G~~~~~~---------g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl--------~ 461 (554)
..+...|..++.. |+|++|+..|++|++ +.|.+ ..+++++|.+|..+ +
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLD-----------GRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHHHhhccccc
Confidence 5677888999999 999999999999999 88887 67999999999999 9
Q ss_pred CHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 462 ECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 462 ~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
+|++|+.+++++++++| .++.+|+++|.++..+|++++|+..|++|++++|++ ..++..+..+.....
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999999999999998 566666665555444
No 135
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.20 E-value=3.3e-11 Score=125.19 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=79.4
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||.|.+||+++ .||+.|++++ +.|+.|.+|.|++++||+.+|.||++|+++.|.||++.+||..+.+
T Consensus 158 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~la--- 227 (432)
T 1w26_A 158 VEAEDRVTIDFTGS-VDGEEFEGGK------ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLK--- 227 (432)
T ss_dssp CCTTCEEEECEEEE-SSSCBCSSCC------CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTTS---
T ss_pred CCCCCEEEEEEEEe-eCCeEccCCC------ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCCC---
Confidence 79999999999999 5999999876 3689999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCceEEEEEEEeeeccc
Q 008780 125 PSTFPKDEELHFEIEMIDFAKAK 147 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~ 147 (554)
|.+++|+|+|.++....
T Consensus 228 ------g~~~~F~V~v~~v~~~~ 244 (432)
T 1w26_A 228 ------GKAAKFAINLKKVEERE 244 (432)
T ss_dssp ------SCEEEEEEECCEECCEE
T ss_pred ------CceEEEEEEEEEEeccC
Confidence 78999999999997644
No 136
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=4e-11 Score=133.03 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=109.5
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
..+..+|..++..|+|++|+..|++|++ ++|.+ ..+++++|.+|.++|+|++|+.++++|++++|
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 498 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWR-----------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFP 498 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999 78887 67889999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+++.+++++|.++..+|++++ +..|++|++++|++ ..+...+..+...+...+++. ..|++.....|.
T Consensus 499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~--~~~~~al~l~P~ 566 (681)
T 2pzi_A 499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-ISAAFGLARARSAEGDRVGAV--RTLDEVPPTSRH 566 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHTSCTTSTT
T ss_pred CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHHHH--HHHHhhcccCcc
Confidence 999999999999999999999 99999999999987 566666666665555444444 677777665543
No 137
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.19 E-value=4.4e-10 Score=106.47 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=55.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|++++|+..|++++. ..|.+ ..++.++|.++..++++++|+..++++++.+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALE----LDSSA-----------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCcc-----------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 34555666666667777777777777666 44444 3444445555555555555555555555555
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 5555555555555555555555555555555555444
No 138
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.19 E-value=2.6e-10 Score=108.11 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=113.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+...|..++..|++++|+..|+++++ ..|.+ ..++.++|.++.+++++++|+..+++++..+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR----AGMEN-----------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCCS-----------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 45667889999999999999999999999 67766 5688999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++. ..|++++...|+
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~--~~~~~~~~~~p~ 225 (243)
T 2q7f_A 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKAL--EMLDKAIDIQPD 225 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHH--HHHHHHHHHCTT
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHH--HHHHHHHccCcc
Confidence 9999999999999999999999999999999999987 566666666665555333444 567766655443
No 139
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.3e-10 Score=108.17 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=114.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH---------------HHHHhhhHHHHHHHHHHHHHHccC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE---------------GKVFVGKRNLLHLNVAACLLKLGE 462 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee---------------~~~~~~~~~~~~~nla~~~~kl~~ 462 (554)
+..+...|..++..|++++|+..|++++. +.|..+-. ..........++.++|.++..+++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT----EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 67788999999999999999999999999 44431100 000112235689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLK 542 (554)
Q Consensus 463 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~ 542 (554)
|++|+.++++++..+|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++. ..|+
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~--~~~~ 231 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASAL--ETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHH--HHHH
Confidence 9999999999999999999999999999999999999999999999999998 566666666666555333443 5666
Q ss_pred hhcccc
Q 008780 543 GCLTRS 548 (554)
Q Consensus 543 ~~f~~~ 548 (554)
+.+...
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 655443
No 140
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.18 E-value=1.7e-10 Score=111.57 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH-HH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS-KL 525 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~-~l 525 (554)
..++.++|.|+..++++++|+.+++++++++|.++.+++.+|.++..+|++++|+..|+++++++|.+ ..+...+. .+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~ 152 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-PKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-HHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777766 44444444 33
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 008780 526 KKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 526 ~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
.... ..+++. ..|+++....|
T Consensus 153 ~~~~-~~~~A~--~~~~~a~~~~p 173 (272)
T 3u4t_A 153 YYNK-EYVKAD--SSFVKVLELKP 173 (272)
T ss_dssp HHTT-CHHHHH--HHHHHHHHHST
T ss_pred HHHH-HHHHHH--HHHHHHHHhCc
Confidence 2222 222232 45555554444
No 141
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.8e-10 Score=120.53 Aligned_cols=117 Identities=25% Similarity=0.386 Sum_probs=104.9
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
+.+.+..+..+|+.+++.|+|.+|+..|++++. ..| + ..++.++|.|+.++|+|++|+..++++
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p-~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALE----LKE-D-----------PVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCC-C-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCc-c-----------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 456789999999999999999999999999999 666 3 578999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
++++|++..+++.+|.++..+|++++|+..|++++.++|.+.......+..+.
T Consensus 66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999977544444444433
No 142
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.17 E-value=2.8e-10 Score=114.15 Aligned_cols=110 Identities=20% Similarity=0.387 Sum_probs=101.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|+.++..|+|++|+..|++++. ..|.+ ..+++++|.|+..+|+|++|+..+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIAL 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 356788999999999999999999999999 78877 679999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK---SSEPDATAAL 522 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P---~~~~~~~~~l 522 (554)
+|++..+++.+|.++..+|++++|+..|+++++++| ++ ..+...+
T Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l 114 (359)
T 3ieg_A 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQL 114 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHH
T ss_pred CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHH
Confidence 999999999999999999999999999999999999 65 4455444
No 143
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.17 E-value=1.7e-10 Score=117.00 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=104.5
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCC--ChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ--DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~--~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~ 480 (554)
..|..+...|++++|+..|++++. +.|. + ..+++++|.+|.++|++++|+..++++++++|++
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAH----QNGDMID-----------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHH----HSCSSCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHH----hCcCccC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 347888899999999999999999 7776 4 6789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
+.+|+.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++. ..|++++...|
T Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~al~~~~ 312 (365)
T 4eqf_A 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGISCINLGAYREAV--SNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCCHHHHH--HHHHHHHHhCc
Confidence 9999999999999999999999999999999998 667777777666665333444 56666665443
No 144
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.17 E-value=5.5e-10 Score=104.19 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780 447 NLLHLNVAACLLKL-GECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (554)
Q Consensus 447 ~~~~~nla~~~~kl-~~~~~A~~~~~~al~--~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~ 523 (554)
..++.++|.++..+ +++++|+..+++++. .+|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la 154 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF-PPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHH
Confidence 34566666666666 666666666666666 445556666666666666666666666666666666665 44444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 008780 524 KLKKQRQVKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 524 ~l~~~~~~~~~~~~~~~y~~~f~~~ 548 (554)
.+.......+++. ..|++++...
T Consensus 155 ~~~~~~~~~~~A~--~~~~~~~~~~ 177 (225)
T 2vq2_A 155 RTKMLAGQLGDAD--YYFKKYQSRV 177 (225)
T ss_dssp HHHHHHTCHHHHH--HHHHHHHHHH
T ss_pred HHHHHcCCHHHHH--HHHHHHHHhC
Confidence 4444443223333 4455554433
No 145
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.17 E-value=6.4e-10 Score=106.27 Aligned_cols=144 Identities=13% Similarity=0.056 Sum_probs=79.8
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh----------------HH-HHH--------hhhHHHHHHHH
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------------EG-KVF--------VGKRNLLHLNV 453 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e----------------e~-~~~--------~~~~~~~~~nl 453 (554)
..+...|..++..|++++|+..|++++. ..|.+.. +. ..+ ......++.++
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALA----SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence 3455566666666666666666666666 3443311 00 000 01123456666
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008780 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL 533 (554)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (554)
|.++.++|++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHH
Confidence 6666666666666666666666666666666666666666666666666666666666665 344444444444333222
Q ss_pred HHHHHHHHHhhccccc
Q 008780 534 KVRLENSLKGCLTRSL 549 (554)
Q Consensus 534 ~~~~~~~y~~~f~~~~ 549 (554)
++. ..|+++....|
T Consensus 227 ~A~--~~~~~~~~~~p 240 (252)
T 2ho1_A 227 TAA--SYGLQLKRLYP 240 (252)
T ss_dssp HHH--HHHHHHHHHCT
T ss_pred HHH--HHHHHHHHHCC
Confidence 332 44555544433
No 146
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.16 E-value=4.6e-10 Score=114.96 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
..++.++|.+|.++|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++ ..+...+..+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 315 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666665 34444444443
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
......+++. ..|+++....|
T Consensus 316 ~~~g~~~~A~--~~~~~al~~~p 336 (388)
T 1w3b_A 316 REQGNIEEAV--RLYRKALEVFP 336 (388)
T ss_dssp HTTTCHHHHH--HHHHHHTTSCT
T ss_pred HHcCCHHHHH--HHHHHHHhcCC
Confidence 3333222333 45555554433
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.15 E-value=6.9e-10 Score=94.35 Aligned_cols=99 Identities=15% Similarity=0.076 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
.++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|++|++++|++ ..+...|..+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999998 6677777777766
Q ss_pred HHHHHHHHHHHHHHhhcccccc
Q 008780 529 RQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 529 ~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
....+++. ..|++.+...|+
T Consensus 98 ~g~~~~A~--~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAAL--ASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHH--HHHHHHHC----
T ss_pred cCCHHHHH--HHHHHHHHhCcC
Confidence 66555555 788888877664
No 148
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.14 E-value=4.6e-10 Score=115.00 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=112.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..+++.|++++|+..|+++++ +.|.+ ..+++++|.++.++|++++|+..++++++++
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE----LQPHF-----------PDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCSSC-----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44566788888888888888888888888 77776 5689999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
|.++.+++.+|.++...|++++|+..|+++++++|++ ..+...+..+.......+++. ..|++++...|.
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~a~~~~p~ 371 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEAL--MHYKEAIRISPT 371 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHH--HHHHHHHTTCTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHH--HHHHHHHhhCCC
Confidence 9999999999999999999999999999999999998 566666666655554334444 678777766554
No 149
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.14 E-value=9.5e-10 Score=102.54 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK-SSEPDATAALSKL 525 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P-~~~~~~~~~l~~l 525 (554)
..++.++|.++.+++++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++++| .+ ......+..+
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~ 191 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGWKI 191 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999998 76 4555555555
Q ss_pred HHHHH
Q 008780 526 KKQRQ 530 (554)
Q Consensus 526 ~~~~~ 530 (554)
.....
T Consensus 192 ~~~~~ 196 (225)
T 2vq2_A 192 AKALG 196 (225)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 44444
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.14 E-value=9.1e-11 Score=102.60 Aligned_cols=100 Identities=9% Similarity=0.017 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...++++|.++++.|+|++|+..+++++..+|.++.+|+.+|.++..+|+|++|+..|++|+.++|++ ..+...+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-PRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999999999999999999998 56666666666
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
......+++. ..|++.+...|
T Consensus 97 ~~~g~~~~A~--~~~~~al~~~p 117 (142)
T 2xcb_A 97 LQLGDLDGAE--SGFYSARALAA 117 (142)
T ss_dssp HHTTCHHHHH--HHHHHHHHHHH
T ss_pred HHcCCHHHHH--HHHHHHHHhCC
Confidence 5555334444 56666655443
No 151
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.13 E-value=3.7e-10 Score=114.53 Aligned_cols=102 Identities=23% Similarity=0.409 Sum_probs=96.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|++++|+..|++++. ..|.+ ..+++++|.+|.++|++++|+.+++++++++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT----VRPED-----------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45677889999999999999999999999 78877 6789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999874
No 152
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.13 E-value=1.1e-09 Score=114.14 Aligned_cols=120 Identities=23% Similarity=0.419 Sum_probs=105.2
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
......|..+++.|++++|+..|++++. +.|.+.+ ....++.++|.++.++|++++|+..+++++.++|
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMK----TEPSIAE-------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCCSSHH-------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3345669999999999999999999999 7777522 2346899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
+++.+|+.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-QQIREGLEKAQRLLK 377 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998 677777776655543
No 153
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.13 E-value=5.5e-10 Score=106.73 Aligned_cols=126 Identities=13% Similarity=0.238 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH----------------H-HHH------hhhHHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVF------VGKRNLLHLNV 453 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee----------------~-~~~------~~~~~~~~~nl 453 (554)
.+..+...|..++..|++++|+..|++++. ..|.+..- . ..+ ......++.++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALE----IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 378889999999999999999999999998 56655210 0 000 01122345555
Q ss_pred HHHHHHccCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 454 AACLLKLGECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~--~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
|.++..++++++|+..+++++. .+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+..
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~ 186 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ-PSVALEMADLLY 186 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHH
Confidence 5555555555555555555555 455555555555555555555555555555555555554 333434444333
No 154
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.13 E-value=3.5e-10 Score=120.66 Aligned_cols=112 Identities=29% Similarity=0.487 Sum_probs=100.8
Q ss_pred CCCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHH
Q 008780 387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (554)
Q Consensus 387 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (554)
..++..+..+.+..+..+|+.+++.|+|++|+..|++++. ..|.+ ..+++++|.||.++|+|++|
T Consensus 14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A 78 (537)
T 3fp2_A 14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNE-----------PVFYSNISACYISTGDLEKV 78 (537)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHH
Confidence 3567788888999999999999999999999999999999 88887 78999999999999999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 467 ~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+..|+++++++|+++.+++.+|.++..+|++++|+..|+ ++.++|+.
T Consensus 79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~ 125 (537)
T 3fp2_A 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDF 125 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence 999999999999999999999999999999999999996 99999876
No 155
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.13 E-value=7e-10 Score=92.88 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 008780 416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495 (554)
Q Consensus 416 ~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~ 495 (554)
.|+..|+++++ ..|.+ ..+++++|.+|..+|+|++|+.++++++.++|.+..+|+.+|.++..+|
T Consensus 3 ~a~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 3 AITERLEAMLA----QGTDN-----------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CHHHHHHHHHT----TTCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 57889999999 88887 6799999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 008780 496 EFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 496 ~~~~A~~~~~~al~l~P~ 513 (554)
++++|+..|+++++++|.
T Consensus 68 ~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 68 DRAGARQAWESGLAAAQS 85 (115)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 999999999999999884
No 156
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.12 E-value=1e-09 Score=114.44 Aligned_cols=105 Identities=21% Similarity=0.398 Sum_probs=99.8
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..+++.|+|.+|+..|++++. ..|.+ ..+++++|.|+..+|++++|+..+++++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999 77877 7899999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999986
No 157
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.11 E-value=4.4e-10 Score=111.30 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=112.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+...|..++..|++++|+..|++++. ..|.+ ..++.++|.++..++++++|+..++++++.+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPDD-----------AQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45677889999999999999999999999 77776 6789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----------EPDATAALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~-----------~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
|.+..+++.+|.++..+|++++|+..|+++++++|++ ...+...+..+.......+++. ..|++.+.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~l~ 314 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE--LTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH--HHTTCCSH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH--HHHHHHHH
Confidence 9999999999999999999999999999999999982 2556666666655555334444 55655554
Q ss_pred ccc
Q 008780 547 RSL 549 (554)
Q Consensus 547 ~~~ 549 (554)
..+
T Consensus 315 ~~~ 317 (327)
T 3cv0_A 315 PFA 317 (327)
T ss_dssp HHH
T ss_pred hcc
Confidence 443
No 158
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.11 E-value=3.5e-10 Score=114.42 Aligned_cols=118 Identities=19% Similarity=0.297 Sum_probs=97.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|++++|+..|++++. +.|.+ ..+++++|.++.++|++++|+..++++++++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45667788888889999999999999988 67766 5688899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE----------PDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~----------~~~~~~l~~l~~~~~ 530 (554)
|.++.+++.+|.++..+|++++|+..|+++++++|++. ..++..+..+.....
T Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999888761 345555665555554
No 159
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.5e-10 Score=128.42 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=101.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+..+|..++..|+|++|+..|++|++ ++|.+ ..+++|+|.||.++|+|++ +.+|++|++++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~-----------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLD----TFPGE-----------LAPKLALAATAELAGNTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTC-----------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence 45678899999999999999999999999 88988 6799999999999999999 99999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
|+++.+|+++|.++..+|++++|+.+|++|++++|++ ..++..+..+
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~ 577 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVT 577 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHH
Confidence 9999999999999999999999999999999999987 5555544444
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.11 E-value=3.5e-10 Score=97.10 Aligned_cols=100 Identities=11% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP------DATA 520 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~------~~~~ 520 (554)
+.++.|+|.++++.|+|++|+.++++||+++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++.. .+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999886521 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008780 521 ALSKLKKQRQVKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~ 548 (554)
.+..+...+...+++. ..|++.+...
T Consensus 88 ~lg~~~~~~~~~~~A~--~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAV--QWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHH--HHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHH--HHHHHHHhhC
Confidence 2333333333333443 5677665543
No 161
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=2.8e-10 Score=103.36 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=91.8
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH------------
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI------------ 467 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~------------ 467 (554)
.+...|..++..|++++|+..|++++. .+|.+ ..+++++|.++..+|++++|+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 72 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD----ELQSR-----------GDVKLAKADCLLETKQFELAQELLATIPLEYQD 72 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH----HHHTS-----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC
Confidence 355778888888888888888888887 66666 455666666666666655554
Q ss_pred ----------------------HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHH
Q 008780 468 ----------------------EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSK 524 (554)
Q Consensus 468 ----------------------~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~l~~ 524 (554)
..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++. ..++..+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 445555666788999999999999999999999999999999998742 346666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 008780 525 LKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 525 l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
+.......+.+. ..|++.+.
T Consensus 153 ~~~~~g~~~~A~--~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGNAIA--SKYRRQLY 172 (176)
T ss_dssp HHHHHCSSCHHH--HHHHHHHH
T ss_pred HHHHhCCCCcHH--HHHHHHHH
Confidence 655554222233 45665543
No 162
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=1.4e-09 Score=102.97 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=110.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH------------------
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK------------------ 459 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k------------------ 459 (554)
...+...|..+++.|+|++|+..|+++++ ..|.+.. ...+++++|.|+.+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~P~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 108 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR----LNPTHPN--------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRD 108 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHHC--------------C
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence 45678899999999999999999999999 7887632 13467788888876
Q ss_pred ccCHHHHHHHHHHHHhhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHH
Q 008780 460 LGECRKSIEACNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATA 520 (554)
Q Consensus 460 l~~~~~A~~~~~~al~~~p~~~ka~-----------------~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~--~~~~ 520 (554)
++++++|+..++++++.+|++..++ +.+|.++...|++++|+..|+++++..|++.. .+..
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 5799999999999999999998665 67899999999999999999999999999832 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008780 521 ALSKLKKQRQVKLKVRLENSLKGCLTRSLGK 551 (554)
Q Consensus 521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~~ 551 (554)
.+..+..++...+.+. ..|+.+....|..
T Consensus 189 ~l~~~~~~~g~~~~A~--~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAE--KVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHTTCHHHHH--HHHHHHHHCCSCC
T ss_pred HHHHHHHHcCCcHHHH--HHHHHHHhhCCCc
Confidence 4444444444444444 7788887776654
No 163
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.3e-09 Score=108.06 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=93.2
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN------ 477 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~------ 477 (554)
.|..++..|++++|+..|++++. ..|.+ ..++.++|.++..+++|++|+..+++++.+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALS----IAPED-----------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 44444444444444444444444 34433 5678888999999999999999999998876
Q ss_pred ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 478 ---PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 478 ---p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++. ..|++.+...|+
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~ 302 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN-ASTYSAIGYIHSLMGNFENAV--DYFHTALGLRRD 302 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCHHHHH--HHHHTTTTTCSC
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc-hHHHHHHHHHHHHhccHHHHH--HHHHHHHccCCC
Confidence 6778889999999999999999999999999998887 566666776666655444444 678877766554
No 164
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.10 E-value=6.9e-11 Score=121.07 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=79.3
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||.|.+||+++ .||+.|+++. +.|+.|.+|.|++++||+.+|.||++|+++.|.||+...||..+++
T Consensus 161 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~la--- 230 (392)
T 1t11_A 161 AENGKRVSIDFVGS-IDGVEFEGGK------AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLK--- 230 (392)
T ss_dssp CCTTCEEEEEEEEE-SSSSCCTTCE------EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTTS---
T ss_pred CCCCCEEEEEEEEE-ECCEEccCCC------ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCCC---
Confidence 78999999999999 5999999775 3699999999999999999999999999999999877889876653
Q ss_pred CCCCCCCCceEEEEEEEeeecccccc
Q 008780 125 PSTFPKDEELHFEIEMIDFAKAKIIA 150 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~~~~ 150 (554)
|.+++|+|+|.++.....+.
