Query 008781
Match_columns 554
No_of_seqs 392 out of 2679
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 16:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.1E-38 2.4E-43 351.6 48.3 447 58-521 190-767 (2102)
2 KOG0166 Karyopherin (importin) 100.0 8.2E-39 1.8E-43 308.7 32.7 373 58-519 110-487 (514)
3 PLN03200 cellulose synthase-in 100.0 6.6E-37 1.4E-41 337.7 46.9 436 57-520 144-682 (2102)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.7E-38 3.7E-43 283.3 23.7 384 57-525 114-503 (526)
5 KOG0166 Karyopherin (importin) 100.0 2.3E-34 5E-39 278.0 31.0 363 59-480 68-439 (514)
6 KOG4224 Armadillo repeat prote 100.0 3.2E-35 6.9E-40 264.7 19.8 377 103-536 84-464 (550)
7 KOG4224 Armadillo repeat prote 100.0 4.7E-34 1E-38 257.1 23.3 388 76-520 98-495 (550)
8 COG5064 SRP1 Karyopherin (impo 100.0 2.1E-33 4.5E-38 250.8 22.4 372 54-480 68-446 (526)
9 PF05804 KAP: Kinesin-associat 100.0 2.7E-24 5.8E-29 220.5 40.2 381 78-521 264-652 (708)
10 PF05804 KAP: Kinesin-associat 99.9 8.1E-25 1.8E-29 224.2 33.0 356 62-480 291-652 (708)
11 KOG2122 Beta-catenin-binding p 99.9 1.5E-21 3.2E-26 202.9 22.3 324 82-406 213-604 (2195)
12 KOG4500 Rho/Rac GTPase guanine 99.9 4.5E-20 9.9E-25 170.8 26.4 428 78-520 57-521 (604)
13 KOG1048 Neural adherens juncti 99.8 1.5E-19 3.2E-24 181.1 21.7 395 57-520 233-686 (717)
14 KOG2122 Beta-catenin-binding p 99.8 4.1E-18 9E-23 177.7 24.7 377 134-551 212-636 (2195)
15 PF10508 Proteasom_PSMB: Prote 99.8 1.4E-15 3.1E-20 155.2 38.6 398 76-521 51-465 (503)
16 KOG4199 Uncharacterized conser 99.8 9.4E-16 2E-20 138.1 32.1 342 82-478 78-445 (461)
17 KOG1048 Neural adherens juncti 99.8 2.2E-17 4.8E-22 165.7 23.7 325 158-520 234-643 (717)
18 KOG4199 Uncharacterized conser 99.8 3.8E-16 8.3E-21 140.6 29.0 309 78-409 122-450 (461)
19 KOG4500 Rho/Rac GTPase guanine 99.8 9.7E-16 2.1E-20 142.4 30.2 428 60-503 86-556 (604)
20 PF10508 Proteasom_PSMB: Prote 99.8 5.3E-15 1.2E-19 151.0 35.7 368 108-527 42-429 (503)
21 KOG1222 Kinesin associated pro 99.7 1.5E-15 3.2E-20 143.0 23.7 357 60-480 303-666 (791)
22 KOG1222 Kinesin associated pro 99.7 1.8E-13 3.9E-18 129.1 28.8 405 50-521 253-666 (791)
23 KOG1293 Proteins containing ar 99.6 4.8E-13 1E-17 131.4 25.0 395 76-520 22-535 (678)
24 PRK13800 putative oxidoreducta 99.6 1.4E-12 3.1E-17 142.9 30.7 278 102-515 619-896 (897)
25 PRK09687 putative lyase; Provi 99.6 4E-13 8.7E-18 125.9 21.0 254 158-515 24-279 (280)
26 PRK09687 putative lyase; Provi 99.6 1.1E-12 2.3E-17 123.1 22.5 255 104-474 23-279 (280)
27 PF04826 Arm_2: Armadillo-like 99.5 6.8E-13 1.5E-17 121.3 20.1 194 101-320 9-205 (254)
28 PF04826 Arm_2: Armadillo-like 99.5 2.4E-12 5.3E-17 117.7 22.2 191 59-278 14-205 (254)
29 cd00256 VATPase_H VATPase_H, r 99.5 1.5E-11 3.2E-16 119.8 26.9 347 157-520 53-427 (429)
30 PRK13800 putative oxidoreducta 99.5 1.6E-11 3.4E-16 134.8 28.9 265 74-474 632-896 (897)
31 KOG2171 Karyopherin (importin) 99.4 3.1E-10 6.7E-15 119.1 31.6 384 76-520 93-506 (1075)
32 KOG2023 Nuclear transport rece 99.4 1.1E-11 2.4E-16 121.5 19.1 355 105-520 129-551 (885)
33 KOG2171 Karyopherin (importin) 99.4 1.5E-10 3.3E-15 121.3 28.0 393 58-507 115-535 (1075)
34 KOG2023 Nuclear transport rece 99.4 6.9E-11 1.5E-15 116.1 23.5 315 157-520 128-507 (885)
35 cd00020 ARM Armadillo/beta-cat 99.4 9.6E-12 2.1E-16 102.3 14.7 119 244-362 2-120 (120)
36 cd00020 ARM Armadillo/beta-cat 99.4 1.1E-11 2.5E-16 101.9 14.3 118 202-319 2-119 (120)
37 PF01602 Adaptin_N: Adaptin N 99.4 2E-10 4.2E-15 120.6 25.4 385 76-522 55-448 (526)
38 KOG0168 Putative ubiquitin fus 99.4 9.6E-10 2.1E-14 111.1 28.2 245 76-343 181-436 (1051)
39 PF01602 Adaptin_N: Adaptin N 99.4 3.1E-10 6.7E-15 119.1 26.2 402 62-521 80-486 (526)
40 cd00256 VATPase_H VATPase_H, r 99.4 1.1E-09 2.3E-14 107.0 27.7 320 57-402 53-424 (429)
41 KOG1293 Proteins containing ar 99.3 4.4E-10 9.4E-15 111.0 21.9 385 131-521 24-493 (678)
42 KOG1241 Karyopherin (importin) 99.3 4.1E-09 8.9E-14 105.6 26.1 466 54-554 165-699 (859)
43 KOG2160 Armadillo/beta-catenin 99.2 1.2E-09 2.6E-14 101.4 19.7 192 68-278 88-282 (342)
44 KOG1241 Karyopherin (importin) 99.2 7.3E-09 1.6E-13 103.9 26.1 404 59-521 33-480 (859)
45 PTZ00429 beta-adaptin; Provisi 99.2 1.8E-07 3.9E-12 98.7 34.6 386 76-521 81-474 (746)
46 KOG3678 SARM protein (with ste 99.2 1.6E-09 3.5E-14 102.5 17.1 294 201-540 174-475 (832)
47 KOG2160 Armadillo/beta-catenin 99.1 9.7E-09 2.1E-13 95.5 19.8 187 180-367 98-287 (342)
48 KOG0946 ER-Golgi vesicle-tethe 99.1 1.9E-07 4.1E-12 94.3 30.1 289 106-414 24-358 (970)
49 PTZ00429 beta-adaptin; Provisi 99.1 3.7E-07 8.1E-12 96.4 33.1 368 103-522 31-437 (746)
50 KOG0168 Putative ubiquitin fus 99.1 3E-08 6.5E-13 100.6 23.5 219 55-302 209-437 (1051)
51 KOG2759 Vacuolar H+-ATPase V1 99.1 1.3E-07 2.9E-12 89.1 25.8 344 158-520 66-440 (442)
52 KOG0211 Protein phosphatase 2A 99.1 2.9E-08 6.2E-13 103.5 22.1 426 14-519 234-665 (759)
53 KOG0946 ER-Golgi vesicle-tethe 99.0 1.2E-06 2.7E-11 88.6 30.4 332 56-413 21-410 (970)
54 KOG2973 Uncharacterized conser 99.0 5.2E-08 1.1E-12 87.9 18.7 301 210-526 6-323 (353)
55 PF03224 V-ATPase_H_N: V-ATPas 99.0 2.7E-08 5.9E-13 96.0 18.1 227 157-393 55-304 (312)
56 PF03224 V-ATPase_H_N: V-ATPas 99.0 2.2E-08 4.7E-13 96.7 17.1 226 251-510 57-306 (312)
57 KOG2759 Vacuolar H+-ATPase V1 99.0 4.6E-07 1E-11 85.6 25.0 318 57-403 65-438 (442)
58 KOG3678 SARM protein (with ste 99.0 3.9E-08 8.5E-13 93.3 17.9 278 95-403 171-452 (832)
59 KOG4413 26S proteasome regulat 98.9 1.1E-06 2.4E-11 80.1 25.2 353 106-494 84-457 (524)
60 KOG0212 Uncharacterized conser 98.9 8.1E-08 1.8E-12 93.4 18.2 322 154-522 81-410 (675)
61 KOG1517 Guanine nucleotide bin 98.9 8.7E-08 1.9E-12 99.3 17.7 244 59-327 474-739 (1387)
62 KOG1062 Vesicle coat complex A 98.9 7E-06 1.5E-10 83.6 30.4 391 76-522 120-548 (866)
63 COG5215 KAP95 Karyopherin (imp 98.8 4.4E-06 9.6E-11 81.7 26.5 400 61-522 39-483 (858)
64 COG5215 KAP95 Karyopherin (imp 98.8 1.4E-05 3E-10 78.4 29.6 417 73-520 188-670 (858)
65 KOG4413 26S proteasome regulat 98.7 3.5E-06 7.6E-11 76.9 21.0 309 180-519 58-378 (524)
66 KOG1824 TATA-binding protein-i 98.7 8.2E-06 1.8E-10 84.4 25.8 422 59-521 566-1039(1233)
67 KOG1062 Vesicle coat complex A 98.7 2.9E-05 6.4E-10 79.2 28.9 296 158-519 104-415 (866)
68 KOG1059 Vesicle coat complex A 98.7 6E-06 1.3E-10 83.0 23.2 288 76-412 194-499 (877)
69 KOG0213 Splicing factor 3b, su 98.7 5.7E-06 1.2E-10 83.3 22.6 366 131-519 568-955 (1172)
70 KOG1242 Protein containing ada 98.7 1.8E-05 3.8E-10 79.0 25.6 346 105-520 97-446 (569)
71 KOG2973 Uncharacterized conser 98.7 6.7E-06 1.5E-10 74.6 20.4 242 159-416 5-286 (353)
72 KOG1059 Vesicle coat complex A 98.7 1.1E-05 2.5E-10 81.1 23.7 223 160-412 147-373 (877)
73 PF05536 Neurochondrin: Neuroc 98.7 0.00011 2.3E-09 75.9 31.8 242 106-363 7-262 (543)
74 KOG0212 Uncharacterized conser 98.6 1.8E-06 3.9E-11 84.3 17.5 353 103-518 83-444 (675)
75 PF14664 RICTOR_N: Rapamycin-i 98.6 6.5E-05 1.4E-09 73.5 28.0 315 145-475 13-362 (371)
76 KOG1517 Guanine nucleotide bin 98.6 1.1E-06 2.5E-11 91.3 16.1 227 133-367 487-737 (1387)
77 KOG0213 Splicing factor 3b, su 98.6 2.2E-05 4.8E-10 79.2 24.2 260 251-522 801-1069(1172)
78 KOG4646 Uncharacterized conser 98.6 1.1E-06 2.4E-11 69.3 10.7 132 56-212 15-146 (173)
79 TIGR02270 conserved hypothetic 98.5 3.3E-05 7.2E-10 76.4 23.3 243 158-519 55-297 (410)
80 PF05536 Neurochondrin: Neuroc 98.5 0.00013 2.7E-09 75.4 27.6 188 77-279 19-214 (543)
81 PF14664 RICTOR_N: Rapamycin-i 98.5 7.7E-05 1.7E-09 72.9 24.7 189 189-383 7-197 (371)
82 KOG1824 TATA-binding protein-i 98.5 0.00011 2.3E-09 76.5 26.3 437 55-519 125-681 (1233)
83 COG5181 HSH155 U2 snRNP splice 98.5 1.3E-05 2.8E-10 79.2 18.6 263 105-406 605-873 (975)
84 KOG1060 Vesicle coat complex A 98.5 0.00011 2.5E-09 74.8 25.2 360 107-523 38-463 (968)
85 KOG4646 Uncharacterized conser 98.5 1.7E-06 3.7E-11 68.3 9.5 135 157-300 16-150 (173)
86 KOG1242 Protein containing ada 98.4 0.00021 4.6E-09 71.5 25.8 343 105-518 135-483 (569)
87 KOG1789 Endocytosis protein RM 98.4 0.00017 3.8E-09 75.6 25.7 303 79-403 1741-2116(2235)
88 COG5181 HSH155 U2 snRNP splice 98.4 1.2E-06 2.7E-11 86.1 9.8 269 208-525 605-877 (975)
89 COG5369 Uncharacterized conser 98.4 6.3E-06 1.4E-10 80.1 12.9 259 135-401 408-739 (743)
90 TIGR02270 conserved hypothetic 98.3 0.00023 5.1E-09 70.5 23.2 211 106-405 88-298 (410)
91 COG5369 Uncharacterized conser 98.3 2.4E-06 5.1E-11 83.0 8.7 189 183-371 407-603 (743)
92 PF10165 Ric8: Guanine nucleot 98.3 7.2E-05 1.6E-09 75.5 19.1 273 83-364 1-339 (446)
93 KOG1789 Endocytosis protein RM 98.3 0.01 2.3E-07 63.0 34.0 424 80-521 1457-2079(2235)
94 KOG0211 Protein phosphatase 2A 98.3 0.00013 2.7E-09 76.9 20.7 391 53-519 232-626 (759)
95 KOG2734 Uncharacterized conser 98.2 0.0013 2.9E-08 62.9 24.3 266 82-363 103-401 (536)
96 KOG2734 Uncharacterized conser 98.2 0.00084 1.8E-08 64.3 22.8 234 185-420 104-366 (536)
97 KOG1061 Vesicle coat complex A 98.2 0.00013 2.7E-09 74.8 18.5 365 104-522 49-419 (734)
98 COG5240 SEC21 Vesicle coat com 98.2 0.0019 4.2E-08 63.9 25.6 352 76-521 203-558 (898)
99 KOG2259 Uncharacterized conser 98.2 6.1E-05 1.3E-09 75.3 15.3 188 210-407 201-406 (823)
100 KOG1240 Protein kinase contain 98.2 0.00012 2.7E-09 78.0 18.3 284 78-405 438-727 (1431)
101 KOG1240 Protein kinase contain 98.1 0.00026 5.7E-09 75.6 20.3 285 180-520 438-727 (1431)
102 COG1413 FOG: HEAT repeat [Ener 98.1 0.0024 5.3E-08 62.7 26.2 214 104-399 43-269 (335)
103 KOG1077 Vesicle coat complex A 98.1 0.00079 1.7E-08 68.1 22.0 271 131-425 126-418 (938)
104 KOG1060 Vesicle coat complex A 98.1 0.001 2.3E-08 68.2 23.0 308 160-519 38-351 (968)
105 KOG2259 Uncharacterized conser 98.1 0.00048 1E-08 69.1 20.0 215 162-401 203-473 (823)
106 PF10165 Ric8: Guanine nucleot 98.1 0.00055 1.2E-08 69.2 20.5 145 138-282 3-172 (446)
107 KOG0915 Uncharacterized conser 98.1 0.0014 3E-08 72.0 23.9 353 179-544 971-1368(1702)
108 COG5240 SEC21 Vesicle coat com 98.0 0.0057 1.2E-07 60.7 25.6 276 131-480 279-558 (898)
109 COG1413 FOG: HEAT repeat [Ener 98.0 0.002 4.2E-08 63.4 22.9 188 157-404 43-243 (335)
110 PF00514 Arm: Armadillo/beta-c 98.0 1.3E-05 2.7E-10 51.0 4.2 41 238-278 1-41 (41)
111 PF00514 Arm: Armadillo/beta-c 97.9 1.9E-05 4.2E-10 50.2 4.9 40 479-518 2-41 (41)
112 PF12348 CLASP_N: CLASP N term 97.9 4.9E-05 1.1E-09 70.1 9.3 184 301-521 17-209 (228)
113 PF12460 MMS19_C: RNAPII trans 97.9 0.0041 8.8E-08 62.8 23.5 360 106-520 1-396 (415)
114 PF12348 CLASP_N: CLASP N term 97.9 0.00014 3E-09 67.1 11.9 183 178-366 20-210 (228)
115 KOG1061 Vesicle coat complex A 97.9 0.0018 3.8E-08 66.7 20.1 348 134-523 32-384 (734)
116 COG5231 VMA13 Vacuolar H+-ATPa 97.9 0.002 4.4E-08 59.2 18.2 227 76-319 162-427 (432)
117 KOG1943 Beta-tubulin folding c 97.9 0.036 7.9E-07 59.5 29.5 257 249-519 341-612 (1133)
118 PF09759 Atx10homo_assoc: Spin 97.9 6.9E-05 1.5E-09 57.5 7.3 68 181-248 2-71 (102)
119 KOG1077 Vesicle coat complex A 97.8 0.028 6E-07 57.4 26.8 285 180-519 126-434 (938)
120 PF09759 Atx10homo_assoc: Spin 97.8 0.00013 2.7E-09 56.1 7.4 67 133-205 3-70 (102)
121 KOG0915 Uncharacterized conser 97.7 0.065 1.4E-06 59.7 28.8 414 80-521 974-1430(1702)
122 PF12460 MMS19_C: RNAPII trans 97.7 0.04 8.6E-07 55.7 26.2 338 78-479 17-396 (415)
123 PF13646 HEAT_2: HEAT repeats; 97.7 0.00033 7.2E-09 53.5 8.7 86 376-514 1-88 (88)
124 PF13646 HEAT_2: HEAT repeats; 97.7 0.00016 3.5E-09 55.2 6.9 86 209-316 1-88 (88)
125 COG5231 VMA13 Vacuolar H+-ATPa 97.7 0.0027 5.8E-08 58.4 15.3 259 256-519 156-429 (432)
126 KOG3036 Protein involved in ce 97.6 0.0068 1.5E-07 53.7 16.8 183 79-277 95-290 (293)
127 KOG0567 HEAT repeat-containing 97.6 0.0096 2.1E-07 53.5 17.7 212 131-401 51-278 (289)
128 PRK14707 hypothetical protein; 97.6 0.11 2.3E-06 59.9 29.5 411 79-513 306-734 (2710)
129 KOG0567 HEAT repeat-containing 97.5 0.018 3.9E-07 51.8 18.6 226 209-519 38-281 (289)
130 COG5096 Vesicle coat complex, 97.5 0.18 3.9E-06 53.4 29.1 160 131-319 35-194 (757)
131 KOG1078 Vesicle coat complex C 97.4 0.056 1.2E-06 56.1 23.0 270 131-476 260-531 (865)
132 PRK14707 hypothetical protein; 97.4 0.13 2.9E-06 59.2 27.4 413 63-499 165-593 (2710)
133 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00037 8.1E-09 47.6 5.4 55 462-516 1-55 (55)
134 PF08569 Mo25: Mo25-like; Int 97.4 0.048 1E-06 52.6 20.5 206 203-410 72-290 (335)
135 PF04078 Rcd1: Cell differenti 97.3 0.003 6.6E-08 57.1 11.3 182 77-276 64-260 (262)
136 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00021 4.5E-09 48.9 3.1 55 347-401 1-55 (55)
137 KOG1943 Beta-tubulin folding c 97.3 0.093 2E-06 56.5 23.4 257 103-403 340-611 (1133)
138 KOG1832 HIV-1 Vpr-binding prot 97.3 0.034 7.4E-07 58.2 19.3 339 132-488 369-784 (1516)
139 PF11841 DUF3361: Domain of un 97.3 0.0078 1.7E-07 50.4 12.3 134 97-242 4-137 (160)
140 PF06025 DUF913: Domain of Unk 97.3 0.013 2.7E-07 57.8 15.8 202 82-289 3-243 (379)
141 PF07814 WAPL: Wings apart-lik 97.2 0.036 7.8E-07 54.6 18.8 290 51-365 15-358 (361)
142 KOG2032 Uncharacterized conser 97.2 0.039 8.5E-07 54.2 18.2 254 256-518 265-531 (533)
143 KOG4535 HEAT and armadillo rep 97.2 0.021 4.5E-07 55.7 16.1 305 180-519 270-604 (728)
144 PF11841 DUF3361: Domain of un 97.2 0.014 3E-07 48.9 13.0 119 326-476 4-130 (160)
145 KOG1020 Sister chromatid cohes 97.2 0.62 1.4E-05 52.4 29.4 143 104-278 816-960 (1692)
146 smart00185 ARM Armadillo/beta- 97.2 0.0011 2.4E-08 42.0 5.1 39 480-518 3-41 (41)
147 PF08569 Mo25: Mo25-like; Int 97.1 0.074 1.6E-06 51.3 19.3 203 99-321 71-284 (335)
148 smart00185 ARM Armadillo/beta- 97.1 0.0012 2.5E-08 41.9 4.9 39 239-277 2-40 (41)
149 COG5096 Vesicle coat complex, 97.1 0.14 3.1E-06 54.2 22.4 161 181-363 36-196 (757)
150 PF13764 E3_UbLigase_R4: E3 ub 97.1 0.095 2.1E-06 56.3 20.9 234 98-341 111-384 (802)
151 KOG2062 26S proteasome regulat 97.0 0.074 1.6E-06 54.8 18.6 159 209-390 521-681 (929)
152 KOG1078 Vesicle coat complex C 97.0 0.14 3E-06 53.3 20.7 68 447-518 465-532 (865)
153 KOG3036 Protein involved in ce 97.0 0.21 4.5E-06 44.7 18.8 154 308-486 95-256 (293)
154 KOG4535 HEAT and armadillo rep 97.0 0.0083 1.8E-07 58.3 11.2 307 75-406 267-606 (728)
155 PF06025 DUF913: Domain of Unk 97.0 0.066 1.4E-06 52.8 18.0 193 184-387 3-209 (379)
156 KOG1991 Nuclear transport rece 97.0 0.31 6.8E-06 52.2 23.4 282 103-403 409-711 (1010)
157 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0043 9.3E-08 47.8 7.5 92 308-401 3-94 (97)
158 KOG1058 Vesicle coat complex C 97.0 0.11 2.4E-06 53.7 19.2 229 131-404 114-347 (948)
159 KOG4151 Myosin assembly protei 96.9 0.0071 1.5E-07 62.7 10.9 241 93-357 493-736 (748)
160 PF12717 Cnd1: non-SMC mitotic 96.9 0.096 2.1E-06 45.9 16.8 93 262-363 1-93 (178)
161 KOG1991 Nuclear transport rece 96.9 0.9 2E-05 48.9 28.1 395 75-500 430-873 (1010)
162 KOG1248 Uncharacterized conser 96.8 0.51 1.1E-05 51.7 23.2 224 130-363 668-899 (1176)
163 PF12717 Cnd1: non-SMC mitotic 96.7 0.16 3.4E-06 44.6 16.7 93 304-404 1-93 (178)
164 PF07814 WAPL: Wings apart-lik 96.7 0.17 3.6E-06 49.9 18.2 271 106-406 23-358 (361)
165 PF08045 CDC14: Cell division 96.7 0.031 6.8E-07 51.1 11.8 99 180-278 106-207 (257)
166 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0059 1.3E-07 48.3 6.2 75 446-520 41-117 (119)
167 PF08045 CDC14: Cell division 96.6 0.036 7.7E-07 50.7 11.7 102 79-197 107-210 (257)
168 PF05918 API5: Apoptosis inhib 96.6 0.74 1.6E-05 47.3 22.0 120 180-317 37-159 (556)
169 PF04078 Rcd1: Cell differenti 96.5 0.094 2E-06 47.7 13.8 226 262-516 8-260 (262)
170 PF05004 IFRD: Interferon-rela 96.5 0.27 5.9E-06 47.2 17.9 179 180-362 58-257 (309)
171 KOG4151 Myosin assembly protei 96.5 0.033 7.1E-07 58.0 12.0 204 145-362 492-699 (748)
172 KOG2274 Predicted importin 9 [ 96.5 0.66 1.4E-05 49.4 21.2 314 61-404 449-781 (1005)
173 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.015 3.2E-07 44.9 7.2 72 446-518 25-96 (97)
174 KOG1248 Uncharacterized conser 96.4 2 4.3E-05 47.4 28.7 182 217-405 664-858 (1176)
175 PF11698 V-ATPase_H_C: V-ATPas 96.4 0.0074 1.6E-07 47.8 5.5 71 208-278 44-115 (119)
176 KOG4653 Uncharacterized conser 96.3 0.15 3.3E-06 53.6 15.7 216 76-318 740-962 (982)
177 KOG1967 DNA repair/transcripti 96.3 0.04 8.6E-07 58.2 11.4 152 206-360 866-1022(1030)
178 KOG1058 Vesicle coat complex C 96.3 0.47 1E-05 49.4 18.6 238 77-365 220-466 (948)
179 KOG4464 Signaling protein RIC- 96.2 0.95 2.1E-05 43.7 18.6 154 55-218 43-198 (532)
180 KOG1832 HIV-1 Vpr-binding prot 96.1 0.23 5.1E-06 52.3 15.7 315 76-414 366-784 (1516)
181 PF12719 Cnd3: Nuclear condens 96.1 0.56 1.2E-05 45.0 17.6 170 104-303 26-209 (298)
182 KOG1967 DNA repair/transcripti 96.0 0.14 2.9E-06 54.4 13.6 150 249-401 867-1022(1030)
183 PF13764 E3_UbLigase_R4: E3 ub 96.0 1.4 3.1E-05 47.6 21.3 223 153-381 113-383 (802)
184 PF05004 IFRD: Interferon-rela 95.9 0.63 1.4E-05 44.7 16.9 180 77-278 57-257 (309)
185 KOG2999 Regulator of Rac1, req 95.9 0.17 3.7E-06 50.5 12.8 163 58-240 84-246 (713)
186 KOG1566 Conserved protein Mo25 95.7 1.2 2.6E-05 41.6 16.8 203 202-407 74-290 (342)
187 KOG4653 Uncharacterized conser 95.7 0.37 8.1E-06 50.8 14.9 212 131-360 742-962 (982)
188 PF02985 HEAT: HEAT repeat; I 95.6 0.02 4.4E-07 33.5 3.5 30 334-363 1-30 (31)
189 PF04063 DUF383: Domain of unk 95.6 0.18 3.9E-06 44.4 10.9 125 131-259 10-157 (192)
190 KOG2062 26S proteasome regulat 95.4 1.9 4.1E-05 45.1 18.3 132 333-517 519-652 (929)
191 PF11701 UNC45-central: Myosin 95.3 0.18 3.8E-06 43.1 9.7 147 104-275 3-156 (157)
192 PF02985 HEAT: HEAT repeat; I 95.3 0.039 8.5E-07 32.3 4.0 29 491-519 2-30 (31)
193 PF12719 Cnd3: Nuclear condens 95.3 0.49 1.1E-05 45.4 13.7 170 207-385 26-208 (298)
194 KOG2956 CLIP-associating prote 95.2 1.6 3.5E-05 43.1 16.5 173 180-362 302-477 (516)
195 KOG1243 Protein kinase [Genera 95.2 0.14 3E-06 52.8 9.9 187 204-401 327-513 (690)
196 KOG2274 Predicted importin 9 [ 95.2 5.6 0.00012 42.8 25.0 219 131-364 465-691 (1005)
197 KOG1020 Sister chromatid cohes 95.1 7.9 0.00017 44.2 25.5 143 249-401 816-958 (1692)
198 KOG3665 ZYG-1-like serine/thre 95.1 2.6 5.6E-05 45.4 19.7 181 314-511 494-690 (699)
199 PF04063 DUF383: Domain of unk 95.0 0.13 2.8E-06 45.3 8.1 126 344-498 6-156 (192)
200 KOG1243 Protein kinase [Genera 95.0 0.4 8.7E-06 49.6 12.4 229 97-361 286-514 (690)
201 PF14668 RICTOR_V: Rapamycin-i 94.9 0.16 3.6E-06 36.5 7.0 67 80-157 4-70 (73)
202 KOG0414 Chromosome condensatio 94.8 0.34 7.4E-06 53.0 11.8 163 105-303 920-1083(1251)
203 KOG2025 Chromosome condensatio 94.7 1.3 2.9E-05 45.9 15.2 129 180-317 61-190 (892)
204 PF11701 UNC45-central: Myosin 94.7 0.19 4.1E-06 42.9 8.1 146 251-401 5-157 (157)
205 COG5116 RPN2 26S proteasome re 94.5 0.58 1.2E-05 47.1 11.9 153 213-388 522-676 (926)
206 KOG0414 Chromosome condensatio 94.4 0.56 1.2E-05 51.4 12.3 163 158-345 920-1083(1251)
207 PF14668 RICTOR_V: Rapamycin-i 94.2 0.12 2.5E-06 37.2 4.8 66 350-415 4-70 (73)
208 COG5209 RCD1 Uncharacterized p 94.2 0.9 2E-05 40.1 11.0 151 78-244 115-275 (315)
209 PF05918 API5: Apoptosis inhib 94.2 1.2 2.7E-05 45.7 13.8 120 131-276 37-160 (556)
210 KOG2999 Regulator of Rac1, req 94.2 4.7 0.0001 40.8 17.1 156 107-279 86-243 (713)
211 PF12530 DUF3730: Protein of u 94.0 4.9 0.00011 36.9 17.8 196 75-304 13-216 (234)
212 KOG2137 Protein kinase [Signal 93.9 2.1 4.5E-05 44.7 14.9 232 131-390 288-524 (700)
213 KOG2137 Protein kinase [Signal 93.7 1.4 3E-05 46.0 13.3 138 329-504 385-523 (700)
214 PF06371 Drf_GBD: Diaphanous G 93.5 0.35 7.5E-06 42.8 7.9 91 145-235 95-186 (187)
215 KOG2956 CLIP-associating prote 93.5 4.6 0.0001 40.0 15.5 198 306-545 302-504 (516)
216 KOG1820 Microtubule-associated 93.2 2.7 5.9E-05 45.6 14.9 189 292-520 254-445 (815)
217 KOG2025 Chromosome condensatio 93.2 13 0.00028 39.1 19.3 105 103-232 84-189 (892)
218 COG5209 RCD1 Uncharacterized p 93.1 1.5 3.2E-05 38.8 10.5 145 134-283 118-272 (315)
219 KOG1820 Microtubule-associated 93.1 1.8 3.9E-05 47.0 13.4 175 76-278 266-443 (815)
220 KOG1566 Conserved protein Mo25 93.0 8.1 0.00017 36.3 21.0 223 244-499 74-310 (342)
221 KOG1788 Uncharacterized conser 92.9 18 0.00038 39.9 25.7 400 63-499 468-960 (2799)
222 PF14500 MMS19_N: Dos2-interac 92.5 6 0.00013 37.0 14.7 220 253-477 3-237 (262)
223 KOG2032 Uncharacterized conser 92.4 8.6 0.00019 38.5 15.8 147 156-308 253-404 (533)
224 PF10363 DUF2435: Protein of u 92.4 0.6 1.3E-05 35.5 6.5 71 210-282 6-76 (92)
225 KOG4464 Signaling protein RIC- 92.3 12 0.00026 36.6 19.2 154 210-364 48-233 (532)
226 COG5116 RPN2 26S proteasome re 92.1 1.5 3.3E-05 44.3 10.5 128 338-518 521-650 (926)
227 PF11865 DUF3385: Domain of un 92.1 2.8 6E-05 35.9 11.0 150 57-235 6-156 (160)
228 COG5656 SXM1 Importin, protein 92.1 6.4 0.00014 41.4 15.0 285 103-404 407-712 (970)
229 KOG2933 Uncharacterized conser 91.5 2.9 6.2E-05 39.1 10.8 140 292-475 89-232 (334)
230 PF06371 Drf_GBD: Diaphanous G 91.4 1.2 2.7E-05 39.2 8.6 79 240-319 98-186 (187)
231 PF12530 DUF3730: Protein of u 91.2 12 0.00026 34.4 15.8 161 180-362 16-189 (234)
232 PF11707 Npa1: Ribosome 60S bi 91.1 16 0.00035 35.6 19.0 158 251-408 58-242 (330)
233 COG5218 YCG1 Chromosome conden 91.1 2.1 4.6E-05 43.5 10.3 101 206-314 90-193 (885)
234 COG5098 Chromosome condensatio 91.0 6 0.00013 41.3 13.5 132 261-406 908-1040(1128)
235 KOG3665 ZYG-1-like serine/thre 91.0 2.4 5.2E-05 45.7 11.6 155 139-301 494-677 (699)
236 PF08506 Cse1: Cse1; InterPro 90.9 13 0.00028 36.9 15.7 159 140-315 194-370 (370)
237 PF08324 PUL: PUL domain; Int 90.8 2.2 4.7E-05 40.3 10.1 150 79-238 79-233 (268)
238 PF01347 Vitellogenin_N: Lipop 90.5 15 0.00032 39.5 17.4 201 105-356 396-616 (618)
239 KOG2933 Uncharacterized conser 90.5 2.1 4.5E-05 40.0 9.0 144 251-402 90-233 (334)
240 PF12031 DUF3518: Domain of un 90.4 0.61 1.3E-05 41.8 5.4 90 388-503 138-230 (257)
241 COG5218 YCG1 Chromosome conden 90.4 6.4 0.00014 40.2 12.8 119 234-363 78-197 (885)
242 KOG1949 Uncharacterized conser 90.3 5.8 0.00013 41.4 12.7 186 107-319 177-369 (1005)
243 KOG2611 Neurochondrin/leucine- 90.0 22 0.00049 35.6 18.9 185 131-320 26-225 (698)
244 KOG1525 Sister chromatid cohes 90.0 43 0.00092 38.7 24.4 149 332-519 258-406 (1266)
245 PF08324 PUL: PUL domain; Int 89.5 4.3 9.3E-05 38.2 11.0 148 131-283 78-236 (268)
246 PF08506 Cse1: Cse1; InterPro 88.7 27 0.00058 34.6 22.6 288 81-398 58-370 (370)
247 PF12231 Rif1_N: Rap1-interact 88.6 27 0.00059 34.7 18.8 262 126-402 56-351 (372)
248 KOG1992 Nuclear export recepto 88.6 36 0.00078 36.6 17.1 29 250-278 499-527 (960)
249 PF10363 DUF2435: Protein of u 88.4 1.2 2.5E-05 34.0 5.0 71 450-521 5-75 (92)
250 KOG1788 Uncharacterized conser 88.0 23 0.0005 39.1 15.5 260 85-362 664-982 (2799)
251 PF13251 DUF4042: Domain of un 87.6 14 0.0003 32.3 11.8 113 210-322 42-176 (182)
252 PF11864 DUF3384: Domain of un 87.5 37 0.00081 34.9 19.3 90 306-402 230-329 (464)
253 PF11864 DUF3384: Domain of un 87.3 39 0.00083 34.8 29.6 262 73-362 39-330 (464)
254 KOG0301 Phospholipase A2-activ 86.3 27 0.00058 36.6 14.4 167 214-385 551-727 (745)
255 PF13251 DUF4042: Domain of un 86.2 22 0.00048 31.0 13.5 159 349-522 2-178 (182)
256 PF14726 RTTN_N: Rotatin, an a 85.8 6.3 0.00014 30.3 7.7 67 447-513 29-95 (98)
257 KOG0413 Uncharacterized conser 85.7 62 0.0013 35.7 19.4 69 448-521 1006-1076(1529)
258 PRK09169 hypothetical protein; 85.6 97 0.0021 37.9 27.6 80 134-221 224-304 (2316)
259 KOG0413 Uncharacterized conser 85.6 5.6 0.00012 43.1 9.6 130 126-278 941-1073(1529)
260 PF12031 DUF3518: Domain of un 85.4 1.8 3.9E-05 38.9 5.2 85 130-221 138-230 (257)
261 PF11707 Npa1: Ribosome 60S bi 85.2 39 0.00085 32.9 21.8 158 209-366 58-241 (330)
262 PF08167 RIX1: rRNA processing 85.1 3 6.6E-05 35.9 6.5 82 332-414 24-108 (165)
263 smart00638 LPD_N Lipoprotein N 85.1 57 0.0012 34.7 20.4 162 159-354 395-570 (574)
264 smart00638 LPD_N Lipoprotein N 84.7 52 0.0011 35.0 17.0 70 334-403 394-475 (574)
265 PF12830 Nipped-B_C: Sister ch 84.7 13 0.00028 32.8 10.4 145 158-321 9-168 (187)
266 PF14726 RTTN_N: Rotatin, an a 84.2 8.1 0.00017 29.7 7.6 68 331-398 28-95 (98)
267 PF01347 Vitellogenin_N: Lipop 84.2 24 0.00052 37.9 14.4 198 158-398 396-617 (618)
268 PF12830 Nipped-B_C: Sister ch 83.7 28 0.0006 30.7 12.1 72 207-283 8-79 (187)
269 COG5656 SXM1 Importin, protein 83.2 70 0.0015 34.2 25.7 297 79-404 432-758 (970)
270 cd03569 VHS_Hrs_Vps27p VHS dom 82.3 22 0.00049 29.6 10.3 95 175-278 18-114 (142)
271 cd03561 VHS VHS domain family; 82.1 25 0.00054 29.0 10.5 94 176-278 15-112 (133)
272 PF08167 RIX1: rRNA processing 82.1 22 0.00049 30.5 10.6 109 250-362 26-143 (165)
273 KOG2676 Uncharacterized conser 81.6 1.9 4E-05 40.9 3.9 63 185-247 376-440 (478)
274 KOG2011 Sister chromatid cohes 80.8 77 0.0017 35.6 16.1 138 343-518 297-435 (1048)
275 PF04869 Uso1_p115_head: Uso1 80.7 56 0.0012 31.5 14.3 121 180-300 53-208 (312)
276 KOG1949 Uncharacterized conser 80.3 86 0.0019 33.4 20.8 191 246-475 126-329 (1005)
277 cd03568 VHS_STAM VHS domain fa 80.2 11 0.00024 31.6 7.8 94 176-278 15-110 (144)
278 PRK09169 hypothetical protein; 79.7 1.6E+02 0.0035 36.2 28.3 108 131-246 179-287 (2316)
279 PLN03076 ARF guanine nucleotid 79.7 1.4E+02 0.0031 36.2 18.9 132 131-276 1152-1297(1780)
280 PF10521 DUF2454: Protein of u 79.3 26 0.00057 33.2 11.1 71 207-277 119-202 (282)
281 cd03567 VHS_GGA VHS domain fam 79.1 36 0.00077 28.3 10.4 96 174-278 14-116 (139)
282 PF12231 Rif1_N: Rap1-interact 78.2 76 0.0016 31.6 21.5 289 52-361 30-351 (372)
283 PF08216 CTNNBL: Catenin-beta- 76.8 20 0.00043 28.1 7.5 41 467-507 65-105 (108)
284 KOG2611 Neurochondrin/leucine- 75.8 94 0.002 31.4 18.6 134 252-388 14-166 (698)
285 PF10274 ParcG: Parkin co-regu 74.7 46 0.00099 29.0 10.1 74 333-406 38-112 (183)
286 PF13001 Ecm29: Proteasome sta 74.1 65 0.0014 33.6 13.1 168 180-362 252-443 (501)
287 PF11865 DUF3385: Domain of un 73.7 38 0.00083 28.9 9.5 140 375-518 11-157 (160)
288 cd03561 VHS VHS domain family; 72.3 27 0.00059 28.7 8.1 73 292-364 38-114 (133)
289 KOG0891 DNA-dependent protein 72.2 1.1E+02 0.0024 38.1 15.6 199 203-403 561-763 (2341)
290 KOG1848 Uncharacterized conser 71.5 92 0.002 35.9 13.6 93 180-277 857-957 (1610)
291 PF10521 DUF2454: Protein of u 71.0 42 0.00091 31.9 10.1 70 250-319 120-202 (282)
292 KOG1992 Nuclear export recepto 70.7 1.7E+02 0.0036 32.0 21.2 336 163-521 294-671 (960)
293 smart00288 VHS Domain present 70.7 37 0.00081 27.9 8.5 71 208-278 38-111 (133)
294 PF01365 RYDR_ITPR: RIH domain 70.6 19 0.00042 32.3 7.4 126 148-278 34-169 (207)
295 cd03568 VHS_STAM VHS domain fa 70.0 33 0.00072 28.7 8.1 73 449-521 38-113 (144)
296 KOG1822 Uncharacterized conser 69.3 2.6E+02 0.0057 33.8 19.4 249 251-520 878-1129(2067)
297 PLN03076 ARF guanine nucleotid 69.1 2.3E+02 0.005 34.6 17.1 269 76-364 1150-1491(1780)
298 PF14631 FancD2: Fanconi anaem 68.2 2.7E+02 0.0058 33.4 22.7 70 332-404 430-503 (1426)
299 KOG2676 Uncharacterized conser 68.0 6.3 0.00014 37.6 3.6 65 135-205 375-440 (478)
300 PF06012 DUF908: Domain of Unk 67.9 1.1E+02 0.0025 29.7 12.6 69 131-204 237-307 (329)
301 PF14500 MMS19_N: Dos2-interac 67.7 1.1E+02 0.0024 28.7 16.5 208 131-362 14-237 (262)
302 PF06685 DUF1186: Protein of u 66.7 1.1E+02 0.0024 28.3 13.8 118 56-204 30-152 (249)
303 PF12463 DUF3689: Protein of u 66.5 1.2E+02 0.0027 28.9 12.4 126 200-325 2-178 (303)
304 PF13001 Ecm29: Proteasome sta 66.0 1.4E+02 0.003 31.2 13.5 176 131-320 252-443 (501)
305 PF14225 MOR2-PAG1_C: Cell mor 65.0 1.2E+02 0.0027 28.3 18.0 165 207-389 64-243 (262)
306 KOG2011 Sister chromatid cohes 64.9 2.5E+02 0.0054 31.9 20.2 134 259-400 297-432 (1048)
307 cd03569 VHS_Hrs_Vps27p VHS dom 64.9 38 0.00082 28.3 7.4 71 249-319 41-113 (142)
308 PF11229 DUF3028: Protein of u 64.5 1.7E+02 0.0038 29.9 14.7 244 56-320 92-353 (589)
309 PF12074 DUF3554: Domain of un 62.0 1.6E+02 0.0035 28.7 13.2 79 219-302 174-255 (339)
310 PF14225 MOR2-PAG1_C: Cell mor 60.9 1.5E+02 0.0032 27.8 18.2 174 333-519 64-255 (262)
311 PF00790 VHS: VHS domain; Int 60.9 95 0.0021 25.7 9.3 71 208-278 43-118 (140)
312 PF10274 ParcG: Parkin co-regu 60.6 1.2E+02 0.0025 26.6 10.3 82 206-287 37-118 (183)
313 PF08216 CTNNBL: Catenin-beta- 60.4 20 0.00044 28.0 4.6 39 80-118 63-101 (108)
314 cd08050 TAF6 TATA Binding Prot 59.9 1E+02 0.0022 30.3 10.6 139 252-401 181-338 (343)
315 PF01365 RYDR_ITPR: RIH domain 59.9 25 0.00054 31.6 6.0 93 222-319 76-168 (207)
316 KOG2152 Sister chromatid cohes 59.6 70 0.0015 34.1 9.5 33 140-172 358-390 (865)
317 smart00288 VHS Domain present 59.5 41 0.0009 27.6 6.7 71 106-194 39-111 (133)
318 COG5098 Chromosome condensatio 58.2 2.6E+02 0.0057 29.9 22.4 115 376-522 301-419 (1128)
319 PF04388 Hamartin: Hamartin pr 57.9 1.6E+02 0.0034 32.0 12.4 136 206-362 3-140 (668)
320 cd03567 VHS_GGA VHS domain fam 57.6 72 0.0016 26.5 7.8 72 449-520 39-118 (139)
321 KOG0301 Phospholipase A2-activ 57.3 2.6E+02 0.0057 29.7 16.3 157 180-344 559-727 (745)
322 KOG0891 DNA-dependent protein 57.1 5E+02 0.011 32.8 17.5 161 244-405 560-721 (2341)
323 PF04821 TIMELESS: Timeless pr 56.8 1.2E+02 0.0025 28.6 10.0 78 387-480 133-211 (266)
324 PF01603 B56: Protein phosphat 56.1 2.3E+02 0.005 28.6 16.6 221 174-400 99-323 (409)
325 PF04869 Uso1_p115_head: Uso1 56.1 2E+02 0.0043 27.8 14.4 143 220-362 51-231 (312)
326 KOG1848 Uncharacterized conser 53.8 2.4E+02 0.0052 32.9 12.8 97 218-319 853-957 (1610)
327 cd03572 ENTH_epsin_related ENT 53.4 1.2E+02 0.0026 24.5 8.7 40 105-156 39-80 (122)
328 KOG2152 Sister chromatid cohes 52.8 3.3E+02 0.0071 29.4 21.3 63 52-118 327-389 (865)
329 PF12463 DUF3689: Protein of u 51.7 2.3E+02 0.0049 27.2 17.2 138 97-240 2-177 (303)
330 KOG0392 SNF2 family DNA-depend 51.5 1.4E+02 0.0029 34.4 10.5 96 263-363 143-238 (1549)
331 PF04821 TIMELESS: Timeless pr 51.5 2.1E+02 0.0046 26.8 13.8 42 95-146 31-73 (266)
332 KOG0392 SNF2 family DNA-depend 51.1 3.2E+02 0.007 31.6 13.1 178 180-364 144-327 (1549)
333 KOG1525 Sister chromatid cohes 50.0 4.9E+02 0.011 30.6 17.6 73 290-363 258-330 (1266)
334 PF08389 Xpo1: Exportin 1-like 48.9 91 0.002 25.7 7.5 49 263-315 100-148 (148)
335 PF12074 DUF3554: Domain of un 47.9 2.8E+02 0.006 27.1 12.4 211 133-363 4-236 (339)
336 PF12726 SEN1_N: SEN1 N termin 47.0 2.9E+02 0.0063 30.4 12.7 108 211-320 445-553 (727)
337 cd08050 TAF6 TATA Binding Prot 45.9 48 0.001 32.5 5.9 127 56-192 209-338 (343)
338 cd03572 ENTH_epsin_related ENT 44.6 85 0.0019 25.4 6.0 70 448-517 38-118 (122)
339 KOG2149 Uncharacterized conser 43.8 2.4E+02 0.0051 28.0 9.8 113 209-322 60-172 (393)
340 PF00790 VHS: VHS domain; Int 43.5 72 0.0016 26.5 5.8 70 250-319 43-117 (140)
341 KOG2549 Transcription initiati 43.2 3.6E+02 0.0078 28.0 11.3 116 159-276 241-368 (576)
342 PF12054 DUF3535: Domain of un 41.8 2.9E+02 0.0063 28.2 10.9 109 222-334 102-211 (441)
343 PF03130 HEAT_PBS: PBS lyase H 41.7 23 0.0005 19.6 1.8 26 132-167 1-26 (27)
344 PF04064 DUF384: Domain of unk 41.4 95 0.0021 21.2 5.0 49 472-520 2-51 (58)
345 PF11791 Aconitase_B_N: Aconit 41.2 65 0.0014 27.0 4.9 43 266-319 80-122 (154)
346 PF08713 DNA_alkylation: DNA a 41.0 2.6E+02 0.0057 24.9 11.0 133 377-521 54-187 (213)
347 PF04388 Hamartin: Hamartin pr 40.6 3.1E+02 0.0067 29.8 11.3 60 220-279 81-141 (668)
348 PF14663 RasGEF_N_2: Rapamycin 40.2 77 0.0017 25.3 5.2 39 105-155 9-47 (115)
349 PF12726 SEN1_N: SEN1 N termin 40.2 3.3E+02 0.0071 30.1 11.8 88 180-277 496-584 (727)
350 smart00567 EZ_HEAT E-Z type HE 39.9 57 0.0012 18.3 3.3 28 131-168 2-29 (30)
351 PF12765 Cohesin_HEAT: HEAT re 39.6 35 0.00075 21.5 2.5 26 332-357 17-42 (42)
352 KOG1993 Nuclear transport rece 39.1 5.6E+02 0.012 28.1 22.2 135 131-278 502-644 (978)
353 COG5537 IRR1 Cohesin [Cell div 38.8 3.4E+02 0.0073 28.6 10.3 105 338-475 280-384 (740)
354 PF01603 B56: Protein phosphat 38.8 4.3E+02 0.0093 26.7 13.6 227 102-362 131-370 (409)
355 KOG1791 Uncharacterized conser 37.9 6.4E+02 0.014 30.1 13.1 193 94-304 1429-1641(1758)
356 PF08713 DNA_alkylation: DNA a 37.7 2.9E+02 0.0063 24.6 9.4 128 131-290 66-196 (213)
357 KOG4231 Intracellular membrane 37.3 34 0.00074 34.5 3.2 67 210-277 331-398 (763)
358 PF12397 U3snoRNP10: U3 small 36.9 2.2E+02 0.0047 22.8 10.6 68 208-279 7-75 (121)
359 KOG1410 Nuclear transport rece 36.5 5.7E+02 0.012 27.5 15.1 257 76-362 19-284 (1082)
360 KOG2549 Transcription initiati 34.9 3E+02 0.0066 28.5 9.3 131 55-194 237-370 (576)
361 KOG2229 Protein required for a 34.1 2.6E+02 0.0057 28.7 8.6 105 250-362 17-129 (616)
362 cd00197 VHS_ENTH_ANTH VHS, ENT 33.9 1.9E+02 0.004 22.9 6.7 74 105-192 38-113 (115)
363 PF06012 DUF908: Domain of Unk 33.7 1.8E+02 0.0038 28.4 7.6 66 79-153 238-306 (329)
364 PF09324 DUF1981: Domain of un 33.5 1.7E+02 0.0037 21.9 5.8 66 445-514 14-84 (86)
365 PF07571 DUF1546: Protein of u 33.5 70 0.0015 24.3 3.8 58 129-192 19-76 (92)
366 PF14666 RICTOR_M: Rapamycin-i 32.9 3.9E+02 0.0083 24.4 13.7 140 77-235 78-224 (226)
367 KOG2229 Protein required for a 32.6 2.6E+02 0.0057 28.7 8.4 141 106-274 18-162 (616)
368 PF03378 CAS_CSE1: CAS/CSE pro 32.5 5.6E+02 0.012 26.2 13.0 151 204-361 114-271 (435)
369 KOG4524 Uncharacterized conser 32.3 1.8E+02 0.0039 32.3 7.7 96 207-302 803-900 (1014)
370 PF12783 Sec7_N: Guanine nucle 32.3 2.4E+02 0.0052 24.1 7.5 76 444-521 69-149 (168)
371 PF04499 SAPS: SIT4 phosphatas 32.2 2.7E+02 0.0058 28.8 8.9 39 149-194 54-92 (475)
372 PF08389 Xpo1: Exportin 1-like 32.0 1.5E+02 0.0033 24.3 6.2 63 448-513 82-148 (148)
373 PF11791 Aconitase_B_N: Aconit 31.8 77 0.0017 26.5 4.0 26 376-401 96-121 (154)
374 cd03565 VHS_Tom1 VHS domain fa 30.3 3.2E+02 0.0069 22.7 10.3 95 175-278 15-115 (141)
375 PF07923 N1221: N1221-like pro 30.0 1E+02 0.0022 29.4 5.3 54 446-499 58-126 (293)
376 COG5537 IRR1 Cohesin [Cell div 30.0 6.7E+02 0.015 26.6 10.8 126 255-389 281-408 (740)
377 PF08454 RIH_assoc: RyR and IP 29.5 2.8E+02 0.0062 21.8 6.9 86 131-217 8-106 (109)
378 PF04499 SAPS: SIT4 phosphatas 29.3 3.3E+02 0.0071 28.2 8.9 80 198-277 53-147 (475)
379 KOG2199 Signal transducing ada 29.2 3.3E+02 0.0072 26.9 8.2 94 176-278 23-118 (462)
380 PF14663 RasGEF_N_2: Rapamycin 29.2 1.3E+02 0.0029 23.9 4.9 37 449-485 9-45 (115)
381 KOG4524 Uncharacterized conser 29.1 1.8E+02 0.0039 32.3 7.1 94 249-343 803-899 (1014)
382 PF12783 Sec7_N: Guanine nucle 28.8 3.7E+02 0.008 22.9 9.5 74 245-321 69-147 (168)
383 KOG2149 Uncharacterized conser 27.8 5.1E+02 0.011 25.8 9.3 112 251-363 60-171 (393)
384 KOG1410 Nuclear transport rece 27.7 8E+02 0.017 26.5 16.4 131 130-277 20-156 (1082)
385 KOG4231 Intracellular membrane 27.2 35 0.00075 34.5 1.5 70 292-361 329-398 (763)
386 KOG2038 CAATT-binding transcri 27.2 6.4E+02 0.014 27.6 10.4 75 448-527 304-379 (988)
387 PF07571 DUF1546: Protein of u 26.1 1.7E+02 0.0038 22.1 4.9 58 344-401 17-76 (92)
388 PF12054 DUF3535: Domain of un 26.1 7.2E+02 0.016 25.4 16.7 77 306-386 102-180 (441)
389 cd00197 VHS_ENTH_ANTH VHS, ENT 25.9 2.7E+02 0.0058 22.0 6.3 69 208-276 38-113 (115)
390 PF14631 FancD2: Fanconi anaem 25.8 5.7E+02 0.012 30.8 11.0 139 206-351 430-572 (1426)
391 KOG2199 Signal transducing ada 24.9 3E+02 0.0066 27.2 7.1 71 449-519 46-119 (462)
392 PF14666 RICTOR_M: Rapamycin-i 24.2 5.5E+02 0.012 23.4 13.6 129 221-362 78-225 (226)
393 KOG1087 Cytosolic sorting prot 24.1 2.9E+02 0.0063 28.4 7.3 94 174-276 14-110 (470)
394 PF12397 U3snoRNP10: U3 small 23.4 3.8E+02 0.0083 21.3 7.1 67 449-520 7-76 (121)
395 KOG2005 26S proteasome regulat 23.0 9.7E+02 0.021 25.8 14.2 78 289-367 46-130 (878)
396 KOG2038 CAATT-binding transcri 23.0 1E+03 0.022 26.1 17.6 103 207-319 304-408 (988)
397 PF07923 N1221: N1221-like pro 22.7 1.1E+02 0.0024 29.2 4.0 55 205-259 58-126 (293)
398 PF06685 DUF1186: Protein of u 21.6 6.6E+02 0.014 23.3 15.7 82 247-332 71-154 (249)
399 PF08767 CRM1_C: CRM1 C termin 21.0 7.6E+02 0.017 23.9 13.1 179 307-516 43-242 (319)
400 cd03565 VHS_Tom1 VHS domain fa 21.0 4.9E+02 0.011 21.6 7.0 59 131-194 54-115 (141)
401 PF09324 DUF1981: Domain of un 20.5 2.4E+02 0.0051 21.1 4.6 66 330-399 14-84 (86)
402 PF11894 DUF3414: Protein of u 20.2 1.7E+03 0.037 27.6 23.5 69 126-201 574-646 (1691)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=351.60 Aligned_cols=447 Identities=21% Similarity=0.217 Sum_probs=365.5
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.|+.++..|.+. ++..+..|+++|.+++. +++.+..+++.|+||.|+++|++++. +.+|+.|
T Consensus 190 aVp~LV~LLsS~------d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-----------~~VRE~A 252 (2102)
T PLN03200 190 GVDILVKLLSSG------NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-----------VSVRAEA 252 (2102)
T ss_pred CHHHHHHHHcCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-----------hHHHHHH
Confidence 567777776543 56789999999988887 58899999999999999999986543 2899999
Q ss_pred HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCc-cccchhHHHHHHHHHHHHHhhcCch----------------
Q 008781 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSN-CSRAVNSVIRRAADAITNLAHENSS---------------- 198 (554)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~-~~~~~~~~~~~a~~~L~~L~~~~~~---------------- 198 (554)
+++|++|+ +++++++.+++.|+++.|++++..+.... .......+++.|+|+|.|+|.+.+.
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPA 332 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHH
Confidence 99999999 78999999999999999999998654211 0001116788899999998873211
Q ss_pred ---------------------------------------------------------------hHHHHHhcCChHHHHHh
Q 008781 199 ---------------------------------------------------------------IKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 199 ---------------------------------------------------------------~~~~~~~~~~i~~L~~l 215 (554)
.+..+.+.++++.|+.+
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L 412 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL 412 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence 00112223445556666
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 008781 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (554)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (554)
+...+.+++..++++|++++.++.+.++.+.+.|+++.|+++|.+++..++..++++|++++.++++++..+++.|+++.
T Consensus 413 L~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 413 ITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred hccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 66667789999999999999888888999999999999999999999999999999999999988888899999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc--------
Q 008781 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-------- 367 (554)
Q Consensus 296 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~-------- 367 (554)
|+++|.+++..++++|+|+|+|++..+++.+..+.+.|+++.|+.+|+++++.+++.++++|.|++.+.++.
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L 572 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTAL 572 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999999999999999999999999765566666668899999999999999999999999999997433221
Q ss_pred ------------------------------hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC-cchhHHHhhCc
Q 008781 368 ------------------------------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGG 416 (554)
Q Consensus 368 ------------------------------~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~ 416 (554)
......|+++.|.+++.+++..+++.|+++|.+++... +....++..|+
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 00123689999999999999999999999999998754 45677889999
Q ss_pred cccccchhhhhhh-hHHHHHHHHH---------HHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 008781 417 VQKLQDGEFIVQA-TKDCVAKTLK---------RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486 (554)
Q Consensus 417 i~~L~~~~~~~~~-~~~~~~~~~~---------~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 486 (554)
+++|+.....-.. .+.-.+.++. +.......++++.|+.++++.+..++..++.+|.|++..++.+..+.
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 9998774432111 1111122221 22234678899999999999999999999999999999999998899
Q ss_pred HcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 487 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 487 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
..|+++.|+.++.+++++.|+.|+++|.+|+++.+
T Consensus 733 ~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 733 AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998765
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-39 Score=308.69 Aligned_cols=373 Identities=22% Similarity=0.316 Sum_probs=323.2
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.|+.+|+.|... .++.++.+|+|+|.|+++ +.+..+.+++.|++|.|+.++.+++. +++++|
T Consensus 110 ~v~~lV~~l~~~-----~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------------~v~eQa 172 (514)
T KOG0166|consen 110 VVPRLVEFLSRD-----DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------------DVREQA 172 (514)
T ss_pred cHHHHHHHHccC-----CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------------HHHHHH
Confidence 455566655433 356689999999999999 68999999999999999999999988 999999
Q ss_pred HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
.|+|+|++ +++.+|+.+++.|+++.|+.++...... .+.+.+.|+|.|||.+..+.-..-....++|.|..+
T Consensus 173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l 245 (514)
T KOG0166|consen 173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL 245 (514)
T ss_pred HHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999987653 789999999999998764333333446789999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 008781 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (554)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (554)
+.+.|+.+...|+|++++++.+.++..+.+++.|+++.|+.+|.+.+..++..|+++++|++.+++...+.+++.|+++.
T Consensus 246 l~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~ 325 (514)
T KOG0166|consen 246 LHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPV 325 (514)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-cCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc--hhhhh
Q 008781 296 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ--AGIAH 372 (554)
Q Consensus 296 L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~--~~l~~ 372 (554)
|..++. +....++++|+|+++|++++..+....+++.|++|.|+.+++..+.++|.+|+|+++|++.+.... ..+++
T Consensus 326 l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~ 405 (514)
T KOG0166|consen 326 LSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVE 405 (514)
T ss_pred HHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 999998 555669999999999999999999999999999999999999999999999999999998766432 45899
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHH
Q 008781 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (554)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 452 (554)
.|.|+++.++|.-.+..+...++.++.++....+..
T Consensus 406 ~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~-------------------------------------------- 441 (514)
T KOG0166|consen 406 QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE-------------------------------------------- 441 (514)
T ss_pred cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 999999999998889888888888888875332110
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 453 LLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
.+.-. +.....+.+.||+..+..+-.+.+.++...|...+..--..
T Consensus 442 --------------------~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 442 --------------------KNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred --------------------ccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 00000 23445578889999999999999999988888877765543
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=6.6e-37 Score=337.68 Aligned_cols=436 Identities=21% Similarity=0.228 Sum_probs=350.6
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChh-hHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (554)
..++.++..+... +..|..++..++.+|.+++.+.+ ....+++.|++|.|+.+|.++++ .++..
T Consensus 144 GaVp~Lv~lL~~g---sk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~------------~lQ~e 208 (2102)
T PLN03200 144 GVVPSLWDQLQPG---NKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNS------------DAQAN 208 (2102)
T ss_pred CChHHHHHHHhCC---chhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCH------------HHHHH
Confidence 4566677766654 12344467778899999999655 44677899999999999988766 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 008781 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (554)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (554)
|+++|.+++ ..++.+..+++.|++|.|+++|++..+. .+++.|+|+|.|+|.++++.+..+.+.|+++.|++
T Consensus 209 Aa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~-------~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~ 281 (2102)
T PLN03200 209 AASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV-------SVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh-------HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Confidence 999999998 7688999999999999999999864432 89999999999999999999999999999999999
Q ss_pred hhcCCC---------HHHHHHHHHHHHHhccCCcc-----------c---------------------------------
Q 008781 215 LLEFTD---------TKVQRAAAGALRTLAFKNDE-----------N--------------------------------- 241 (554)
Q Consensus 215 ll~~~~---------~~v~~~a~~~L~~l~~~~~~-----------~--------------------------------- 241 (554)
++.+++ ..+++.|.|+|.|++.+... .
T Consensus 282 lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~ 361 (2102)
T PLN03200 282 ATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPT 361 (2102)
T ss_pred HHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhcccc
Confidence 998654 34589999999998863111 0
Q ss_pred -----------------------------------hHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 242 -----------------------------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 242 -----------------------------------~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
+..+.+.++++.|+.++...+.+++..++++|++++.++.+.++.
T Consensus 362 ~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a 441 (2102)
T PLN03200 362 VIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEA 441 (2102)
T ss_pred ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 001112244455566666667889999999999999888899999
Q ss_pred HHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc
Q 008781 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
+.+.|+++.|+.+|.+++...++.++++|+|++.++++++..+.+.|++|.|+.+|.+++..+++.|+|+|+|++.+.++
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q 521 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED 521 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999987666
Q ss_pred chh-hhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHH--
Q 008781 367 QAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE-- 443 (554)
Q Consensus 367 ~~~-l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~-- 443 (554)
... +.+.|++++|+++|.++++.++..|+++|.+++.+.++... . -.+..|.... .....++.+.+.++-.
T Consensus 522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I--~-~Lv~LLlsdd---~~~~~~aL~vLgnIlsl~ 595 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI--S-QLTALLLGDL---PESKVHVLDVLGHVLSVA 595 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH--H-HHHHHhcCCC---hhHHHHHHHHHHHHHhhc
Confidence 555 44789999999999999999999999999999866443211 0 0111111111 1122222333333211
Q ss_pred ---------HHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch-hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHH
Q 008781 444 ---------KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 513 (554)
Q Consensus 444 ---------~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 513 (554)
....+.++.|+.+++++++.++..|+++|.+++.+.. .+..++..|++++|+.++.+.+.++++.|+++|
T Consensus 596 ~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL 675 (2102)
T PLN03200 596 SLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARAL 675 (2102)
T ss_pred chhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHH
Confidence 1245789999999999999999999999999987654 677899999999999999999999999999999
Q ss_pred HHHHhhc
Q 008781 514 FKLANKA 520 (554)
Q Consensus 514 ~~L~~~~ 520 (554)
.+++...
T Consensus 676 ~nL~~~~ 682 (2102)
T PLN03200 676 AALSRSI 682 (2102)
T ss_pred HHHHhCC
Confidence 9999743
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-38 Score=283.27 Aligned_cols=384 Identities=20% Similarity=0.276 Sum_probs=326.3
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (554)
..||++++++... ...-.+.+|+|+|.|+++ +....+.++++|+||.++++|.+++. +|+++
T Consensus 114 GvVpRfvefm~~~-----q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~------------~V~eQ 176 (526)
T COG5064 114 GVVPRFVEFMDEI-----QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED------------DVREQ 176 (526)
T ss_pred cccHHHHHHHHhc-----chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH------------HHHHH
Confidence 4688999988654 233488999999999999 57777888999999999999999888 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 008781 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (554)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (554)
+.|+|||++ +++.+|+.+.+.|++..++.++.+..... .+.+.+.|.|.|||.+..+.-..-.....+|.|.+
T Consensus 177 avWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i------smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K 250 (526)
T COG5064 177 AVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI------SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK 250 (526)
T ss_pred HHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH------HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH
Confidence 999999999 89999999999999999999998765433 89999999999999865444444444668999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
++.+.|+++...|+|++.+++.+..+..+.+++.|+.+.|+.+|.+++..++..+++.++|+..+++...+.++..|+++
T Consensus 251 Liys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~ 330 (526)
T COG5064 251 LIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK 330 (526)
T ss_pred HHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH
Confidence 99999999999999999999988778888899999999999999999999999999999999999999889999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc----hhh
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ----AGI 370 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~----~~l 370 (554)
.+..+|.++...+++++||+++|++.+..+....+++.+++|+|+.+|...+..++..|||++.|...+.-++ +.+
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL 410 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL 410 (526)
T ss_pred HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876555 457
Q ss_pred hhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchH
Q 008781 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (554)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 450 (554)
++.|+|.+|.++|.-.+..+.+.++.++.|+....+.-.
T Consensus 411 v~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~----------------------------------------- 449 (526)
T COG5064 411 VSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR----------------------------------------- 449 (526)
T ss_pred HHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHH-----------------------------------------
Confidence 889999999999988777777777777777654321100
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCcCcc
Q 008781 451 NHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSS 525 (554)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 525 (554)
. .+.-........+.+.||+..+..+-.+.+..+-..|...+...-........
T Consensus 450 -----~----------------~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~ 503 (526)
T COG5064 450 -----L----------------RYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDE 503 (526)
T ss_pred -----H----------------hccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhh
Confidence 0 01111122344556689999999999999999988888888777655444433
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-34 Score=277.99 Aligned_cols=363 Identities=20% Similarity=0.317 Sum_probs=308.7
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
....+..+.+. +...+..+...++.+.+. .......+..|+||.||..|...+. +.++..|
T Consensus 68 ~~~~~~~~~S~------~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~-----------~~lq~eA 130 (514)
T KOG0166|consen 68 LELMLAALYSD------DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDN-----------PTLQFEA 130 (514)
T ss_pred hHHHHHHHhCC------CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCC-----------hhHHHHH
Confidence 55555555554 555688888888887662 2344455556999999999985543 2899999
Q ss_pred HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
+|+|.|+| .+.+....+++.|++|.++.++.+++. ++++.|.|+|+|++.+.+..|..+...|.++.|+.+
T Consensus 131 AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--------~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~ 202 (514)
T KOG0166|consen 131 AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--------DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL 202 (514)
T ss_pred HHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--------HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH
Confidence 99999999 888999999999999999999999988 999999999999999999999999999999999999
Q ss_pred hcCCCH-HHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCH
Q 008781 216 LEFTDT-KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (554)
Q Consensus 216 l~~~~~-~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (554)
+..++. ...+.+.|+|.|+|.+. |...-.-+ ..++|.|..++.+.|++|...|+|+|.+|+.++.+..+.+++.|++
T Consensus 203 l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv 281 (514)
T KOG0166|consen 203 LNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVV 281 (514)
T ss_pred hccccchHHHHHHHHHHHHHHcCCCCCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccch
Confidence 988766 78889999999999875 33322222 3579999999999999999999999999998888888999999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCCcc-hhhh
Q 008781 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQ-AGIA 371 (554)
Q Consensus 294 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~~~-~~l~ 371 (554)
+.|+.+|.+++..++..|+++++|++.+++.....+++.|+++.|..++. ++...++++|+|++.|++.+...+ ..++
T Consensus 282 ~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVi 361 (514)
T KOG0166|consen 282 PRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVI 361 (514)
T ss_pred HHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 99999999999999999999999999888888888999999999999999 566679999999999999876544 5588
Q ss_pred hcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc--chhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhch
Q 008781 372 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (554)
Q Consensus 372 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 449 (554)
..|.+|.|+++++..+..++..|+|++.|++.+.. ....+++.| +
T Consensus 362 da~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g---------------------------------i 408 (514)
T KOG0166|consen 362 DANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG---------------------------------I 408 (514)
T ss_pred HcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcC---------------------------------C
Confidence 89999999999999999999999999999976533 333455555 4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 450 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
++++..+|...+..+...++-++.++....+
T Consensus 409 I~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 409 IKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred chhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888889999854433
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-35 Score=264.65 Aligned_cols=377 Identities=27% Similarity=0.357 Sum_probs=342.2
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
.......+-++++.+. .++..+..+++|++.+.+++-.++..+++..|+.-+..+.. +++
T Consensus 84 res~epvl~llqs~d~------------~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--------evq 143 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDK------------CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--------EVQ 143 (550)
T ss_pred hhhhhHHHHHHhCcch------------hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--------EEE
Confidence 3456677778888877 99999999999999888899999999999999887777766 899
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (554)
..+..+++||+. ...++..+...|++..+.++-++.+..++..+.++|.+++. ..++++.++..|++|.|+.++++.+
T Consensus 144 cnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d 221 (550)
T KOG4224|consen 144 CNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGD 221 (550)
T ss_pred eeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCC
Confidence 999999999998 47788889999999999998899999999999999999996 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcC--CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHH
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~ 340 (554)
..+++.++.+++|++.. ...++.+.+.+ +++.|++++.++++.++..|..+|+|+++ +...+..+++.|.+|.+++
T Consensus 222 ~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~ 299 (550)
T KOG4224|consen 222 LDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVE 299 (550)
T ss_pred hhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHH
Confidence 99999999999999765 66678888877 99999999999999999999999999974 5677788999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCC-hhHHHHHHHHHHHccc-CCcchhHHHhhCccc
Q 008781 341 MLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQ 418 (554)
Q Consensus 341 ~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~ 418 (554)
+++++.....-+...++.|++.++-|...+++.|++.+|+++|..++ .+++..|..+|+||+. +..++..+.+.|.+
T Consensus 300 Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi- 378 (550)
T KOG4224|consen 300 LLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAI- 378 (550)
T ss_pred HHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCch-
Confidence 99998888888899999999999999999999999999999998876 5599999999999987 67788888888765
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhh
Q 008781 419 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 498 (554)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll 498 (554)
+.+..++.+..-.+|.+...++..|+..+..+..+.+.|.++.|+.+.
T Consensus 379 --------------------------------~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t 426 (550)
T KOG4224|consen 379 --------------------------------PKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWT 426 (550)
T ss_pred --------------------------------HHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeeccc
Confidence 667789999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHhhcCcCcccccCCCCCCcc
Q 008781 499 GSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQ 536 (554)
Q Consensus 499 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~ 536 (554)
.+.+.+++..|+.+|.|++.+-+.|..+..+|..|...
T Consensus 427 ~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~g 464 (550)
T KOG4224|consen 427 GSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQG 464 (550)
T ss_pred CccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchh
Confidence 99999999999999999999999999999888777643
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-34 Score=257.13 Aligned_cols=388 Identities=22% Similarity=0.266 Sum_probs=346.1
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 155 (554)
+..++..|...+.|++-+-+++..+++.++++.|+.-+..+.. ++|..+..++.+++.-++++..+..
T Consensus 98 d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v------------evqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 98 DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV------------EVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc------------EEEeeehhhhhhhhccccchhhhhh
Confidence 7789999999999999998999999999999999888877777 8899999999999966899999999
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 235 (554)
.|++..+.++-+..+. .++.++..+|.|+.+ ..+++..++..|++|.|+.+++++|+.++.+++.++.+++
T Consensus 166 sGaL~pltrLakskdi--------rvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDI--------RVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA 236 (550)
T ss_pred ccchhhhHhhcccchh--------hHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh
Confidence 9999999997666655 899999999999998 7778999999999999999999999999999999999999
Q ss_pred cCCccchHHHHhcC--CHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHH
Q 008781 236 FKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (554)
Q Consensus 236 ~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~ 313 (554)
- +..+++.+.+.+ +++.|+.++.++++.++..|.-+|+||++. ...+..+.+.|.+|.++.+++++..+.......
T Consensus 237 V-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 237 V-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred h-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 7 677888888877 999999999999999999999999999876 455688899999999999999998888889999
Q ss_pred HHHHHhcCCcccHHHHHHcCCHHHHHHHhCCC-CHHHHHHHHHHHHHHhc-CCCcchhhhhcCCHHHHHHHhcCCChhHH
Q 008781 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (554)
Q Consensus 314 ~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~~L~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (554)
|+.|++ -.+-+...+.+.|++.+|+.+|..+ +.+++..|..+|+||+. ...++..+.+.|+++.+..++.+...++|
T Consensus 315 CIrnis-ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 315 CIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred HHhhcc-cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHH
Confidence 999996 4577777889999999999999965 45699999999999986 66788899999999999999999999999
Q ss_pred HHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHH
Q 008781 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 471 (554)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 471 (554)
.....++..|+-++..+..+.+.|.+ +.|+++..+.+.+++-+++.+
T Consensus 394 seisac~a~Lal~d~~k~~lld~gi~---------------------------------~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 394 SEISACIAQLALNDNDKEALLDSGII---------------------------------PILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred HHHHHHHHHHHhccccHHHHhhcCCc---------------------------------ceeecccCccchhhcccHHHH
Confidence 99999999999999888889888865 555667788899999999999
Q ss_pred HHhhcCCchhhHHHHHc------CcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 472 LAHLCSPDDQRTIFIDG------GGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 472 L~~l~~~~~~~~~~~~~------~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
|.||+.+.++...+++. |.-..|..++.+....++.-+.|.+.+|.++.
T Consensus 441 L~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 441 LINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999998866666654 33457888888888899999999999999863
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-33 Score=250.83 Aligned_cols=372 Identities=21% Similarity=0.290 Sum_probs=309.4
Q ss_pred hhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHH
Q 008781 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (554)
Q Consensus 54 ~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~ 131 (554)
.+....|.+...|.+. |.+.+..|..-++.+.+ +..-.+.++++|+||.++++++....+ -
T Consensus 68 q~~~elp~lt~~l~Sd------Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~-----------m 130 (526)
T COG5064 68 QFYSELPQLTQQLFSD------DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD-----------M 130 (526)
T ss_pred HhhhhhHHHHHHHhhh------HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh-----------H
Confidence 3444566666666554 77788999999988765 455566788999999999999755442 6
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 008781 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (554)
Q Consensus 132 v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (554)
++..|+|+|.|++ ........+++.|++|.++++|.+... ++++.+.|+|+|++.+++..|..+...|.+.
T Consensus 131 lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavWALGNiAGDS~~~RD~vL~~gale 202 (526)
T COG5064 131 LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVWALGNIAGDSEGCRDYVLQCGALE 202 (526)
T ss_pred HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHHHhccccCCchhHHHHHHhcCchH
Confidence 7889999999999 566666778899999999999999887 9999999999999999999999999999999
Q ss_pred HHHHhhcCCCH--HHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 211 PLVELLEFTDT--KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 211 ~L~~ll~~~~~--~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
.++.++.+.-. .+.+.+.|.|.|+|.+. |..-...+ ...+|.|.+++.+.++++...|+|++.+|+.+..+..+.+
T Consensus 203 plL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av 281 (526)
T COG5064 203 PLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV 281 (526)
T ss_pred HHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 99999987544 78899999999999863 33222222 2369999999999999999999999999999888888999
Q ss_pred HHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc
Q 008781 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (554)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~ 367 (554)
++.|..+.|+.+|.+++..++..+++.++|+..+++..-..+++.|+++.+..+|.++...+|..+||++.|++.+...+
T Consensus 282 ld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteq 361 (526)
T COG5064 282 LDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQ 361 (526)
T ss_pred HhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHH
Confidence 99999999999999999999999999999999887777778889999999999999988899999999999998876554
Q ss_pred -hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHh
Q 008781 368 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (554)
Q Consensus 368 -~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (554)
..+++.+.+|+|+++|.+.+..++..|||++.|...+.-++..+++ -+++
T Consensus 362 iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir-----------------------------yLv~ 412 (526)
T COG5064 362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR-----------------------------YLVS 412 (526)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH-----------------------------HHHH
Confidence 4578999999999999999999999999999999776544433221 1234
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
.+++..|-.+|...+-.+-.-++-++.|+....+
T Consensus 413 qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 413 QGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred ccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 4556777788887666666667888888755444
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=2.7e-24 Score=220.45 Aligned_cols=381 Identities=19% Similarity=0.222 Sum_probs=319.0
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 008781 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g 157 (554)
.....+...|.|++.++.....+.+.|+|+.|+++|++.+. ++...++.+|.+|+...+++..+.+.|
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~------------ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE------------ELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 35567788899999999999999999999999999998876 899999999999998889999999999
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (554)
+++.|.+++...+. +++..++.+|.||+. ++..+..+...|++|.|+.++.++ ..+..++.+|++++.
T Consensus 332 iV~kL~kLl~s~~~--------~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~- 399 (708)
T PF05804_consen 332 IVEKLLKLLPSENE--------DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM- 399 (708)
T ss_pred CHHHHHHHhcCCCH--------HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-
Confidence 99999999998766 899999999999999 778899999999999999999864 456678999999998
Q ss_pred CccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHH
Q 008781 238 NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 316 (554)
+++++..+...++++.+++++. .+++.+...+++.+.|++.+ +.+.+.+.+.++++.|+.........+ ...++.
T Consensus 400 dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIR 475 (708)
T PF05804_consen 400 DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIR 475 (708)
T ss_pred CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHH
Confidence 7788999998999999998665 56777888899999999876 566688888889999998765433322 346899
Q ss_pred HHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCCcchhhh-hcCCHHHHHHHhcCC--ChhHHH
Q 008781 317 QFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLKLLDSK--NGSLQH 392 (554)
Q Consensus 317 nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~~~~~l~-~~~~l~~L~~ll~~~--~~~v~~ 392 (554)
|++..++..+..+. +++..|+..+.. .+.+....++++|+||...+..-..+. +.+.++-+.++|.++ +.++..
T Consensus 476 NiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~L 553 (708)
T PF05804_consen 476 NISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLL 553 (708)
T ss_pred HHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHH
Confidence 99877656555543 467778888775 467889999999999987654444444 568899999999764 357888
Q ss_pred HHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhh--CCHHHHHHHHH
Q 008781 393 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVAL 470 (554)
Q Consensus 393 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~ 470 (554)
.++..++.++.++.....+.+.| +++.|+.+++. .|.++....++
T Consensus 554 E~Vi~~gtla~d~~~A~lL~~sg---------------------------------li~~Li~LL~~kqeDdE~VlQil~ 600 (708)
T PF05804_consen 554 EVVILLGTLASDPECAPLLAKSG---------------------------------LIPTLIELLNAKQEDDEIVLQILY 600 (708)
T ss_pred HHHHHHHHHHCCHHHHHHHHhCC---------------------------------hHHHHHHHHHhhCchHHHHHHHHH
Confidence 88999999998887777666665 46778888865 67899999999
Q ss_pred HHHhhcCCchhhHHHHH-cCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 471 ALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 471 ~L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
++..+...++.+..+++ .+++..|+.++.++|+.+|+.|-.+|--++.+++
T Consensus 601 ~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 601 VFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 99999888887776655 6778899999999999999999999999997764
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=8.1e-25 Score=224.25 Aligned_cols=356 Identities=21% Similarity=0.232 Sum_probs=297.1
Q ss_pred HHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHH
Q 008781 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (554)
Q Consensus 62 ~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (554)
++..|.+++... +.+....++..|.+++-..+++..|.+.|+++.|++++.+.+. +++..++++|.
T Consensus 291 iV~~Lv~~Ldr~--n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~------------~l~~~aLrlL~ 356 (708)
T PF05804_consen 291 IVSLLVKCLDRE--NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE------------DLVNVALRLLF 356 (708)
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH------------HHHHHHHHHHH
Confidence 444454444333 5568889999999999999999999999999999999998877 89999999999
Q ss_pred HhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CC
Q 008781 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TD 220 (554)
Q Consensus 142 ~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~ 220 (554)
||+.+++.|..++..|++|.|+.+|.++ ..+..++.+|++++. +++.+..|...+++|.+++++.. ++
T Consensus 357 NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 357 NLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 9999999999999999999999999865 566789999999999 66789999999999999997654 56
Q ss_pred HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 008781 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (554)
Q Consensus 221 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (554)
+.+...++..+.|++. ++.+.+.+.+.|+++.|++....... ...+..+.|++.+++..+..+. +.+..|+.++
T Consensus 426 ~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v 499 (708)
T PF05804_consen 426 EEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIV 499 (708)
T ss_pred ccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHh
Confidence 6777888999999997 78888889998999999976543332 2245689999988755544443 4777888887
Q ss_pred ccC-ChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCC--CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHH
Q 008781 301 SSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQAGIAHNGGLV 377 (554)
Q Consensus 301 ~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~ 377 (554)
..+ +.+...++.++|+|++..+.+....+.+.+++|.+...|..+ ..++.-.++-+++.++.++.....+.+.|.++
T Consensus 500 ~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~ 579 (708)
T PF05804_consen 500 SSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIP 579 (708)
T ss_pred hcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHH
Confidence 664 578899999999999876667767676789999999999853 45788889999999999888888899999999
Q ss_pred HHHHHhcC--CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHH
Q 008781 378 PLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 455 (554)
Q Consensus 378 ~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ 455 (554)
.|+.++.. .|.++....+++++.+..+++.+..++.... +...|+.
T Consensus 580 ~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~--------------------------------~~~ylid 627 (708)
T PF05804_consen 580 TLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETE--------------------------------IPAYLID 627 (708)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccc--------------------------------hHHHHHH
Confidence 99999965 4688999999999999999998888776432 3678999
Q ss_pred HHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 456 LMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 456 ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
++++.++.|+.-+-.+|--++..++
T Consensus 628 L~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 628 LMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 9999999999999999988876654
No 11
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.89 E-value=1.5e-21 Score=202.92 Aligned_cols=324 Identities=22% Similarity=0.268 Sum_probs=271.9
Q ss_pred HHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCcc----------------------------------------
Q 008781 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEA---------------------------------------- 121 (554)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~---------------------------------------- 121 (554)
+-.+.+..++.+++.+..++..|+++.|+++|+.++....
T Consensus 213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC 292 (2195)
T KOG2122|consen 213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYC 292 (2195)
T ss_pred HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999987765221
Q ss_pred ---c-------cC--CCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhcccc----CccccchhHHHHHH
Q 008781 122 ---D-------RN--LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD----SNCSRAVNSVIRRA 185 (554)
Q Consensus 122 ---~-------~~--~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~----~~~~~~~~~~~~~a 185 (554)
| .+ +-++.+.+ ..|+..|.++++++|+|..+.+.|++..|-+|+.-... .+.......+++++
T Consensus 293 ~~~~~~lqar~~~~apa~~~H~l-caA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa 371 (2195)
T KOG2122|consen 293 ETCWTWLQARGPAIAPASDEHQL-CAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYA 371 (2195)
T ss_pred HHHHHHHHhcCCCCCCcccchhh-HHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 0 01 23333333 27899999999999999999999999999998865422 22222334899999
Q ss_pred HHHHHHHhhcCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccc-hHHHHhcCCHHHHHH-hhcCCC
Q 008781 186 ADAITNLAHENSSIKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLIL-MLRSED 262 (554)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~-ll~~~~ 262 (554)
..+|.||.+++..++..++. .|++..+|..|.+...++....+.+|+||++..+.+ +..+.+.|-+..|.. .++...
T Consensus 372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 99999999999999888876 688999999999998899999999999999876666 445667788888886 466667
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHH-cCCHHHHHHHhccC----ChHHHHHHHHHHHHHhc---CCcccHHHHHHcCC
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSC----CSESQREAALLLGQFAA---TDSDCKVHIVQRGA 334 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~----~~~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~ 334 (554)
+......+.+||||+.+..+++..|.. .|++..|+.+|... .-.+.+.+..+|.|+++ ..++.+..+.++++
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC 531 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence 788899999999999998899888886 68999999999753 34677888889988763 46778888889999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHh-cCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc
Q 008781 335 VRPLIEMLQSPDVQLREMSAFALGRLA-QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 406 (554)
Q Consensus 335 ~~~L~~~l~~~~~~v~~~a~~~L~~L~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 406 (554)
+..|+..|++....+..++|++||||. ++++.+..+++.|+++.|.+++++++..+.+.++.+|.|+.....
T Consensus 532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 532 LQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999999999999999999999999996 567788999999999999999999999999999999999987653
No 12
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.88 E-value=4.5e-20 Score=170.76 Aligned_cols=428 Identities=17% Similarity=0.131 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhC----CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 008781 78 AAAKRATHVLAELAKNEEVVNWIVEG----GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~----g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (554)
.+...+..+++..+.++-.|..+... |.+..|.+...+++. ++-.++.++|||+| ++.|.|..
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~------------ev~~Q~~RaLgNiCydn~E~R~a 124 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT------------EVHEQCFRALGNICYDNNENRAA 124 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc------------cHHHHHHHHHhhhhccCchhHHH
Confidence 36777888888888887777766655 445555555555544 89999999999999 99999999
Q ss_pred HHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHH
Q 008781 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGA 230 (554)
Q Consensus 153 i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~ 230 (554)
+.+.|+-..++++|+....... ....+....++..|.|..-++.+.+.++.+.|+++.|...+. -.+.......+..
T Consensus 125 ~~~lgGaqivid~L~~~cs~d~-~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~ 203 (604)
T KOG4500|consen 125 FFNLGGAQIVIDVLKPYCSKDN-PANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAP 203 (604)
T ss_pred HHhcCCceehHhhhccccccCC-ccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhc
Confidence 9999998888888876433221 122378888999999999999999999999999999988774 3455555656555
Q ss_pred HHHhccCCcc-chHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc-CCh--
Q 008781 231 LRTLAFKNDE-NKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCS-- 305 (554)
Q Consensus 231 L~~l~~~~~~-~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-- 305 (554)
..|+.+-..+ ......+..+...+++++.+ -+++++..+...|...+.+ +..+-.+.+.|.+..++.+++. ...
T Consensus 204 f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~ 282 (604)
T KOG4500|consen 204 FFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTK 282 (604)
T ss_pred cccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccc
Confidence 5565542222 23445566777888888874 4677888888999888765 6667888889999999999876 221
Q ss_pred -----HHHHHHHHHHHHHhcCCcccHHHHHHcC-CHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHH
Q 008781 306 -----ESQREAALLLGQFAATDSDCKVHIVQRG-AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPL 379 (554)
Q Consensus 306 -----~~~~~a~~~L~nl~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L 379 (554)
...+.++....-+..++++- ..+...+ ++..+.+|+.+.+......+..+++|+++.+.+...+++.+++..|
T Consensus 283 k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL 361 (604)
T KOG4500|consen 283 KTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKL 361 (604)
T ss_pred hHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 12233444333344444443 3444444 8999999999999999999999999999999999999999999999
Q ss_pred HHHhcC-----CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhh--------HHHHHHHHHHHH-HH-
Q 008781 380 LKLLDS-----KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT--------KDCVAKTLKRLE-EK- 444 (554)
Q Consensus 380 ~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~--------~~~~~~~~~~l~-~~- 444 (554)
+.++.. ++.+++.+++.+|+|+.....++..+...|..+.++......++. -..+.+....+. +.
T Consensus 362 ~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~ 441 (604)
T KOG4500|consen 362 ISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELA 441 (604)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHh
Confidence 998843 567899999999999999999999999999888765543322221 111222222221 22
Q ss_pred HhhchHHHHHHHHhhCCHH-HHHHHHHHHHhhcCCch---hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 445 IHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 445 ~~~~~l~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
-+...+..|+.+.+++|.. +.-+..|.+..+..... ....+.+.||++.++.++.+.+...|.+|..+|+.++..-
T Consensus 442 kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 442 KNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred cCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 2556788999999988765 88899999999966543 4456678899999999999999999999999999887653
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=1.5e-19 Score=181.14 Aligned_cols=395 Identities=21% Similarity=0.231 Sum_probs=289.9
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (554)
...++.+.+|.+. ++.+|..|+..+..+|. +.+.+..+.+.|+|+.|+.+|.+... +|+.+
T Consensus 233 ~~lpe~i~mL~~q------~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~------------evq~~ 294 (717)
T KOG1048|consen 233 PTLPEVISMLMSQ------DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND------------EVQRQ 294 (717)
T ss_pred cccHHHHHHHhcc------ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH------------HHHHH
Confidence 3567788888765 66789999999999999 78899999999999999999999988 99999
Q ss_pred HHHHHHHhc-CCh--hhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 008781 136 SAFALGLLA-VKP--EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (554)
Q Consensus 136 a~~~L~~l~-~~~--~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (554)
++++|.||. .+. +++-.+...++++.++++|+...+. ++++.+..+|+||+. ++..+..+. ...+..|
T Consensus 295 acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-------ev~e~iTg~LWNLSS-~D~lK~~ii-~~al~tL 365 (717)
T KOG1048|consen 295 ACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-------EVRELITGILWNLSS-NDALKMLII-TSALSTL 365 (717)
T ss_pred HHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-------HHHHHHHHHHhcccc-hhHHHHHHH-HHHHHHH
Confidence 999999999 333 4889999999999999999975443 999999999999998 455555544 3445555
Q ss_pred HHhhcCC--------------CHHHHHHHHHHHHHhccCCccchHHHHh-cCCHHHHHHhhc------CCCHHHHHHHHH
Q 008781 213 VELLEFT--------------DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLR------SEDSAIHYEAVG 271 (554)
Q Consensus 213 ~~ll~~~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~------~~~~~v~~~a~~ 271 (554)
-..+-.+ +..+...+.+||+|++....+.++.+.+ .|+|+.|+..++ ..+....++++.
T Consensus 366 t~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvC 445 (717)
T KOG1048|consen 366 TDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVC 445 (717)
T ss_pred HHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 5433211 2567889999999999878888888876 589999998876 346677889999
Q ss_pred HHHHHhccChhhHHHHHHcCCHHHHHHHhccCC----hHHHHHHHHHHHHHhcC---------------CcccHHHHHHc
Q 008781 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC----SESQREAALLLGQFAAT---------------DSDCKVHIVQR 332 (554)
Q Consensus 272 ~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~---------------~~~~~~~~~~~ 332 (554)
+|.|++...+.. +.+.....+.... ..-..+...|++.-... .+.-...+...
T Consensus 446 ilRNLSYrl~~E--------vp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p 517 (717)
T KOG1048|consen 446 ILRNLSYRLEAE--------VPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHP 517 (717)
T ss_pred HHhhcCchhhhh--------cCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecH
Confidence 999996532211 1111111111000 00000222233222211 11111123344
Q ss_pred CCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCCc-----chh-hhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC
Q 008781 333 GAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHN-----QAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (554)
Q Consensus 333 ~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~~-----~~~-l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (554)
.++...+.++. +.+..+.++++++|-|++..... +.. +....++++|+++++.++..+...++.+|.||+.+.
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 55666566666 56788999999999999865421 223 367889999999999999999999999999999999
Q ss_pred cchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhC------CHHHHHHHHHHHHhhc-CC
Q 008781 406 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA------EKGVQRRVALALAHLC-SP 478 (554)
Q Consensus 406 ~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~------~~~v~~~a~~~L~~l~-~~ 478 (554)
.++..+.. .+++.|+..|... +.++...++.+|.++. ..
T Consensus 598 rnk~ligk----------------------------------~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~ 643 (717)
T KOG1048|consen 598 RNKELIGK----------------------------------YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN 643 (717)
T ss_pred hhhhhhhc----------------------------------chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh
Confidence 88766553 2367777887653 3588889999999996 55
Q ss_pred chhhHHHHHcCcHHHHHHhhCC-CChhHHHHHHHHHHHHHhhc
Q 008781 479 DDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~ 520 (554)
..+...+.+.+|++.|+.+..+ .++++-+.|...|..|=.+.
T Consensus 644 ~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 644 VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 6688889999999999999986 44577887887777776544
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.81 E-value=4.1e-18 Score=177.70 Aligned_cols=377 Identities=20% Similarity=0.209 Sum_probs=287.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH-
Q 008781 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL- 212 (554)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L- 212 (554)
+...+.|..++.+++.+..+...|.++.|+++|...+... .+.+..|-.+|.|+.+..++.+..=.+...++.|
T Consensus 212 ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~-----kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLe 286 (2195)
T KOG2122|consen 212 EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDED-----KEARKRASAALHNIVHSQPDEKRGRREKKVLHLLE 286 (2195)
T ss_pred HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhh-----HHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHH
Confidence 3456667777888888889999999999999998776532 2899999999999998776654433333333322
Q ss_pred --HHhh-------cC--------CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC------------CCH
Q 008781 213 --VELL-------EF--------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS------------EDS 263 (554)
Q Consensus 213 --~~ll-------~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~------------~~~ 263 (554)
..++ .. ++..-...|+.+|..+++ +++.+..+.+.|+++.+-.++.- ...
T Consensus 287 QIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~ 365 (2195)
T KOG2122|consen 287 QIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECN 365 (2195)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 2222 11 122334478888888888 78999999999999999887761 124
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHH-cCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCccc-HHHHHHcCCHHHHHHH
Q 008781 264 AIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEM 341 (554)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-~~~~~~~~~~~~L~~~ 341 (554)
.+|..+..+|.||+.++..++..+.. .|++..++..|.+...++..-.+.+|.||+-..+.+ +..+.+.|-+..|...
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 78999999999999998888888875 699999999999888889999999999998554444 4455567888777765
Q ss_pred -hCCCCHHHHHHHHHHHHHHhcCC-Ccchhhhh-cCCHHHHHHHhcCC----ChhHHHHHHHHHHHcccC----CcchhH
Q 008781 342 -LQSPDVQLREMSAFALGRLAQDM-HNQAGIAH-NGGLVPLLKLLDSK----NGSLQHNAAFALYGLADN----EDNVAD 410 (554)
Q Consensus 342 -l~~~~~~v~~~a~~~L~~L~~~~-~~~~~l~~-~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~~----~~~~~~ 410 (554)
+...........+.+||||+.+. +|+..|.. .|++..|+.+|... ...+.+.+-.+|.|++.. ++.++.
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 44556677789999999998765 66666654 68899999999654 356788888899887643 333333
Q ss_pred HHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhh-cCCchhhHHHHHcC
Q 008781 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL-CSPDDQRTIFIDGG 489 (554)
Q Consensus 411 ~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~~~~~~ 489 (554)
+.+ +.++..|+..|++.+-.|..++|++|+|| +.+++.++.+++.|
T Consensus 526 LR~---------------------------------~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~g 572 (2195)
T KOG2122|consen 526 LRR---------------------------------HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDG 572 (2195)
T ss_pred HHH---------------------------------hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcc
Confidence 333 33578889999999999999999999999 67788999999999
Q ss_pred cHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCc----CcccccCCCCCCcccccccccccCCCccc
Q 008781 490 GLELLLGLLGSTNPKQQLDGAVALFKLANKATT----LSSVDAAPPSPTPQVRFKNGFLHTLSYDE 551 (554)
Q Consensus 490 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 551 (554)
+++.|..++.+.+..+.+-++.+|.||..+.+. ...+.. ...-+..+.++|-..+++|+.
T Consensus 573 Av~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq~~~~~~~~--g~svgsL~vrKqkale~eL~~ 636 (2195)
T KOG2122|consen 573 AVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQASHRLMSP--GSSVGSLAVRKQKALEAELDA 636 (2195)
T ss_pred cHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhhhhhcccCc--cccccchhhhHHhhhccchhh
Confidence 999999999999999999999999999998732 222221 234446677777777777764
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.79 E-value=1.4e-15 Score=155.19 Aligned_cols=398 Identities=19% Similarity=0.207 Sum_probs=294.5
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~ 154 (554)
+++....++.+|..+......... ..+..+.|...|.++++ .||..+++.|+++. ++......+.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~------------~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP------------KVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 444556777788887764333332 45678999999999887 99999999999999 5666677788
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
+.+.++.++.++.+++. ++...|+.+|.+++...+ ....+...+.+..|..++...+..+|..++.++.++
T Consensus 117 ~~~l~~~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDL--------SVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred CccHHHHHHHHHcCCcH--------HHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 89999999999998877 999999999999998544 445577778899999999888889999999999999
Q ss_pred ccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHH-----HH
Q 008781 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-----QR 309 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-----~~ 309 (554)
+..+++....+.+.|+++.++..+.++|.-++..++.+|..|+. .+...+.+.+.|+++.|..++.+...+. ..
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence 98888999999999999999999999999999999999999998 5666799999999999999997643222 21
Q ss_pred -HHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhh-hhcC-CHHH----HHHH
Q 008781 310 -EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI-AHNG-GLVP----LLKL 382 (554)
Q Consensus 310 -~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l-~~~~-~l~~----L~~l 382 (554)
......++++..++.... -.-..++..+..++.+.|+..+..|..+++.++...+++..+ ...+ .+.. +...
T Consensus 267 ~g~~~f~g~la~~~~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred hhHHHHHHHHHhcChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 233566777754333221 112346667777788899999999999999999877777666 3332 3333 4444
Q ss_pred hcCCChhHHHHHHHHHHHcccCCcc--hhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHH-HHHHHHhh
Q 008781 383 LDSKNGSLQHNAAFALYGLADNEDN--VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN-HLLYLMRV 459 (554)
Q Consensus 383 l~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~L~~ll~~ 459 (554)
..+...+++..++.++.++...... -..+.. +. +..-....++... .++.+++.
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~------~~-----------------~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDRQDNDILS------IT-----------------ESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCCchHHHHH------HH-----------------HHHHHHhcCCchHHHHHHHhcC
Confidence 5667788999999999999544322 111110 00 0000111222233 77788888
Q ss_pred CCHHHHHHHHHHHHhhcCCchhhHHHHHc-CcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 460 AEKGVQRRVALALAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 460 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+=|++|..+.+.|..++..+.+...+... |.++-|+.--...+.+.++.-..++..|++...
T Consensus 403 PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999999977666655 444455444445666666666666666665543
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=9.4e-16 Score=138.13 Aligned_cols=342 Identities=18% Similarity=0.200 Sum_probs=262.7
Q ss_pred HHHHHHHHhcc----ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHc
Q 008781 82 RATHVLAELAK----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (554)
Q Consensus 82 ~a~~~L~~l~~----~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~ 156 (554)
+....|.+++. +-..+..-.+.|..+.++..+...+.. +..+...++.+|..+. ..|+ +.+.
T Consensus 78 E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~---------~~~~l~ksL~al~~lt~~qpd----l~da 144 (461)
T KOG4199|consen 78 ETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESP---------NESVLKKSLEAINSLTHKQPD----LFDA 144 (461)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCC---------chhHHHHHHHHHHHhhcCCcc----hhcc
Confidence 33445555543 223333445678888888777642221 1267778888888888 5554 4677
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLA 235 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 235 (554)
.++..++.+|....++. ++....+..+..-|..++.++..|.+.++++.+...+.. +...+.+.++++++.+.
T Consensus 145 ~g~~vvv~lL~~~~~~~------dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~ 218 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESE------EVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALL 218 (461)
T ss_pred ccHHHHHHHHhcccchH------HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhc
Confidence 88999999998776554 888899999999999999999999999999999977654 44468889999999998
Q ss_pred cCCc---------cchHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCCh
Q 008781 236 FKND---------ENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS 305 (554)
Q Consensus 236 ~~~~---------~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 305 (554)
.+++ ...+.+...|++..|+..+.- -++.+...++.+|..|+.. .+.++.+.+.|+++.++.++.+++.
T Consensus 219 ~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~ 297 (461)
T KOG4199|consen 219 TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNE 297 (461)
T ss_pred CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhch
Confidence 7543 224567778889999998884 3688899999999999876 5667999999999999999988543
Q ss_pred ----HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC--CCCHHHHHHHHHHHHHHhc-CCCcchhhhhcCCHHH
Q 008781 306 ----ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVP 378 (554)
Q Consensus 306 ----~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~L~~-~~~~~~~l~~~~~l~~ 378 (554)
...+.++..|..++ ++++.+..+++.|+.+.++.++. +.+|.+.+.++.+++-|+- .+++...+++.|+-..
T Consensus 298 ~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~ 376 (461)
T KOG4199|consen 298 QGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADL 376 (461)
T ss_pred hhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHH
Confidence 34567888899997 66788899999999999999876 5789999999999999984 5566677889999888
Q ss_pred HHHHhcC--CChhHHHHHHHHHHHccc-CCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHH
Q 008781 379 LLKLLDS--KNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 455 (554)
Q Consensus 379 L~~ll~~--~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ 455 (554)
.++.++. ....+|.++|++++|++. +.+++..++..| ++.|+.
T Consensus 377 avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G----------------------------------iE~Li~ 422 (461)
T KOG4199|consen 377 AVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG----------------------------------IEKLIR 422 (461)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc----------------------------------HHHHHH
Confidence 8888854 457899999999999965 455555556555 466667
Q ss_pred HHhhCCHHHHHHHHHHHHhhcCC
Q 008781 456 LMRVAEKGVQRRVALALAHLCSP 478 (554)
Q Consensus 456 ll~~~~~~v~~~a~~~L~~l~~~ 478 (554)
.-+..++.....+--+|..|--+
T Consensus 423 ~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 423 TAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHhcCccHHHHHHHHHHhcCcc
Confidence 77777777777777777777333
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.79 E-value=2.2e-17 Score=165.69 Aligned_cols=325 Identities=26% Similarity=0.307 Sum_probs=249.7
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (554)
-++..+.+|....+ .++..|..-+..+|..+...+..+...|+|+.|+.++.+.+.+++..||++|+|+.++
T Consensus 234 ~lpe~i~mL~~q~~--------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 234 TLPEVISMLMSQDP--------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred ccHHHHHHHhccCh--------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcc
Confidence 36778888887776 8999999999999999999999999999999999999999999999999999999987
Q ss_pred Ccc--chHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC-----------
Q 008781 238 NDE--NKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC----------- 303 (554)
Q Consensus 238 ~~~--~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~----------- 303 (554)
+.. ++-.+.+.++++.++++|+. .|.++++.+..+||||++. +..+..++ ...+..|..-+-.+
T Consensus 306 ~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 306 KSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred cCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCccc
Confidence 655 88889999999999999995 7999999999999999765 44444443 44566665544221
Q ss_pred ---ChHHHHHHHHHHHHHhcCCcccHHHHHH-cCCHHHHHHHhC------CCCHHHHHHHHHHHHHHhcCCC--------
Q 008781 304 ---CSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQDMH-------- 365 (554)
Q Consensus 304 ---~~~~~~~a~~~L~nl~~~~~~~~~~~~~-~~~~~~L~~~l~------~~~~~v~~~a~~~L~~L~~~~~-------- 365 (554)
..++...+..||.|+++...+.++.+.+ .|++..|+..++ ..+....+++...|.||+..-+
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 1456778999999999877787777776 688999988876 3567788999999999973211
Q ss_pred -------------------------cch---------------------hhhhcCCHHHHHHHh-cCCChhHHHHHHHHH
Q 008781 366 -------------------------NQA---------------------GIAHNGGLVPLLKLL-DSKNGSLQHNAAFAL 398 (554)
Q Consensus 366 -------------------------~~~---------------------~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L 398 (554)
.++ .++...++.+-+.++ .+.+..+.++++.+|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 000 022222333323333 345677788888888
Q ss_pred HHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC
Q 008781 399 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (554)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 478 (554)
-|++.........+...++ .+...++.|+.+++.++..+.+.++.+|.||+.+
T Consensus 544 QNltA~~~~~~~~~~~~v~---------------------------~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVF---------------------------RKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred hhhhccCCcchhHHHhhhh---------------------------hhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 8886554433332222211 2445689999999999999999999999999999
Q ss_pred chhhHHHHHcCcHHHHHHhhCCCC------hhHHHHHHHHHHHHHhhc
Q 008781 479 DDQRTIFIDGGGLELLLGLLGSTN------PKQQLDGAVALFKLANKA 520 (554)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~L~~L~~~~ 520 (554)
..++..+. .++++.|+..+-... .++...++..|.++....
T Consensus 597 ~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~ 643 (717)
T KOG1048|consen 597 IRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN 643 (717)
T ss_pred chhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh
Confidence 99888755 889999999997432 567778888899988554
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.8e-16 Score=140.59 Aligned_cols=309 Identities=18% Similarity=0.248 Sum_probs=252.8
Q ss_pred HHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHH
Q 008781 78 AAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD 155 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~ 155 (554)
.....++.+|..+.. .|+ +.+..++..++.+|..... +.++....+..+..-| .++.+|+.+++
T Consensus 122 ~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~----------~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~ 187 (461)
T KOG4199|consen 122 SVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE----------SEEVTLLTLQWLQKACIMHEVNRQLFME 187 (461)
T ss_pred hHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc----------hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555555555554 233 5667888999999876655 3388889999999999 99999999999
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc---------hhHHHHHhcCChHHHHHhhcC-CCHHHHH
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------SIKTRVRMEGGIPPLVELLEF-TDTKVQR 225 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~---------~~~~~~~~~~~i~~L~~ll~~-~~~~v~~ 225 (554)
.++++.+...|...... .+++.++|++..+..+++ .....|...|++..|++.++- -+|.+..
T Consensus 188 ~~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~ 260 (461)
T KOG4199|consen 188 LKILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLV 260 (461)
T ss_pred hhHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHH
Confidence 99999999888877663 688999999999987432 344567788899999999975 4788999
Q ss_pred HHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC-H---HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 008781 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-S---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (554)
Q Consensus 226 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~---~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (554)
.++.+|..++- +++....+.+.|+++.+++++.+.+ . ...+.++..|..|+ +++..+..+++.|+.+.++.++.
T Consensus 261 ~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~ 338 (461)
T KOG4199|consen 261 SLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLAL 338 (461)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHH
Confidence 99999999997 7888889999999999999998743 3 34567788888886 45778899999999999999875
Q ss_pred --cCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-C-CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHH
Q 008781 302 --SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLV 377 (554)
Q Consensus 302 --~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~-~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~ 377 (554)
+.++.+..+++.+++-++-..++....+++.|+-...++.++. + ...+++++|+++.|++....+...++-..+++
T Consensus 339 ~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE 418 (461)
T KOG4199|consen 339 RHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIE 418 (461)
T ss_pred HcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHH
Confidence 4568889999999999998999999999999999999999984 3 45799999999999987766656666667899
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHcccCCcchh
Q 008781 378 PLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 409 (554)
Q Consensus 378 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 409 (554)
.|++.....++.+...+..+|+.|-.+...++
T Consensus 419 ~Li~~A~~~h~tce~~akaALRDLGc~v~lre 450 (461)
T KOG4199|consen 419 KLIRTAKANHETCEAAAKAALRDLGCDVYLRE 450 (461)
T ss_pred HHHHHHHhcCccHHHHHHHHHHhcCcchhhHH
Confidence 99999999999999999999999976655443
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.78 E-value=9.7e-16 Score=142.38 Aligned_cols=428 Identities=16% Similarity=0.122 Sum_probs=308.1
Q ss_pred HHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHH
Q 008781 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (554)
Q Consensus 60 ~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (554)
..+++.|+...+++ |.++..+..+.|+|+|. +.+.|..+.+.|+-..++++|+...... .|...+...-+..
T Consensus 86 a~~le~Lrq~psS~--d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d-----~~ane~~~~v~~g 158 (604)
T KOG4500|consen 86 AEALELLRQTPSSP--DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKD-----NPANEEYSAVAFG 158 (604)
T ss_pred HHHHHHHHhCCCCC--cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccC-----CccHHHHHHHHHH
Confidence 56677777765544 56788999999999999 7999999999999888888877543311 1122356667788
Q ss_pred HHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhh
Q 008781 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL 216 (554)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll 216 (554)
.|.|-. ++.+.+..+++.|+++.|...+.-+.... +..+.++....|+..- .+.......+......+++++
T Consensus 159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNa------a~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll 232 (604)
T KOG4500|consen 159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNA------ALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLL 232 (604)
T ss_pred HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccH------HHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 888888 99999999999999999998886544322 5566666666666542 223344455566677788888
Q ss_pred cC-CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC-CC-------HHHHHHHHHHHHHHhccChhhHHHH
Q 008781 217 EF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-ED-------SAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 217 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~-------~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
.+ ..+++.......|...+. ++..+-.+.+.|.+..++.+++. .+ -..-..++....-|..+++.. +++
T Consensus 233 ~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L 310 (604)
T KOG4500|consen 233 PSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKL 310 (604)
T ss_pred HHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHH
Confidence 65 467788888899999887 77888888999999999998874 11 122334444444455565554 555
Q ss_pred HHcC-CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-----CCCHHHHHHHHHHHHHHh
Q 008781 288 LAAG-ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-----SPDVQLREMSAFALGRLA 361 (554)
Q Consensus 288 ~~~~-~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~~~v~~~a~~~L~~L~ 361 (554)
...+ +++.+.+|+.+.+......++.+++|+++.+. ...++++.+++..|++.+. +++...+++++.+|.|+.
T Consensus 311 ~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 311 HADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred hcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 5555 89999999999999999999999999997654 4566889999999999885 467889999999999999
Q ss_pred cCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc-chhHHHhh-Cccccccchhhhhhhh------HHH
Q 008781 362 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIRV-GGVQKLQDGEFIVQAT------KDC 433 (554)
Q Consensus 362 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~-~~i~~L~~~~~~~~~~------~~~ 433 (554)
....++..+...|..+.++..+....|.+...-+.+++-+....+ -..++.+. ..++.|++|....... -..
T Consensus 390 IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRl 469 (604)
T KOG4500|consen 390 IPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRL 469 (604)
T ss_pred ccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHH
Confidence 988999999999999999999999999999888888887766655 23344443 4566777655432221 111
Q ss_pred HHHHHHH--H----HHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC-----c-h-----hhHHHHHcCcHHHHHH
Q 008781 434 VAKTLKR--L----EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-----D-D-----QRTIFIDGGGLELLLG 496 (554)
Q Consensus 434 ~~~~~~~--l----~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~-~-----~~~~~~~~~~l~~L~~ 496 (554)
+...++. . -.+..++.++.++.++...+..++.+|+-+++.+..- . + ....+++.+.-...-.
T Consensus 470 l~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~ 549 (604)
T KOG4500|consen 470 LLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAAT 549 (604)
T ss_pred HHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhH
Confidence 1222211 1 2234677799999999999999999999998887322 1 1 2234455555555555
Q ss_pred hhCCCCh
Q 008781 497 LLGSTNP 503 (554)
Q Consensus 497 ll~~~~~ 503 (554)
++.++..
T Consensus 550 ~I~~~s~ 556 (604)
T KOG4500|consen 550 IIASPSY 556 (604)
T ss_pred HhcCcHH
Confidence 5554443
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.76 E-value=5.3e-15 Score=151.03 Aligned_cols=368 Identities=20% Similarity=0.179 Sum_probs=283.4
Q ss_pred HHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHH
Q 008781 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187 (554)
Q Consensus 108 ~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 187 (554)
.+...|.+.+. +....++.+|..+......... ..++.+.|...|.++++ .++..+++
T Consensus 42 ~lf~~L~~~~~------------e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l~ 99 (503)
T PF10508_consen 42 VLFDCLNTSNR------------EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP--------KVRRLALK 99 (503)
T ss_pred HHHHHHhhcCh------------HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH--------HHHHHHHH
Confidence 37777876655 5566788888888844333333 55678899999998877 99999999
Q ss_pred HHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHH
Q 008781 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (554)
Q Consensus 188 ~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 267 (554)
.|.++..++......+.+.+.++.++.++.+++..+...|+.+|.+++. .+...+.+.+.+.+..|..++..+++.+|.
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~ 178 (503)
T PF10508_consen 100 QLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRC 178 (503)
T ss_pred HHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHH
Confidence 9999998777777778889999999999999999999999999999997 556666777888899999999888899999
Q ss_pred HHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC--C
Q 008781 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--P 345 (554)
Q Consensus 268 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~--~ 345 (554)
.+..++.+++..+++....+.+.|+++.++..+.+++.-++..++.+|..++. .+.....+.+.|+++.|..++.+ .
T Consensus 179 Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 179 RVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 99999999999999998999999999999999999888899999999999986 67778889999999999999974 2
Q ss_pred CH---H-HHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHH-HhhCccccc
Q 008781 346 DV---Q-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGVQKL 420 (554)
Q Consensus 346 ~~---~-v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L 420 (554)
++ . ..-......++++...+....-.-..++..+.+++.+.++..+..|..+++.++...+.+..+ ...+.-
T Consensus 258 dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~--- 334 (503)
T PF10508_consen 258 DPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA--- 334 (503)
T ss_pred CCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH---
Confidence 33 1 222344677788775222211111234556677778899999999999999999888777666 332210
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhc--CCch--------hhHHH--HHc
Q 008781 421 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC--SPDD--------QRTIF--IDG 488 (554)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~--~~~~--------~~~~~--~~~ 488 (554)
-..++..+.........++|..++.++.++. ..+. ....+ ...
T Consensus 335 -------------------------~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~ 389 (503)
T PF10508_consen 335 -------------------------MKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSG 389 (503)
T ss_pred -------------------------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcC
Confidence 0113455555666678899999999999993 2221 11111 122
Q ss_pred CcHH-HHHHhhCCCChhHHHHHHHHHHHHHhhcCcCcccc
Q 008781 489 GGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVD 527 (554)
Q Consensus 489 ~~l~-~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 527 (554)
+-.. .+..++..+-+++|..+...|..|+.+.+....+.
T Consensus 390 ~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~ 429 (503)
T PF10508_consen 390 SPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREIC 429 (503)
T ss_pred CchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3344 77888888999999999999999999887555443
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.5e-15 Score=142.96 Aligned_cols=357 Identities=18% Similarity=0.177 Sum_probs=276.2
Q ss_pred HHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHH
Q 008781 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (554)
Q Consensus 60 ~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~ 139 (554)
..+|.+|++.+..+. .+........|..++--.++...|.+.|+|..|+++.....+ +++...++.
T Consensus 303 kniV~mLVKaLdr~n--~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~------------dL~~~tl~L 368 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSN--SSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP------------DLRKATLML 368 (791)
T ss_pred HhHHHHHHHHHcccc--hHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH------------HHHHHHHHH
Confidence 346666666654443 446666777888888878899999999999999999988877 999999999
Q ss_pred HHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-
Q 008781 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF- 218 (554)
Q Consensus 140 L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~- 218 (554)
+.|++.+...|..++..|.+|.+..++.+... ...|+..++.++. +...+..+....+++.+++.+-+
T Consensus 369 lfNlSFD~glr~KMv~~GllP~l~~ll~~d~~----------~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 369 LFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK----------HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred hhhccccccccHHHhhccchHHHHHHhCCccc----------chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988643 2467888888887 77789999999999999986644
Q ss_pred CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH
Q 008781 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (554)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 297 (554)
.+..+-...+...-|++. +..+.+.+++..++..|+.. ++..++- ....+.|++.+....+..+++ .+..|.
T Consensus 438 ~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa 510 (791)
T KOG1222|consen 438 TGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLA 510 (791)
T ss_pred CCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHH
Confidence 566666666666778886 67788888888888888864 4455542 345678888775545555543 556667
Q ss_pred HHhccCC-hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC--CCHHHHHHHHHHHHHHhcCCCcchhhhhcC
Q 008781 298 GLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNG 374 (554)
Q Consensus 298 ~lL~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~ 374 (554)
..+..++ .....++..+++|+.-.+-+....+...+++|.+-..|+. ...+++-...-+++.++.+......+...+
T Consensus 511 ~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~ 590 (791)
T KOG1222|consen 511 GIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK 590 (791)
T ss_pred HHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc
Confidence 7776554 5567788999999987777888888889999999999984 244566677778888888877777788899
Q ss_pred CHHHHHHHhcC--CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHH
Q 008781 375 GLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (554)
Q Consensus 375 ~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 452 (554)
.++.++++|+. .+.+......+.+..+..+...+..+++.... -..
T Consensus 591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~--------------------------------~Ay 638 (791)
T KOG1222|consen 591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETAL--------------------------------GAY 638 (791)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------------------------hHH
Confidence 99999999965 45667777778877777776666655554222 357
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 453 LLYLMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
|+.+|++.+.++|.-+-.+|--++..++
T Consensus 639 lIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 639 LIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 8899999999999988888888766543
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.8e-13 Score=129.13 Aligned_cols=405 Identities=15% Similarity=0.131 Sum_probs=302.1
Q ss_pred hhhhhhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcch
Q 008781 50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (554)
Q Consensus 50 ~~~~~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~ 129 (554)
.+++.+...+.++...+..+...+ ......|+..|.|++.+-..-..|+...+|..|+..|...+.
T Consensus 253 p~netLk~e~dr~~kklk~~~~KQ---eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~----------- 318 (791)
T KOG1222|consen 253 PKNETLKEEIDRLNKKLKTAIRKQ---EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNS----------- 318 (791)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccch-----------
Confidence 345556677778888877765332 246667788899999987777788999999999999999887
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
++.......|-+++--.+++..+.+.|.+..|++++...++ +++...+..+.|++. +...+......|.+
T Consensus 319 -~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~--------dL~~~tl~LlfNlSF-D~glr~KMv~~Gll 388 (791)
T KOG1222|consen 319 -SLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP--------DLRKATLMLLFNLSF-DSGLRPKMVNGGLL 388 (791)
T ss_pred -HHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH--------HHHHHHHHHhhhccc-cccccHHHhhccch
Confidence 88889999999999666889999999999999999988877 999999999999999 66678888899999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
|.+..++.++.. ..-|+..|+.++. ++..+..+.-..+++.+++.+ ...+.+|-...+....||+.. ..+.+.+.
T Consensus 389 P~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvc 464 (791)
T KOG1222|consen 389 PHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVC 464 (791)
T ss_pred HHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEe
Confidence 999999987543 2446778888886 788888888888999999754 455677777777777888765 44556677
Q ss_pred HcCCHHHHHHHh-ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCCc
Q 008781 289 AAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 289 ~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
+..++..|+..- ...++-+ ..++.|++......+..+++. +..|...++. .+......++++|+||.-.+-.
T Consensus 465 eGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 465 EGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 766788777754 3333322 457788876655566666553 5666677764 4555667888999999764433
Q ss_pred -chhhhhcCCHHHHHHHhcCC--ChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHH
Q 008781 367 -QAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (554)
Q Consensus 367 -~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~ 443 (554)
...+.+...+|-+-..|..+ ..+++....-+++.++....+...+...+
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~---------------------------- 590 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK---------------------------- 590 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc----------------------------
Confidence 34455567777777777653 34566666677777777766655555444
Q ss_pred HHhhchHHHHHHHHhh--CCHHHHHHHHHHHHhhcCCchhhHHHHHcC-cHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 444 KIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGG-GLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 444 ~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+++.++++++. .+.++....+..+..+...+..+..+++.. .-.-|+.++.+.+.++|+.+--+|--++.+.
T Consensus 591 -----~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 591 -----LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred -----cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 46778888865 556767777777777766665666555554 4457889999999999999999999888765
Q ss_pred C
Q 008781 521 T 521 (554)
Q Consensus 521 ~ 521 (554)
.
T Consensus 666 ~ 666 (791)
T KOG1222|consen 666 K 666 (791)
T ss_pred H
Confidence 4
No 23
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.60 E-value=4.8e-13 Score=131.40 Aligned_cols=395 Identities=16% Similarity=0.143 Sum_probs=267.0
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHH
Q 008781 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i 153 (554)
+++....|..-..|++- +++....+++.|.++.|+.++...+.. ++++...+.+++.+. ........+
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s----------~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGS----------TELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCc----------hhhhhhHHHHHHhHHhhccchHHHH
Confidence 55566777777888766 566677899999999999999877662 377777888888888 777788899
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc------------------------------------
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------------------------------------ 197 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~------------------------------------ 197 (554)
.+.+.++.|++++.+.+.. .++...+.++.++...++
T Consensus 92 L~~~~ll~Ll~LLs~sD~~-------~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~ 164 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSL-------NVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA 164 (678)
T ss_pred HHHhhHHHHHHHhcCcchH-------hHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999999988722 677777777777765332
Q ss_pred -------hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH---HhccCCccchHH----HHhcCCHH--HHHHhhcCC
Q 008781 198 -------SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR---TLAFKNDENKNQ----IVECNALP--TLILMLRSE 261 (554)
Q Consensus 198 -------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~~----~~~~~~~~--~L~~ll~~~ 261 (554)
..+......|+...+.-++...+..+|.+|+.+++ ++...++..... +.+.|+.+ .+.++++++
T Consensus 165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~ 244 (678)
T KOG1293|consen 165 AHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP 244 (678)
T ss_pred ccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence 12222233334444444444445678889999999 777766655443 34556666 455788888
Q ss_pred CHHHHHHHHHHHHHHhccChhhH-----HHHHHc----------------CCH---------HH----HHHHhccCC---
Q 008781 262 DSAIHYEAVGVIGNLVHSSPNIK-----KEVLAA----------------GAL---------QP----VIGLLSSCC--- 304 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~-----~~~~~~----------------~~l---------~~----L~~lL~~~~--- 304 (554)
+...+..++.++.++...+.... ..+.+. +++ .. +.+-++...
T Consensus 245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~ 324 (678)
T KOG1293|consen 245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE 324 (678)
T ss_pred CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence 88888999999988876541100 000011 100 00 111111100
Q ss_pred --hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHH----------------------HHHHHhCCCCHHHHHHHHHHHHHH
Q 008781 305 --SESQREAALLLGQFAATDSDCKVHIVQRGAVR----------------------PLIEMLQSPDVQLREMSAFALGRL 360 (554)
Q Consensus 305 --~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~----------------------~L~~~l~~~~~~v~~~a~~~L~~L 360 (554)
.+...+-..+-..+++..+..+........++ .+.......|...+.+++.++.++
T Consensus 325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 11122233334444444454444433322221 111111234677888888888888
Q ss_pred hcCCCc-chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC-CcchhHHHhhCccccccchhhhhhhhHHHHHHHH
Q 008781 361 AQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (554)
Q Consensus 361 ~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~ 438 (554)
++.-.. +..+....+..+|+++++.++..+...+++++.|+... .+.+..|++.|||
T Consensus 405 srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI--------------------- 463 (678)
T KOG1293|consen 405 SRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI--------------------- 463 (678)
T ss_pred HHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH---------------------
Confidence 865432 34466778899999999999999999999999999765 5556678888876
Q ss_pred HHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch--hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHH
Q 008781 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (554)
Q Consensus 439 ~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 516 (554)
..+.+++.+.++.++..+.|+|.++..+.+ .+..+...=+...|..+.+++++.||+.+...|.|+
T Consensus 464 ------------d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 464 ------------DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred ------------HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 566778889999999999999999977654 445555665677888999999999999999999999
Q ss_pred Hhhc
Q 008781 517 ANKA 520 (554)
Q Consensus 517 ~~~~ 520 (554)
.-..
T Consensus 532 ~c~~ 535 (678)
T KOG1293|consen 532 TCNS 535 (678)
T ss_pred hcCc
Confidence 8763
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.59 E-value=1.4e-12 Score=142.89 Aligned_cols=278 Identities=21% Similarity=0.189 Sum_probs=204.9
Q ss_pred hCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHH
Q 008781 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (554)
Q Consensus 102 ~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (554)
..+.++.|+..|+++++ .||..|+..|+.+.. .+.++.|...|++.+. .+
T Consensus 619 ~~~~~~~L~~~L~D~d~------------~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~--------~V 668 (897)
T PRK13800 619 DAPSVAELAPYLADPDP------------GVRRTAVAVLTETTP----------PGFGPALVAALGDGAA--------AV 668 (897)
T ss_pred cchhHHHHHHHhcCCCH------------HHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH--------HH
Confidence 34567788888877666 888888888887652 2347788888877665 88
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC
Q 008781 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (554)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 261 (554)
+..|+.+|..+....+ ..+.+...|.++++.++..++.+|..+... -...++..|.++
T Consensus 669 R~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~ 726 (897)
T PRK13800 669 RRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDP 726 (897)
T ss_pred HHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCC
Confidence 8888888877643111 124677778888888888888888876421 134567788888
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHH
Q 008781 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~ 341 (554)
++.+|..|+.+|..+- . .+.|..++.+.++.++..++.+|+.+.... ...++.|..+
T Consensus 727 d~~VR~~Av~aL~~~~--~------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~l 783 (897)
T PRK13800 727 DHRVRIEAVRALVSVD--D------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRAL 783 (897)
T ss_pred CHHHHHHHHHHHhccc--C------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHH
Confidence 8889988888888761 1 134567788888888888888888885321 1236778888
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCcccccc
Q 008781 342 LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ 421 (554)
Q Consensus 342 l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 421 (554)
++++++.+|..++.+|+++... ...+..+...+.++++.||..|+.+|..+....
T Consensus 784 l~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~---------------- 838 (897)
T PRK13800 784 TGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAADV---------------- 838 (897)
T ss_pred hcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccccc----------------
Confidence 8888888998888888887432 112355778888888889988888888764221
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCC
Q 008781 422 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 501 (554)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 501 (554)
.++.|+.++.++++.||..|+++|..+...+. ..+.|...+.++
T Consensus 839 ---------------------------a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~---------a~~~L~~al~D~ 882 (897)
T PRK13800 839 ---------------------------AVPALVEALTDPHLDVRKAAVLALTRWPGDPA---------ARDALTTALTDS 882 (897)
T ss_pred ---------------------------hHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH---------HHHHHHHHHhCC
Confidence 26788999999999999999999999732222 356888999999
Q ss_pred ChhHHHHHHHHHHH
Q 008781 502 NPKQQLDGAVALFK 515 (554)
Q Consensus 502 ~~~v~~~a~~~L~~ 515 (554)
++.||..|..+|..
T Consensus 883 d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 883 DADVRAYARRALAH 896 (897)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999863
No 25
>PRK09687 putative lyase; Provisional
Probab=99.57 E-value=4e-13 Score=125.94 Aligned_cols=254 Identities=18% Similarity=0.159 Sum_probs=197.7
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (554)
.++.|..+|.+.+. .++..+++.|..+-. ...++.+..+++++++.+|..++++|+.+...
T Consensus 24 ~~~~L~~~L~d~d~--------~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~ 84 (280)
T PRK09687 24 NDDELFRLLDDHNS--------LKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMA 84 (280)
T ss_pred cHHHHHHHHhCCCH--------HHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 47888999988776 899999999887642 23456788889999999999999999998742
Q ss_pred CccchHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHH
Q 008781 238 NDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 316 (554)
+.. ....++.|..+ +.++++.||..++.+|+++....... ...++..+...+.+.++.++..++++|+
T Consensus 85 -~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 85 -KRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred -ccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 111 12356777766 67889999999999999995432111 1124566777888889999999999998
Q ss_pred HHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHH
Q 008781 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 396 (554)
Q Consensus 317 nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 396 (554)
.+.. ...++.|+.++.++++.+|..|+.+|+.+..+. ...++.|+.++.+.++.|+..|++
T Consensus 154 ~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 154 VIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred ccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHH
Confidence 7631 226899999999999999999999999993211 136778999999999999999999
Q ss_pred HHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhc
Q 008781 397 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (554)
Q Consensus 397 ~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (554)
+|..+-.. .+++.|+..+.+++ ++..++.+|+.+-
T Consensus 215 aLg~~~~~-------------------------------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 215 GLALRKDK-------------------------------------------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHccCCh-------------------------------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 99986421 14788888888766 6778999999975
Q ss_pred CCchhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHHH
Q 008781 477 SPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFK 515 (554)
Q Consensus 477 ~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~ 515 (554)
.. ..++.|..++. ++++.++..|.++|..
T Consensus 250 ~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 250 DK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred CH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 42 35899999997 8899999999888754
No 26
>PRK09687 putative lyase; Provisional
Probab=99.56 E-value=1.1e-12 Score=123.09 Aligned_cols=255 Identities=16% Similarity=0.102 Sum_probs=198.3
Q ss_pred CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH
Q 008781 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (554)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (554)
-.++.|..+|.+.+. .++..++++|+.+-.. .+++.+..++.+.+. .++.
T Consensus 23 ~~~~~L~~~L~d~d~------------~vR~~A~~aL~~~~~~----------~~~~~l~~ll~~~d~--------~vR~ 72 (280)
T PRK09687 23 LNDDELFRLLDDHNS------------LKRISSIRVLQLRGGQ----------DVFRLAIELCSSKNP--------IERD 72 (280)
T ss_pred ccHHHHHHHHhCCCH------------HHHHHHHHHHHhcCcc----------hHHHHHHHHHhCCCH--------HHHH
Confidence 357889999988877 9999999999887632 236778888877766 9999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC
Q 008781 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (554)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (554)
.++++|+.+-..... ....++.|..+ ++++++.|+..++.+|+++....... ...+++.+...+.+++
T Consensus 73 ~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~ 141 (280)
T PRK09687 73 IGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKS 141 (280)
T ss_pred HHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCC
Confidence 999999998642211 12345777766 67789999999999999997532211 1224566778888999
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l 342 (554)
+.||..++++|+.+- ++ ..++.|+.++.+.++.++..|+.+|+.+...++ ..++.|+..+
T Consensus 142 ~~VR~~a~~aLg~~~--~~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L 201 (280)
T PRK09687 142 TNVRFAVAFALSVIN--DE---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAML 201 (280)
T ss_pred HHHHHHHHHHHhccC--CH---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHh
Confidence 999999999998772 22 267899999999999999999999999832222 3578899999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccc
Q 008781 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (554)
Q Consensus 343 ~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 422 (554)
.+.+..+|..|+++|+.+-. ..+++.|++.+.+++ ++..++.+|+.+...