T Consensus 231 ------Gk~~~F~V~v~~i~~~~lpe 250 (392)
T 1t11_A 231 ------GKAAKFAIKVNKVEARELPE 250 (392)
T ss_dssp ------SCEEEECCCEEEEEEEECCC
T ss_pred ------CCeEEEEEEEEEEEcCCCCC
Confidence 89999999999998654333
No 165
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=1.7e-09 Score=91.57 Aligned_cols=102 Identities=27% Similarity=0.495 Sum_probs=93.7
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+...|..++..+++++|+..|++++. ..|.+ ..++.++|.++..++++++|+..+++++...
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34566788999999999999999999998 66665 5688999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|.+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus 100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999863
No 166
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.08 E-value=9e-10 Score=106.43 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=99.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|++++|+..|+++++ ..|.+ ..++.++|.+|..+|+|++|+.+++++++++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVD----RDTTR-----------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 45678899999999999999999999999 77776 5789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
|.++.+++.+|..++..+++++|+..|+++++++|++ ..+...+..+...
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAA 188 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence 9999999999955555569999999999999999998 4555445544443
No 167
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.08 E-value=1.3e-09 Score=110.28 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=96.2
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
..+..+|..+++.|+|.+|+..|++++. ..|.+ ..+++++|.|+.++|++++|+..++++++++|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 129 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKP 129 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence 3456889999999999999999999999 88877 67899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
.++.+++.+|.++..+|++++|+..|++++.++|++.
T Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 9999999999999999999999999999999999873
No 168
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.08 E-value=1.9e-09 Score=106.64 Aligned_cols=113 Identities=20% Similarity=0.247 Sum_probs=67.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-------------------HHHh------hhHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------------KVFV------GKRNLLHLN 452 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-------------------~~~~------~~~~~~~~n 452 (554)
...+...|..+.+.|++++|+..|+++++ ..|.+.... ..+. .....++++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQD----QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34566677788888888888888888877 555441000 0000 001235566
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCC
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE-AQRDFEMMMKVDKSS 514 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~-A~~~~~~al~l~P~~ 514 (554)
+|.|+.++|+|++|+..++++++++|+++.+++++|.++..+|++++ |...++++++++|++
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 66666666666666666666666666666666666666666666654 345556666666665
No 169
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.3e-09 Score=92.76 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...+.++|.++++.++|++|+..++++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++ ..+...+..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999998 66776777666
Q ss_pred HHHHHHHHHHHHHHHHhhcccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~ 548 (554)
......+++. ..|++.+...
T Consensus 83 ~~~~~~~~A~--~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASAL--ETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHH--HHHHHHHHHH
T ss_pred HHHhCHHHHH--HHHHHHHHhC
Confidence 6655334444 5666665544
No 170
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=5.7e-10 Score=110.05 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH------
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC------ 470 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~------ 470 (554)
....+...|..+...|++++|+..|++++. .+|.+ ..+++++|.++..+|++++|+..+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQN-----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSC-----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcc-----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 346678999999999999999999999999 88988 567788888888888777766554
Q ss_pred ----------------------------HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHH
Q 008780 471 ----------------------------NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAA 521 (554)
Q Consensus 471 ----------------------------~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~~ 521 (554)
+++++.+|+++.+++.+|.++...|++++|+..|.++++++|++. ..++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 445677899999999999999999999999999999999999862 346666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 522 LSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
|..+.......+.+. ..|++.+.
T Consensus 261 l~~~~~~~g~~~~a~--~~~r~al~ 283 (287)
T 3qou_A 261 FQEILAALGTGDALA--SXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTCHHH--HHHHHHHH
T ss_pred HHHHHHHcCCCCcHH--HHHHHHHH
Confidence 666655554222333 45655543
No 171
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.1e-09 Score=108.23 Aligned_cols=143 Identities=10% Similarity=0.042 Sum_probs=104.2
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIEACNKVL 474 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~al 474 (554)
..+..+.+.|+.+...|+|++|+.+|++|+.+..... + ......++.|+|.+|..+ +++++|+.++++|+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--Q-------FRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3467788999999999999999999999998543321 1 111256889999999995 99999999999999
Q ss_pred hhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780 475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD------ATAALSKLKKQRQVKLKVRLENSLK 542 (554)
Q Consensus 475 ~~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~------~~~~l~~l~~~~~~~~~~~~~~~y~ 542 (554)
++.|.+ ..++.++|.++..+|+|++|+..|++++++.|++... +...+..+.........+. ..|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~--~~~~ 223 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA--RTLQ 223 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH--HHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH--HHHH
Confidence 998754 5689999999999999999999999999999876321 1222333333333333333 5666
Q ss_pred hhccccc
Q 008780 543 GCLTRSL 549 (554)
Q Consensus 543 ~~f~~~~ 549 (554)
+.....|
T Consensus 224 ~al~l~p 230 (292)
T 1qqe_A 224 EGQSEDP 230 (292)
T ss_dssp GGGCC--
T ss_pred HHHhhCC
Confidence 6655443
No 172
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.07 E-value=1.1e-09 Score=105.77 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=107.6
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k 482 (554)
..+..+...++|++|+..|+++++ ..+.++ .....+++++|.++..+|+|++|+..+++++.++|.++.
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 78 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILA----SRALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 78 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHT----SSCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred ceeeccCccchHHHHHHHHHHHHh----cccccC-------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence 345566677999999999999998 433331 123678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++. ..|++++...|
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~--~~~~~a~~~~~ 142 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQ--DDLLAFYQDDP 142 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc-cHHHHHHHHHHHHhccHHHHH--HHHHHHHHhCC
Confidence 99999999999999999999999999999988 566666666665555334444 56776665444
No 173
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.07 E-value=3.5e-10 Score=117.42 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=78.1
Q ss_pred CCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcc
Q 008780 167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE 246 (554)
Q Consensus 167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~ 246 (554)
..++.||.|++||+++ .||+.|+++. ++|+.|.+|.|+++|||+++|.||++|++++|.+|+..+||... .+++
T Consensus 156 ~~~~~gD~V~i~y~g~-~dG~~fd~~~-~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~----lag~ 229 (432)
T 1w26_A 156 GAVEAEDRVTIDFTGS-VDGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN----LKGK 229 (432)
T ss_dssp SCCCTTCEEEECEEEE-SSSCBCSSCC-CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTT----TSSC
T ss_pred CCCCCCCEEEEEEEEe-eCCeEccCCC-ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCC----CCCc
Confidence 5688999999999998 5999999876 78999999999999999999999999999999999999999653 2568
Q ss_pred eEEEEEeeeeee
Q 008780 247 EVHFEVELVHLI 258 (554)
Q Consensus 247 ~l~~~v~l~~~~ 258 (554)
+++|+|+|+++.
T Consensus 230 ~~~F~V~v~~v~ 241 (432)
T 1w26_A 230 AAKFAINLKKVE 241 (432)
T ss_dssp EEEEEEECCEEC
T ss_pred eEEEEEEEEEEe
Confidence 999999999995
No 174
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.05 E-value=1.9e-09 Score=106.85 Aligned_cols=144 Identities=9% Similarity=0.026 Sum_probs=93.2
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------H------HHhhhHHHHHHHHHHH
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------K------VFVGKRNLLHLNVAAC 456 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~-----------------~------~~~~~~~~~~~nla~~ 456 (554)
.+...|..++..|+|++|+..|++++. ..|.+.... . ........+++++|.+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVME----KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 345667777777888888888888777 555442100 0 0001124467777777
Q ss_pred HHHcc-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008780 457 LLKLG-ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKV 535 (554)
Q Consensus 457 ~~kl~-~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (554)
+..++ ++++|+.++++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-HLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhHHHH
Confidence 77777 77778888888887777777778888888888888888888888888777776 34444455554444433334
Q ss_pred HHHHHHHhhcccccc
Q 008780 536 RLENSLKGCLTRSLG 550 (554)
Q Consensus 536 ~~~~~y~~~f~~~~~ 550 (554)
. ..|++++...|.
T Consensus 179 ~--~~~~~al~~~~~ 191 (330)
T 3hym_B 179 E--RFFSQALSIAPE 191 (330)
T ss_dssp H--HHHHHHHTTCTT
T ss_pred H--HHHHHHHHhCCC
Confidence 3 566666665543
No 175
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.05 E-value=1.6e-09 Score=96.93 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...++++|.++++.++|++|+.+++++++++|+++.+|+++|.++..+|+|++|+.+|+++++++|++ ..+...+..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998 66777777776
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
......+++. ..|++.+...|+
T Consensus 90 ~~~g~~~~A~--~~~~~al~~~p~ 111 (164)
T 3sz7_A 90 FDMADYKGAK--EAYEKGIEAEGN 111 (164)
T ss_dssp HHTTCHHHHH--HHHHHHHHHHSS
T ss_pred HHccCHHHHH--HHHHHHHHhCCC
Confidence 6665444444 677777665544
No 176
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=1.7e-09 Score=106.71 Aligned_cols=145 Identities=8% Similarity=0.072 Sum_probs=106.7
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
.-+.+..+...|+.+...|+|++|+..|.+|+....... + ......++.|+|.||.++|+|++|+.++++|
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--N-------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--C-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334455566667888899999999999999999644332 1 1122678999999999999999999999999
Q ss_pred HhhCCCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780 474 LDANPAH------VKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSSE-----PDATAALSKLKKQRQVKLKVRLENSL 541 (554)
Q Consensus 474 l~~~p~~------~ka~~~~g~a~~~l-~~~~~A~~~~~~al~l~P~~~-----~~~~~~l~~l~~~~~~~~~~~~~~~y 541 (554)
+++.+.. +.++.++|.+|... |++++|+..|++|+++.|.+. ..+...+..+...+...+++. ..|
T Consensus 104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~--~~~ 181 (292)
T 1qqe_A 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS--DIY 181 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH--HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH--HHH
Confidence 9998654 67899999999995 999999999999999987531 122333344444333334444 567
Q ss_pred Hhhccccc
Q 008780 542 KGCLTRSL 549 (554)
Q Consensus 542 ~~~f~~~~ 549 (554)
++.....+
T Consensus 182 ~~al~~~~ 189 (292)
T 1qqe_A 182 SKLIKSSM 189 (292)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHh
Confidence 76665443
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.02 E-value=8.2e-09 Score=109.20 Aligned_cols=127 Identities=10% Similarity=0.038 Sum_probs=103.0
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (554)
..+.++.+....+.+..+..+|+|++|+..|+++|+.... +.+.+. .....++|||.+|..+|+|++|+.+
T Consensus 302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL--------YVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH--------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4456667778888888899999999999999999997655 344442 2467899999999999999999999
Q ss_pred HHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHH
Q 008780 470 CNKVLDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLK 526 (554)
Q Consensus 470 ~~~al~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~~~~~l~~l~ 526 (554)
+.++|++. |.-+.++.++|.+|..+|+|++|+..|++|+++ -|++ +.+...+..+.
T Consensus 374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~ 442 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRM 442 (490)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Confidence 99999762 444678999999999999999999999999985 6776 44444444333
No 178
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=2.8e-09 Score=102.89 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=109.8
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|..++..|+|++|+..|++++.........+ ......++.++|.+|..++++++|+.++.+++.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4577788999999999999999999999999654432211 122367899999999999999999999999999
Q ss_pred h--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008780 476 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--------DKSSEPDATAALSKLKKQRQVKLKVRLEN 539 (554)
Q Consensus 476 ~--------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--------~P~~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (554)
+ +|....+++++|.++..+|++++|+..|++++++ +|.. ..+...+..+.......+++. .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~--~ 190 (283)
T 3edt_B 114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV-AKTKNNLASCYLKQGKYQDAE--T 190 (283)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHHHHHHTCHHHHH--H
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHH--H
Confidence 8 5778999999999999999999999999999998 4432 345555555555554333333 4
Q ss_pred HHHhhcc
Q 008780 540 SLKGCLT 546 (554)
Q Consensus 540 ~y~~~f~ 546 (554)
.|.+++.
T Consensus 191 ~~~~~l~ 197 (283)
T 3edt_B 191 LYKEILT 197 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 179
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=1.4e-09 Score=117.91 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
.|++++|+..|+++++ ..|.+ ..+++++|.++..+++|++|+..++++++++|++..+++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR----HRPQD-----------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66 (568)
T ss_dssp -----------------------CC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4789999999999999 78877 67999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 491 ~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+..+|++++|+..|+++++++|++ ..+...+..+.......+++. ..|++.+...|+
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~ 123 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEH-PGIALWLGHALEDAGQAEAAA--AAYTRAHQLLPE 123 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCTT
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCC
Confidence 999999999999999999999998 667777777766665444444 667777665543
No 180
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.01 E-value=7.9e-09 Score=102.08 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=61.3
Q ss_pred HccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHH
Q 008780 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRL 537 (554)
Q Consensus 459 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~ 537 (554)
..+++++|+..++++++.+|+++.+|+.+|.++..+|++++|...|++|++++|++ .++...+..+..... ..+...
T Consensus 178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~- 255 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTN- 255 (291)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHH-
T ss_pred CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHH-
Confidence 34788888888888888888888888888888888888888888888888888887 455544444433333 222222
Q ss_pred HHHHHhhccccc
Q 008780 538 ENSLKGCLTRSL 549 (554)
Q Consensus 538 ~~~y~~~f~~~~ 549 (554)
..++++....|
T Consensus 256 -~~~~~~~~~~P 266 (291)
T 3mkr_A 256 -RYLSQLKDAHR 266 (291)
T ss_dssp -HHHHHHHHHCT
T ss_pred -HHHHHHHHhCC
Confidence 44555554443
No 181
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.00 E-value=4.6e-10 Score=91.10 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=42.9
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL-LHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~-~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 481 (554)
++|..+++.|+|++|+..|+++++ ..|.+ .. +++++|.||..+++|++|+.+++++++++|++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ----TEPVG-----------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----HCSST-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 344445555555555555555555 44443 33 455555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
.++++ +.+.+|+..|++++.++|+
T Consensus 70 ~~~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 70 ALQAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred HHHHH--------HHHHHHHHHHHHHhccCcc
Confidence 44433 3344444444444444443
No 182
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.98 E-value=3.9e-09 Score=112.56 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=103.5
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCCh---------------hHH-HHH------hhhHHHHHHHH
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------------EEG-KVF------VGKRNLLHLNV 453 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~---------------ee~-~~~------~~~~~~~~~nl 453 (554)
..+..+...|..++..|++++|+..|++++. ..|... ++. ..+ ......++.++
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 316 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESIN----LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 3455566666666666666666666666665 333200 000 000 11125688999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008780 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL 533 (554)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (554)
|.++..+++|++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 556666666665555333
Q ss_pred HHHHHHHHHhhcccc
Q 008780 534 KVRLENSLKGCLTRS 548 (554)
Q Consensus 534 ~~~~~~~y~~~f~~~ 548 (554)
++. ..|++++...
T Consensus 396 ~A~--~~~~~a~~~~ 408 (537)
T 3fp2_A 396 TAI--KQYDIAKRLE 408 (537)
T ss_dssp HHH--HHHHHHHHHH
T ss_pred HHH--HHHHHHHHcC
Confidence 444 5666665443
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.98 E-value=2.1e-09 Score=95.15 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA-------HVK-----GLYRRGMAYMALGEFEEAQRDFEMMMKV---- 510 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-------~~k-----a~~~~g~a~~~l~~~~~A~~~~~~al~l---- 510 (554)
+..+.++|.+++++|+|++|+..|++||+++|+ +.. +|+++|.++..+|+|++|+.+|.+||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008780 511 ---DKSSEPDAT----AALSKLKKQRQVKLKVRLENSLKGCLTRS 548 (554)
Q Consensus 511 ---~P~~~~~~~----~~l~~l~~~~~~~~~~~~~~~y~~~f~~~ 548 (554)
+|++ ..++ ..+..+...+...+.+. ..|++.+.-.
T Consensus 91 ~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl--~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQDE-GKLWISAVYSRALALDGLGRGAEAM--PEFKKVVEMI 132 (159)
T ss_dssp CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHH
T ss_pred ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHH--HHHHHHHhcC
Confidence 9986 4555 44444444443333443 5677765543
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.98 E-value=4e-09 Score=86.19 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
..+++++|.+|+++|+|++|+.+++++++++|+++.+|+++|.++..+|++++|+..|++++++.|.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 6789999999999999999999999999999999999999999999999999999999999999764
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.97 E-value=8.3e-09 Score=81.67 Aligned_cols=79 Identities=24% Similarity=0.446 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
..+++++|.++..+++|++|+.++++++.++|.+..+++++|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999998 55555555443
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.96 E-value=6.3e-09 Score=82.38 Aligned_cols=84 Identities=26% Similarity=0.412 Sum_probs=77.8
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..++|++|+..|++++. ..|.+ ..+++++|.++.+++++++|+.++++++++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 466788999999999999999999999999 77776 678999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcC
Q 008780 477 NPAHVKGLYRRGMAYMALG 495 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~ 495 (554)
+|++..+++++|.++..+|
T Consensus 73 ~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999998764
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.96 E-value=2e-09 Score=88.37 Aligned_cols=101 Identities=16% Similarity=0.125 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSK 524 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~~l~~ 524 (554)
..+++++|.++..+++|++|+..++++++++|.+..+++.+|.++..++++++|+..|+++++++|+ + ..+...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999 8 567777777
Q ss_pred HHHHH-HHHHHHHHHHHHHhhcccccc
Q 008780 525 LKKQR-QVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 525 l~~~~-~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+.... ...+++. +.|+++....|.
T Consensus 85 ~~~~~~~~~~~A~--~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAE--IAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHH--HHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHH--HHHHHHhhcccC
Confidence 76666 5334444 678888877664
No 188
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.96 E-value=5.6e-09 Score=103.29 Aligned_cols=126 Identities=10% Similarity=0.112 Sum_probs=107.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHH
Q 008780 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 486 (554)
Q Consensus 407 ~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~ 486 (554)
.+...|++++|+..|++++. ..|.+ ..++.++|.++.+++++++|+..+++++..+|.+..+++.
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 211 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALE----MNPND-----------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 58889999999999999999 67776 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++. ..|+++....|.
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~a~~~~~~ 272 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINPGY-VRVMYNMAVSYSNMSQYDLAA--KQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhccHHHHH--HHHHHHHHhCCc
Confidence 9999999999999999999999999998 566666766666555333444 566666554443
No 189
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.95 E-value=6.9e-09 Score=89.09 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...++++|.++++.++|++|+..+.+++.++|.++.+++++|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998 66777777766
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
......+++. ..|++.+...|+
T Consensus 88 ~~~~~~~~A~--~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAI--ANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHH--HHHHHHHHHHHH
T ss_pred HHHhhHHHHH--HHHHHHHHHChh
Confidence 6655334444 567776655443
No 190
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.94 E-value=4.1e-09 Score=110.72 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=95.7
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|+|++|+..|++|++.+....+... .......|.|+|.+|..+|+|++|+.++++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~------~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA------EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC------TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 455678999999999999999999999996544322110 01125688999999999999999999999999873
Q ss_pred --------CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 478 --------PAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 478 --------p~~~ka~~~~g~a~~~l~--~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+..+.++..+|.++..++ +|++|+.+|++|++++|++ ..+...+..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~~~~ 182 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLAIAS 182 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 456788999998887764 7999999999999999998 55555555443
No 191
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=8.8e-09 Score=99.29 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=94.5
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
...+..+...|..++..|++++|+..|++|+....... +.+ .....++.++|.+|..+|++++|+.+++++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH--------PDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567888999999999999999999999999654432 222 123678999999999999999999999999
Q ss_pred Hhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 474 LDA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 474 l~~--------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+.+ +|....+++.+|.++..+|++++|+..|++++++
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999 7778899999999999999999999999999987
No 192
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=7.7e-09 Score=90.30 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CChHHHHH
Q 008780 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDAN-P-AHVKGLYR 486 (554)
Q Consensus 412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al~~~-p-~~~ka~~~ 486 (554)
.....+.+.|.+++. ..+.+ ..+.+++|.|+.+.+ +..+++..++.+++.+ | .+..++|+
T Consensus 12 ~~l~~~~~~y~~e~~----~~~~~-----------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~ 76 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 76 (152)
T ss_dssp HHHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHH
Confidence 345667788888877 55655 678999999999988 6779999999999999 7 67999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
+|.+++.+++|++|+++++++|+++|+| ..+......+..+.
T Consensus 77 LAv~~~kl~~Y~~A~~y~~~lL~ieP~n-~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 77 LAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 55665555555444
No 193
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=7.1e-09 Score=102.22 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=92.9
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|..++..|+|++|+..|++|++.+..... + ......+++|+|.+|.++++|++|+.+++++++
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c-------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999987665422 2 223467999999999999999999999999998
Q ss_pred hCCCC------hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 008780 476 ANPAH------VKGLYRRGMAYMALG-EFEEAQRDFEMMMKVD 511 (554)
Q Consensus 476 ~~p~~------~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~ 511 (554)
+.+.. +.+++++|.++..+| .+++|+..|++|+.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 86543 889999999999999 5799999999999873
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.5e-08 Score=83.29 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
...++++|.+++.+++|++|+..++++++++|.++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 56889999999999999999999999999999999999999999999999999999999999999987
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.89 E-value=1.7e-08 Score=88.21 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..++..|+|++|+..|++++........ ......++.++|.++..++++++|+.++++++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788899999999999999999999999996543211 12235789999999999999999999999999
Q ss_pred hhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 475 ~~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
.+.+.. ..+++++|.++..+|++++|+..+++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 886543 6789999999999999999999999999874
No 196
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=4.2e-09 Score=103.76 Aligned_cols=108 Identities=14% Similarity=0.046 Sum_probs=86.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChh-----------------HHHHH------hhhHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----------------EGKVF------VGKRNLLHLNVA 454 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~e-----------------e~~~~------~~~~~~~~~nla 454 (554)
+..+...|..+...|++++|+..|++++. ..|.... ....+ ......+++++|
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la 226 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA 226 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence 45667888888899999999888887755 3331110 00000 111256899999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 455 ACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
.++..+|++++|+..+.++++.+|++ ..++.+++.++..+|+.++|...|++++.