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------------ 251 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK------------------ 251 (280)
T ss_pred cCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------------
Confidence 99999999999999998632 257999999998866 667788888887542
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHh-hCCHHHHHHHHHHHHh
Q 008781 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAH 474 (554)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~ 474 (554)
..++.|..++. .+|+.++..+.++|..
T Consensus 252 -------------------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -------------------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -------------------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 13788888886 7899999999888753
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.55 E-value=6.8e-13 Score=121.35 Aligned_cols=194 Identities=23% Similarity=0.334 Sum_probs=164.3
Q ss_pred HhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhH
Q 008781 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (554)
Q Consensus 101 ~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~ 180 (554)
.+.+-++.|+.+|+.... |.+++.++.++++.+..+.+++.+.+.|+++.+.+++.++++ .
T Consensus 9 l~~~~l~~Ll~lL~~t~d-----------p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~ 69 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-----------PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------S 69 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------H
Confidence 456678999999987543 389999999999999999999999999999999999999877 9
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (554)
++..|+++|.|++. +.+++..+. ..++.+++.+.+. +..++..++++|.+++. .++.+..+.. .++.++.+|
T Consensus 70 vr~~AL~aL~Nls~-~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL 143 (254)
T PF04826_consen 70 VREKALNALNNLSV-NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLL 143 (254)
T ss_pred HHHHHHHHHHhcCC-ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHH
Confidence 99999999999998 555666554 3577777765443 67899999999999986 4555555553 699999999
Q ss_pred cCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC-ChHHHHHHHHHHHHHhc
Q 008781 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAA 320 (554)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~nl~~ 320 (554)
.+++..++..++++|.||+.+ +.....++..+++..++.++..+ ..++...++..+.|+..
T Consensus 144 ~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 144 SSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999865 77778889899999999999876 57889999999999963
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=2.4e-12 Score=117.74 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=161.6
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (554)
...++..|... .|+.++..|+.++.+.+..+.++..+.+.|+++.+..+|..+++ .++..|++
T Consensus 14 l~~Ll~lL~~t-----~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~------------~vr~~AL~ 76 (254)
T PF04826_consen 14 LQKLLCLLEST-----EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP------------SVREKALN 76 (254)
T ss_pred HHHHHHHHhcC-----CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh------------HHHHHHHH
Confidence 45555555544 47789999999999999999999999999999999999999887 99999999
Q ss_pred HHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 008781 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (554)
Q Consensus 139 ~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (554)
+|.|++.+.+++..+-. +++.+++.......++ +++..++.+|.||+.. ...+..+. +.++.++.++.+
T Consensus 77 aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns------~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~ 145 (254)
T PF04826_consen 77 ALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNS------EVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSS 145 (254)
T ss_pred HHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCC------HHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHc
Confidence 99999988888887653 5788877665543332 8999999999999984 44455554 479999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhc
Q 008781 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~L~~ 278 (554)
++..++..++++|.|++. ++...+.++..+++..++.++..+ +.++...++..+.||..
T Consensus 146 G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 146 GSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred CChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999998 788888888889999999999865 78899999999999954
No 29
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.51 E-value=1.5e-11 Score=119.81 Aligned_cols=347 Identities=14% Similarity=0.160 Sum_probs=243.3
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc-----CChHHHHHhhcCCCHHHHHHHHHHH
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-----GGIPPLVELLEFTDTKVQRAAAGAL 231 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-----~~i~~L~~ll~~~~~~v~~~a~~~L 231 (554)
.++..++++++....+ +++.+.+..+..+...++.....|.+. .....++.+|..+|..+...++..|
T Consensus 53 ~y~~~~l~ll~~~~~~-------d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 53 QYVKTFVNLLSQIDKD-------DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 4577788888776554 899999999999998777666666653 4567788899889999999999999
Q ss_pred HHhccCCccchHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC--ChHHH
Q 008781 232 RTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQ 308 (554)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~ 308 (554)
..+....+.........-.++.+...+++. +...+..++.+|..|... +..+..+.+.++++.|+.+|+.. ....+
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 999764443322111111344555666543 467778888999999765 56678888888999999999863 35788
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCC-------cchhhhhcCCHHHHH
Q 008781 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH-------NQAGIAHNGGLVPLL 380 (554)
Q Consensus 309 ~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~-------~~~~l~~~~~l~~L~ 380 (554)
.+++.+++-++- .++........++++.++.+++. .-..+.+-++.+|.|+...+. ....++..|.++ ++
T Consensus 205 Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l 282 (429)
T cd00256 205 YQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TL 282 (429)
T ss_pred HHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HH
Confidence 899999999974 44455556678999999999995 567888999999999986432 112355555544 44
Q ss_pred HHhcC---CChhHHHHHHHHHH-------HcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchH
Q 008781 381 KLLDS---KNGSLQHNAAFALY-------GLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (554)
Q Consensus 381 ~ll~~---~~~~v~~~a~~~L~-------~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 450 (554)
+.|.. .|+++....-..-. .++..++...+ +..|.+ ++. ....+..-+.++..++++. +..++
T Consensus 283 ~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~E-l~sg~L----~WS-p~H~se~FW~EN~~kf~~~-~~~ll 355 (429)
T cd00256 283 QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSE-LRSGRL----HWS-PVHKSEKFWRENADRLNEK-NYELL 355 (429)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HhcCCc----cCC-CCCCCchHHHHHHHHHHhc-chHHH
Confidence 44433 35555443333222 22222222222 222322 111 1122344556666666543 36788
Q ss_pred HHHHHHHh-hCCHHHHHHHHHHHHhhcCC-chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 451 NHLLYLMR-VAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 451 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
..|+.++. +.++.+..-||.=++.++.. |.++..+.+.|+-..+++++.++|++||.+|..++..|.-+.
T Consensus 356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999994 56788888899999999876 558888888999999999999999999999999999987654
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.49 E-value=1.6e-11 Score=134.79 Aligned_cols=265 Identities=20% Similarity=0.160 Sum_probs=206.5
Q ss_pred HhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 008781 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (554)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i 153 (554)
+++..++..|+..|..+. ..+.++.|+..|++++. .||..|+.+|..+....
T Consensus 632 D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~------------~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAA------------AVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred CCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhcc------
Confidence 346778888888888764 24468899999987766 99999999999885211
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (554)
...+.+...|.+.+. .++..++.+|..+-.. ....++..|.++++.++..|+.+|..
T Consensus 684 ---~~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 684 ---PPAPALRDHLGSPDP--------VVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVS 740 (897)
T ss_pred ---CchHHHHHHhcCCCH--------HHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 113567777877554 8999999998886421 12357788999999999999999997
Q ss_pred hccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHH
Q 008781 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (554)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~ 313 (554)
+-. .+.|..++.++++.||..++.+|+.+..... ..++.|..++.+.++.++..|+.
T Consensus 741 ~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 741 VDD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALA 797 (897)
T ss_pred ccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHH
Confidence 521 2456788999999999999999999853321 23678889999999999999999
Q ss_pred HHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHH
Q 008781 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393 (554)
Q Consensus 314 ~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 393 (554)
+|+++.. +. ...+.+...+.++++.+|..|+.+|..+.. ...++.|+.++.++++.||..
T Consensus 798 aLg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~ 857 (897)
T PRK13800 798 ALAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKA 857 (897)
T ss_pred HHHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHH
Confidence 9999842 11 123568888999999999999999987742 235689999999999999999
Q ss_pred HHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHH
Q 008781 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 473 (554)
Q Consensus 394 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 473 (554)
|+.+|..+..++. ..+.|...++++++.||..|.++|.
T Consensus 858 A~~aL~~~~~~~~------------------------------------------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 858 AVLALTRWPGDPA------------------------------------------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHhccCCCHH------------------------------------------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999732221 2466778889999999999999986
Q ss_pred h
Q 008781 474 H 474 (554)
Q Consensus 474 ~ 474 (554)
.
T Consensus 896 ~ 896 (897)
T PRK13800 896 H 896 (897)
T ss_pred h
Confidence 4
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.1e-10 Score=119.08 Aligned_cols=384 Identities=20% Similarity=0.192 Sum_probs=252.0
Q ss_pred hHHHHHHHHHHHHHhccC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 008781 76 DRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i 153 (554)
...++..-+.+++.++++ ++.. -+.++.|.+..++.+. ..|+.|+.+|..+...-.++
T Consensus 93 ~~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~~~------------~~rE~al~il~s~~~~~~~~--- 152 (1075)
T KOG2171|consen 93 EPSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSPNP------------SLRESALLILSSLPETFGNT--- 152 (1075)
T ss_pred chHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCCCc------------chhHHHHHHHHhhhhhhccc---
Confidence 345777778888888773 3311 2346777777777777 89999999999998222111
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh-cCChHHHHHh----hcCCCHHHHHHHH
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVEL----LEFTDTKVQRAAA 228 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~~i~~L~~l----l~~~~~~v~~~a~ 228 (554)
..+.++.+..++.....+... .++..++.++..++...+..+..... ...+|.++.. +..++.+....++
T Consensus 153 -~~~~~~~l~~lf~q~~~d~s~----~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l 227 (1075)
T KOG2171|consen 153 -LQPHLDDLLRLFSQTMTDPSS----PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSAL 227 (1075)
T ss_pred -cchhHHHHHHHHHHhccCCcc----hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHH
Confidence 123455666666554433222 69999999999998765433332222 2345555544 4567777888899
Q ss_pred HHHHHhccCCccchHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhccChhhHHHHH--HcCCHHHHHHHhccCC
Q 008781 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVL--AAGALQPVIGLLSSCC 304 (554)
Q Consensus 229 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~~l~~L~~lL~~~~ 304 (554)
.+|-.++...+........ .++...+.+.++. ++.+|..|+.+|..++..-+...+..- -..+++.++.++....
T Consensus 228 ~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~ 306 (1075)
T KOG2171|consen 228 EALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEE 306 (1075)
T ss_pred HHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcc
Confidence 9999998765555444433 2566666666644 789999999999999876444333222 2335666666654311
Q ss_pred ----------------hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcch
Q 008781 305 ----------------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (554)
Q Consensus 305 ----------------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~ 368 (554)
......|..+|-.++..-+.. .+-.-+++.+-.+++++++.-|++++.+|+.++.+.....
T Consensus 307 ~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 307 DDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred cchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 113456667777776442221 1112245667777889999999999999999987654332
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhc
Q 008781 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (554)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (554)
.-.-..+++.+++.+.++++.||.+|+.+++.++.+-.. .+....+..
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p--------------------------------~iqk~~~e~ 431 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP--------------------------------EIQKKHHER 431 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH--------------------------------HHHHHHHHh
Confidence 222245677888999999999999999999999876322 011223444
Q ss_pred hHHHHHHHHhh-CCHHHHHHHHHHHHhhcCC-chhhHHHHHcCcHH-HHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 449 VLNHLLYLMRV-AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 449 ~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~-~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+.+.|+..+.+ .++.++..|+.++-|+... +...-.-.-.+.+. .|..+..++.+.+|+.+..++...+...
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 56788888866 6789999999999998433 22221112223444 5555667899999999999999998754
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.1e-11 Score=121.54 Aligned_cols=355 Identities=17% Similarity=0.123 Sum_probs=233.4
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHc----CChHHHHHHHhccccCccccchh
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVN 179 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~----g~l~~L~~lL~~~~~~~~~~~~~ 179 (554)
++|.|.++|.+++. ...+.|..+|.++| ++.+.-+.-... -.+|.++.+.+++++
T Consensus 129 lLp~L~~~L~s~d~------------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp-------- 188 (885)
T KOG2023|consen 129 LLPQLCELLDSPDY------------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP-------- 188 (885)
T ss_pred HHHHHHHHhcCCcc------------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh--------
Confidence 68899999999887 56779999999999 665543331111 358899999999877
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (554)
.++..|+.++..+...... .-.+.....+..+..+-.+.++++|+..|.++..+....++. -.-.-.++++.++...+
T Consensus 189 kiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~tq 266 (885)
T KOG2023|consen 189 KIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRTQ 266 (885)
T ss_pred hHHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHcc
Confidence 9999999999888763332 222333567788888888899999999999999999743332 11122467888888888
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHH--cCCHHHHHHHhccC----------------------------------
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSC---------------------------------- 303 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~lL~~~---------------------------------- 303 (554)
+.+.+|..+|+.....++... ..+..+.. ..++|.|++-+.-+
T Consensus 267 d~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~ 345 (885)
T KOG2023|consen 267 DVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHG 345 (885)
T ss_pred CcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhcc
Confidence 999999999999999998753 33333322 24566655433210
Q ss_pred ----------------------ChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 304 ----------------------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 304 ----------------------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
++.+|++.+.+|.-++.. .+..++. -++|.|-+.|.+.++.+|+++..+|+.++
T Consensus 346 ~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~~elL~-~l~PlLk~~L~~~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 346 NGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FGDELLP-ILLPLLKEHLSSEEWKVREAGVLALGAIA 421 (885)
T ss_pred CccccccccccccccccccccccccHhhccHHHHHHHHHh---hHHHHHH-HHHHHHHHHcCcchhhhhhhhHHHHHHHH
Confidence 033455555555555421 1111211 13455555566788999999999999999
Q ss_pred cCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC--cchhHHHhhCccccccchhhhhhhhHHHHHHHHH
Q 008781 362 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 439 (554)
Q Consensus 362 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~ 439 (554)
.+.-..-.-.-...++.++.+|.++.+-||...||+|+..+... +....+..
T Consensus 422 EGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-------------------------- 475 (885)
T KOG2023|consen 422 EGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-------------------------- 475 (885)
T ss_pred HHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--------------------------
Confidence 75422211111235788999999999999999999999987531 11111111
Q ss_pred HHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhC---CCChhHHHHHHHHHHHH
Q 008781 440 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKL 516 (554)
Q Consensus 440 ~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~L 516 (554)
.++..|+..+-+++..||++|+.+++.+-......-.-.-...+..|+..++ ..|-.+-..|...|+.=
T Consensus 476 --------pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 476 --------PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred --------HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 1355666667778999999999999988433211110011122444444443 46667777888888766
Q ss_pred Hhhc
Q 008781 517 ANKA 520 (554)
Q Consensus 517 ~~~~ 520 (554)
..+.
T Consensus 548 vg~~ 551 (885)
T KOG2023|consen 548 VGHA 551 (885)
T ss_pred HHHh
Confidence 6544
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.5e-10 Score=121.27 Aligned_cols=393 Identities=17% Similarity=0.178 Sum_probs=250.7
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (554)
..|.++++|....++. +...+.-|+.+|..+...-.+...=.-..+.+.|.+-+.+++. .||..|+
T Consensus 115 ~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~------------~vr~~a~ 180 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSS------------PVRVAAV 180 (1075)
T ss_pred chHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcc------------hHHHHHH
Confidence 6888888888776554 4458899999999987732211110001124444445555444 5999999
Q ss_pred HHHHHhc-CC---hhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 008781 138 FALGLLA-VK---PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (554)
Q Consensus 138 ~~L~~l~-~~---~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (554)
++++.++ .. ...++.+. ..+|.++..+.......+. +....++.+|..+....+..-.... ..++....
T Consensus 181 rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~----~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l 253 (1075)
T KOG2171|consen 181 RALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDD----DAAKSALEALIELLESEPKLLRPHL-SQIIQFSL 253 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccch----HHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHH
Confidence 9999998 33 23333333 3477777777664433222 5567788888888875554322211 23444445
Q ss_pred HhhcC--CCHHHHHHHHHHHHHhccCCccchHHH--HhcCCHHHHHHhhcCC--C--------------HHHHHHHHHHH
Q 008781 214 ELLEF--TDTKVQRAAAGALRTLAFKNDENKNQI--VECNALPTLILMLRSE--D--------------SAIHYEAVGVI 273 (554)
Q Consensus 214 ~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~~L~~ll~~~--~--------------~~v~~~a~~~L 273 (554)
...++ -++.+|..|+.+|..++...+...+.. .-..+++.++.++.+. | ......|.++|
T Consensus 254 ~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~l 333 (1075)
T KOG2171|consen 254 EIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQAL 333 (1075)
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHH
Confidence 55544 367899999999999987533222221 2234566666666521 1 12456777888
Q ss_pred HHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHH
Q 008781 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353 (554)
Q Consensus 274 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a 353 (554)
-.++.+-+.. .+-.-+++.+-.++++.++.-|+.++.+|+.++.+..+.....+ ..+++.++..++++++.||.+|
T Consensus 334 DrlA~~L~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA 409 (1075)
T KOG2171|consen 334 DRLALHLGGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAA 409 (1075)
T ss_pred HHHHhcCChh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHH
Confidence 8887654321 11123566777788999999999999999999866555444322 4578888899999999999999
Q ss_pred HHHHHHHhcCCCcc-hhhhhcCCHHHHHHHhcC-CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhH
Q 008781 354 AFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK 431 (554)
Q Consensus 354 ~~~L~~L~~~~~~~-~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~ 431 (554)
+.+++.++.+-... ..-...-.++.|+..+.+ .++.|+..|+.++.|++..... .++. .++
T Consensus 410 ~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~--~~l~-pYL-------------- 472 (1075)
T KOG2171|consen 410 LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK--SILE-PYL-------------- 472 (1075)
T ss_pred HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH--HHHH-HHH--------------
Confidence 99999999765332 233445566678877766 5679999999999998765322 1111 011
Q ss_pred HHHHHHHHHHHHHHhhchHH-HHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCC-hhHHH
Q 008781 432 DCVAKTLKRLEEKIHGRVLN-HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN-PKQQL 507 (554)
Q Consensus 432 ~~~~~~~~~l~~~~~~~~l~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~ 507 (554)
.+++. .+..++.++.+.+++.++-+|+..+...+....-.-.-.+|.|...+.+.+ .+.|.
T Consensus 473 ---------------d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 473 ---------------DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRE 535 (1075)
T ss_pred ---------------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHH
Confidence 11234 444455678999999999999999766543332223335788888887544 44433
No 34
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.9e-11 Score=116.15 Aligned_cols=315 Identities=19% Similarity=0.167 Sum_probs=212.9
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh----cCChHHHHHhhcCCCHHHHHHHHHHHH
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM----EGGIPPLVELLEFTDTKVQRAAAGALR 232 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (554)
..+|.|..+|..++. ...+.|..+|..+|.++...-..-.. .-.+|.++++.+++++.+|..|+.|+.
T Consensus 128 elLp~L~~~L~s~d~--------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvN 199 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDY--------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVN 199 (885)
T ss_pred hHHHHHHHHhcCCcc--------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhh
Confidence 357899999998876 67789999999999876543222110 235799999999999999999999999
Q ss_pred HhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHH
Q 008781 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (554)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~ 312 (554)
..........-.-++ .+++.+..+-.+++++||+..++++..|....++. -...-.++++.+++..++.+.++..+|+
T Consensus 200 q~i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~tqd~dE~VALEAC 277 (885)
T KOG2023|consen 200 QFIIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRTQDVDENVALEAC 277 (885)
T ss_pred heeecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHccCcchhHHHHHH
Confidence 887533322222222 36777777778999999999999999997544431 1111245777777778888899999999
Q ss_pred HHHHHHhcCCcccHHHHHH--cCCHHHHHHHhCCC---------------------------------------------
Q 008781 313 LLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSP--------------------------------------------- 345 (554)
Q Consensus 313 ~~L~nl~~~~~~~~~~~~~--~~~~~~L~~~l~~~--------------------------------------------- 345 (554)
.....++.. +.++..+.. ..++|.|++-+.-.
T Consensus 278 EFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdd 356 (885)
T KOG2023|consen 278 EFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDD 356 (885)
T ss_pred HHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccc
Confidence 999999743 455554433 35666666544200
Q ss_pred -----------CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhh
Q 008781 346 -----------DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 414 (554)
Q Consensus 346 -----------~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 414 (554)
++.+|...+.+|--|+.--. ..+. ...+|.|-..|.++++.+++++..+|+.++..-- .
T Consensus 357 dDe~DDdD~~~dWNLRkCSAAaLDVLanvf~--~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-------~ 426 (885)
T KOG2023|consen 357 DDEDDDDDAFSDWNLRKCSAAALDVLANVFG--DELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-------Q 426 (885)
T ss_pred ccccccccccccccHhhccHHHHHHHHHhhH--HHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-------h
Confidence 02355554444444432110 1111 1123334445567789999999999999876421 1
Q ss_pred CccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch--hh-HHHHHcCcH
Q 008781 415 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QR-TIFIDGGGL 491 (554)
Q Consensus 415 ~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~-~~~~~~~~l 491 (554)
|.++.| ..+++.|+.+|.+..+.||.-+||+|+..+.+-- .+ +.+. ..+
T Consensus 427 g~~p~L--------------------------peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL 478 (885)
T KOG2023|consen 427 GFVPHL--------------------------PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVL 478 (885)
T ss_pred hcccch--------------------------HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHH
Confidence 223222 1248999999999999999999999999966522 22 2221 135
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 492 ELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 492 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
..|+..+-+++.+||++|+.+.+-+-+..
T Consensus 479 ~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 479 EGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 55566666899999999999999888764
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.40 E-value=9.6e-12 Score=102.34 Aligned_cols=119 Identities=28% Similarity=0.409 Sum_probs=110.2
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCc
Q 008781 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (554)
Q Consensus 244 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 323 (554)
.+++.|+++.++.++.+++..++..++++|++++..++.....+.+.|+++.++.++.++++.++..++++|+|++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999999888888899999999999999999999999999999999998776
Q ss_pred ccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 324 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
.....+.+.|+++.++..+.+.+..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777778889999999999999999999999999999873
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.39 E-value=1.1e-11 Score=101.89 Aligned_cols=118 Identities=36% Similarity=0.499 Sum_probs=110.2
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh
Q 008781 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (554)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 281 (554)
.+...|+++.+++++.++++.++..++++|.+++...++....+.+.|+++.++.++.++++.++..++++|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999998778888899999999999999999999999999999999998877
Q ss_pred hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHh
Q 008781 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (554)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 319 (554)
.....+...|+++.+++++.+.+..+++.++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77788888999999999999999999999999999986
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.36 E-value=2e-10 Score=120.60 Aligned_cols=385 Identities=21% Similarity=0.259 Sum_probs=266.8
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (554)
+...+.-+--.+..+.. +++... + ++..+.+=|.++++ .++..|++++++++ +++..+.
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~-l----~~n~l~kdl~~~n~------------~~~~lAL~~l~~i~-~~~~~~~-- 114 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLI-L----IINSLQKDLNSPNP------------YIRGLALRTLSNIR-TPEMAEP-- 114 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHH-H----HHHHHHHHHCSSSH------------HHHHHHHHHHHHH--SHHHHHH--
T ss_pred CHHHHHHHHHHHHHHhhcchhHHH-H----HHHHHHHhhcCCCH------------HHHHHHHhhhhhhc-ccchhhH--
Confidence 44444444445556665 455222 2 36777777877766 89999999999988 4444333
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
.++.+.+++.++++ .+++.|+.++..+...+++. +... .++.+..++.++++.++..|+.++..+
T Consensus 115 ---l~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 115 ---LIPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---HHHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 36788899988776 99999999999999876664 2223 588999999999999999999999999
Q ss_pred ccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHH
Q 008781 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~ 314 (554)
..++.....+. ...++.|.+++...++-.+..++++|..++...+..... ...++.+..++++.++.+..+++.+
T Consensus 180 -~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 180 -KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRL 254 (526)
T ss_dssp -HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHH
Confidence 21222211111 234566666778899999999999999997765554311 4477888888988889999999999
Q ss_pred HHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh-cCCChhHHHH
Q 008781 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHN 393 (554)
Q Consensus 315 L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~ 393 (554)
+..+.... . .-..+++.|..++.++++.++..++..|..++... ...+. .....+..+ .+++..++..
T Consensus 255 i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~ 323 (526)
T PF01602_consen 255 IIKLSPSP-E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKK 323 (526)
T ss_dssp HHHHSSSH-H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHH
T ss_pred HHHhhcch-H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhh--hhhhhhheecCCCChhHHHH
Confidence 99886322 2 33457899999999999999999999999998754 22222 333334444 4888999999
Q ss_pred HHHHHHHcccCCcchhHHHhhCccccccchhhh--hhhhHHHHHHHHHHHHHHHh---hchHHHHHHHHhhCCHHHHHHH
Q 008781 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFI--VQATKDCVAKTLKRLEEKIH---GRVLNHLLYLMRVAEKGVQRRV 468 (554)
Q Consensus 394 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~--~~~~~~~~~~~~~~l~~~~~---~~~l~~L~~ll~~~~~~v~~~a 468 (554)
++.+|..++.. .+...++.. |..-... ....+..+...+..+..... ...+..++.++...+..+...+
T Consensus 324 ~l~lL~~l~~~-~n~~~Il~e-----L~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~ 397 (526)
T PF01602_consen 324 ALDLLYKLANE-SNVKEILDE-----LLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEI 397 (526)
T ss_dssp HHHHHHHH--H-HHHHHHHHH-----HHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHH
T ss_pred HHHHHhhcccc-cchhhHHHH-----HHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchH
Confidence 99999999853 444443332 2111100 11133334444444444442 3477888999998888888899
Q ss_pred HHHHHhhcCCch-hhHHHHHcCcHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcCc
Q 008781 469 ALALAHLCSPDD-QRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 469 ~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
...+.++....+ .+.. .+..|..++.+ .+++++..++|.+...+.....
T Consensus 398 ~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 398 INVIRDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 999999864433 3332 37888888885 7778889999999888776544
No 38
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.6e-10 Score=111.11 Aligned_cols=245 Identities=18% Similarity=0.222 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 008781 76 DRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (554)
|+..|.+|+.-|+.+.. +++....+--..++|.|+.+|+.... +++...|+++|.+|| .-|.....
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-----------~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-----------FDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHHhhccchhhe
Confidence 66688888888888765 67777766667789999999987654 399999999999999 88898999
Q ss_pred HHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 008781 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (554)
Q Consensus 153 i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (554)
++++++||.|+.-|..-.-. ++.+.++.+|-.++..++. .+...|++...+.++..-+..+|+.|+.+..
T Consensus 250 vV~~~aIPvl~~kL~~Ieyi-------DvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYI-------DVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred eecccchHHHHHhhhhhhhh-------HHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999776654332 8999999999999987764 4678999999999999888999999999999
Q ss_pred HhccC-CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc---cChhhHHHHHHcCCHHHHHHHhccCC----
Q 008781 233 TLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCC---- 304 (554)
Q Consensus 233 ~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~~lL~~~~---- 304 (554)
|+|.. .++.-..+++ .+|.|..+|...+....+.++-|+..++. +.++.-+.+...|++....+++.-..
T Consensus 320 N~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILS 397 (1051)
T ss_pred HHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccc
Confidence 99974 2333444554 59999999999999888989888888865 45666688888999999999986432
Q ss_pred hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC
Q 008781 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (554)
Q Consensus 305 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~ 343 (554)
..+....+++|..++++++...+.+...++...|..+|.
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 344556778889998888888888889999998888886
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.35 E-value=3.1e-10 Score=119.11 Aligned_cols=402 Identities=21% Similarity=0.232 Sum_probs=264.5
Q ss_pred HHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHH
Q 008781 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (554)
Q Consensus 62 ~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (554)
.+..+.+.+. ++++.++..|+++|++++ +++....+ ++.+.+++.++++ .||..|+.++.
T Consensus 80 ~~n~l~kdl~--~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~------------~VRk~A~~~l~ 139 (526)
T PF01602_consen 80 IINSLQKDLN--SPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSP------------YVRKKAALALL 139 (526)
T ss_dssp HHHHHHHHHC--SSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSH------------HHHHHHHHHHH
T ss_pred HHHHHHHhhc--CCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCch------------HHHHHHHHHHH
Confidence 3444444433 335678899999999987 55555554 7888999998877 99999999999
Q ss_pred Hhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 008781 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (554)
Q Consensus 142 ~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (554)
++. .+|+.- ... .++.+.+++.+.+. .++..|+.++..+ ..++.... -.....+..|..++...+
T Consensus 140 ~i~~~~p~~~---~~~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~ 205 (526)
T PF01602_consen 140 KIYRKDPDLV---EDE-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPD 205 (526)
T ss_dssp HHHHHCHCCH---HGG-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCS
T ss_pred HHhccCHHHH---HHH-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccc
Confidence 999 666642 222 58889999977765 8999999999998 32332211 112234556666667889
Q ss_pred HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 008781 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (554)
Q Consensus 221 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (554)
+-.+...++.|..++...+..... ..+++.+..++.+.++.|...++.++..+....+ .-..+++.+..++
T Consensus 206 ~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL 276 (526)
T PF01602_consen 206 PWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLL 276 (526)
T ss_dssp HHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHh
Confidence 999999999999888644433311 3467888888888899999999999999854322 3345788999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHH
Q 008781 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 380 (554)
Q Consensus 301 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~ 380 (554)
.+.++.++..++..|..++... .. .+. .....+..+..+++..++..++..|.+++... +... +++.|.
T Consensus 277 ~s~~~nvr~~~L~~L~~l~~~~---~~-~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~-n~~~-----Il~eL~ 345 (526)
T PF01602_consen 277 SSSDPNVRYIALDSLSQLAQSN---PP-AVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES-NVKE-----ILDELL 345 (526)
T ss_dssp TSSSHHHHHHHHHHHHHHCCHC---HH-HHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH-HHHH-----HHHHHH
T ss_pred hcccchhehhHHHHHHHhhccc---ch-hhh-hhhhhhheecCCCChhHHHHHHHHHhhccccc-chhh-----HHHHHH
Confidence 9989999999999999998554 12 222 22223333344889999999999999998532 2221 567788
Q ss_pred HHh-cCCChhHHHHHHHHHHHcccCC-cchhHHHhhCccccccc-hhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008781 381 KLL-DSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM 457 (554)
Q Consensus 381 ~ll-~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll 457 (554)
..+ ...+.+++..++..+..++... ......++. .++.+.. +.........++...+.+- ......++..|...+
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~-l~~ll~~~~~~~~~~~~~~i~~ll~~~-~~~~~~~l~~L~~~l 423 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT-LLKLLEISGDYVSNEIINVIRDLLSNN-PELREKILKKLIELL 423 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH-HHHHHHCTGGGCHCHHHHHHHHHHHHS-TTTHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHH-HHHhhhhccccccchHHHHHHHHhhcC-hhhhHHHHHHHHHHH
Confidence 888 4458889999999999987542 222222221 1111110 0111111111111111110 112344688888888
Q ss_pred hh-CCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 458 RV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 458 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
.. .++.++..++|+++..+...+... .-...+..+.......++.+|.....++..+....+
T Consensus 424 ~~~~~~~~~~~~~wilGEy~~~~~~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 424 EDISSPEALAAAIWILGEYGELIENTE--SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp TSSSSHHHHHHHHHHHHHHCHHHTTTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhHHHHHHHHHhhhcccCCcccccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 76 788999999999999865533300 111234566666667778899999999999987755
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.35 E-value=1.1e-09 Score=106.99 Aligned_cols=320 Identities=14% Similarity=0.190 Sum_probs=220.7
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhC-----CChHHHHHhhcCCCCCccccCCCcchH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEG-----GAVPALVKHLQAPPTSEADRNLKPFEH 130 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~-----g~v~~Lv~lL~~~~~~~~~~~~~~~~~ 130 (554)
..+..++..|... .........+..+..+.. ++.....+.+. .....++.+|+.++.
T Consensus 53 ~y~~~~l~ll~~~-----~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~------------ 115 (429)
T cd00256 53 QYVKTFVNLLSQI-----DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ------------ 115 (429)
T ss_pred HHHHHHHHHHhcc-----CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch------------
Confidence 3344455544443 234577778888888887 56666666654 567788888886655
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
-+...++.+|..+. .++.........-..+.+...++...+. ..+..++.+|..+.. .++.|..+...+++
T Consensus 116 ~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-------~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v 187 (429)
T cd00256 116 FIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNN-------DYVQTAARCLQMLLR-VDEYRFAFVLADGV 187 (429)
T ss_pred hHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCc-------chHHHHHHHHHHHhC-CchHHHHHHHccCH
Confidence 78899999999987 4443211111111234455555544322 778889999999998 77789889999999
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccC------
Q 008781 210 PPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSS------ 280 (554)
Q Consensus 210 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~------ 280 (554)
+.|+.+|+.. +..++..++-|++-+++ +++....+...++++.++.+++ +..+.+.+-++.+|.|+...+
T Consensus 188 ~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~ 266 (429)
T cd00256 188 PTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVK 266 (429)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchh
Confidence 9999999763 56889999999999998 5556666677899999999998 457789999999999998643
Q ss_pred hhhHHHHHHcCCHHHHHHHhcc--CChHHHHHHHH-------HHHHHhcC--------------Cc---------ccHHH
Q 008781 281 PNIKKEVLAAGALQPVIGLLSS--CCSESQREAAL-------LLGQFAAT--------------DS---------DCKVH 328 (554)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~a~~-------~L~nl~~~--------------~~---------~~~~~ 328 (554)
......++..|+++.+-.+... .++++....-. .+..+++. +| ++...
T Consensus 267 ~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~k 346 (429)
T cd00256 267 KTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADR 346 (429)
T ss_pred hhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHH
Confidence 1233555666766655555432 24444332111 11122211 11 12223
Q ss_pred HHHc--CCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCCc-chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcc
Q 008781 329 IVQR--GAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (554)
Q Consensus 329 ~~~~--~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (554)
+-+. .++..|+.+|. +.|+.+..-||.=++.++++.+. +..+-..|+=..+++++.+++++|+..|+.++..|.
T Consensus 347 f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 347 LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3333 35678888885 56888888999999999987654 555566788888999999999999999999988774
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.31 E-value=4.4e-10 Score=110.97 Aligned_cols=385 Identities=14% Similarity=0.096 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
+....+..-..|+. ..+..+..+++.|+++.++.++...+..+ +.......++..+..........+.+.+.+
T Consensus 24 e~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~------~~k~~~~~llns~f~~eqd~v~svL~~~~l 97 (678)
T KOG1293|consen 24 EQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGST------ELKNGFAVLLNSLFLGEQDKVDSVLRIIEL 97 (678)
T ss_pred HHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCch------hhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence 55556777777777 77777778999999999999998877654 666677778888887777778888889999
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHhccCCccc-------------------------------------------hHHH
Q 008781 210 PPLVELLEFTD-TKVQRAAAGALRTLAFKNDEN-------------------------------------------KNQI 245 (554)
Q Consensus 210 ~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~-------------------------------------------~~~~ 245 (554)
+.+++++.++| ..++...+++++++.+.++.. +..+
T Consensus 98 l~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il 177 (678)
T KOG1293|consen 98 LKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLIL 177 (678)
T ss_pred HHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhhee
Confidence 99999999888 788999999999987654311 1111
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHH---HHhccChhhHHHHH----HcCCHH--HHHHHhccCChHHHHHHHHHHH
Q 008781 246 VECNALPTLILMLRSEDSAIHYEAVGVIG---NLVHSSPNIKKEVL----AAGALQ--PVIGLLSSCCSESQREAALLLG 316 (554)
Q Consensus 246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~---~L~~~~~~~~~~~~----~~~~l~--~L~~lL~~~~~~~~~~a~~~L~ 316 (554)
.+.|+.+.+.-++...+..+|..|+.++. ++..+++.....+. +.|+.+ .+..++++++...+-.++.++.
T Consensus 178 ~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~ 257 (678)
T KOG1293|consen 178 CNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLV 257 (678)
T ss_pred ccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHH
Confidence 22223333333333334567888888888 77666665543333 345555 5667778888888888888888
Q ss_pred HHhcCCcccH-----HHHHHcC--CHH--HHHHHhCCCCHHHHHHHHHHHHHHhc-CCCcchhhhhcCCHHHHHHHh---
Q 008781 317 QFAATDSDCK-----VHIVQRG--AVR--PLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLL--- 383 (554)
Q Consensus 317 nl~~~~~~~~-----~~~~~~~--~~~--~L~~~l~~~~~~v~~~a~~~L~~L~~-~~~~~~~l~~~~~l~~L~~ll--- 383 (554)
++...+-+.- ..+.+.| .+- ..+.++.++-......++...+-++. ....+....+...++...+++
T Consensus 258 ~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~ 337 (678)
T KOG1293|consen 258 PYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFIC 337 (678)
T ss_pred HHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHH
Confidence 8875541111 1122222 111 11222223322222233333333331 122333334444444444444
Q ss_pred ---cCCChhHHHHHHH---HHHHcccC--CcchhHHHhhCccccccchh--hhh-hhhHHHHH-----HHHHHHHH-HHh
Q 008781 384 ---DSKNGSLQHNAAF---ALYGLADN--EDNVADFIRVGGVQKLQDGE--FIV-QATKDCVA-----KTLKRLEE-KIH 446 (554)
Q Consensus 384 ---~~~~~~v~~~a~~---~L~~l~~~--~~~~~~~~~~~~i~~L~~~~--~~~-~~~~~~~~-----~~~~~l~~-~~~ 446 (554)
....++.+.-++. .+..++.. -.+++++.+.-....+.... .++ .....|+. +....+.. .-.
T Consensus 338 ~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~ 417 (678)
T KOG1293|consen 338 ASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKR 417 (678)
T ss_pred HHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 2233333332222 11112211 12333333322222221111 111 12223321 22222221 236
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhc-CCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLC-SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
.++...|++++..++..|+..++++|+|+. ...+.+..|+..||++.+.+++.+.++.++..+.|+|+++.....
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence 678999999999999999999999999994 557788889999999999999999999999999999999998654
No 42
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=4.1e-09 Score=105.64 Aligned_cols=466 Identities=18% Similarity=0.155 Sum_probs=279.7
Q ss_pred hhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHH
Q 008781 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (554)
Q Consensus 54 ~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~ 131 (554)
.+......++..........+.+..++..|+.+|.+-.. .....+.+-..=++...++.-++++. +
T Consensus 165 vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~------------~ 232 (859)
T KOG1241|consen 165 VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE------------E 232 (859)
T ss_pred HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH------------H
Confidence 344444555555555545555566789999999888543 12222233333345555566666655 9
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchh-----------
Q 008781 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI----------- 199 (554)
Q Consensus 132 v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~----------- 199 (554)
++..|..+|.++. -..++-..-........-+.-++++++ ++.-.++....++|.+.-+.
T Consensus 233 i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d--------eValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND--------EVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999998 555554444444445555566666555 89999999999999632210
Q ss_pred ----HHHH---HhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHH----HhhcCC
Q 008781 200 ----KTRV---RMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI----LMLRSE 261 (554)
Q Consensus 200 ----~~~~---~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~----~ll~~~ 261 (554)
...+ ...+.+|.|+++|.. ++.....+|..||.-++.. ....++++++ .-++++
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--------~~D~Iv~~Vl~Fiee~i~~p 376 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--------VGDDIVPHVLPFIEENIQNP 376 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--------hcccchhhhHHHHHHhcCCc
Confidence 0111 113567888888854 2345777777777776642 2223444444 455678
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHH-HHHHcCCHHHHHH
Q 008781 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIE 340 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~~~~L~~ 340 (554)
+-.-|..++.+++.+-.+.+..+..-+..++++.++.++.+++--++..++|+|+.++..-++.+. ...-...++.++.
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 889999999999999888776666667788999999999988888899999999999876554332 2333456666766
Q ss_pred HhCCCCHHHHHHHHHHHHHHhcCC-----Cc-chhhhhcCCHHHHHH-Hh---cC---CChhHHHHHHHHHHHcccCCcc
Q 008781 341 MLQSPDVQLREMSAFALGRLAQDM-----HN-QAGIAHNGGLVPLLK-LL---DS---KNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 341 ~l~~~~~~v~~~a~~~L~~L~~~~-----~~-~~~l~~~~~l~~L~~-ll---~~---~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
.|.+ .|.+..++||++.+|+... .+ +..... ...+.+++ ++ +. ....+|..|-.+|..+..+...
T Consensus 457 gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 457 GLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred Hhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 6665 6789999999999999421 11 111222 23333333 32 22 2356888888899988765332
Q ss_pred -hhHHHhhC---ccccc---cc-------hhhhhhhhHHHHHHHHHHHHHH-------HhhchHHHHHHHHhh-CCHHHH
Q 008781 408 -VADFIRVG---GVQKL---QD-------GEFIVQATKDCVAKTLKRLEEK-------IHGRVLNHLLYLMRV-AEKGVQ 465 (554)
Q Consensus 408 -~~~~~~~~---~i~~L---~~-------~~~~~~~~~~~~~~~~~~l~~~-------~~~~~l~~L~~ll~~-~~~~v~ 465 (554)
...++..- ....| ++ +-.+.+.+...+...+..+..+ ....++..++.++.+ .+..++
T Consensus 535 ~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~ 614 (859)
T KOG1241|consen 535 DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVH 614 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccch
Confidence 21111110 00000 00 0111222333344444444333 244577788888877 566788
Q ss_pred HHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcCcCcccccCCCCCCcccccccccc
Q 008781 466 RRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVRFKNGFL 544 (554)
Q Consensus 466 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (554)
+.|..+++.++..-..+..-.-....|-|..-+. ..+..|...|......|++.-.+ .+ .+=.+.-...=-+-+
T Consensus 615 e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~--~i---~py~d~~mt~Lvq~L 689 (859)
T KOG1241|consen 615 EEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED--DI---LPYCDELMTVLVQCL 689 (859)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--hh---hhHHHHHHHHHHHHc
Confidence 8898888888654332222122233455555553 34556777777777777764321 01 111122222223467
Q ss_pred cCCCcccCCC
Q 008781 545 HTLSYDENVK 554 (554)
Q Consensus 545 ~~~~~~~~~~ 554 (554)
++|.+|++||
T Consensus 690 ss~~~hR~vK 699 (859)
T KOG1241|consen 690 SSPNLHRNVK 699 (859)
T ss_pred cCcccccccc
Confidence 8888998887
No 43
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.2e-09 Score=101.42 Aligned_cols=192 Identities=21% Similarity=0.230 Sum_probs=166.7
Q ss_pred hhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CC
Q 008781 68 TTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK 146 (554)
Q Consensus 68 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~ 146 (554)
..+..++.+.+-+..|+.-|..++.+-++...+++.|+...++.++++++. .+|..|+++|+..+ ++
T Consensus 88 ~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~------------~lR~~Aa~Vigt~~qNN 155 (342)
T KOG2160|consen 88 VILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA------------ELRELAARVIGTAVQNN 155 (342)
T ss_pred hccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH------------HHHHHHHHHHHHHHhcC
Confidence 334445557777889999999999999999999999999999999999988 99999999999999 99
Q ss_pred hhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--CCHHHH
Q 008781 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQ 224 (554)
Q Consensus 147 ~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~ 224 (554)
|..+..+++.|+++.|+..+....+. .++..|+.+++.+...+++....|...++...|...+.+ .+...+
T Consensus 156 P~~Qe~v~E~~~L~~Ll~~ls~~~~~-------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lk 228 (342)
T KOG2160|consen 156 PKSQEQVIELGALSKLLKILSSDDPN-------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLK 228 (342)
T ss_pred HHHHHHHHHcccHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHH
Confidence 99999999999999999999966554 888999999999999999999999999999999999998 567888
Q ss_pred HHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 225 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
..++..+..+..........+...++...+..+....+.+++..++.++..+..
T Consensus 229 rK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 229 RKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 999999999998666666666666777777777778888888888888777654
No 44
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=7.3e-09 Score=103.90 Aligned_cols=404 Identities=15% Similarity=0.099 Sum_probs=249.7
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc--ChhhHHHHHh----------CCChHHHHHhhcCCCCCccccCCC
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVE----------GGAVPALVKHLQAPPTSEADRNLK 126 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~----------~g~v~~Lv~lL~~~~~~~~~~~~~ 126 (554)
.+.++..|...+.........+..|--.|.|-.. +++....+.+ ..+=..+++-|.++.+
T Consensus 33 f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep-------- 104 (859)
T KOG1241|consen 33 FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEP-------- 104 (859)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCC--------
Confidence 3444444444443333444566666666777433 4544433332 1122234445555544
Q ss_pred cchHHHHHHHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH
Q 008781 127 PFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (554)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (554)
.....|+.+++.++ .-|. +.-|.|+..|.+....... ..+++.++.+|+.+|.+-.+-...-.
T Consensus 105 ----~~~s~Aaq~va~IA~~ElP~--------n~wp~li~~lv~nv~~~~~---~~~k~~slealGyice~i~pevl~~~ 169 (859)
T KOG1241|consen 105 ----RRPSSAAQCVAAIACIELPQ--------NQWPELIVTLVSNVGEEQA---SMVKESSLEALGYICEDIDPEVLEQQ 169 (859)
T ss_pred ----CccchHHHHHHHHHHhhCch--------hhCHHHHHHHHHhcccccc---hHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 45556777777777 3332 2345555555443222111 16889999999999985444322222
Q ss_pred hcCChHHHHHhhcC--CCHHHHHHHHHHHHHhccCCccchH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh
Q 008781 205 MEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (554)
Q Consensus 205 ~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 281 (554)
...++..++.-... ++..+|..|+.+|.|.......|-. ..-..=+++.....-.+++.+++..|..||..|..-.-
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 24566777776654 5678999999999997653221211 11122244555667778999999999999999977544
Q ss_pred hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCccc---------------HHHHH---HcCCHHHHHHHhC
Q 008781 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---------------KVHIV---QRGAVRPLIEMLQ 343 (554)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~---------------~~~~~---~~~~~~~L~~~l~ 343 (554)
+.-+.-+...++..-+.-+.+.++++...+....+++|...-+. ...+. -.+++|.|+++|.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 44444455556777777788999999999999999887432110 01111 1367788888886
Q ss_pred C-------CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCc
Q 008781 344 S-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (554)
Q Consensus 344 ~-------~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 416 (554)
. +++....+|..+|.-+++..++ .++. .+++.+-.-+.++++.-+..++.+++.+...++.....-
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D--~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~---- 402 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGD--DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTP---- 402 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHhcc--cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhH----
Confidence 3 2345666666677666653222 1222 334444456678899999999999999987765432110
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch-hh-HHHHHcCcHHHH
Q 008781 417 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QR-TIFIDGGGLELL 494 (554)
Q Consensus 417 i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~~~~l~~L 494 (554)
.-.+.++.++.++.++.-.++..++|+++.++..-. .+ ........++.+
T Consensus 403 ----------------------------iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 403 ----------------------------IVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSAL 454 (859)
T ss_pred ----------------------------HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHH
Confidence 122347899999998888999999999999976633 11 122223334444
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 495 LGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 495 ~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+.-+ .+.|.+...++|++.+|+....
T Consensus 455 ~~gL-~DePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 455 LEGL-NDEPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred HHHh-hhCchHHHHHHHHHHHHHHHHH
Confidence 4444 4788999999999999997643
No 45
>PTZ00429 beta-adaptin; Provisional
Probab=99.17 E-value=1.8e-07 Score=98.72 Aligned_cols=386 Identities=13% Similarity=0.052 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (554)
|...+.-.--.|.+++. +++..-. ++..|.+=+.++++ .+|-.|++.++++-.. +.-+.
T Consensus 81 d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np------------~IRaLALRtLs~Ir~~-~i~e~-- 140 (746)
T PTZ00429 81 DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSP------------VVRALAVRTMMCIRVS-SVLEY-- 140 (746)
T ss_pred CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCCcH-HHHHH--
Confidence 44556666666666776 4553322 26667776666665 8999999999887632 22111
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
.++.+.+.+.+.++ .+++.|+.++.++...+++ .+...+.++.|.+++.+.++.+...|+.+|..+
T Consensus 141 ---l~~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 141 ---TLEPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred ---HHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 24556777776665 9999999999999876664 244567889999999999999999999999999
Q ss_pred ccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHH
Q 008781 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~ 314 (554)
...++... -...+.+..++..+.+-++-.+...+.+|.... +...... ..++..+...|++.++.|...|+.+
T Consensus 207 ~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~ 279 (746)
T PTZ00429 207 NDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKV 279 (746)
T ss_pred HHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 86444322 223345677777777777777887777775542 2211111 2467788888999999999999999
Q ss_pred HHHHhcCC-cccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHH
Q 008781 315 LGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393 (554)
Q Consensus 315 L~nl~~~~-~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 393 (554)
+.++.... ++....+. ..+.+.++.+ .+.++.++..++..+.-+.... ..+... -+..+.-..++ ...++..
T Consensus 280 il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~---P~lf~~-~~~~Ff~~~~D-p~yIK~~ 352 (746)
T PTZ00429 280 VANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIF---PNLLRT-NLDSFYVRYSD-PPFVKLE 352 (746)
T ss_pred HHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC---HHHHHH-HHHhhhcccCC-cHHHHHH
Confidence 99987432 12111111 1233556665 4567789999888887777533 222222 13333333333 4458999
Q ss_pred HHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHH---HhhchHHHHHHHHhhCCHHHHHHHHH
Q 008781 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK---IHGRVLNHLLYLMRVAEKGVQRRVAL 470 (554)
Q Consensus 394 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~l~~L~~ll~~~~~~v~~~a~~ 470 (554)
.+.+|..++. ++|...+++. ..+-..+ .+.... .-..+++.++..+ ....++..|+.++..... +...++.
T Consensus 353 KLeIL~~Lan-e~Nv~~IL~E-L~eYa~d--~D~ef~-r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~-~v~e~i~ 426 (746)
T PTZ00429 353 KLRLLLKLVT-PSVAPEILKE-LAEYASG--VDMVFV-VEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPE-LLPQVVT 426 (746)
T ss_pred HHHHHHHHcC-cccHHHHHHH-HHHHhhc--CCHHHH-HHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCch-hHHHHHH
Confidence 9999999984 4455554432 0000000 000111 1111222222222 244567777777765433 4446677
Q ss_pred HHHhhcCCchhhHHHHHcCcHHHHHHhh---CCCChhHHHHHHHHHHHHHhhcC
Q 008781 471 ALAHLCSPDDQRTIFIDGGGLELLLGLL---GSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 471 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
++.++........ .+..|+..+ .-.+++.+....|.|...+...+
T Consensus 427 vik~IlrkyP~~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~ 474 (746)
T PTZ00429 427 AAKDIVRKYPELL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE 474 (746)
T ss_pred HHHHHHHHCccHH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh
Confidence 7777744322221 245555433 23556677777888887766543
No 46
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.17 E-value=1.6e-09 Score=102.52 Aligned_cols=294 Identities=19% Similarity=0.241 Sum_probs=216.0
Q ss_pred HHHHhcCChHHHHHhhcCCCHH--HHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 008781 201 TRVRMEGGIPPLVELLEFTDTK--VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~ 277 (554)
..+...|++..|++++..++.. ++..+.+.|-.+.. .+|++.+...| +..++.+.+ .+.++.....+..|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 3567789999999999988764 68899999999984 68888888776 566666665 456788999999999999
Q ss_pred ccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCC-cccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHH
Q 008781 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356 (554)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~ 356 (554)
.++++..+.++..|+++.++-+.+..++.+.++++.+|+|++-.. ...++.+++..+...|..+..+.|.-+|..||.+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 999999999999999999999999989999999999999997543 3456678888888888888888888999999999
Q ss_pred HHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHH
Q 008781 357 LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 436 (554)
Q Consensus 357 L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~ 436 (554)
++-++.+.+....+..+|.+..+-.++.+-++.- ++++.. ....-
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~h---d~aQG---------------------- 375 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPGR----------FARDAH---DYAQG---------------------- 375 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccCcch----------hhhhhh---hhhcc----------------------
Confidence 9999987776666666776655555554444321 111100 00000
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch---hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHH
Q 008781 437 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 513 (554)
Q Consensus 437 ~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 513 (554)
...+.+.+|+++|.+..-+.|.-++.-++.=+.... ....|-+.|+|+.|.++.++++.--...|..+|
T Consensus 376 --------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseAL 447 (832)
T KOG3678|consen 376 --------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEAL 447 (832)
T ss_pred --------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 122347889999987666666655555544333222 345677889999999999999988888999999
Q ss_pred HHHHhhcC-cCcccccCCCCCCcccccc
Q 008781 514 FKLANKAT-TLSSVDAAPPSPTPQVRFK 540 (554)
Q Consensus 514 ~~L~~~~~-~~~~~~~~~~~~~~~~~l~ 540 (554)
.-+.+.-+ ....-+..|...+.|.++.
T Consensus 448 tviGEEVP~~l~~qVPgWt~AdVQ~Wvk 475 (832)
T KOG3678|consen 448 TVIGEEVPYKLAQQVPGWTCADVQYWVK 475 (832)
T ss_pred HHhccccChhhhccCCCcchHHHHHHHH
Confidence 98877543 2223344555555555443
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.7e-09 Score=95.46 Aligned_cols=187 Identities=23% Similarity=0.296 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (554)
+-++.|+.-|..+++ +-++...+...|+...++..+++++..+|..|++++..++.++|..+..+++.|+++.|+..+.
T Consensus 98 e~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 98 EDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 777888888888888 6666777889999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc--CChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHH
Q 008781 260 SE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (554)
Q Consensus 260 ~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~ 336 (554)
++ +..++..|+.+++.+..+++.....+...++...|..++++ .+...++.++..+..+...+......+...++..
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~ 256 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR 256 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Confidence 54 56788999999999999988888899998999999999998 5677889999999999877666666666677777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc
Q 008781 337 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (554)
Q Consensus 337 ~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~ 367 (554)
.+..+....+.++.+.++.++..+......+
T Consensus 257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 257 VLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 7888888888899999999988877544333
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.9e-07 Score=94.29 Aligned_cols=289 Identities=16% Similarity=0.210 Sum_probs=218.0
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (554)
|+.|+.-+.+... ++=|+.|++.|-.++ .++|..+... ++++|++.|..+..++ ++...+
T Consensus 24 I~kLcDRvessTL-----------~eDRR~A~rgLKa~s--rkYR~~Vga~-Gmk~li~vL~~D~~D~------E~ik~~ 83 (970)
T KOG0946|consen 24 IEKLCDRVESSTL-----------LEDRRDAVRGLKAFS--RKYREEVGAQ-GMKPLIQVLQRDYMDP------EIIKYA 83 (970)
T ss_pred HHHHHHHHhhccc-----------hhhHHHHHHHHHHHH--HHHHHHHHHc-ccHHHHHHHhhccCCH------HHHHHH
Confidence 5666665555543 156778888888877 5566666655 5788999998876655 999999
Q ss_pred HHHHHHHhhcCc------h----------hHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCc-cchHHHH-
Q 008781 186 ADAITNLAHENS------S----------IKTR-VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIV- 246 (554)
Q Consensus 186 ~~~L~~L~~~~~------~----------~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~- 246 (554)
+.++.++...++ . .... +...+.|..++..+...|-.||..+...|.++....+ +.+..+.
T Consensus 84 LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 84 LDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred HHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999987442 1 1112 2335788999999999999999999999999987654 3445544
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC---C-hHHHHHHHHHHHHHhcCC
Q 008781 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---C-SESQREAALLLGQFAATD 322 (554)
Q Consensus 247 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---~-~~~~~~a~~~L~nl~~~~ 322 (554)
..-++..++.+|++....+|..++-.|..++.+++..++.+.-.+++..|+.++... + .-+...|...|-||...+
T Consensus 164 ~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 457899999999999999999999999999999999988888889999999999752 2 357788899999999888
Q ss_pred cccHHHHHHcCCHHHHHHHhCC---CC-----HH-----HHHHHHHHHHHHhcCC-------CcchhhhhcCCHHHHHHH
Q 008781 323 SDCKVHIVQRGAVRPLIEMLQS---PD-----VQ-----LREMSAFALGRLAQDM-------HNQAGIAHNGGLVPLLKL 382 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~~l~~---~~-----~~-----v~~~a~~~L~~L~~~~-------~~~~~l~~~~~l~~L~~l 382 (554)
..++..+.+.+.+|.|..+|.- ++ +. -...++.++..+.... .+++.+...+++..|..+
T Consensus 244 ~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~i 323 (970)
T KOG0946|consen 244 ISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTI 323 (970)
T ss_pred cchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHH
Confidence 8999999999999999988762 22 11 1234555555555322 233567888999999998
Q ss_pred hcCC--ChhHHHHHHHHHHHcccCC-cchhHHHhh
Q 008781 383 LDSK--NGSLQHNAAFALYGLADNE-DNVADFIRV 414 (554)
Q Consensus 383 l~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~ 414 (554)
+.++ ..+|+..+.-++.++.++. .+...|.+.
T Consensus 324 l~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 324 LMHPGVPADILTESIITVAEVVRGNARNQDEFADV 358 (970)
T ss_pred HcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence 8665 4678888888888887653 445555554
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=99.10 E-value=3.7e-07 Score=96.37 Aligned_cols=368 Identities=13% Similarity=0.054 Sum_probs=225.6
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
.|=+.-|-..|++.+.. +-+...-+++..++.+.+... +.+.+++++...+. +++
T Consensus 31 kge~~ELr~~L~s~~~~-----------~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~--------elK 85 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSY-----------RKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDL--------ELK 85 (746)
T ss_pred cchHHHHHHHHHCCCHH-----------HHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCH--------HHH
Confidence 34455566666655441 334444456667764444322 34556677766654 888
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (554)
+.+.-.+.+++..+++.... .+..+.+-+.++++.+|..|+++|+++-. +. +++. +++.+.+.+.+.+
T Consensus 86 KLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~----i~e~-l~~~lkk~L~D~~ 153 (746)
T PTZ00429 86 KLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SS----VLEY-TLEPLRRAVADPD 153 (746)
T ss_pred HHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HH----HHHH-HHHHHHHHhcCCC
Confidence 88888888888766654322 35788888889999999999999988764 22 2221 4567778888999
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l 342 (554)
+.||+.|+.++..+...+++ .+...+.++.|..+|.+.++.+...|+.+|..+...++.. .-...+.+..++..+
T Consensus 154 pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L 228 (746)
T PTZ00429 154 PYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHL 228 (746)
T ss_pred HHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHh
Confidence 99999999999999765553 3345678889999999999999999999999997554432 223344566777777
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC--cchhHHHhhCccccc
Q 008781 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKL 420 (554)
Q Consensus 343 ~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L 420 (554)
.+.++..+...+.+|.... +..... ....+..+...+++.++.|...|+.++.++.... +........ ...+|
T Consensus 229 ~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pL 303 (746)
T PTZ00429 229 PECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVR-VNTAL 303 (746)
T ss_pred hcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHH
Confidence 7767777777777775432 111111 1245677778888889999999999999887542 111111100 00111
Q ss_pred cchhhhhhhhHHHHHHHH------------------------------HHHHHH-------HhhchHHHHHHHHhhCCHH
Q 008781 421 QDGEFIVQATKDCVAKTL------------------------------KRLEEK-------IHGRVLNHLLYLMRVAEKG 463 (554)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~------------------------------~~l~~~-------~~~~~l~~L~~ll~~~~~~ 463 (554)
+.........+-.+...+ .+++.+ .-..++..|.....+.+.+
T Consensus 304 v~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~e 383 (746)
T PTZ00429 304 LTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMV 383 (746)
T ss_pred HHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHH
Confidence 110000000000000000 111111 1233556666666667777
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCc
Q 008781 464 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 464 v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
++..++++++.++..-+. .....+..|++++..+.. +..++..++.++.+.-+.
T Consensus 384 f~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 384 FVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCcc
Confidence 888888888887654221 122346677777765433 444677777777765443
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3e-08 Score=100.61 Aligned_cols=219 Identities=18% Similarity=0.192 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHH
Q 008781 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (554)
Q Consensus 55 ~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~ 133 (554)
+...||.++.+|..- + +.+++..|+++|.+++. -|.....+++.++||.|+.-|..-..- ++.
T Consensus 209 v~slvp~Lv~LL~~E----~-n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi-----------DvA 272 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHE----H-NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI-----------DVA 272 (1051)
T ss_pred HHHHHHHHHHHHhcc----c-cHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh-----------HHH
Confidence 344555555555433 3 56799999999999999 699999999999999999866544331 899
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc-hhHHHHHhcCChHH
Q 008781 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPP 211 (554)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~i~~ 211 (554)
++++.+|-.|+ .. -..+.+.|++...+.+|.-... .+++.|+.+..|.|..-. +.-..+ ...+|.
T Consensus 273 EQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi--------~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPl 339 (1051)
T KOG0168|consen 273 EQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSI--------HAQRVALAIAANCCKSIRSDEFHFV--MEALPL 339 (1051)
T ss_pred HHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccchHH--HHHHHH
Confidence 99999999999 33 3578899999999999998876 899999999999997321 111122 357899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccC---CccchHHHHhcCCHHHHHHhhcCC----CHHHHHHHHHHHHHHhccChhhH
Q 008781 212 LVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIK 284 (554)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~ 284 (554)
|..+|...|....+.++-|+..++.. .++.-+.+...|++....+++.-. +..+....++.|..++++.+...
T Consensus 340 L~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~ 419 (1051)
T KOG0168|consen 340 LTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLF 419 (1051)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHH
Confidence 99999999999999999999988753 455567788899999999988743 33566677888888988888888
Q ss_pred HHHHHcCCHHHHHHHhcc
Q 008781 285 KEVLAAGALQPVIGLLSS 302 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~ 302 (554)
..+...++...+..+|..
T Consensus 420 ~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 420 RTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHhhHHHHHHHHHhc
Confidence 888888999999998864
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.08 E-value=1.3e-07 Score=89.11 Aligned_cols=344 Identities=15% Similarity=0.167 Sum_probs=229.3
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc------CChHHHHHhhcCCCHHHHHHHHHHH
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME------GGIPPLVELLEFTDTKVQRAAAGAL 231 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~~L 231 (554)
.+..++.+++....+ +....++..+..+...+...-..+... ..-...+.++...+..+...+.+++
T Consensus 66 ~v~~fi~LlS~~~kd-------d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Il 138 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKD-------DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRIL 138 (442)
T ss_pred HHHHHHHHhchhhhH-------HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHH
Confidence 467788888876664 777788888887776554433332221 2356788889899998888888888
Q ss_pred HHhccCCccch---HHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc--cCCh
Q 008781 232 RTLAFKNDENK---NQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCS 305 (554)
Q Consensus 232 ~~l~~~~~~~~---~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~ 305 (554)
..++....... ..-.. ...|-..+.+ .+...+..+++||..+... ++.+-.++..+++..++..+. .++.
T Consensus 139 s~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~ 214 (442)
T KOG2759|consen 139 SKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGF 214 (442)
T ss_pred HHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcch
Confidence 88875332221 11111 2233444544 6777888999999999876 566777888888888888883 2456
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCCcc-------hhhhhcCCHH
Q 008781 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQ-------AGIAHNGGLV 377 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~~~-------~~l~~~~~l~ 377 (554)
.++...+.|+.-|+ ..+.....+...+.++.|..++++ ....|.+-++.++.|+....+.+ ..++..++.+
T Consensus 215 QlQYqsifciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k 293 (442)
T KOG2759|consen 215 QLQYQSIFCIWLLT-FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLK 293 (442)
T ss_pred hHHHHHHHHHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchH
Confidence 78899999999997 456665667778999999999995 45678889999999998766322 2344445544
Q ss_pred HHHHHhcC--CChhHHHHHHHHHHHcc-------cCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhc
Q 008781 378 PLLKLLDS--KNGSLQHNAAFALYGLA-------DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (554)
Q Consensus 378 ~L~~ll~~--~~~~v~~~a~~~L~~l~-------~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (554)
.+-.+-.. .++++....-..-..|- ..++...+ +..|-++ +. ....+..-+.++..++.+ -+..
T Consensus 294 ~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sE-l~sG~L~----WS-P~Hk~e~FW~eNa~rlne-nnye 366 (442)
T KOG2759|consen 294 TLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSE-LRSGRLE----WS-PVHKSEKFWRENADRLNE-NNYE 366 (442)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HHhCCcC----CC-ccccccchHHHhHHHHhh-ccHH
Confidence 44444322 35555443333322222 22222111 2223211 00 011122223333333322 2455
Q ss_pred hHHHHHHHHhhC-CHHHHHHHHHHHHhhcCC-chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 449 VLNHLLYLMRVA-EKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 449 ~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+++.|+.++..+ +|.+-.-|+.=++.+... |+++..+.+.||-+.+.+++.++|++|+..|..++..|.-+.
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 789999999875 488888888889988665 778999999999999999999999999999999999987764
No 52
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=2.9e-08 Score=103.52 Aligned_cols=426 Identities=18% Similarity=0.143 Sum_probs=288.7
Q ss_pred chhhhccchhhhccchhhhhhhhhhhccccCCCCCchhhhhhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-
Q 008781 14 RKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK- 92 (554)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~- 92 (554)
-|...|.....++ .+..+|+++..+...+.....-+...... .++..+.+.... +...++..|...+.++..
T Consensus 234 vk~elr~~~~~lc--~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s---~v~~~~~~L~~D--dqdsVr~~a~~~~~~l~~l 306 (759)
T KOG0211|consen 234 VKRELRPIVQSLC--QDDTPMVRRAVASNLGNIAKVLESEIVKS---EVLPTLIQLLRD--DQDSVREAAVESLVSLLDL 306 (759)
T ss_pred HHHHHHHHHHhhc--cccchhhHHHHHhhhHHHHHHHHHHHHHh---hccHHHhhhhhc--chhhHHHHHHHHHHHHHHh
Confidence 3667778888888 89999999999876555443333322222 222223222211 133478888887777765
Q ss_pred --ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhc
Q 008781 93 --NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKR 168 (554)
Q Consensus 93 --~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~ 168 (554)
.+. =......+.++......+. .++.........++ .+++ .....-++....+++.
T Consensus 307 ~~~~~----d~~~~~~~~l~~~~~d~~~------------~v~~~~~~~~~~L~~~~~~~----~~~~~~~~~~~~l~~~ 366 (759)
T KOG0211|consen 307 LDDDD----DVVKSLTESLVQAVEDGSW------------RVSYMVADKFSELSSAVGPS----ATRTQLVPPVSNLLKD 366 (759)
T ss_pred cCCch----hhhhhhhHHHHHHhcChhH------------HHHHHHhhhhhhHHHHhccc----cCcccchhhHHHHhcc
Confidence 231 1112346777777776665 77777777777666 2221 1112335667777776
Q ss_pred cccCccccchhHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHh
Q 008781 169 HMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (554)
Q Consensus 169 ~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 247 (554)
... +.+..++.-...++.. +...+..+.....+|.+..++.+.+..++.+.+..+..+.--.+ +...+
T Consensus 367 ~~~--------e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti- 435 (759)
T KOG0211|consen 367 EEW--------EVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI- 435 (759)
T ss_pred hhh--------hhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-
Confidence 654 6666666666666542 22333445566678999999999999999887777766653222 22222
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHH
Q 008781 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (554)
Q Consensus 248 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 327 (554)
....+.++..+++..+.|+....+.+..+-..++...........++.+..+-.+..+.++.+..+.+..++... ..
T Consensus 436 ~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~---~~ 512 (759)
T KOG0211|consen 436 SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL---GV 512 (759)
T ss_pred cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh---hh
Confidence 235778888899999999999998887776666666667777788899998888888999999999888887432 24
Q ss_pred HHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc
Q 008781 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 328 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
.+.+...-+.+..++.+....+++.|+..+..++.... ..+.....++.++....++++..|...+.++..++.--..
T Consensus 513 ~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ 590 (759)
T KOG0211|consen 513 EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ 590 (759)
T ss_pred HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc
Confidence 45555577778888888889999999999999986443 4455566788888887777788888888777755422111
Q ss_pred hhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008781 408 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 487 (554)
Q Consensus 408 ~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 487 (554)
+++...+++.+..+..++.++||.++++.|..+...-... ..+
T Consensus 591 -----------------------------------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~--~~~ 633 (759)
T KOG0211|consen 591 -----------------------------------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES--VRD 633 (759)
T ss_pred -----------------------------------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH--HHH
Confidence 2234446788888889999999999999999885442211 234
Q ss_pred cCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 488 GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 488 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
....+.+..+..+.+.+++..|..+...+...
T Consensus 634 ~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 634 EEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 44567788888888889999888887776654
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.2e-06 Score=88.55 Aligned_cols=332 Identities=15% Similarity=0.187 Sum_probs=236.4
Q ss_pred hHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHH
Q 008781 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 56 ~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (554)
...|+.++..+.+.- =.+-+..|++.|..+++ .+|..++ ..+++.|++.|+.+.. |+++...
T Consensus 21 aETI~kLcDRvessT-----L~eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~----------D~E~ik~ 82 (970)
T KOG0946|consen 21 AETIEKLCDRVESST-----LLEDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYM----------DPEIIKY 82 (970)
T ss_pred HhHHHHHHHHHhhcc-----chhhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccC----------CHHHHHH
Confidence 344667776665541 12345688888888884 5565555 4458999999998766 5699999
Q ss_pred HHHHHHHhc-CCh------h----------hHHHHH-HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcC-
Q 008781 136 SAFALGLLA-VKP------E----------HQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN- 196 (554)
Q Consensus 136 a~~~L~~l~-~~~------~----------~~~~i~-~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~- 196 (554)
++..+.++. .++ + +.+.++ ..+.|..++..+...+- .+|..++..|.++....
T Consensus 83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--------~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--------HVRLYAIQLLSALLSCRP 154 (970)
T ss_pred HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--------hhhhHHHHHHHHHHhcCC
Confidence 999999988 331 1 123333 34788899999987765 89999999999997644
Q ss_pred chhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC----CHHHHHHHHH
Q 008781 197 SSIKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE----DSAIHYEAVG 271 (554)
Q Consensus 197 ~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~----~~~v~~~a~~ 271 (554)
.+.+..+.. .-+|..++.+|.+..+.+|-.++-.|..++.+++..++.+.=.+++..|..++..+ ..-|...|+.
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 344554444 67899999999999999999999999999987777777766678899999999743 2368899999
Q ss_pred HHHHHhccChhhHHHHHHcCCHHHHHHHhcc---CC-----hHHHH-----HHHHHHHHHhcCC------cccHHHHHHc
Q 008781 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---CC-----SESQR-----EAALLLGQFAATD------SDCKVHIVQR 332 (554)
Q Consensus 272 ~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~---~~-----~~~~~-----~a~~~L~nl~~~~------~~~~~~~~~~ 332 (554)
.|-||...+..++..+.+.+.++.|.++|.. .+ |..++ .++.++..+.+-+ ..++..+...
T Consensus 235 ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss 314 (970)
T KOG0946|consen 235 LLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSS 314 (970)
T ss_pred HHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Confidence 9999999988898999999999999988753 22 22222 3444555554322 2355667788
Q ss_pred CCHHHHHHHhCCC--CHHHHHHHHHHHHHHhcCC-CcchhhhhcCC------HHHH----HHHhcC-CChhHHHHHHHHH
Q 008781 333 GAVRPLIEMLQSP--DVQLREMSAFALGRLAQDM-HNQAGIAHNGG------LVPL----LKLLDS-KNGSLQHNAAFAL 398 (554)
Q Consensus 333 ~~~~~L~~~l~~~--~~~v~~~a~~~L~~L~~~~-~~~~~l~~~~~------l~~L----~~ll~~-~~~~v~~~a~~~L 398 (554)
+++..|+.++-++ ..+++..+.-++.++.++. .++..+....+ .+.+ +.+..+ .....|.++++++
T Consensus 315 ~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf 394 (970)
T KOG0946|consen 315 HLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCF 394 (970)
T ss_pred chHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHH
Confidence 9999999998865 4578999999999998765 44554443211 1222 222233 4567888888877
Q ss_pred HHc-ccCCcchhHHHh
Q 008781 399 YGL-ADNEDNVADFIR 413 (554)
Q Consensus 399 ~~l-~~~~~~~~~~~~ 413 (554)
..+ ..+.+....|+.
T Consensus 395 ~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 395 RSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHhcchhhHHHHHH
Confidence 766 455666666555
No 54
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=5.2e-08 Score=87.93 Aligned_cols=301 Identities=16% Similarity=0.152 Sum_probs=199.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
-.++.++.+.+|.++..|...+..++.. ..+.... +...++.+..++...++ ...|+.+|.|++.. +..++.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 4678899999999999999999999863 2222222 23567788888887766 77899999999875 56667777
Q ss_pred HcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHH------cCCHHHHHHHhCCC-C-HHHHHHHHHHHHHH
Q 008781 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSP-D-VQLREMSAFALGRL 360 (554)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~------~~~~~~L~~~l~~~-~-~~v~~~a~~~L~~L 360 (554)
+. ++..++..+.++.+......+..|+|++..+......... .|.+.........+ + ..--.+.+..++||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 66 8888899998888889999999999998765544433321 45555555555532 2 12345677889999
Q ss_pred hcCCCcchhhhhcCCHHH-HHHHhcCCChhHHH-HHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHH
Q 008781 361 AQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQH-NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (554)
Q Consensus 361 ~~~~~~~~~l~~~~~l~~-L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~ 438 (554)
++....|..+.....++. .+.-+.+.+..+|. ..+++|.|.+-+......++..+ +..|.--......+.
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~-~~lLp~iLlPlagpe------- 231 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDES-INLLPAILLPLAGPE------- 231 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcch-HHHHHHHHhhcCCcc-------
Confidence 998888887766553222 22223334555544 56779999998887777766632 211110000000000
Q ss_pred HHHHHHHhhchHHHHHHHH-----hhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHH
Q 008781 439 KRLEEKIHGRVLNHLLYLM-----RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVA 512 (554)
Q Consensus 439 ~~l~~~~~~~~l~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~ 512 (554)
.+.+---.+.-..| .++ +.+++.|+..-+.+|.-||....+|..+...|+-+.+-++-. .+++++++.+-..
T Consensus 232 -e~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 232 -ELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQV 309 (353)
T ss_pred -ccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHH
Confidence 00000000111222 333 247899999999999999999999999999988888877765 5788888877777
Q ss_pred HHHHHhhcCcCccc
Q 008781 513 LFKLANKATTLSSV 526 (554)
Q Consensus 513 L~~L~~~~~~~~~~ 526 (554)
...+.+..+.....
T Consensus 310 vq~Lv~~e~~~G~~ 323 (353)
T KOG2973|consen 310 VQMLVRLEPEIGIL 323 (353)
T ss_pred HHHHHhcccccchh
Confidence 77777755444433
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.99 E-value=2.7e-08 Score=96.00 Aligned_cols=227 Identities=22% Similarity=0.267 Sum_probs=159.1
Q ss_pred CChHHHHHHHhcc-ccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc------CChHHHHHhhcCCCHHHHHHHHH
Q 008781 157 GALSHLVNLLKRH-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME------GGIPPLVELLEFTDTKVQRAAAG 229 (554)
Q Consensus 157 g~l~~L~~lL~~~-~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~ 229 (554)
++...++++|+.. ... +++...+..+..++.+++.....+... .....+++++.++|..++..++.
T Consensus 55 ~~~~~~l~lL~~~~~~~-------d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~ 127 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSND-------DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAF 127 (312)
T ss_dssp -------HHHHHH---H-------HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcH-------HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHH
Confidence 3467777888776 332 999999999999999888766666551 25678888999999999999999
Q ss_pred HHHHhccCCccchHHHHhcCCHHHHHHhhcC----CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh-----
Q 008781 230 ALRTLAFKNDENKNQIVECNALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL----- 300 (554)
Q Consensus 230 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL----- 300 (554)
.|..+....+....... .+.++.++..+++ ++.+++..++.+|.++... +..+..+.+.++++.+..++
T Consensus 128 iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~ 205 (312)
T PF03224_consen 128 ILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQAT 205 (312)
T ss_dssp HHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH----
T ss_pred HHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcc
Confidence 99999875544433322 3456666666653 4566789999999999854 78889999999999999999
Q ss_pred cc--CChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCC--cchhhhhcCC
Q 008781 301 SS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMH--NQAGIAHNGG 375 (554)
Q Consensus 301 ~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~--~~~~l~~~~~ 375 (554)
.+ ....++.+++.+++-++ .+++....+...++++.|+.+++ .....+.+-++.++.|+..... ....++..++
T Consensus 206 ~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~ 284 (312)
T PF03224_consen 206 NSNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL 284 (312)
T ss_dssp -----HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred cCCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence 22 23577889999999996 66777777888889999999998 4677899999999999997765 5566677666
Q ss_pred HHHHHHHhcC--CChhHHHH
Q 008781 376 LVPLLKLLDS--KNGSLQHN 393 (554)
Q Consensus 376 l~~L~~ll~~--~~~~v~~~ 393 (554)
++.+-.+... .|+++...
T Consensus 285 l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 285 LKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHH
Confidence 6665555533 45666544
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.98 E-value=2.2e-08 Score=96.65 Aligned_cols=226 Identities=19% Similarity=0.227 Sum_probs=164.5
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHH------cCCHHHHHHHhccCChHHHHHHHHHHHHHhcCC
Q 008781 251 LPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (554)
Q Consensus 251 ~~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 322 (554)
...++++|+ ++++++....+..+..+....+...+.+.. ......++.++..++.-+...++.+|..+...+
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 445555555 468899999999999998887776666654 236788888888899999999999999998766
Q ss_pred cccHHHHHHcCCHHHHHHHhCC----CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh-----cC--CChhHH
Q 008781 323 SDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-----DS--KNGSLQ 391 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~~l~~----~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll-----~~--~~~~v~ 391 (554)
+....... .+.++.++.++.+ ++...+..++.+|.+|.+.+..|..+++.++++.+.+++ .+ .+.+++
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 55443322 4567888888774 445677899999999999999999999999999999999 22 346789
Q ss_pred HHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhh-CCHHHHHHHHH
Q 008781 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVAL 470 (554)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~ 470 (554)
..++.+++.|+-+++....+...+ +++.|+.+++. ....|.+-++.
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~---------------------------------~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKY---------------------------------LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTS---------------------------------HHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHhccc---------------------------------hHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999888777776655 36788888866 67889999999
Q ss_pred HHHhhcCCch--hhHHHHHcCcHHHHHHhhC--CCChhHHHHHH
Q 008781 471 ALAHLCSPDD--QRTIFIDGGGLELLLGLLG--STNPKQQLDGA 510 (554)
Q Consensus 471 ~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~ 510 (554)
++.|++.... ....++..|+++.+..+.. -+|+++...-.
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999987766 7788888888888888876 36777766543
No 57
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.98 E-value=4.6e-07 Score=85.55 Aligned_cols=318 Identities=14% Similarity=0.205 Sum_probs=212.5
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHH-------hCCChHHHHHhhcCCCCCccccCCCcch
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIV-------EGGAVPALVKHLQAPPTSEADRNLKPFE 129 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-------~~g~v~~Lv~lL~~~~~~~~~~~~~~~~ 129 (554)
..+..++.++.... ..+....++..+..+.+....+..+. ..-.-..++.+|...+.
T Consensus 65 ~~v~~fi~LlS~~~-----kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~----------- 128 (442)
T KOG2759|consen 65 QYVKTFINLLSHID-----KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDT----------- 128 (442)
T ss_pred HHHHHHHHHhchhh-----hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCCh-----------
Confidence 34445555544431 22344556666677666333333222 12345677888888776
Q ss_pred HHHHHHHHHHHHHhc-CChhhH---HHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh
Q 008781 130 HEVEKGSAFALGLLA-VKPEHQ---QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~-~~~~~~---~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 205 (554)
-+...+.++++.++ .++..- +.-.. ...|-..+.+..+. +.+..++.+|..+.. .++.|..+..
T Consensus 129 -~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~-------~~~~~~~rcLQ~ll~-~~eyR~~~v~ 196 (442)
T KOG2759|consen 129 -FIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNN-------DYIQFAARCLQTLLR-VDEYRYAFVI 196 (442)
T ss_pred -HHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCC-------chHHHHHHHHHHHhc-Ccchhheeee
Confidence 77777999999998 443321 11111 23334444442222 778889999999988 6777888888
Q ss_pred cCChHHHHHhhcC--CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCh-
Q 008781 206 EGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSP- 281 (554)
Q Consensus 206 ~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~- 281 (554)
..++..++..+.+ .+..++...+.|++.++. ++...+.+...+.++.|..+++. ..+.|.+-++.++.|+....+
T Consensus 197 adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 197 ADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred cCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 9999999988843 467899999999999998 67666777788999999999985 467899999999999987664
Q ss_pred -----hhHHHHHHcCCHHHHHHHhcc--CChHHHHHHHHH-------HHHHhcCC--------------c---------c
Q 008781 282 -----NIKKEVLAAGALQPVIGLLSS--CCSESQREAALL-------LGQFAATD--------------S---------D 324 (554)
Q Consensus 282 -----~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~a~~~-------L~nl~~~~--------------~---------~ 324 (554)
+....++..++.+.+-.+-.. ++.++....-.. ...|++.+ | +
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 333455555555555555443 233333222111 11122111 1 1
Q ss_pred cHHHHHHc--CCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCC-CcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 008781 325 CKVHIVQR--GAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 400 (554)
Q Consensus 325 ~~~~~~~~--~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 400 (554)
+...+-+. .++..|+.+|+. .||.+...||.=++...++- +.+..+...|+=..+++++++++++|+..|+.++..
T Consensus 356 Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~ 435 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQK 435 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 22233332 467889999985 56888889999999998754 556667788999999999999999999999999887
Q ss_pred ccc
Q 008781 401 LAD 403 (554)
Q Consensus 401 l~~ 403 (554)
+..
T Consensus 436 lm~ 438 (442)
T KOG2759|consen 436 LMV 438 (442)
T ss_pred HHh
Confidence 643
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.98 E-value=3.9e-08 Score=93.33 Aligned_cols=278 Identities=21% Similarity=0.242 Sum_probs=204.2
Q ss_pred hhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCcc
Q 008781 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNC 174 (554)
Q Consensus 95 ~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~ 174 (554)
..++.+...|+++.|++++.+++.. ..++..|.+.|..+. ..++++.++..| +..++.+-+.....
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~e----------t~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~-- 236 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLE----------TSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPV-- 236 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchh----------HHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcH--
Confidence 3455677789999999999999872 267999999998876 346778888777 77777777554443
Q ss_pred ccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHH
Q 008781 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPT 253 (554)
Q Consensus 175 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~ 253 (554)
++.+..+.+|.++..++++....+...|++..++..++..++.+..+++-+|.|++-+ ..+.++.+++..+-+.
T Consensus 237 -----e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EW 311 (832)
T KOG3678|consen 237 -----ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEW 311 (832)
T ss_pred -----HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999864 3456777888888889
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcC
Q 008781 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (554)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 333 (554)
|..+..+.|+-.|..||-+.+.|+.. .+....+...|.+..+-.++.+-++.. ++....+. .+-...+
T Consensus 312 LF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~-aQG~~~d 379 (832)
T KOG3678|consen 312 LFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDY-AQGRGPD 379 (832)
T ss_pred hhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhh-hccCChH
Confidence 99888888899999999999999765 555566667777766666666555432 11110000 0001123
Q ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHhc--CCCcc-hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHccc
Q 008781 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQ--DMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (554)
Q Consensus 334 ~~~~L~~~l~~~~~~v~~~a~~~L~~L~~--~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (554)
-++.|+.+|.+...+.+..++.-++.=+. ...++ ..+-+-|+|+.|-++.++.+..-...|-.+|..+-.
T Consensus 380 ~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 380 DLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 56788888887666666655555544332 22333 335667889999999998776666666667766654
No 59
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.1e-06 Score=80.05 Aligned_cols=353 Identities=15% Similarity=0.138 Sum_probs=225.3
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CCh--hhH--HHHHHcCChHHHHHHHhccccCccccchhH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP--EHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~--~~~--~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~ 180 (554)
.|.|-.-|..++. .|+..++..++-+. +.+ ... ..++..|.++.++..+-..+. +
T Consensus 84 mpdLQrGLiadda------------sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--------e 143 (524)
T KOG4413|consen 84 MPDLQRGLIADDA------------SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--------E 143 (524)
T ss_pred hHHHHhcccCCcc------------hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--------H
Confidence 4445455555555 77888888888777 333 222 345588999999999988877 9
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChH--HHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGIP--PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~--~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (554)
+...|...+..++. .+..-..+....... .+..+-...+.-.+...+..+..+.+-+++.......+|.+..|..-+
T Consensus 144 VAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 144 VAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 99999999999998 555455555554442 334444455666777888888888877888888888899999998877
Q ss_pred cC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCC--hHHHHHHHHHHHHHhc----CCcccHHHHHH
Q 008781 259 RS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAA----TDSDCKVHIVQ 331 (554)
Q Consensus 259 ~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~nl~~----~~~~~~~~~~~ 331 (554)
+. .|.-|+..++.....|+.. +..++.+.+.|+++.+.+++...+ +--.-.+....+.+.. .+.. ...+.+
T Consensus 223 kGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvs-eeaice 300 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVS-EEAICE 300 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcC-HHHHHH
Confidence 74 7788899999998888764 444677788899999999987543 3223334444444421 1100 011111
Q ss_pred c--CCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCC--HHH-HHHHhcCCChhHHHHHHHHHHHcccCCc
Q 008781 332 R--GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG--LVP-LLKLLDSKNGSLQHNAAFALYGLADNED 406 (554)
Q Consensus 332 ~--~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~--l~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 406 (554)
. -++.-.++++...|+..++.|..+++.|.++.+....+...|- ... +.+..+.....-+..+..+|.+++..-.
T Consensus 301 aliiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelr 380 (524)
T KOG4413|consen 301 ALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELR 380 (524)
T ss_pred HHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcccc
Confidence 1 1233445666778999999999999999887777666655543 222 3344444444456777888888876433
Q ss_pred chhH-HHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHH
Q 008781 407 NVAD-FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF 485 (554)
Q Consensus 407 ~~~~-~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 485 (554)
.... +.+-...+.|- ..+.++..+ -.+-.-+...+..+..+.|+++..+.+++..++..+.+...+
T Consensus 381 lkpeqitDgkaeerlr----------clifdaaaq---stkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkei 447 (524)
T KOG4413|consen 381 LKPEQITDGKAEERLR----------CLIFDAAAQ---STKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEI 447 (524)
T ss_pred CChhhccccHHHHHHH----------HHHHHHHhh---ccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHH
Confidence 2222 22211111111 111111111 011123455666777889999999999999999999966544
Q ss_pred H-HcCcHHHH
Q 008781 486 I-DGGGLELL 494 (554)
Q Consensus 486 ~-~~~~l~~L 494 (554)
. +.+.+...
T Consensus 448 fakeefieiV 457 (524)
T KOG4413|consen 448 FAKEEFIEIV 457 (524)
T ss_pred hcCccceeee
Confidence 4 44444433
No 60
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=8.1e-08 Score=93.38 Aligned_cols=322 Identities=15% Similarity=0.120 Sum_probs=217.1
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (554)
.-.+.+++++..+.+.+. .++..||..++|++...... .......+...+.++..+++..++.. +..+-.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~--------~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdR 150 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDS--------QVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVRGG-AELLDR 150 (675)
T ss_pred HHHHhhHHHHHhccCccc--------eeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCccccccH-HHHHHH
Confidence 345678999999988877 89999999999998632211 11122334456666666777666543 333333
Q ss_pred hccCCc-cchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHH
Q 008781 234 LAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (554)
Q Consensus 234 l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~ 312 (554)
+..+-. +....+--.+++|.|-..+...++..|...+.-|..|-.. ++..-.-.-..+++.|+.+|.+++.+++.-+-
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTD 229 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHH
Confidence 332111 1111232234566666666677889999988888877433 33211112246888999999999999997777
Q ss_pred HHHHHHhc---CCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChh
Q 008781 313 LLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS 389 (554)
Q Consensus 313 ~~L~nl~~---~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 389 (554)
.+++++.. .++.. +-....++.++..+.++++.++..|+.-+..+..-.+......-.|.+..++.++.+....
T Consensus 230 t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~ 306 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM 306 (675)
T ss_pred HHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc
Confidence 66666542 12221 1224578889999999999999999999988887666655566677888888888776653
Q ss_pred -HHHHHHH---HHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHH
Q 008781 390 -LQHNAAF---ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQ 465 (554)
Q Consensus 390 -v~~~a~~---~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~ 465 (554)
++..+.. .+..+...+..... ++. +.++..+...+.++..+.|
T Consensus 307 ~i~~~a~~~n~~l~~l~s~~~~~~~-id~--------------------------------~~ii~vl~~~l~~~~~~tr 353 (675)
T KOG0212|consen 307 SIKEYAQMVNGLLLKLVSSERLKEE-IDY--------------------------------GSIIEVLTKYLSDDREETR 353 (675)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccc-cch--------------------------------HHHHHHHHHHhhcchHHHH
Confidence 4443333 23333333222111 111 2247788888899999999
Q ss_pred HHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCc
Q 008781 466 RRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 466 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
..++.-+..|-....++-........+.|..-+.+.+.+|...+...+.+++.+..+
T Consensus 354 i~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 999999999877777776677778889999999999999999999999999998655
No 61
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=8.7e-08 Score=99.31 Aligned_cols=244 Identities=18% Similarity=0.133 Sum_probs=193.4
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (554)
.|-++++|.+- ..+.+|+..|+.+.. ++.....-..-|+.|..+++|+++.. +++.--+
T Consensus 474 LPiVLQVLLSQ--------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~------------ELrpiLV 533 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ--------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR------------ELRPILV 533 (1387)
T ss_pred cchHHHHHHHH--------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH------------hhhhhHH
Confidence 45555555443 478899999999988 88888888899999999999999988 8998888
Q ss_pred HHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 008781 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (554)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll 216 (554)
.+-+++- .++.++..+++.++-.++++.|.....-. .+-+..|+.+|..++...+--++...+.+.+...+..+
T Consensus 534 FIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~-----~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l 608 (1387)
T KOG1517|consen 534 FIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIP-----PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL 608 (1387)
T ss_pred HHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCC-----HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh
Confidence 8888877 88999999999988888888887732211 17888999999999998777777777788888888999
Q ss_pred cCC-CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccC----hhhHHHH----
Q 008781 217 EFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS----PNIKKEV---- 287 (554)
Q Consensus 217 ~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----~~~~~~~---- 287 (554)
.++ .+-++...+-||+.|-.+.+..+-.-++.++.+.|+.+|.++-++||..|+.+|+.+..+. ++.....
T Consensus 609 nd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~ 688 (1387)
T KOG1517|consen 609 NDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEI 688 (1387)
T ss_pred cCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhh
Confidence 885 6889999999999999988888888788899999999999999999999999999997642 2211111
Q ss_pred --------HHcCCH---HHHHHHhccCChHHHHHHHHHHHHHhcCCcccHH
Q 008781 288 --------LAAGAL---QPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (554)
Q Consensus 288 --------~~~~~l---~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 327 (554)
++.-.. -.++.++++..+-++.+.+.+|..+..+......
T Consensus 689 ~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 689 DLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred cchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence 111111 2566667788888888888888888765544433
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=7e-06 Score=83.61 Aligned_cols=391 Identities=17% Similarity=0.188 Sum_probs=239.1
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~ 154 (554)
+.-++--|+-+|++++.- +.... ..|-+.++|+..++ -++..|+.|...+. ..|+.-..+
T Consensus 120 nq~vVglAL~alg~i~s~-Emard-----lapeVe~Ll~~~~~------------~irKKA~Lca~r~irK~P~l~e~f- 180 (866)
T KOG1062|consen 120 NQYVVGLALCALGNICSP-EMARD-----LAPEVERLLQHRDP------------YIRKKAALCAVRFIRKVPDLVEHF- 180 (866)
T ss_pred CeeehHHHHHHhhccCCH-HHhHH-----hhHHHHHHHhCCCH------------HHHHHHHHHHHHHHHcCchHHHHh-
Confidence 555777788888887763 33333 36777788888766 89999999999988 777664443
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC---------------C
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF---------------T 219 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~ 219 (554)
++...++|.+.+. .+....+..+..+|..+++.-..+.+ .++.|+..|+. +
T Consensus 181 ----~~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~ 246 (866)
T KOG1062|consen 181 ----VIAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGIS 246 (866)
T ss_pred ----hHHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCC
Confidence 4667777777665 77788899999999887776665554 66667666641 3
Q ss_pred CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC------CHHHHHHHHHHHHHHhccChhhHHHHHHcCCH
Q 008781 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (554)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (554)
+|-++...++.|+-+..++++..+.+.+ .|-++.+.. -..+..+++.++..|-.. ...+.. ++
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~-~~Lrvl-----ai 315 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSN-SGLRVL-----AI 315 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCC-chHHHH-----HH
Confidence 6789999999999999865555544442 333444321 246788888888877322 222222 56
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhc
Q 008781 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 373 (554)
Q Consensus 294 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~ 373 (554)
..|-++|.+.+..++.-|+..|..+...++.... ++ =..+++.|+++|..++..|+..+..|......+ .
T Consensus 316 niLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq---rH--r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~-~---- 385 (866)
T KOG1062|consen 316 NILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ---RH--RSTILECLKDPDVSIKRRALELSYALVNESNVR-V---- 385 (866)
T ss_pred HHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH---HH--HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH-H----
Confidence 6777888888888888888888887755554322 11 246788899999999999999999887543332 2
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHcccC-CcchhHHHhh--Ccc---ccccchhhhhhhhHHHHHHHHHHHHHHHhh
Q 008781 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRV--GGV---QKLQDGEFIVQATKDCVAKTLKRLEEKIHG 447 (554)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~--~~i---~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 447 (554)
.+..|+.+|...+.+.+..++.-+..++.. .+....+++. .++ -..++... +......+..+.....+....
T Consensus 386 -mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv-~~nll~LIa~~~~e~~~y~~~ 463 (866)
T KOG1062|consen 386 -MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDV-VNNLLRLIANAFQELHEYAVL 463 (866)
T ss_pred -HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhh-HHHHHHHHhcCCcchhhHHHH
Confidence 345678888888888888888877777653 2222222221 000 00000000 000000000000000000111
Q ss_pred chHHHHHH--HHhhCCHHHHHHHHHHHHhhc----CC--chhhHHHHHcCcHHHHHHhhC--CCChhHHHHHHHHHHHHH
Q 008781 448 RVLNHLLY--LMRVAEKGVQRRVALALAHLC----SP--DDQRTIFIDGGGLELLLGLLG--STNPKQQLDGAVALFKLA 517 (554)
Q Consensus 448 ~~l~~L~~--ll~~~~~~v~~~a~~~L~~l~----~~--~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~L~ 517 (554)
+.+..+.. ++..+.+.+..-+.|+|+... .+ .+....+-+..++..|..++. +.+..++..|..+|..|+
T Consensus 464 rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 464 RLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 11111111 122355666777888887653 11 111122334456777777776 355788889999999988
Q ss_pred hhcCc
Q 008781 518 NKATT 522 (554)
Q Consensus 518 ~~~~~ 522 (554)
....+
T Consensus 544 sr~~s 548 (866)
T KOG1062|consen 544 SRFHS 548 (866)
T ss_pred hhccc
Confidence 76543
No 63
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.84 E-value=4.4e-06 Score=81.71 Aligned_cols=400 Identities=14% Similarity=0.075 Sum_probs=239.8
Q ss_pred HHHHHhhhhccchHhhHHHHHHHHHHHHHhcc--ChhhHHHHHhC--C--------ChHHHHHhhcCCCCCccccCCCcc
Q 008781 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEG--G--------AVPALVKHLQAPPTSEADRNLKPF 128 (554)
Q Consensus 61 ~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~--g--------~v~~Lv~lL~~~~~~~~~~~~~~~ 128 (554)
+++.+|...+.........+..|.-+|.|-.. +++-...+.+. | +-...++-|.++.+
T Consensus 39 qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~ep---------- 108 (858)
T COG5215 39 QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEP---------- 108 (858)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCcc----------
Confidence 34444444333333344566677777777433 44433333221 1 12233455556555
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 008781 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (554)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (554)
.....|+.+++.++.- -+-.+.-|-++..+.+...+.. +...+..++.++++.|....+ ...+...+.
T Consensus 109 --r~~~~Aaql~aaIA~~------Elp~~~wp~lm~~mv~nvg~eq---p~~~k~~sl~~~gy~ces~~P-e~li~~sN~ 176 (858)
T COG5215 109 --RFCTMAAQLLAAIARM------ELPNSLWPGLMEEMVRNVGDEQ---PVSGKCESLGICGYHCESEAP-EDLIQMSNV 176 (858)
T ss_pred --HHHHHHHHHHHHHHHh------hCccccchHHHHHHHHhccccC---chHhHHHHHHHHHHHhhccCH-HHHHHHhhH
Confidence 7777888888888721 1223455555555544322211 128889999999999984443 333333332
Q ss_pred -hHHHHHh-hcC-CCHHHHHHHHHHHHHhccCCccchHHHHhcC----CHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh
Q 008781 209 -IPPLVEL-LEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECN----ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (554)
Q Consensus 209 -i~~L~~l-l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 281 (554)
+..++.- ++. ++..+|..++.+|.+-+.. .+..+...+ +++.....-..++.+++..+..||..+..-.-
T Consensus 177 il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 177 ILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 3333333 333 5668999999999984321 111222111 23445566668899999999999999977555
Q ss_pred hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHH----------------HHHcCCHHHHHHHhCC-
Q 008781 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH----------------IVQRGAVRPLIEMLQS- 344 (554)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~----------------~~~~~~~~~L~~~l~~- 344 (554)
..-+...+..+.......+.+.+.++...+....+.+|...-+.... -.-.+++|.|+++|..
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 55566666666677778889999999999998888887432211111 1123478899999863
Q ss_pred ------CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccc
Q 008781 345 ------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 418 (554)
Q Consensus 345 ------~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 418 (554)
+++.+...|..+|.-.++...+. +++ ..+..+-.-+.++++.-++.+..+++.+...+....
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd~--i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~--------- 401 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKGDK--IMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC--------- 401 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhhhH--hHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH---------
Confidence 24456667777776666533222 111 133334445677889999999999999876653211
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhh
Q 008781 419 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 498 (554)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll 498 (554)
+ ...-+..+|.+...+.++.--++..++|+++.++..-. ..+-..+-++..++..
T Consensus 402 ---------------l--------T~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va--~~i~p~~Hl~~~vsa~ 456 (858)
T COG5215 402 ---------------L--------TKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA--MIISPCGHLVLEVSAS 456 (858)
T ss_pred ---------------H--------HhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH--HhcCccccccHHHHHH
Confidence 1 11122347888888888888899999999999865421 1111112222222211
Q ss_pred ---CCCChhHHHHHHHHHHHHHhhcCc
Q 008781 499 ---GSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 499 ---~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
-.++|.+...+.|...|+..|-..
T Consensus 457 liGl~D~p~~~~ncsw~~~nlv~h~a~ 483 (858)
T COG5215 457 LIGLMDCPFRSINCSWRKENLVDHIAK 483 (858)
T ss_pred HhhhhccchHHhhhHHHHHhHHHhhhh
Confidence 146788888999999999987643
No 64
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.83 E-value=1.4e-05 Score=78.35 Aligned_cols=417 Identities=17% Similarity=0.110 Sum_probs=240.9
Q ss_pred hHhhHHHHHHHHHHHHHhccChhhHHHHHhCCC----hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CCh
Q 008781 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGA----VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP 147 (554)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~----v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~ 147 (554)
.+.+..++..|+.+|.+-+. ..+..+-..+- +...++.-+.++. +++..+..+|.++- -..
T Consensus 188 ~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~------------e~q~aafgCl~kim~LyY 253 (858)
T COG5215 188 NETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDE------------ELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred cCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcH------------HHHHHHHHHHHHHHHHHH
Confidence 34466688888888877321 11112222222 3333344444443 99999999999988 444
Q ss_pred hhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHH----------------HhcCChHH
Q 008781 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV----------------RMEGGIPP 211 (554)
Q Consensus 148 ~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~----------------~~~~~i~~ 211 (554)
.+-....+.-.-....+.+++.++ ++...+......+|.+.-+..-.. ...+++|.
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd--------~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~ 325 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQND--------EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE 325 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcch--------HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence 444444444444555566777766 888889988888886332211111 12347899
Q ss_pred HHHhhcC-------CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhH
Q 008781 212 LVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (554)
Q Consensus 212 L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (554)
|+.+|.. ++..+...|..||.-.+.. ..+.+++. ++..+-.-+++++..-|..++.+++.+..+.....
T Consensus 326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~ 401 (858)
T COG5215 326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC 401 (858)
T ss_pred HHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH
Confidence 9999865 2346777788887776642 11223322 33333345667888889999999999987654444
Q ss_pred HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHH-HcCCHHHHHHH-hC--CCCHHHHHHHHHHHHHH
Q 008781 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEM-LQ--SPDVQLREMSAFALGRL 360 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~~~~L~~~-l~--~~~~~v~~~a~~~L~~L 360 (554)
..-+-..+++.+...+.++.--++..++||++.++..- ...+ ..|-++..++. +. .+.+.+..+++|..-|+
T Consensus 402 lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nl 477 (858)
T COG5215 402 LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENL 477 (858)
T ss_pred HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhH
Confidence 44444678899999999888889999999999997432 2222 23333333322 22 24677888999999999
Q ss_pred hcCCCcch---hhhhcCCHHHHHHHh------cCCChhHHHHHHHHHHHcccC-CcchhHHHhhCcccccc---chhhhh
Q 008781 361 AQDMHNQA---GIAHNGGLVPLLKLL------DSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQ---DGEFIV 427 (554)
Q Consensus 361 ~~~~~~~~---~l~~~~~l~~L~~ll------~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~i~~L~---~~~~~~ 427 (554)
+.+-.... .-.-..+.+.+++-| ...+...|..+..+|..+... ++....+.. |...... +...+.
T Consensus 478 v~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~kl~~~isv 556 (858)
T COG5215 478 VDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKKLDECISV 556 (858)
T ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHHHHHHHH
Confidence 86532211 111122333333322 123345566666677666433 222222211 1100000 000000
Q ss_pred h----h------hHHHHHHHHHHHHHH----------HhhchHHHHHHHHhhC-CHHHHHHHHHHHHhhcCCchhhHHHH
Q 008781 428 Q----A------TKDCVAKTLKRLEEK----------IHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFI 486 (554)
Q Consensus 428 ~----~------~~~~~~~~~~~l~~~----------~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 486 (554)
+ . ..+.....+.-++.+ ....++..++.+|.+. ...+...+..++++|+..-+.+....
T Consensus 557 ~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y 636 (858)
T COG5215 557 LGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQY 636 (858)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 011111111111111 2334777888888776 44556678889999987766555556
Q ss_pred HcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 487 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 487 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
-...+|-|.+-+...+..+...|...+..|++.-
T Consensus 637 ~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 637 ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 6677888888888778888888888888887753
No 65
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.5e-06 Score=76.89 Aligned_cols=309 Identities=15% Similarity=0.155 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccc----hHHHHhcCCHHHHH
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVECNALPTLI 255 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~L~ 255 (554)
+-...+..+|-.|....+... ......+.|-.-|..++..++..+|..+..+..+.+.| ...+++.++.+.++
T Consensus 58 ekttlcVscLERLfkakegah---lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklil 134 (524)
T KOG4413|consen 58 EKTTLCVSCLERLFKAKEGAH---LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL 134 (524)
T ss_pred chhhhHHHHHHHHHhhccchh---hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH
Confidence 333457777777765443322 12345566666677888899999999998888765533 22345789999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHH--HHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcC
Q 008781 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV--IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (554)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L--~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 333 (554)
..+..++.+|...|...+..++.. +..-..+.....++.+ ..+-..++.-++......+-.+.+-++......-..|
T Consensus 135 dcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSG 213 (524)
T KOG4413|consen 135 DCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSG 213 (524)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhh
Confidence 999999999999999999999865 4444666666665543 3344456666788888888888888888777888899
Q ss_pred CHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCC--ChhHHHHHHHHHHHcccCCcchhH
Q 008781 334 AVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVAD 410 (554)
Q Consensus 334 ~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 410 (554)
++..|..-++. .|.-++.+++.....|+...+.+..+.+.|.|+.+.+++.-. +|--...+......+..+..-. .
T Consensus 214 LldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaim-d 292 (524)
T KOG4413|consen 214 LLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIM-D 292 (524)
T ss_pred HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHh-h
Confidence 99999888885 677889999999999999888899999999999999988543 3433444455444444332110 0
Q ss_pred HHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCc
Q 008781 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG 490 (554)
Q Consensus 411 ~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 490 (554)
+.+ +.+.+... -.+...++++...+|..+..|.-+++.+-++.+....+.+.|-
T Consensus 293 vse------------------eaiceali--------iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp 346 (524)
T KOG4413|consen 293 VSE------------------EAICEALI--------IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP 346 (524)
T ss_pred cCH------------------HHHHHHHH--------HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC
Confidence 000 00000000 0244456777889999999999999999888888877766654
Q ss_pred --HHHHHHhhCCCCh-hHHHHHHHHHHHHHhh
Q 008781 491 --LELLLGLLGSTNP-KQQLDGAVALFKLANK 519 (554)
Q Consensus 491 --l~~L~~ll~~~~~-~v~~~a~~~L~~L~~~ 519 (554)
...++.-..+.+. .-+..+..+|.+++..
T Consensus 347 paaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 347 PAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 2333333333333 4567788888888753
No 66
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.73 E-value=8.2e-06 Score=84.38 Aligned_cols=422 Identities=18% Similarity=0.159 Sum_probs=234.7
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccCh-hhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (554)
+..+...-.+.+..++.|.+++..|+.++..+..+- +.-.. --..+++.|++-|... -.|..|.
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~-eL~~~L~il~eRl~nE--------------iTRl~Av 630 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGN-ELPRTLPILLERLGNE--------------ITRLTAV 630 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHhch--------------hHHHHHH
Confidence 333333333334445568889999998888776531 11110 0123566666666543 5577899
Q ss_pred HHHHHhcCChh-hHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 008781 138 FALGLLAVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (554)
Q Consensus 138 ~~L~~l~~~~~-~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll 216 (554)
+++..++.++- ....-.-..+++.+..+++.... .++...+.++..|.......-..-.....+..+..++
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li 702 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI 702 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh
Confidence 99999995543 22223334568888899988765 6666777777666642221111111122334455566
Q ss_pred cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH----hccChhhHHHHHHcCC
Q 008781 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL----VHSSPNIKKEVLAAGA 292 (554)
Q Consensus 217 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L----~~~~~~~~~~~~~~~~ 292 (554)
...+-.+...|..+|..+....+. .-.-+...+++.++.+++++- ++-.++.++.++ ........ +
T Consensus 703 sesdlhvt~~a~~~L~tl~~~~ps-~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l------~- 772 (1233)
T KOG1824|consen 703 SESDLHVTQLAVAFLTTLAIIQPS-SLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDL------D- 772 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccH-HHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCc------c-
Confidence 667778889999999998874333 333445568899999998753 233333333322 21111110 1
Q ss_pred HHHHHHHhccCCh-----HHHHHH----HHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC--CCCHHHHHHHHHHHHHHh
Q 008781 293 LQPVIGLLSSCCS-----ESQREA----ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLA 361 (554)
Q Consensus 293 l~~L~~lL~~~~~-----~~~~~a----~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~L~ 361 (554)
...++.++..+-. .+.+.| +.|...++...++.- ......++.-++ ..+..++.-|.-.|+.+.
T Consensus 773 y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s-----~s~a~kl~~~~~s~~s~~~ikvfa~LslGElg 847 (1233)
T KOG1824|consen 773 YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKS-----KSLATKLIQDLQSPKSSDSIKVFALLSLGELG 847 (1233)
T ss_pred HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhc
Confidence 3445555554321 233333 334444432222111 112233333333 235567777788888776
Q ss_pred cCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC--CcchhHHHhhCc-------------cccccc----
Q 008781 362 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGG-------------VQKLQD---- 422 (554)
Q Consensus 362 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~-------------i~~L~~---- 422 (554)
++.+. ....+.-..++..+++++.+++.+|..+|++++.+ +.....+.+.-. -+.+..
T Consensus 848 r~~~~---s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd 924 (1233)
T KOG1824|consen 848 RRKDL---SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVD 924 (1233)
T ss_pred cCCCC---CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccc
Confidence 54322 12233444688899999999999999999999763 222222222100 000000
Q ss_pred -----------hhhh-----hhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 008781 423 -----------GEFI-----VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486 (554)
Q Consensus 423 -----------~~~~-----~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 486 (554)
..|. ...++..+++.+.++.-+-....+|.|-..++++.+..+..++-++..........--..
T Consensus 925 ~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~ 1004 (1233)
T KOG1824|consen 925 GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPL 1004 (1233)
T ss_pred hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHH
Confidence 0000 011222233333333333355567777777788888877777777666644433222222
Q ss_pred HcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 487 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 487 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
...-+..+..++.+++.+||+.|..++...+++.+
T Consensus 1005 lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1005 LKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH
Confidence 33347788899999999999999999988887654
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.9e-05 Score=79.25 Aligned_cols=296 Identities=18% Similarity=0.182 Sum_probs=169.0
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (554)
.+-.+.+.++++-..+.. -++..|+.+|+++|. ++. .....|-+.+++++.++.+++.|+.|...+...
T Consensus 104 vllLltNslknDL~s~nq----~vVglAL~alg~i~s--~Em-----ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQ----YVVGLALCALGNICS--PEM-----ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK 172 (866)
T ss_pred HHHHHHHHHHhhccCCCe----eehHHHHHHhhccCC--HHH-----hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 344555666554332222 677889999999986 221 234678899999999999999999999999876
Q ss_pred CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc----C----------
Q 008781 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----C---------- 303 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~----~---------- 303 (554)
.|+..+. +++...++|.+.+..|....+..+..++..+++....+.+ .++.++..|++ .
T Consensus 173 ~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi 245 (866)
T KOG1062|consen 173 VPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGI 245 (866)
T ss_pred CchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCC
Confidence 6654433 4567778888888888888888888888776665444443 44444444432 1
Q ss_pred -ChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHH
Q 008781 304 -CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL 382 (554)
Q Consensus 304 -~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~l 382 (554)
+|=++...+ .++.+|..++++..+.....|..++++.+.-+-....-..+.+..+
T Consensus 246 ~dPFLQi~iL------------------------rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI 301 (866)
T KOG1062|consen 246 SDPFLQIRIL------------------------RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI 301 (866)
T ss_pred CchHHHHHHH------------------------HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 111222222 2344455556666666666666666544332211111111222222
Q ss_pred hc-CCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCC
Q 008781 383 LD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE 461 (554)
Q Consensus 383 l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~ 461 (554)
+. ..+..++..|+.+|+.+..+.++--+.+.-+.+-.++.... +.. .+=-..++.+++++|
T Consensus 302 ~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~--~av----------------qrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 302 MDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDP--TAV----------------QRHRSTILECLKDPD 363 (866)
T ss_pred HhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCc--HHH----------------HHHHHHHHHHhcCCc
Confidence 21 13455666666666666554433222222111111111000 000 000234566777777
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 462 KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 462 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
..+++.|...+..|......+.. +..|+.++.+.+++.+...+.-+..+++.
T Consensus 364 ~SIkrralELs~~lvn~~Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNESNVRVM------VKELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred HHHHHHHHHHHHHHhccccHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 77777777777777666555543 45667777766777777777777666653
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=6e-06 Score=83.00 Aligned_cols=288 Identities=14% Similarity=0.132 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHH
Q 008781 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i 153 (554)
|+.++-.|+.+++.|++ +|.+.-.+ -|.+-.+|.+.+.+ -+....+.++++|+ -.|....
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNN-----------WmLIKiiKLF~aLtplEPRLgK-- 255 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNN-----------WVLIKLLKLFAALTPLEPRLGK-- 255 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCC-----------eehHHHHHHHhhccccCchhhh--
Confidence 55556666666666665 55443332 35555555443321 33445555566665 4444332
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHH--HHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT--NLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~--~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (554)
..+++|.+++.+.... .+...|+.++. ++..+.+.....+ .-++..|-.++.++|+.++.-++-++
T Consensus 256 ---KLieplt~li~sT~Am-------SLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam 323 (877)
T KOG1059|consen 256 ---KLIEPITELMESTVAM-------SLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAM 323 (877)
T ss_pred ---hhhhHHHHHHHhhHHH-------HHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHH
Confidence 3356777777665443 44444444432 3333322222111 22566777788899999999999999
Q ss_pred HHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCCh-HHHHH
Q 008781 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQRE 310 (554)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~~~~ 310 (554)
+.+...++...... -+.+++.|.+.|+.+|..|+..|..+.. ..+... ++..|+..+...++ ..+.+
T Consensus 324 ~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrde 391 (877)
T KOG1059|consen 324 SKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDE 391 (877)
T ss_pred HHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHH
Confidence 99986555443322 4677899999999999999999999864 333233 34455555544333 45555
Q ss_pred HHHHHHHHhcCCcccHHHHHHcC-CHHHHHHHhCCCCHHHHHHHHHHHHHHhc-CCCcchhhhhcCCHHHHHHHh-----
Q 008781 311 AALLLGQFAATDSDCKVHIVQRG-AVRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLL----- 383 (554)
Q Consensus 311 a~~~L~nl~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~v~~~a~~~L~~L~~-~~~~~~~l~~~~~l~~L~~ll----- 383 (554)
.+.-+-.+|+.+ +-..+.+.. .+..++++.+-+..+.-.-...-+.+++- -+..|.. .+..+..++
T Consensus 392 ll~~II~iCS~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~f-----sV~~m~~Ll~~~~~ 464 (877)
T KOG1059|consen 392 LLTRIISICSQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPF-----SVSQMSALLDDPLL 464 (877)
T ss_pred HHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHh-----HHHHHHHHHhchhh
Confidence 555555555432 222232222 23344444432211111111222333322 1111211 111112222
Q ss_pred ------cCCChhHHHHHHHHHHHcccCCcchhHHH
Q 008781 384 ------DSKNGSLQHNAAFALYGLADNEDNVADFI 412 (554)
Q Consensus 384 ------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 412 (554)
++.-.+|..+|+|+++..+...++....+
T Consensus 465 ~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~l 499 (877)
T KOG1059|consen 465 AGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTL 499 (877)
T ss_pred ccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 12236788999999999887666544333
No 69
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.69 E-value=5.7e-06 Score=83.30 Aligned_cols=366 Identities=13% Similarity=0.085 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 008781 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (554)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (554)
.||..++.+|+.++ ..|--...+- .++..|-+-.+.+.. .....-+.+++.+|....+..........
T Consensus 568 kVR~itAlalsalaeaa~Pygie~fD--sVlkpLwkgir~hrg--------k~laafLkAigyliplmd~eya~yyTrev 637 (1172)
T KOG0213|consen 568 KVRTITALALSALAEAATPYGIEQFD--SVLKPLWKGIRQHRG--------KELAAFLKAIGYLIPLMDAEYASYYTREV 637 (1172)
T ss_pred hhhhHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHHHHccC--------hHHHHHHHHHhhccccccHHHHHHhHHHH
Confidence 78888888888887 3332111110 123333333344443 55556677788887655544444444555
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
+-.+++-..++|++.+.-.+..+..+|. .+......+...+++.+....-......-..--+-+... .....+.+.
T Consensus 638 mlil~rEf~sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~t---tv~ia~KvG 713 (1172)
T KOG0213|consen 638 MLILIREFGSPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDT---TVEIAAKVG 713 (1172)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHH---HHHHHHHhC
Confidence 6667777788999999999999999997 444555566667788777654321110000000111111 111122222
Q ss_pred HcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCC--cccHHHHHHcCCHHHHHHHhCCC--CHHHHHHHHHHHHHHhcCC
Q 008781 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATD--SDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~--~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~L~~~~ 364 (554)
....+..++.=+.+..+..++..+.++.++...- .+.-.. .+..++..++-.++.. +..+.-.+..++.|-.
T Consensus 714 ~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider-leE~lidgil~Afqeqtt~d~vml~gfg~V~~~l--- 789 (1172)
T KOG0213|consen 714 SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER-LEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL--- 789 (1172)
T ss_pred chHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH---
Confidence 2234455555566666666766666555543211 111111 1223445555555532 2234444444444422
Q ss_pred CcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhH--HHhh-Cccccccch-hhhhhhhHHHHHHHHHH
Q 008781 365 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD--FIRV-GGVQKLQDG-EFIVQATKDCVAKTLKR 440 (554)
Q Consensus 365 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~-~~i~~L~~~-~~~~~~~~~~~~~~~~~ 440 (554)
..|.+-.-..++..++..|+++++.++..|+..+..++.--.+..+ ++.+ |.+ |.+- .-..+.+-.-+..+++.
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHH
Confidence 1121112223455677788999999999999999988754333322 2222 221 1110 01123333445555555
Q ss_pred HHHHH--------hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC-ch---hhHHHHHcCcHHHHHHhhCCCChhHHHH
Q 008781 441 LEEKI--------HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DD---QRTIFIDGGGLELLLGLLGSTNPKQQLD 508 (554)
Q Consensus 441 l~~~~--------~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~---~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 508 (554)
+-..+ -++++|+|.++|+..+..|+.+.+..++.+|.. ++ .+.-+. .---|+++|.+-+.++|+.
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRa 944 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRA 944 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 54432 567899999999999999999999999999754 33 222111 1135667777788889998
Q ss_pred HHHHHHHHHhh
Q 008781 509 GAVALFKLANK 519 (554)
Q Consensus 509 a~~~L~~L~~~ 519 (554)
|...+..+++-
T Consensus 945 a~nTfG~Iaka 955 (1172)
T KOG0213|consen 945 AVNTFGYIAKA 955 (1172)
T ss_pred HHhhhhHHHHh
Confidence 88888888764
No 70
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.8e-05 Score=79.01 Aligned_cols=346 Identities=16% Similarity=0.126 Sum_probs=214.5
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (554)
++..|+.-+..+.. .+++....+|..+....+.. ....+.+.+.+++..... .-+..
T Consensus 97 ~~~~~~~~~~tps~------------~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~--------~~~~~ 153 (569)
T KOG1242|consen 97 IIEILLEELDTPSK------------SVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKI--------AERAG 153 (569)
T ss_pred HHHHHHHhcCCCcH------------HHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccH--------HHHhh
Confidence 46677777777766 88888888887766111111 011235667777775444 67777
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHH-HHHHHHHhccC-CccchHHHHhcCCHHHHHHhhcCCC
Q 008781 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA-AAGALRTLAFK-NDENKNQIVECNALPTLILMLRSED 262 (554)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (554)
+.+.+..+..+.. ...+.+.+++..+...+.+.....+.. ++-+.-..+.. .+.....++ ..++.++.-+.+..
T Consensus 154 aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~~d~~ 229 (569)
T KOG1242|consen 154 AAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNFGDKI 229 (569)
T ss_pred hhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHhhccc
Confidence 8888888876333 334567788889988888765544432 22222222211 111111122 23555555566778
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l 342 (554)
+.||..+..+...+...-+...-. -+++.++.-+....|..+..++..++.++... ..+....-..++|.+.+.|
T Consensus 230 ~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 230 NKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHH
Confidence 899999998888775543322111 13444554444447889999999999887443 3344456678999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccc
Q 008781 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (554)
Q Consensus 343 ~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 422 (554)
.+..+++|+.+..+|.+++.-.+|.. -...++.|++.+.+++..+.. +...|..=. .+..+..
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~d---I~~~ip~Lld~l~dp~~~~~e-~~~~L~~tt-------------FV~~V~~ 367 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPD---IQKIIPTLLDALADPSCYTPE-CLDSLGATT-------------FVAEVDA 367 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHhcCcccchHH-HHHhhccee-------------eeeeecc
Confidence 99999999999999999987655543 123577788888776633332 222222110 0000000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHH--HHHcCcHHHHHHhhCC
Q 008781 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI--FIDGGGLELLLGLLGS 500 (554)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~L~~ll~~ 500 (554)
.+ -.-++|.|-.-+...+..+++.++.++.|+|.--+.... -.-...+|.|-..+.+
T Consensus 368 ------ps---------------LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d 426 (569)
T KOG1242|consen 368 ------PS---------------LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD 426 (569)
T ss_pred ------hh---------------HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC
Confidence 00 000245555566678889999999999999764321111 1112346777777778
Q ss_pred CChhHHHHHHHHHHHHHhhc
Q 008781 501 TNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 501 ~~~~v~~~a~~~L~~L~~~~ 520 (554)
..|++|..++++|..+.+..
T Consensus 427 ~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 427 AVPEVRAVAARALGALLERL 446 (569)
T ss_pred CChhHHHHHHHHHHHHHHHH
Confidence 89999999999998887754
No 71
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=6.7e-06 Score=74.62 Aligned_cols=242 Identities=18% Similarity=0.177 Sum_probs=159.9
Q ss_pred hHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 008781 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (554)
+-.++.++.+.++ .++..|...+.++... ..+..... ...++.+.++++..++ ...|+.+|.|++.
T Consensus 5 l~elv~ll~~~sP--------~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq- 71 (353)
T KOG2973|consen 5 LVELVELLHSLSP--------PVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ- 71 (353)
T ss_pred HHHHHHHhccCCh--------HHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-
Confidence 3457788888777 8999999999998874 33333222 3456778888887766 6788999999998
Q ss_pred CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHH------cCCHHHHHHHhccCCh--HHHH
Q 008781 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCS--ESQR 309 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~--~~~~ 309 (554)
+...++.++.. ++..++..+.++....-..++..|.|++............ .|.+.......+.+.. .-..
T Consensus 72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ 150 (353)
T KOG2973|consen 72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFH 150 (353)
T ss_pred hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchh
Confidence 66677777665 7888888888887778888999999998875544333321 3445555555544322 3345
Q ss_pred HHHHHHHHHhcCCcccHHHHHHcCCHH--HHHHHhCCCCHHHHH-HHHHHHHHHhcCCCcchhhhhc--CCHHHHH-HHh
Q 008781 310 EAALLLGQFAATDSDCKVHIVQRGAVR--PLIEMLQSPDVQLRE-MSAFALGRLAQDMHNQAGIAHN--GGLVPLL-KLL 383 (554)
Q Consensus 310 ~a~~~L~nl~~~~~~~~~~~~~~~~~~--~L~~~l~~~~~~v~~-~a~~~L~~L~~~~~~~~~l~~~--~~l~~L~-~ll 383 (554)
..+.++.|++. .+..+..+.+...++ .+.. +.+.+..+|. ..+++|.|+|.+...+..+... ..++.++ .+.
T Consensus 151 ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPla 228 (353)
T KOG2973|consen 151 YLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLA 228 (353)
T ss_pred HHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcC
Confidence 67778899974 355666666554322 2322 2345666655 6788999999888777766552 2233322 222
Q ss_pred -------------------------cCCChhHHHHHHHHHHHcccCCcchhHHHhhCc
Q 008781 384 -------------------------DSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (554)
Q Consensus 384 -------------------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 416 (554)
..+++.++..-+.+|..|+.....+..+.+.|+
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgv 286 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGV 286 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCc
Confidence 123566777777888888777777766666553
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.1e-05 Score=81.06 Aligned_cols=223 Identities=22% Similarity=0.265 Sum_probs=165.6
Q ss_pred HHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCc
Q 008781 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (554)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 239 (554)
+-++.+|.+..+ -++..|+.+++.++...|+.- ..++|.|.+-|.++|+.++.+|...++.|+..+|
T Consensus 147 ~Dv~tLL~sskp--------YvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnP 213 (877)
T KOG1059|consen 147 DDVFTLLNSSKP--------YVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNP 213 (877)
T ss_pred HHHHHHHhcCch--------HHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCC
Confidence 567888888777 999999999999998777642 3578999999999999999999999999999888
Q ss_pred cchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCC-hHHHHHHHHHH--
Q 008781 240 ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLL-- 315 (554)
Q Consensus 240 ~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~~~~a~~~L-- 315 (554)
.+.-. +-|.+.++|. +++.-+....+..+++|+--.|...+ .+++++..++.+.. ..+..++..++
T Consensus 214 knyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 214 QNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred ccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 77433 3578888887 55777888999999999876665544 36788899887654 34444554433
Q ss_pred HHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHH
Q 008781 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (554)
Q Consensus 316 ~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (554)
++++++.+++-..+ .=+++.|-.++.+.|+.++.-++.+++.++..... .+ ...-+.++++|.+.++.++..|+
T Consensus 284 ~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---~V-qa~kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 284 VSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---AV-QAHKDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred ehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---HH-HHhHHHHHHHhccCCchhHHHHH
Confidence 24555544443322 12567777788899999999999999999864322 11 12346688999999999999999
Q ss_pred HHHHHcccCCcchhHHH
Q 008781 396 FALYGLADNEDNVADFI 412 (554)
Q Consensus 396 ~~L~~l~~~~~~~~~~~ 412 (554)
..|..+... +|...++
T Consensus 358 dLl~gmVsk-kNl~eIV 373 (877)
T KOG1059|consen 358 DLLYGMVSK-KNLMEIV 373 (877)
T ss_pred HHHHHHhhh-hhHHHHH
Confidence 999998754 3444433
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=98.65 E-value=0.00011 Score=75.93 Aligned_cols=242 Identities=16% Similarity=0.147 Sum_probs=167.4
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChh---hHHHHHHcCChHHHHHHHhccccCccccchhHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE---HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~---~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (554)
+..-+++|+..+. +=|-.++-.+.+++ .++. .++.+.+.=+.+.+-++|+....+... +....
T Consensus 7 l~~c~~lL~~~~D------------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~ 73 (543)
T PF05536_consen 7 LEKCLSLLKSADD------------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEY 73 (543)
T ss_pred HHHHHHHhccCCc------------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHH
Confidence 5566678877764 66778888889998 4332 344577776688899999885543222 22388
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC
Q 008781 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (554)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (554)
+..++.+|..+|. .|+....-...+-||.|++.+.+.+. .+...++.+|..++. .++++..+++.|.++.|...+.+
T Consensus 74 ~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 74 LSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh
Confidence 8999999999998 66554444445689999999987766 899999999999995 89999999999999999999877
Q ss_pred CCHHHHHHHHHHHHHHhccChhhH---HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCccc-HHHHHH----c
Q 008781 261 EDSAIHYEAVGVIGNLVHSSPNIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQ----R 332 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-~~~~~~----~ 332 (554)
.+.....++.++.+++....... ..-.-..+++.+...+.......+...+..|.++-...+.. ...... .
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 56678889999988876433110 00001134555666666666677778888888887554211 111122 2
Q ss_pred CCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcC
Q 008781 333 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 333 ~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~ 363 (554)
.+...+..++++ ..+.-|..++.....|...
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 334445555665 4667777777777777643
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.8e-06 Score=84.30 Aligned_cols=353 Identities=15% Similarity=0.135 Sum_probs=220.2
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
.++++..+..+...+. .++.-|+..+.|++.-...........+...+.++..+.+. -.
T Consensus 83 ~~iv~Pv~~cf~D~d~------------~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~---------~V 141 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS------------QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ---------NV 141 (675)
T ss_pred HHhhHHHHHhccCccc------------eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc---------cc
Confidence 5678888888888777 89999999999998221111122222334455555554433 23
Q ss_pred HHHHHHHHHHhhcCchhHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHH-HhcCCHHHHHHhhcC
Q 008781 183 RRAADAITNLAHENSSIKT-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILMLRS 260 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~ll~~ 260 (554)
+.++..+-.+..+-..-+. .|.-.+.+|.|-+-+...++..|.....-|..+-. .|. .+.+ .-..+++-|..+|.+
T Consensus 142 ~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~-~~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 142 RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPD-LEMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCc-HHHHhcchHHHHHHHHHhcC
Confidence 3445555555432221111 34445566666666667789999988888888765 333 2222 234678888999999
Q ss_pred CCHHHHHHHHHHHHHHhc---cChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHH
Q 008781 261 EDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~ 337 (554)
+.++||..+=.+++++.. ++|.. +--...++.++.-+.++++.++..|...+..+..-.+.. ....-.|++..
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~ 295 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTA 295 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhh
Confidence 999999877776666532 12211 112357788888899999999999988777776433322 23345677777
Q ss_pred HHHHhCCCCHH-HHHHHHH---HHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHh
Q 008781 338 LIEMLQSPDVQ-LREMSAF---ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 413 (554)
Q Consensus 338 L~~~l~~~~~~-v~~~a~~---~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 413 (554)
++..+.+.+.. +++.+.. .|..+.........+--...+..+.+.+.++..+.+-.++.-+..+-...++.- ..