T Consensus 227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999998 99999999999999999999999999986
No 197
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=5.3e-09 Score=103.99 Aligned_cols=106 Identities=10% Similarity=0.027 Sum_probs=56.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+.+.|+.+...|+|++|+.+|++|+.+..... +. .....++.|+|.+|.. ++|++|+.++++++++
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~-------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--TP-------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CH-------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CH-------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 345556666666677777777777777766432211 10 0113445555555555 5555555555555555
Q ss_pred CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 477 ~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
.+.. ..++.++|.++..+|+|++|+..|++++++.|
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4322 34555555555555555555555555555533
No 198
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=98.88 E-value=1.2e-09 Score=111.85 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcc
Q 008780 167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE 246 (554)
Q Consensus 167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~ 246 (554)
..++.||.|++||+++ .||+.|+++ .++|+.|.+|.|+++|||+++|.||++|++++|.++....|+... .+++
T Consensus 159 ~~~~~gD~V~i~y~g~-~dG~~fd~~-~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~----laGk 232 (392)
T 1t11_A 159 EAAENGKRVSIDFVGS-IDGVEFEGG-KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN----LKGK 232 (392)
T ss_dssp CCCCTTCEEEEEEEEE-SSSSCCTTC-EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----TSSC
T ss_pred CCCCCCCEEEEEEEEE-ECCEEccCC-CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC----CCCC
Confidence 4588999999999997 699999876 468999999999999999999999999999999997445566432 2578
Q ss_pred eEEEEEeeeeee
Q 008780 247 EVHFEVELVHLI 258 (554)
Q Consensus 247 ~l~~~v~l~~~~ 258 (554)
+++|+|+|+++.
T Consensus 233 ~~~F~V~v~~i~ 244 (392)
T 1t11_A 233 AAKFAIKVNKVE 244 (392)
T ss_dssp EEEECCCEEEEE
T ss_pred eEEEEEEEEEEE
Confidence 999999999995
No 199
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.88 E-value=2.2e-08 Score=108.34 Aligned_cols=146 Identities=13% Similarity=0.121 Sum_probs=96.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH----------------H-HHHhh------hHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVFVG------KRNLLHLNVA 454 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee----------------~-~~~~~------~~~~~~~nla 454 (554)
...+...|..+.+.|++++|+..|++++. ..|.+... . +.+.. ....++++++
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAAR----LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45667778888888888888888888777 45544210 0 00110 1144677777
Q ss_pred HHHHHccCHHHHHHHHHHHHhh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 455 ACLLKLGECRKSIEACNKVLDA------NPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~------~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
.+|.+.|++++|+..+++++++ +|++ ..+|+.+|.++...|++++|+..|+++++++|++ ..+...+..+..
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~ 561 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-ANVHTAIALVYL 561 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHH
Confidence 7888888888888888887777 5554 6777788888888888888888888888887776 556666666655
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q 008780 528 QRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 528 ~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
.....+++. ..|++++...|+
T Consensus 562 ~~g~~~~A~--~~~~~~l~~~p~ 582 (597)
T 2xpi_A 562 HKKIPGLAI--THLHESLAISPN 582 (597)
T ss_dssp HTTCHHHHH--HHHHHHHHHCTT
T ss_pred HhCCHHHHH--HHHHHHHhcCCC
Confidence 555333444 566666655543
No 200
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=2.9e-08 Score=81.98 Aligned_cols=101 Identities=10% Similarity=0.076 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...++++|.++...++|++|+..+++++..+|.++.+++.+|.++..++++++|+..++++++++|++ ..+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999998 56666666665
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
......+++. ..|++.....|.
T Consensus 83 ~~~~~~~~A~--~~~~~~~~~~~~ 104 (118)
T 1elw_A 83 EFLNRFEEAK--RTYEEGLKHEAN 104 (118)
T ss_dssp HHTTCHHHHH--HHHHHHHTTCTT
T ss_pred HHHhhHHHHH--HHHHHHHHcCCC
Confidence 5555344444 677777666553
No 201
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.86 E-value=9.4e-09 Score=91.60 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 508 (554)
+..+.++|.++++.|+|.+|+..|.+++.+ +|.++.+|+++|.+|+.+|+|++|+.++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 668899999999999999999999999999 78888999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 509 KVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 509 ~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+++|++ ..+...+..+...+...+.+. ..|++.+...|+
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~--~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAE--EDLKLLLRNHPA 129 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHCGG
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHH--HHHHHHHhcCCC
Confidence 999998 566666666665555344444 567766655543
No 202
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.5e-08 Score=107.07 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=50.4
Q ss_pred HHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780 449 LHLNVAACLLK---LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (554)
Q Consensus 449 ~~~nla~~~~k---l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l 522 (554)
+++++|.++.. +|++++|+..+++++..+|++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~ 489 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHH
Confidence 66677777777 7777777777777777777777777777777777777777777777777777765 4444444
No 203
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.85 E-value=3.6e-08 Score=106.62 Aligned_cols=132 Identities=17% Similarity=0.095 Sum_probs=110.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..+++.|++++|+..|+++++ +.|.+ ..++++++.+|.+.|++++|+..+++++..+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSST----MDPQF-----------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44567788899999999999999999998 67776 6689999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTR 547 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~ 547 (554)
|.+..+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+..+....+++. ..|++++..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~ 504 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFNKSDMQTAI--NHFQNALLL 504 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHH--HHHHHHHHh
Confidence 9999999999999999999999999999999999987 566666666655554333444 567666554
No 204
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=2.3e-08 Score=88.51 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=87.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|+|++|+..|++++. +.|.+ ..+++++|.|+..+|++++|+.++.++++++
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 45677899999999999999999999999 77776 6789999999999999999999999999999
Q ss_pred CCChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 008780 478 PAHVKGLYRRGMA--YMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 478 p~~~ka~~~~g~a--~~~l~~~~~A~~~~~~al~l 510 (554)
|.+..++..++.+ +...+++++|+..+.++..+
T Consensus 112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999988555544 88889999999999988765
No 205
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=2.3e-08 Score=102.75 Aligned_cols=105 Identities=16% Similarity=0.235 Sum_probs=95.2
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..++..|+|++|+..|++++. +.|.+. .....+++++|.+|..+|+|++|+.++++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQ----AGTEDL-------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----hcccCh-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678888999999999999999999999999 677662 2235689999999999999999999999999
Q ss_pred hh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 475 DA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 475 ~~------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
++ +|....+++.+|.++..+|++++|+..|++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 98 6778899999999999999999999999999998
No 206
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.84 E-value=2.7e-08 Score=101.84 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=95.8
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..++..|++..|+..|++|++........ ......+++++|.+|..+|+|++|+.++.+++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4467888899999999999999999999999965543211 12236788999999999999999999999999
Q ss_pred hhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCChHHHHHHHHHHHHHHH
Q 008780 475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----D-KSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 475 ~~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-----~-P~~~~~~~~~l~~l~~~~~ 530 (554)
++.+.. +.+++++|.++..+|++++|+..|++|+++ + |.. ..+...+..+.....
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g 278 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLG 278 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCC
Confidence 875433 358899999999999999999999999984 4 433 444444555444443
No 207
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.84 E-value=2.7e-08 Score=84.31 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALS 523 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~~l~ 523 (554)
.++++|.+++..++|++|+..+++++..+|++. .+++.+|.++..+|+|++|+..|+++++++|++. ..+...+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 578899999999999999999999999999998 8999999999999999999999999999999873 23445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 524 KLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 524 ~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
.+.......+++. ..|+++....|+
T Consensus 84 ~~~~~~g~~~~A~--~~~~~~~~~~p~ 108 (129)
T 2xev_A 84 LSQYGEGKNTEAQ--QTLQQVATQYPG 108 (129)
T ss_dssp HHHHHTTCHHHHH--HHHHHHHHHSTT
T ss_pred HHHHHcCCHHHHH--HHHHHHHHHCCC
Confidence 5555444444444 677777766554
No 208
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=2.4e-08 Score=84.66 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...++++|.++...++|++|+..+++++..+|.+..+++.+|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999997 56666666666
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
......+++. ..|++.+...|
T Consensus 95 ~~~~~~~~A~--~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAM--DVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHH--HHHHHHHHHCG
T ss_pred HHHhhHHHHH--HHHHHHHHhCC
Confidence 5555334444 56776665544
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.82 E-value=2.6e-08 Score=80.49 Aligned_cols=66 Identities=21% Similarity=0.463 Sum_probs=63.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
.+++|.++++.++|++|+..++++++.+|+++. +++.+|.++..+|++++|+..|+++++++|++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 367899999999999999999999999999999 999999999999999999999999999999983
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.82 E-value=5.4e-08 Score=101.26 Aligned_cols=125 Identities=9% Similarity=0.067 Sum_probs=98.9
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (554)
.+.+..+....+.+...-..|+|++|+..|+++|+.... +.+.+. .....+.|+|.+|..+|+|++|+.++
T Consensus 292 ~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~~ 363 (433)
T 3qww_A 292 RDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV--------YMLHMMYQAMGVCLYMQDWEGALKYG 363 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH--------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch--------HHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 334445555666666666789999999999999997654 445542 24678999999999999999999999
Q ss_pred HHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHH
Q 008780 471 NKVLDA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKL 525 (554)
Q Consensus 471 ~~al~~--------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~~~~~l~~l 525 (554)
+++|++ .|+-+..++++|.+|..+|+|++|+..|++|+++ -|++ +.+......|
T Consensus 364 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~l~~~l 430 (433)
T 3qww_A 364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH-PYISEIKQEI 430 (433)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHH
Confidence 999976 3445678999999999999999999999999996 6777 5555544444
No 211
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.82 E-value=4e-08 Score=97.54 Aligned_cols=136 Identities=10% Similarity=-0.021 Sum_probs=76.8
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH-------------------
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK------------------- 459 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k------------------- 459 (554)
..+...|..+.+.|++++|...|++|++ +.|.+.+ .++.+++.++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT----------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCTH----------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----ccccCcc----------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 4556677777778888888888888887 6665522 133333333333
Q ss_pred ----------------ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHH
Q 008780 460 ----------------LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV---DKSSEPDATA 520 (554)
Q Consensus 460 ----------------l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l---~P~~~~~~~~ 520 (554)
+|++++|+..++++++.+|+++.+|..++..+..+|++++|+..|++|+.. +|++...++.
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 456666666666666666666666666666666666666666666666663 3332234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 521 ALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
.+..+.......+.+. ..++++....|+
T Consensus 246 ~~~~~~~~~g~~~~a~--~~~~~a~~~~p~ 273 (308)
T 2ond_A 246 RFLAFESNIGDLASIL--KVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHSCHHHHH--HHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHH--HHHHHHHHHccc
Confidence 4444433333222333 556666555554
No 212
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.80 E-value=3.3e-08 Score=96.91 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=93.4
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
...+..+...|..++..|++++|+..|++++....... +.+ .....++.++|.++..++++++|+.+++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH--------PDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566788999999999999999999999999654331 111 123678999999999999999999999999
Q ss_pred Hhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 474 LDA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 474 l~~--------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+.+ +|....+++.+|.++..+|++++|+..|++++++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 998 77788899999999999999999999999999863
No 213
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.80 E-value=2.8e-08 Score=97.39 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=107.9
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..++..|++++|+..|++++.........+ ......++.++|.+|..++++++|+.++.+++
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 138 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34566788999999999999999999999999654431111 11236789999999999999999999999999
Q ss_pred hhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008780 475 DAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--------DKSSEPDATAALSKLKKQRQVKLKVRLE 538 (554)
Q Consensus 475 ~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--------~P~~~~~~~~~l~~l~~~~~~~~~~~~~ 538 (554)
.+. |....+++.+|.++..+|++++|+..|++++++ +|.. ..+...+..+.......+++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~-- 215 (311)
T 3nf1_A 139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQGKFKQAE-- 215 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH-HHHHHHHHHHHHHHTCHHHHH--
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHcCCHHHHH--
Confidence 884 667889999999999999999999999999998 4432 334445555554444333333
Q ss_pred HHHHhhcc
Q 008780 539 NSLKGCLT 546 (554)
Q Consensus 539 ~~y~~~f~ 546 (554)
..|++++.
T Consensus 216 ~~~~~al~ 223 (311)
T 3nf1_A 216 TLYKEILT 223 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 214
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.78 E-value=7.3e-08 Score=95.67 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=87.0
Q ss_pred HHHHhhhhhh-------hcCCH-------HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHH
Q 008780 400 KIRVTGNRLF-------KEGKF-------ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK 465 (554)
Q Consensus 400 ~~~~~G~~~~-------~~g~~-------~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~ 465 (554)
.+...|..+. +.|++ ++|+..|++|+.. +.|.+ ..+|.++|.++.++|++++
T Consensus 52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~---~~p~~-----------~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT---TTTTC-----------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHHH
Confidence 3445555544 45775 8999999999982 26766 6799999999999999999
Q ss_pred HHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 466 SIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 466 A~~~~~~al~~~p~~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|+..++++++++|.++. +|..+|.++...|++++|+..|++|++++|.+
T Consensus 118 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 118 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999987 99999999999999999999999999999876
No 215
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.76 E-value=6e-08 Score=95.60 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=93.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++++. ..|.+. .....++.++|.++..++++++|+.++++++.+
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCcccH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355778899999999999999999999999 667652 223578999999999999999999999999987
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 477 ------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
.+..+.+++.+|.++..+|++++|+..|++++++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 73 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5566889999999999999999999999999998653
No 216
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=4.4e-08 Score=96.44 Aligned_cols=124 Identities=12% Similarity=0.095 Sum_probs=94.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA- 476 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 476 (554)
+..+...|..++..++|++|+..|++|+. +.....+. .....+++++|.+|..+|+|++|+.+++++++.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~----~~~~~~~~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLN----QQLTGIDV-----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHH----TCCCCSCT-----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHH----HhcccccH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44555689999999999999999999999 33222111 123568999999999999999999999999953
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHHH
Q 008780 477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----EPDATAALSKLKKQRQ 530 (554)
Q Consensus 477 ------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~-----~~~~~~~l~~l~~~~~ 530 (554)
.+..+.+++++|.+|..+|+|++|+..+++|+++.+.. ...+...+..+...+.
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence 23446699999999999999999999999999986432 1334445555554444
No 217
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=3.3e-08 Score=97.38 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=90.4
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++|+...... +.+. .....+++|+|.+|.++++|++|+.++++++.+
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~-------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNE-------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-Cccc-------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999755433 3321 112368999999999999999999999999988
Q ss_pred CCC------ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 008780 477 NPA------HVKGLYRRGMAYMALGEFEEA-QRDFEMMMKVD 511 (554)
Q Consensus 477 ~p~------~~ka~~~~g~a~~~l~~~~~A-~~~~~~al~l~ 511 (554)
.+. .+.+++++|.++..+|++++| ...|++|+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 642 278999999999999999999 77899999863
No 218
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=8e-08 Score=83.12 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~ 523 (554)
...++++|.+++..++|.+|+..++++++++|++ ..+++++|.++..++++++|+..|+++++++|++ ..+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHHH
Confidence 6788999999999999999999999999999988 9999999999999999999999999999999998 66666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 524 KLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 524 ~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
.+.......+++. ..|++.+...|.
T Consensus 107 ~~~~~~~~~~~A~--~~~~~al~~~p~ 131 (148)
T 2dba_A 107 QALEKLGRLDQAV--LDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHTCHHHHH--HHHHHHHHHCSS
T ss_pred HHHHHcCCHHHHH--HHHHHHHHcCCC
Confidence 6666555344444 667776655443
No 219
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=5.5e-08 Score=89.20 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=91.2
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++++........ ......+++++|.+|..+|++++|+.++.+++.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999997654322 1223678999999999999999999999999998
Q ss_pred ---CC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 477 ---NP----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 477 ---~p----~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
.+ ....+++++|.++..+|++++|+..+++++.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33 346789999999999999999999999999873
No 220
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.76 E-value=1.1e-07 Score=79.84 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
....+.++|.++...++|++|+..+++++..+|.++.+++.+|.++..++++++|+..|+++++++|++ ..+...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999998 5666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 008780 526 KKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 526 ~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
.......+++. ..|++.+...|
T Consensus 90 ~~~~~~~~~A~--~~~~~~~~~~p 111 (131)
T 2vyi_A 90 LSSLNKHVEAV--AYYKKALELDP 111 (131)
T ss_dssp HHHTTCHHHHH--HHHHHHHHHST
T ss_pred HHHhCCHHHHH--HHHHHHHhcCc
Confidence 55555334444 56766665544
No 221
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=3.2e-08 Score=98.36 Aligned_cols=108 Identities=10% Similarity=0.032 Sum_probs=91.5
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+.+.|..+.. |+|++|+.+|++|+....... + ......++.|+|.+|.++|+|++|+.++++++.
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--R-------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--C-------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346778899999998 999999999999999544321 1 112367899999999999999999999999999
Q ss_pred hCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 476 ~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+.|.+ ..+++.+|.++..+|++++|+..|++++ ++|+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 87644 3588999999999999999999999999 99965
No 222
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=1.1e-07 Score=79.29 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
..+++++|.++...+++++|+..+.+++..+|.+..+++.+|.++...+++++|+..|+++++++|.+ ..+...+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999987 55666666655
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
......+++. ..|++++...|
T Consensus 88 ~~~~~~~~A~--~~~~~~~~~~~ 108 (125)
T 1na0_A 88 YKQGDYDEAI--EYYQKALELDP 108 (125)
T ss_dssp HHTTCHHHHH--HHHHHHHHHCT
T ss_pred HHhcCHHHHH--HHHHHHHHhCC
Confidence 5544334444 56777665544
No 223
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.75 E-value=4.3e-08 Score=100.20 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=95.6
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..+..+...|..++..|+|++|+..|++|++....... ......++.|+|.||..+|++++|+.++++++.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46778889999999999999999999999996544321 123467899999999999999999999999999
Q ss_pred -----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 476 -----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 476 -----~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
.+|..+.+++.+|.++..+|++++|+..+++|+++.+
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999854
No 224
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.73 E-value=6.4e-08 Score=98.90 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=106.0
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..++..|++..|+..|++|++........ ......+++++|.||..+|+|++|+.++.+++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567778888888888888999999998888855432211 11246789999999999999999999999999
Q ss_pred hhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008780 475 DANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-----VDKSSEPDATAALSKLKKQRQVKLKVRLENSLKG 543 (554)
Q Consensus 475 ~~~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~-----l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~ 543 (554)
++.+ ....+++++|.++..+|++++|+..|++|++ .+|.. ..+...+..+.......+++. ..|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~--~~~~~ 286 (378)
T 3q15_A 210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAF--QFIEE 286 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHH--HHHHH
Confidence 8743 2356899999999999999999999999999 66664 555555666655555333333 45555
Q ss_pred hcc
Q 008780 544 CLT 546 (554)
Q Consensus 544 ~f~ 546 (554)
.+.
T Consensus 287 al~ 289 (378)
T 3q15_A 287 GLD 289 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 225
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.73 E-value=9.2e-09 Score=109.01 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=90.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+..+|..+++.|+|++|+..|++|++ ++|.+ ..+++++|.+|.++++|++|+.+++++++++
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56778999999999999999999999999 88887 6799999999999999999999999999999
Q ss_pred CCChHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008780 478 PAHVKGLYRRGMA--YMALGEFEEAQRDFE-----------MMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a--~~~l~~~~~A~~~~~-----------~al~l~P~~ 514 (554)
|++..+++.++.+ +...+++++|++.++ +++.++|+.
T Consensus 105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999 888999999999999 888887754
No 226
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=2.6e-07 Score=89.46 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Q 008780 447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA 518 (554)
Q Consensus 447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~ 518 (554)
..+++++|.+|.. .+++++|+.+++++++.+ ++.+++++|.++.. .+++++|+..|++|+++++ ..+
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a 148 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---GDG 148 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---HHH
Confidence 3456666666666 666666666666666653 56666666666666 6666666666666666542 234
Q ss_pred HHHHHHHHHH
Q 008780 519 TAALSKLKKQ 528 (554)
Q Consensus 519 ~~~l~~l~~~ 528 (554)
...+..+...
T Consensus 149 ~~~lg~~~~~ 158 (273)
T 1ouv_A 149 CTILGSLYDA 158 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 4444444443
No 227
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.72 E-value=1.4e-07 Score=98.30 Aligned_cols=126 Identities=10% Similarity=0.107 Sum_probs=100.3
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
...+.........+.++|+|++|+..|+++++.... +.+.+ ......+.|+|.+|..+|+|++|+.++.++
T Consensus 284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN--------IYQLKVLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc--------hHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 344556666677788899999999999999985443 33444 224678999999999999999999999999
Q ss_pred HhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHH
Q 008780 474 LDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 474 l~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~~~~~l~~l~~~~ 529 (554)
|++. |.-+..++++|.+|..+|++++|+..|++|+++ -|++ +.+...+..|....