T Consensus 296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql--~~ 373 (675)
T KOG0212|consen 296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL--LV 373 (675)
T ss_pred cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh--hh
Confidence 77777765543 4443322 233333332222222222356778888888888999888887777765544411 11
Q ss_pred hCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHH
Q 008781 414 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 493 (554)
Q Consensus 414 ~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 493 (554)
....++..|+..+.+++.++...++..+.++|.+++.... ...+..
T Consensus 374 -------------------------------h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~s 419 (675)
T KOG0212|consen 374 -------------------------------HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLS 419 (675)
T ss_pred -------------------------------hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHH
Confidence 2334577888888889999999999999999988775411 112344
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 494 LLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 494 L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
|.++...+..-+..++...+.+|+.
T Consensus 420 LL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 420 LLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 5555555555666677777766664
No 75
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.63 E-value=6.5e-05 Score=73.47 Aligned_cols=315 Identities=14% Similarity=0.114 Sum_probs=204.8
Q ss_pred CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--CCHH
Q 008781 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTK 222 (554)
Q Consensus 145 ~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~ 222 (554)
..|+.+..+.-....+.+..++-+++. +++..+..++..+.. ++..-..+...+.-..++.-+.. .+..
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~--------~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSK--------EVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 455555554444455666654444444 999999999999988 55555566666665666666644 3456
Q ss_pred HHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc
Q 008781 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (554)
Q Consensus 223 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~ 302 (554)
-+.+|++.++.+..-. .+.+ .+..|++..++.+..+.++..+..|+.+|+.++-.+| +.+...|++..+...+.+
T Consensus 84 ER~QALkliR~~l~~~-~~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLEIK-KGPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHhc-CCcc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh
Confidence 7889999999988632 2222 2355788999999999999999999999999988777 457789999999999988
Q ss_pred CChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCC-------CH--HHHHHHHHHHHHHhcCCCcchhhhhc
Q 008781 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-------DV--QLREMSAFALGRLAQDMHNQAGIAHN 373 (554)
Q Consensus 303 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~-------~~--~v~~~a~~~L~~L~~~~~~~~~l~~~ 373 (554)
+..++....+.++..+. ..+..+..+...--+..++.-+.+. +. .....+..++..+.+.-.+--.+...
T Consensus 159 ~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 76678888888888886 5566666555433344444443322 22 34456666777776655544333332
Q ss_pred --CCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc--hhHH------HhhCcc---ccccchhhh-------hhh-hHH
Q 008781 374 --GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN--VADF------IRVGGV---QKLQDGEFI-------VQA-TKD 432 (554)
Q Consensus 374 --~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~------~~~~~i---~~L~~~~~~-------~~~-~~~ 432 (554)
.++..|+..|..++++++......+..+.+-... ...+ ...+-. ..+.+ .|. ... ...
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~-~~~e~~~~~~~~~~~~~ 316 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSS-GFAEAKSILPHRSSKRP 316 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcc-cccccccccCccccccc
Confidence 5799999999999999999999999988653211 1111 111111 00100 000 000 000
Q ss_pred HHHHHHH--HHHHHHhhchHHHHHHHHhhC-CHHHHHHHHHHHHhh
Q 008781 433 CVAKTLK--RLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHL 475 (554)
Q Consensus 433 ~~~~~~~--~l~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l 475 (554)
-+.+.-. -+.-.++.|+++.|+.+..+. ++.+...|...|+.+
T Consensus 317 ~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 317 NLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred cHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 0111111 112246899999999999886 888999998888876
No 76
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=1.1e-06 Score=91.35 Aligned_cols=227 Identities=14% Similarity=0.144 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 008781 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (554)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~ 211 (554)
|..|+..|+.+- .++-....-..-|+.|+++++|+++.. +++...+.+-..+..-++..+..+...++-..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~Y 558 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILVFIWAKILAVDPSCQADLVKENGYKY 558 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHHHHHHHHHhcCchhHHHHHhccCcee
Confidence 456888888888 777777788888999999999999877 88888888888887778888888888888888
Q ss_pred HHHhhcC-C--CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 212 LVELLEF-T--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 212 L~~ll~~-~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
+++.+.. + +++-+..|+.+|..++.+....++...+.+++...+..|.++ .+-.|.+++-||+.|..+.+..+-.-
T Consensus 559 F~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G 638 (1387)
T KOG1517|consen 559 FLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSG 638 (1387)
T ss_pred EEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcc
Confidence 8888866 2 457888999999999988788888899999999999999885 68899999999999998888877777
Q ss_pred HHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCC----cccHHHH------------HHcCCH---HHHHHHhCCCCHH
Q 008781 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD----SDCKVHI------------VQRGAV---RPLIEMLQSPDVQ 348 (554)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~----~~~~~~~------------~~~~~~---~~L~~~l~~~~~~ 348 (554)
...++...|+.+|.++-++|+-.|+.+|+.+.... ++....+ .+.-+. ..++..++++.+-
T Consensus 639 ~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgspl 718 (1387)
T KOG1517|consen 639 RRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPL 718 (1387)
T ss_pred ccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchH
Confidence 77889999999999999999999999999987642 1111111 122222 2566677788999
Q ss_pred HHHHHHHHHHHHhcCCCcc
Q 008781 349 LREMSAFALGRLAQDMHNQ 367 (554)
Q Consensus 349 v~~~a~~~L~~L~~~~~~~ 367 (554)
++.+..-+|..+..+....
T Consensus 719 vr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 719 VRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 9999999999988655443
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.61 E-value=2.2e-05 Score=79.19 Aligned_cols=260 Identities=15% Similarity=0.092 Sum_probs=162.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhH--HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHH
Q 008781 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK--KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (554)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 328 (554)
+..++..|++..+.+|..|+..++.++.--..+. +.+...| -.|...|....+++.-..+.++..+...-.-.+..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 3345566777888899999988888864222111 2222222 24666777777888776666665554321100010
Q ss_pred HHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc---hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC
Q 008781 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (554)
Q Consensus 329 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~---~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (554)
-=-.+++|.|..+|++....+++++...++.++...... +.+.. +---|+++|.+.+.+++.+|..+++.++..-
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 112578999999999999999999999999999654332 22222 3445888888889999999999999997643
Q ss_pred cchhHHHhhCccccccchhh-hhhhhHHHHHHHHHHHHHH-HhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chh
Q 008781 406 DNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQ 481 (554)
Q Consensus 406 ~~~~~~~~~~~i~~L~~~~~-~~~~~~~~~~~~~~~l~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~ 481 (554)
..... +..|++... +....+.|-.-++.-..+. ..-.++|.|+.=-+.++..||.-++++++.+-.. +-.
T Consensus 957 GPqdV------LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen 957 GPQDV------LATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred CHHHH------HHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence 32222 222332221 1112223322222211111 1223566666666778999999999999998443 223
Q ss_pred hHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCc
Q 008781 482 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 482 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
+..+. ...|.|...+.+.++..|.-|+.++.+|+-....
T Consensus 1031 kdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g 1069 (1172)
T KOG0213|consen 1031 KDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG 1069 (1172)
T ss_pred hhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC
Confidence 33332 2467888888899999999999999998876443
No 78
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.55 E-value=1.1e-06 Score=69.32 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHH
Q 008781 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 56 ~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (554)
+..+..+|.-.... .+.+.+.+...-|+|++.+|-+-..+.+..+++.++.-|...+. .+.+.
T Consensus 15 l~Ylq~LV~efq~t-----t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne------------~Lvef 77 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTT-----TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE------------LLVEF 77 (173)
T ss_pred HHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH------------HHHHH
Confidence 44455555444433 25567888889999999999999999999999999999999887 99999
Q ss_pred HHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 008781 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (554)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (554)
+...|+|+|-++.+...|.+.+++|.++..++++.. .+...++.++..++..+...+..+.....+..+
T Consensus 78 gIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e--------~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 78 GIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPE--------ITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred hHHHHHhhccChHHHHHHHHhcCCceEEeecCCChH--------HHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 999999999999999999999999999999998876 888999999999998776666655443333333
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.53 E-value=3.3e-05 Score=76.38 Aligned_cols=243 Identities=16% Similarity=0.052 Sum_probs=159.8
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (554)
+++.++..|...... ++...++.++. ..+.+. .+..++..+.+.++.++..+..+|..+-.
T Consensus 55 a~~~L~~aL~~d~~~-------ev~~~aa~al~--~~~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~- 115 (410)
T TIGR02270 55 ATELLVSALAEADEP-------GRVACAALALL--AQEDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLGG- 115 (410)
T ss_pred HHHHHHHHHhhCCCh-------hHHHHHHHHHh--ccCChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-
Confidence 467777777543321 55444444332 121111 26788888888888888888888876542
Q ss_pred CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHH
Q 008781 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~n 317 (554)
.+..+.|+.+|.+.++.++..++.++...- ....+.+..+|.+.++.++..|+.+|+.
T Consensus 116 ----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 116 ----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred ----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 345678888888888888888887776631 1234567888888888899999999888
Q ss_pred HhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHH
Q 008781 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 397 (554)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 397 (554)
+.. ...++.|...+.+.++.+|..|++++..+.. ...+..+..+...........+..+
T Consensus 174 l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~~~~~~l~~~ 232 (410)
T TIGR02270 174 LPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGGPHRQRLLVL 232 (410)
T ss_pred hcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCccHHHHHHHH
Confidence 742 2245667777888889999988888866632 1234455553333333333333333
Q ss_pred HHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcC
Q 008781 398 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (554)
Q Consensus 398 L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 477 (554)
+... ..+ ..+..|..+++++. ++..++.+++.+-
T Consensus 233 lal~-~~~------------------------------------------~a~~~L~~ll~d~~--vr~~a~~AlG~lg- 266 (410)
T TIGR02270 233 LAVA-GGP------------------------------------------DAQAWLRELLQAAA--TRREALRAVGLVG- 266 (410)
T ss_pred HHhC-Cch------------------------------------------hHHHHHHHHhcChh--hHHHHHHHHHHcC-
Confidence 3333 111 13677777777754 8999999999853
Q ss_pred CchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 478 PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 478 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
....++.|+..+.++ .++..|..++..|+.-
T Consensus 267 ---------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 267 ---------DVEAAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred ---------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 334678888888744 3888899999988863
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=98.51 E-value=0.00013 Score=75.41 Aligned_cols=188 Identities=14% Similarity=0.143 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHhccC-h---hhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 008781 77 RAAAKRATHVLAELAKN-E---EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (554)
Q Consensus 77 ~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (554)
...+..++-.+.++..+ + ..++.+.+.=+.+.|-++|+++...... .....+.-|+.+|+.+|.+|+....
T Consensus 19 D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-----~~~~~~~LavsvL~~f~~~~~~a~~ 93 (543)
T PF05536_consen 19 DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-----PPEEYLSLAVSVLAAFCRDPELASS 93 (543)
T ss_pred cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-----CHHHHHHHHHHHHHHHcCChhhhcC
Confidence 34778888889998884 3 2233466666689999999986542111 2347888899999999988776533
Q ss_pred HHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 008781 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (554)
Q Consensus 153 i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (554)
---.+-||.|+..+...... ++...|+.+|..++. .++-+..+...|.++.|.+.+.+ .+.....++.++.
T Consensus 94 ~~~~~~IP~Lle~l~~~s~~-------~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 94 PQMVSRIPLLLEILSSSSDL-------ETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred HHHHHHHHHHHHHHHcCCch-------hHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 33335599999999887662 888999999999995 77778889999999999999977 5666788888888
Q ss_pred HhccCCcc-c---hHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 008781 233 TLAFKNDE-N---KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (554)
Q Consensus 233 ~l~~~~~~-~---~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 279 (554)
+++..... . ..... ..+++.+-..+.......+...+..|..+...
T Consensus 165 ~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 88763221 0 00000 12344444444444555566666666666543
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.50 E-value=7.7e-05 Score=72.94 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=138.2
Q ss_pred HHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC--CCHHHH
Q 008781 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIH 266 (554)
Q Consensus 189 L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~ 266 (554)
|..+...++..+..+.-....+.+..++-+++..++..+.++++.+.. +......+.+.++--.++.-|.. .+..=|
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 334444466555555545555666655656669999999999999997 67777777777655555555553 345568
Q ss_pred HHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCC
Q 008781 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (554)
Q Consensus 267 ~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 346 (554)
.+|++.+..+...... ..-+..|++..++.+..+.++..+..|..+|..++-.+++ .+...|++..++..+.++.
T Consensus 86 ~QALkliR~~l~~~~~--~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKG--PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGS 160 (371)
T ss_pred HHHHHHHHHHHHhcCC--cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhcc
Confidence 8999999888654222 1223567899999999999999999999999999865554 4778999999999999877
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh
Q 008781 347 VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 383 (554)
Q Consensus 347 ~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll 383 (554)
..+.+..+.++..+...+..|..+...--+..++.-+
T Consensus 161 ~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 161 FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhh
Confidence 7799999999999998888877665544455544433
No 82
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.50 E-value=0.00011 Score=76.47 Aligned_cols=437 Identities=13% Similarity=0.073 Sum_probs=230.8
Q ss_pred hhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccC-hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHH
Q 008781 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (554)
Q Consensus 55 ~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~ 133 (554)
....++++...+.+.....++...++.+++.++..+... ...... ...+++..++.-+.++-. .|+
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~------------aVr 191 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRL------------AVR 191 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHH------------HHH
Confidence 346778888888888877777777999999999887552 111111 445677778888877766 999
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 008781 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (554)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (554)
..++.+|+.++ ..+.. .-.+.+..|++-|...... ...+.-+.+|..+|.. ...+.--.....+|.+
T Consensus 192 Kkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~-------~~~rt~Iq~l~~i~r~-ag~r~~~h~~~ivp~v 259 (1233)
T KOG1824|consen 192 KKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQM-------SATRTYIQCLAAICRQ-AGHRFGSHLDKIVPLV 259 (1233)
T ss_pred HHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCch-------HHHHHHHHHHHHHHHH-hcchhhcccchhhHHH
Confidence 99999999999 33221 1123355555555554332 6777788888888872 2222222234567888
Q ss_pred HHhh---cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC-----------------------C-----
Q 008781 213 VELL---EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----------------------E----- 261 (554)
Q Consensus 213 ~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-----------------------~----- 261 (554)
.+++ +..+.++++.++.++..+....+.+...+. ..++..+++.+.. +
T Consensus 260 ~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~-pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deY 338 (1233)
T KOG1824|consen 260 ADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHV-PEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEY 338 (1233)
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccc-hHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcccc
Confidence 8888 667889999999999888875554432222 1233444444430 0
Q ss_pred ------CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCC-------------
Q 008781 262 ------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD------------- 322 (554)
Q Consensus 262 ------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~------------- 322 (554)
+..||+.|+.|+..+..+..+.-..+.. .+-+.++.-+......++.....+.-.+....
T Consensus 339 sDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~ 417 (1233)
T KOG1824|consen 339 SDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAM 417 (1233)
T ss_pred ccccchhHHHHHHHHHHHHHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhh
Confidence 0268999999998887654443322221 22333333333333323222222211111000
Q ss_pred -----cccHHHHHH-------------------------------------------cCCHHHHHHHhCC--CCHHHHHH
Q 008781 323 -----SDCKVHIVQ-------------------------------------------RGAVRPLIEMLQS--PDVQLREM 352 (554)
Q Consensus 323 -----~~~~~~~~~-------------------------------------------~~~~~~L~~~l~~--~~~~v~~~ 352 (554)
+.....+.+ ...+|.++..+.+ .....+..
T Consensus 418 e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~ 497 (1233)
T KOG1824|consen 418 EQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKID 497 (1233)
T ss_pred hccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHH
Confidence 000000000 0112222222222 22345555
Q ss_pred HHHHHHHHhcCCCc-chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhH---HHhhCcccccc-------
Q 008781 353 SAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD---FIRVGGVQKLQ------- 421 (554)
Q Consensus 353 a~~~L~~L~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~i~~L~------- 421 (554)
++..+.++...... .-.-......+++.....++-+.+...|+.+...++..-..... +-..-.+..+.
T Consensus 498 ~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL 577 (1233)
T KOG1824|consen 498 ALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRL 577 (1233)
T ss_pred HHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHH
Confidence 55555554332211 11112223344455555566677777777766666532111100 00000111111
Q ss_pred chhhhhhhhHHHHH----HHHHHHHHHHhhchHHHHHHHH--hhCCHHHHHHHHHHHHhhcCCchh-hHHHHHcCcHHHH
Q 008781 422 DGEFIVQATKDCVA----KTLKRLEEKIHGRVLNHLLYLM--RVAEKGVQRRVALALAHLCSPDDQ-RTIFIDGGGLELL 494 (554)
Q Consensus 422 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L 494 (554)
.....-|..+++.. ..+.++.+. .+..++..+..+ +-.+...|..|+++++.++..+-. ...-+-..+++.|
T Consensus 578 ~a~d~DqeVkeraIscmgq~i~~fgD~-l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 578 KATDSDQEVKERAISCMGQIIANFGDF-LGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 11222344444433 333344433 333355555544 336778899999999999766542 1122333456777
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 495 LGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 495 ~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
...+.......+.....++-.|..+
T Consensus 657 ~~flrK~~r~lr~~~l~a~~~L~~~ 681 (1233)
T KOG1824|consen 657 ASFLRKNQRALRLATLTALDKLVKN 681 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777655556666666666666654
No 83
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.49 E-value=1.3e-05 Score=79.18 Aligned_cols=263 Identities=16% Similarity=0.148 Sum_probs=165.2
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhh--HHHHHHcCChHHHHHHHhccccCccccchhHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~--~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (554)
+|...+.+|++.++ .++.+|+...+.|+ .-..+ ...+...|.+ |...|....+ ++
T Consensus 605 ivStiL~~L~~k~p------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~yp--------Ev 662 (975)
T COG5181 605 IVSTILKLLRSKPP------------DVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYP--------EV 662 (975)
T ss_pred HHHHHHHHhcCCCc------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccH--------HH
Confidence 45666778888877 89999999998887 11111 1222233321 3334444443 66
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccch---HHHHhcCCHHHHHHhh
Q 008781 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---NQIVECNALPTLILML 258 (554)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~~~~L~~ll 258 (554)
.-..+.+++.+..-..--..+--..|++|.|.-.|++....+.......+..++...++.. +-+. +.-.|+..|
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L 739 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL 739 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH
Confidence 6666666665553111111111236889999999999999999999999999998666531 1121 234577888
Q ss_pred cCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHH
Q 008781 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (554)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L 338 (554)
++.+.++|..|..+++.++.. +.-++++..|+.-|...+-..+.....+++-++.. |. -..++|.|
T Consensus 740 ks~nKeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~---cg----pfsVlP~l 805 (975)
T COG5181 740 KSWNKEIRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEY---CG----PFSVLPTL 805 (975)
T ss_pred HHhhHHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---cC----chhhHHHH
Confidence 899999999999999999642 11123445555555544444444444455544421 10 12345655
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc
Q 008781 339 IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 406 (554)
Q Consensus 339 ~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 406 (554)
+.--..++..++.-.+.+++.+-..-.+...=.-....|.|-+.|.+.++.-+..|...+..|+.+..
T Consensus 806 m~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 806 MSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 55555677888888888888876544333221222345667778889999999999999999987744
No 84
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00011 Score=74.85 Aligned_cols=360 Identities=16% Similarity=0.114 Sum_probs=230.7
Q ss_pred HHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHH
Q 008781 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (554)
Q Consensus 107 ~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~ 186 (554)
.-|.++|++.... ..+++.-++++.++.+.+. ....|.+++.....+. ++++..-
T Consensus 38 ~dL~~lLdSnkd~-----------~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~--------EVKkLVy 92 (968)
T KOG1060|consen 38 DDLKQLLDSNKDS-----------LKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNI--------EVKKLVY 92 (968)
T ss_pred HHHHHHHhccccH-----------HHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCH--------HHHHHHH
Confidence 3567788877651 4455555677777755443 2346777777777666 8888877
Q ss_pred HHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHH
Q 008781 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266 (554)
Q Consensus 187 ~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 266 (554)
--|...+...++.. .=.|..+-+-|+++++-+|..|+++|..+=- -++..=++-.+-+...+..+.||
T Consensus 93 vYLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVR 160 (968)
T KOG1060|consen 93 VYLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVR 160 (968)
T ss_pred HHHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHH
Confidence 77777777555432 1246788889999999999988888876642 11111112233455668899999
Q ss_pred HHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCC
Q 008781 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (554)
Q Consensus 267 ~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 346 (554)
..|+.++-.|-+-.++.+.. ++..+-.+|.+.++-+.-.|+.+.-.+| ++....+ ++-...++.++.+-+
T Consensus 161 k~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evC---PerldLI--HknyrklC~ll~dvd 230 (968)
T KOG1060|consen 161 KTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLI--HKNYRKLCRLLPDVD 230 (968)
T ss_pred HHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHh--hHHHHHHHhhccchh
Confidence 99999999996666665443 4567778888889999999999998887 4443333 334678888888766
Q ss_pred HHHHHHHHHHHHHHhcCCCcch-------------------------hhhhcCCHHHH----HHHhcCCChhHHHHHHHH
Q 008781 347 VQLREMSAFALGRLAQDMHNQA-------------------------GIAHNGGLVPL----LKLLDSKNGSLQHNAAFA 397 (554)
Q Consensus 347 ~~v~~~a~~~L~~L~~~~~~~~-------------------------~l~~~~~l~~L----~~ll~~~~~~v~~~a~~~ 397 (554)
..-+...+.+|..-|++.-... ......-+..| -.++.+.++.|..+++.+
T Consensus 231 eWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql 310 (968)
T KOG1060|consen 231 EWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQL 310 (968)
T ss_pred hhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhH
Confidence 6667777777777775421110 01111112233 345678899999999999
Q ss_pred HHHcccCCcchhHHHhhCccccccchhhhhhhhH----------------------------------HHHH--HHHHHH
Q 008781 398 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK----------------------------------DCVA--KTLKRL 441 (554)
Q Consensus 398 L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~----------------------------------~~~~--~~~~~l 441 (554)
++.++...+.. .++ +.|+......+..+ .|+. +.+.++
T Consensus 311 ~y~lAP~~~~~-~i~-----kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~L 384 (968)
T KOG1060|consen 311 FYHLAPKNQVT-KIA-----KALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNL 384 (968)
T ss_pred HHhhCCHHHHH-HHH-----HHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHH
Confidence 99998654221 121 12221111100000 0000 111222
Q ss_pred HH-HHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 442 EE-KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 442 ~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
.. ---..+++.+...+++.+..+...++.+|+..+..... +....+.-|+.++.+.+..|..++...+..|....
T Consensus 385 a~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 385 ANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred hhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 11 12445778888888888878888888888887544221 22345789999999999999999999999999876
Q ss_pred CcC
Q 008781 521 TTL 523 (554)
Q Consensus 521 ~~~ 523 (554)
+..
T Consensus 461 p~~ 463 (968)
T KOG1060|consen 461 PAE 463 (968)
T ss_pred hHH
Confidence 543
No 85
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.46 E-value=1.7e-06 Score=68.33 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=112.0
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (554)
++++.|+.-.....+. +.++....-|.|++. +|.+-..+.+...+..++..+..++..+...+++.|+|+|.
T Consensus 16 ~Ylq~LV~efq~tt~~-------eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNI-------EAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred HHHHHHHHHHHHhccH-------HHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc
Confidence 3455565555544332 888999999999998 77778889999999999999999999999999999999998
Q ss_pred CCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 008781 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (554)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (554)
++.+...+.+.++++.++..+.++...+...++.++..|+......+..+....++..+..+-
T Consensus 88 -d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 88 -DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred -ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999887776667776655555555444
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=0.00021 Score=71.48 Aligned_cols=343 Identities=15% Similarity=0.106 Sum_probs=195.8
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (554)
+.+.+.+++..+.. .-+..+++.++.+..+.. -..+.+.+.+..+.....+.... .-++.
T Consensus 135 ~l~~l~~ll~~~~~------------~~~~~aa~~~ag~v~g~~-i~~~~~~~~l~~l~~ai~dk~~~-------~~re~ 194 (569)
T KOG1242|consen 135 VLELLLELLTSTKI------------AERAGAAYGLAGLVNGLG-IESLKEFGFLDNLSKAIIDKKSA-------LNREA 194 (569)
T ss_pred HHHHHHHHhccccH------------HHHhhhhHHHHHHHcCcH-HhhhhhhhHHHHHHHHhcccchh-------hcHHH
Confidence 45667777776555 666777787777774432 24455667788888888776652 22222
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCc-cchHHHHhcCCHHHHHHhhcCCCH
Q 008781 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDS 263 (554)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~ 263 (554)
+..+.-..+..--..++ -.....+|.++....+....+|.+|..+...+...-+ ..... +++.++.-+.....
T Consensus 195 ~~~a~~~~~~~Lg~~~E-Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kW 268 (569)
T KOG1242|consen 195 ALLAFEAAQGNLGPPFE-PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKW 268 (569)
T ss_pred HHHHHHHHHHhcCCCCC-chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhh
Confidence 33333332321111110 1112334555555556677888887777766654222 11111 23444443433466
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC
Q 008781 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (554)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~ 343 (554)
.....++..++.++...+.. -...-..++|.+.+.|.+..+++++.+..++.++++.-+ +.. -..++|.|+..+.
T Consensus 269 rtK~aslellg~m~~~ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~d---I~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPD---IQKIIPTLLDALA 343 (569)
T ss_pred hhHHHHHHHHHHHHHhchHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHH---HHHHHHHHHHHhc
Confidence 77888999999887765553 455557899999999999999999999999999975322 111 1235788888888
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCC----HHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCcccc
Q 008781 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGG----LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 419 (554)
Q Consensus 344 ~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~ 419 (554)
++...+.+ ++-.|.... -...+.... ++.|.+-+...+..+...++.++.|++.--++...+..
T Consensus 344 dp~~~~~e----~~~~L~~tt--FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap------ 411 (569)
T KOG1242|consen 344 DPSCYTPE----CLDSLGATT--FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP------ 411 (569)
T ss_pred CcccchHH----HHHhhccee--eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh------
Confidence 77644443 233332211 111122222 33344455666788889999999999865433322221
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhC
Q 008781 420 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 499 (554)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~ 499 (554)
+-..++|.+-..+.+..|++|..+.++|+.+...-..... .+.++.+.+.+.
T Consensus 412 -------------------------fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 412 -------------------------FLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLT 463 (569)
T ss_pred -------------------------hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhc
Confidence 0011234444455557899999999999887544322211 444555555554
Q ss_pred CCCh-hHHHHHHHHHHHHHh
Q 008781 500 STNP-KQQLDGAVALFKLAN 518 (554)
Q Consensus 500 ~~~~-~v~~~a~~~L~~L~~ 518 (554)
+... ..+.-++..|..+..
T Consensus 464 ~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 464 SEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred cchhhhhhHHHhhhHHHHHh
Confidence 3222 233344444444443
No 87
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00017 Score=75.62 Aligned_cols=303 Identities=17% Similarity=0.179 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHhcc-ChhhHHHHHh----CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 008781 79 AAKRATHVLAELAK-NEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (554)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~----~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i 153 (554)
...-++.+|.|+.. +|+....+.+ .|-.+.+..+|..... +.++..|+..+..+..+.++...+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~-----------~~iq~LaL~Vi~~~Tan~~Cv~~~ 1809 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKH-----------PKLQILALQVILLATANKECVTDL 1809 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCC-----------chHHHHHHHHHHHHhcccHHHHHH
Confidence 45678889999887 8877766654 3777888888877654 289999999999888888999999
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHH
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALR 232 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~ 232 (554)
+..|.+..|+.+|.+.. ..+..++.+|+.|+. +++........|++..+..+ +.+.++..+.+++..+.
T Consensus 1810 a~~~vL~~LL~lLHS~P---------S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHSQP---------SMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLA 1879 (2235)
T ss_pred HhhhHHHHHHHHHhcCh---------HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHH
Confidence 99999999999997642 789999999999998 66666666778887777765 46677889999999999
Q ss_pred HhccCC---ccchHHHHhc----------CCHHHHHHhhcC--CCH------HHHHHHHHHHHHHhcc-------Chh--
Q 008781 233 TLAFKN---DENKNQIVEC----------NALPTLILMLRS--EDS------AIHYEAVGVIGNLVHS-------SPN-- 282 (554)
Q Consensus 233 ~l~~~~---~~~~~~~~~~----------~~~~~L~~ll~~--~~~------~v~~~a~~~L~~L~~~-------~~~-- 282 (554)
.+..+. |...-.+++. +..+..++++.. +++ ..+...-..+..++.. ++.
T Consensus 1880 Kl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~ 1959 (2235)
T KOG1789|consen 1880 KLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVK 1959 (2235)
T ss_pred HhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 998642 2111111211 122444444442 222 2233333333333210 000
Q ss_pred -----------------------hHHHHH------------HcCCHHHHHHHhccCChH--HHHHHHHHHHHHhcCCccc
Q 008781 283 -----------------------IKKEVL------------AAGALQPVIGLLSSCCSE--SQREAALLLGQFAATDSDC 325 (554)
Q Consensus 283 -----------------------~~~~~~------------~~~~l~~L~~lL~~~~~~--~~~~a~~~L~nl~~~~~~~ 325 (554)
.+..+. -.++++.+..++...+++ ...--..++..|.+..+..
T Consensus 1960 W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~L 2039 (2235)
T KOG1789|consen 1960 WNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNL 2039 (2235)
T ss_pred ccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcch
Confidence 001111 112344455555443322 2222222333344455555
Q ss_pred HHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHccc
Q 008781 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (554)
Q Consensus 326 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (554)
..++-.-|.+|.++..+...+..+-..|+..|..|+.+.-....+.....+..+++.+... +.....|+.+|..+..
T Consensus 2040 ADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~ 2116 (2235)
T KOG1789|consen 2040 ADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMK 2116 (2235)
T ss_pred hhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHH
Confidence 5566667999999998876555666789999999998888888888888888888877543 3444577888887754
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.42 E-value=1.2e-06 Score=86.15 Aligned_cols=269 Identities=15% Similarity=0.095 Sum_probs=173.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccC--CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHH
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (554)
++..++.+|++..+.++..|+.....++.- +-.....+...| ..|..-+...++++.-..+.+++.+.+...-..-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 466778889999999999999888877631 011122233333 3466778888999999888888888543211111
Q ss_pred HHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC
Q 008781 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (554)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~ 365 (554)
..=-.|++|.|..+|++.+..+.......++.++...++....=--..+---|+.+|++.+-++|.+|..+++.+++.-.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 11125799999999999999999999999999987666532110001122346677788899999999999999986433
Q ss_pred cchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHH
Q 008781 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (554)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 445 (554)
.+ .++..|++-|..++-+.+....-++.-.+.....
T Consensus 763 Pq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------------------------------------- 798 (975)
T COG5181 763 PQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------------------------------------- 798 (975)
T ss_pred HH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc--------------------------------------
Confidence 32 2445555555544433333322233333222111
Q ss_pred hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch--hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCcC
Q 008781 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 523 (554)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 523 (554)
..++|.|+.--.+++..||.-++++++.+-..-. .+..+. ...|.|...+.+.++..|.-|.-.+.+|+-.....
T Consensus 799 -fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 799 -FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred -hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 1135555555566888899999999988844322 333322 34677788888899999999999999998875544
Q ss_pred cc
Q 008781 524 SS 525 (554)
Q Consensus 524 ~~ 525 (554)
..
T Consensus 876 g~ 877 (975)
T COG5181 876 GD 877 (975)
T ss_pred cc
Confidence 43
No 89
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=6.3e-06 Score=80.10 Aligned_cols=259 Identities=15% Similarity=0.120 Sum_probs=180.3
Q ss_pred HHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 008781 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (554)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (554)
+++.+|-.++ .-.-.|.-+.+..+.+.|+++|+++.. -+...+...+.|+....++.+..+...+++..++
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--------mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~ 479 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--------MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLV 479 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------eeeccchhhhhheeeeccchHHHHHHhhHHHHHH
Confidence 3444444454 333456667788899999999999755 5556678889999888899999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCCccc-hHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhh---HHHHHH
Q 008781 214 ELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLA 289 (554)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~ 289 (554)
.++.+.|..++....|.++++..+...+ +-.+...-++..++.+..++.-.|+..++..|.|+..++..+ +.-.+.
T Consensus 480 ~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K 559 (743)
T COG5369 480 NLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK 559 (743)
T ss_pred HHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEe
Confidence 9999999999999999999999865544 334566667999999999999999999999999998744332 111111
Q ss_pred cC----CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHH-cCCHHHHHHHh----------------------
Q 008781 290 AG----ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEML---------------------- 342 (554)
Q Consensus 290 ~~----~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-~~~~~~L~~~l---------------------- 342 (554)
.. +...++..++..++-...+.+..|.+++..+...+..+.+ ..++..+..+|
T Consensus 560 ~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~ 639 (743)
T COG5369 560 ATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI 639 (743)
T ss_pred cChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence 11 3455666677777766777788888888766555444443 33443333333
Q ss_pred ---------------------------C----CCCHHHHHHHHHHHHHHhcCCC---------cchh-hhhcCCHHHHHH
Q 008781 343 ---------------------------Q----SPDVQLREMSAFALGRLAQDMH---------NQAG-IAHNGGLVPLLK 381 (554)
Q Consensus 343 ---------------------------~----~~~~~v~~~a~~~L~~L~~~~~---------~~~~-l~~~~~l~~L~~ 381 (554)
+ .++.++-.++.|.+.|+.-... .|.. +.+.|.-+-+..
T Consensus 640 s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k 719 (743)
T COG5369 640 SYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK 719 (743)
T ss_pred ceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence 0 1123456677777777642211 1222 445555555666
Q ss_pred HhcCCChhHHHHHHHHHHHc
Q 008781 382 LLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 382 ll~~~~~~v~~~a~~~L~~l 401 (554)
+..++++.|++.+-.+|.++
T Consensus 720 ~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 720 IQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HhccCcHHHHHHHHHHHHhh
Confidence 66777789999999998876
No 90
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.32 E-value=0.00023 Score=70.45 Aligned_cols=211 Identities=22% Similarity=0.119 Sum_probs=143.5
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (554)
+..|+..|.+.+. .++..++.+|+.+-.. ...+.|+.+|++.+. .++..+
T Consensus 88 ~~~L~~~L~d~~~------------~vr~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p--------~vR~aa 137 (410)
T TIGR02270 88 LRSVLAVLQAGPE------------GLCAGIQAALGWLGGR----------QAEPWLEPLLAASEP--------PGRAIG 137 (410)
T ss_pred HHHHHHHhcCCCH------------HHHHHHHHHHhcCCch----------HHHHHHHHHhcCCCh--------HHHHHH
Confidence 7788888877766 7888888888866422 235777888876655 677666
Q ss_pred HHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHH
Q 008781 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (554)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 265 (554)
+.++...- ....+.+..++++.++.++..|+.+|..+-. ...++.|...+.+.++.|
T Consensus 138 l~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 138 LAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEV 194 (410)
T ss_pred HHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHH
Confidence 66655521 1234577788888888888888888888764 235666777788888899
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCC
Q 008781 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (554)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~ 345 (554)
|..|++.+..+ +.+. .+..+..+...........+...+... .++ ..++.|..+++++
T Consensus 195 R~aA~~al~~l--G~~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~ 252 (410)
T TIGR02270 195 RFAALEAGLLA--GSRL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAA 252 (410)
T ss_pred HHHHHHHHHHc--CCHh---------HHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcCh
Confidence 98888888766 2222 234455544444443443333333333 111 4678888888875
Q ss_pred CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC
Q 008781 346 DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (554)
Q Consensus 346 ~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (554)
. ++..++++++.+-. ...++.|+..+.+.. ++..|..++..|+.-+
T Consensus 253 ~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 253 A--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred h--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 4 88999999998753 347888888887543 8889999999997643
No 91
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=2.4e-06 Score=82.97 Aligned_cols=189 Identities=14% Similarity=0.124 Sum_probs=144.3
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (554)
..++-+|..++..-.-.|.-+.+..+...|+++|.+++..+...+...++|..-.-...+..+.+.|+++.+++++.+.|
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 34455666666655556667777888999999999988888888888999988655566777899999999999999999
Q ss_pred HHHHHHHHHHHHHHhccChhh-HHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcc---cHHHHHH---cC-C
Q 008781 263 SAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD---CKVHIVQ---RG-A 334 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~---~~~~~~~---~~-~ 334 (554)
..++....|.+..+..+.... +-.++..-++..++.+..+++..++..+..+|.|++..... .+..+.. .. +
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 999999999999998765443 44566777899999999999999999999999999864332 1111111 11 4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhh
Q 008781 335 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA 371 (554)
Q Consensus 335 ~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~ 371 (554)
...|++.+...+|-.....+..|.+++..+++...++
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 5667777777777766777899998887766655443
No 92
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.28 E-value=7.2e-05 Score=75.50 Aligned_cols=273 Identities=18% Similarity=0.201 Sum_probs=178.4
Q ss_pred HHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHH
Q 008781 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSH 161 (554)
Q Consensus 83 a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~ 161 (554)
|+.+|+-+++++.....+....++..|.++-.-... ........++.+...|+++|+|+. .++..|+.+.+.|+.+.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~--~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSES--DEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCccc--ccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 356788888888888888877778887776522111 001112235589999999999999 99999999999999999
Q ss_pred HHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc-CChHHHHHhhcC-----------------CCHHH
Q 008781 162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-----------------TDTKV 223 (554)
Q Consensus 162 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~L~~ll~~-----------------~~~~v 223 (554)
++..|+........ +++......+|.-++...+..+..+.+. +++..+...+.. .+...
T Consensus 79 l~~~Lk~~~~~~~~---~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 155 (446)
T PF10165_consen 79 LCERLKNYSDSSQP---SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEA 155 (446)
T ss_pred HHHHHHcccccCCC---hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHH
Confidence 99999987432111 1788888888888887777777666664 677777765531 13456
Q ss_pred HHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc---------CCCHHHHHHHHHHHHHHhccChhhHHHH-------
Q 008781 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR---------SEDSAIHYEAVGVIGNLVHSSPNIKKEV------- 287 (554)
Q Consensus 224 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~~~~~~~------- 287 (554)
...+++.+.|++.+.+..... .....++.++.++. .+.......++.+|.|+=- .....+
T Consensus 156 l~EiLKllFNit~~~~~~~~~-~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl---~~~~~l~~~~~~~ 231 (446)
T PF10165_consen 156 LSEILKLLFNITLHYPKSVPE-EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL---ECLDSLLSPKFQQ 231 (446)
T ss_pred HHHHHHHHHHhhhccCcccch-hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh---HHHhhhhcccCCc
Confidence 778899999998765444330 11223444443332 1234677788888887721 111111
Q ss_pred -------HHcCCHHHHHHHhcc----CC----hHHHHHHHHHHHHHhcCCcccHHHHHH----------------cCCHH
Q 008781 288 -------LAAGALQPVIGLLSS----CC----SESQREAALLLGQFAATDSDCKVHIVQ----------------RGAVR 336 (554)
Q Consensus 288 -------~~~~~l~~L~~lL~~----~~----~~~~~~a~~~L~nl~~~~~~~~~~~~~----------------~~~~~ 336 (554)
.....+..|+.+|.. .. .+.....+.+|.+++..+...+..+.. ..+-.
T Consensus 232 ~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~ 311 (446)
T PF10165_consen 232 SSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRS 311 (446)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence 112245666666642 11 234455666777777665554444432 23556
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcCC
Q 008781 337 PLIEMLQSPDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 337 ~L~~~l~~~~~~v~~~a~~~L~~L~~~~ 364 (554)
.|+.++.++.+.++..+...|..||..+
T Consensus 312 rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 312 RLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 7899999888999999999999998643
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.01 Score=62.99 Aligned_cols=424 Identities=16% Similarity=0.132 Sum_probs=250.4
Q ss_pred HHHHHHHHHHhccChhhHHHHHhC-CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q 008781 80 AKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (554)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~ 158 (554)
......++.-.+.-++.|..+.+- .+|.-|++++.-... |.+...++.++..++.++..+-.+.+.|+
T Consensus 1457 c~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~v-----------Pr~~~aa~qci~~~aVd~~LQ~~LfqAG~ 1525 (2235)
T KOG1789|consen 1457 CIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNL-----------PRLSTAAAQCIRAMAVDTLLQFQLFQAGV 1525 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccc-----------cHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Confidence 344455555555557777777664 577888888876554 27888999999999999999999999999
Q ss_pred hHHHHHHHhccccCcc------------ccchhHHHHHHHHHHHHHhh---------cCchhHHHHH-----------hc
Q 008781 159 LSHLVNLLKRHMDSNC------------SRAVNSVIRRAADAITNLAH---------ENSSIKTRVR-----------ME 206 (554)
Q Consensus 159 l~~L~~lL~~~~~~~~------------~~~~~~~~~~a~~~L~~L~~---------~~~~~~~~~~-----------~~ 206 (554)
+-+|+.+|-+.+.... +...++....++.+|..|.. +++..+..+. ..
T Consensus 1526 LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~ 1605 (2235)
T KOG1789|consen 1526 LWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKL 1605 (2235)
T ss_pred HHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHH
Confidence 9999998865432111 11122455556666666553 1111111110 00
Q ss_pred CChHHHHHhhcCC-------------------------------------------------------------------
Q 008781 207 GGIPPLVELLEFT------------------------------------------------------------------- 219 (554)
Q Consensus 207 ~~i~~L~~ll~~~------------------------------------------------------------------- 219 (554)
.....+++.|++.
T Consensus 1606 e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~ 1685 (2235)
T KOG1789|consen 1606 ETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFA 1685 (2235)
T ss_pred HHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchh
Confidence 0111111111100
Q ss_pred ----------------------------------------------------CHHHHHHHHHHHHHhccCCccchHHHH-
Q 008781 220 ----------------------------------------------------DTKVQRAAAGALRTLAFKNDENKNQIV- 246 (554)
Q Consensus 220 ----------------------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~- 246 (554)
...-...++.+|.|+...+|+....+-
T Consensus 1686 l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgS 1765 (2235)
T KOG1789|consen 1686 LHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGS 1765 (2235)
T ss_pred hcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccc
Confidence 012345688899999887775544432
Q ss_pred ---hcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCC
Q 008781 247 ---ECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (554)
Q Consensus 247 ---~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 322 (554)
--|.++.+...+. ..++.++..|+.++..++.+ .++...+...+.+..|+.+|.+. +..+..++.+|..|++.
T Consensus 1766 e~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~- 1842 (2235)
T KOG1789|consen 1766 EILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSN- 1842 (2235)
T ss_pred hhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcC-
Confidence 2366788887777 56788999999998777654 66778888999999999988754 67888999999999754
Q ss_pred cccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCC--cchhhhhcCCHHH-HHHHhcCCChhHHHHHHHHH
Q 008781 323 SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMH--NQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFAL 398 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~--~~~~l~~~~~l~~-L~~ll~~~~~~v~~~a~~~L 398 (554)
+.......++|.+..+.+++- +..++.|..++..++.|..+.- .+..+.--.++|. ++..+.++ + +++..++
T Consensus 1843 ~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~-P---EAaVH~f 1918 (2235)
T KOG1789|consen 1843 GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS-P---EAAVHMF 1918 (2235)
T ss_pred cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC-H---HHHHHHH
Confidence 556666778888887777766 5678899999999999986542 2222222224443 34444432 2 2333333
Q ss_pred HHcccCCcchh----HHHhhCccccccc-------------hhhhhhh------hHHHHHHH-HHHH-----------HH
Q 008781 399 YGLADNEDNVA----DFIRVGGVQKLQD-------------GEFIVQA------TKDCVAKT-LKRL-----------EE 443 (554)
Q Consensus 399 ~~l~~~~~~~~----~~~~~~~i~~L~~-------------~~~~~~~------~~~~~~~~-~~~l-----------~~ 443 (554)
..-..+++-.= +-.-.+.|..++. +....+. .++|.... ..+. -.
T Consensus 1919 E~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk 1998 (2235)
T KOG1789|consen 1919 ESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPK 1998 (2235)
T ss_pred hccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHH
Confidence 33333322100 0000011111111 1111111 01111110 0000 01
Q ss_pred HHhhchHHHHHHHHhhCCHHH--HHHHHHHHHhh-cCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 444 KIHGRVLNHLLYLMRVAEKGV--QRRVALALAHL-CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 444 ~~~~~~l~~L~~ll~~~~~~v--~~~a~~~L~~l-~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
.+-.+.++.++++|...+++= -.....++-.| ...+.-...+-..|-+|.++..+...+..+-+.|.++|..|+.+.
T Consensus 1999 ~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~ 2078 (2235)
T KOG1789|consen 1999 LFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ 2078 (2235)
T ss_pred HHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc
Confidence 133445677778886654421 11222223333 445556667778899999999998777777788999999998865
Q ss_pred C
Q 008781 521 T 521 (554)
Q Consensus 521 ~ 521 (554)
-
T Consensus 2079 ~ 2079 (2235)
T KOG1789|consen 2079 F 2079 (2235)
T ss_pred H
Confidence 3
No 94
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=0.00013 Score=76.89 Aligned_cols=391 Identities=18% Similarity=0.122 Sum_probs=250.0
Q ss_pred hhhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHH
Q 008781 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (554)
Q Consensus 53 ~~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v 132 (554)
..+......+++.+... ..+.++..++.-+.+++..-.. .....+.++.+.++..+... .|
T Consensus 232 ~~vk~elr~~~~~lc~d-----~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddqd------------sV 292 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQD-----DTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQD------------SV 292 (759)
T ss_pred HHHHHHHHHHHHhhccc-----cchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchh------------hH
Confidence 33444555555555444 3445666777777777763222 56778899999999988776 88
Q ss_pred HHHHHHHHHHhc---CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 133 EKGSAFALGLLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 133 ~~~a~~~L~~l~---~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
+..|...+.++. ..+. -......+.+++...+... .++.........++..-.. .......+
T Consensus 293 r~~a~~~~~~l~~l~~~~~----d~~~~~~~~l~~~~~d~~~--------~v~~~~~~~~~~L~~~~~~---~~~~~~~~ 357 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDD----DVVKSLTESLVQAVEDGSW--------RVSYMVADKFSELSSAVGP---SATRTQLV 357 (759)
T ss_pred HHHHHHHHHHHHHhcCCch----hhhhhhhHHHHHHhcChhH--------HHHHHHhhhhhhHHHHhcc---ccCcccch
Confidence 888888888877 2221 1222345666666666544 6666666665555542221 12223456
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
+....++++...+.+.+...-...++.. +......+....+++.+-.+..+.+..++...+..+..++--.+ ..-.
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~t 434 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERT 434 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcC
Confidence 7778888887777777666655555432 32334445555668888888888899999988888877743322 1111
Q ss_pred HcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcch
Q 008781 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (554)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~ 368 (554)
-.-..+.++..+++..+.++....+.+..+-...+......+....++.+..+-.+..+.++.+..+.+..++.... .
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~ 512 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V 512 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence 12467788888899899999999987776654444444456667788888888887789999999999999886433 2
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhc
Q 008781 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (554)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (554)
.+.....-+.+...+.+....++..|+..+..++.... ...- ...
T Consensus 513 ~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~----------------------------------~~~ 557 (759)
T KOG0211|consen 513 EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA----------------------------------RLE 557 (759)
T ss_pred HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh----------------------------------HHH
Confidence 33333333334444555667888888888777764322 1000 111
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
.++.++.....++...|...+.++..++.-- ...+.....++.+..+..++.+.||..++..|..+...
T Consensus 558 ~i~k~L~~~~q~~y~~R~t~l~si~~la~v~--g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMTTLFSIHELAEVL--GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred hhHHHHHHhcCcccchhhHHHHHHHHHHHHh--ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 2455555555556667777777766552211 11133444689999999999999999999999888764
No 95
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0013 Score=62.94 Aligned_cols=266 Identities=18% Similarity=0.177 Sum_probs=195.0
Q ss_pred HHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCCh----------hhHH
Q 008781 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP----------EHQQ 151 (554)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~----------~~~~ 151 (554)
..+.-+..++.-|+.-..+++.++|+.|+.+|.+.+. ++-...+..|..+.+.+ ..-+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt------------DI~iavvdLLqELTD~Dv~~es~egAevLid 170 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT------------DIAIAVVDLLQELTDEDVLYESEEGAEVLID 170 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc------------hhHHHHHHHHHHhhhhcccccccccHHHHHH
Confidence 4556666777789988899999999999999999999 88888999999988321 2346
Q ss_pred HHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHH
Q 008781 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAG 229 (554)
Q Consensus 152 ~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~ 229 (554)
.+++.++++.|++-+.+-+.....+. .-....+.++-|+..-.+.....+++.|.+.-|+.-+.. +-.....+|..
T Consensus 171 aLvdg~vlaLLvqnveRLdEsvkeea--~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasE 248 (536)
T KOG2734|consen 171 ALVDGQVLALLVQNVERLDESVKEEA--DGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASE 248 (536)
T ss_pred HHHhccHHHHHHHHHHHhhhcchhhh--hhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHH
Confidence 77888999999999887654332221 556778889999998888888888888877777764432 34456778899
Q ss_pred HHHHhccCCccchHHHHhcCCHHHHHHhhc-----C----CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 008781 230 ALRTLAFKNDENKNQIVECNALPTLILMLR-----S----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (554)
Q Consensus 230 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-----~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (554)
+|.-+..++.+++......+++..+++-+. + +..+.-.+...+|+.+... +.++..+....+++...-++
T Consensus 249 iLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lml 327 (536)
T KOG2734|consen 249 ILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLML 327 (536)
T ss_pred HHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHH
Confidence 999999877778888888889999987664 1 1346777778888887665 66678888888887776666
Q ss_pred ccCChHHHHHHHHHHHHHhcCCc--ccHHHHHHcCCHHHHHHHh-CCC---------CHHHHHHHHHHHHHHhcC
Q 008781 301 SSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEML-QSP---------DVQLREMSAFALGRLAQD 363 (554)
Q Consensus 301 ~~~~~~~~~~a~~~L~nl~~~~~--~~~~~~~~~~~~~~L~~~l-~~~---------~~~v~~~a~~~L~~L~~~ 363 (554)
+. ....+..+..+|-....+++ .+...+++..++..++... +.+ ....-++.+..|+.+-++
T Consensus 328 r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 328 RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 65 44566777888888876655 4556677766666555443 221 234566777777777653
No 96
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00084 Score=64.30 Aligned_cols=234 Identities=18% Similarity=0.208 Sum_probs=174.0
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-----ccc----hHHHHhcCCHHHHH
Q 008781 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-----DEN----KNQIVECNALPTLI 255 (554)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~----~~~~~~~~~~~~L~ 255 (554)
.+.-+.-++. -|.....+.+.++++.|+.+|.+.+.++..+....|..++..+ .+. ...+++.++++.|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 3444444444 6777777889999999999999999999999999999998532 122 34467778888888
Q ss_pred HhhcCCC------HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc--CChHHHHHHHHHHHHHhcCCcccHH
Q 008781 256 LMLRSED------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKV 327 (554)
Q Consensus 256 ~ll~~~~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~ 327 (554)
.-+..-+ ..-...++..+-|+..-.+.....+++.|.+..|+.-+.. .-......|..+|+-+...+..++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 7766322 3445677888899988888888999999998888875543 3355677788888888766666777
Q ss_pred HHHHcCCHHHHHHHhC-----C---C-CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHH
Q 008781 328 HIVQRGAVRPLIEMLQ-----S---P-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (554)
Q Consensus 328 ~~~~~~~~~~L~~~l~-----~---~-~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (554)
.+..-+++..+++-+. + . ..+.-++...+||.+...+.++..+....++.-..-+++. ....+..++.+|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 7778888888887764 2 1 3467788888999998999999999988888766555555 455677788888
Q ss_pred HHcccCCc---chhHHHhhCccccc
Q 008781 399 YGLADNED---NVADFIRVGGVQKL 420 (554)
Q Consensus 399 ~~l~~~~~---~~~~~~~~~~i~~L 420 (554)
-....+++ +...|++..|+...
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrti 366 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTI 366 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHH
Confidence 88866654 66678887766544
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00013 Score=74.80 Aligned_cols=365 Identities=18% Similarity=0.178 Sum_probs=215.7
Q ss_pred CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
+..+-++..+...+. +++..+---+.+-+ ..|+.. +-.+-.++++..++ .|.++
T Consensus 49 slF~dvvk~~~T~dl------------elKKlvyLYl~nYa~~~P~~a--------~~avnt~~kD~~d~-----np~iR 103 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDL------------ELKKLVYLYLMNYAKGKPDLA--------ILAVNTFLKDCEDP-----NPLIR 103 (734)
T ss_pred hhhHHHHhhcccCCc------------hHHHHHHHHHHHhhccCchHH--------HhhhhhhhccCCCC-----CHHHH
Confidence 446667777777766 88888888888888 555432 22333344443332 23777
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (554)
..|++.+..+-. +... ......+...+++.++.++..+.-+..++-. .+.+...+.|+++.|..++.+++
T Consensus 104 ~lAlrtm~~l~v--~~i~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~ 173 (734)
T KOG1061|consen 104 ALALRTMGCLRV--DKIT-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSN 173 (734)
T ss_pred HHHhhceeeEee--hHHH-----HHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCC
Confidence 777777766543 2111 2345688899999999999999988888753 45567788999999999999999
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l 342 (554)
+.|...|+.+|..+...+++.....+....+..++..+..++.--+.....++.+-...++ .. -..++..+...+
T Consensus 174 p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~---~e--a~~i~~r~~p~L 248 (734)
T KOG1061|consen 174 PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS---RE--AEDICERLTPRL 248 (734)
T ss_pred chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc---hh--HHHHHHHhhhhh
Confidence 9999999999999976554311111122233444444444333233333333333322111 11 123566677777
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCc---ccc
Q 008781 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG---VQK 419 (554)
Q Consensus 343 ~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---i~~ 419 (554)
+..++.+.-.+...+.++...............-++++.++.+.+ +++..++.=+.-+....+. +..... .=.
T Consensus 249 qh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---~~~~~~~~Ff~k 324 (734)
T KOG1061|consen 249 QHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---ILKVEIKVFFCK 324 (734)
T ss_pred ccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---HHHhHhHeeeee
Confidence 777777777777787777654444333333445666777777665 6665544433333222111 111110 000
Q ss_pred ccchhhhhhhhHHHHHHH--HHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHh
Q 008781 420 LQDGEFIVQATKDCVAKT--LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (554)
Q Consensus 420 L~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (554)
.-+..+.-..-.+|+... -.++ ..++..+...-..-+.+..+.+++++++++..-+.. ++.+..|+++
T Consensus 325 ynDPiYvK~eKleil~~la~~~nl-----~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLel 394 (734)
T KOG1061|consen 325 YNDPIYVKLEKLEILIELANDANL-----AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLEL 394 (734)
T ss_pred cCCchhhHHHHHHHHHHHhhHhHH-----HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHH
Confidence 011111111112222111 1111 114555555556678888999999999997654432 5678899999
Q ss_pred hCCCChhHHHHHHHHHHHHHhhcCc
Q 008781 498 LGSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
++....-+..++...+..+.++-+.
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCC
Confidence 9866666666678888888887553
No 98
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.0019 Score=63.91 Aligned_cols=352 Identities=13% Similarity=0.091 Sum_probs=197.2
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~ 154 (554)
+...|+.|+..|..+-++.... .-.|++++..+..-... .....-.++...+. .+++.+..+.
T Consensus 203 ~~isqYHalGlLyq~kr~dkma--------~lklv~hf~~n~smknq--------~a~V~lvr~~~~ll~~n~q~~~q~r 266 (898)
T COG5240 203 NPISQYHALGLLYQSKRTDKMA--------QLKLVEHFRGNASMKNQ--------LAGVLLVRATVELLKENSQALLQLR 266 (898)
T ss_pred ChHHHHHHHHHHHHHhcccHHH--------HHHHHHHhhcccccccc--------hhheehHHHHHHHHHhChHHHHHHH
Confidence 3446777887777776643321 33455555544321000 11223344455555 5555554443
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
|.|-..+++... -+...++..+..++..+- ...+. ...+..|-.+|+++....|..|+++|..+
T Consensus 267 -----pfL~~wls~k~e--------mV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~l 330 (898)
T COG5240 267 -----PFLNSWLSDKFE--------MVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQL 330 (898)
T ss_pred -----HHHHHHhcCcch--------hhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 556666666444 666777888887776442 11222 24567788889999999999999999999
Q ss_pred ccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHH
Q 008781 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~ 314 (554)
+...|..... +-+.+-.++.+.+..+...|+..|..- ++++....++. .++.++.=+.++-.-+...|.+.
T Consensus 331 am~~P~kv~v-----cN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rs 401 (898)
T COG5240 331 AMKYPQKVSV-----CNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRS 401 (898)
T ss_pred HhhCCceeee-----cChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHH
Confidence 9865543211 123444566677777777776666433 45554444332 33334443444333444455555
Q ss_pred HHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCC-cchhhhhcCCHHHHHHHhcCCC-hhHH
Q 008781 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKN-GSLQ 391 (554)
Q Consensus 315 L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~-~~~~l~~~~~l~~L~~ll~~~~-~~v~ 391 (554)
|+++. +..+.. .+..|...|. .+..+.+..+..++..+....+ .++ .++..|+..+.+-. +++.
T Consensus 402 Lsl~F---p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~ 468 (898)
T COG5240 402 LSLLF---PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQIT 468 (898)
T ss_pred HHhhC---cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHH
Confidence 55543 332222 2444555444 4566777777777777665432 222 13344555554322 3333
Q ss_pred HHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHH
Q 008781 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 471 (554)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 471 (554)
...+.+|+.=.-...+ .+..+.++..-+--.+.-+|..|+.+
T Consensus 469 vrIL~iLG~EgP~a~~--------------------------------------P~~yvrhIyNR~iLEN~ivRsaAv~a 510 (898)
T COG5240 469 VRILGILGREGPRAKT--------------------------------------PGKYVRHIYNRLILENNIVRSAAVQA 510 (898)
T ss_pred HHHHHHhcccCCCCCC--------------------------------------cchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333221111111 11234455555555677899999999
Q ss_pred HHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 472 LAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 472 L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
|..++.+.... +........|-.++++.+.++|..|+.+|.++-.+..
T Consensus 511 Lskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da 558 (898)
T COG5240 511 LSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDA 558 (898)
T ss_pred HHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhh
Confidence 99986654322 1222345678889999999999999999999986543
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=6.1e-05 Score=75.29 Aligned_cols=188 Identities=17% Similarity=0.179 Sum_probs=123.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh-----hhH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----NIK 284 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-----~~~ 284 (554)
..+..+..+.|..++.+|+..|..+..+. ...+. .....++.+.+++..||..|++.++-+..-.+ +..
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 34778888889999999999998888621 11111 34567888999999999999877766543221 111
Q ss_pred HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhc-
Q 008781 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ- 362 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~- 362 (554)
..=....++..+...+++.+..++..|+.+|+.+-..+++...+.++..++..+-..-.. ..+.. ...=+..++
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~----l~s~GewSsG 350 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKA----LYSSGEWSSG 350 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHH----HHhcCCcccC
Confidence 111223467788889999999999999999999976666666666665555433322211 11110 000011111
Q ss_pred -----------CCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc
Q 008781 363 -----------DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 363 -----------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
.++....++..|+--.++.-+.++-.+|+.+|...++.|+.+.+.
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~ 406 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG 406 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC
Confidence 111223477788888888888888899999999999999876554
No 100
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.17 E-value=0.00012 Score=78.02 Aligned_cols=284 Identities=15% Similarity=0.028 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc----CChhhHH
Q 008781 78 AAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA----VKPEHQQ 151 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~----~~~~~~~ 151 (554)
..+..|++.|..++. +.+.+- .-++|.++.++.++.. +||..|+.+|..+- .-+..-.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a------------~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEA------------DVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchH------------HHHHHHHHHHHHHHhhccCCCcccc
Confidence 466788888888887 233222 3459999999999888 99999999888766 2222333
Q ss_pred HHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 008781 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (554)
Q Consensus 152 ~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (554)
.+..+=.+|.|-.++.+.+.. .++-.-+..|..|+..-.. |.+.+.-.....++++++.+ ..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~r----Fle~~q~~~~~g~~n~~nse-------t~ 563 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAYR----FLELTQELRQAGMLNDPNSE-------TA 563 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHHH----HHHHHHHHHhcccccCcccc-------cc
Confidence 444455677777777774332 5666666677777652211 22111111222233443332 00
Q ss_pred HHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHH
Q 008781 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (554)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a 311 (554)
.... .......+.. ++-+.+..++.++++-|+...+..|.-|+.- ..+.=.+.-+++.|+..|.+.++.++..-
T Consensus 564 ~~~~--~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F---FGk~ksND~iLshLiTfLNDkDw~LR~aF 637 (1431)
T KOG1240|consen 564 PEQN--YNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVF---FGKEKSNDVILSHLITFLNDKDWRLRGAF 637 (1431)
T ss_pred cccc--cchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHhcCccHHHHHHH
Confidence 0000 1122223332 2334555778888888999888888888641 11111122378999999999988777655
Q ss_pred HHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHH
Q 008781 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (554)
Q Consensus 312 ~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (554)
...+.-++. -....-++..++|.|..-|.++++.|...|+++|..|+...--++..+ ...++.+..+|-+++.-+|
T Consensus 638 fdsI~gvsi---~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR 713 (1431)
T KOG1240|consen 638 FDSIVGVSI---FVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIR 713 (1431)
T ss_pred HhhccceEE---EEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHH
Confidence 555554431 111222456788999999999999999999999999997654443322 2356667777888899999
Q ss_pred HHHHHHHHHcccCC
Q 008781 392 HNAAFALYGLADNE 405 (554)
Q Consensus 392 ~~a~~~L~~l~~~~ 405 (554)
..++.++..++..-
T Consensus 714 ~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 714 RAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998887653
No 101
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.15 E-value=0.00026 Score=75.61 Aligned_cols=285 Identities=15% Similarity=0.097 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC----CccchHHHHhcCCHHHHH
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----NDENKNQIVECNALPTLI 255 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~~~~L~ 255 (554)
+.+..|+..|..++..-.. ...-..++|.++.++.++...||..|+.+|..+... .+.+...+.+. ++|.|-
T Consensus 438 ~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~ 513 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLN 513 (1431)
T ss_pred hhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhH
Confidence 7777888888888752221 123356889999999999999999999988887642 23334444444 788888
Q ss_pred HhhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCC
Q 008781 256 LMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (554)
Q Consensus 256 ~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 334 (554)
.++.+ ....+|..-+.+|..|+..- -.+.+.+.-.....++.+.+.+ ...+ ...+....-+...+
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse-------t~~~---~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE-------TAPE---QNYNTELQALHHTV 579 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc-------cccc---cccchHHHHHHHHH
Confidence 88887 56678888888888886431 1222211111222233433332 0000 00111111222334
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhh
Q 008781 335 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 414 (554)
Q Consensus 335 ~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 414 (554)
-+....++.++++-|+...+..|+-||..-.-++ .+.-.+..|+..|+++++.+|.+-...+..++..-..+.
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs----- 652 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS----- 652 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee-----
Confidence 4566777888888899988888888874321111 123357789999999999988765555555543321110
Q ss_pred CccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHH
Q 008781 415 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 494 (554)
Q Consensus 415 ~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L 494 (554)
.+..++|.|..-+.++++.|...|+++|..|+...-.++.. -.+.++..
T Consensus 653 ------------------------------~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~-v~~i~~~v 701 (1431)
T KOG1240|consen 653 ------------------------------VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA-VKDILQDV 701 (1431)
T ss_pred ------------------------------HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH-HHHHHHhh
Confidence 11224677777888899999999999999997665533221 11245666
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 495 LGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 495 ~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
..++.+++..+|..++..+...++.-
T Consensus 702 ~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 702 LPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred hhheeCchHHHHHHHHHHHHHHHhhh
Confidence 67788999999999999998887754
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.13 E-value=0.0024 Score=62.69 Aligned_cols=214 Identities=33% Similarity=0.401 Sum_probs=152.5
Q ss_pred CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH
Q 008781 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (554)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (554)
..++.++.++.+.+. .++..++..++.+... -+++.+..++.+.+. .++.
T Consensus 43 ~~~~~~~~~l~~~~~------------~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~--------~vr~ 92 (335)
T COG1413 43 EAADELLKLLEDEDL------------LVRLSAAVALGELGSE----------EAVPLLRELLSDEDP--------RVRD 92 (335)
T ss_pred hhHHHHHHHHcCCCH------------HHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCH--------HHHH
Confidence 467888888888755 8899999887776522 247889999988876 8999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC
Q 008781 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (554)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (554)
.++.+|+.+-. ...++.++.++. +.+..++..+.++|..+-.. ..+..++..+.+..
T Consensus 93 ~a~~aLg~~~~-----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~ 150 (335)
T COG1413 93 AAADALGELGD-----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDED 150 (335)
T ss_pred HHHHHHHccCC-----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccch
Confidence 99997777542 235678888888 58899999999999998742 23667777777655
Q ss_pred H------------HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHH
Q 008781 263 S------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (554)
Q Consensus 263 ~------------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 330 (554)
. .++..+...|+.+ +++ ..++.+...+.+....++..++.+|+.+....
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~~--~~~---------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGEL--GDP---------EAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHc--CCh---------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 2 3555555555555 111 25667788888888888888888888886432
Q ss_pred HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 008781 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 399 (554)
Q Consensus 331 ~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 399 (554)
..+.+.+...+.+++..+|..++.+|+.+-.. ..+..+...+...+..+...+...+.
T Consensus 212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 212 -VEAADLLVKALSDESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 33557777788888888888888887776432 24566777777777666655555544
No 103
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00079 Score=68.09 Aligned_cols=271 Identities=14% Similarity=0.160 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (554)
....-|+.+++|+- +-++++.+. +-+-++|.+.+... -++..++-+|..|...+|+.. ...+...
T Consensus 126 ~fv~LAL~~I~niG-~re~~ea~~-----~DI~KlLvS~~~~~------~vkqkaALclL~L~r~spDl~---~~~~W~~ 190 (938)
T KOG1077|consen 126 TFVCLALHCIANIG-SREMAEAFA-----DDIPKLLVSGSSMD------YVKQKAALCLLRLFRKSPDLV---NPGEWAQ 190 (938)
T ss_pred HHHHHHHHHHHhhc-cHhHHHHhh-----hhhHHHHhCCcchH------HHHHHHHHHHHHHHhcCcccc---ChhhHHH
Confidence 55567777777775 223444443 22336676665542 788889999999988777642 2346778
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-------------CCCHHHHHHHHHHHHHHh
Q 008781 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-------------SEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-------------~~~~~v~~~a~~~L~~L~ 277 (554)
.++.+|.+.+-.+..++...+--++..+++........ .+..|..+.. -+.|-+....++.|.+.=
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 99999999888888888888888887666544332211 2333333222 134667888888887772
Q ss_pred c-cChhhHHHHHHcCCHHHHHHHhccC--ChHHHH-----HHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHH
Q 008781 278 H-SSPNIKKEVLAAGALQPVIGLLSSC--CSESQR-----EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (554)
Q Consensus 278 ~-~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~-----~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v 349 (554)
. .++..+..+. .+++.++...+.+ ...+++ ..+.-.-+++..-+.....+ ...+..|.+++.+.+..+
T Consensus 270 ~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~Ni 345 (938)
T KOG1077|consen 270 TPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNI 345 (938)
T ss_pred CCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccc
Confidence 2 1122222222 2344444444421 112221 22222233332222222222 235678888888888899
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhh
Q 008781 350 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF 425 (554)
Q Consensus 350 ~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~ 425 (554)
|.-++..++.|+........+... .+.++..|+ ..|.+++..|+..|+.+|... |.+.+++ +.++-|....+
T Consensus 346 RYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~IV~-elLqYL~tAd~ 418 (938)
T KOG1077|consen 346 RYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQIVA-ELLQYLETADY 418 (938)
T ss_pred hhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHHHHH-HHHHHHhhcch
Confidence 999999999998875555544443 777888887 788999999999999998654 4444443 34444444333
No 104
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.001 Score=68.15 Aligned_cols=308 Identities=17% Similarity=0.132 Sum_probs=189.7
Q ss_pred HHHHHHHhccccCccccchhHHHHHHHH-HHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 008781 160 SHLVNLLKRHMDSNCSRAVNSVIRRAAD-AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (554)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~-~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 238 (554)
.-|..+|.+..+ .....|+. ++.-++. ..+.. ...|.+++...+.+.++++-.---|...+...
T Consensus 38 ~dL~~lLdSnkd--------~~KleAmKRIia~iA~-G~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq 102 (968)
T KOG1060|consen 38 DDLKQLLDSNKD--------SLKLEAMKRIIALIAK-GKDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ 102 (968)
T ss_pred HHHHHHHhcccc--------HHHHHHHHHHHHHHhc-CCcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC
Confidence 457778877665 55555555 4444454 44433 34688999999999999988777777766533
Q ss_pred ccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHH
Q 008781 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318 (554)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 318 (554)
++. .+. -+..+-+-|+++++.+|..|+++|..+= -+ ++..=.+-.+.++..+..+-+|+.|+.++-.|
T Consensus 103 pdL--ALL---SIntfQk~L~DpN~LiRasALRvlSsIR--vp-----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 103 PDL--ALL---SINTFQKALKDPNQLIRASALRVLSSIR--VP-----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred CCc--eee---eHHHHHhhhcCCcHHHHHHHHHHHHhcc--hh-----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 222 111 2778899999999999999999998872 12 22112344566777888999999999999999
Q ss_pred hcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHH
Q 008781 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (554)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (554)
-+-+++.... ++..+-.+|.+.++.+...|+.+.-.+|- ++-.++. +....+++++.+-+.--|.....+|
T Consensus 171 YsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIH-knyrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 171 YSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIH-KNYRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred hcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhh-HHHHHHHhhccchhhhhHHHHHHHH
Confidence 8777776553 35566677888999999999999888874 2333332 3466778887665554455556666
Q ss_pred HHcccCCcch----hHH-HhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHH
Q 008781 399 YGLADNEDNV----ADF-IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 473 (554)
Q Consensus 399 ~~l~~~~~~~----~~~-~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 473 (554)
...|+..-.. ... .+.|.--.+.+..--++.. +..+ --..-++...-.++.+.++.+...++++.+
T Consensus 242 ~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P--~~~d-------~D~~lLL~stkpLl~S~n~sVVmA~aql~y 312 (968)
T KOG1060|consen 242 TRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTP--YVND-------PDLKLLLQSTKPLLQSRNPSVVMAVAQLFY 312 (968)
T ss_pred HHHHHhcCCCccccccccccCcccccccccccccCCC--cccC-------ccHHHHHHhccHHHhcCCcHHHHHHHhHHH
Confidence 6655431110 011 1111111111100000000 0000 000012444456777888889999999999
Q ss_pred hhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 474 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 474 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
+++...+... .++.|+.++. .++++|......+..++..
T Consensus 313 ~lAP~~~~~~------i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 313 HLAPKNQVTK------IAKALVRLLR-SNREVQYVVLQNIATISIK 351 (968)
T ss_pred hhCCHHHHHH------HHHHHHHHHh-cCCcchhhhHHHHHHHHhc
Confidence 8887664333 3677888776 4556666655555555543
No 105
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00048 Score=69.15 Aligned_cols=215 Identities=18% Similarity=0.209 Sum_probs=147.6
Q ss_pred HHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCcc-
Q 008781 162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE- 240 (554)
Q Consensus 162 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~- 240 (554)
+..+..+.+. .++..|+..|..|..... ... ......++.+.+++..++.+|...+.......+.
T Consensus 203 l~~~~~~~D~--------~Vrt~A~eglL~L~eg~k-L~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 203 LIYLEHDQDF--------RVRTHAVEGLLALSEGFK-LSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred HHHHhcCCCc--------chHHHHHHHHHhhccccc-ccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 5555554444 667777777766665222 111 1346778888999999999998777766543321
Q ss_pred -----chHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHH--------------------------
Q 008781 241 -----NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-------------------------- 289 (554)
Q Consensus 241 -----~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-------------------------- 289 (554)
....+.+ .++..+.+.+++.+-.||..|..+|+.+-..+++.....++
T Consensus 269 ~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 269 LERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEW 347 (823)
T ss_pred ccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCc
Confidence 1112222 35777888888888889999998888775544443322222
Q ss_pred ------------------------cCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCC
Q 008781 290 ------------------------AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (554)
Q Consensus 290 ------------------------~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~ 345 (554)
.|+-..++.-+.+.-.++++.|+..++.|+...+.+... .+..|+.++.+.
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE 422 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE 422 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH
Confidence 233344455555555688999999999999777776443 478899999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 346 DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 346 ~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
...+|..|..+|..++.+-. ++...++.++..|.+.+.+++++.-..|.+.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999999999987622 3344677888888888899988877777765
No 106
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.07 E-value=0.00055 Score=69.20 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=99.4
Q ss_pred HHHHHhcCChhhHHHHHHcCChHHHHHHHhccc--cCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM--DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~--~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
.+|.-++.++...+.+....++..|.++-.-.. .......++++...|+.||.|+...++..|..+.+.|+.+.++..
T Consensus 3 ~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 3 ETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 344444555555555555555555555541111 011112233999999999999999999999999999999999999
Q ss_pred hcCC-----CHHHHHHHHHHHHHhccCCccchHHHHh-cCCHHHHHHhhcC-----------------CCHHHHHHHHHH
Q 008781 216 LEFT-----DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS-----------------EDSAIHYEAVGV 272 (554)
Q Consensus 216 l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~-----------------~~~~v~~~a~~~ 272 (554)
++.. +.++....++.|.-++......+..+++ .+++..+...+.. .+.....++++.
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9876 7889999999999998877777777665 4677777665531 133456677777
Q ss_pred HHHHhccChh
Q 008781 273 IGNLVHSSPN 282 (554)
Q Consensus 273 L~~L~~~~~~ 282 (554)
+-|+....+.
T Consensus 163 lFNit~~~~~ 172 (446)
T PF10165_consen 163 LFNITLHYPK 172 (446)
T ss_pred HHHhhhccCc
Confidence 7777655443
No 107
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0014 Score=72.03 Aligned_cols=353 Identities=16% Similarity=0.169 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCcc-chHHHHhcCCHHHHHHh
Q 008781 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILM 257 (554)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~l 257 (554)
|.-+..|+.-+..++... .-+..-.-...||.|.++=-+++..++. |+.-+++....+.. ..+... ..+++.|+.-
T Consensus 971 wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~ 1047 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDELLVN 1047 (1702)
T ss_pred hhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHHHHh
Confidence 344444555555554421 1111122234677777777788888875 44555555432322 222222 3478888888
Q ss_pred hcCCCHHHHHHHHHHHHHHhccChhhHHHHHH--cCCHHHHHHHhccCChHHHHH---HHHHHHHHhcC--Ccc--c-HH
Q 008781 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQRE---AALLLGQFAAT--DSD--C-KV 327 (554)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~~~~---a~~~L~nl~~~--~~~--~-~~ 327 (554)
+.+....||+.+|-+|..|..+.+.. .+.+ ...+..+...+.+-...+|+. ++.+|+.++.. +.. . ..
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 88999999999999999998875432 2221 134555556665545556554 45566666522 111 1 11
Q ss_pred HHHHcCCHHHHHHH-hCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc-----
Q 008781 328 HIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL----- 401 (554)
Q Consensus 328 ~~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l----- 401 (554)
.++ ..++|.|+.- +-+.-.++|..++.++..|+.+....-.-.-...++.|++....-++.+......=+.++
T Consensus 1126 ~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~eal 1204 (1702)
T KOG0915|consen 1126 EAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEAL 1204 (1702)
T ss_pred HHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHH
Confidence 111 2244444431 115567899999999999998765543333344677777777665555433222111222
Q ss_pred -------ccCCcchhHH---Hhh---Ccccccc----c---hhhhhhhhHHH---HHHHHHHHHH---HHhhchHHHHHH
Q 008781 402 -------ADNEDNVADF---IRV---GGVQKLQ----D---GEFIVQATKDC---VAKTLKRLEE---KIHGRVLNHLLY 455 (554)
Q Consensus 402 -------~~~~~~~~~~---~~~---~~i~~L~----~---~~~~~~~~~~~---~~~~~~~l~~---~~~~~~l~~L~~ 455 (554)
+.+.+-.+.+ +.. ..++.++ + +.....+-..| +.....++.. -..+..++.++.
T Consensus 1205 Dt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~ 1284 (1702)
T KOG0915|consen 1205 DTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFP 1284 (1702)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhh
Confidence 1111111100 000 0000000 0 00000000111 1111111111 136778899999
Q ss_pred HHhhCCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCcCcccccCCCCC
Q 008781 456 LMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSP 533 (554)
Q Consensus 456 ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 533 (554)
.+++.++.+++.-+.+++.|+.. ++....+++ ..+..++...++ .+..++..+.+++.+..+ .+.+-..+-
T Consensus 1285 g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es-~~siscatis~Ian~s~e--~Lkn~asaI 1357 (1702)
T KOG0915|consen 1285 GAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDES-LKSISCATISNIANYSQE--MLKNYASAI 1357 (1702)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCC-ccchhHHHHHHHHHhhHH--HHHhhHHHH
Confidence 99999999999999999999543 333333222 133344543333 235566666667766432 222222334
Q ss_pred Ccccccccccc
Q 008781 534 TPQVRFKNGFL 544 (554)
Q Consensus 534 ~~~~~l~~~~~ 544 (554)
-|.++++.+|.
T Consensus 1358 LPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1358 LPLIFLAMHEE 1368 (1702)
T ss_pred HHHHHHHHhHH
Confidence 45555555444
No 108
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.0057 Score=60.72 Aligned_cols=276 Identities=17% Similarity=0.137 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhc-C--ChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 008781 131 EVEKGSAFALGLLA-V--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~--~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (554)
.|...+++++..++ . .++.-+. .+..|-.+|+.+.. ..+..|+++|..++...|..- .-
T Consensus 279 mV~lE~Ar~v~~~~~~nv~~~~~~~-----~vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv-----~v 340 (898)
T COG5240 279 MVFLEAARAVCALSEENVGSQFVDQ-----TVSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKV-----SV 340 (898)
T ss_pred hhhHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCcee-----ee
Confidence 78888999998888 2 2333222 35677788888776 889999999999998666421 12
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
+-+-+-.++.+.+..+...|+..|..-. ++++...++.. ++.+++=+.++..-+...|++.|+.+. +.-+..
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k~~s- 412 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKTG--TEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLLF---PSKKLS- 412 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhhC---cHHHHH-
Confidence 3355666777778888887777776544 56666666543 666666666666666677777776663 332222
Q ss_pred HHcCCHHHHHHHh-ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc
Q 008781 288 LAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 288 ~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
.+..|...| +.+..+.++.+..++..+....++.+.. .+..|+.++.+.. --+-++.+|+-|.+..+.
T Consensus 413 ----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~ 481 (898)
T COG5240 413 ----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE--YHQITVRILGILGREGPR 481 (898)
T ss_pred ----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc--hhHHHHHHHHHhcccCCC
Confidence 344555554 3456788889999998888777776654 4567778887532 222445556655543322
Q ss_pred chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHh
Q 008781 367 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (554)
Q Consensus 367 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (554)
... -...+..+.+-+--.+.-+|.+|..+|..++.+.+.... .
T Consensus 482 a~~--P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~-----------------------------------~ 524 (898)
T COG5240 482 AKT--PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS-----------------------------------P 524 (898)
T ss_pred CCC--cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc-----------------------------------H
Confidence 111 011344444444445778899999999888766433110 1
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
..+...|-.++++.+.++|..|...+.++-..+.
T Consensus 525 ~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da 558 (898)
T COG5240 525 QSVENALKRCLNDQDDEVRDRASFLLRNMRLSDA 558 (898)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhh
Confidence 1123456677888999999999999999864443
No 109
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.01 E-value=0.002 Score=63.36 Aligned_cols=188 Identities=31% Similarity=0.383 Sum_probs=141.2
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (554)
..++.+..++.+.+. .++..+.+.+..+-. ...++.+..++.+.++.++..+..+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~--------~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~ 103 (335)
T COG1413 43 EAADELLKLLEDEDL--------LVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD 103 (335)
T ss_pred hhHHHHHHHHcCCCH--------HHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Confidence 357788888888744 788888888555432 3467899999999999999999998887753
Q ss_pred CCccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCCh----------
Q 008781 237 KNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS---------- 305 (554)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---------- 305 (554)
...++.++..+. +++..+|..+.++|+.+- ++. .+..++..+.+...
T Consensus 104 -----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--~~~---------a~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 104 -----------PEAVPPLVELLENDENEGVRAAAARALGKLG--DER---------ALDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred -----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--chh---------hhHHHHHHhccchhhhhhhhccch
Confidence 235788888888 689999999999999983 222 36667777776542
Q ss_pred --HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh
Q 008781 306 --ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 383 (554)
Q Consensus 306 --~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll 383 (554)
.++..++..|+.+- +...++.+...+.+.+..+|..+..+|+.+.... ..+...+...+
T Consensus 162 ~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~ 222 (335)
T COG1413 162 LLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKAL 222 (335)
T ss_pred HHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHh
Confidence 24444555555442 2335788889999988899999999999997654 23556788888
Q ss_pred cCCChhHHHHHHHHHHHcccC
Q 008781 384 DSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 384 ~~~~~~v~~~a~~~L~~l~~~ 404 (554)
.+.+..++..++.+|..+-..
T Consensus 223 ~~~~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 223 SDESLEVRKAALLALGEIGDE 243 (335)
T ss_pred cCCCHHHHHHHHHHhcccCcc
Confidence 999999999999998887543
No 110
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.97 E-value=1.3e-05 Score=51.05 Aligned_cols=41 Identities=39% Similarity=0.621 Sum_probs=37.7
Q ss_pred CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
+++++..+++.|+++.|+.+|++++++++..|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35778899999999999999999999999999999999973
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.95 E-value=1.9e-05 Score=50.18 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=37.1
Q ss_pred chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 479 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
++++..+++.|+++.|+.++.++++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4577889999999999999999999999999999999974
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.93 E-value=4.9e-05 Score=70.11 Aligned_cols=184 Identities=18% Similarity=0.150 Sum_probs=118.5
Q ss_pred ccCChHHHHHHHHHHHHHhcCC--cccHHHHHH--cCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCH
Q 008781 301 SSCCSESQREAALLLGQFAATD--SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 376 (554)
Q Consensus 301 ~~~~~~~~~~a~~~L~nl~~~~--~~~~~~~~~--~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l 376 (554)
.+.+++.+..++.-|..+..+. ......+.. ..++..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999988665 222222222 256677777788777889999999999998755444333344578
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008781 377 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 456 (554)
Q Consensus 377 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~l 456 (554)
+.|++.+.+++..++..|..+|..++.+......+ +.+.+...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------------------------------------~~~~l~~~ 139 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------------------------------------LLEILSQG 139 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------------------------------------HHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------------------------------------HHHHHHHH
Confidence 88999999989999999999999998765411111 14556667
Q ss_pred HhhCCHHHHHHHHHHHHhhcCCch-----hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 457 MRVAEKGVQRRVALALAHLCSPDD-----QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 457 l~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+.+.++.+|..++..+..+..... ......-...++.+...+.+++++||..|-.++..+..+-+
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 788999999999999999854422 11111113467788899999999999999999999987654
No 113
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.92 E-value=0.0041 Score=62.78 Aligned_cols=360 Identities=20% Similarity=0.160 Sum_probs=196.1
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (554)
+|.|+..|.+.+... ..-.+.++.+|+.+|.++..-+.+.- ..+..+....+..... +....+
T Consensus 1 ~p~ll~~Lpd~~~~~---------~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~-------~~~~~i 63 (415)
T PF12460_consen 1 LPALLALLPDSDSST---------DSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSS-------DYCHAI 63 (415)
T ss_pred CchHHhhCCCCCCcc---------hhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCCh-------HHHHHH
Confidence 366777776655421 14566899999999977766555443 3344444444332211 677778
Q ss_pred HHHHHHHhhcCchhH-----HHHHhcCChHHHHHhhcC-----C--CHHHHHHHHHHHHHhccCCcc-chHHHHhcCCHH
Q 008781 186 ADAITNLAHENSSIK-----TRVRMEGGIPPLVELLEF-----T--DTKVQRAAAGALRTLAFKNDE-NKNQIVECNALP 252 (554)
Q Consensus 186 ~~~L~~L~~~~~~~~-----~~~~~~~~i~~L~~ll~~-----~--~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~ 252 (554)
+.+|.++........ ....+...++.++++... . ++.+...+...+..+...-+. .++.+. .
T Consensus 64 l~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~ 138 (415)
T PF12460_consen 64 LSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----D 138 (415)
T ss_pred HHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----H
Confidence 888888775443322 223333467777776632 1 245666666666666554333 333332 2
Q ss_pred HHHHhhc----------CC------CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC-ChHHHHHHHHHH
Q 008781 253 TLILMLR----------SE------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLL 315 (554)
Q Consensus 253 ~L~~ll~----------~~------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~a~~~L 315 (554)
.+..++. .. ......-...++..+ .++..-. -....+..++.+..+. ++..+..++.++
T Consensus 139 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l---~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 139 ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSL---RKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcC---CcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3333222 11 111222222333333 2222111 1122667777776544 467778888888
Q ss_pred HHHhcCCcccHHHHHHcCCHHHHHHHh-CCCCH----HHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhH
Q 008781 316 GQFAATDSDCKVHIVQRGAVRPLIEML-QSPDV----QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 390 (554)
Q Consensus 316 ~nl~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~----~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 390 (554)
+.+....+... .. ..++..+...+ ...+. ...+...|....+....+. .....+..|+.++.+ +++
T Consensus 215 a~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~----~~~~~~~~L~~lL~~--~~~ 285 (415)
T PF12460_consen 215 ASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP----LATELLDKLLELLSS--PEL 285 (415)
T ss_pred HHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHhCC--hhh
Confidence 88874421111 11 12333333333 22222 3344444555555432211 112245667777766 677
Q ss_pred HHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHH
Q 008781 391 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 470 (554)
Q Consensus 391 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 470 (554)
...++.++.-+..+.+..-.-..+..+..|.+ ..+=..++|.|+...+..+...+..-+.
T Consensus 286 g~~aA~~f~il~~d~~~~l~~~~~a~vklLyk--------------------QR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 286 GQQAAKAFGILLSDSDDVLNKENHANVKLLYK--------------------QRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHhhHhcCcHHhcCccccchhhhHHh--------------------HHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 88888888888776322111111122222221 1112234677777777777778899999
Q ss_pred HHHhhcCCchhhH-HHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 471 ALAHLCSPDDQRT-IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 471 ~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+|.++..+-.... .-.-...+|.|++-+..++++++..+..+|..+..+.
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999976543221 1122346888999999999999999999999999875
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.91 E-value=0.00014 Score=67.05 Aligned_cols=183 Identities=17% Similarity=0.139 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHHHHhhcC--chhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHH
Q 008781 178 VNSVIRRAADAITNLAHEN--SSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (554)
Q Consensus 178 ~~~~~~~a~~~L~~L~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 253 (554)
+|+.+..++.-|..++.++ ......+.. ...+..+...+.+....+...|+.++..++..-........ ..+++.
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l~~ 98 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILLPP 98 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHH
Confidence 4799999999999998866 222222211 24556777777777778999999999999864333333333 347899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCc---cc-HHHH
Q 008781 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS---DC-KVHI 329 (554)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~---~~-~~~~ 329 (554)
|++.+.+....++..|..+|..++...+.. ..+ .+..+...+.+.++.++..++..+..+....+ .. ....
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 999999999999999999999998764411 111 15567777888999999999999988875444 11 1111
Q ss_pred HHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc
Q 008781 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 330 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
.-..+.+.+...+.++++++|..|-.++..+....+.
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1245778888999999999999999999999764433
No 115
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0018 Score=66.69 Aligned_cols=348 Identities=14% Similarity=0.095 Sum_probs=210.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 008781 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (554)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (554)
...-++++.+..+.+. .+..+.+++.....+- ++.+.+---+.|.+...|... .+.+..++
T Consensus 32 ~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dl--------elKKlvyLYl~nYa~~~P~~a-----~~avnt~~ 92 (734)
T KOG1061|consen 32 DAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDL--------ELKKLVYLYLMNYAKGKPDLA-----ILAVNTFL 92 (734)
T ss_pred HHHHHHHhcCccCcch------HhhhHHHHhhcccCCc--------hHHHHHHHHHHHhhccCchHH-----Hhhhhhhh
Confidence 3444566666633333 1334556666655544 888888888888888666532 34677888
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCH
Q 008781 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (554)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (554)
.=..++++.++..|++.+..+.. +. +.+ .+...+.+.+++.++.+|..+.-+..++-..+ .+.....|++
T Consensus 93 kD~~d~np~iR~lAlrtm~~l~v--~~----i~e-y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~ 162 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCLRV--DK----ITE-YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLV 162 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeEee--hH----HHH-HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchh
Confidence 88888999999988887776653 11 222 24678899999999999999999999884332 3667778999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhc
Q 008781 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 373 (554)
Q Consensus 294 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~ 373 (554)
+.|..++.+.++.+...|..+|..+...+++.....+....+..++..+..-+..-+.. .|.+++....... .-..
T Consensus 163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~---IL~~l~~y~p~d~-~ea~ 238 (734)
T KOG1061|consen 163 DALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF---ILDCLAEYVPKDS-REAE 238 (734)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH---HHHHHHhcCCCCc-hhHH
Confidence 99999999999999999999999998655442221222223344444444333333333 3344443322211 1112
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhc--hHH
Q 008781 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR--VLN 451 (554)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~l~ 451 (554)
..+..+...+.+.++.+...+...+.++...........-....++|+....... ...++ +++++..++... ++.
T Consensus 239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyv--aLrNi~lil~~~p~~~~ 315 (734)
T KOG1061|consen 239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYV--ALRNINLILQKRPEILK 315 (734)
T ss_pred HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHH--HHhhHHHHHHhChHHHH
Confidence 2455666667777777878888887777665444443333334444433222222 11111 222322222111 111
Q ss_pred HHHHHH--hh-CCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCcC
Q 008781 452 HLLYLM--RV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 523 (554)
Q Consensus 452 ~L~~ll--~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 523 (554)
.-+..+ +- +...++..=+.++..++......+ .+.-|..+...-+.+..+.+.+++.+++...+..
T Consensus 316 ~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e~~ 384 (734)
T KOG1061|consen 316 VEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS 384 (734)
T ss_pred hHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh
Confidence 111111 22 234677777888888876655333 3566667777777888888999999988765433
No 116
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.89 E-value=0.002 Score=59.15 Aligned_cols=227 Identities=17% Similarity=0.148 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHh-CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVE-GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (554)
+.-.+.-|+.+|.++.-.++.|..+.. ..+-..++.+++..-. +..+|.+++.++..+..++++.+.+-
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg----------~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG----------VKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 444677888999999998888887654 4466677788876543 23899999999999998888875444
Q ss_pred Hc-CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc-hhHHHHHhcCChHHHHHhh-cC--CCHHHHHHHHH
Q 008781 155 DN-GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELL-EF--TDTKVQRAAAG 229 (554)
Q Consensus 155 ~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~i~~L~~ll-~~--~~~~v~~~a~~ 229 (554)
+. ..+..++.+.+....+ .+.+.++.++.|++...+ ..-....-.|-+..-++.| +. .|++++...-.
T Consensus 232 K~~dli~dli~iVk~~~ke-------KV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~ 304 (432)
T COG5231 232 KMDDLINDLIAIVKERAKE-------KVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIER 304 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHH
Confidence 32 4567777777766554 889999999999997332 2222222234333444444 32 34444322211
Q ss_pred HHH-----------------HhccC----Cc---------cchHHHHh--cCCHHHHHHhhcCCCHH-HHHHHHHHHHHH
Q 008781 230 ALR-----------------TLAFK----ND---------ENKNQIVE--CNALPTLILMLRSEDSA-IHYEAVGVIGNL 276 (554)
Q Consensus 230 ~L~-----------------~l~~~----~~---------~~~~~~~~--~~~~~~L~~ll~~~~~~-v~~~a~~~L~~L 276 (554)
.=. .+-++ +| .|.+.+.+ ..++..|.++++..++. ...-|+.-+..+
T Consensus 305 i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~ 384 (432)
T COG5231 305 IRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQL 384 (432)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHH
Confidence 111 11000 11 23334433 24577788888866554 556677778888
Q ss_pred hccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHh
Q 008781 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (554)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 319 (554)
....|+...-+...|+=..++.++.+++++++-+|..++..+.
T Consensus 385 Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 385 VRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 8888988788888899999999999999999999999887664
No 117
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.036 Score=59.45 Aligned_cols=257 Identities=18% Similarity=0.185 Sum_probs=159.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCC-hHHHHHHHHHHHHHhcCCcccHH
Q 008781 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKV 327 (554)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~~~~a~~~L~nl~~~~~~~~~ 327 (554)
++++.|+..+++.+..||-.|+.-++.++...|-. ....++..++.++.-.+ +.....++.+|+.++...--.-.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 57888889999999999999999999998766621 22235666666655443 56677888999999854322111
Q ss_pred HHHHcCCHHHHHHHhC--------CCCHHHHHHHHHHHHHHhcCCCcc--hhhhhcCCHHHHHHHhcCCChhHHHHHHHH
Q 008781 328 HIVQRGAVRPLIEMLQ--------SPDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 397 (554)
Q Consensus 328 ~~~~~~~~~~L~~~l~--------~~~~~v~~~a~~~L~~L~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 397 (554)
.+ ..++|.++..+. +....+|.+|+.+++.+++..... +.+...=.-..|...+-+.+..+|.+|..+
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 11 235677766664 223569999999999998754322 222221112224455567788899999988
Q ss_pred HHHcccCCcchhHHHhhCccccccc-hhhhhhhhHHHHHHHHHHHHHH--HhhchHHHHHHH-HhhCCHHHHHHHHHHHH
Q 008781 398 LYGLADNEDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYL-MRVAEKGVQRRVALALA 473 (554)
Q Consensus 398 L~~l~~~~~~~~~~~~~~~i~~L~~-~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~ 473 (554)
+.....-..+.. .|++.+.. +.+.+..-..|.......++.. ....++.+|+.. +.+=++.++..++++|.
T Consensus 495 lqE~VGR~~n~p-----~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 495 LQENVGRQGNFP-----HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHhccCCCCC-----CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 877655433321 23333322 2233333344444333333332 233445555554 45568899999999999
Q ss_pred hhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 474 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 474 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
+|..... .....+.+++|+....+.+...+.-+..+...+...
T Consensus 570 ~Ls~~~p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 570 KLSLTEP---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHhhH---HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 9865432 234556789999998888888877665555555543
No 118
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.86 E-value=6.9e-05 Score=57.53 Aligned_cols=68 Identities=28% Similarity=0.311 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhccCCccchHHHHhc
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 248 (554)
++...+.+|+|+|..++.++..+.+.|+++.++..+. ..+|.++++|+.++++++.++++++..+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999999999999999999999999875 4578999999999999999999998887653
No 119
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.028 Score=57.43 Aligned_cols=285 Identities=16% Similarity=0.195 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 257 (554)
.....|+.+++|+-. .+.+..+. +-+-++|.++ .+.+++.++-||..+-..+++.. -..+..+.++++
T Consensus 126 ~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~L 195 (938)
T KOG1077|consen 126 TFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHL 195 (938)
T ss_pred HHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHH
Confidence 777888999999864 23333332 2333666554 34688888888888876555432 223567889999
Q ss_pred hcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc-------------CChHHHHHHHHHHHHHhcC-Cc
Q 008781 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-------------CCSESQREAALLLGQFAAT-DS 323 (554)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-------------~~~~~~~~a~~~L~nl~~~-~~ 323 (554)
|.+.+-.|...+...+-.|+..+++.....+ ...+..|..+... +.|=++...++.|.++-.. ++
T Consensus 196 L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~-~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~ 274 (938)
T KOG1077|consen 196 LDDQHMGVVTAATSLIEALVKKNPESYKTCL-PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDP 274 (938)
T ss_pred hCccccceeeehHHHHHHHHHcCCHHHhhhH-HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCc
Confidence 9998888888888888888876655322111 0122222222211 1223344555555555211 11
Q ss_pred ccHHHHHHcCCHHHHHHHhCCC----C---HHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHH
Q 008781 324 DCKVHIVQRGAVRPLIEMLQSP----D---VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 396 (554)
Q Consensus 324 ~~~~~~~~~~~~~~L~~~l~~~----~---~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 396 (554)
..+..+ ..++..++...+.+ + ...+.+.+.-..+|+.+-+....+.. ..+..|..++.+....+|.-++.
T Consensus 275 ~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fls~rE~NiRYLaLE 351 (938)
T KOG1077|consen 275 STRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFLSHRETNIRYLALE 351 (938)
T ss_pred hHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhhcccccchhhhHH
Confidence 111111 12223333222211 1 11222333333444433332222221 23444555555555555555555
Q ss_pred HHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHh-hCCHHHHHHHHHHHHhh
Q 008781 397 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHL 475 (554)
Q Consensus 397 ~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l 475 (554)
.++.|+........+.. . .+.++..|+ ..|..++..|+..|..+
T Consensus 352 sm~~L~ss~~s~davK~----------------------------------h-~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 352 SMCKLASSEFSIDAVKK----------------------------------H-QDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HHHHHHhccchHHHHHH----------------------------------H-HHHHHHHhccccchHHHHHHHHHHHHH
Confidence 55555544332222211 1 466777887 68999999999999999
Q ss_pred cCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 476 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
|.-+....+ +..|++++.+.+..+|++-..-.+-|+++
T Consensus 397 cD~~Nak~I------V~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 397 CDVSNAKQI------VAELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred hchhhHHHH------HHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 987766554 57788888889999998887777777764
No 120
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.77 E-value=0.00013 Score=56.12 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh
Q 008781 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (554)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 205 (554)
+...+++|+|++ .++.+++.+.+.|+++.+++...-+...+ -++++|++++.|||.++++++..+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP------~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNP------FIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccH------HHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 557889999999 99999999999999999998876544332 89999999999999999999988765
No 121
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.065 Score=59.66 Aligned_cols=414 Identities=17% Similarity=0.144 Sum_probs=204.4
Q ss_pred HHHHHHHHHHhccC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCC-hhhHHHHHHc
Q 008781 80 AKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK-PEHQQLIVDN 156 (554)
Q Consensus 80 ~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~i~~~ 156 (554)
+.-|+..+..++.. ++....+ ...||.|.++=.+++. .|+.....+-..|..+ ....+... .
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l--~kLIPrLyRY~yDP~~------------~Vq~aM~sIW~~Li~D~k~~vd~y~-n 1038 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYL--KKLIPRLYRYQYDPDK------------KVQDAMTSIWNALITDSKKVVDEYL-N 1038 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHH--HHhhHHHhhhccCCcH------------HHHHHHHHHHHHhccChHHHHHHHH-H
Confidence 34667777777652 2222222 2357777777666665 7886555555556544 33333322 2
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHH---HHHHHH
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAA---AGALRT 233 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a---~~~L~~ 233 (554)
.+++.|+.-|.+. -|.+|+.+|-+|..|..+.+..+..=.-......+++.+.+-.+.+|.+| +.+|..
T Consensus 1039 eIl~eLL~~lt~k--------ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1039 EILDELLVNLTSK--------EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred HHHHHHHHhccch--------hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333 25999999999999998655322211112334455555555555666654 444554
Q ss_pred hccC-----CccchHHHHhcCCHHHHHH--hhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChH
Q 008781 234 LAFK-----NDENKNQIVECNALPTLIL--MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE 306 (554)
Q Consensus 234 l~~~-----~~~~~~~~~~~~~~~~L~~--ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 306 (554)
++-. +....+.+++ .++|.|+. .+ +.-+++|..++.++..|+.+..... ...-..+++.|+.....-.+.
T Consensus 1111 l~vr~~d~~~~~~~~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~l-kP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1111 LCVRICDVTNGAKGKEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKEL-KPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred HHhhhcccCCcccHHHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhh-cchhhHHHHHHHHHccccchH
Confidence 4421 1111222222 24555553 33 6678999999999999987655421 111234566666665544443
Q ss_pred HHH-----------HHHHHHHH-HhcCCc------ccHHH---HHHcCCHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCC
Q 008781 307 SQR-----------EAALLLGQ-FAATDS------DCKVH---IVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 307 ~~~-----------~a~~~L~n-l~~~~~------~~~~~---~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~~L~~~~ 364 (554)
+.. ++...+.. .+..++ .|... -+-..++|.+.++++++ .-..+..++..+..|+..-
T Consensus 1188 vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~ 1267 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL 1267 (1702)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh
Confidence 321 22222211 111111 01110 01124567777777642 3344555666666665321
Q ss_pred CcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC--CcchhHHHhhCccccccchhhhhhhhHHHHHH--HHHH
Q 008781 365 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAK--TLKR 440 (554)
Q Consensus 365 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~--~~~~ 440 (554)
..-..-.....+..++..+.+.++.++...+.+.+.++.. ++....+++.-. ..+........ ...|-.. ..+.
T Consensus 1268 ~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l-~~~l~k~es~~-siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1268 GSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL-ADLLGKDESLK-SISCATISNIANY 1345 (1702)
T ss_pred ccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhccCCCcc-chhHHHHHHHHHh
Confidence 1111111122345556666778899999999999888654 323333333211 11111011111 2333221 1222
Q ss_pred HHHHH---hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHH-HhhCCCChhHHHHHHHHHHHH
Q 008781 441 LEEKI---HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL-GLLGSTNPKQQLDGAVALFKL 516 (554)
Q Consensus 441 l~~~~---~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~L~~L 516 (554)
..+.+ ...++|.+.--++..+.+.+..=-.....+..+...+..+.....+-.+. ...++..-.++..++.++..+
T Consensus 1346 s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~ 1425 (1702)
T KOG0915|consen 1346 SQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVI 1425 (1702)
T ss_pred hHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 22222 23344443333333333333333334455555555444334444444333 444455567888899988888
Q ss_pred HhhcC
Q 008781 517 ANKAT 521 (554)
Q Consensus 517 ~~~~~ 521 (554)
+....
T Consensus 1426 a~~~s 1430 (1702)
T KOG0915|consen 1426 AEGLS 1430 (1702)
T ss_pred ccccc
Confidence 87544
No 122
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.68 E-value=0.04 Score=55.70 Aligned_cols=338 Identities=18% Similarity=0.132 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChh-----hHH
Q 008781 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-----HQQ 151 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-----~~~ 151 (554)
......+.+|..+|.++.....+.. ..+..|-..++.... .+.....+.+|.++. ...+ ...
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~-----------~~~~~~il~tl~~~~~~~~~~~~~~~~~ 84 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS-----------SDYCHAILSTLQSLLEKKQEDKQFEDNS 84 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHHHHhcccccccchHH
Confidence 4556788899999988776666543 445555555543332 155667777777776 2211 122
Q ss_pred HHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc----------CC--
Q 008781 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------FT-- 219 (554)
Q Consensus 152 ~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~----------~~-- 219 (554)
...+...++.+.++.......... .+..+...+..++..++..-+..+..-. +..+..+.- ..
T Consensus 85 ~y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~ 159 (415)
T PF12460_consen 85 WYFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSST 159 (415)
T ss_pred HHHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccc
Confidence 333444788888777654332221 1226666667777766654443332211 333333332 00
Q ss_pred ----CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 220 ----DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 220 ----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
......-...++..+-... ... .....+..++.+.. ..++..+..++++++.++-.-+.. . . -...+.
T Consensus 160 ~~~~~~~~~~l~~~il~~l~~~~-~~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~-~-l~~~l~ 232 (415)
T PF12460_consen 160 ISEQQSRLVILFSAILCSLRKDV-SLP---DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-D-D-LDEFLD 232 (415)
T ss_pred cccccccHHHHHHHHHHcCCccc-Ccc---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-h-h-HHHHHH
Confidence 1112222223333332211 100 11125667776654 456889999999999887542111 1 1 112333
Q ss_pred HHHHHh-ccCChHHHHHHH----HHHHHHhc-CCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC-C--
Q 008781 295 PVIGLL-SSCCSESQREAA----LLLGQFAA-TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-H-- 365 (554)
Q Consensus 295 ~L~~lL-~~~~~~~~~~a~----~~L~nl~~-~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~-~-- 365 (554)
.+..-+ .......+..+. |+...+.. +++.. ..++..|+.++.+ +.+...++.++.-+..+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~------~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l 304 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA------TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVL 304 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH------HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhc
Confidence 333333 223333444444 43333332 22221 2245667777776 567778888888887662 1
Q ss_pred ------cchhhhhcC----CHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHH
Q 008781 366 ------NQAGIAHNG----GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 435 (554)
Q Consensus 366 ------~~~~l~~~~----~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~ 435 (554)
+-+.++... .+|.|++-.+..+...+...+.+|.++..+-+.. .+..
T Consensus 305 ~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~-vl~~---------------------- 361 (415)
T PF12460_consen 305 NKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS-VLLP---------------------- 361 (415)
T ss_pred CccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH-HHHH----------------------
Confidence 112344443 3556666666666668888888999887765421 1111
Q ss_pred HHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCc
Q 008781 436 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 479 (554)
Q Consensus 436 ~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 479 (554)
--..++|.|+..+..+++.++..++.+|..+....
T Consensus 362 ---------~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 362 ---------ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred ---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 01225788889999999999999999999997665
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.67 E-value=0.00033 Score=53.47 Aligned_cols=86 Identities=28% Similarity=0.314 Sum_probs=68.4
Q ss_pred HHHHHHHh-cCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHH
Q 008781 376 LVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL 454 (554)
Q Consensus 376 l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~ 454 (554)
|+.|++.+ +++++.++..++.+|+.+-. ..+++.|+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------------------------------------------~~~~~~L~ 37 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-------------------------------------------PEAIPALI 37 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-------------------------------------------HHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------------------------------------------HhHHHHHH
Confidence 57788888 88899999999999995421 12478889
Q ss_pred HHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCC-ChhHHHHHHHHHH
Q 008781 455 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALF 514 (554)
Q Consensus 455 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~ 514 (554)
.+++++++.+|..|+++|+.+- ....++.|.+++.++ +..+|..|..+|.
T Consensus 38 ~~l~d~~~~vr~~a~~aL~~i~----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 38 ELLKDEDPMVRRAAARALGRIG----------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHHCCH----------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 9999999999999999999972 344788999988865 4566888888874
No 124
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.67 E-value=0.00016 Score=55.23 Aligned_cols=86 Identities=34% Similarity=0.438 Sum_probs=68.8
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 209 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 209 i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
++.|++.+ +++++.++..++.+|+.+-. ..+++.|+.++.++++.+|..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 88899999999999995532 135899999999999999999999999882
Q ss_pred HHcCCHHHHHHHhccCC-hHHHHHHHHHHH
Q 008781 288 LAAGALQPVIGLLSSCC-SESQREAALLLG 316 (554)
Q Consensus 288 ~~~~~l~~L~~lL~~~~-~~~~~~a~~~L~ 316 (554)
....++.|..++.+++ ..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1237889999998765 456888888774
No 125
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.66 E-value=0.0027 Score=58.35 Aligned_cols=259 Identities=12% Similarity=0.126 Sum_probs=153.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhccChhhHHHH-HHcCCHHHHHHHhccC--ChHHHHHHHHHHHHHhcCCcccHHHHHH-
Q 008781 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV-LAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQ- 331 (554)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~- 331 (554)
++++.-++-.|..|++|+.++... ++.+... .+...-..++.++++. ...++...+.++.-++ .++.+...+-.
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqdi~K~ 233 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 444445666889999999999776 4444443 3444566788888764 3578888999999886 44555433322
Q ss_pred cCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCC--CcchhhhhcCCHHHHHHHhcC---CChhHHHHHHHHHHHcccCC
Q 008781 332 RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM--HNQAGIAHNGGLVPLLKLLDS---KNGSLQHNAAFALYGLADNE 405 (554)
Q Consensus 332 ~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~--~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~ 405 (554)
.+.+..++.+++. ....+-+-++.++.|++... +.-..+.-.|-+.+-++.|.. .+.+++...-.+-..+..+.
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 3566777777774 34567888899999998632 112233334434444444432 34454443333222222222
Q ss_pred cchhHHHhhCccccccchhh---hhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHH-HHHHHHHHHHhhc-CCch
Q 008781 406 DNVADFIRVGGVQKLQDGEF---IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLC-SPDD 480 (554)
Q Consensus 406 ~~~~~~~~~~~i~~L~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~-v~~~a~~~L~~l~-~~~~ 480 (554)
.....+ ...+..|-++.+ ......+-+...+..+. +-...++..|..++...++. .-.-|+.-++.+. ..|+
T Consensus 314 k~l~~f--D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~-kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 314 KKLCIF--DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLI-KDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhHH--HHHHHHHhhCcccCCCcccccCchhhhHHHHh-hhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 111111 011111111111 01112222333222221 12455788899999887666 3344566666664 4577
Q ss_pred hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 481 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 481 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
....+.+-|+-+.+.+++++++++|+.+|..++.-+...
T Consensus 391 ~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 888899999999999999999999999999999877654
No 126
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.63 E-value=0.0068 Score=53.74 Aligned_cols=183 Identities=12% Similarity=0.131 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHHc
Q 008781 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (554)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~ 156 (554)
-...|+..|..++++|+.+..+.+..+--.|-.+|...+.+. || .-+|..++..++.+. ++.+.-..+...
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r------~f-EyLRLtsLGVIgaLvk~dd~eVi~fLl~T 167 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSR------PF-EYLRLTSLGVIGALVKNDDQEVIRFLLTT 167 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCC------ch-HHHhHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 466788888888999999999999999999999998776532 22 268999999999999 666677777888
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHH------HHHh-cCCh-HHHHHhhcCCCHHHHHHHH
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVRM-EGGI-PPLVELLEFTDTKVQRAAA 228 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~------~~~~-~~~i-~~L~~ll~~~~~~v~~~a~ 228 (554)
+++|..++.+...+. ..+..|+.++..+..++....- .|.. .-.+ ..+.++.+.+++.+..+++
T Consensus 168 eIVPlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhvi 239 (293)
T KOG3036|consen 168 EIVPLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVI 239 (293)
T ss_pred hhHHHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999998876 7777888888887765543211 1111 1122 3344555678899999999
Q ss_pred HHHHHhccCCccchHHHHhc---CCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008781 229 GALRTLAFKNDENKNQIVEC---NALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 229 ~~L~~l~~~~~~~~~~~~~~---~~~~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (554)
++..+++. ++..+..+... +.-+.-...+-.+|+..+.+-...+.|++
T Consensus 240 RcYlrLsd-nprar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 240 RCYLRLSD-NPRARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHHhcC-CHHHHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 99999996 67666655432 11111122222455666666666666664
No 127
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0096 Score=53.54 Aligned_cols=212 Identities=21% Similarity=0.270 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (554)
.++...+.+|+...+ ...++.++..|.+.+... -++..|..+|.++.. ....+
T Consensus 51 llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~p------mvRhEAaealga~~~-----------~~~~~ 103 (289)
T KOG0567|consen 51 LLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEP------MVRHEAAEALGAIGD-----------PESLE 103 (289)
T ss_pred hhccchhhhhhhhcc----------chhhHHHHHHhcccccch------HHHHHHHHHHHhhcc-----------hhhHH
Confidence 344455566665552 234666666666655432 556667777766541 12234
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCccch----HHH--------HhcCCHHHHHHhhcCCC--HHHHHHHHHHHHHH
Q 008781 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENK----NQI--------VECNALPTLILMLRSED--SAIHYEAVGVIGNL 276 (554)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~--------~~~~~~~~L~~ll~~~~--~~v~~~a~~~L~~L 276 (554)
.+-++.+++-..++..+..++..+-..+.-.. ... ...+-+..+-..+.+.. .--|+.+...|.|+
T Consensus 104 ~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~ 183 (289)
T KOG0567|consen 104 ILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI 183 (289)
T ss_pred HHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc
Confidence 44444444545555555555554432111000 000 11122444444333322 22355666666666
Q ss_pred hccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC--CCHHHHHHHH
Q 008781 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSA 354 (554)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~ 354 (554)
+.++ .+..++.-+..++.-.+.+++.+++.+-+ +. .++.|.+.|.+ ..+-+|..|+
T Consensus 184 --g~Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaA 241 (289)
T KOG0567|consen 184 --GTEE---------AINALIDGLADDSALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAA 241 (289)
T ss_pred --CcHH---------HHHHHHHhcccchHHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHH
Confidence 2232 34456666666677788899999998842 22 46777777764 5778999999
Q ss_pred HHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 355 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 355 ~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
.+|+.++.. ..++.|.+.+.+.++-|++.|..+|.-+
T Consensus 242 eALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 242 EALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999988752 3566777888887787887777776544
No 128
>PRK14707 hypothetical protein; Provisional
Probab=97.61 E-value=0.11 Score=59.85 Aligned_cols=411 Identities=18% Similarity=0.156 Sum_probs=215.8
Q ss_pred HHHHHHHHH-HHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHH-HhcCChhhHHHHHHc
Q 008781 79 AAKRATHVL-AELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDN 156 (554)
Q Consensus 79 ~~~~a~~~L-~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~-~l~~~~~~~~~i~~~ 156 (554)
+...|+..| ..+..+++.+..+-..++-..|-.+-+.++. .+...++..|. .++++++.+..+-..
T Consensus 306 vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~------------~~C~~Aa~~LA~rl~~d~~l~~~l~~q 373 (2710)
T PRK14707 306 VCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDN------------PVCAAAVSALAERLVADPELRKDLEPQ 373 (2710)
T ss_pred HHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHHhccCHhhhcccchh
Confidence 444444444 4456677777665555544444444444444 44445555554 555888777666544
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (554)
| +..+++-++.-... ..-..++..|..=..++++.+..+...|.-..|-.+.+-++..+...+...|..-..
T Consensus 374 ~-~a~~lNalsKWp~~-------~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la 445 (2710)
T PRK14707 374 G-VSSVLNALSKWPDT-------PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLA 445 (2710)
T ss_pred H-HHHHHhhhhcCCCc-------hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHh
Confidence 4 55556666554332 666777777766666788888887777777777777788888888888888887776
Q ss_pred CCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHH-HHHHHHH
Q 008781 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-REAALLL 315 (554)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~-~~a~~~L 315 (554)
++.+.++.+--.++...|--+-+=++..+...++..|..=.....+.++.+--.++...|-.+-+-++.... ..+.+.-
T Consensus 446 ~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA 525 (2710)
T PRK14707 446 HDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALA 525 (2710)
T ss_pred ccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 666666665444433333333344566666666666655444455555555444444444444444443333 3334444
Q ss_pred HHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcC--CChhHHHH
Q 008781 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS--KNGSLQHN 393 (554)
Q Consensus 316 ~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~ 393 (554)
+.+. ........+-..++...+-.+-+.++....+.+...|..+.........-.....+..+++.++. ++...+..
T Consensus 526 ~rl~-~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~A 604 (2710)
T PRK14707 526 ERVV-DELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEA 604 (2710)
T ss_pred HHhc-cchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHH
Confidence 4443 22222222233333333444444566666666666666654433333333444556667777643 33455555
Q ss_pred HHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHH----------HHHHhhchHHHHHHHH-hhCCH
Q 008781 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL----------EEKIHGRVLNHLLYLM-RVAEK 462 (554)
Q Consensus 394 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~l~~L~~ll-~~~~~ 462 (554)
+.+.-..+...+.-+..+ ..-.+..++++..++.....|- .....+ ...+...-+.-++.-+ +-++.
T Consensus 605 a~~LA~~l~~~~~lr~~l-~~q~lan~lNALSKWP~s~~C~-~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~ 682 (2710)
T PRK14707 605 VNALAERLVDEPDLRKEL-DPVDVTNVLNALSKWPGTEVCA-EVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDT 682 (2710)
T ss_pred HHHHHHHhccChhhhhhc-cHHHHHHHHhhhhcCCCchHHH-HHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCc
Confidence 555555555544433332 2233445555555555555552 212111 1122333344444444 33555
Q ss_pred HHHHHHHHHHH-hhcCCchhhHHHHHcCcHHHHHHhhCC-CChhHHHHHHHHH
Q 008781 463 GVQRRVALALA-HLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVAL 513 (554)
Q Consensus 463 ~v~~~a~~~L~-~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L 513 (554)
+....++..|. .|...+..+.. .+..++...++-++. ++......|+..|
T Consensus 683 e~Cr~Aa~~LA~rLa~~~~Lr~a-l~pQ~vAN~LNALSKWP~~~~Cr~AA~~L 734 (2710)
T PRK14707 683 PVCAAAAGGMAERLAADPGLRKE-LNPVDVANALNALSKWPRTPVCAAVASAL 734 (2710)
T ss_pred hHHHHHHHHHHHHHhcChhhHhh-cCHHHHHHHHhhhhcCCCcHHHHHHHHHH
Confidence 55555555544 34444444443 233344455555542 3333333343333
No 129
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.018 Score=51.82 Aligned_cols=226 Identities=19% Similarity=0.222 Sum_probs=140.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
+..+.+...+++....-..+.+|..... ...++.++..+.+ ..+-||..|..+|+++- .+.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---- 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---- 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh----
Confidence 3344444444433444455555655543 4578999988875 46788999999999985 222
Q ss_pred HHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccH----HHH--------HHcCCHHHHHHHhCC-CCH-HHHHH
Q 008781 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHI--------VQRGAVRPLIEMLQS-PDV-QLREM 352 (554)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~----~~~--------~~~~~~~~L~~~l~~-~~~-~v~~~ 352 (554)
.++.+-+..+++..++++.+..++..+-..+.-.. ... ...+-+..+-..+.+ ..+ .-|..
T Consensus 101 -----~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 101 -----SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred -----hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 45556666667777788777777776642111000 000 011113333333332 222 23445
Q ss_pred HHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHH
Q 008781 353 SAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 432 (554)
Q Consensus 353 a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~ 432 (554)
+...|.|+.. ...|..+.+-+..++.-.|..++++++.|-...
T Consensus 176 amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~--------------------------- 218 (289)
T KOG0567|consen 176 AMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA--------------------------- 218 (289)
T ss_pred hhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh---------------------------
Confidence 5555555522 123556666677778888999999998874332
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHhh--CCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHH
Q 008781 433 CVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGA 510 (554)
Q Consensus 433 ~~~~~~~~l~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 510 (554)
.++.|...|.. .+|-+|.+|+.+|+.++.. ..++.|.+++.++.+-+++.+.
T Consensus 219 ----------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~ 272 (289)
T KOG0567|consen 219 ----------------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCE 272 (289)
T ss_pred ----------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHH
Confidence 15666666644 6889999999999997643 4578899999999999999888
Q ss_pred HHHHHHHhh
Q 008781 511 VALFKLANK 519 (554)
Q Consensus 511 ~~L~~L~~~ 519 (554)
.+|-.+...
T Consensus 273 valdm~eye 281 (289)
T KOG0567|consen 273 VALDMLEYE 281 (289)
T ss_pred HHHHHHHHh
Confidence 888766553
No 130
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.18 Score=53.41 Aligned_cols=160 Identities=9% Similarity=0.082 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (554)
.-....=+++..+..+++.. ...+.+++.....+. ++++.+-.-|.+.+..+|.... + .+.
T Consensus 35 ~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~--------ElKrL~ylYl~~yak~~P~~~l-L----avN 95 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDV--------ELKRLLYLYLERYAKLKPELAL-L----AVN 95 (757)
T ss_pred HHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCH--------HHHHHHHHHHHHHhccCHHHHH-H----HHH
Confidence 34444556677777444432 124556666654443 8888888888888886663222 1 467
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHc
Q 008781 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (554)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (554)
.+.+=++++++.+|..|++++..+=. + .+.. .+++.+.+.+.++++.||+.|+-++..+-.-++ ....+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~--~----el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV--K----ELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh--H----HHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcc
Confidence 88888899999999999998887753 1 2222 357889999999999999999999999965443 455667
Q ss_pred CCHHHHHHHhccCChHHHHHHHHHHHHHh
Q 008781 291 GALQPVIGLLSSCCSESQREAALLLGQFA 319 (554)
Q Consensus 291 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 319 (554)
|.+..+..++.+.++.+..+|..+|..+.
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 88999999999999999999999999985
No 131
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.056 Score=56.06 Aligned_cols=270 Identities=13% Similarity=0.101 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
.+...+++++.++. ..+.. +. ..+..|--+++.+.. .++..|.++|..++..+|..- .-+-
T Consensus 260 mV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~--------~lRfaAvRtLnkvAm~~P~~v-----~~cN 321 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKV--------ALRFAAVRTLNKVAMKHPQAV-----TVCN 321 (865)
T ss_pred HHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHhCCccc-----cccc
Confidence 56666666666665 22111 11 145555555655555 666777777777776555421 1122
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (554)
.-|-.++.+.+..+...|...|..-. ++.+...+++. +..++.=+.++..-+...|+++|++.. +.- .
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~f---p~k-----~ 389 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTG--TESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKF---PRK-----H 389 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhc--chhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhc---cHH-----H
Confidence 34444555555555555555554433 34555555443 445555555555555666666665552 221 1
Q ss_pred cCCHHHHHHHhcc-CChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcch
Q 008781 290 AGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (554)
Q Consensus 290 ~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~ 368 (554)
.+.+..|..+|++ +..+.++....++..+....++.+.. ++..|+.++.+. +...-+...|.-|..... .
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~EgP--~ 460 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKEGP--K 460 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhccCC--C
Confidence 2355667777754 34567777777777776555555432 456666666643 333455566666654322 1
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhc
Q 008781 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (554)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (554)
.......+..+.+...-.+..++.+|..+|.++....+.. ...
T Consensus 461 a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-------------------------------------~~s 503 (865)
T KOG1078|consen 461 APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-------------------------------------LPS 503 (865)
T ss_pred CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-------------------------------------ccc
Confidence 2223345666666666678889999999999987332211 111
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhc
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLC 476 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (554)
+...|..++.+.+.++|..|...+.++-
T Consensus 504 I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 504 ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3456667788899999999999998886
No 132
>PRK14707 hypothetical protein; Provisional
Probab=97.44 E-value=0.13 Score=59.19 Aligned_cols=413 Identities=17% Similarity=0.148 Sum_probs=205.4
Q ss_pred HHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhh-cCCCCCccccCCCcchHHHHHHHHHHHH
Q 008781 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHL-QAPPTSEADRNLKPFEHEVEKGSAFALG 141 (554)
Q Consensus 63 v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (554)
+.+|...++.+.++..-+..+...-..++.++..+..+-..| |..++.-+ +.++. ++.+..+...-.
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q~-ia~~lNa~sKWp~~-----------~~c~~aa~~la~ 232 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQG-VATVLNALCKWPDT-----------PDCGNAVSALAE 232 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccchHH-HHHHHHHHhcCCCC-----------hhHHHHHHHHHH
Confidence 444444444444344334344444444556666666664444 44444444 33333 255544444444
Q ss_pred HhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCH
Q 008781 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (554)
Q Consensus 142 ~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 221 (554)
.+++++..+..+-. ..+-..++.|+...+. ..-..++..|..=...++..+..+...+.-..|-.+.+-++.
T Consensus 233 ~l~~~~~l~~~~~~-q~va~~lN~lsKwp~~-------~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~ 304 (2710)
T PRK14707 233 RLADESRLRNELKP-QELGNALNALSKWADT-------PVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADL 304 (2710)
T ss_pred HHcCcHHHHHhCCh-HHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCc
Confidence 55566555444433 3455555666554432 455555555544333466666655544555555566666777
Q ss_pred HHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 008781 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (554)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (554)
.+...+...|..=..++++..+.+--. .+...++.|+ =++..+...+...|..-...++..++.+--.|+-..|-.+-
T Consensus 305 ~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNals 383 (2710)
T PRK14707 305 PVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALS 383 (2710)
T ss_pred hHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhh
Confidence 766666666665554455555444333 3444455444 45666666666666655455566666555444444444444
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHH-HhcCCCcchhhhhcCCHHHH
Q 008781 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAGIAHNGGLVPL 379 (554)
Q Consensus 301 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~-L~~~~~~~~~l~~~~~l~~L 379 (554)
+-++..+...++..|..=...+.+.+..+--.|+-..|-.+-+=++..+...++..|.- ++.+.+-+..+--.+ +...
T Consensus 384 KWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~ 462 (2710)
T PRK14707 384 KWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQA 462 (2710)
T ss_pred cCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHH
Confidence 45677777777777766555666666655555554444444444777777777777765 444444444333222 3333
Q ss_pred HHHhc-CCChh-HHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHH---------HHHHHHhhc
Q 008781 380 LKLLD-SKNGS-LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK---------RLEEKIHGR 448 (554)
Q Consensus 380 ~~ll~-~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~ 448 (554)
++.++ =++.. ....+-.....|+...+-++.|--. .+..-++...++.....|.....- .+...+...
T Consensus 463 LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q-~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~ 541 (2710)
T PRK14707 463 LDALSKWPDTPICGQTASALAARLAHERRLRKALKPQ-EVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAH 541 (2710)
T ss_pred HHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHH-HHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhH
Confidence 44332 23433 3344444444555544432222111 121222333333333344322111 111112222
Q ss_pred hHHHHHH-HHhhCCHHHHHHHHHHHHhhcCCch-hhHHHHHcCcHHHHHHhhC
Q 008781 449 VLNHLLY-LMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLG 499 (554)
Q Consensus 449 ~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~ 499 (554)
-+..++. +.+.++....+.++..|..++..+. .+.. .+...+..+++.++
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~Vs~llNaLS 593 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQGVVIVLNALS 593 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhHHHHHHHhhc
Confidence 2233333 3344555666666666666644433 3333 34555666776666
No 133
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.43 E-value=0.00037 Score=47.64 Aligned_cols=55 Identities=25% Similarity=0.113 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHH
Q 008781 462 KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (554)
Q Consensus 462 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 516 (554)
+.+|..|+++|++++........-.....++.|..++.++++.||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999987766444446667899999999999999999999999875
No 134
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.35 E-value=0.048 Score=52.59 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=148.4
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchH-----HHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 008781 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN-----QIVECNALPTLILMLR-SEDSAIHYEAVGVIGNL 276 (554)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-----~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L 276 (554)
+...+.+..|+..|..-+-+.+..+..+..++.......+. .+... .-+.+..++. .+++++...+...|...
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 44567888999999888999999999999999875444322 23322 1222223333 34566777777788877
Q ss_pred hccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHc---CCHHHHHHHhCCCCHHHHHHH
Q 008781 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMS 353 (554)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~---~~~~~L~~~l~~~~~~v~~~a 353 (554)
+.. +...+.++....+..+...++.++-++...|..++..+...........+.. .++..+..++.+++.-++..+
T Consensus 151 ~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 151 IKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred Hhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 665 6667888888899999999999999999999999999776655554445543 456677788889999999999
Q ss_pred HHHHHHHhcCCCcchh----hhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhH
Q 008781 354 AFALGRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 410 (554)
Q Consensus 354 ~~~L~~L~~~~~~~~~----l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (554)
+..|+.+..+..+... +.+...+..++.+|.+++..+|..|-.++.-+..++..-..
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~ 290 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPP 290 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChH
Confidence 9999999988877543 33445688899999999999999999999988877654443
No 135
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.33 E-value=0.003 Score=57.13 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHH
Q 008781 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIV 154 (554)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~ 154 (554)
+.-...|+..|..++++|+.+..+.++.+.-.|-.+|+..+... ||+ .+|..++.++|.+. ++++.-..+.
T Consensus 64 snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r------~~E-~LRLtsLGVIgaLvK~d~~evi~fLl 136 (262)
T PF04078_consen 64 SNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTR------PFE-YLRLTSLGVIGALVKTDDPEVISFLL 136 (262)
T ss_dssp HHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SH------HHH-HHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhcccccc------ccc-hhhHhHHHHHHHHHcCCcHHHHHHHH
Confidence 34567778888888999999999999999999999998876531 222 68999999999999 6778888888
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhH-------HHHHhcCChHHHH-HhhcCCCHHHHHH
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-------TRVRMEGGIPPLV-ELLEFTDTKVQRA 226 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~-------~~~~~~~~i~~L~-~ll~~~~~~v~~~ 226 (554)
..+++|..++.+...+. -.+..|..++..+..++.... ....-...+..++ .+.+.+++.+.++
T Consensus 137 ~tEiiplcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKh 208 (262)
T PF04078_consen 137 QTEIIPLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKH 208 (262)
T ss_dssp CTTHHHHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHH
T ss_pred hhchHHHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence 99999999999987654 566678888888776443211 1111122333333 3556788999999
Q ss_pred HHHHHHHhccCCccchHHHHhcCCHHHHHH-----hhcCCCHHHHHHHHHHHHHH
Q 008781 227 AAGALRTLAFKNDENKNQIVECNALPTLIL-----MLRSEDSAIHYEAVGVIGNL 276 (554)
Q Consensus 227 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-----ll~~~~~~v~~~a~~~L~~L 276 (554)
.++|...++. ++..+..+... +|..++ -+-.+|+.++.+-...+.|+
T Consensus 209 IIrCYlRLsd-nprar~aL~~~--LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 209 IIRCYLRLSD-NPRAREALRQC--LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHHHTT-STTHHHHHHHH--S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHcc-CHHHHHHHHHh--CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999997 77777776642 332211 11134777887777777776
No 136
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.33 E-value=0.00021 Score=48.92 Aligned_cols=55 Identities=33% Similarity=0.375 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 347 VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 347 ~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
+.+|..|+++|++++........-....+++.|..++.++++.|+..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999887665554456667899999999999999999999999875
No 137
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.093 Score=56.49 Aligned_cols=257 Identities=21% Similarity=0.218 Sum_probs=149.3
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHH
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (554)
.++++.|+..|++.+. .|+..|++.++.++ ..|- .....++..++.++....++ ..