T Consensus 356 L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 356 MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH-SLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHH
T ss_pred HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHH
Confidence 9762 444668999999999999999999999999996 6777 56666666555544
No 228
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.72 E-value=6.5e-08 Score=98.64 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=93.6
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++++. +.|.+. .....++.++|.+|..+++|++|+.++++++.+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCcccH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999 667652 223578999999999999999999999999987
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 477 ------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
.|..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus 77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 4566889999999999999999999999999998663
No 229
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.71 E-value=6.9e-08 Score=98.73 Aligned_cols=108 Identities=10% Similarity=0.106 Sum_probs=94.4
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..+...|+|++|+..|++|++...... + ......++.|+|.||..+|+|++|+.++++++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--Q-------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--C-------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567888999999999999999999999999654431 1 12336789999999999999999999999999
Q ss_pred h-----hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 475 D-----AN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 475 ~-----~~-p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+ .+ |..+.+++++|.++..+|++++|+..|++|+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9 46 8889999999999999999999999999999984
No 230
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.71 E-value=1.7e-07 Score=101.35 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=103.1
Q ss_pred HHHHHHhhhhhhhcCC----------HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc--CHHH
Q 008780 398 AEKIRVTGNRLFKEGK----------FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRK 465 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~----------~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~ 465 (554)
...+..++..+...++ +++|+..|.++++ .+|.+ ..+|++++.++.+++ +|++
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----~~pK~-----------y~aW~hR~w~l~~l~~~~~~~ 127 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWAR 127 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcccccHHH
Confidence 4566777888877777 9999999999999 89988 789999999999999 7899
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 466 SIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 466 A~~~~~~al~~~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
|+.+|++++++||.|..||+.|+.++..++ .+++|++++.++++++|+| ..++.....+-..
T Consensus 128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~ 190 (567)
T 1dce_A 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHh
Confidence 999999999999999999999999999999 9999999999999999999 5666666665544
No 231
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.70 E-value=1.9e-07 Score=100.85 Aligned_cols=140 Identities=12% Similarity=0.073 Sum_probs=111.6
Q ss_pred hHHHHHHHHhhhhhhhcCCH-HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC----------H
Q 008780 395 MDEAEKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------C 463 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~-~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~----------~ 463 (554)
++.-.........+.+.+.| ++|+..|.+++. .+|.+ ..+|++++.++.++++ +
T Consensus 25 ~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~----~nP~~-----------~taW~~R~~~l~~l~~~~~~~~~~~~~ 89 (567)
T 1dce_A 25 LKLYQSATQAVFQKRQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALV 89 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHhcccccchhhhhhhH
Confidence 33333444444445556655 678999999999 89988 7899999999999998 9
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 008780 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ-VKLKVRLENS 540 (554)
Q Consensus 464 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~--~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~ 540 (554)
++|+.+++++++.+|++..+|+.|+-++..++ ++++|++.+.+++++||.| -.++.....+-.... ..+++- +.
T Consensus 90 ~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el--~~ 166 (567)
T 1dce_A 90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEEL--AF 166 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHH--HH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHH--HH
Confidence 99999999999999999999999999999999 7799999999999999998 567766665555544 333443 66
Q ss_pred HHhhcccccccc
Q 008780 541 LKGCLTRSLGKF 552 (554)
Q Consensus 541 y~~~f~~~~~~~ 552 (554)
+.++....+..+
T Consensus 167 ~~~~I~~~p~n~ 178 (567)
T 1dce_A 167 TDSLITRNFSNY 178 (567)
T ss_dssp HHTTTTTTCCCH
T ss_pred HHHHHHHCCCCc
Confidence 777777766544
No 232
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=1.6e-07 Score=86.55 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~----------------ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
...+.++|.++++.++|.+|+..+.+++.+.|.++ .+++++|.++..+++|++|+.+|++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999887 89999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 511 DKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 511 ~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
+|++ ..+...+..+.......+++. ..|++.+...|
T Consensus 118 ~p~~-~~~~~~lg~~~~~~~~~~~A~--~~~~~al~~~p 153 (198)
T 2fbn_A 118 DKNN-VKALYKLGVANMYFGFLEEAK--ENLYKAASLNP 153 (198)
T ss_dssp STTC-HHHHHHHHHHHHHHTCHHHHH--HHHHHHHHHST
T ss_pred Cccc-HHHHHHHHHHHHHcccHHHHH--HHHHHHHHHCC
Confidence 9998 566666666665555334444 56776665544
No 233
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.69 E-value=1e-07 Score=83.19 Aligned_cols=108 Identities=21% Similarity=0.228 Sum_probs=91.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++++........ ......++.++|.++..++++++|+.++++++.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999996554321 1223678999999999999999999999999987
Q ss_pred CC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 477 ~p------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
.+ ....+++.+|.++..+|++++|+..+++++++...
T Consensus 119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 42 23678999999999999999999999999987544
No 234
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.69 E-value=1.6e-07 Score=98.50 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=84.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-----------------
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------------- 460 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl----------------- 460 (554)
...+...|..+...|++++|+..|++|++ ..|.+ ..++.++|.||...
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALE----YIPNN-----------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHH----hCCCh-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44567889999999999999999999999 78887 56777777777542
Q ss_pred --cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 461 --GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 461 --~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..+++|+..+.++++++|.+..+++.+|.++..++++++|+..|++|++++|++
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 346788888888888888888888888888888888888888888888888765
No 235
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=8.8e-08 Score=93.96 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
...+.++|.++++.|+|++|+..+++++.++|+++.+++++|.++..+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999998 56666666666
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 008780 527 KQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
......+++. ..|++.+...|
T Consensus 83 ~~~g~~~~A~--~~~~~al~l~p 103 (281)
T 2c2l_A 83 LEMESYDEAI--ANLQRAYSLAK 103 (281)
T ss_dssp HHTTCHHHHH--HHHHHHHHHHH
T ss_pred HHcCCHHHHH--HHHHHHHHhCc
Confidence 5555333443 56666655444
No 236
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.64 E-value=1.5e-07 Score=95.86 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=92.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|+|++|+..|++++........ ......++.++|.+|..+|++++|+.++++++.+
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4556788999999999999999999999996544211 1123568999999999999999999999999998
Q ss_pred CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 477 ~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
.+.. ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 7765 789999999999999999999999999998543
No 237
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=3.1e-07 Score=90.98 Aligned_cols=120 Identities=12% Similarity=-0.018 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCChHHHHHHHHHH-
Q 008780 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGLYRRGMAY- 491 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~~p~~~ka~~~~g~a~- 491 (554)
++|+..+.++|. ++|.+ ..++++++.++..++ ++++++.+++++|..+|.+..+|+.|+.++
T Consensus 50 ~~aL~~t~~~L~----~nP~~-----------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 50 ERALHITELGIN----ELASH-----------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HCcHH-----------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 567777777777 67776 667777777777777 777777777777777777777777777777
Q ss_pred ---HHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccccc
Q 008780 492 ---MAL---GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL--KVRLENSLKGCLTRSLGKF 552 (554)
Q Consensus 492 ---~~l---~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~--~~~~~~~y~~~f~~~~~~~ 552 (554)
..+ +++++++..+.++++++|.| -.++....-+-....... .+- ..+.+++...+..|
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL--~~~~~~i~~d~~N~ 180 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKEL--SFVDKVIDTDLKNN 180 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHH--HHHHHHHHHCTTCH
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHH--HHHHHHHHhCCCCH
Confidence 555 67777777777777777776 455544444443333111 222 45555555555443
No 238
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=3.1e-07 Score=90.97 Aligned_cols=111 Identities=8% Similarity=-0.100 Sum_probs=93.9
Q ss_pred HHHHHHhhhhhhhcC--CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHH----HHc---cCHHHHHH
Q 008780 398 AEKIRVTGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKL---GECRKSIE 468 (554)
Q Consensus 398 a~~~~~~G~~~~~~g--~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~----~kl---~~~~~A~~ 468 (554)
...+..++..+...+ ++++|+..+.++|. .+|.+ ..++++++.++ .++ +++.+++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~-----------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKN-----------YQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTC-----------CHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCccc-----------HHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 556778888888888 99999999999999 88888 67888888888 666 78899999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFE--EAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 469 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~--~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
+|+++++.+|.|..+|+.|+.++..+++++ ++++.+.++++++|.| -.++.....
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N-~sAW~~R~~ 188 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN-NSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 999999999999999999999999999888 9999999999999988 445544333
No 239
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=1.6e-07 Score=91.37 Aligned_cols=110 Identities=12% Similarity=0.003 Sum_probs=86.1
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-- 477 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-- 477 (554)
....+|..+++.++|.+|+..|++++. .. ++ .....+++++|.++..+|++.+|+.++++++.-.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~--d~-------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~ 203 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGK----WP--DK-------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG 203 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGG----CS--CH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc----cC--Cc-------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence 667788888888888888888876655 21 10 0124588999999999999999999999998654
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008780 478 PA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (554)
Q Consensus 478 p~-~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~ 524 (554)
|. .+.+++++|.++..+|+.++|+..|++++..+|+ ..+...|..
T Consensus 204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence 55 6678999999999999999999999999999997 556666543
No 240
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=1.7e-06 Score=84.92 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
.....+...+..++..++|++|+..|.++++ ..+...+. ......++++|.++...++|++|+.++.+++.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELK----KEEYHPEF-----QQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCCCHHH-----HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc----cccCChhH-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4456677889999999999999999999998 54443221 11244566788888888888888888888887
Q ss_pred hCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC
Q 008780 476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMM---KVDKSS 514 (554)
Q Consensus 476 ~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al---~l~P~~ 514 (554)
+.+.. ..+++.+|.+|..+|+|++|+..|++|+ +..|++
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~ 191 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence 65433 5678888888888888888888888888 445554
No 241
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.61 E-value=7.9e-07 Score=86.02 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHH
Q 008780 447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA 518 (554)
Q Consensus 447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~ 518 (554)
..+++++|.+|.. .+++++|+.+++++++.+ ++.+++++|.++.. .+++++|+..|++++++++ ..+
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a 184 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPG 184 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH
Confidence 4567777777777 777777777777777765 56777777777777 7777777777777777642 345
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhcc
Q 008780 519 TAALSKLKKQ----RQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 519 ~~~l~~l~~~----~~~~~~~~~~~~y~~~f~ 546 (554)
...+..+... ....+++. ..|++...
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~--~~~~~a~~ 214 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEAL--ARYSKACE 214 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHH--HHHHHHHh
Confidence 5555555555 33233333 45555443
No 242
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.60 E-value=1.8e-07 Score=92.06 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=105.6
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|++++|+..|+++++....... ......++.++|.++..+|++++|+.++++++.+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556788899999999999999999999985443211 1223568999999999999999999999999998
Q ss_pred CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008780 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS--E---PDATAALSKLKKQRQVKLKVRLENSLKGCL 545 (554)
Q Consensus 477 ~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~--~---~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f 545 (554)
.+.. ..+++.+|.++..+|++++|+..|++++.+.+.. . ..+...+..+.......+++. ..|++.+
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~a~ 330 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM--HFAEKHL 330 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH--HHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH--HHHHHHH
Confidence 7665 7899999999999999999999999999985532 1 123334444444444333443 5666655
Q ss_pred cc
Q 008780 546 TR 547 (554)
Q Consensus 546 ~~ 547 (554)
..
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 243
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.60 E-value=1.7e-07 Score=78.43 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=71.1
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..++..|+|++|+..|+++++ +.|.+ ..+++++|.|+.++|++++|+..+++++
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNH-----------QALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34577889999999999999999999999999 88887 6799999999999999999999999999
Q ss_pred hhCCCChHHHHHHH
Q 008780 475 DANPAHVKGLYRRG 488 (554)
Q Consensus 475 ~~~p~~~ka~~~~g 488 (554)
..+|+++.......
T Consensus 89 ~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 89 AETSDDETIQSYKQ 102 (117)
T ss_dssp HHHCCCHHHHHTHH
T ss_pred HhCCCcHHHHHHHH
Confidence 99999987654433
No 244
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=2.4e-07 Score=77.87 Aligned_cols=101 Identities=11% Similarity=0.171 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE------PDATA 520 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~------~~~~~ 520 (554)
...++++|.++...++|++|+..+.+++..+|.++.+++.+|.++..++++++|+..|++++.++|++. ..+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999987541 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 521 ALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 521 ~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
.+..+.......+++. ..|++.+...+
T Consensus 84 ~la~~~~~~~~~~~A~--~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAI--HFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHH--HHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHH--HHHHHHHHhCC
Confidence 4444444443333333 56666655433
No 245
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=1.4e-07 Score=91.61 Aligned_cols=134 Identities=11% Similarity=-0.024 Sum_probs=104.4
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
......+..+...|+|++|...|..++. ..|.+ . .++++|.++++.++|.+|+.+++.++...+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~-----------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPV----AGSEH-----------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHH-----------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCch-----------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 3455678888899999999999988766 55543 4 889999999999999999999998887642
Q ss_pred CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 479 AH--VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD--KSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 479 ~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~--P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
.. ..+++.+|.++..+|++++|+..|++++... |.-..++...+..+-+.+...++++ ..|+++....|+
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~--~~l~~a~a~~P~ 240 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV--ALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH--HHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH--HHHHHHHhcCCc
Confidence 21 4589999999999999999999999999654 5433455555556655555566666 788888877664
No 246
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.58 E-value=4.2e-07 Score=73.07 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..++..+|.+++..++ ..+|...++++|++||+++.+++.+|.+++..|+|++|+..|+++++.+|.+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 6788899999876665 7999999999999999999999999999999999999999999999999984
No 247
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.57 E-value=2.6e-07 Score=94.49 Aligned_cols=92 Identities=11% Similarity=0.063 Sum_probs=85.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+.++|..+++.++|++|+..|++|++ ++|.+ ..+++++|.||..+++|++|+.++++|+++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 356678899999999999999999999999 88877 789999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHH
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRD 503 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~ 503 (554)
+|++..++..++.++..++++++|.+.
T Consensus 337 ~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 337 APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888754
No 248
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=2e-06 Score=85.88 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC--HHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--CRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~--~~~A~~~~~~al~~~p~~~ka~~~~g~a~ 491 (554)
+.+++..+.+++. .+|.+ ..++++++.++.++++ |.+++.+|+++++.+|.|..||.+++.++
T Consensus 90 l~~EL~~~~~~L~----~~PKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 90 VKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154 (331)
T ss_dssp HHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7889999999998 88988 7899999999999994 99999999999999999999999999999
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 492 MALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 492 ~~l~~-~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
..++. ++++++++.++++.+|.| ..++.....+-...
T Consensus 155 ~~l~~~~~eel~~~~~~I~~~p~N-~SAW~~R~~ll~~l 192 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQL 192 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHh
Confidence 99999 699999999999999999 45666555554443
No 249
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.56 E-value=1.8e-07 Score=82.51 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=74.3
Q ss_pred HccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF----------EEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 459 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~----------~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
++++|++|+..++++++++|+++.+|+++|.++..++++ ++|+..|++|++++|++ ..+...+..+...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999876 59999999999999998 6677777766655
Q ss_pred HH-----------HHHHHHHHHHHHhhcccccc
Q 008780 529 RQ-----------VKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 529 ~~-----------~~~~~~~~~~y~~~f~~~~~ 550 (554)
+. ..+++. +.|++.+...|+
T Consensus 93 lg~l~P~~~~a~g~~~eA~--~~~~kAl~l~P~ 123 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLAT--QFFQQAVDEQPD 123 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHH--HHHHHHHHHCTT
T ss_pred hcccCcchhhhhccHHHHH--HHHHHHHHhCCC
Confidence 42 344444 788888776664
No 250
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.55 E-value=1e-06 Score=88.38 Aligned_cols=125 Identities=15% Similarity=-0.018 Sum_probs=103.9
Q ss_pred hcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008780 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYRRG 488 (554)
Q Consensus 410 ~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka~~~~g 488 (554)
+.....+|+..+.++|. ++|.+ ..+++.++.++..++ .+++++.+++++|..+|.+..+|+.|+
T Consensus 66 ~~e~se~AL~lt~~~L~----~nP~~-----------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~ 130 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR----MNPAH-----------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL 130 (349)
T ss_dssp TTCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34556789999999999 89998 789999999999999 599999999999999999999999999
Q ss_pred HHHHHc-C-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhcccccccc
Q 008780 489 MAYMAL-G-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKL--------KVRLENSLKGCLTRSLGKF 552 (554)
Q Consensus 489 ~a~~~l-~-~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~--------~~~~~~~y~~~f~~~~~~~ 552 (554)
.++..+ + +++++++.+.++++++|.| -.++.-..-+-....... ++- ..+.+++...+..|
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eEL--e~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSEL--DWCNEMLRVDGRNN 201 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHH--HHHHHHHHHCTTCH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHH--HHHHHHHHhCCCCH
Confidence 999998 8 9999999999999999998 566666555544443222 333 66777777766654
No 251
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.55 E-value=3.3e-07 Score=94.07 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=89.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|+|++|+..|+++++...... + ......++.++|.+|..+|++++|+.++++++.+.
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--D-------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C-------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--C-------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999544321 1 11235689999999999999999999999999987
Q ss_pred CCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008780 478 PAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (554)
Q Consensus 478 p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 512 (554)
+.. ..+++.+|.++..+|++++|+..|++++.+.+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 754 78999999999999999999999999999854
No 252
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.54 E-value=1.4e-06 Score=87.04 Aligned_cols=112 Identities=7% Similarity=-0.088 Sum_probs=97.5
Q ss_pred HHHHHHhhhhhhhcC--CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVL 474 (554)
Q Consensus 398 a~~~~~~G~~~~~~g--~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al 474 (554)
...+..++..+.+.+ .|.+++.++.++++ .+|.+ ..++++++.+...++. +++++.++.+++
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~----~dprN-----------y~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLE----ADERN-----------FHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 344556676666666 59999999999999 89988 7899999999999999 799999999999
Q ss_pred hhCCCChHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYMAL--------------GEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l--------------~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
+.+|.|..||.+++.++..+ +.++++++++.+++.++|+| ..++.-+.-+
T Consensus 173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-~SaW~Y~r~l 236 (331)
T 3dss_A 173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWL 236 (331)
T ss_dssp HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 99999999999999999998 56999999999999999999 5677644433
No 253
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=3.8e-07 Score=85.25 Aligned_cols=129 Identities=11% Similarity=0.079 Sum_probs=79.8
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhh--------c--cCC---CChhHHH-----HHhhhHHHHHHHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN--------H--VNP---QDDEEGK-----VFVGKRNLLHLNVAACLL 458 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~--------~--~~p---~~~ee~~-----~~~~~~~~~~~nla~~~~ 458 (554)
.+..+...|..++..+++++|+..|++|++.-. . ... .+.++.. ....-...+++++|.+|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLV 96 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356677888888888888888888888876200 0 000 0111110 111122456677777777
Q ss_pred H----ccCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008780 459 K----LGECRKSIEACNKVLDANP--AHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (554)
Q Consensus 459 k----l~~~~~A~~~~~~al~~~p--~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~ 527 (554)
. .+++.+|+.+++++++..+ .++.+++++|.+|.. .+++++|+.+|++|+++ |.+ ..+...|..+..
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-GYAEYWAGMMFQ 173 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-THHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-HHHHHHHHHHHH
Confidence 6 6677777777777777766 347777777777777 67777777777777777 444 334444444443
No 254
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=1.1e-06 Score=82.03 Aligned_cols=76 Identities=8% Similarity=-0.037 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCChH
Q 008780 447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL-G-----EFEEAQRDFEMMMKVDKSSEP 516 (554)
Q Consensus 447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l-~-----~~~~A~~~~~~al~l~P~~~~ 516 (554)
..++++||.+|.. .+++.+|+.+++++++. +.++.+++++|.+|... + ++++|+.+|++|.+... .
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~---~ 200 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF---D 200 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC---H
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC---H
Confidence 6899999999999 89999999999999999 77889999999999885 3 89999999999999864 4
Q ss_pred HHHHHHHHHH
Q 008780 517 DATAALSKLK 526 (554)
Q Consensus 517 ~~~~~l~~l~ 526 (554)
.+...|..+.
T Consensus 201 ~A~~~l~~l~ 210 (212)
T 3rjv_A 201 TGCEEFDRIS 210 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 5676676664
No 255
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.49 E-value=3e-07 Score=82.99 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=84.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhH------------------HHHH------hhhHHHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE------------------GKVF------VGKRNLLHLN 452 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee------------------~~~~------~~~~~~~~~n 452 (554)
.+..+...|..++..|++++|+..|++++. ..| +..- ...+ ......++++
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~ 113 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPL----EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE 113 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence 355667778888888888888887777655 333 2110 0000 0112568999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
+|.++..+|++++|+..+.++++.+|++ ..+++.+|.++..+|++++|+..|++++.