T Consensus 340 E~vie~Lls~l~d~dt------------~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~-------~a 396 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDT------------VVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDD-------SA 396 (1133)
T ss_pred HHHHHHHHHhccCCcc------------hhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCch-------hH
Confidence 3567788888887777 89999999999999 5551 12223456666655544432 67
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHhccCCccc-hHHHHhcCCHH
Q 008781 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--------TDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALP 252 (554)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~ 252 (554)
.+.++-+|..++...--.-..+ ..++|.++.-|.- ....+|.+||..++.++...... .+-+... +..
T Consensus 397 WHgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s 473 (1133)
T KOG1943|consen 397 WHGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LAS 473 (1133)
T ss_pred HHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHH
Confidence 7799999999986332211111 2355666665542 23578999998888887643322 1112211 222
Q ss_pred H-HHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCCh---HHHHHHHHHHHHHhcCCcccHHH
Q 008781 253 T-LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS---ESQREAALLLGQFAATDSDCKVH 328 (554)
Q Consensus 253 ~-L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~~~~~a~~~L~nl~~~~~~~~~~ 328 (554)
. |...+-+.+-.+|+.|..++-.......+ .|.=+.++..-+. ..+..+-..+..-....+..+..
T Consensus 474 ~LL~~AlFDrevncRRAAsAAlqE~VGR~~n----------~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~ 543 (1133)
T KOG1943|consen 474 ALLIVALFDREVNCRRAASAALQENVGRQGN----------FPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREP 543 (1133)
T ss_pred HHHHHHhcCchhhHhHHHHHHHHHHhccCCC----------CCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHH
Confidence 2 33455678888999999888766532111 1111112211111 11222222222211122222222
Q ss_pred HHHcCCHHHHHHH-hCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHccc
Q 008781 329 IVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (554)
Q Consensus 329 ~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (554)
+ +..++.. +..-+..+|+.++++|.+|+.. ..+......+++++....+.+...+..+..+.+.+..
T Consensus 544 ~-----f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~---~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 544 V-----FNHLLTKKVCHWDVKIRELAAYALHKLSLT---EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred H-----HHHHHhcccccccHHHHHHHHHHHHHHHHh---hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 2 2222222 3456889999999999998753 3345566789999999988888888777666666543
No 138
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.034 Score=58.17 Aligned_cols=339 Identities=15% Similarity=0.173 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH------h
Q 008781 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR------M 205 (554)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~------~ 205 (554)
+.-.+++.|+.|+....+...++..|++..|+..-+-. +.....-.+|+.+.. ....-+.++ .
T Consensus 369 l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s----------~~~~g~s~cly~~~~-~q~~mervc~~p~~v~ 437 (1516)
T KOG1832|consen 369 LLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS----------ETFYGLSSCLYTIGS-LQGIMERVCALPLVVI 437 (1516)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch----------hhhhhHHHHHHHHhh-hhhHHHHHhhccHHHH
Confidence 34456677777776667888899999988887665543 333344455655554 332322222 2
Q ss_pred cCChHHHHHhhcCCC------HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC--------CC---------
Q 008781 206 EGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------ED--------- 262 (554)
Q Consensus 206 ~~~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--------~~--------- 262 (554)
...+..-+.++.... ..+-..++..++.+.. .+-..+.+..|+.++++ .+
T Consensus 438 ~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~-------~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ 510 (1516)
T KOG1832|consen 438 HQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILD-------AFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMIS 510 (1516)
T ss_pred HHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhh
Confidence 234445555665432 2333444444444332 22233445555555542 11
Q ss_pred --HHHHHHHHHHHHHHh-----ccChhhHHHHHHcCCHHHHHHHhccCC------hHHHHHHHHHHHHHhcCCc------
Q 008781 263 --SAIHYEAVGVIGNLV-----HSSPNIKKEVLAAGALQPVIGLLSSCC------SESQREAALLLGQFAATDS------ 323 (554)
Q Consensus 263 --~~v~~~a~~~L~~L~-----~~~~~~~~~~~~~~~l~~L~~lL~~~~------~~~~~~a~~~L~nl~~~~~------ 323 (554)
...-...|.+|.... -.-+..++.-++.+.....+.-+.... .+..++.+|-+-.+....+
T Consensus 511 ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~ 590 (1516)
T KOG1832|consen 511 SSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQ 590 (1516)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhc
Confidence 122333444443322 122333444445555555555443322 2233445554444433222
Q ss_pred -ccHHHHHHcCCHHHHHHHhCC--------CCHHHHHHHHHHHHHHhcCCCcchhhhhc--------CCHHHHHHHhc--
Q 008781 324 -DCKVHIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQAGIAHN--------GGLVPLLKLLD-- 384 (554)
Q Consensus 324 -~~~~~~~~~~~~~~L~~~l~~--------~~~~v~~~a~~~L~~L~~~~~~~~~l~~~--------~~l~~L~~ll~-- 384 (554)
.....+...+++..++.+..- +..++...|+.+|+-+..-+..+..+... .++..++....
T Consensus 591 w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 591 WPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred chHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 122345667888888887762 23457778888888887777766654331 13444444331
Q ss_pred --CCChhHHHHHHHHHHHcccCC-cchhHHHhhCccccccchhhhhhhhH-HHHHHHHHHH-HHHHhhchHHHHHHHHhh
Q 008781 385 --SKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATK-DCVAKTLKRL-EEKIHGRVLNHLLYLMRV 459 (554)
Q Consensus 385 --~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~l~~L~~ll~~ 459 (554)
-.+++++..|+.++.|+...+ +++...+..-+-+.=-...+..+.++ ..+...+.+. +.+..++.+..|+.++..
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~ 750 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQY 750 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Confidence 137899999999999996654 56554332210000000001111111 1222333333 234567789999999986
Q ss_pred CC-----HHHHHHHHHHHHhhcCCchhhHHHHHc
Q 008781 460 AE-----KGVQRRVALALAHLCSPDDQRTIFIDG 488 (554)
Q Consensus 460 ~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~ 488 (554)
.. ..+|..|+++|.-|+..++.++++-+.
T Consensus 751 k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 751 KNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred cCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 44 368999999999999999988876654
No 139
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.27 E-value=0.0078 Score=50.36 Aligned_cols=134 Identities=13% Similarity=0.211 Sum_probs=103.3
Q ss_pred HHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCcccc
Q 008781 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (554)
Q Consensus 97 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~ 176 (554)
...+++.|++..|++++..+.. ..|+...+...++.++..|-+.....-......++..++.++.....+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~------~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~--- 74 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTE------IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDA--- 74 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCc------cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccc---
Confidence 4568889999999999998764 1222337778889999888843333334556667888888888655322
Q ss_pred chhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccch
Q 008781 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242 (554)
Q Consensus 177 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 242 (554)
.+...|+.+|-++...++.....+...--++.|+..|+.+++.++..++..+..+....++.+
T Consensus 75 ---~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 75 ---SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred ---hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 899999999999999777767777777788999999999999999999998888876555443
No 140
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.26 E-value=0.013 Score=57.83 Aligned_cols=202 Identities=15% Similarity=0.197 Sum_probs=134.7
Q ss_pred HHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCC---------C-ccccC------------CCcchHHHHHHHHH
Q 008781 82 RATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPT---------S-EADRN------------LKPFEHEVEKGSAF 138 (554)
Q Consensus 82 ~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~---------~-~~~~~------------~~~~~~~v~~~a~~ 138 (554)
.|++.|-.+.. .+.....+...|++..++..|+..-. . ..+.. .++.-..+....++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 34555555555 45666677888888888877642110 0 00000 11112344455566
Q ss_pred HHHHhcC-ChhhHHH---HHH-cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 008781 139 ALGLLAV-KPEHQQL---IVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (554)
Q Consensus 139 ~L~~l~~-~~~~~~~---i~~-~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (554)
.+..+.. ++...+. +++ ...+..|..++++...-.. .+...|+.++..+.+..|..-..+.+.|.++.++
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~-----~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGP-----SVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccch-----HHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 6666655 4444333 344 4456666667766543221 8889999999999998998888899999999999
Q ss_pred Hhhc-C---CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCH-------HHHHHHHHHHHHHhccChh
Q 008781 214 ELLE-F---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-------AIHYEAVGVIGNLVHSSPN 282 (554)
Q Consensus 214 ~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-------~v~~~a~~~L~~L~~~~~~ 282 (554)
+.+. . ++.++....-.+|..+|- +....+.+.+.+.++.+++++.+++- +.-...-..+-.|.++.+.
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 9887 3 456777777788888887 78889999999999999999876431 3334444566667778888
Q ss_pred hHHHHHH
Q 008781 283 IKKEVLA 289 (554)
Q Consensus 283 ~~~~~~~ 289 (554)
.+..+++
T Consensus 237 Lk~~i~~ 243 (379)
T PF06025_consen 237 LKPDIID 243 (379)
T ss_pred HHHHHHH
Confidence 7766654
No 141
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=97.23 E-value=0.036 Score=54.58 Aligned_cols=290 Identities=16% Similarity=0.143 Sum_probs=156.9
Q ss_pred hhhhhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchH
Q 008781 51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (554)
Q Consensus 51 ~~~~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~ 130 (554)
+++.+...|.-+++-+... .....+..++-.|+.-+.++.++..+...|.+..+++.+..... ++
T Consensus 15 en~rf~Dev~ylld~l~~~-----~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~----------d~ 79 (361)
T PF07814_consen 15 ENQRFADEVEYLLDGLESS-----SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPD----------DD 79 (361)
T ss_pred hhhhHHHHHHHHHhhcccC-----CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccc----------hH
Confidence 4455666677776666522 24457888888888888899999999999999999999966554 11
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhcccc-Cccccch---hHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD-SNCSRAV---NSVIRRAADAITNLAHENSSIKTRVRME 206 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~-~~~~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 206 (554)
..-..++.++.-++.+...-..+.+.+.+..+++++.-... +.....+ ..-.......+...|.. .. ..
T Consensus 80 ~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~------~~-~~ 152 (361)
T PF07814_consen 80 ILALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKE------LL-SS 152 (361)
T ss_pred HHHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHH------HH-hc
Confidence 33334455555555554444555566667777888872111 0000000 00111111111111110 00 00
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhc--------------cCCccchHHHHhcCCHHHHHHhhcC----C-------
Q 008781 207 GGIPPLVELLEFTDTKVQRAAAGALRTLA--------------FKNDENKNQIVECNALPTLILMLRS----E------- 261 (554)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~~~~L~~ll~~----~------- 261 (554)
+.. ..--......-+..|+.++-.++ ...+..++.+...|+++.++..+.+ .
T Consensus 153 ~~~---~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~ 229 (361)
T PF07814_consen 153 GSS---WKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWD 229 (361)
T ss_pred ccc---ccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 000 00000111122333333333331 1123457778888899999988751 1
Q ss_pred -----CHHHHHHHHHHHHHHhccChhhHHHHHHc--CCHH-HHHHHhccC---ChHHHHHHHHHHHHHhcCCcccHHHHH
Q 008781 262 -----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQ-PVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIV 330 (554)
Q Consensus 262 -----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~l~-~L~~lL~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~ 330 (554)
+......++++|-+.+..++.++.++... +.+. .+..++... .......++.++.|++..++.....+.
T Consensus 230 ~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~ 309 (361)
T PF07814_consen 230 DPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA 309 (361)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh
Confidence 11345667888888887777776766653 2333 333333332 234456788899999877766555555
Q ss_pred HcCCHHHHHHHh-------C-------CCCHHHHHHHHHHHHHHhcCCC
Q 008781 331 QRGAVRPLIEML-------Q-------SPDVQLREMSAFALGRLAQDMH 365 (554)
Q Consensus 331 ~~~~~~~L~~~l-------~-------~~~~~v~~~a~~~L~~L~~~~~ 365 (554)
..++...+..+. . ....++..-++++|.||+.+.+
T Consensus 310 s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 310 SPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred hhHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence 443332221111 1 1234567788888899887543
No 142
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.039 Score=54.15 Aligned_cols=254 Identities=17% Similarity=0.079 Sum_probs=132.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCC
Q 008781 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (554)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 334 (554)
.-..+++..++..|++.|+|.++.-|.-....... .+..++. +..+.+.+|..++..+|..+...-... -+...+
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~---~l~~~~ 340 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND---DLESYL 340 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc---chhhhc
Confidence 33447788999999999999998755433333322 3444444 445556889999998888776221111 122223
Q ss_pred ---HHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC--cchhhhh--cCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc
Q 008781 335 ---VRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 335 ---~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~--~~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
.-.+..+..+.++++|.++...++.|+.... .+..+.+ .+...+++-.+.+.++.+..+ |......+...-.
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A-Cr~~~~~c~p~l~ 419 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA-CRSELRTCYPNLV 419 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH-HHHHHHhcCchhH
Confidence 3345566778899999999999999986443 3333442 234445555566677776544 4444333322111
Q ss_pred hhHHHhhCccccccchhh-hhhh--hHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chhh
Q 008781 408 VADFIRVGGVQKLQDGEF-IVQA--TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQR 482 (554)
Q Consensus 408 ~~~~~~~~~i~~L~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 482 (554)
+++. .+.++...+... ..+. -..|+. ++.+..-+-.-.......++++.-+.++..+...-.++... +..+
T Consensus 420 rke~--~~~~q~~ld~~~~~~q~Fyn~~c~~--L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c 495 (533)
T KOG2032|consen 420 RKEL--YHLFQESLDTDMARFQAFYNQWCIQ--LNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAAC 495 (533)
T ss_pred HHHH--HHHHhhhhHHhHHHHHHHHHHHHHH--HhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1111 122222212111 0110 011111 11110000001112222233344456666666555555322 2222
Q ss_pred HHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 483 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 483 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
...--......|..+...+.++++..|..++..+..
T Consensus 496 ~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 496 SSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 222222235567777789999999999999987765
No 143
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.021 Score=55.72 Aligned_cols=305 Identities=17% Similarity=0.168 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC-----CccchHHHHhcCCHHHH
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPTL 254 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~~~~L 254 (554)
.++-.|..+|..++.+..-.+..+.+ ....+...+...++.++.++..++..+... .|+..+.-...+.+-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 66667777777776543333332221 223333444567889999999998887642 22222221212212211
Q ss_pred HH------hhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCC----hHHHHHHHHHHHHHhcCCc
Q 008781 255 IL------MLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDS 323 (554)
Q Consensus 255 ~~------ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~ 323 (554)
+- ..- +..+.....++-++.++....... ...|--.....++..++ .-++.+|.+.+.-+.-...
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~ 423 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC 423 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence 11 011 223445666777777774321100 00111111222232222 2244455555554433322
Q ss_pred ccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc----CCCcchhhh---hcCCHHHHHHHh---cCCChhHHHH
Q 008781 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ----DMHNQAGIA---HNGGLVPLLKLL---DSKNGSLQHN 393 (554)
Q Consensus 324 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~----~~~~~~~l~---~~~~l~~L~~ll---~~~~~~v~~~ 393 (554)
.......-.+....+...+.+..-..|..+.|+++|++. +-++-.... ..-.+..++... ...+..|+.+
T Consensus 424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~n 503 (728)
T KOG4535|consen 424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSN 503 (728)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 222222334455666667777777899999999999973 112211111 111122222222 2235678888
Q ss_pred HHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHH-HHhhCCHHHHHHHHHHH
Q 008781 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALAL 472 (554)
Q Consensus 394 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L 472 (554)
+..+|.|+..--+... +.+. .++.+.. +..++. -.-.....||=++|.++
T Consensus 504 avraLgnllQvlq~i~---~~~~-------------------------~e~~~~~-~~~l~~~v~~~~~~kV~WNaCya~ 554 (728)
T KOG4535|consen 504 AVRALGNLLQFLQPIE---KPTF-------------------------AEIIEES-IQALISTVLTEAAMKVRWNACYAM 554 (728)
T ss_pred HHHHHhhHHHHHHHhh---hccH-------------------------HHHHHHH-HHhcccceecccccccchHHHHHH
Confidence 8888888754221100 0000 0001111 111111 11235678999999999
Q ss_pred HhhcCCchh--hHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHHHHHhh
Q 008781 473 AHLCSPDDQ--RTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 473 ~~l~~~~~~--~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~ 519 (554)
+||..++.. +..-......+.|..++. ..|-.+|..|+.+|..-...
T Consensus 555 gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 555 GNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 999777653 211222334677777776 57788999999988765543
No 144
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.19 E-value=0.014 Score=48.86 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=94.9
Q ss_pred HHHHHHcCCHHHHHHHhCCCC------HHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCC--ChhHHHHHHHH
Q 008781 326 KVHIVQRGAVRPLIEMLQSPD------VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFA 397 (554)
Q Consensus 326 ~~~~~~~~~~~~L~~~l~~~~------~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~ 397 (554)
...+...+++..|++++.++. ..+...++.++..|..+....-......++..+....+.+ +..+...++..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 345778899999999999755 3677888999999988765555667777888888888654 58899999999
Q ss_pred HHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhc
Q 008781 398 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (554)
Q Consensus 398 L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (554)
|.++..+.+..-..+..+. .++.|+..+..++++++.++...+-.|.
T Consensus 84 LEs~Vl~S~~ly~~V~~ev--------------------------------t~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEV--------------------------------TLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccC--------------------------------CHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999988776555555432 2789999999999999999999998883
No 145
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.18 E-value=0.62 Score=52.35 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=86.9
Q ss_pred CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhH-HHHHHcCChHHHHHHHhccccCccccchhHH
Q 008781 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (554)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~-~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (554)
+.+..++..|..+.. .+|..|++||..+. .+|... ...++. .+-.-+.+... .+
T Consensus 816 ~yLk~Il~~l~e~~i------------alRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~Dssa--------sV 871 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAI------------ALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSSA--------SV 871 (1692)
T ss_pred HHHHHHHHHhcCchH------------HHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccchh--------HH
Confidence 457777888886666 99999999999999 665432 111222 22222333333 78
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC
Q 008781 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (554)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 261 (554)
++.|+..++......++.-.++. ..+..-+.++...||..+++.++.+|...|..... . .+...++.-..++
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-~--~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-V--DMCAKMLRRVNDE 943 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-H--HHHHHHHHHhccc
Confidence 88888888877665555444333 35566666777788888888888888755544221 1 1122233333344
Q ss_pred CHHHHHHHHHHHHHHhc
Q 008781 262 DSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~ 278 (554)
+..++..+..++.++..
T Consensus 944 Eg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 944 EGNIKKLVRETFLKLWF 960 (1692)
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 44577777777666654
No 146
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.17 E-value=0.0011 Score=41.99 Aligned_cols=39 Identities=33% Similarity=0.483 Sum_probs=35.3
Q ss_pred hhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 480 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 480 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
+.+..+.+.|+++.|+.++.+++++++..++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 366778899999999999999999999999999999863
No 147
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.14 E-value=0.074 Score=51.30 Aligned_cols=203 Identities=13% Similarity=0.150 Sum_probs=140.5
Q ss_pred HHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHH----HHHHcCChHHHHHHHhccccCc
Q 008781 99 WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ----LIVDNGALSHLVNLLKRHMDSN 173 (554)
Q Consensus 99 ~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~----~i~~~g~l~~L~~lL~~~~~~~ 173 (554)
.+...|.+..|+..|..-+- +.+..+..+..++- ...+.+. ..+....-..+..++......
T Consensus 71 Ei~~~dll~~Li~~L~~L~f------------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~- 137 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDF------------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP- 137 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-H------------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST-
T ss_pred HHHHhCHHHHHHHHhhhCCC------------cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc-
Confidence 45567889999998876655 89999999999988 3332221 112222223333334433332
Q ss_pred cccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhc---CC
Q 008781 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC---NA 250 (554)
Q Consensus 174 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~ 250 (554)
++.-.+...|...+. .+.....+.....+..+.+.+..++-++...|..++..+...+......+... .+
T Consensus 138 ------dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~f 210 (335)
T PF08569_consen 138 ------DIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRF 210 (335)
T ss_dssp ------TTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHH
T ss_pred ------cccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 666677777777666 67667777778888999999999999999999999999876555544444433 34
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccChhh---HHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcC
Q 008781 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (554)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~ 321 (554)
+.....++.+++--+++.++..|+.|..+.... .+++.+..-+..++.+|++.+..++.+|..++--+.+.
T Consensus 211 f~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 211 FQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 566778899999999999999999997653332 24444567889999999999999999999988777654
No 148
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.13 E-value=0.0012 Score=41.87 Aligned_cols=39 Identities=38% Similarity=0.609 Sum_probs=35.5
Q ss_pred ccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008781 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (554)
++++..+.+.|+++.|+.++.+++++++..++++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999996
No 149
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.14 Score=54.16 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (554)
-+...=.+|..+..+++ ... ..+.+++...+.|.++++-.---|.+.+..+| ...+. +++.+.+=+.+
T Consensus 36 kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d 103 (757)
T COG5096 36 KIDAMKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQD 103 (757)
T ss_pred HHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccC
Confidence 33444456677776444 322 34667777778889999888888888876554 22333 37888888999
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHH
Q 008781 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~ 340 (554)
+++.+|..|+++++.+ ..++.. ..+++++.+++.++++.||+.|+.++.++-.-+++ .+.+.|.+..+..
T Consensus 104 ~N~~iR~~AlR~ls~l--~~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~ 173 (757)
T COG5096 104 PNEEIRGFALRTLSLL--RVKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKE 173 (757)
T ss_pred CCHHHHHHHHHHHHhc--ChHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHH
Confidence 9999999999999988 222221 23678999999999999999999999999754433 4667788889999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhcC
Q 008781 341 MLQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 341 ~l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
++.+.+|.+..+|+.+|..+...
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999998543
No 150
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.06 E-value=0.095 Score=56.31 Aligned_cols=234 Identities=17% Similarity=0.199 Sum_probs=144.6
Q ss_pred HHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccc
Q 008781 98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRA 177 (554)
Q Consensus 98 ~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~ 177 (554)
..+.+.|++..|+++|.+-..-.+ ...+....+.+|...+.-+.+|+.+++.|+++.|+..+...-.......
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~-------~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~ 183 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSR-------GRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSS 183 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccC-------cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccc
Confidence 356679999999999987443111 2267777888888888889999999999999999998864222111001
Q ss_pred hhHHHHHHHHHHHHHhhcCchhHH----HHH--------hcCChHHHHHhhcC----CCHHHHHHHHHHHHHhccCCccc
Q 008781 178 VNSVIRRAADAITNLAHENSSIKT----RVR--------MEGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDEN 241 (554)
Q Consensus 178 ~~~~~~~a~~~L~~L~~~~~~~~~----~~~--------~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~ 241 (554)
..++.+..+.++-.+..+...... ... ....+..|++.+.+ .++.+....+++|-.++.++++.
T Consensus 184 ~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~ 263 (802)
T PF13764_consen 184 QAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK 263 (802)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH
Confidence 116666666666666542211100 001 11226667776665 36789999999999999988777
Q ss_pred hHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhccC------hhhHHHHHHcCCHHHHHHHhccCChH-------
Q 008781 242 KNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSCCSE------- 306 (554)
Q Consensus 242 ~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~------- 306 (554)
.+.+++. +...+++=. .....--...+.+++.++.+- ...+..+++.|++...+..|...-+.
T Consensus 264 m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~ 341 (802)
T PF13764_consen 264 MDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSP 341 (802)
T ss_pred HHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCH
Confidence 7666654 333333211 111111123366667776532 34678889999999888887543221
Q ss_pred -H--------HHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHH
Q 008781 307 -S--------QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (554)
Q Consensus 307 -~--------~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~ 341 (554)
- ...++..|.-++.++...+.. ...++++.+..+
T Consensus 342 eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~L 384 (802)
T PF13764_consen 342 EWKEFLSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRL 384 (802)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHh
Confidence 1 235667788888776666554 455566554443
No 151
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.074 Score=54.82 Aligned_cols=159 Identities=22% Similarity=0.201 Sum_probs=104.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
=+.+-+++.+.|+-+|...+.++..--.+. . +.+++..|++. ..+.+.+||+.|+-+|+-++..+++.
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GT-g------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---- 589 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGT-G------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---- 589 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhcc-C------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh----
Confidence 344555666677777766655544322111 1 23567777776 56779999999999999998887764
Q ss_pred HHcCCHHHHHHHhc-cCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc
Q 008781 288 LAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 288 ~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
++..+++|. +.++.+|..++.+|+-.|++.-. +. .+..|-.+..++...||+.|+-++.-+......
T Consensus 590 -----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 590 -----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred -----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 455666665 56799999999999998865432 22 345555566678888999999998887532222
Q ss_pred chhhhhcCCHHHHHHHhcCCChhH
Q 008781 367 QAGIAHNGGLVPLLKLLDSKNGSL 390 (554)
Q Consensus 367 ~~~l~~~~~l~~L~~ll~~~~~~v 390 (554)
..----.++...+.+++.+++.+.
T Consensus 658 ~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 658 QLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred ccCchHHHHHHHHHHHhhhhhhHH
Confidence 211122345566778887765443
No 152
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.14 Score=53.32 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=51.4
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
+..+..+.....-.+..+|..|+.+|+++....+. ....+...|.+.+.+.+.++|..|...|.++..
T Consensus 465 skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 465 SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 33456666666778889999999999999644331 122345677888899999999999999999984
No 153
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.00 E-value=0.21 Score=44.68 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-----CCHHHHHHHHHHHHHHhcCCCc--chhhhhcCCHHHHH
Q 008781 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLL 380 (554)
Q Consensus 308 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-----~~~~v~~~a~~~L~~L~~~~~~--~~~l~~~~~l~~L~ 380 (554)
+..-+.+|.......++.+..+++..+--.+..+|.. +...+|-.+++.++.|...++. ...+...++++..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 4444444444445678888999999887777777762 4567899999999999987654 34577889999999
Q ss_pred HHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHH-HHHHhh
Q 008781 381 KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL-LYLMRV 459 (554)
Q Consensus 381 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L-~~ll~~ 459 (554)
+.+..++..-+.-|+.++..+..++.+...+.. +..++.. -..++..+ ..+.+.
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCq-----------------------t~eRF~a--v~~~L~kmv~~l~~~ 229 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQ-----------------------TAERFSA--VALVLGKMVFQLVSM 229 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHH-----------------------hHHHHHH--HHHHHHHHHHHHhcC
Confidence 999999999999999999998877765444332 1111110 01123333 344566
Q ss_pred CCHHHHHHHHHHHHhhcCCchhhHHHH
Q 008781 460 AEKGVQRRVALALAHLCSPDDQRTIFI 486 (554)
Q Consensus 460 ~~~~v~~~a~~~L~~l~~~~~~~~~~~ 486 (554)
+++.+-..++++..+|+.++..+..+.
T Consensus 230 ps~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 230 PSPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 899999999999999999998776544
No 154
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0083 Score=58.33 Aligned_cols=307 Identities=16% Similarity=0.126 Sum_probs=158.5
Q ss_pred hhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcC------Chh
Q 008781 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV------KPE 148 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~------~~~ 148 (554)
....++.++..+|..+++.-...+.. .-.+.+.+...-.+ .+|+++.+++.++..+-. .|+
T Consensus 267 ~ps~~rle~~qvl~~~a~~~~~~~~~-----~~~l~RvI~~~~~~--------~~p~~~l~~a~ll~~lg~~lv~~~~P~ 333 (728)
T KOG4535|consen 267 EPSPMRLEALQVLTLLARYFSMTQAY-----LMELGRVICKCMGE--------ADPSIQLHGAKLLEELGTGLIQQYKPD 333 (728)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHccCCC--------CChHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 45568999999999988853332211 11222222221110 134899999998887751 222
Q ss_pred hHHHHHHcCChHHHHH------HHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc---CChHHHHHhhc-C
Q 008781 149 HQQLIVDNGALSHLVN------LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME---GGIPPLVELLE-F 218 (554)
Q Consensus 149 ~~~~i~~~g~l~~L~~------lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~---~~i~~L~~ll~-~ 218 (554)
.-+.-...|.+..+.- ..-+... .......|..+.++....... + .. ...+.+..-+. +
T Consensus 334 ~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-------~Tl~~s~Cdals~i~~~~f~~---l-pn~~~T~~~~Fl~GC~d~ 402 (728)
T KOG4535|consen 334 STKAPDQRAPFWTMMLNGPLPRALYDSEH-------PTLQASACDALSSILPEAFSN---L-PNDRQTLCITFLLGCNDS 402 (728)
T ss_pred cccchhhhccHHHHHccCCChhhhhhhcC-------CCchhHHHHHHhhcCchhhcC---C-CCcchhhhHHHHhcccch
Confidence 2222222221111110 1111111 155666777777775421110 0 01 11122222222 2
Q ss_pred CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc----cChh---hHHHHHHcC
Q 008781 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH----SSPN---IKKEVLAAG 291 (554)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~----~~~~---~~~~~~~~~ 291 (554)
.+.-++..|++++.-+.-+..-......-.++...++..+.+..-..|..+.|+++||+. +.+. ....+.. -
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ 481 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-L 481 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-H
Confidence 334467777787777665322222222223456666777777777899999999999964 1222 1112111 1
Q ss_pred CHHHHHHHhc---cCChHHHHHHHHHHHHHhcCCc---ccHHHHHHcCCHHHHHHH-hCCCCHHHHHHHHHHHHHHhcCC
Q 008781 292 ALQPVIGLLS---SCCSESQREAALLLGQFAATDS---DCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 292 ~l~~L~~lL~---~~~~~~~~~a~~~L~nl~~~~~---~~~~~~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~L~~~~ 364 (554)
.+..++..-. ..+..++..+.++|+|+...-. .+.......+-+..++.. .-.....++-++|.+++||..++
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 2222333222 2346788899999999863211 111111112222222221 22456789999999999999876
Q ss_pred Ccc--hhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHHcccCCc
Q 008781 365 HNQ--AGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNED 406 (554)
Q Consensus 365 ~~~--~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 406 (554)
.-. ..-+.....+.|..++. ..+-.|+..|+.+|..-....+
T Consensus 562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 432 22233334556666664 4677899999999887765433
No 155
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.99 E-value=0.066 Score=52.82 Aligned_cols=193 Identities=10% Similarity=0.143 Sum_probs=126.0
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC---CccchHHHHhcCCHHHHHHhhcC
Q 008781 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRS 260 (554)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~ll~~ 260 (554)
.|+.+|-.+....+..-..+...+|+..++..++..-...... -.+...+ .++....... ...+..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVD-------GYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCccccccc-------ccccCH
Confidence 5677777777777777788899999999999986431111110 0011100 0000100100 000001
Q ss_pred CCHHHHHHHHHHHHHHhc---cChhhHHHHHH-cCCHHHHHHHhccCC---hHHHHHHHHHHHHHhcCCcccHHHHHHcC
Q 008781 261 EDSAIHYEAVGVIGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRG 333 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 333 (554)
......+..++++..+.. +....-..+++ ..++..|..++++.. +.+...|+.++..+...+|.+...+.+.|
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G 151 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG 151 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence 112233444444444444 22333344555 556777778887653 57788889999999988899999999999
Q ss_pred CHHHHHHHhC-C---CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCC
Q 008781 334 AVRPLIEMLQ-S---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387 (554)
Q Consensus 334 ~~~~L~~~l~-~---~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~ 387 (554)
+++.++..+. . ++.++....-.+|..||-+....+.+.+.+.++.+++++.+++
T Consensus 152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999999887 3 4678888888999999999888889999999999999886643
No 156
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.31 Score=52.20 Aligned_cols=282 Identities=10% Similarity=0.043 Sum_probs=155.3
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc---CChhhHHHHHHcCChHHHHHHHhccccCccccchh
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~---~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~ 179 (554)
.|.++.+++++...... .++-.++.-+..|+.++++++ ..+..-+...+.-.++++.-.++++..
T Consensus 409 ~k~l~F~~~Il~~~~~~----~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g-------- 476 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEA----SPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG-------- 476 (1010)
T ss_pred hhHHHHHHHHHHhhccc----CCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh--------
Confidence 35677888888744331 123345678889999999998 222222333334446666666777766
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhccCCccchHHHHh--cCCHHHHHH
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLIL 256 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ 256 (554)
-++..|||++..++..+-.... .-..++......+. +.+-.++..|+-+|..+..+.+.....+.. .+.++.|++
T Consensus 477 ~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~ 554 (1010)
T KOG1991|consen 477 YLRARACWVLSQFSSIDFKDPN--NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK 554 (1010)
T ss_pred HHHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH
Confidence 8999999999999943222222 22234555666666 667789999999999998855544443332 244555666
Q ss_pred hhcCCCHHHHHHHHHHH-HHHhccChhhHHHHH--HcCCHHHHHHHhcc---C---ChHHHHHHHHHHHHHhcC--Cccc
Q 008781 257 MLRSEDSAIHYEAVGVI-GNLVHSSPNIKKEVL--AAGALQPVIGLLSS---C---CSESQREAALLLGQFAAT--DSDC 325 (554)
Q Consensus 257 ll~~~~~~v~~~a~~~L-~~L~~~~~~~~~~~~--~~~~l~~L~~lL~~---~---~~~~~~~a~~~L~nl~~~--~~~~ 325 (554)
+.+.-+.+.....+..+ +..+ ++...... -..+...+.+++.. . +.+-...|.++|..+..- +-+.
T Consensus 555 L~ne~End~Lt~vme~iV~~fs---eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~ 631 (1010)
T KOG1991|consen 555 LSNEVENDDLTNVMEKIVCKFS---EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLEN 631 (1010)
T ss_pred HHHhcchhHHHHHHHHHHHHHH---HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 66654444444444333 2222 22211111 12345556666653 1 122334444454444310 0111
Q ss_pred HHHHH---HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC-cchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 326 KVHIV---QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 326 ~~~~~---~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
...+. +..+++.+-.++++.-.++-+.++..+.+++.... ....++. .++.+.+++......--....-+|.|+
T Consensus 632 ~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 632 HPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNY 709 (1010)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 11111 23455666666777667777788888887765432 2233332 455555665555555555555666665
Q ss_pred cc
Q 008781 402 AD 403 (554)
Q Consensus 402 ~~ 403 (554)
..
T Consensus 710 vt 711 (1010)
T KOG1991|consen 710 VT 711 (1010)
T ss_pred ee
Confidence 44
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.96 E-value=0.0043 Score=47.78 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCC
Q 008781 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387 (554)
Q Consensus 308 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~ 387 (554)
++.++.+|..++-.-...... .-..++++++..+.++++.+|..|+.+|.|++..........-......|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~-~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISK-YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 445666676665333332222 2245889999999999999999999999999875433222223456777889999999
Q ss_pred hhHHHHHHHHHHHc
Q 008781 388 GSLQHNAAFALYGL 401 (554)
Q Consensus 388 ~~v~~~a~~~L~~l 401 (554)
+.|+..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9998766 444443
No 158
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.11 Score=53.75 Aligned_cols=229 Identities=21% Similarity=0.173 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (554)
-+|-..++.|.+|- .+|. -...+|.+...|.+.+. -++++|.-++..+-...+. ...++-.
T Consensus 114 yiRG~TLRFLckLk-E~EL-----lepl~p~IracleHrhs--------YVRrNAilaifsIyk~~~~-----L~pDape 174 (948)
T KOG1058|consen 114 YIRGSTLRFLCKLK-EPEL-----LEPLMPSIRACLEHRHS--------YVRRNAILAIFSIYKNFEH-----LIPDAPE 174 (948)
T ss_pred hhcchhhhhhhhcC-cHHH-----hhhhHHHHHHHHhCcch--------hhhhhhheeehhHHhhhhh-----hcCChHH
Confidence 56656666665553 2222 23456777777777766 8888888888777652111 1122222
Q ss_pred HHHHhh-cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh---hcCCCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 211 PLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM---LRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 211 ~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l---l~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
.+-+.| ...|+...+.|...|...- ++. ++..+... ..+-++..+...+..+...+..++..+..
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D---~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~ 243 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTD---PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR 243 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcC---HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH
Confidence 333333 4467777777766655432 221 12222222 22335666666777777766655554333
Q ss_pred HHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCC
Q 008781 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMH 365 (554)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~ 365 (554)
.+..+..+|.+.++.+..+|+..|-+++. ++...+. ....++.++. .++-.+.--.+.-|..+. .
T Consensus 244 -----~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~---~ 309 (948)
T KOG1058|consen 244 -----YIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELK---A 309 (948)
T ss_pred -----HHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHh---h
Confidence 45678888888788888888888877753 2332221 1233334333 122233323333333333 1
Q ss_pred cchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC
Q 008781 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (554)
....+ -.|.+-.++++|++++-+++..++.....|+.+
T Consensus 310 ~~~~i-l~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 310 LHEKI-LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred hhHHH-HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 11111 234566678888888889998888887777644
No 159
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.0071 Score=62.68 Aligned_cols=241 Identities=18% Similarity=0.123 Sum_probs=160.7
Q ss_pred ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHH-HhcCChhhHHHHHHcCChHHHHHHHhcccc
Q 008781 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGALSHLVNLLKRHMD 171 (554)
Q Consensus 93 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~-~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~ 171 (554)
...-+...++.|+...|+++...... ..+.+...+|. .+....+ + ....++.+.+.+.....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e------------~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~ 555 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFE------------EAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEK 555 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhch------------HHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHH
Confidence 45556677889999999999887776 66667777776 4441111 0 11235555555554322
Q ss_pred CccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHh-cCC
Q 008781 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNA 250 (554)
Q Consensus 172 ~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~ 250 (554)
. --.-.++.++.||+..+...+..+....+++.+-.++...++..+..++..+.||..+..-....+.+ ...
T Consensus 556 ~-------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~ 628 (748)
T KOG4151|consen 556 G-------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDR 628 (748)
T ss_pred H-------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccC
Confidence 1 22234778899999888888888888888888888888899999999999999999854444444555 344
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHH-HHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHH
Q 008781 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (554)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 329 (554)
++.....+...+......+++++..++......+. ..........+..++.+.+.+++...+.+..|+..........+
T Consensus 629 l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~ 708 (748)
T KOG4151|consen 629 LKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKI 708 (748)
T ss_pred chHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 55555555566777888888888877766666655 33335677888899999999999999999988765444444445
Q ss_pred HHcCCHHHHHHHhCCCCHHHHHHHHHHH
Q 008781 330 VQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (554)
Q Consensus 330 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L 357 (554)
.....++.+..+-+-.....++.+..+|
T Consensus 709 ~~~~~~~~l~~~~~~~~a~~~~~~~~~l 736 (748)
T KOG4151|consen 709 FETEVMELLSGLQKLNRAPKREDAAPCL 736 (748)
T ss_pred ccchHHHHHHHHHHhhhhhhhhhhhhHH
Confidence 5555555544443322333333333333
No 160
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.93 E-value=0.096 Score=45.91 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHH
Q 008781 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~ 341 (554)
++.+|..++.+++.|+...+.... ..++.+...|.++++.+|+.|+.+|..|...+.-. .+..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 478999999999999876655432 35788999999999999999999999997543221 112234777788
Q ss_pred hCCCCHHHHHHHHHHHHHHhcC
Q 008781 342 LQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 342 l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
+.++++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999865
No 161
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.9 Score=48.89 Aligned_cols=395 Identities=16% Similarity=0.113 Sum_probs=194.9
Q ss_pred hhHHHHHHHHHHHHHhcc----ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhh
Q 008781 75 ADRAAAKRATHVLAELAK----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH 149 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~ 149 (554)
.+.....-|++.++++++ ...++. ..+.=.++.+...++++.. -+|.+|+|.++.++ .+ +
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g------------~Lrarac~vl~~~~~~d--f 494 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYG------------YLRARACWVLSQFSSID--F 494 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchh------------HHHHHHHHHHHHHHhcc--C
Confidence 344456667777777764 222222 2222345666667777766 89999999999999 22 1
Q ss_pred HHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHH
Q 008781 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAA 227 (554)
Q Consensus 150 ~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a 227 (554)
++.-.-..++....+.|.+++.- .++..|+-+|..+....+.....+.. .+.+..|+.+.+..+.+....+
T Consensus 495 ~d~~~l~~ale~t~~~l~~d~~l-------PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 495 KDPNNLSEALELTHNCLLNDNEL-------PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred CChHHHHHHHHHHHHHhccCCcC-------chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 12222233456666777643322 88889999999998866654443322 2344455555554433333333
Q ss_pred HHH-HHHhccCCccchHHHHhcCCHHHHHHhhcC---C---CHHHHHHHHHHHHHHhc------cChhhHHHHHHcCCHH
Q 008781 228 AGA-LRTLAFKNDENKNQIVECNALPTLILMLRS---E---DSAIHYEAVGVIGNLVH------SSPNIKKEVLAAGALQ 294 (554)
Q Consensus 228 ~~~-L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~---~~~v~~~a~~~L~~L~~------~~~~~~~~~~~~~~l~ 294 (554)
+.. +...+..-......+. ..+...+.+++.. . +.+=...|.++|..+.+ +.++.-+ -++.-.++
T Consensus 568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 322 2222221111112222 2345566666653 2 22334445555554432 1121111 11233556
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcC
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~ 374 (554)
.+-.+|.+.-.++-++++..+.+++...++....+ =|+++.+.+.+++....--....-+|.|......+ .+...+
T Consensus 646 vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~--~~~s~~ 721 (1010)
T KOG1991|consen 646 VIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP--SLLSNP 721 (1010)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch--hhhccc
Confidence 66666777667788888887777764433322222 24567777777766666666777788887654332 222222
Q ss_pred -----CHHHHHHHhcCCC--hhHHHHHHHHHHHcccCCcc-----hhHHHhhCccccccchhhhhhhhHHHHHH------
Q 008781 375 -----GLVPLLKLLDSKN--GSLQHNAAFALYGLADNEDN-----VADFIRVGGVQKLQDGEFIVQATKDCVAK------ 436 (554)
Q Consensus 375 -----~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~i~~L~~~~~~~~~~~~~~~~------ 436 (554)
....+..++.+.+ ..=.+.|+..+..+..+-.+ ...+++.- +..+... ......+.|+.+
T Consensus 722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a-~~~l~~~-~e~s~~~~~~leVvinal 799 (1010)
T KOG1991|consen 722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELA-LSRLTRE-VETSELRVMLLEVVINAL 799 (1010)
T ss_pred hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHH-HHHHhcc-ccchHHHHHHHHHHHHHH
Confidence 1222333444422 22234466666655443322 23333321 1111110 011111222111
Q ss_pred ------HHHHHHH-----HHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCC
Q 008781 437 ------TLKRLEE-----KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS 500 (554)
Q Consensus 437 ------~~~~l~~-----~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~ 500 (554)
++.-++. .+-...+..+....+..+..+...++.+|..+-..+..-..... +..+.++.++.+
T Consensus 800 yynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~-~l~~~lv~L~~~ 873 (1010)
T KOG1991|consen 800 YYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLG-QLGPALVELLLS 873 (1010)
T ss_pred HcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHH-HHHHHHHHHHHH
Confidence 1111111 01222334444455556777777777777777533333322222 667788877763
No 162
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.51 Score=51.69 Aligned_cols=224 Identities=15% Similarity=0.168 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
+.+|..+-++|..++..+.......+. +..+.+.|.+....+.. ..+...+.+|..+....+.....+... .|
T Consensus 668 ~~vQkK~yrlL~~l~~~~s~~~~~~q~--i~~I~n~L~ds~qs~~~----~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I 740 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSPSGEGLVEQR--IDDIFNSLLDSFQSSSS----PAQASRLKCLKRLLKLLSAEHCDLIPK-LI 740 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHH--HHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHhccHHHHHHHHH-HH
Confidence 389999999999999554443322222 44445555443322211 677777888888776555222222222 33
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc--C--CccchHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHHHHhccCh
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAF--K--NDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSP 281 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~--~--~~~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~ 281 (554)
+-++-.++..+...+..+..+|..++. . .+.+-. ....+..++..+. .+...+....+-++..+.....
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 333333477888899999999988872 1 111100 0013334444333 2333333332444445543322
Q ss_pred hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
.......-.++++.+..+|.+...++++.|+..+..++...++....-....+++.+..|+.+....++..+-..|-.|.
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 22222223456777778888999999999999999988766654444444458888999888888888888888887777
Q ss_pred cC
Q 008781 362 QD 363 (554)
Q Consensus 362 ~~ 363 (554)
+.
T Consensus 898 rk 899 (1176)
T KOG1248|consen 898 RK 899 (1176)
T ss_pred HH
Confidence 53
No 163
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.75 E-value=0.16 Score=44.57 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh
Q 008781 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 383 (554)
Q Consensus 304 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll 383 (554)
++.++..++.+++.|+...+... ...++.+...|.++++.+|..|+.+|.+|...+-.+ ++...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik---~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK---VKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee---ehhhhhHHHHHHH
Confidence 46788899999999985544322 236789999999999999999999999998754322 1222347788889
Q ss_pred cCCChhHHHHHHHHHHHcccC
Q 008781 384 DSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 384 ~~~~~~v~~~a~~~L~~l~~~ 404 (554)
.+++++|+..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 164
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.70 E-value=0.17 Score=49.95 Aligned_cols=271 Identities=14% Similarity=0.167 Sum_probs=146.0
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (554)
|..++.=|.++.+ ..+|..++--|+.-+.+++++..+..+|..+.+++.+.+...+ .+...+
T Consensus 23 v~ylld~l~~~~~-----------~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~ 84 (361)
T PF07814_consen 23 VEYLLDGLESSSS-----------SSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALA 84 (361)
T ss_pred HHHHHhhcccCCC-----------ccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHH
Confidence 5566666663322 1789999999999999999999999999999999999765542 344455
Q ss_pred HHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--C---CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-
Q 008781 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR- 259 (554)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~- 259 (554)
+.++..+...+......+.+.+....++.++.. . .......-...+... .+ +.+..+...+.
T Consensus 85 ~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~-------~~-----~~~~~~~~~~~~ 152 (361)
T PF07814_consen 85 TAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKV-------QQ-----KSRSLCKELLSS 152 (361)
T ss_pred HHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHH-------HH-----HHHHHHHHHHhc
Confidence 444444443344444444456666666777761 1 000000000000000 00 01111111110
Q ss_pred --------CCCHHHHHHHHHHHHHHh--------------ccChhhHHHHHHcCCHHHHHHHhcc----C-------Ch-
Q 008781 260 --------SEDSAIHYEAVGVIGNLV--------------HSSPNIKKEVLAAGALQPVIGLLSS----C-------CS- 305 (554)
Q Consensus 260 --------~~~~~v~~~a~~~L~~L~--------------~~~~~~~~~~~~~~~l~~L~~lL~~----~-------~~- 305 (554)
......+..+..++-.++ ...+..++.+...|+++.++.++.+ . .+
T Consensus 153 ~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~ 232 (361)
T PF07814_consen 153 GSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPS 232 (361)
T ss_pred cccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccc
Confidence 112233444444444442 1123345667777889999988752 1 00
Q ss_pred ----HHHHHHHHHHHHHhcCCcccHHHHHHc--CCHHHHHH-HhC---CCCHHHHHHHHHHHHHHhcCCC-cchhhhhcC
Q 008781 306 ----ESQREAALLLGQFAATDSDCKVHIVQR--GAVRPLIE-MLQ---SPDVQLREMSAFALGRLAQDMH-NQAGIAHNG 374 (554)
Q Consensus 306 ----~~~~~a~~~L~nl~~~~~~~~~~~~~~--~~~~~L~~-~l~---~~~~~v~~~a~~~L~~L~~~~~-~~~~l~~~~ 374 (554)
.....+..+|-+.+...++++.++... +.++.+.. .+. .....+...++..+.|++.+.+ ....+...+
T Consensus 233 ~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 233 LQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred hHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 123356677888776667777766653 23333222 222 2234446688888889986552 233333332
Q ss_pred CHHH---HHH----Hhc-------CCChhHHHHHHHHHHHcccCCc
Q 008781 375 GLVP---LLK----LLD-------SKNGSLQHNAAFALYGLADNED 406 (554)
Q Consensus 375 ~l~~---L~~----ll~-------~~~~~v~~~a~~~L~~l~~~~~ 406 (554)
.... +.. ++. ...-+....++.+|.|++...+
T Consensus 313 l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 313 LGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred hccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence 2111 111 111 1224567778888999887643
No 165
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.67 E-value=0.031 Score=51.09 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (554)
..+..|+.+|.-+|--+|+.+..+.....+..++.++. ...+.++.+++.+|..+.-+++.|.+.+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 56777889999999999999999999999999999994 45788999999999999988999999999999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHHhc
Q 008781 259 RSE--DSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 259 ~~~--~~~v~~~a~~~L~~L~~ 278 (554)
++. +.+++..++..|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 854 67899999998877654
No 166
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.66 E-value=0.0059 Score=48.34 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=63.1
Q ss_pred hhchHHHHHHHH-hhCCHHHHHHHHHHHHhhcCC-chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 446 HGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 446 ~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+..++..|+.+| .+.++.+..-||.=|+.++.. |.++..+.+.|+-..+.+++.++|++||..|..++..+..+.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 445789999999 556888888899999999665 668888888999999999999999999999999999987654
No 167
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.60 E-value=0.036 Score=50.73 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHc
Q 008781 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (554)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~ 156 (554)
....|+++|.-++- +|..+..+.+...+..|+++|..... +.++..++.+|..+. +++.+.+.+-..
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~-----------~~i~~a~L~tLv~iLld~p~N~r~FE~~ 175 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNP-----------PAIQSACLDTLVCILLDSPENQRDFEEL 175 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCC-----------chHHHHHHHHHHHHHHcChHHHHHHHHh
Confidence 55667788887777 89999999999999999999954332 288999999998888 999999999999
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS 197 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~ 197 (554)
+|+..++.++++...+. +++-.++..|+-......
T Consensus 176 ~Gl~~v~~llk~~~~~~------~~r~K~~EFL~fyl~~E~ 210 (257)
T PF08045_consen 176 NGLSTVCSLLKSKSTDR------ELRLKCIEFLYFYLMPET 210 (257)
T ss_pred CCHHHHHHHHccccccH------HHhHHHHHHHHHHHcccC
Confidence 99999999999876644 888889988887776433
No 168
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.57 E-value=0.74 Score=47.33 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (554)
.....|+..|..+....|..... .+..+++++.+.|..||..|++.|..+|.++++.... +.+.|+.+|.
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~ 106 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHh
Confidence 88899999999999988887665 5679999999999999999999999999866665444 3578999999
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---cCChHHHHHHHHHHHH
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQ 317 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~~~~a~~~L~n 317 (554)
++++.....+-.+|..+...++.. .+..+..-+. +.+..+++.+...|..
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 988877777777777776544432 3344444443 4566778887766643
No 169
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.54 E-value=0.094 Score=47.74 Aligned_cols=226 Identities=15% Similarity=0.136 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHHc-CCHHHHHHHhcc-------CC--hH--HHH-HHHHHHHHHhcCCcccHHH
Q 008781 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS-------CC--SE--SQR-EAALLLGQFAATDSDCKVH 328 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~~-------~~--~~--~~~-~a~~~L~nl~~~~~~~~~~ 328 (554)
+++.|+.|+.-|+.--...++..-.+... |.+..|++=+-+ +. .. .+. .|...|.-++ .+++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vA-shpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVA-SHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHH-H-TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHH-cChHHHHH
Confidence 56778888777766644555655555543 666555543322 11 11 122 2333444555 57889999
Q ss_pred HHHcCCHHHHHHHhCCC-----CHHHHHHHHHHHHHHhcCCCc--chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 329 IVQRGAVRPLIEMLQSP-----DVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 329 ~~~~~~~~~L~~~l~~~-----~~~v~~~a~~~L~~L~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
+++.++.-.|..+|... -..+|-.+++.++.|...++. -..+...+.+|..++.+..++.--+..|..++..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999887788887632 245888999999999975443 34577888999999999999888888999999998
Q ss_pred ccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHH-HHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 402 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
..++.+...+...- .++.. -..++..++. +.+.+++.+-..++++...|+.++.
T Consensus 167 L~dd~GL~yiC~t~-----------------------eRf~a--v~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 167 LLDDVGLNYICQTA-----------------------ERFFA--VAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHSHHHHHHHTSSH-----------------------HHHHH--HHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HcchhHHHHHhcCH-----------------------HHHHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 87765544433210 00000 1112444444 4466889999999999999999998
Q ss_pred hhHHHHHcCcHHHHH------HhhCCCChhHHHHHHHHHHHH
Q 008781 481 QRTIFIDGGGLELLL------GLLGSTNPKQQLDGAVALFKL 516 (554)
Q Consensus 481 ~~~~~~~~~~l~~L~------~ll~~~~~~v~~~a~~~L~~L 516 (554)
.+..+.+ .+|.-. .++ .+|+.++..-...+.|+
T Consensus 222 ar~aL~~--~LP~~Lrd~~f~~~l-~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 222 AREALRQ--CLPDQLRDGTFSNIL-KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHH--HS-GGGTSSTTTTGG-CS-HHHHHHHHHHHHHT
T ss_pred HHHHHHH--hCcHHHhcHHHHHHH-hcCHHHHHHHHHHHHHh
Confidence 8876553 222211 111 34666666555555554
No 170
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.52 E-value=0.27 Score=47.18 Aligned_cols=179 Identities=22% Similarity=0.195 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhccC--CccchHHHHhcCCHHHHH
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLI 255 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~ 255 (554)
..|..++..+.++....... ..+.. ...+..+.+.++.+...-+..|+.++.-++-. .......+.+ .+.|.|.
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~ 135 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence 88889999888888644432 22221 23467777788877776677777777777653 2344445554 3678888
Q ss_pred HhhcCCC--HHHHHHHHHHHHHHhc---cChhhHHHHHHcCCHHHHHHH--hcc----------CChHHHHHHHHHHHHH
Q 008781 256 LMLRSED--SAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGL--LSS----------CCSESQREAALLLGQF 318 (554)
Q Consensus 256 ~ll~~~~--~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~~l--L~~----------~~~~~~~~a~~~L~nl 318 (554)
..+.+.. ..+|..++.+|+-++. ..++.....+ ..+..+... ... +++.+...|+.+.+-|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 8887553 4667777777776654 2222222111 123322221 211 1245666777666666
Q ss_pred hcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
...-+.....-.-...++.|..+|.+++..+|.+|..+|.-|..
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 65444432222224468999999999999999999999887753
No 171
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.50 E-value=0.033 Score=57.99 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=142.8
Q ss_pred CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHH-HHhhcCchhHHHHHhcCChHHHHHhhcCCCH-H
Q 008781 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT-NLAHENSSIKTRVRMEGGIPPLVELLEFTDT-K 222 (554)
Q Consensus 145 ~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~ 222 (554)
....-+...++.|+...|+++...... ..+.....+|. .+....... ...++.+...+..... .
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e--------~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~ 557 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFE--------EAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGL 557 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhch--------HHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHH
Confidence 555666778889999999999988766 55555666665 222211111 2234444444433221 2
Q ss_pred HHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHH-cCCHHHHHHHhc
Q 008781 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS 301 (554)
Q Consensus 223 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~ 301 (554)
-...++.++.|++..+...++.+.+.-.++.+-.++..+++..+..++..+.||..++.-....+.+ ...++.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 3356788999999877777777877767777777788899999999999999998876666666666 445665555666
Q ss_pred cCChHHHHHHHHHHHHHhcCCcccHH-HHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 302 SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 302 ~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
.........++.++..+++....+.. ..........+..++.+.+..+++..+....|+..
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 65666777777777777766666655 44446677888999999999999999999888543
No 172
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.50 E-value=0.66 Score=49.36 Aligned_cols=314 Identities=15% Similarity=0.146 Sum_probs=173.3
Q ss_pred HHHHHhhhhccchHhhHHHHHHHHHHHHHhccC-hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHH
Q 008781 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (554)
Q Consensus 61 ~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~ 139 (554)
.+..++...+-.+. -+....++.+.+...+.. ..+...+ .-.+...+..+.-+.+ +-++..|+++
T Consensus 449 ~l~~~~~~~l~~~e-~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~-----------~~~ki~a~~~ 514 (1005)
T KOG2274|consen 449 ELTIMIDNGLVYQE-SPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVP-----------PPVKISAVRA 514 (1005)
T ss_pred HHHHHHHhhccccc-CHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCC-----------CchhHHHHHH
Confidence 33334444443333 334555788887766552 1111111 1124444455544333 1567777777
Q ss_pred HHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh--c
Q 008781 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL--E 217 (554)
Q Consensus 140 L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll--~ 217 (554)
+.-.|...-. .-...+++..|+.+...... ++......+|+..|.-+++... -....+.|.++.+. .
T Consensus 515 ~~~~~~~~vl--~~~~p~ild~L~qlas~~s~--------evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~ 583 (1005)
T KOG2274|consen 515 FCGYCKVKVL--LSLQPMILDGLLQLASKSSD--------EVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKY 583 (1005)
T ss_pred HHhccCceec--cccchHHHHHHHHHcccccH--------HHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHh
Confidence 7777621111 11123456666677666655 8888899999999987776433 34566777777755 3
Q ss_pred CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHHhccChhhHHHHHHcCCH
Q 008781 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (554)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (554)
+.||.+...+-.++..++. ...+..-+.+ ..+|.+++.+..+. .....-++..|..+..+.+.--...+-.-++
T Consensus 584 s~DP~V~~~~qd~f~el~q-~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~F 661 (1005)
T KOG2274|consen 584 SEDPQVASLAQDLFEELLQ-IAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAF 661 (1005)
T ss_pred cCCchHHHHHHHHHHHHHH-HHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHh
Confidence 4677777777777777775 3444444443 36999999998665 5677777777777766544322333334467
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCH------HHHHHHhCCCCHHHHHHHHHHHHHHhcCC--
Q 008781 294 QPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV------RPLIEMLQSPDVQLREMSAFALGRLAQDM-- 364 (554)
Q Consensus 294 ~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~------~~L~~~l~~~~~~v~~~a~~~L~~L~~~~-- 364 (554)
+++.++. .+.+.++...+..||..+.+.+.+....-...++. +.+-.+|. ++.-+.++...+.+...-
T Consensus 662 paVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd---p~~sds~a~~VG~lV~tLit 738 (1005)
T KOG2274|consen 662 PAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD---PETSDSAAAFVGPLVLTLIT 738 (1005)
T ss_pred HHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC---CccchhHHHHHhHHHHHHHH
Confidence 7777765 45677888888899988876554433322222222 23333333 222223333333332110
Q ss_pred Ccchhhhh--cCCHHH-HHHHhcCCChhHHHHHHHHHHHcccC
Q 008781 365 HNQAGIAH--NGGLVP-LLKLLDSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 365 ~~~~~l~~--~~~l~~-L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (554)
+....+.. ..++.. +.++.......+...-..+++.|...
T Consensus 739 ~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 739 HASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence 00011111 012222 33444556677777777788877544
No 173
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.47 E-value=0.015 Score=44.86 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=55.2
Q ss_pred hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
-..+++.++..+.++++.||..|+.+|.+++..-.......-....+.|..+..+.++.||.. +..|-++.+
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~-a~~Ld~llk 96 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSA-AELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH-HHHHHHHhc
Confidence 344689999999999999999999999999755443332233456788899999999999874 466766654
No 174
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=2 Score=47.39 Aligned_cols=182 Identities=15% Similarity=0.141 Sum_probs=107.3
Q ss_pred cCCCHHHHHHHHHHHHHhccCCccchHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 217 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
++.+..+|..+...|..++.. +.......+. .+...|.+-+.+.....+...+.+|..|....+..-..++.. .++
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHH
Confidence 445889999999999999974 3333222221 234455555566677888888888888876544211222222 333
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcC------CHHHHHHHhCC----CCHHHHHHHHHHHHHHhcCC
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG------AVRPLIEMLQS----PDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~------~~~~L~~~l~~----~~~~v~~~a~~~L~~L~~~~ 364 (554)
-++-.+...+...++.+..+|..++. .....+.| .+..++..+.. ....+....+-++..+....
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 33334477778888888888888872 11112222 34444444442 22233333255666665433
Q ss_pred Ccc-hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC
Q 008781 365 HNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (554)
Q Consensus 365 ~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (554)
.+. ..-.-.+.+..+.-+|.+.+.+++..|...+..++...
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 221 11122335566667778899999999999988886543
No 175
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.43 E-value=0.0074 Score=47.80 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=60.7
Q ss_pred ChHHHHHhh-cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 208 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 208 ~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
.+..|+.+| .+.|+.+..-||.-|+.++...|..+..+-+.|+=..++.++.+++++|+..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467888988 45678888899999999999889998888888999999999999999999999999987754
No 176
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.15 Score=53.57 Aligned_cols=216 Identities=12% Similarity=0.090 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~ 154 (554)
...++-.++..|+.+.+..+....+...+++...+..|++.++ -+-..|.+.+..|| ..|
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds------------yvyLnaI~gv~~Lcevy~------- 800 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS------------YVYLNAIRGVVSLCEVYP------- 800 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc------------eeeHHHHHHHHHHHHhcc-------
Confidence 4457889999999999876777778889999999999999887 66678888888888 333
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
..++|.+...-.+....... +.+-..-.++.++...-.+....... ..+..++..+++++...|..++..++++
T Consensus 801 -e~il~dL~e~Y~s~k~k~~~----d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKLQT----DYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred -hhhHHHHHHHHHhcccCCCc----cceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 34567777633332221111 33333335555555422222222221 4567788888888888899999999999
Q ss_pred ccCCccc-hHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHH---HcCCHHHHHHHhccC-ChHHH
Q 008781 235 AFKNDEN-KNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL---AAGALQPVIGLLSSC-CSESQ 308 (554)
Q Consensus 235 ~~~~~~~-~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~---~~~~l~~L~~lL~~~-~~~~~ 308 (554)
+.-.... .+.+.+ ++..++.+.+ +++.-+|+.|+..+..+-.+.....-.+. ..+....+.+..+.. +..++
T Consensus 875 cq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~k 952 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLK 952 (982)
T ss_pred HHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 8633211 112222 3455555555 66789999999999998765443222221 113334444444433 34455
Q ss_pred HHHHHHHHHH
Q 008781 309 REAALLLGQF 318 (554)
Q Consensus 309 ~~a~~~L~nl 318 (554)
..+..++-.+
T Consensus 953 lhaql~leei 962 (982)
T KOG4653|consen 953 LHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHH
Confidence 6666555444
No 177
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.32 E-value=0.04 Score=58.15 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=109.9
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhh
Q 008781 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (554)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (554)
..++|.+++.....+...+..-+.+|.++..+-|. +.+.. ..++|.|++.|.-+|..+|..+..++.-+....+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 36788999988866666777777888888864333 33332 356788888888999999999999998886544332
Q ss_pred HHHHHHcCCHHHHHHHhccCC---hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008781 284 KKEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (554)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L 360 (554)
...- -.-+++.+..+-.+.+ ..++..|..+|..++..-|..........++..++..|.++..-+|..|..+=.+.