T Consensus 114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999976 66999999999999999999999999885
No 256
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=9.2e-07 Score=80.87 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=90.2
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+..+...|..+...|++++|+..|++++...... +.+. .....+++++|.++..+|++++|+.++.+++
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDP-------LAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccH-------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456778899999999999999999999999966533 2221 1236789999999999999999999999999
Q ss_pred hhCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 475 DANP--AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 475 ~~~p--~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
.+.+ .+ ..++..+|.++..+|++++|+..|++++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 7632 22 4467899999999999999999999999874
No 257
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.48 E-value=1.4e-06 Score=71.44 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=67.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+....+.|..+|+.++|..|+.-|++|++....-.... .....++.++|.|+.++|+++.|+.++++++.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45567899999999999999999999999653211100 1136788999999999999999999999999999
Q ss_pred CCChHHHHHHH
Q 008780 478 PAHVKGLYRRG 488 (554)
Q Consensus 478 p~~~ka~~~~g 488 (554)
|++..++.+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 99999888776
No 258
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.45 E-value=6.2e-07 Score=72.91 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=62.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
+..+...|..++..|+|++|+..|+++++ ++|.+ ..+++++|.||.++|++++|+..+++++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE----TDPDY-----------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56788999999999999999999999999 88887 6799999999999999999999999999987
Q ss_pred CC
Q 008780 478 PA 479 (554)
Q Consensus 478 p~ 479 (554)
|.
T Consensus 72 ~~ 73 (100)
T 3ma5_A 72 RE 73 (100)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 259
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.44 E-value=1.9e-06 Score=70.68 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 519 (554)
..-++.+|..+++.++|..|+.++++|+... +..+..+.++|.++..+|+++.|+..+++|++++|++ ..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHH
Confidence 4557899999999999999999999999863 3467889999999999999999999999999999998 4444
Q ss_pred HHHHHHHH
Q 008780 520 AALSKLKK 527 (554)
Q Consensus 520 ~~l~~l~~ 527 (554)
..+..++.
T Consensus 84 ~n~~~~~~ 91 (104)
T 2v5f_A 84 GNLKYFEY 91 (104)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 44443333
No 260
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.43 E-value=2.7e-06 Score=71.51 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CChHHHHH
Q 008780 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK---SIEACNKVLDAN-P-AHVKGLYR 486 (554)
Q Consensus 412 g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~---A~~~~~~al~~~-p-~~~ka~~~ 486 (554)
.....+...|.+++. ..+.+ ..+.+|+|.|+.+..+..+ ++..+...+..+ | ....++|.
T Consensus 15 ~~l~~~~~~y~~e~~----~~~~s-----------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~ 79 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 79 (126)
T ss_dssp HHHHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 344566777777766 44444 5788999999999887666 999999999887 5 67889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008780 487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (554)
Q Consensus 487 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~ 529 (554)
+|.+++.+|+|++|+..++.+|+.+|+| ..+..+...++.+.
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n-~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 55555555554443
No 261
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.43 E-value=1.8e-06 Score=92.40 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=56.1
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
...+...|..+.+.|++++|...|++++. +.|.+.. .+|.+++.++.+++++++|+..+.+|++..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT----------LVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCch----------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 44566777888888999999999999998 7776521 234444444444444444444444444444
Q ss_pred CCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 478 PAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 478 p~~~ka~~~~g~a-~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
|.+...+...+.. +...|++++|+..|+++++.+|++
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 4433333333322 122444444444444444444443
No 262
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=1.3e-06 Score=87.71 Aligned_cols=112 Identities=13% Similarity=-0.027 Sum_probs=99.0
Q ss_pred HHHHHHhhhhhhhcC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-G-ECRKSIEACNKVL 474 (554)
Q Consensus 398 a~~~~~~G~~~~~~g-~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-~-~~~~A~~~~~~al 474 (554)
...+..++..+...+ .+++|+..+.++|. .+|.+ ..++++++.|+.++ + ++.+++.+|+++|
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nPKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAV----QNLKS-----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 445677888888888 59999999999999 89988 78999999999998 7 8999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFE--------EAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~--------~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
+.+|.|..||+.|+.++..++.++ ++++.+.++++++|.| ..++.-...+
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N-~SAW~~R~~l 210 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN-NSAWGWRWYL 210 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 999999999999999999999888 9999999999999998 4455544444
No 263
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.34 E-value=6.4e-06 Score=88.06 Aligned_cols=118 Identities=9% Similarity=0.066 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHh-hCCC
Q 008780 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-------LGECR-------KSIEACNKVLD-ANPA 479 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-------l~~~~-------~A~~~~~~al~-~~p~ 479 (554)
.+|+..|++|+. ..|.+ ..+|+++|..+.+ +|+++ +|+..+++|++ ++|+
T Consensus 255 ~~a~~~y~~al~----~~p~~-----------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 255 KRVMFAYEQCLL----VLGHH-----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHHHHHHHHHH----HHTTC-----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 478889999999 67777 6789999998886 78877 99999999997 8999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
+..+|+.+|..+..+|++++|+..|+++++++|.+...++..+..+..+....++++ ..|++.....+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~--~~~~~Al~~~~ 387 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR--MIFKKAREDAR 387 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTCTT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH--HHHHHHHhccC
Confidence 999999999999999999999999999999999873345666655555444344455 67777766544
No 264
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.31 E-value=9.6e-06 Score=70.16 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=79.8
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCC
Q 008780 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~ 479 (554)
.|..++..+.+.+|+..|++|.+ . .+ ..+++|+|.+|.. .+++.+|+.+++++.+. .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~----~--g~-----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g 91 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE----L--NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N 91 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc----C--CC-----------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence 67777888888999999999998 3 23 6789999999999 89999999999999887 6
Q ss_pred ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008780 480 HVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 480 ~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~ 511 (554)
++.+++++|.+|.. .+++++|+.+|++|.++.
T Consensus 92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 89999999999999 999999999999999985
No 265
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.31 E-value=7.6e-06 Score=82.85 Aligned_cols=108 Identities=16% Similarity=0.075 Sum_probs=88.0
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
.+..+...|..++..|++++|...|++++....... + ......+++++|.++..+|+|.+|+.++++++.+
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--V-------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--c-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455677889999999999999999999998543321 1 1122567889999999999999999999999987
Q ss_pred C--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 477 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 477 ~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
. |....++..+|.++..+|++++|...+++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 5 334667888999999999999999999999998775
No 266
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.28 E-value=2.5e-06 Score=90.17 Aligned_cols=109 Identities=11% Similarity=0.084 Sum_probs=92.4
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (554)
....+..+.+.|..+..+|+|++|+.+|+++|...... .+.++ .....++|||..|..+|+|++|+..+.+
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp--------~~a~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA--------QLGMAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35578888999999999999999999999999976553 44443 2367899999999999999999999999
Q ss_pred HHhh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 473 VLDA-----NPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 473 al~~-----~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
||++ -|++ .+.+-.+++++..++.|.+|...|+++.+-
T Consensus 419 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 419 AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9976 3444 566778999999999999999999998764
No 267
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.26 E-value=3.8e-06 Score=69.62 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008780 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGC 544 (554)
Q Consensus 465 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~ 544 (554)
+|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.......+++. ..|++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~--~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQGQGDRAGAR--QAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcCCHHHHH--HHHHHH
Confidence 57889999999999999999999999999999999999999999999998 667777776666555333443 556655
Q ss_pred ccc
Q 008780 545 LTR 547 (554)
Q Consensus 545 f~~ 547 (554)
+..
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 268
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.17 E-value=2e-05 Score=83.30 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---Ch
Q 008780 447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS---SE 515 (554)
Q Consensus 447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~---~~ 515 (554)
..+++++|.+|.. .+++++|+.+++++++. .++.+++++|.+|.. .+++++|+.+|++|++.+|+ +
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~- 439 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT- 439 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH-
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC-
Confidence 5689999999999 89999999999999986 479999999999999 89999999999999999954 4
Q ss_pred HHHHHHHHHHHH
Q 008780 516 PDATAALSKLKK 527 (554)
Q Consensus 516 ~~~~~~l~~l~~ 527 (554)
..+...|..+..
T Consensus 440 ~~a~~~l~~~~~ 451 (490)
T 2xm6_A 440 ENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHTTSCH
T ss_pred HHHHHHHHhcCH
Confidence 445555555433
No 269
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.11 E-value=2.2e-05 Score=79.40 Aligned_cols=107 Identities=16% Similarity=0.073 Sum_probs=89.3
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.-.+..+...|..++..|++++|+..+++++. ..|.++. .....+++++|.++...|++++|+..+.+++
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALE----ELPPGWF------YSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCch------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33466777889999999999999999999999 4444321 1235688999999999999999999999999
Q ss_pred hhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 475 ~~~p~~------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
.+.+.. ..+++.+|.++...|++++|+..|++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 876533 3457899999999999999999999999985
No 270
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.05 E-value=5e-05 Score=63.89 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l 522 (554)
....+|.|.|+.+..+ ..+++..+...+..+| ....++|.+|.+++.+|+|++|+++.+.+|+++|+| ..+..+.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N-~QA~~Lk 118 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC-HHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC-HHHHHHH
Confidence 5678999999998875 5679999999999888 458899999999999999999999999999999999 5566555
Q ss_pred HHHHHHHH
Q 008780 523 SKLKKQRQ 530 (554)
Q Consensus 523 ~~l~~~~~ 530 (554)
..++.+..
T Consensus 119 ~~Ie~ki~ 126 (134)
T 3o48_A 119 SMVEDKIQ 126 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 271
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.01 E-value=6.6e-05 Score=75.24 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=79.6
Q ss_pred HHHHHhhhhhhh---cCCHHHHHHHHHHHHHHhhccCCCChhHHH---------------------HH------------
Q 008780 399 EKIRVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGK---------------------VF------------ 442 (554)
Q Consensus 399 ~~~~~~G~~~~~---~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~---------------------~~------------ 442 (554)
-.+.-+|..++. ...+.+|+.+|++|++ ++|....-.. .+
T Consensus 197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~----lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQ----SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 344455555554 3456899999999999 7777532110 00
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 443 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
......++.-+|..++..|++++|+..+++|+.++| +.-+|..+|.++...|++++|++.|.+|+.++|..
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 011122444566667778999999999999999986 57788888999999999999999999999999975
No 272
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.98 E-value=5.1e-05 Score=87.34 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=91.7
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP- 478 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p- 478 (554)
.+...|+.++..|+|++|+.+|.+|- -|..+|.|+.++|+|++|++.+++|...++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 45678999999999999999998863 367788888888888888888888854433
Q ss_pred ------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008780 479 ------------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLK 534 (554)
Q Consensus 479 ------------------------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (554)
.++..+..++..|...|.|++|+..|+++|.++|.+ .....+|..+..+-+-++-
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCCHHHH
Confidence 245566678888999999999999999999999887 5677677777666552222
Q ss_pred HHHHHHHHhhcc
Q 008780 535 VRLENSLKGCLT 546 (554)
Q Consensus 535 ~~~~~~y~~~f~ 546 (554)
....+.|.+..+
T Consensus 1333 mEhlk~f~~rin 1344 (1630)
T 1xi4_A 1333 REHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHHHhcc
Confidence 222345554433
No 273
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=7.5e-05 Score=64.43 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=79.3
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
.+++.+|+..|++|.+ ..... +. +|.+|.....+++|+.+++++.+. .++.+++++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~----~g~~~-------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 66 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE----LNEMF-------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHH----TTCTT-------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc----CCCHh-------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 3578999999999998 44322 22 999999999999999999999987 689999999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008780 491 YMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (554)
Q Consensus 491 ~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~ 528 (554)
|.. .+++++|+.+|++|.+.. + ..+...|..+...
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~g--~-~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGLN--D-QDGCLILGYKQYA 105 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHC
Confidence 999 899999999999999873 4 5566677777665
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.93 E-value=0.00012 Score=62.47 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l 522 (554)
....+|.|.|+.+..+ -.+++..++..+..+| ....++|.+|.+++.+++|++|+++.+.+|+.+|+| ..+..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n-~QA~~Lk 117 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHH
Confidence 5688999999999876 5579999999999888 467899999999999999999999999999999999 4555444
Q ss_pred HHHHHH
Q 008780 523 SKLKKQ 528 (554)
Q Consensus 523 ~~l~~~ 528 (554)
..++.+
T Consensus 118 ~~Ie~~ 123 (144)
T 1y8m_A 118 SMVEDK 123 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 275
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.93 E-value=0.00017 Score=76.14 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=54.3
Q ss_pred HHHHHHhhhhhhh----cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH----ccCHHHHHHH
Q 008780 398 AEKIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEA 469 (554)
Q Consensus 398 a~~~~~~G~~~~~----~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~ 469 (554)
+..+...|..++. .+++.+|+..|++|++ . .+ ..+++++|.+|.. .+++++|+.+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----~--~~-----------~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----Q--GY-----------TPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----C--CC-----------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4566677777777 7888888888888876 2 11 3345555555555 5555555555
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008780 470 CNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 470 ~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l 510 (554)
++++.+. .++.+++++|.+|.. .+++++|+..|++|.+.
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5555443 345555555555555 45555555555555443
No 276
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.89 E-value=3.6e-05 Score=67.02 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=65.1
Q ss_pred HHHHHHhhhhhhhcC---CHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 398 a~~~~~~G~~~~~~g---~~~~A~~~Y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
.+...+.|..+.+.. ++++|+..++..++ .+ |. ....+++++|..|+++++|.+|+.+|+++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~----~~~p~----------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP----KGSKE----------EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HSCHH----------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcc----------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 456678888888877 77799999999888 43 31 13579999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHH
Q 008780 474 LDANPAHVKGLYRRGMA 490 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a 490 (554)
|+++|+|..|..-+-.+
T Consensus 98 L~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 98 LQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHH
Confidence 99999999887765443
No 277
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.85 E-value=5.5e-05 Score=72.86 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-hHHHHH
Q 008780 413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----GECRKSIEACNKVLDANPAH-VKGLYR 486 (554)
Q Consensus 413 ~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl-----~~~~~A~~~~~~al~~~p~~-~ka~~~ 486 (554)
....|....++|++ ++|.- ....+|.-+|..|.+. |+.++|..++++||+++|+. ..+++.
T Consensus 178 ~l~~A~a~lerAle----LDP~~---------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~ 244 (301)
T 3u64_A 178 TVHAAVMMLERACD----LWPSY---------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT 244 (301)
T ss_dssp HHHHHHHHHHHHHH----HCTTH---------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH
T ss_pred hHHHHHHHHHHHHH----hCCCc---------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 34666777777777 67652 1267999999999996 99999999999999999975 999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 008780 487 RGMAYMAL-GEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 487 ~g~a~~~l-~~~~~A~~~~~~al~l~P~ 513 (554)
.|..+... +++++|.+.+++|+..+|.
T Consensus 245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 245 YADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999885 9999999999999999876
No 278
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.84 E-value=0.00013 Score=76.44 Aligned_cols=93 Identities=12% Similarity=-0.001 Sum_probs=60.7
Q ss_pred HHHHhhhhhhhcC---CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc----cCHHHHHHHHHH
Q 008780 400 KIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----GECRKSIEACNK 472 (554)
Q Consensus 400 ~~~~~G~~~~~~g---~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl----~~~~~A~~~~~~ 472 (554)
.+...|..+...| ++.+|+..|++|++ ..+.+ ...++++|.+|... +++++|+.++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~----~g~~~-----------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVS----RGTVT-----------AQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCSC-----------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHH----CCCHH-----------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 4567788888888 99999999999998 55554 34445666665444 456666666666
Q ss_pred HHhhCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHh
Q 008780 473 VLDANPAHVKGLYRRGMA-Y--MALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 473 al~~~p~~~ka~~~~g~a-~--~~l~~~~~A~~~~~~al~l 510 (554)
+. |.++.+++++|.+ + ...+++++|+.+|++|.+.
T Consensus 243 aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 243 IA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred Hc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 55 5566666666665 2 3455666666666665544
No 279
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00011 Score=75.77 Aligned_cols=116 Identities=12% Similarity=0.145 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC------------------CCChhHHHH-H------------hh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN------------------PQDDEEGKV-F------------VG 444 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~------------------p~~~ee~~~-~------------~~ 444 (554)
.....+...|..++..|+|++|+..|.+++.....+. +.+.+.... + ..
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 4456688999999999999999999999988654321 111111100 0 01
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
.+..++.++|.+|..+|+|.+|+..+.+++.. .+..+.++..+|.+|..+++|++|+..|++++.+.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 13446667777777777777777777776654 23345567777777777777777777777777664
No 280
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=97.65 E-value=0.00011 Score=76.02 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=64.5
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccCCCCCCccEEEecCCCccchhHHhhcCCCCCCcEEEEEEeCCCccCCCCCCCCC
Q 008780 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (554)
Q Consensus 45 ~~~gd~V~~~y~~~~~~g~~~~st~~~~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~~~~~~~ 124 (554)
++.||.|.++|+++ .||+.|+++. +.++.+.+|+++ + |+.+|.||++|++..|.+..
T Consensus 155 a~~gD~V~id~~~~-~dG~~~~~~~------~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF------------- 211 (433)
T 3gty_X 155 AEAGDLVRVNMEVY-NEEGKKLTSR------EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY------------- 211 (433)
T ss_dssp CCTTSEEEEEEEEE-CTTSCEEEEE------EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-------------
T ss_pred cCCCCEEEEEEEEE-ECCEECcCCC------CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-------------
Confidence 68999999999998 6999999765 358888999887 3 99999999999999998843
Q ss_pred CCCCCCCCceEEEEEEEeeecccc
Q 008780 125 PSTFPKDEELHFEIEMIDFAKAKI 148 (554)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~~ 148 (554)
+|.+..|.|+|.+|.....
T Consensus 212 -----aGk~a~F~VtV~~Ik~~~l 230 (433)
T 3gty_X 212 -----EGKKYTYKLEVEEVYKRTL 230 (433)
T ss_dssp -----TTEEEEEEEEEEEEEEECC
T ss_pred -----CCCeEEEEEEEEEEEEecC
Confidence 1679999999999986543
No 281
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.64 E-value=0.00088 Score=58.68 Aligned_cols=119 Identities=15% Similarity=0.150 Sum_probs=87.1
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-- 477 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-- 477 (554)
.+++....++..+.|+.|+..+..++...+. +++- .--.....++..+|.+++..++|.+|+..|++||.+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~-----~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPEL-----FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTS-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-Cccc-----ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999998885432 2210 0012346788999999999999999999999998652
Q ss_pred -CCC----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 478 -PAH----------------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 478 -p~~----------------------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
+.+ ....|+.+.||..++++++|+..++..-.-.- + ..+...|.+|.
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t-~kvnm~LakLy 165 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-T-PKINMLLANLY 165 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-C-HHHHHHHHHHC
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-C-HHHHHHHHHHh
Confidence 111 25789999999999999999998875422222 2 45666666653
No 282
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.63 E-value=0.00039 Score=67.01 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 462 ECRKSIEACNKVLDANPA--HVKGLYRRGMAYMAL-----GEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 462 ~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l-----~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
....|....++|+++||+ +..+|..+|..|..+ |+.++|..+|++||+++|+....++......
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~ 248 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 478999999999999999 566999999999996 9999999999999999997534555555543
No 283
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.62 E-value=0.00034 Score=55.82 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHHHhhhhhhhcCC---HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~---~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
+..+...|..++..++ ..+|...+++||. ++|.+ ..+++.+|..+++.|+|.+|+.++++++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~-----------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYN-----------EAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566778888875544 7999999999999 89998 7899999999999999999999999999
Q ss_pred hhCCCChH
Q 008780 475 DANPAHVK 482 (554)
Q Consensus 475 ~~~p~~~k 482 (554)
+.+|.++.
T Consensus 71 ~~~p~~~~ 78 (93)
T 3bee_A 71 DSNDPNLD 78 (93)
T ss_dssp TCCCTTCC
T ss_pred hhCCCCcc
Confidence 99998433
No 284
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.61 E-value=0.00032 Score=80.89 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=82.4
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhc---c--CCCChhHHHH-H-hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNH---V--NPQDDEEGKV-F-VGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~---~--~p~~~ee~~~-~-~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
.+.|..+...|.|++|...|+++-..... + .-.+-+.... . +-....+|+++|.++..+|+|++|+.+|.+|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 45699999999999999999986432111 0 0000001000 0 1122568999999999999999999999886
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 475 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+++.+|++.|.++..+|+|++|++.|.+|.+.++..
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence 899999999999999999999999999999988653
No 285
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=97.61 E-value=0.00013 Score=75.38 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=62.5
Q ss_pred CCCCCceEEEEEEEEeCCCcEEEecCCCccEEEEeCCCCccchHHHHhccCCcCcEEEEEEeCCccCCCCCCCCCCCcce
Q 008780 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247 (554)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~gle~~l~~m~~Ge~~~~~v~~~~~~g~~~~~~ip~~~~ 247 (554)
.++.||.|+++|+++ .||..|+++.. .++.+.+|.+. | |+++|.||++||.++|.+.- ++++
T Consensus 154 ~a~~gD~V~id~~~~-~dG~~~~~~~~-~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-------------aGk~ 215 (433)
T 3gty_X 154 PAEAGDLVRVNMEVY-NEEGKKLTSRE-YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-------------EGKK 215 (433)
T ss_dssp CCCTTSEEEEEEEEE-CTTSCEEEEEE-EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-------------TTEE
T ss_pred ccCCCCEEEEEEEEE-ECCEECcCCCC-CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-------------CCCe
Confidence 467899999999996 79999987543 78888999887 4 99999999999999999832 4689
Q ss_pred EEEEEeeeeee
Q 008780 248 VHFEVELVHLI 258 (554)
Q Consensus 248 l~~~v~l~~~~ 258 (554)
..|.|.|.++.
T Consensus 216 a~F~VtV~~Ik 226 (433)
T 3gty_X 216 YTYKLEVEEVY 226 (433)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 99999999995
No 286
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.61 E-value=0.00025 Score=72.94 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
....+..+...|..+++.|+|+.|+..|++|.. ...|.+++.++...|+|+.|..+...
T Consensus 144 ~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~--------------------~~~Wk~v~~aCv~~~ef~lA~~~~l~- 202 (449)
T 1b89_A 144 LYNNVSNFGRLASTLVHLGEYQAAVDGARKANS--------------------TRTWKEVCFACVDGKEFRLAQMCGLH- 202 (449)
T ss_dssp HHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred HHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC--------------------chhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence 334444555666666666666666666666622 45666667777777777777554443
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 474 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|.. ++.-+..+...|...|++++|+..|+++|.+++.+ ..+..+|..+..+-+
T Consensus 203 L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-~~~ftel~il~~ky~ 255 (449)
T 1b89_A 203 IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFK 255 (449)
T ss_dssp TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-HHHHHHHHHHHHTTC
T ss_pred HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHhcC
Confidence 333 33445567788999999999999999999999988 677777877766655
No 287
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.60 E-value=0.00065 Score=70.96 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=57.9
Q ss_pred HHHHHhhhh-h--hhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-----CHHHHHHHH
Q 008780 399 EKIRVTGNR-L--FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-----ECRKSIEAC 470 (554)
Q Consensus 399 ~~~~~~G~~-~--~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-----~~~~A~~~~ 470 (554)
..+...|.. + ...+++.+|+..|++|++ .. + ..+++|+|.+|. .| ++.+|+.++
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~----~g--~-----------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRA----AD--Q-----------PRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH----TT--C-----------HHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----CC--C-----------HHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 345566665 3 457788888888888876 22 2 456666666665 33 666666666
Q ss_pred HHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l 510 (554)
+++. +.++.+++++|.+|.. ..++++|+.+|++|.+.
T Consensus 311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 6666 6666666666666655 33666666666666654
No 288
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00045 Score=70.93 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=82.4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|..++..|+|.+|+..+++++..+...+.. .....++.+++.+|..+++|.+|...+++++.+.+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 34577888889999999999999988865543322 345678999999999999999999999999999766
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
........+..+..+|.+..+...|..|...-
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 208 IYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55556677888888888888888888887653
No 289
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.57 E-value=0.00033 Score=68.81 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=75.1
Q ss_pred hhhhhhhcC--CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q 008780 404 TGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA----- 476 (554)
Q Consensus 404 ~G~~~~~~g--~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----- 476 (554)
.+...+..| ++..|...|+++.. ..|... ...+++| |++++|+|++|...++.+++.
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~----~~p~~~---------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQ----TFPTWK---------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHT----TSCSHH---------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHH----hCCCcc---------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence 343344444 89999999999776 444310 0345555 899999999999999988876
Q ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 477 -----~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+|+++.++.++..+...+|+ +|.+.+.++.+++|++
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 58999999999999999998 8999999999999998
No 290
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.56 E-value=0.00016 Score=75.00 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (554)
+....+..+.+.|..+..+|+|++|+.+|+++|...... .+.++ .....++|+|..|..+|+|++|+.++.
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--------~~a~~l~nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP--------VRGVQVMKVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH--------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 445678889999999999999999999999999977654 34442 346789999999999999999999999
Q ss_pred HHHhh-----CCCC---hHHHHHHHHHHHHc
Q 008780 472 KVLDA-----NPAH---VKGLYRRGMAYMAL 494 (554)
Q Consensus 472 ~al~~-----~p~~---~ka~~~~g~a~~~l 494 (554)
+|+++ -|++ ...+.+++.++..+
T Consensus 396 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 396 LAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99976 3444 34455566666544
No 291
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.44 E-value=0.00035 Score=72.47 Aligned_cols=75 Identities=9% Similarity=0.000 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (554)
....+..+.+.|..+..+|+|++|+.+|+++|...... .+.++ .....++|||..|..+|+|++|+..+++
T Consensus 336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp--------~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL--------NVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34567788899999999999999999999999976654 44443 2367899999999999999999999999
Q ss_pred HHhh
Q 008780 473 VLDA 476 (554)
Q Consensus 473 al~~ 476 (554)
|+++
T Consensus 408 Al~i 411 (433)
T 3qww_A 408 AIAI 411 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9976
No 292
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.41 E-value=0.0038 Score=63.76 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=100.9
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc-----C--CCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-----N--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~-----~--p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (554)
+.....+...|......++...|...|.+|+..+..- . ++-..+...+.+.+..+...++.+++.+|++.+|+
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3345566677777778899999999999999865421 0 11122345567777888899999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHH
Q 008780 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-------VDKSSEPDATAALSK 524 (554)
Q Consensus 468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~-------l~P~~~~~~~~~l~~ 524 (554)
..+.+++..+|-+..+|..+-.+|...|+..+|++.|+++.+ ++|. +..+.....
T Consensus 192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~--~~l~~l~~~ 253 (388)
T 2ff4_A 192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG--PTLRALNER 253 (388)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC--HHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999988755 3676 344544444
No 293
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.31 E-value=0.0016 Score=64.00 Aligned_cols=100 Identities=7% Similarity=-0.019 Sum_probs=77.5
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA- 479 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~- 479 (554)
+...|..++..|++++|++.+.+++. ..+... ...++..++.+++++++.+.|...+++..+.+|+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~---------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGID----NDEAEG---------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTT---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 45788888899999999999999887 554110 1567888899999999999999999999888883
Q ss_pred ---ChHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHhCCC
Q 008780 480 ---HVKGLYRRGMA--YMALG--EFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 480 ---~~ka~~~~g~a--~~~l~--~~~~A~~~~~~al~l~P~ 513 (554)
+-..+..++.+ .+..| ++.+|...|+++....|+
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 23445555555 55556 899999999998887776
No 294
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.30 E-value=0.00018 Score=73.93 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=63.9
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~ 479 (554)
.+...|+.++..|+|++|+.+|.++ .-+.++|.|+.++|+|++|++.+.++ +
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~ 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKA-----N 175 (449)
T ss_dssp -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----C
Confidence 7889999999999999999999975 24789999999999999999999999 5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
++++|.....++..+|+|+.|..+... +..+|++
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~ 209 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE 209 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh
Confidence 899999999999999999999887775 4456643
No 295
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.04 E-value=0.0022 Score=53.69 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
.-.+++.+|..|+++|+|.+|+.+|+.+|+.+|+|..|.-.+..+
T Consensus 73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999998887655443
No 296
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.99 E-value=0.007 Score=51.53 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=53.8
Q ss_pred HHHhhhhhhhcCC---HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 008780 401 IRVTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (554)
Q Consensus 401 ~~~~G~~~~~~g~---~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~ 477 (554)
.++.+..+.+..+ -.+++..++..++ ..|.. +-.|++.+|..++|+++|.+|..+|+.+|+.+
T Consensus 42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~----~~~~~----------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESR----------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHH----HCCST----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCccc----------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444554433 2345555555555 34433 35799999999999999999999999999999
Q ss_pred CCChHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMA 490 (554)
Q Consensus 478 p~~~ka~~~~g~a 490 (554)
|+|..|.-.+..+
T Consensus 108 P~n~QA~~Lk~~I 120 (144)
T 1y8m_A 108 RNNKQVGALKSMV 120 (144)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9998876654433
No 297
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.91 E-value=0.0041 Score=54.47 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC--------hhHH--HHHhhhHHHHHHHHHHHHHHccCHHH
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD--------DEEG--KVFVGKRNLLHLNVAACLLKLGECRK 465 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~--------~ee~--~~~~~~~~~~~~nla~~~~kl~~~~~ 465 (554)
..++.+.-.|+.+|.+++|.+|...|++||.....+.-.. .... .........+.+.+|.||.+++++.+
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence 3577788999999999999999999999998665321000 0000 00001124688999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780 466 SIEACNKVLDANPAHVKGLYRRGMAY 491 (554)
Q Consensus 466 A~~~~~~al~~~p~~~ka~~~~g~a~ 491 (554)
|+...+.+-. .-..++.-.-+|+.|
T Consensus 141 Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 141 AIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 9998765422 235677777777655
No 298
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.86 E-value=0.0063 Score=51.14 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a 490 (554)
+..+++.+|..+.|+|+|.+|..+|+.+|+.+|+|..|.-.+..+
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 367999999999999999999999999999999999887655444
No 299
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.83 E-value=0.02 Score=49.11 Aligned_cols=128 Identities=9% Similarity=0.008 Sum_probs=92.4
Q ss_pred ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHH
Q 008780 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (554)
Q Consensus 390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (554)
+.+..+..+..+-..|+-+-. +-.++-+..|++|+. ..|.+. ...-.-.+.++.+.|.. ..+++.++|...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d-~~l~rlrd~YerAia----~~Pp~k---~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v 82 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIE----ALPPDK---YGQNESFARIQVRFAEL-KAIQEPDDARDY 82 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHH----HSCGGG---GTTCHHHHHHHHHHHHH-HHHHCGGGCHHH
T ss_pred CHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHHHHHH----cCCccc---cccHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 445555555555555655444 444788899999998 333321 11122235566666644 567999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008780 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (554)
Q Consensus 470 ~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~ 526 (554)
|+.++.+....++.|...|+--...|+...|++.+.+|+.+.|....-...+++.|+
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 999999988889999999999999999999999999999999987555555555554
No 300
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.77 E-value=0.023 Score=62.18 Aligned_cols=145 Identities=6% Similarity=-0.002 Sum_probs=85.0
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhh-------ccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFN-------HVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~-------~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
...+....+.|+++.|...|++++..+. .-.|.+++....+......+|...+.+..+.+..+.|...+.+|+
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455556678899999999999998541 111332221111222223456666666667777777777777777
Q ss_pred hh-CCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008780 475 DA-NPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSL 549 (554)
Q Consensus 475 ~~-~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~ 549 (554)
+. .+...+.|...|..-...+ +++.|+..|+++++..|++ ...+.....+........++| ..|.+.....+
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~~~AR--~lferal~~~~ 535 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD-GEYINKYLDFLIYVNEESQVK--SLFESSIDKIS 535 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCHHHHH--HHHHHHTTTSS
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcC
Confidence 76 4344556655555555554 3777777777777777766 444444333333333344444 66666655443
No 301
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.48 E-value=0.0094 Score=59.65 Aligned_cols=131 Identities=8% Similarity=-0.022 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHH-------HHHhhhHHHHHHHHHHHHHHccCH-----------HHHHHHHHHHHhh
Q 008780 415 ELAKAKYEKVLRDFNHVNPQDDEEG-------KVFVGKRNLLHLNVAACLLKLGEC-----------RKSIEACNKVLDA 476 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~~~~p~~~ee~-------~~~~~~~~~~~~nla~~~~kl~~~-----------~~A~~~~~~al~~ 476 (554)
..|..+|-++..++....+.+-... -.+......++..++.||..+..+ ..|+. ...++..
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~ 272 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPE 272 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhccc
Confidence 3677788888777665433221111 112233445777788888642211 12222 1134467
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 477 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
+|.++.++..++.++...|++++|+..+++|+.++|+ ......+..+.......+.+. ..|.+.|...|.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~--e~~~~AlrL~P~ 342 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAA--DAYLTAFNLRPG 342 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHSCS
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHH--HHHHHHHhcCCC
Confidence 8999999999999999999999999999999999975 345566666665555444444 567777766553
No 302
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.43 E-value=0.014 Score=64.01 Aligned_cols=134 Identities=10% Similarity=-0.059 Sum_probs=94.2
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPA 479 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~ 479 (554)
+...++...+.+..+.|...|.+|+..+ .+.. ..+|...|..-.+.+ +++.|...++++|+..|+
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~~-----------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLK---KLVT-----------PDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGSC-----------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCC-----------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 4444555556788899999999998821 1111 345666666655654 499999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLKKQRQVKLKVRLENSLKGCLTRSLG 550 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~~~~~ 550 (554)
++..|...+......++.+.|+..|++|+...|+ ....++.............+..+ +.++++....|.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~--~v~~R~~~~~P~ 573 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR--TLEKRFFEKFPE 573 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH--HHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHhCCC
Confidence 9999988888888999999999999999999884 22455555555555444222233 556666554443
No 303
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=95.32 E-value=0.1 Score=50.64 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=75.5
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-------CHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-------ECRKSI 467 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-------~~~~A~ 467 (554)
+.......+.|-.++..|+|.+|+..|+.+|..+--+.-++++|.++.+++...|...+-.+-+.+. +..+.+
T Consensus 111 l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~l 190 (325)
T 3mv2_A 111 LDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRML 190 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 3444445678999999999999999999999876655445556666666665555433333333321 112222
Q ss_pred HHHHH--HHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 468 EACNK--VLDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 468 ~~~~~--al~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
+...- -..+.|.+ .-++..--...++.++|..|....++.|++.|..
T Consensus 191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 21111 11223333 3344444556778899999999999999999975
No 304
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.29 E-value=0.27 Score=42.82 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh--h---------------CCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLD--A---------------NPAHVKGLY-RRGMAYMALGEFEEAQRDFEMMM 508 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~--~---------------~p~~~ka~~-~~g~a~~~l~~~~~A~~~~~~al 508 (554)
+...+--+.||.++++|..|+...+..|+ + ||.+-.-++ .+|..+..+|+.++|+..|.+..
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 45566778999999999999999999992 2 244444444 46999999999999999999999
Q ss_pred HhCCCC
Q 008780 509 KVDKSS 514 (554)
Q Consensus 509 ~l~P~~ 514 (554)
..+|--
T Consensus 142 ~~~~lf 147 (242)
T 3kae_A 142 GKSFLF 147 (242)
T ss_dssp HHCCCH
T ss_pred CCcccc
Confidence 988753
No 305
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.13 Score=56.39 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~a 507 (554)
.++.--|..++..++|+-|+..+++|...-|....+|++++.+|..+++|+.|+-.++.+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345555666778899999999999999999999999999999999999999999888876
No 306
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.20 E-value=0.17 Score=49.14 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHc--cCH-----HHHHHH
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GEC-----RKSIEA 469 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl--~~~-----~~A~~~ 469 (554)
......+.|-.++..|+|.+|+..|+.+|..+--+.-++++|.++.+++...|...+-.+-+.+ ++. ++..+.
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~ 180 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRI 180 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHH
Confidence 3444568899999999999999999999997665555666666666666665544443333333 211 222222
Q ss_pred HHHHH-----hhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 470 CNKVL-----DANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 470 ~~~al-----~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
++-+- .+.|.+ .-++..--...++.++|..|....++.|++.|+
T Consensus 181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 22221 223433 334444455677889999999999999999986
No 307
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.74 E-value=0.72 Score=48.30 Aligned_cols=109 Identities=13% Similarity=-0.015 Sum_probs=76.6
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHH----------HHHh-------------------hhHHHHH
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG----------KVFV-------------------GKRNLLH 450 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~----------~~~~-------------------~~~~~~~ 450 (554)
.+...+..+.+.|+.+.|...|.+|+. . |.+..-+ +.+. .....+|
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~----~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIE----M-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----H-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh----C-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 355667777788999999999999999 5 6543111 0000 1112456
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 008780 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P~~ 514 (554)
.+.+....+.+..+.|...+.+| ...+.....|...|..-..++ +++.|+..|+.+++..|++
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence 66666777788899999999999 433335556666666666556 6999999999999998886
No 308
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.32 E-value=0.3 Score=49.38 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=79.4
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CC
Q 008780 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---PA 479 (554)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~---p~ 479 (554)
..|..++..|+|.+|+..+.+.++.+..++. ......++......|..++++.++...+.+|.... +.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 6889999999999999999999998766532 23457788899999999999999999999987553 11
Q ss_pred C----hHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008780 480 H----VKGLYRRGMAYM-ALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 480 ~----~ka~~~~g~a~~-~l~~~~~A~~~~~~al~ 509 (554)
+ +.....-|..|+ ..++|..|..+|-.+++
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 2 234445688999 89999999999999875
No 309
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.28 E-value=0.17 Score=55.67 Aligned_cols=59 Identities=24% Similarity=0.297 Sum_probs=53.9
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
.+..++..+..+++|+.|+.+-++|+. +.|.+ ..+|..||.||.++++|+.|+-..+.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~----~aPse-----------F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTE----LALDS-----------FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHh----cCchh-----------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 466778888899999999999999999 88888 889999999999999999999888776
No 310
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.25 E-value=0.52 Score=44.62 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=56.4
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008780 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (554)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 515 (554)
.+++.++.++|+..+...++.+|.|++.-..+-+.++-.|+|+.|..-++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 456789999999999999999999999999999999999999999999999999999863
No 311
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.66 E-value=0.28 Score=50.52 Aligned_cols=99 Identities=14% Similarity=-0.000 Sum_probs=78.0
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--- 477 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~--- 477 (554)
+..+|..+++.|++..|++.|.++..+... +.. ...+++++..+++..++|..+..++.++..+-
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~----------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGA----------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCS----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHH----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 468899999999999999999998885432 222 36788889999999999999999999987552
Q ss_pred CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 478 PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 478 p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
++. .+.....|.+++..++|.+|...|-.++.-.
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 221 2345556888888999999999998876643
No 312
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.82 E-value=2.1 Score=40.52 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=53.6
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHH
Q 008780 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (554)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka 483 (554)
...+++.++.++|+......++ ..|.| ..+...+...+.-.|+|++|...++.+.+++|.....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR----~~P~d-----------a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 3568899999999999999999 89998 4555555555667899999999999999999987654
No 313
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=91.74 E-value=1.5 Score=45.74 Aligned_cols=111 Identities=10% Similarity=-0.017 Sum_probs=80.4
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDAN 477 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~ 477 (554)
..+...+....+.+..+.|...|.+| . ..+.. ..++...|..-...+ +++.|...++.+++..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~~~~~-----------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-G----NEGVG-----------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-T----TSCCC-----------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-h----CCCCC-----------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 34455555555677899999999999 4 22222 345555565555555 6999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 478 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
|+++..+...+.-...+|+.+.|+..|+++ +.+ ..++.....+.....
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~-~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRL----EKT-SRMWDSMIEYEFMVG 398 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCB-HHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHH-HHHHHHHHHHHHHCC
Confidence 999888877788888899999999999998 233 456666666555544
No 314
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.60 E-value=1.2 Score=46.47 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
...++.++|........+..|..+|.+|+.+.|++-..|..+|......++.-+|+-+|.+++...... +.++.-|..+
T Consensus 151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf-~~a~~nL~~~ 229 (497)
T 1ya0_A 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC-hhHHHHHHHH
Confidence 345778889888888999999999999999999999999999999999999999999999999876555 3444444433
No 315
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=91.41 E-value=0.43 Score=36.63 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=36.2
Q ss_pred CChhh-hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 389 LSFDG-IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 389 ~~~~~-~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
|+..+ .++.|..+..+|...=+.|+|.+|+.+|..|+++|..
T Consensus 1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34445 6788999999999999999999999999999998754
No 316
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.17 E-value=3.3 Score=43.33 Aligned_cols=100 Identities=10% Similarity=0.104 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCChHHHHHHHH
Q 008780 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGM 489 (554)
Q Consensus 411 ~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~g~ 489 (554)
.+..+.|...|.+... ..+.|+ ...|+.+..+|.+.|++++|...+++..+.. .-+...|-.+-.
T Consensus 83 ~~~l~~A~~lf~~M~~--~G~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIV--DKVVPN------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp CHHHHHHHHHHHHHHH--TTCCCC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH--hCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence 4456778887777554 123343 4678888889999999999999999887653 236888888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Q 008780 490 AYMALGEFEEAQRDFEMMMKV--DKSSEPDATAALSKL 525 (554)
Q Consensus 490 a~~~l~~~~~A~~~~~~al~l--~P~~~~~~~~~l~~l 525 (554)
+|...|++++|.+.|+...+. .|+. ......+.-+
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~-~ty~~Li~~~ 185 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEE-PELAALLKVS 185 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHH
Confidence 999999999999999988774 5653 3344444433
No 317
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=89.74 E-value=4.4 Score=42.30 Aligned_cols=99 Identities=9% Similarity=0.027 Sum_probs=79.8
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CC
Q 008780 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PA 479 (554)
Q Consensus 401 ~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~ 479 (554)
+...-+.+.+.|++++|...|++..+ ..+.|+ ...|+.+-.+|.+.|++++|...+++..+.. .-
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~--~g~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKA--FGIQPR------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCc------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 44556678899999999999998766 113343 4678888888999999999999999988753 23
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DKS 513 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--~P~ 513 (554)
+...|..+-.++...|++++|.+.|++..+. .|+
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 6788999999999999999999999987764 565
No 318
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=88.74 E-value=1.5 Score=35.90 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=37.2
Q ss_pred CCChh-hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 388 GLSFD-GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 388 ~~~~~-~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
.|+.. ..++.|..+..+|...=..++|.+|+.+|..|+++|..
T Consensus 7 ~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 7 GMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45555 67889999999999999999999999999999998754
No 319
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.71 E-value=8.4 Score=39.47 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=78.4
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
+.+......+..++..|+|.+|.............. .+ ...+..+++.....|+..++|.+|...++++..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--ME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356666788999999999999999998876532221 22 123466777888889999999999999998742
Q ss_pred ---hCCCC--hH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 476 ---ANPAH--VK--GLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 476 ---~~p~~--~k--a~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
-.+.+ .+ .+...|..+...++|.+|-.+|..++..
T Consensus 206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 206 KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 22322 33 4455688888999999999999988764
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=87.57 E-value=1.2 Score=34.11 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=35.5
Q ss_pred CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
|+....++.|..+..+|...=..|+|.+|+.+|..|++++..
T Consensus 4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 444456778889999999999999999999999999997654
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=86.89 E-value=2.5 Score=44.10 Aligned_cols=80 Identities=10% Similarity=-0.002 Sum_probs=70.0
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
..+...|...--+..+..|...|.+|+. +.|.+ ...|+.+|.++...++.-+|+-+|.++|....
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~----~~P~~-----------G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~ 217 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSN-----------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTB-----------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHH----hCCCC-----------CchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence 3566788888888889999999999999 88987 78999999999999999999999999998877
Q ss_pred CChHHHHHHHHHHHH
Q 008780 479 AHVKGLYRRGMAYMA 493 (554)
Q Consensus 479 ~~~ka~~~~g~a~~~ 493 (554)
..+.|.-++...+..
T Consensus 218 Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 218 PFPAASTNLQKALSK 232 (497)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHH
Confidence 788888888777764
No 322
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=86.71 E-value=1.7 Score=33.20 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCh-hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 389 LSF-DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 389 ~~~-~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
|++ ...++.|..+..+|...=+.|+|.+|+.+|..|+++|..
T Consensus 9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 444 356788999999999999999999999999999998754
No 323
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=86.25 E-value=2.8 Score=32.79 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
..++.|..+..+|..+-+.++|.+|+.+|..|+++|..
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999998754
No 324
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.04 E-value=4.7 Score=35.56 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=21.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVL 425 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al 425 (554)
...++..|.....+|++.-|.++|+++=
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3457788888888888888888887753
No 325
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=82.50 E-value=3.7 Score=31.54 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
..|..+..+|..+-..|+|.+|+.+|..|+++|..
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 35677888888889999999999999999998654
No 326
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=82.25 E-value=4.5 Score=31.13 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
-+..|-.+-.+++.+.+.|+|++||.+.++|..+|..
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999998865
No 327
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.95 E-value=6.8 Score=31.70 Aligned_cols=74 Identities=12% Similarity=0.027 Sum_probs=55.8
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc---cCC----CChhHHHHHhhhHHHHHHHHHHHHHHccCHH
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH---VNP----QDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~---~~p----~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~ 464 (554)
....+.|-.+.++|-..=..|+-+.|+.+|++.+..|.. +.. ...+.|+..+.+......|+..+.-+++...
T Consensus 16 k~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le 95 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILE 95 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778887777789999999999999998764 222 3346788888888888889988887776544
Q ss_pred H
Q 008780 465 K 465 (554)
Q Consensus 465 ~ 465 (554)
.
T Consensus 96 ~ 96 (116)
T 2dl1_A 96 K 96 (116)
T ss_dssp H
T ss_pred h
Confidence 4
No 328
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.33 E-value=7.7 Score=38.92 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=53.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCC--------C--C------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANP--------A--H------------VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p--------~--~------------~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
..|......++...|...+.+|+.+.. . + ..++..++.++..+|++++|+..+.+++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444456889999999999998742 1 1 23455678888999999999999999999
Q ss_pred hCCCChHHHHHHHHH
Q 008780 510 VDKSSEPDATAALSK 524 (554)
Q Consensus 510 l~P~~~~~~~~~l~~ 524 (554)
.+|-++ .++..|-.
T Consensus 200 ~~P~~E-~~~~~lm~ 213 (388)
T 2ff4_A 200 EHPYRE-PLWTQLIT 213 (388)
T ss_dssp HSTTCH-HHHHHHHH
T ss_pred hCCCCH-HHHHHHHH
Confidence 999984 44444433
No 329
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=81.04 E-value=5.6 Score=40.54 Aligned_cols=92 Identities=21% Similarity=0.158 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHHHhhhh--hhhcCC-HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNR--LFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~--~~~~g~-~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (554)
..+++..|+.++.+++. --+.-+ -..|+.+|++|+++|+.+...++-+ ....++++|.- |+.|=
T Consensus 422 L~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~-------~v~~~~~~ak~------yE~aG 488 (526)
T 2wb7_A 422 LQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQ-------MFLNYLNAAKK------HEMAG 488 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH-------HHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH-------HHHHHHHHhhh------hhhcc
Confidence 44555566666665522 112222 3568899999999888876444211 13445555433 34433
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 468 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+++. .|.-....|..+.|...-.+|-++
T Consensus 489 Dyy~---------------~AA~k~~yG~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 489 DYYV---------------NAARKALNGDLEQAKIDAEKAKEY 516 (526)
T ss_dssp HHHH---------------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHH---------------HHHHHHhcCccHHHHHHHHHHHHH
Confidence 3333 333344567777777666655544
No 330
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.18 E-value=3.5 Score=42.87 Aligned_cols=68 Identities=9% Similarity=0.059 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP--AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
..+++-+-..|+..+.|++|.....++.-... .| +.-+|..|.++...++|.+|..+|..|++.-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 56788888899999999999999999853221 11 5567889999999999999999999999988765
No 331
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=79.85 E-value=6 Score=43.41 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
..|.++|..+++.++++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 46667777777777777777777664
No 332
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.32 E-value=4.2 Score=47.26 Aligned_cols=106 Identities=10% Similarity=-0.036 Sum_probs=74.6
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCC--ChhHHHH------HhhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ--DDEEGKV------FVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~--~~ee~~~------~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (554)
.-+|..++..|++++|..+|++|..-+..-... ...+... ........|+.+...+.+.+.++.++.++..|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999999999999886432211111 1011100 11223456778888888999999999999999
Q ss_pred HhhCCCC-h----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008780 474 LDANPAH-V----KGLYRRGMAYMALGEFEEAQRDFEMM 507 (554)
Q Consensus 474 l~~~p~~-~----ka~~~~g~a~~~l~~~~~A~~~~~~a 507 (554)
|+..+.+ . ..|.+.=.++..+++|++|...+...
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9876433 2 25788889999999999998877543
No 333
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.25 E-value=14 Score=37.20 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=78.8
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc------------------CCCChhH-HHH------------Hhhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV------------------NPQDDEE-GKV------------FVGK 445 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~------------------~p~~~ee-~~~------------~~~~ 445 (554)
.-....+.|..+.+.|++++-.........++..+ .|...+. .+. ..-+
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999988777765433322111 1333221 111 1112
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDA----NP--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p--~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+..+-..+|..|+..|+|.+|+..+.+++.. |. .-...+....+.|..++++..|.+.|.+|....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 3335568999999999999999999988864 21 124567778999999999999999999998763
No 334
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=78.07 E-value=3.9 Score=44.97 Aligned_cols=19 Identities=0% Similarity=-0.087 Sum_probs=13.4
Q ss_pred HHHHHHHccCHHHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACN 471 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~ 471 (554)
...||.++++|..+...+.
T Consensus 700 A~~~y~~~~d~~~l~~l~~ 718 (814)
T 3mkq_A 700 AIEAFTNAHDLESLFLLHS 718 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHccChhhhHHHHH
Confidence 4558888888887766554
No 335
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.57 E-value=32 Score=33.53 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=61.0
Q ss_pred hhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHH-HHHHhhccCCCChhHHHHHhhhHH------------HHHHHHHHHHH
Q 008780 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEK-VLRDFNHVNPQDDEEGKVFVGKRN------------LLHLNVAACLL 458 (554)
Q Consensus 392 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~-al~~l~~~~p~~~ee~~~~~~~~~------------~~~~nla~~~~ 458 (554)
++..+.-+.++...+.+.++++|++|+..... |+..+.. ........+--+.. ....++..++.
T Consensus 29 ~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~---~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 29 EEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRS---GQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHC---CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44577778889999999999999999986544 3333321 10000000000000 11122233332
Q ss_pred HccC--------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008780 459 KLGE--------CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDF 504 (554)
Q Consensus 459 kl~~--------~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~ 504 (554)
.... ..+|+.+..+.=...-.++..+...|..+...++|.+|...|
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 2221 233444444321223457888888999999999999988776
No 336
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.19 E-value=6.3 Score=34.72 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=41.0
Q ss_pred HHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 458 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
+.+|+++.|.+.|+.. ++...|-++|.+.+..|+++-|..+|+++-.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4689999999998775 6788999999999999999999999987744
No 337
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.94 E-value=18 Score=38.78 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=45.6
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
..++.++|..|..++.+.-.......++.|.+|.++..+|+.++|...|+++..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345679999999999876554446788999999999999999999999988765
No 338
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=74.08 E-value=34 Score=29.90 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=44.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (554)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 508 (554)
+-++..+.-.|+|.+|+-.... -+-+.+.|..+.|+..+.+|..|+.++++.+
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778999998876543 4568899999999999999999999999999
No 339
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=69.27 E-value=44 Score=37.92 Aligned_cols=101 Identities=10% Similarity=-0.064 Sum_probs=78.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 398 a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~-~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
-..+...-+.+++.|+.++|...+.+.-+... .+.|+ ...|+-+-..|.+.|++++|+..+++..+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd------------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT------------LDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC------------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34567778889999999999999977544221 23443 578888888999999999999999998765
Q ss_pred C-CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 008780 477 N-PAHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKV 510 (554)
Q Consensus 477 ~-p~~~ka~~~~g~a~~~l~~-~~~A~~~~~~al~l 510 (554)
. .-|.-.|--+-.++...|+ .++|.+.|+...+.
T Consensus 195 G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 3 2377888888888999887 57888888888774
No 340
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=67.72 E-value=21 Score=30.55 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHccCH------HHHHHHHHHHHhhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 449 LHLNVAACLLKLGEC------RKSIEACNKVLDANPA--------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 449 ~~~nla~~~~kl~~~------~~A~~~~~~al~~~p~--------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+.+.....-+.|+. ++.++.|++|+..-|. ++..|.+.|.- ..+++.++|+..|+.|+++...-
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF 93 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF 93 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH
Confidence 444444444445666 7778888888876553 34455666644 67799999999999999985443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 515 EPDATAALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 515 ~~~~~~~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
.-++-...+.+-++..-.+++ +.+.+..+
T Consensus 94 -AKiwi~~AqFEiRqgnl~kAR--kILg~AiG 122 (161)
T 4h7y_A 94 -AFVHISFAQFELSQGNVKKSK--QLLQKAVE 122 (161)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHH--HHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHH--HHHHHHhc
Confidence 444444444444433333444 44444443
No 341
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.03 E-value=35 Score=28.74 Aligned_cols=51 Identities=20% Similarity=0.109 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 461 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
++-++--+.+...+.-++-++..++.+|.||..+|+..+|...+.+|.+--
T Consensus 105 ~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 105 GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp TCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333443333444344456679999999999999999999999999998754
No 342
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.89 E-value=8.5 Score=29.63 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMM 508 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al 508 (554)
-.+-|++.++...|+|++|+.+.++|.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344566666666666666665544444
No 343
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=63.23 E-value=30 Score=26.37 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 008780 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLR 426 (554)
Q Consensus 396 ~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~ 426 (554)
..+..+...|..+|+.++|.+|+..++++..
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 5678889999999999999999999999987
No 344
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=61.47 E-value=25 Score=35.94 Aligned_cols=103 Identities=6% Similarity=-0.008 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------C--CC
Q 008780 412 GKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--------P--AH 480 (554)
Q Consensus 412 g~~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~--------p--~~ 480 (554)
...+.|.+...++...+.. ..+...+..-.-+.....+.+++..+|+++++...|....+..-... | .-
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3456666666666664321 12111110000122234456778899999999888777765442222 2 12
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV-DKSS 514 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-~P~~ 514 (554)
+.-+|.+|+.++..++|.+|..+|..|++. -|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 457899999999999999999999999998 6654
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.50 E-value=45 Score=28.68 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHH-HHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH-LNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~-~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
......|..+|..|+|-+|=+.++.+-. ..+...++...+ ...+. .-.|..+.+.+++..|...+.+++..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~----~~~~~~~er~~l---qGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWY----NYGRGNTESKFL---HGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT----TTCSSSHHHHHH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHH----hcCCCchHHHHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456788999999999999888887655 333321222222 23344 55667777889999999999999873
No 346
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=58.34 E-value=30 Score=32.34 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHh
Q 008780 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (554)
+.|...|++|++....+.|.+ .++..+.+|.+..|+. +++.++|+..+++|+.
T Consensus 173 e~a~~aY~~A~~iA~~L~pth--------PirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTH--------PIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578889999998764466665 3456677788877776 7999999999888764
No 347
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.61 E-value=1.1e+02 Score=29.27 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=56.8
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHH-HHHHhhccCCCChhHHHHHhhhHH------------HHHHHHHHHHHHcc
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEK-VLRDFNHVNPQDDEEGKVFVGKRN------------LLHLNVAACLLKLG 461 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~-al~~l~~~~p~~~ee~~~~~~~~~------------~~~~nla~~~~kl~ 461 (554)
.+.-+.++...+.+.++++|++|+..... |+..++. ........+--+.. ....++..++....
T Consensus 30 YEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~---~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 30 YEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKA---KQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC---CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 34456677788888888889888887544 4443322 11111000000000 01112222222211
Q ss_pred C--------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008780 462 E--------CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505 (554)
Q Consensus 462 ~--------~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~ 505 (554)
. ..+|+.+..+.=...-.++..|..+|..+...+++.+|..+|-
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 0 2233333332212223578889999999999999999998774
No 348
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=55.51 E-value=48 Score=25.34 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhhhhhhhc---CCHHHHHHHHHHHHHHhhc---cC-CCChhHHHHHhhhHHHHHHHHHHHHHHc
Q 008780 394 IMDEAEKIRVTGNRLFKE---GKFELAKAKYEKVLRDFNH---VN-PQDDEEGKVFVGKRNLLHLNVAACLLKL 460 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~---g~~~~A~~~Y~~al~~l~~---~~-p~~~ee~~~~~~~~~~~~~nla~~~~kl 460 (554)
..+.|-.+.++|-..=.. |+-++|+..|++.+..|.. +. ....+.++..+.+......||..+--++
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL 85 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777666666 8889999999999887654 11 2244567777777777777776665443
No 349
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=55.31 E-value=47 Score=30.31 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=49.6
Q ss_pred HHHHHHhhhhh-----hhcCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHH
Q 008780 398 AEKIRVTGNRL-----FKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEAC 470 (554)
Q Consensus 398 a~~~~~~G~~~-----~~~g~~~~A~~~Y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~ 470 (554)
+-.+|-+|..+ |..|+-+.|...|+.|.+.... +.|.+ .++..+.+|.+..|+. +++.++|+..+
T Consensus 120 VFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pth--------PirLGLaLNfSVFyYEIln~p~~Ac~lA 191 (227)
T 2o8p_A 120 FFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIE--------QLPLGFIQNLAYILSEKYGEKKQVFNML 191 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGG--------GSCHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCC--------hHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 33445555433 3566688999999999986543 44443 3446677888877664 78899999999
Q ss_pred HHHHhh
Q 008780 471 NKVLDA 476 (554)
Q Consensus 471 ~~al~~ 476 (554)
++|+..
T Consensus 192 k~Afd~ 197 (227)
T 2o8p_A 192 NSLGKI 197 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999763
No 350
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=53.88 E-value=52 Score=24.53 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=28.7
Q ss_pred CChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc
Q 008780 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (554)
Q Consensus 389 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~ 430 (554)
|+..+.. .....|..+...|+|+.|+.+|+.++..++.
T Consensus 7 ~~~~~i~----e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 7 MSLQMIV----ENVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp SSSHHHH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH----HHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 4544443 3446777888899999999999999987654
No 351
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=53.38 E-value=40 Score=31.03 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHh
Q 008780 415 ELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~-~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (554)
+.|...|++|++... .+.|.+ .++..+.+|.+..|+. +++.++|+..+++|+.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pth--------PirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTH--------PIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578889999998764 466766 3456677788877776 7999999998888763
No 352
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.59 E-value=52 Score=33.47 Aligned_cols=72 Identities=10% Similarity=-0.027 Sum_probs=54.3
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 397 ~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
..+.+..+...++..++|.+|...++++........+ . ..+....+...|..+...++|.+|..+|.+++.-
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-~-------~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK-Y-------ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-c-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555667788888999999999999998643322222 2 2345677888899999999999999999988754
No 353
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.15 E-value=34 Score=34.66 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
.++..+|..|.+.|++..|++.+.++..... .-...++..-+++...++|..|...+.+|..+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3678899999999999999999999887642 34678888999999999999999999999876
No 354
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=51.09 E-value=96 Score=35.24 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DKSSEPDATA 520 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--~P~~~~~~~~ 520 (554)
...|+-+-.+|.+.|+.++|...+.+.-+. -.-+...|--+-..|...|++++|.+.|++..+. .|+- .....
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv-vTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL-LSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-HHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-HHHHH
Confidence 456777888999999999999999764432 2337889999999999999999999999998874 6763 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008780 521 ALSKLKKQRQVKLKVRLENSLKGCLT 546 (554)
Q Consensus 521 ~l~~l~~~~~~~~~~~~~~~y~~~f~ 546 (554)
.+.-+-+..+..+.+. ..|+.|-.
T Consensus 206 LI~glcK~G~~~e~A~--~Ll~EM~~ 229 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIE--RCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHTCCHHHHH--HHHHHHHH
T ss_pred HHHHHHhCCCcHHHHH--HHHHHHHH
Confidence 4544433222122222 45555543
No 355
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.13 E-value=24 Score=28.49 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHH
Q 008780 462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS---SEPDATAALSKLKKQRQ 530 (554)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~---~~~~~~~~l~~l~~~~~ 530 (554)
.|++|..+..++|.+|.. |.-...+.-|...+..|.+++.+..+ .....|.....++.++.
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~ 81 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMK 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 468888888888888751 44444444555666777777877553 11234555555555554
No 356
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=49.04 E-value=50 Score=30.87 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Q 008780 415 ELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVL 474 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~-~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al 474 (554)
+.|...|++|..... .+.|.+ .++..+.+|.+..|+. +++.++|+..+++|+
T Consensus 152 e~a~~aY~~A~~iA~~~L~pth--------PirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTH--------PIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 578889999998764 467766 3456677888877776 799999999998876
No 357
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=48.78 E-value=52 Score=30.49 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHh
Q 008780 414 FELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~-~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (554)
-+.|...|++|.+... .+.|.+ .++..+.+|.+..|+. +++.++|+..+++|+.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pth--------PirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTH--------PIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678889999988654 466766 3456677788777665 7899999998888753
No 358
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.49 E-value=60 Score=23.81 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC
Q 008780 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~ 435 (554)
+-..-....+.|..+..+|++++|+.+|-+|+. ..|.-
T Consensus 13 ~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~----Vc~qP 50 (73)
T 3ax2_A 13 VQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIA----VCGQP 50 (73)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCSSC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HcCCH
Confidence 333444557899999999999999999999999 55554
No 359
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.01 E-value=49 Score=24.29 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008780 486 RRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 486 ~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 514 (554)
.+|..+...|++++|..+|-+|+..-|+-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 36777777777777777777777777664
No 360
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=47.00 E-value=58 Score=30.41 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHh
Q 008780 415 ELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (554)
Q Consensus 415 ~~A~~~Y~~al~~l~-~~~p~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (554)
+.|...|++|.+... .+.|.+ .++..+.+|.+..|+. +++.++|+..+++|+.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pTh--------PirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTH--------PIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567889999988653 466665 3456677788777766 7889999988888753
No 361
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=45.70 E-value=4.4 Score=37.97 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~ 431 (554)
.....|..+..+|..+=+.|+|.+|+.+|..|+++|...
T Consensus 18 p~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 18 PQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp ---------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345678888899999999999999999999999987553
No 362
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=44.35 E-value=61 Score=29.78 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHh
Q 008780 414 FELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLL-KLGECRKSIEACNKVLD 475 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~-~~~p~~~ee~~~~~~~~~~~~~nla~~~~-kl~~~~~A~~~~~~al~ 475 (554)
-+.|...|++|.+... .+.|.+ .++..+.+|.+..|+ -+++.++|+..+++|+.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pth--------PirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTN--------PIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678889999988654 466766 345567778777766 46899999998888753
No 363
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=43.71 E-value=1.8e+02 Score=28.72 Aligned_cols=111 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhhhhcC------------CHHHHHHHHHHHHHHhhcc-------------CCCChhHHHHHhhhHHH
Q 008780 394 IMDEAEKIRVTGNRLFKEG------------KFELAKAKYEKVLRDFNHV-------------NPQDDEEGKVFVGKRNL 448 (554)
Q Consensus 394 ~~~~a~~~~~~G~~~~~~g------------~~~~A~~~Y~~al~~l~~~-------------~p~~~ee~~~~~~~~~~ 448 (554)
.++.+..+.+.|-.+.+.+ ....|...|++|..+++.+ .+.| +......
T Consensus 110 ~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~D------ls~~~l~ 183 (376)
T 3r9m_A 110 VFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRD------LESRLIE 183 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTST------TSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc------cCHHHHH
Q ss_pred HHHHHHHHHHHccCHHHHHH-----------------HHHHHHhhCCCC--------------------hHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIE-----------------ACNKVLDANPAH--------------------VKGLYRRGMAY 491 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~-----------------~~~~al~~~p~~--------------------~ka~~~~g~a~ 491 (554)
++.+++.+..+.--|.+|+. +|.+|...-... +.|+|+.|..+
T Consensus 184 ~L~~l~LAQAQE~~~~Kai~~~~k~~liAKLa~q~~~~Y~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~ 263 (376)
T 3r9m_A 184 AYVIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETL 263 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 008780 492 MALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 492 ~~l~~~~~A~~~~~~al~l 510 (554)
...+++-+|+..|+.|.+.
T Consensus 264 ~~~~k~GeaIa~L~~A~~~ 282 (376)
T 3r9m_A 264 LASDKCGEAIRSLQEAEKL 282 (376)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHH
No 364
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=42.54 E-value=52 Score=29.46 Aligned_cols=53 Identities=11% Similarity=-0.023 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHH-----HHHHHHHHHcCCHH
Q 008780 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL-----YRRGMAYMALGEFE 498 (554)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~-----~~~g~a~~~l~~~~ 498 (554)
.+..++.+|..++-.++|.+|..++..|+...|...... -.+--+.+.+|++.
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 477888999999999999999999999999988654433 23333445567754
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.29 E-value=37 Score=38.39 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 509 (554)
++..++..++++- ..+.+..-|.++-.-|-+|+++..+|++++|..+|++|-.
T Consensus 816 l~~~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3344455666654 3445667788888889999999999999999999998763
No 366
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=38.57 E-value=44 Score=22.82 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhh
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~ 429 (554)
..+.+..|+.+-..+.....-.+...|++..++||++|.
T Consensus 13 ~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 13 RASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHh
Confidence 455678888888889999999999999999999999764
No 367
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=38.14 E-value=63 Score=32.80 Aligned_cols=96 Identities=5% Similarity=-0.015 Sum_probs=56.5
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCC------h--hH-HHHHhhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 008780 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD------D--EE-GKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (554)
Q Consensus 400 ~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~------~--ee-~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (554)
-+...++.+...++|.+|.-++......+. .++.. . .- .....+....++...+..+.+-+.|+.|+..|
T Consensus 37 ~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~-w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~ 115 (436)
T 2yin_A 37 YLYKLRDLHLDCDNYTEAAYTLLLHTWLLK-WSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLC 115 (436)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-SSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHhC-CCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345678899999999999999865554321 11110 0 00 00011222345666666777778899999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCC
Q 008780 471 NKVLDANPAHVKGLYRRGMAYMALGE 496 (554)
Q Consensus 471 ~~al~~~p~~~ka~~~~g~a~~~l~~ 496 (554)
+.++..-..+..-|-.++.+|..+.+
T Consensus 116 k~L~~~yE~~~~Dy~~Ls~~~~~~a~ 141 (436)
T 2yin_A 116 KELAEQYEMEIFDYELLSQNLIQQAK 141 (436)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876544333345555666655443
No 368
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=37.59 E-value=71 Score=24.76 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=31.3
Q ss_pred ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHH
Q 008780 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (554)
Q Consensus 390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~ 427 (554)
+.+++-..-......|..++.+|+++.|+.+|-+|+..
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~V 49 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAV 49 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45555555666789999999999999999999999984
No 369
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=37.14 E-value=50 Score=33.45 Aligned_cols=102 Identities=14% Similarity=-0.022 Sum_probs=60.2
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhc------cCCCChhHH-----------H--H---------HhhhHHHHH
Q 008780 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH------VNPQDDEEG-----------K--V---------FVGKRNLLH 450 (554)
Q Consensus 399 ~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~------~~p~~~ee~-----------~--~---------~~~~~~~~~ 450 (554)
.-+..+++.+.+.++|.+|.-++..+..++.. ..+++.+.. . . ....+..++
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll 91 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELL 91 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHH
Confidence 44677888999999999999998754432211 222221110 0 0 011122355
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008780 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501 (554)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~ 501 (554)
...+.++.+-+.|+.|+..|+.++..-..+ .-|-.++.+|..+.++-+.+
T Consensus 92 ~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~-~dy~~Ls~~~~~~a~~y~~I 141 (428)
T 2wm9_A 92 EQCADGLWKAERYELIADIYKLIIPIYEKR-RDFERLAHLYDTLHRAYSKV 141 (428)
T ss_dssp HHHHHHHHHTTCGGGHHHHHTTTHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH
Confidence 555666677788999999998887654322 34556777776665443333
No 370
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=36.75 E-value=67 Score=30.08 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhh-cc--CCCChhHHHHHhhhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhh
Q 008780 414 FELAKAKYEKVLRDFN-HV--NPQDDEEGKVFVGKRNLLHLNVAACLL-KLGECRKSIEACNKVLDA 476 (554)
Q Consensus 414 ~~~A~~~Y~~al~~l~-~~--~p~~~ee~~~~~~~~~~~~~nla~~~~-kl~~~~~A~~~~~~al~~ 476 (554)
-+.|...|++|.+... .+ .|.+ .++..+.+|.+..|+ -+++.++|+..+++|+..
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pTh--------PiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSD--------PLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGC--------HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3667888999887653 34 4544 345667778888777 478899999998888754
No 371
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=35.54 E-value=1e+02 Score=24.82 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhCCCC
Q 008780 500 AQRDFEMMMKVDKSS 514 (554)
Q Consensus 500 A~~~~~~al~l~P~~ 514 (554)
|++.|..+++..+.+
T Consensus 44 Aie~l~~alk~e~~~ 58 (117)
T 2cpt_A 44 AVQYFLHVVKYEAQG 58 (117)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhccCC
Confidence 444566666666555
No 372
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=35.40 E-value=2e+02 Score=28.10 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 481 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
+.|+|+.|......+++-+|+..|+.|.+.
T Consensus 252 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~ 281 (363)
T 3rau_A 252 AVAHLHMGKQAEEQQKFGERVAYFQSALDK 281 (363)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence 446788888888889999999988777653
No 373
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=35.32 E-value=1.5e+02 Score=22.60 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008780 484 LYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (554)
Q Consensus 484 ~~~~g~a~~~l~~~~~A~~~~~~al~l~ 511 (554)
+...|.-++..++|.+|...|+++..+.
T Consensus 56 ~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 56 LIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 3334444555555555555555555443
No 374
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.22 E-value=93 Score=27.73 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008780 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 483 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 513 (554)
-+|.+|+.++..++|.+|..+|..|++.-|.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 3455555555555555555555555555443
No 375
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.40 E-value=1.9e+02 Score=29.96 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (554)
-+.+.-+.-.|..+.-+++|.+|..++..|++ ..|.+... ...+..++-.+..|.+-+|+..+--.
T Consensus 267 ~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r----kap~~~~a----~gfr~~a~K~lI~V~LLlG~iP~r~l------ 332 (523)
T 4b4t_S 267 SLEARYFFYLSKINAIQLDYSTANEYIIAAIR----KAPHNSKS----LGFLQQSNKLHCCIQLLMGDIPELSF------ 332 (523)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS----SCSCSSSC----SHHHHHHHHHHHHHHHHHTCCCCHHH------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCcchhh----hhHHHHHHHHHHhHHhhcCCCCChHH------
Confidence 34577788899999999999999999999998 55543110 11234455555666666777554211
Q ss_pred hhCCCC---hHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Q 008780 475 DANPAH---VKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKS 513 (554)
Q Consensus 475 ~~~p~~---~ka~~~~g~a~~~--l~~~~~A~~~~~~al~l~P~ 513 (554)
-..+.. ...|+.+.+|+.. +..|+.++..++..+.-+-.
T Consensus 333 f~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgt 376 (523)
T 4b4t_S 333 FHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDT 376 (523)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred hhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCCh
Confidence 112322 3447777777654 33556666666666666643
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.28 E-value=46 Score=38.44 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=40.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 508 (554)
.++.++++.++++-|.. .+..-|.++..-|-+|.++...|++++|..+|++|-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 34455556666655443 445667888888999999999999999999999874
No 377
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.06 E-value=2.1e+02 Score=32.13 Aligned_cols=63 Identities=10% Similarity=-0.103 Sum_probs=47.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh-hC--------------------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLD-AN--------------------PA--HVKGLYRRGMAYMALGEFEEAQRDFEM 506 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~-~~--------------------p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~ 506 (554)
-+-+|.||+.+|++++|..++.+|-. +. +. ....|+.....+...+-|+-++...+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 46799999999999999999988641 11 11 122455667888888999999999999
Q ss_pred HHHhCC
Q 008780 507 MMKVDK 512 (554)
Q Consensus 507 al~l~P 512 (554)
|++.-.
T Consensus 923 AI~~~~ 928 (950)
T 4gq2_M 923 ADASKE 928 (950)
T ss_dssp HHHTCC
T ss_pred HHhhcc
Confidence 998543
No 378
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=32.37 E-value=1.6e+02 Score=25.33 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008780 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (554)
Q Consensus 464 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l 525 (554)
..|...+..+..++|......-++..++..+.+....+..|...+..||..-..+...|..+
T Consensus 73 ~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l 134 (175)
T 4abx_A 73 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSAL 134 (175)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34555555555677777777888888999888888888777777777875323344434333
No 379
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=31.49 E-value=1.7e+02 Score=29.03 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008780 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~~~~~~al~l 510 (554)
.|+|+.|..+...+++-+|+..++.|.+.
T Consensus 258 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~~ 286 (392)
T 1zb1_A 258 LSAYYHGLHLEEENRVGEAIAFLDFSMQQ 286 (392)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 36777788888889999999999888753
No 380
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.91 E-value=2.3e+02 Score=24.19 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=43.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCC------hHHHHH-HHHH--HHHcCCHHHHHHHHHHHHHh
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANPAH------VKGLYR-RGMA--YMALGEFEEAQRDFEMMMKV 510 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p~~------~ka~~~-~g~a--~~~l~~~~~A~~~~~~al~l 510 (554)
..+..++..++|-+|-+.++.+-...+.. .+++.. +|.+ +...|+..-|...+.+|+..
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34555666799999999998888776554 445555 4444 44579999999999999883
No 381
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=30.23 E-value=71 Score=34.36 Aligned_cols=50 Identities=24% Similarity=0.160 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l~~~ 497 (554)
......|...+..|+|.-|...++.++..+|+|..|...++.+|.++|.-
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 34566788888999999999999999999999999999999999988743
No 382
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=30.23 E-value=98 Score=33.25 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008780 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (554)
Q Consensus 480 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (554)
-..+...+|+..+..|+|..|...+..++..+|+| .+++.++...-+++.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~-~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDN-RAARELQADALEQLG 497 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHH
Confidence 46678889999999999999999999999999999 678887777666665
No 383
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=30.03 E-value=0.17 Score=51.99 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=48.9
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCh
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ 481 (554)
...|..+|..|.|+.|.-+|...-. |..||.|+.++++|..|++.+++| +|+
T Consensus 148 q~VGDrcf~e~lYeAAKilys~isN-----------------------~akLAstLV~L~~yq~AVdaArKA-----ns~ 199 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNVSN-----------------------FGRLASTLVHLGEYQAAVDGARKA-----NST 199 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGSCC-----------------------CTTTSSSSSSCSGGGSSTTTTTTC-----CSS
T ss_pred HHHHHHHHHccCHHHHHHHHHhCcc-----------------------HHHHHHHHHHHHHHHHHHHHHHhc-----CCh
Confidence 3689999999999988877754222 234677788888888888777664 566
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 008780 482 KGLYRRGMAYMALGEFEEAQ 501 (554)
Q Consensus 482 ka~~~~g~a~~~l~~~~~A~ 501 (554)
+.|-....|+...++|..|.
T Consensus 200 ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTT
T ss_pred hHHHHHHHHHhCchHHHHHH
Confidence 66666666666555554443
No 384
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=29.16 E-value=55 Score=36.26 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCCCeEEEEEEEEEecCCCcEEEeccCC--C----------------------CCCCeEEEcCCCCchHHHHHHHhcCCc
Q 008780 287 LHDSLLCVHYKGMLLNEEKKVFYDTRVD--N----------------------DGQPLEFSSGEGLVPEGFEMCVRLMLP 342 (554)
Q Consensus 287 ~~~~~V~v~y~g~~~~~~g~~~~~t~~~--~----------------------~~~~~~f~lG~~~v~~g~~~~l~~M~~ 342 (554)
.+|+.|.|.|+..+..+++..-++.+-+ + ...-++|.+|.+.+.+-++.++..|..
T Consensus 562 ~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ies~~e~~fe~g~g~~~~~le~vV~qms~ 641 (950)
T 3htx_A 562 TNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVEPIESNEEIEFEVGTGSMNPHIESEVTQMTV 641 (950)
T ss_dssp CTTEEEEEEEEEEEEECC----------------------------CCCEEEEEEEEEEEEETTTCBCHHHHHHHTTCCT
T ss_pred CCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhhcccccHHHHHHHhcCCccchhhheeeeccc
Confidence 4799999999999876432211111100 0 123468999999999999999999999
Q ss_pred CcEEEEEe
Q 008780 343 GEIALVTC 350 (554)
Q Consensus 343 GE~~~~~i 350 (554)
|+...|..
T Consensus 642 gqT~~F~~ 649 (950)
T 3htx_A 642 GEYASFKM 649 (950)
T ss_dssp TCEEEEEE
T ss_pred cceeEEec
Confidence 99999885
No 385
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.95 E-value=1.8e+02 Score=21.65 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhCCCC
Q 008780 498 EEAQRDFEMMMKVDKSS 514 (554)
Q Consensus 498 ~~A~~~~~~al~l~P~~ 514 (554)
.+|++.|.++++..|+.
T Consensus 35 ~~aie~l~~~lk~e~d~ 51 (83)
T 2v6y_A 35 KKAIEVLSQIIVLYPES 51 (83)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 33445566666667654
No 386
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.45 E-value=1.9e+02 Score=25.64 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~ 491 (554)
+--..-..+++.|.|++|...+++.+.-++.+.+.-..+..+-
T Consensus 119 lk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 119 IKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3344455677888888888888888887777666444444333
No 387
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=28.10 E-value=4e+02 Score=25.40 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH----------------h---hCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 008780 448 LLHLNVAACLLKLGECRKSIEACNKVL----------------D---ANPAHVKGLYRRGM-AYMALGEFEEAQRDFEMM 507 (554)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al----------------~---~~p~~~ka~~~~g~-a~~~l~~~~~A~~~~~~a 507 (554)
.+|.-+|..|.+.+++.+|..++-..- . -.|.....+.-|+. -|..+++...|...|...
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 578899999999999999999774211 1 12222333444443 456789999999888766
Q ss_pred HH
Q 008780 508 MK 509 (554)
Q Consensus 508 l~ 509 (554)
.+
T Consensus 215 ~~ 216 (312)
T 2wpv_A 215 LE 216 (312)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 388
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=27.50 E-value=76 Score=26.73 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=39.0
Q ss_pred CCChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccCC
Q 008780 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433 (554)
Q Consensus 388 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p 433 (554)
..++...+..|..+...|..+...|+++.|.-.|-+++.++-...|
T Consensus 30 ~i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~Ip 75 (146)
T 2xze_A 30 DIPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLP 75 (146)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcc
Confidence 3467788999999999999999999999999999999887643333
No 389
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=27.29 E-value=79 Score=24.50 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=13.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCC
Q 008780 452 NVAACLLKLGECRKSIEACNKVLDANP 478 (554)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~~p 478 (554)
.+|..++..|+++.|+.++-+|+.+.|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 445555555555555555555544443
No 390
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.10 E-value=2.1e+02 Score=21.88 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 402 ~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
...|..+|..|+|-+|=+.++.+-. ..+. ++...+ ...+..-.|..+.+.|++ |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~----~~~~--~~~~~~---qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWL----KATG--EERRLL---QGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCCH--HHHHHH---HHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHh----hCCC--chHHHH---HHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3578889999999999888888766 3332 111111 233444555566667777 7777777765
No 391
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.02 E-value=91 Score=28.13 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=22.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008780 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (554)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~ 491 (554)
.-..+++.|.|++|...+++.+.-++.+-+.-..+..+-
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNII 158 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334455666677777766666666555544444444433
No 392
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=25.68 E-value=51 Score=27.18 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=29.0
Q ss_pred hHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 008780 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR 426 (554)
Q Consensus 395 ~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~ 426 (554)
++.|..+.+.|..++.+|+.-+|.+.|-+|..
T Consensus 4 l~lAe~yL~EA~ell~kGD~vQAsEK~ykAae 35 (129)
T 2jpu_A 4 STSAEVYYEEAEEFLSKGDLVQACEKYYKAAE 35 (129)
T ss_dssp SCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45688899999999999999999999999888
No 393
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.22 E-value=1.3e+02 Score=30.54 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..++.-+|.+|+-+++|++|+.+|++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 56778889999999999999999999985
No 394
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.50 E-value=2.2e+02 Score=21.20 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhCCCC
Q 008780 500 AQRDFEMMMKVDKSS 514 (554)
Q Consensus 500 A~~~~~~al~l~P~~ 514 (554)
|++.|..+++..|+.
T Consensus 45 aie~l~~alk~e~d~ 59 (83)
T 2w2u_A 45 AIEVLAQLVSLYRDG 59 (83)
T ss_dssp HHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHCCCH
Confidence 444566666666654
No 395
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.12 E-value=76 Score=32.68 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (554)
..++.-+|.+|+-+++|.+|+.+|++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 567788899999999999999999999853
No 396
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.87 E-value=61 Score=24.14 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=16.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 450 HLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
...+|.=|..+|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 44556666666777777776666554
No 397
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=23.81 E-value=4.5e+02 Score=24.54 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=69.2
Q ss_pred ChhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhccC---CCChhHHHHHhhhHHHHHHHHHHHH----HHccC
Q 008780 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDDEEGKVFVGKRNLLHLNVAACL----LKLGE 462 (554)
Q Consensus 390 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~~---p~~~ee~~~~~~~~~~~~~nla~~~----~kl~~ 462 (554)
+-+..+.+.--+.+........|+.+..+...+-.+..++++- ....+-...+....+.+++.++... ++.++
T Consensus 14 ~~~d~~sql~gly~msre~le~g~i~~sv~LLNGIIHECDRLLR~~e~~~~Lpd~FhAIYAlALl~lSELa~~a~Fk~ed 93 (346)
T 3qtm_A 14 TEEDNISQLWGLYEMSREKLENDDIDASVSLVFGTIHEADRILRNTEDISTLPKDFHAAYSSALLAVSELFEIAQKRLKE 93 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHHHHHHTHHHHGGGSCT
T ss_pred eccchHHHHHhHHHHHHHHhhccCchhhhHHHcChHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhHHHhhHHhhccCch
Confidence 3445566677788999999999999999999887776554321 1111112334444444443333322 33322
Q ss_pred -------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 008780 463 -------CRKSIEACNKVLDANPAHVKGLYRRGMAYMAL 494 (554)
Q Consensus 463 -------~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l 494 (554)
++.|++.|+--++..|++....+.+++++++.
T Consensus 94 e~~V~eFFDaALERielGLe~~p~s~~L~la~SKILlqr 132 (346)
T 3qtm_A 94 TNTEESYIDAAIERAQLGLDAPGNESRLFLALARAYLEK 132 (346)
T ss_dssp TCCHHHHHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHH
Confidence 78899999999999999999888888888753
No 398
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=23.33 E-value=1.3e+02 Score=22.71 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=31.4
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~ 427 (554)
.++.++.|..+.+.|..++++|++..|+.++.-|-..
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~Gw 64 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAW 64 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999988766553
No 399
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.25 E-value=1.4e+02 Score=30.33 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 008780 447 NLLHLNVAACLLKLGECRKSIEACNKVLD 475 (554)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (554)
..++.-+|.+|+-+++|.+|+..|++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 56777889999999999999999999985
No 400
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.09 E-value=17 Score=37.02 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHhhcc
Q 008780 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (554)
Q Consensus 393 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~~l~~~ 431 (554)
+.++.|..+..+|..+-+.|+|.+|+.+|..|++++...
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~ 44 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 44 (444)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 356678888899999999999999999999999987653
No 401
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.47 E-value=2.5e+02 Score=21.06 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=11.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHH
Q 008780 451 LNVAACLLKLGECRKSIEACNK 472 (554)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~ 472 (554)
...|.-.-+.|+|.+|+.+|..
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~ 41 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQE 41 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444455666666655544
No 402
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=22.38 E-value=1.5e+02 Score=22.52 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=30.0
Q ss_pred hhhhhHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 008780 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR 426 (554)
Q Consensus 391 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~Y~~al~ 426 (554)
.++.++.|..+.+.|..++++|++..|+.++.-|-.
T Consensus 32 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~G 67 (87)
T 2pmr_A 32 EEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHG 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788899999999999999999999888776544
No 403
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=22.11 E-value=2e+02 Score=19.86 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHH
Q 008780 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH-VKGLYRRGMAYMALGEFEEAQ 501 (554)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~-~ka~~~~g~a~~~l~~~~~A~ 501 (554)
++..+|..-.-+.+.++|...++ .|+..+.. .-+-..|...++..|+|++|+
T Consensus 8 lLAe~AL~~TG~HcH~EA~tIA~-~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 8 QLAELALAGTGHHCHQEAASIAD-WLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHH-HHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHccchHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 44455555556677777766544 45555553 345566788899999999986
No 404
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=22.09 E-value=1.2e+02 Score=22.56 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhCCC
Q 008780 500 AQRDFEMMMKVDKS 513 (554)
Q Consensus 500 A~~~~~~al~l~P~ 513 (554)
|+..|..+++..|+
T Consensus 39 aie~l~~a~k~e~~ 52 (85)
T 2v6x_A 39 GLDYLMLALKYEKN 52 (85)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCC
Confidence 33345555555654
Done!