T Consensus 944 ~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 944 QTEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred chHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 2111 1236666666666554 56888999999999875666655566777899999999998888999988765443
No 178
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.47 Score=49.36 Aligned_cols=238 Identities=13% Similarity=0.179 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHH
Q 008781 77 RAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (554)
Q Consensus 77 ~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 155 (554)
...+.-.++.++..+. +|.-+..+ +..+..+|.+.++ .++..|+..|..++.+|..-..-
T Consensus 220 ~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stss------------aV~fEaa~tlv~lS~~p~alk~A-- 280 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSS------------AVIFEAAGTLVTLSNDPTALKAA-- 280 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCc------------hhhhhhcceEEEccCCHHHHHHH--
Confidence 3455555555655555 44433333 6677888888866 88888888888888776543332
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 235 (554)
...+++++.+..+. .+.-..+.-|..+...++. .-.|.+--+++.|.++|-+++..++.....++
T Consensus 281 ---a~~~i~l~~kesdn-------nvklIvldrl~~l~~~~~~-----il~~l~mDvLrvLss~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 281 ---ASTYIDLLVKESDN-------NVKLIVLDRLSELKALHEK-----ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLV 345 (948)
T ss_pred ---HHHHHHHHHhccCc-------chhhhhHHHHHHHhhhhHH-----HHHHHHHHHHHHcCcccccHHHHHHHHHHhhh
Confidence 24455555544332 4444455555555422221 12456667788889999999999998888887
Q ss_pred cCCccchHHHHhcCCHHHHHH-hhc------CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHH
Q 008781 236 FKNDENKNQIVECNALPTLIL-MLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 308 (554)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~-ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~ 308 (554)
.. .+...+. ..|-+ +.+ +.+..-|..-+++++..+..-++.... +++.++..+.+.++...
T Consensus 346 ss--rNvediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-----vV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 346 SS--RNVEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-----VVSLLLDFISDSNEAAA 413 (948)
T ss_pred hh--ccHHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-----HHHHHHHHhccCCHHHH
Confidence 52 2222221 22221 111 233466888999999988776765433 67889999998887665
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCC
Q 008781 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH 365 (554)
Q Consensus 309 ~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~ 365 (554)
...+..+.......+..+.. ++..++..+.. ..+.+.+.++|.++.-|....
T Consensus 414 s~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 414 SDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 55555555554333443332 34445544442 455677889999998886544
No 179
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=96.17 E-value=0.95 Score=43.74 Aligned_cols=154 Identities=12% Similarity=0.034 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHH
Q 008781 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (554)
Q Consensus 55 ~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (554)
.......++++|.... ....+...+++++-++++......+.....+..|+.+-+-...+. ..+...|.++..
T Consensus 43 r~eL~e~i~~Vle~~~-----p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~--sl~~v~d~~vi~ 115 (532)
T KOG4464|consen 43 RKELGERIFEVLENGE-----PLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNEN--SLPTVADMHVIM 115 (532)
T ss_pred HHHHHHHHHHHHhcCC-----CchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccC--CCCcccchHHHH
Confidence 5566777888887763 334566778888888887666655555555666666554322211 122333558888
Q ss_pred HHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHH-HhcCChHHH
Q 008781 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV-RMEGGIPPL 212 (554)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~i~~L 212 (554)
.++++|.|+. +++..++.......+..+++.+.......... ++...=+..|.-+..-....|.++ ...+|++.+
T Consensus 116 EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~l 192 (532)
T KOG4464|consen 116 ESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAELLGLELL 192 (532)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHH
Confidence 9999999999 89999999998888888777775543211100 222333333333333334444443 346777777
Q ss_pred HHhhcC
Q 008781 213 VELLEF 218 (554)
Q Consensus 213 ~~ll~~ 218 (554)
-..+.+
T Consensus 193 t~~led 198 (532)
T KOG4464|consen 193 TNWLED 198 (532)
T ss_pred HHHhhc
Confidence 777654
No 180
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=0.23 Score=52.31 Aligned_cols=315 Identities=14% Similarity=0.118 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH--
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI-- 153 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i-- 153 (554)
|......++..|+.++-+..+...++..|+|..|+.+=+-. +.-.....+|..+......-+.+
T Consensus 366 d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s--------------~~~~g~s~cly~~~~~q~~mervc~ 431 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS--------------ETFYGLSSCLYTIGSLQGIMERVCA 431 (1516)
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch--------------hhhhhHHHHHHHHhhhhhHHHHHhh
Confidence 44466788889999999999999999999999888764332 23334455566665332222222
Q ss_pred ----HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--------C--
Q 008781 154 ----VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--------T-- 219 (554)
Q Consensus 154 ----~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--------~-- 219 (554)
+-+.++..-+.+|..... .-+..+... ...|.....+-..|-..+++..|+.+++. .
T Consensus 432 ~p~~v~~~vv~~~~~l~~cs~~--------~~~~~~~~f-f~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~ 502 (1516)
T KOG1832|consen 432 LPLVVIHQVVKLAIELLDCSQD--------QARKNSALF-FAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDR 502 (1516)
T ss_pred ccHHHHHHHHHHHHHHHhcchh--------hccchHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCc
Confidence 223455666666765443 112222211 12222222333445556777777777652 1
Q ss_pred ---------CHHHHHHHHHHHHHhccC-----CccchHHHHhcCCHHHHHHhhcCCC------HHHHHHHHHHHHHHhcc
Q 008781 220 ---------DTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPTLILMLRSED------SAIHYEAVGVIGNLVHS 279 (554)
Q Consensus 220 ---------~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~~~~L~~ll~~~~------~~v~~~a~~~L~~L~~~ 279 (554)
+...-...|.+|+..... -+..+..-+..+.....++-+...+ .......++-+-.+...
T Consensus 503 ~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~ 582 (1516)
T KOG1832|consen 503 SLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRL 582 (1516)
T ss_pred cccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHh
Confidence 112335566666654321 1122333344455555555443221 12333344433333222
Q ss_pred Ch-------hhHHHHHHcCCHHHHHHHhccC-C-------hHHHHHHHHHHHHHhcCCcccHHHHHHc--------CCHH
Q 008781 280 SP-------NIKKEVLAAGALQPVIGLLSSC-C-------SESQREAALLLGQFAATDSDCKVHIVQR--------GAVR 336 (554)
Q Consensus 280 ~~-------~~~~~~~~~~~l~~L~~lL~~~-~-------~~~~~~a~~~L~nl~~~~~~~~~~~~~~--------~~~~ 336 (554)
-+ .....+...+++..++.+.+.+ + .+....|..+|.-+..- ++.+..+... .++.
T Consensus 583 gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGia 661 (1516)
T KOG1832|consen 583 GPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIA 661 (1516)
T ss_pred ChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceE
Confidence 22 1234556667788888776532 2 34556677777666533 4444444321 2333
Q ss_pred HHHHHhC----CCCHHHHHHHHHHHHHHhcCC-Ccch-----------------------------------hhhhcCCH
Q 008781 337 PLIEMLQ----SPDVQLREMSAFALGRLAQDM-HNQA-----------------------------------GIAHNGGL 376 (554)
Q Consensus 337 ~L~~~l~----~~~~~v~~~a~~~L~~L~~~~-~~~~-----------------------------------~l~~~~~l 376 (554)
.++..-. -.+++++..|+.++.|+...+ +++. .+..+++|
T Consensus 662 IiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGI 741 (1516)
T KOG1832|consen 662 IILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGI 741 (1516)
T ss_pred EEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccH
Confidence 3333322 138899999999999987543 1110 12346789
Q ss_pred HHHHHHhcCCC-----hhHHHHHHHHHHHcccCCcchhHHHhh
Q 008781 377 VPLLKLLDSKN-----GSLQHNAAFALYGLADNEDNVADFIRV 414 (554)
Q Consensus 377 ~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~ 414 (554)
..|+++++-+. ..++..||.+|..|++++.-++.+.+-
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 99999997654 368999999999999998877665553
No 181
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.08 E-value=0.56 Score=45.04 Aligned_cols=170 Identities=19% Similarity=0.208 Sum_probs=111.3
Q ss_pred CChHHHH-HhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHH
Q 008781 104 GAVPALV-KHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (554)
Q Consensus 104 g~v~~Lv-~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (554)
+.+..|+ +.+++++. .+|..++.+||-.| -+.+... ..++.+...++.... ++
T Consensus 26 ~ll~~lI~P~v~~~~~------------~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~--------~v 80 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDP------------AVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDE--------EV 80 (298)
T ss_pred HHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCH--------HH
Confidence 3344444 56667666 99999999999999 5554322 235667777755433 99
Q ss_pred HHHHHHHHHHHhhcCch-hHHH-------HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHH
Q 008781 182 IRRAADAITNLAHENSS-IKTR-------VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (554)
Q Consensus 182 ~~~a~~~L~~L~~~~~~-~~~~-------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 253 (554)
+..|+.++..+...+.. .-.. ......+..+.+.+.+.+++++..++..++.+...+.-.- ...++..
T Consensus 81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~ 156 (298)
T PF12719_consen 81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSR 156 (298)
T ss_pred HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHH
Confidence 99999999998753321 1111 1123456778888888999999999999999876332221 1223334
Q ss_pred HHHh-hc---CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC
Q 008781 254 LILM-LR---SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (554)
Q Consensus 254 L~~l-l~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (554)
|+-+ .. .++..+|..-..++-..+..++.+ +..+...+++.+..+....
T Consensus 157 Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 157 LLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 4332 22 345677877777888888877766 4555567778877777643
No 182
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.03 E-value=0.14 Score=54.36 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=111.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH--HcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccH
Q 008781 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL--AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326 (554)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 326 (554)
.++|.+++.....+...+..-+.+|.++..+.|. +.+. -..++|.|++.|.-++..++..+..++.-+....+...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 5788888888866777777888888888766554 2333 24678888899998899999999999888875444433
Q ss_pred HHHHHcCCHHHHHHHhCCCC---HHHHHHHHHHHHHHhc-CCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 327 VHIVQRGAVRPLIEMLQSPD---VQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 327 ~~~~~~~~~~~L~~~l~~~~---~~v~~~a~~~L~~L~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
..-+ .-++|.++.+-.+++ ..+|..|+.+|..|.+ -+...-......++..|...|.++.--||..|..+-.+.
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 3222 236777777766654 5799999999999998 555555556677888899999988888999888875554
No 183
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.96 E-value=1.4 Score=47.59 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=134.7
Q ss_pred HHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc----CCC----HHHH
Q 008781 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTD----TKVQ 224 (554)
Q Consensus 153 i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~v~ 224 (554)
+.+.|++..++.++.........+ ++....+..|...|. -+.+|..+...++++.|++.+. ... ..+.
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~---~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGR---ELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcH---HHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 456789999999998755422221 666677777777666 6888999999999999998774 333 5666
Q ss_pred HHHHHHHHHhccCCccc-hH---HHHhc--------CCHHHHHHhhcC----CCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 225 RAAAGALRTLAFKNDEN-KN---QIVEC--------NALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 225 ~~a~~~L~~l~~~~~~~-~~---~~~~~--------~~~~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
+..+.++..+....... .. ..... .-+..|++.+.+ .++.+....+++|.+|+.++++..+.++
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv 268 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV 268 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence 66666666665421110 00 00111 125566666654 3688999999999999999887655554
Q ss_pred HcCCHHHHHHHhc--cCChHHHHHHHHHHHHHhcCC------cccHHHHHHcCCHHHHHHHhCCC--------CHH----
Q 008781 289 AAGALQPVIGLLS--SCCSESQREAALLLGQFAATD------SDCKVHIVQRGAVRPLIEMLQSP--------DVQ---- 348 (554)
Q Consensus 289 ~~~~l~~L~~lL~--~~~~~~~~~a~~~L~nl~~~~------~~~~~~~~~~~~~~~L~~~l~~~--------~~~---- 348 (554)
+. +...+.+=. .....--..-+.+++.++..- ...+..+++.|++...+.++... +++
T Consensus 269 ~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~ 346 (802)
T PF13764_consen 269 EH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF 346 (802)
T ss_pred HH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence 31 222222211 111111122345555555321 34567788999999888888631 122
Q ss_pred ----HHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHH
Q 008781 349 ----LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK 381 (554)
Q Consensus 349 ----v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ 381 (554)
....++..|.-|+.+......+...++++.+-.
T Consensus 347 l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~ 383 (802)
T PF13764_consen 347 LSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHR 383 (802)
T ss_pred hcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHH
Confidence 234678888888877654444455566644333
No 184
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.92 E-value=0.63 Score=44.74 Aligned_cols=180 Identities=20% Similarity=0.198 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHH--hCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-C-C-hhhHH
Q 008781 77 RAAAKRATHVLAELAKNEEVVNWIV--EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-K-PEHQQ 151 (554)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-~-~~~~~ 151 (554)
...+..++..+.++....-....+. ....++.+.+.++.+.. +=+..|+++++-++ . + .+...
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHHhhhcCCCccHH
Confidence 4577888998888776322222222 23467788888887765 44557888888888 3 2 22233
Q ss_pred HHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhh---cCchhHHHHHhcCChHHHHHh--hc---------
Q 008781 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLVEL--LE--------- 217 (554)
Q Consensus 152 ~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~~~~~~i~~L~~l--l~--------- 217 (554)
.+.+ ...|.|.+.+.+..... .++..|+.+|+-++. .++..-. .....+..+... .+
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~------~~R~~~~~aLai~~fv~~~d~~~~~--~~~~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASP------KARAACLEALAICTFVGGSDEEETE--ELMESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccch------HHHHHHHHHHHHHHHhhcCChhHHH--HHHHHHHHHHHHHhcCcCCCccccc
Confidence 3332 45788888888765432 565666666666654 1211111 001122211111 11
Q ss_pred -CCCHHHHHHHHHHHHHhccCCccc-hHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 218 -FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 218 -~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
.+++.+...|+.+-.-|...-+.. ..... ...++.|..+|.+++.+||..|..+|.-|..
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 123567777777666665433332 22222 3468999999999999999999999987743
No 185
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.88 E-value=0.17 Score=50.51 Aligned_cols=163 Identities=14% Similarity=0.149 Sum_probs=117.3
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (554)
...++.+.+.+. +...+..|+..|..++.++.....++...++..|.+++.++..-.+. ++...++
T Consensus 84 ~a~~i~e~l~~~------~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~--------~~L~~~L 149 (713)
T KOG2999|consen 84 YAKRIMEILTEG------NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSS--------ELLSTSL 149 (713)
T ss_pred HHHHHHHHHhCC------CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHH--------HHHHHHH
Confidence 345566666555 44566779999999999999999999999999999999987653222 7777788
Q ss_pred HHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 008781 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (554)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (554)
.++..+-...-..-..+...++.....+.+....+. .+...|+..|-++...+...+..+.+.--+..|+..+.
T Consensus 150 ~af~elmehgvvsW~~~~~~fV~~~a~~V~~~~~~a------~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq 223 (713)
T KOG2999|consen 150 RAFSELMEHGVVSWESVSNDFVVSMASYVNAKREDA------NTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ 223 (713)
T ss_pred HHHHHHHhhceeeeeecccHHHHHHHHHHhhhhhcc------cchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH
Confidence 877776622111111222334455555553332222 77788999999999877778888888889999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCcc
Q 008781 218 FTDTKVQRAAAGALRTLAFKNDE 240 (554)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~ 240 (554)
..+..++..|...+..+....++
T Consensus 224 ~~n~~i~~~aial~nal~~~a~~ 246 (713)
T KOG2999|consen 224 VSNQRIQTCAIALLNALFRKAPD 246 (713)
T ss_pred hcchHHHHHHHHHHHHHHhhCCh
Confidence 99999998888877777654443
No 186
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.72 E-value=1.2 Score=41.56 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=145.0
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccc----hHHHHh-cCCHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 008781 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVE-CNALPTLILMLRSE-DSAIHYEAVGVIGN 275 (554)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~-~~~~~~L~~ll~~~-~~~v~~~a~~~L~~ 275 (554)
.+...|.++.++..+...+-+.+..++.+..++....... .+.+.. ..++..|+.- .. .+++...+-..|..
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHH
Confidence 3566788999999998888888888888888887533322 222222 2233333333 22 35666666666666
Q ss_pred HhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCC----HHHHHHHhCCCCHHHHH
Q 008781 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA----VRPLIEMLQSPDVQLRE 351 (554)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~----~~~L~~~l~~~~~~v~~ 351 (554)
...+ +...+.+..+.-+.....+++.+.-++...|..+...+..........+...+. .+.--.++.+.+.-++.
T Consensus 152 cirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 152 CIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 5544 666688888888999999999988899999998888876554444444554433 33355567789999999
Q ss_pred HHHHHHHHHhcCCCcchhh----hhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc
Q 008781 352 MSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 352 ~a~~~L~~L~~~~~~~~~l----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
.+...|+.+..+..|...+ .+...+..++.+|.+++..+|..|-....-...++..
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 9999999999888776543 3346688899999999999999999998888776543
No 187
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.37 Score=50.83 Aligned_cols=212 Identities=17% Similarity=0.142 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (554)
.++-.++..|..+....+....+...+++...+..|++.++ -+.-.|+..+..||.-. ...++|
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcevy--------~e~il~ 805 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEVY--------PEDILP 805 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHhc--------chhhHH
Confidence 67888999999998544666778888999999999999887 77788999888999743 345677
Q ss_pred HHHHhh-cC---CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 211 PLVELL-EF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 211 ~L~~ll-~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
.+.+.- .. ..++.+...-.++.++...-.+....... -++..+++..++++...|..++..+++++.-.......
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 777733 22 11344444556666665432222222222 35677888888888889999999999998643322222
Q ss_pred HHHcCCHHHHHHHhc-cCChHHHHHHHHHHHHHhcCCcccHHHHH---HcCCHHHHHHHhCC-CCHHHHHHHHHHHHHH
Q 008781 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQS-PDVQLREMSAFALGRL 360 (554)
Q Consensus 287 ~~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~---~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L 360 (554)
.+ ...+..++.+.+ ++..-+++.|+..+..+-.+...-...+. -.+....+...... ++..++..++.++-.+
T Consensus 885 ~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 885 FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 11 124444555554 45678889999888888654332111111 22334445555553 3444555555555443
No 188
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.63 E-value=0.02 Score=33.51 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=26.1
Q ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 008781 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 334 ~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
++|.++++++++++.+|..|+.+|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999999763
No 189
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.63 E-value=0.18 Score=44.41 Aligned_cols=125 Identities=16% Similarity=0.220 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHc----------------CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhh
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDN----------------GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~----------------g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 194 (554)
.....++.+|+|++..++....+++. .++..|+..+.......... .+-....+.++.|++.
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~--~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNK--KDNYDYLASVLANLSQ 87 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCC--CcchhHHHHHHHHhcC
Confidence 45668899999999666665544432 25677777776621111111 1677899999999998
Q ss_pred cCchhHHHHHhcC--C--hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHh---cCCHHHHHHhhc
Q 008781 195 ENSSIKTRVRMEG--G--IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE---CNALPTLILMLR 259 (554)
Q Consensus 195 ~~~~~~~~~~~~~--~--i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~ll~ 259 (554)
.+..|..+.... . +..|+.++.+.+..-|.-++.+|.|+|.+ ......+.. .++++.|+--|.
T Consensus 88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd-~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD-TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred -CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc-HhHHHHhcCchhhhhHHHHHhhcc
Confidence 777788877643 3 67788888888777788899999999984 444444443 355665554443
No 190
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=1.9 Score=45.08 Aligned_cols=132 Identities=20% Similarity=0.185 Sum_probs=92.3
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHH-hcCCChhHHHHHHHHHHHcccCCcchhHH
Q 008781 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADF 411 (554)
Q Consensus 333 ~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 411 (554)
+.=+.+-+++.+.++-+|.....++.---.+.. ++++|..|+.. .++.+.+|+++|..+|+-++...+.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---- 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---- 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh----
Confidence 344555667778888888887777654322222 23456666666 5678899999999999988654432
Q ss_pred HhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHH-hhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCc
Q 008781 412 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG 490 (554)
Q Consensus 412 ~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 490 (554)
.++..+.+| .+-++-||.-++.+|+-.|.+...+..
T Consensus 589 -------------------------------------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------ 625 (929)
T KOG2062|consen 589 -------------------------------------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------ 625 (929)
T ss_pred -------------------------------------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------
Confidence 145666666 457999999999999999988765543
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHH
Q 008781 491 LELLLGLLGSTNPKQQLDGAVALFKLA 517 (554)
Q Consensus 491 l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (554)
+..|..+..++..-||.-|.-++.-+.
T Consensus 626 i~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 626 INLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 456666677777778887777776554
No 191
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.32 E-value=0.18 Score=43.09 Aligned_cols=147 Identities=21% Similarity=0.216 Sum_probs=97.2
Q ss_pred CChHHHHHhhcC--CCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHH
Q 008781 104 GAVPALVKHLQA--PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (554)
Q Consensus 104 g~v~~Lv~lL~~--~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (554)
..++.++..|.. .+. ++|.+++-++..+- +..++... .-+-..+-.++..... +-
T Consensus 3 ~~l~~lL~~L~~~~~~~------------~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~~--------d~ 59 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPE------------EVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGEM--------DS 59 (157)
T ss_dssp CCCCHHHHHHHCTTTSC------------CHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHHC--------CH
T ss_pred HHHHHHHHHhcccCCCH------------hHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHccccc--------hh
Confidence 345666666654 233 88999999998884 22222221 1122334444444443 56
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHh-cCChHHHHHhhc--CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh
Q 008781 182 IRRAADAITNLAHENSSIKTRVRM-EGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (554)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~-~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (554)
...++.++..+....++....+.. .|..+.++.++. +.+..++..++.+|..-|. ++.....+...+++.|-...
T Consensus 60 ~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~ 137 (157)
T PF11701_consen 60 LIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELY 137 (157)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHH
Confidence 667888888888877777666654 677788999998 7888999999999998885 44444544455799999999
Q ss_pred c-CCCHH-HHHHHHHHHHH
Q 008781 259 R-SEDSA-IHYEAVGVIGN 275 (554)
Q Consensus 259 ~-~~~~~-v~~~a~~~L~~ 275 (554)
+ ++++. ++..|+-.|..
T Consensus 138 ~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 138 KNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp TTCC-HH-CHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhc
Confidence 6 45555 67777766653
No 192
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.30 E-value=0.039 Score=32.26 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=26.0
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 491 LELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 491 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
+|.+.+++.+++++||..|+.+|..++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999875
No 193
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.25 E-value=0.49 Score=45.40 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=113.2
Q ss_pred CChHHHH-HhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh-h-h
Q 008781 207 GGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-N-I 283 (554)
Q Consensus 207 ~~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~-~ 283 (554)
+.+..++ ..+++.++.+|..++.||+-.+.-+..... ..++.+...+..++..++..|+.++..+..... . .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3444444 567889999999999999999874432221 236677777777799999999999998864211 1 1
Q ss_pred HHH------HHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHH-hC---CCCHHHHHHH
Q 008781 284 KKE------VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQ---SPDVQLREMS 353 (554)
Q Consensus 284 ~~~------~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~-l~---~~~~~v~~~a 353 (554)
... .....++..+.+.+.+.+++++..++..++.|.-.+.-.- ...++..|+-. .. .++..+|..-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 111 1224577888888988899999999999999864432221 12233333332 22 2456888888
Q ss_pred HHHHHHHhcCCCcchhhhhcCCHHHHHHHhcC
Q 008781 354 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 385 (554)
Q Consensus 354 ~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~ 385 (554)
..++-..+.........+...+++.+..++..
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888766655556666677777766644
No 194
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.20 E-value=1.6 Score=43.09 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=103.6
Q ss_pred HHHHHHHH-HHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh
Q 008781 180 SVIRRAAD-AITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (554)
Q Consensus 180 ~~~~~a~~-~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 257 (554)
+-+..|+. +..-+|.+....-.+. ...++..+++.+.+ .++..+..|++.|..++...+..-..-. .-++..+++.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst-E~ai~K~Lea 379 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST-EIAICKVLEA 379 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH-HHHHHHHHHH
Confidence 45556666 4444454322221111 12345677777876 6788999999999999974332211111 1235555666
Q ss_pred hcCCCHHHHHHHHH-HHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHH
Q 008781 258 LRSEDSAIHYEAVG-VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (554)
Q Consensus 258 l~~~~~~v~~~a~~-~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~ 336 (554)
-.+..+++...|.. |+.-+++..+.. .+..+..++.+.+.+....++.++..+...-..-....+-.++.|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 66666666555554 455555555554 233344555555566666666677777632222112223367889
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 337 PLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 337 ~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
.+++.-.+.+..+|..++.+|..+..
T Consensus 452 ~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 99999999999999999999998864
No 195
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.19 E-value=0.14 Score=52.82 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=127.5
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhh
Q 008781 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (554)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (554)
...+++|.|+++++..|..+|..-+.-+-.... .....+++..++|.+..-+.+.++.+|..++.++..|+..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 456789999999999999999866655555442 334456677899999999999999999999999999875321
Q ss_pred HHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 008781 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
...+....+..+..+-.+.+..++....-||+.++..... .....-....+...++++-...|.++.++++.....
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred -hhhhcHHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 2233334555555555566778888888888888643211 122222344555667777777888888888776654
Q ss_pred CCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 364 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
.+... +...+++.+.-+.-+++..++..|-.++...
T Consensus 478 ~~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 478 FDQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred cchhh--hhhhccccccccccCcccchhhHHHHHHHHH
Confidence 33322 2344666777777777777777777766554
No 196
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.19 E-value=5.6 Score=42.78 Aligned_cols=219 Identities=15% Similarity=0.065 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
.+...+.++++..+ ..+.+...+- ..+...++.+..+... .++..|+.+++..|.... . .-...+++
T Consensus 465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~-------~~ki~a~~~~~~~~~~~v-l--~~~~p~il 532 (1005)
T KOG2274|consen 465 FLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPP-------PVKISAVRAFCGYCKVKV-L--LSLQPMIL 532 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCC-------chhHHHHHHHHhccCcee-c--cccchHHH
Confidence 55557888888776 3222211111 1233344444444332 667777777777773211 1 11234566
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
..|+++....+.++......+|+..+.-+++.. ...+..+.|.++.++. ++++.+...+-.++..++.. ..+ .--
T Consensus 533 d~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~-~g~ 609 (1005)
T KOG2274|consen 533 DGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AAN-YGP 609 (1005)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHh-hcc
Confidence 777777777788888889999999997555543 3445567777777654 66777777777777777542 222 222
Q ss_pred HHcCCHHHHHHHhccCC----hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh-CCCCHHHHHHHHHHHHHHhc
Q 008781 288 LAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 288 ~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~L~~ 362 (554)
.....+|.+++.|.... ....--++..|.-+....+.-.....-.-++|++.+.. .++|..+..++..+|..+..
T Consensus 610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 23458999999998765 44455556666656555444333333334567776664 46777888889999988876
Q ss_pred CC
Q 008781 363 DM 364 (554)
Q Consensus 363 ~~ 364 (554)
..
T Consensus 690 ~~ 691 (1005)
T KOG2274|consen 690 VT 691 (1005)
T ss_pred cC
Confidence 53
No 197
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.13 E-value=7.9 Score=44.21 Aligned_cols=143 Identities=15% Similarity=0.249 Sum_probs=96.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHH
Q 008781 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (554)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 328 (554)
+.+..++..+..+...+|..|++||.++...++.. +....+-..+..-+.+....|++.|+..++......++....
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 45778888888888999999999999998765543 222234445556667777889999999999876555554332
Q ss_pred HHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 329 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
....+.+-+.++...||..++..++.+|...++-..+.+ ....+++-.+++...++..++.++.++
T Consensus 893 -----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 893 -----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred -----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 234555666677888999999999999876655433322 222233333444455666666666665
No 198
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.11 E-value=2.6 Score=45.40 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=112.6
Q ss_pred HHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHH--HHHHHhcCC-Chh
Q 008781 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV--PLLKLLDSK-NGS 389 (554)
Q Consensus 314 ~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~--~L~~ll~~~-~~~ 389 (554)
+|.+++...++....+.+.+++..+...++. ....++..+++.+.|++...+.+..+.....+. .+..++..- +.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888888888888999999999999999985 566889999999999997665554433222222 333344333 347
Q ss_pred HHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHH--------HHhhchHHH-HHHHHhh-
Q 008781 390 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE--------KIHGRVLNH-LLYLMRV- 459 (554)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~l~~-L~~ll~~- 459 (554)
....++.+|..+..+.+.. ...+ .++|+...+...-. ......+.. +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~---~~~~--------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKT---TECV--------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCcC---cccc--------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 8888999999987654430 0000 01111111111000 011112222 4444543
Q ss_pred CCHHHHHHHHHHHHhhcCC-chhhHHHHHcCcHHHHHHhhCCC-ChhHHHHHHH
Q 008781 460 AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAV 511 (554)
Q Consensus 460 ~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~ 511 (554)
..+..+..|++++.+++.. ++....+.+.++++.+.+.-... ...++..+..
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL 690 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence 5678899999999999765 44777788888988888765532 3344444433
No 199
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.00 E-value=0.13 Score=45.27 Aligned_cols=126 Identities=18% Similarity=0.144 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcchhhhh----------------cCCHHHHHHHhcC------CChhHHHHHHHHHHHc
Q 008781 344 SPDVQLREMSAFALGRLAQDMHNQAGIAH----------------NGGLVPLLKLLDS------KNGSLQHNAAFALYGL 401 (554)
Q Consensus 344 ~~~~~v~~~a~~~L~~L~~~~~~~~~l~~----------------~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l 401 (554)
+++......++..|.|+++.......+.. ...+..|++++.. ....-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 44455666778888888876655543221 2246667776644 2345567788999999
Q ss_pred ccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchh
Q 008781 402 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ 481 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 481 (554)
+..++.+..|++..--. ..+..|+.+..+.+..-|.-++.+|.|+|...+.
T Consensus 86 S~~~~gR~~~l~~~~~~-----------------------------~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~ 136 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYD-----------------------------GPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS 136 (192)
T ss_pred cCCHHHHHHHhCchhhh-----------------------------hHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence 99999998888753110 0267888888888888888999999999999887
Q ss_pred hHHHHHc---CcHHHHHHhh
Q 008781 482 RTIFIDG---GGLELLLGLL 498 (554)
Q Consensus 482 ~~~~~~~---~~l~~L~~ll 498 (554)
...+... +.++.|+.-+
T Consensus 137 H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 137 HEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHhcCchhhhhHHHHHhhc
Confidence 7666664 4455444333
No 200
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.95 E-value=0.4 Score=49.61 Aligned_cols=229 Identities=14% Similarity=0.109 Sum_probs=149.7
Q ss_pred HHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCcccc
Q 008781 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (554)
Q Consensus 97 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~ 176 (554)
...++..-+++.|+..+.-++.. .-...-+..++..-+.++ ...+++|.|+++++..+.
T Consensus 286 pe~i~~~kvlp~Ll~~~~~g~a~-----------~~~ltpl~k~~k~ld~~e-----yq~~i~p~l~kLF~~~Dr----- 344 (690)
T KOG1243|consen 286 PEEIIASKVLPILLAALEFGDAA-----------SDFLTPLFKLGKDLDEEE-----YQVRIIPVLLKLFKSPDR----- 344 (690)
T ss_pred hHHHHHHHHHHHHHHHhhccccc-----------hhhhhHHHHhhhhccccc-----cccchhhhHHHHhcCcch-----
Confidence 33445555677777666655421 111233333444443444 456788999999998876
Q ss_pred chhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHH
Q 008781 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256 (554)
Q Consensus 177 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 256 (554)
.+|...+.-+-++.. .....+....+.|.+..-+.+.++.++..++.++..++.. -+.+ ......+..+-+
T Consensus 345 ---~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k--L~~~-~Ln~Ellr~~ar 415 (690)
T KOG1243|consen 345 ---QIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK--LSKR-NLNGELLRYLAR 415 (690)
T ss_pred ---HHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh--hchh-hhcHHHHHHHHh
Confidence 677666665555543 3344567788999999999999999999999999988752 2222 223334556665
Q ss_pred hhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHH
Q 008781 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (554)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~ 336 (554)
+-.+++..+|.+..-||+.++....... ...-....+..-++++-...+..+.+++...... .-..-+...++|
T Consensus 416 ~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~---~~~~~va~kIlp 489 (690)
T KOG1243|consen 416 LQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY---FDQSEVANKILP 489 (690)
T ss_pred hCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc---cchhhhhhhccc
Confidence 5557788999999999999976532221 2222344556667777777888888887766432 222234456788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 337 PLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 337 ~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
.+..+..+++..+|..+-.++...-
T Consensus 490 ~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 490 SLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cccccccCcccchhhHHHHHHHHHH
Confidence 8888888888888888777776654
No 201
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.94 E-value=0.16 Score=36.47 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 008781 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (554)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g 157 (554)
.+.|+|++.+++.++.....+.+.++++.++++....+.- .+|-.|..+|+-++.+.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~-----------siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL-----------SIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc-----------chHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4578999999999988888888899999999999876542 899999999999998888887777655
No 202
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.77 E-value=0.34 Score=52.95 Aligned_cols=163 Identities=19% Similarity=0.218 Sum_probs=121.8
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (554)
..|.++.+.+.+.. +.+|+++..|.-+|+++. -+.++. ...+|.|+..+.....+ -++.
T Consensus 920 f~piv~e~c~n~~~--------~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p-------~IRs 979 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--------FSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSP-------RIRS 979 (1251)
T ss_pred HHHHHHHHhcCCCc--------CCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCc-------eeee
Confidence 56667777765543 335799999999999998 555442 34579999999865543 7888
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCH
Q 008781 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (554)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 263 (554)
++.-+++.++...|..- ...-+.|...|.+.++.+|..|...|.+|... ..+.-.|.+..+...+.++++
T Consensus 980 N~VvalgDlav~fpnli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred cchheccchhhhccccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcH
Confidence 89999999987666543 23457899999999999999999999999862 344457899999999999999
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC
Q 008781 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (554)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (554)
.++..|=..+..|+.... .+. +++|-++.-|.++
T Consensus 1050 ~IsdlAk~FF~Els~k~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1050 EISDLAKSFFKELSSKGN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHHHhhhccc----chh--hhchHHHHhhccC
Confidence 999999988888865431 111 3555555555554
No 203
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.73 E-value=1.3 Score=45.94 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (554)
.+.+.++..+..+-..+.+.- .-.+.+..+++...+++..||..++..|..+.....+.-+.+. .++...+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D---lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED---LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh---HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHh
Confidence 555555555555544333221 2246667777777888999999999999999863332222222 356677777788
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-cCChHHHHHHHHHHHH
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQ 317 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~n 317 (554)
+..+.||..|+.+|..+-....+- +..++..+..+++ ++++++++.+...+.+
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 999999999999999995321111 1235667777776 5678999987665544
No 204
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.67 E-value=0.19 Score=42.91 Aligned_cols=146 Identities=19% Similarity=0.183 Sum_probs=97.3
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHH
Q 008781 251 LPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (554)
Q Consensus 251 ~~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 328 (554)
++.++..|. ...+++|..+.-++..+- +..++. ...-+-+.+-.++.....+....+..++..+-...++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 445555444 457788999988888873 222222 22223444555555555667778888888887666665554
Q ss_pred HH-HcCCHHHHHHHhC--CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc-CCChh-HHHHHHHHHHHc
Q 008781 329 IV-QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGS-LQHNAAFALYGL 401 (554)
Q Consensus 329 ~~-~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~a~~~L~~l 401 (554)
+. ..|+++.++.++. ..+..++..++.+|..-|.+. .++..+...+++-|-+... +++.. ++..|+-+|..+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 44 6789999999998 678888888888888777654 4444555568888888884 55555 788877777653
No 205
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.58 Score=47.09 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=98.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 008781 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (554)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 291 (554)
-+++.+.++-+|......+..--. ... ..|++..+++. ..+.+.+||+.|+-+|+-++..+++
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~-GTg------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYV-GTG------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHh-cCC------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 344555555566555444332211 111 24677788876 6678999999999999999877554
Q ss_pred CHHHHHHHhc-cCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhh
Q 008781 292 ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 370 (554)
Q Consensus 292 ~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l 370 (554)
.+...+++|. +.++.++...+.+|+-.|++.-+.. ++..|-.++.+++..+|+.|+-+++-+......+---
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 4555666665 4578899888999998886644332 3455666777888899999999998876432222111
Q ss_pred hhcCCHHHHHHHhcCCCh
Q 008781 371 AHNGGLVPLLKLLDSKNG 388 (554)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~ 388 (554)
--.+++..+.+++..++.
T Consensus 659 ~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 659 NVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred hHHHHHHHHHHHHhhhhH
Confidence 123455666677665543
No 206
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=0.56 Score=51.36 Aligned_cols=163 Identities=16% Similarity=0.134 Sum_probs=115.9
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcc
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAF 236 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 236 (554)
..|.++...+++...++ ++++..|.-+|+.++.-+..+ + ...+|.|+..+. ++++.+|..+.-+++-++.
T Consensus 920 f~piv~e~c~n~~~~sd----p~Lq~AAtLaL~klM~iSa~f----c-es~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSD----PELQAAATLALGKLMCISAEF----C-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHhcCCCcCCC----HHHHHHHHHHHHHHhhhhHHH----H-HHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 34556666655443332 289999999999998744443 2 235788888886 7899999999999988876
Q ss_pred CCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHH
Q 008781 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (554)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 316 (554)
.-+.. ++. .-+.|...|+++++.||+.|+.+|.+|... ..+--.|-+.-+..++.+++.+++.-|=..+-
T Consensus 991 ~fpnl----ie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 991 RFPNL----IEP-WTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred hcccc----cch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 43322 222 457888999999999999999999999643 34445789999999999999988777766666
Q ss_pred HHhcCCcccHHHHHHcCCHHHHHHHhCCC
Q 008781 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (554)
Q Consensus 317 nl~~~~~~~~~~~~~~~~~~~L~~~l~~~ 345 (554)
.|+..+... .+++|-++.-|.++
T Consensus 1061 Els~k~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1061 ELSSKGNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred Hhhhcccch------hhhchHHHHhhccC
Confidence 665433111 34566666666654
No 207
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.21 E-value=0.12 Score=37.24 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHHcccCCcchhHHHhhC
Q 008781 350 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVG 415 (554)
Q Consensus 350 ~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 415 (554)
.+.++|++++++..+.....+.+.+.++.++++.. ++...+|-.|.++|.-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 46899999999987766666777789999999886 4568999999999999999888777666554
No 208
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.18 E-value=0.9 Score=40.09 Aligned_cols=151 Identities=12% Similarity=0.105 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHH
Q 008781 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVD 155 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~ 155 (554)
.-...|+..|.-++++|+.+..+.++.+--.+-++|...+.+. +|+ -+|..++..++.+. ++++....+..
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~------~fE-yLRltsLGVIgaLvkNdsq~vi~fLlt 187 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNS------KFE-YLRLTSLGVIGALVKNDSQYVIKFLLT 187 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCC------ccc-eeeehHHHHHHHHHhCCCHHHHHHHHh
Confidence 3567888888889999999999999998888888887655421 111 68889999999999 55666677778
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHH------HH-hcCChHHHHH-hhcCCCHHHHHHH
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR------VR-MEGGIPPLVE-LLEFTDTKVQRAA 227 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~------~~-~~~~i~~L~~-ll~~~~~~v~~~a 227 (554)
..++|..++++...+. --+..++.++..+..++...+-. |. ....+..++. +...+...+.+.+
T Consensus 188 TeivPLcLrIme~gSE--------lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~ 259 (315)
T COG5209 188 TEIVPLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHA 259 (315)
T ss_pred hhHHHHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8999999999987765 55556666766665544332211 10 0112222222 2334556677777
Q ss_pred HHHHHHhccCCccchHH
Q 008781 228 AGALRTLAFKNDENKNQ 244 (554)
Q Consensus 228 ~~~L~~l~~~~~~~~~~ 244 (554)
+++-..++. ++..+..
T Consensus 260 iRcYlRLsd-~p~aR~l 275 (315)
T COG5209 260 IRCYLRLSD-KPHARAL 275 (315)
T ss_pred HHHheeecC-CHhHHHH
Confidence 777777775 4444433
No 209
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.17 E-value=1.2 Score=45.75 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
..+..|+..+.... .-|+..+. ++..+++++.+.+. .++..|+..|-.+|.++++.-..+ .
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~--------~iR~~aik~lp~~ck~~~~~v~kv-----a 98 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDV--------QIRKQAIKGLPQLCKDNPEHVSKV-----A 98 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSH--------HHHHHHHHHGGGG--T--T-HHHH-----H
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH--------HHHHHHHHhHHHHHHhHHHHHhHH-----H
Confidence 78888888888888 77777544 35778888888776 999999999999999877665554 4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc---CCCHHHHHHHHHHHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR---SEDSAIHYEAVGVIGNL 276 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~a~~~L~~L 276 (554)
..|+++|.++++.....+-.+|..+...++. +.+..+...+. ++++.+|..++..|..=
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 5899999998887777777777777653322 22334443333 56777888888877543
No 210
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.16 E-value=4.7 Score=40.77 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=113.4
Q ss_pred HHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHH
Q 008781 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (554)
Q Consensus 107 ~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~ 186 (554)
..+.+++.+++. .-+..+..-|..++.++.+...++...++..|.+++.+...-... ++...++
T Consensus 86 ~~i~e~l~~~~~------------~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~----~~L~~~L 149 (713)
T KOG2999|consen 86 KRIMEILTEGNN------------ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSS----ELLSTSL 149 (713)
T ss_pred HHHHHHHhCCCc------------HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHH----HHHHHHH
Confidence 455677777776 667779999999999999999999999999999999887552111 6777777
Q ss_pred HHHHHHhhcCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHH
Q 008781 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 264 (554)
Q Consensus 187 ~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 264 (554)
.++..+..+.- +.-......++.....+.+ ..+..+...|+..|-++..+++.....+.+.--+..|+..+...+..
T Consensus 150 ~af~elmehgv-vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~ 228 (713)
T KOG2999|consen 150 RAFSELMEHGV-VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQR 228 (713)
T ss_pred HHHHHHHhhce-eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchH
Confidence 77777665332 1111112233333344432 34567888899999999887777777778888899999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 008781 265 IHYEAVGVIGNLVHS 279 (554)
Q Consensus 265 v~~~a~~~L~~L~~~ 279 (554)
+...|...+-.+...
T Consensus 229 i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 229 IQTCAIALLNALFRK 243 (713)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999888888777654
No 211
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.02 E-value=4.9 Score=36.95 Aligned_cols=196 Identities=19% Similarity=0.118 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHHhccCh-hhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 008781 75 ADRAAAKRATHVLAELAKNE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (554)
.++..+...+..|..++.+. .....+ +..|..+...+.. +.+..+.+.+..+. .++..-
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~------------~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSL------------ELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCch------------hHHHHHHHHHHHHHHhCchHH--
Confidence 46678889999999999865 333332 5666667766665 55566777777777 443221
Q ss_pred HHHcCChHHHHHH--HhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHH
Q 008781 153 IVDNGALSHLVNL--LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAG 229 (554)
Q Consensus 153 i~~~g~l~~L~~l--L~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~ 229 (554)
+.+..++.. ++...........++........+..+|...|+ .-...++.+..++ ++.++.++..++.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 334444433 111111111223346666667899999987776 2234567888888 7888899999999
Q ss_pred HHHHhccCCccchHHHHh-cCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhh-HHHHHHcCCHHHHHHHhccCC
Q 008781 230 ALRTLAFKNDENKNQIVE-CNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCC 304 (554)
Q Consensus 230 ~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~lL~~~~ 304 (554)
+|..++.. .+++ ......+.+-+. +..+.+....+..+..+....-+. ........++..+.++..+.+
T Consensus 145 ~l~~Lc~~------~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 145 ALAPLCEA------EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHH------hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 99999942 1221 122444444444 234555554444444433221111 122223344555555554444
No 212
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.91 E-value=2.1 Score=44.73 Aligned_cols=232 Identities=14% Similarity=0.061 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (554)
.=+-.-...|.++. +++-..+....++|.|+..+.+. .++-..+..+..+....+.. ......+|
T Consensus 288 ~qKs~Flk~Ls~~i--p~fp~rv~~~kiLP~L~~el~n~----------~~vp~~LP~v~~i~~~~s~~---~~~~~~~p 352 (700)
T KOG2137|consen 288 SQKSSFLKGLSKLI--PTFPARVLFQKILPTLVAELVNT----------KMVPIVLPLVLLIAEGLSQN---EFGPKMLP 352 (700)
T ss_pred HHHHHHHHHHHHhh--ccCCHHHHHHhhhhHHHHHhccc----------cccccccchhhhhhhccchh---hhhhhhhH
Confidence 33444455555554 33334455667788888877544 34444455555555433321 22345667
Q ss_pred HHHHhhcCCCH-HHHHHH---HHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 211 PLVELLEFTDT-KVQRAA---AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 211 ~L~~ll~~~~~-~v~~~a---~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
.|...++.+++ .+..-. +.+|.+-. ..+. ....+++.|..-+.+.+..++..++..+...+..-+ -.
T Consensus 353 ~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt-----~~e~-~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~ 423 (700)
T KOG2137|consen 353 ALKPIYSASDPKQALLFILENMDLLKEKT-----PPEE-VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VP 423 (700)
T ss_pred HHHHHhccCCcccchhhHHhhHHHHHhhC-----ChHH-HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HH
Confidence 77777764322 222111 12222222 1222 234578888888889999999999999999875433 34
Q ss_pred HHHcCCHHHHHHHh-ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC
Q 008781 287 VLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (554)
Q Consensus 287 ~~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~ 365 (554)
.+...+++.+..+. ...+..++..++.|+..+. +......-...+..+..-.+..++.+....+.+..++.....
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~ 499 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY 499 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc
Confidence 45556778887774 4556788999999999886 111111112234445555556788998888888888876655
Q ss_pred cchhhhhcCCHHHHHHHhcCCChhH
Q 008781 366 NQAGIAHNGGLVPLLKLLDSKNGSL 390 (554)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v 390 (554)
.+..+....++|.++.+.-.+.-.+
T Consensus 500 ~g~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 500 SGVEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred cceeeehhhhhhhhhhhhhcccccH
Confidence 5555566677888777765554333
No 213
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.74 E-value=1.4 Score=45.97 Aligned_cols=138 Identities=19% Similarity=0.158 Sum_probs=94.8
Q ss_pred HHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHHcccCCcc
Q 008781 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 329 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
-+...++|.|..-+++.+..+++.++..+..++..-+ ...+...+++.|.++. +..+..++.+++.++..+...-+.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 3445688899999999999999999999999886544 3456666777777653 556678888888888887722111
Q ss_pred hhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008781 408 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 487 (554)
Q Consensus 408 ~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 487 (554)
..+++ .+..+....+..+|.+....+++..++.........+..
T Consensus 463 -~~v~d-----------------------------------~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~ 506 (700)
T KOG2137|consen 463 -AAVLD-----------------------------------ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMA 506 (700)
T ss_pred -HHhHH-----------------------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeeh
Confidence 01111 144555666778999988888888888655444344566
Q ss_pred cCcHHHHHHhhCCCChh
Q 008781 488 GGGLELLLGLLGSTNPK 504 (554)
Q Consensus 488 ~~~l~~L~~ll~~~~~~ 504 (554)
.+++|.++.+...+.-.
T Consensus 507 ~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 507 ENVLPLLIPLSVAPSLN 523 (700)
T ss_pred hhhhhhhhhhhhccccc
Confidence 67788888777655433
No 214
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.50 E-value=0.35 Score=42.80 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=67.9
Q ss_pred CChhhHHHHHHcCChHHHHHHHhccccCccc-cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 008781 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS-RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (554)
Q Consensus 145 ~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 223 (554)
......+.+++.||+..|+++|......... ..+.+....++.+|..++.........+...+++..++..+.+++..+
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 4446677888999999999999765332111 123378888999999999866666666666889999999999999999
Q ss_pred HHHHHHHHHHhc
Q 008781 224 QRAAAGALRTLA 235 (554)
Q Consensus 224 ~~~a~~~L~~l~ 235 (554)
+..++..|..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 215
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.48 E-value=4.6 Score=40.02 Aligned_cols=198 Identities=12% Similarity=0.073 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc
Q 008781 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 384 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~ 384 (554)
+-++.|..-|..+...+......-.-..++..+++.|.+ .+...+..|+..|..++.+...+-.=...-++..+++.-.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 445555554444433332211111112355667777876 7788999999999999976544321111123455566656
Q ss_pred CCChhHHHHHHH-HHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHH
Q 008781 385 SKNGSLQHNAAF-ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG 463 (554)
Q Consensus 385 ~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~ 463 (554)
+.+..+...|.. ++..++.+.+... +.-+..++-..+.+
T Consensus 382 ds~~~v~~~Aeed~~~~las~~P~~~----------------------------------------I~~i~~~Ilt~D~~ 421 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASHLPLQC----------------------------------------IVNISPLILTADEP 421 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhhCchhH----------------------------------------HHHHhhHHhcCcch
Confidence 666665555555 4444444433211 22233334445556
Q ss_pred HHHHHHHHHHhhcCCch-hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc--CcCcccccCCCCCCcccccc
Q 008781 464 VQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA--TTLSSVDAAPPSPTPQVRFK 540 (554)
Q Consensus 464 v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~~~~~l~ 540 (554)
.-..++..+..++..-. ..-..+-.+..|.+++-..+....||+.|..+|..+...- +...+..... +..++.|=
T Consensus 422 ~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L--t~sk~~Ll 499 (516)
T KOG2956|consen 422 RAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL--TSSKLNLL 499 (516)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc--cHHHHHHH
Confidence 56666667777765533 2222234567899999999999999999999998887643 2333333322 33344444
Q ss_pred ccccc
Q 008781 541 NGFLH 545 (554)
Q Consensus 541 ~~~~~ 545 (554)
.-|+|
T Consensus 500 qlYin 504 (516)
T KOG2956|consen 500 QLYIN 504 (516)
T ss_pred HHHHH
Confidence 44554
No 216
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.17 E-value=2.7 Score=45.63 Aligned_cols=189 Identities=12% Similarity=0.038 Sum_probs=124.4
Q ss_pred CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCCcchhh
Q 008781 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGI 370 (554)
Q Consensus 292 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~~~~~l 370 (554)
+-+.+-.-+.+.++.-+.+|+..+........ ....-...+.+..++.... +.+..+...++.+|..++..-.....-
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 33445555667889999999998887764433 1111112344444444433 567778888888888888643322222
Q ss_pred hhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchH
Q 008781 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (554)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 450 (554)
...+..+.+++.+......++..+..++-.++..... ..+.
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l---------------------------------------~~~~ 373 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL---------------------------------------SKMS 373 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH---------------------------------------HHHH
Confidence 3346778888888888888888777777666542111 1136
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhhcCCch--hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 451 NHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+.+...+++.+|.++......+.......+ ....-.-.+.++.++....+.+.+||..|..++.-+.+..
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 777888999999999987777776643322 1111223346888889999999999999999988777643
No 217
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.16 E-value=13 Score=39.09 Aligned_cols=105 Identities=20% Similarity=0.128 Sum_probs=70.5
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
.|.+..+++...+.+. .||..++.+|..+.+...-.+..+-.+....+..-+.+..+ .++
T Consensus 84 ~~~f~hlLRg~Eskdk------------~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep--------~VR 143 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDK------------KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP--------NVR 143 (892)
T ss_pred HHHHHHHHhcccCcch------------hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc--------hHH
Confidence 4556666666666655 99999999999999644444444445566666666666555 899
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHH
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALR 232 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~ 232 (554)
..|+.+|..+-.+..+- +..+...+..+++. ++++||..|+..+.
T Consensus 144 iqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 144 IQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 99999999986321111 12345677777764 68899996655443
No 218
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.08 E-value=1.5 Score=38.81 Aligned_cols=145 Identities=13% Similarity=0.131 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHH
Q 008781 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPL 212 (554)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~L 212 (554)
..++.+|.-++..|+.+..+++..+--.+-.+|...+...... .++-.++.+++.+...+ +.....+....++|.+
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fE---yLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFE---YLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccc---eeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 3677777777899999999998877656666665544432222 77888999999998744 4556666778999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhc--------CCHHHHHH-hhcCCCHHHHHHHHHHHHHHhccChhh
Q 008781 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--------NALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (554)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~~~~~L~~-ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (554)
++.+..+++--+.-++.++..+.- ++..-+.+... ..+..++. +.........+.++++-..|+.. +..
T Consensus 195 LrIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~a 272 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHA 272 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhH
Confidence 999999888888888888888775 45544443321 12223332 23345667777888887777543 443
No 219
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.07 E-value=1.8 Score=46.95 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLI 153 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i 153 (554)
+..-+.+|++.+.....++. .-.+.|....+..+++....+.. ..+...++.+|..++ ..+.++..
T Consensus 266 ~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN--------~~v~~~aa~~l~~ia~~lr~~~~~~- 333 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDAN--------INVVMLAAQILELIAKKLRPLFRKY- 333 (815)
T ss_pred chHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcc--------hhHHHHHHHHHHHHHHhcchhhHHH-
Confidence 44466788888888776544 12233333333333332211111 177788999999998 33333322
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (554)
..+..+.++.-+..... .++..+..++-.++...+ .....+.+...+++.++.++..+...+..
T Consensus 334 -~~~v~p~lld~lkekk~--------~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 334 -AKNVFPSLLDRLKEKKS--------ELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDR 397 (815)
T ss_pred -HHhhcchHHHHhhhccH--------HHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 33567888888887766 677766666666654222 23456788999999999998887776666
Q ss_pred hccCCc-cchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 234 LAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 234 l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
.....+ .....-.-.++++.++....+.+.+||..|..+++.+..
T Consensus 398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 398 KLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 655333 221122223568888888889999999999999988753
No 220
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=93.01 E-value=8.1 Score=36.34 Aligned_cols=223 Identities=15% Similarity=0.122 Sum_probs=150.2
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChh---h-HHHHHH-cCCHHHHHHHhccCChHHHHHHHHHHHHH
Q 008781 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN---I-KKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQF 318 (554)
Q Consensus 244 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~---~-~~~~~~-~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 318 (554)
.+.+.|.+..++..+..-+-+.+..++.+..++-...-+ . ..++.. ...+..++.--.. .+++...+...|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 456789999999999988888899999888888542221 1 222222 2334444443222 356666666666665
Q ss_pred hcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc-chhhhhcCC----HHHHHHHhcCCChhHHHH
Q 008781 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGG----LVPLLKLLDSKNGSLQHN 393 (554)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~-~~~l~~~~~----l~~L~~ll~~~~~~v~~~ 393 (554)
.+ .+...+.+....-......+++.+.-++...|..+...+...... ..++...+. .+.--.++.++++-++..
T Consensus 153 ir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred Hh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 43 345556677778888889999999889999999999988654332 233333332 333667889999999999
Q ss_pred HHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHH
Q 008781 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 473 (554)
Q Consensus 394 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 473 (554)
+...++.+..+..|...+..- + -+..-+..+..+|+++...+|.+|-....
T Consensus 232 s~kllg~llldr~N~~~M~kY--i---------------------------ss~enLKlmM~llrdkskniQ~eAFhvFK 282 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKY--I---------------------------SSPENLKLMMNLLRDKSKNIQLEAFHVFK 282 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHH--h---------------------------cCHHHHHHHHHHhhCccccchHHHHHHHH
Confidence 999999998887776554431 1 11123678889999999999999999888
Q ss_pred hhcCCch----hhHHHHHcCcHHHHHHhhC
Q 008781 474 HLCSPDD----QRTIFIDGGGLELLLGLLG 499 (554)
Q Consensus 474 ~l~~~~~----~~~~~~~~~~l~~L~~ll~ 499 (554)
-+..++. ....+..+ -+.|++++.
T Consensus 283 vfvAnpnK~q~V~~IL~~N--r~KLl~~l~ 310 (342)
T KOG1566|consen 283 VFVANPNKPQPVRDILVRN--RPKLLELLH 310 (342)
T ss_pred HHhcCCCCCchHHHHHHhC--cHHHHHHHH
Confidence 8855543 34444444 355665554
No 221
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=18 Score=39.93 Aligned_cols=400 Identities=16% Similarity=0.120 Sum_probs=202.0
Q ss_pred HHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHH
Q 008781 63 VNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (554)
Q Consensus 63 v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (554)
+++|...+-.. ++...+.+.+..+..+-. ++++-...-+.--+|.|+.-+...+. .+|...+.+|.
T Consensus 468 vqmLqdiFLka-enkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs------------slqvkiLkilE 534 (2799)
T KOG1788|consen 468 VQMLQDIFLKA-ENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS------------SLQVKILKILE 534 (2799)
T ss_pred HHHHHHHHHHh-cCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh------------HHHHHHHHHHH
Confidence 45554433221 244577788888887655 78888888888899999988887776 77776666664
Q ss_pred Hhc---CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 008781 142 LLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (554)
Q Consensus 142 ~l~---~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (554)
--. ..--.++ +-.|+-+|+.+-.. .+....+.....|..-+...+..+++.|.+..|...++.
T Consensus 535 yAVtvvncvPeqE-------LlSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkq 600 (2799)
T KOG1788|consen 535 YAVTVVNCVPEQE-------LLSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQ 600 (2799)
T ss_pred HHHhhhccCcHHH-------HHHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 322 1111111 22344455544331 455555555555555466667777777777777655541
Q ss_pred ------CC------------------------------------------H--HH---HHHHHHHHHHhccCCccchHHH
Q 008781 219 ------TD------------------------------------------T--KV---QRAAAGALRTLAFKNDENKNQI 245 (554)
Q Consensus 219 ------~~------------------------------------------~--~v---~~~a~~~L~~l~~~~~~~~~~~ 245 (554)
+| + .+ ......+|..+..++.+|...+
T Consensus 601 hkll~gpdqysgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklF 680 (2799)
T KOG1788|consen 601 HKLLRGPDQYSGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLF 680 (2799)
T ss_pred hhhccCcchhhhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHH
Confidence 00 0 00 0122456667777778888888
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC--------Ch----HHHHHHHH
Q 008781 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--------CS----ESQREAAL 313 (554)
Q Consensus 246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--------~~----~~~~~a~~ 313 (554)
.+..++..++.++ -+++-|...++.+..|....+... ...-+-.++..|+++ +. ........
T Consensus 681 reanGvklilpfl--indehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmG 754 (2799)
T KOG1788|consen 681 REANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMG 754 (2799)
T ss_pred HhhcCceEEEEee--echHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHH
Confidence 8888888777777 344556667777777655444311 011223455555542 11 22334445
Q ss_pred HHHHHhcCCcccHHHHHHcCCHHHHHHHhCC--------CCHHH--HHHHHHH---HHH--HhcCCCcchhhhhcCCHHH
Q 008781 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--------PDVQL--REMSAFA---LGR--LAQDMHNQAGIAHNGGLVP 378 (554)
Q Consensus 314 ~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~--------~~~~v--~~~a~~~---L~~--L~~~~~~~~~l~~~~~l~~ 378 (554)
+++.+...+...+..+.+.+++..|...|.. +..+. --.-... +.. ++.++.|+..+...-.-+.
T Consensus 755 alwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqt 834 (2799)
T KOG1788|consen 755 ALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQT 834 (2799)
T ss_pred HHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHH
Confidence 6666654445566667777777777666531 11111 1111111 222 2334455544322111222
Q ss_pred HHHHhcCCC-------hhHHHHHHH-HHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchH
Q 008781 379 LLKLLDSKN-------GSLQHNAAF-ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (554)
Q Consensus 379 L~~ll~~~~-------~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 450 (554)
+..+|.... ..+...... ++..+. .+.-..+.....-+..+-+..+........ ....-+.++..+++
T Consensus 835 ftsLLresgllcvnler~viqlllElalevlv-ppfLtSEsaAcaeVfelednifavntPsGq---fnpdk~~iynagav 910 (2799)
T KOG1788|consen 835 FTSLLRESGLLCVNLERHVIQLLLELALEVLV-PPFLTSESAACAEVFELEDNIFAVNTPSGQ---FNPDKQKIYNAGAV 910 (2799)
T ss_pred HHHHHHHhccceecchHHHHHHHHHHHHHhhC-CchhhhhHHHHHHHhhcccceeeeccCCCC---cCchHhhhcccchh
Confidence 222222111 001111111 111111 000000000000000000000000000000 00001123566778
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhhcCCch-hhHHHHHcCcHHHHHHhhC
Q 008781 451 NHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLG 499 (554)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~ 499 (554)
+.|+..+-...|.+|.+-++.+..++..++ ++......|.++.|+++..
T Consensus 911 RvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 911 RVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 888888888889999999999999987755 6666666777777776654
No 222
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.50 E-value=6 Score=36.98 Aligned_cols=220 Identities=15% Similarity=0.058 Sum_probs=119.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc--CChHHHHHHHHHHHHHhcCCcccHHHHH
Q 008781 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIV 330 (554)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 330 (554)
.|-..|.++++.+|..++.+|..+...-+.. .+...-+..|+..+.+ .+......++.++..|.....-....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence 3456788999999999999999987654421 1222234555555433 24455555566666665322111111
Q ss_pred HcCCHHHHHHHhC--CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHHcccCCc-
Q 008781 331 QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNED- 406 (554)
Q Consensus 331 ~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~- 406 (554)
...++..+.+-.. +-....|..+...|..+..+......-...+++..+++++. .+||.....+...+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 1112333333222 23456788888888888765322111122345667777774 4678877777777666654433
Q ss_pred --chhHHHhh--Cccccccc--hhhhhhhhHHHHHHHHHHH---HHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcC
Q 008781 407 --NVADFIRV--GGVQKLQD--GEFIVQATKDCVAKTLKRL---EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (554)
Q Consensus 407 --~~~~~~~~--~~i~~L~~--~~~~~~~~~~~~~~~~~~l---~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 477 (554)
..+.+.+. .+.+.-.. ......-+++-+...+.+. ...+....++.|++-|.++.+.++..++.+|...+.
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 12222211 11111000 0011122334444433322 234566678999999999999999999999988754
No 223
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=8.6 Score=38.48 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=83.7
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHh
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l 234 (554)
.|.+..++..+.....++. -.++..|+..|.|.+...|..... .....+..++. +....+.+|+..++.+|..+
T Consensus 253 ~~lL~s~~~~la~ka~dp~----a~~r~~a~r~L~~~as~~P~kv~t-h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPS----AKSRGMACRGLGNTASGAPDKVRT-HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred cccHHHHHHHHHHhccCch----hHHHHHHHHHHHHHhccCcHHHHH-hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3555555544443322221 189999999999999874543222 22234444554 44456788999999998888
Q ss_pred ccCCccchHH-HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHH--cCCHHHHHHHhccCChHHH
Q 008781 235 AFKNDENKNQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLA--AGALQPVIGLLSSCCSESQ 308 (554)
Q Consensus 235 ~~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~--~~~l~~L~~lL~~~~~~~~ 308 (554)
... ..+... ..=.++.-.+..+..++++++|..+...++.|+..... .+..+.+ .+....++-.++++++.+.
T Consensus 328 ~~~-~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va 404 (533)
T KOG2032|consen 328 LEK-ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA 404 (533)
T ss_pred HHh-hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH
Confidence 752 222111 11112344566778899999999999999988653221 1122221 1233344444566666443
No 224
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.41 E-value=0.6 Score=35.53 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=56.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChh
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (554)
...+..+.++.+.+|.+++..|+.+..... .......+++..++..++++++-|-..|+.+|..|+...+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 455667788889999999999999997544 12222245778888999999999999999999999876554
No 225
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=92.33 E-value=12 Score=36.60 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=93.5
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc----------CCCHHHHHHHHHHHHHHhc
Q 008781 210 PPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----------SEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 210 ~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~v~~~a~~~L~~L~~ 278 (554)
..++..+.++. ...+...+..++-++.+ ...-.-+.....++.|+.+.. ..+..|...++.||+|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 35666666554 34555666777777753 222222222223444444432 1345889999999999999
Q ss_pred cChhhHHHHHHcCCHHHHHHHhccC-----ChHHHHHHHHHHHHHhcCCcccHH-HHHHcCCHHHHHHHhCCC---CH--
Q 008781 279 SSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSP---DV-- 347 (554)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~~~~L~~~l~~~---~~-- 347 (554)
+++..+...........+.+.+... ...+...-.+.|.-++.-..+.+. .+.+.++++.+..++.++ ++
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 9999888888888777777766432 123444445555555544455544 445678889999998632 11
Q ss_pred ----------HHHHHHHHHHHHHhcCC
Q 008781 348 ----------QLREMSAFALGRLAQDM 364 (554)
Q Consensus 348 ----------~v~~~a~~~L~~L~~~~ 364 (554)
.....++.++.|++.+.
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 23446666777776544
No 226
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=1.5 Score=44.28 Aligned_cols=128 Identities=21% Similarity=0.229 Sum_probs=84.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHH-hcCCChhHHHHHHHHHHHcccCCcchhHHHhhCc
Q 008781 338 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (554)
Q Consensus 338 L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 416 (554)
+-+++.+.++-+|.....++.---.+.. +.+++..++.. .++.+.+|+.+|.-+|+-+|..+.+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3445556666777766666553322221 23456666665 5778899999999999998776544
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHH-hhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHH
Q 008781 417 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 495 (554)
Q Consensus 417 i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~ 495 (554)
.++..+++| ++.++-||..++.+|+-.|.+...+. .+..|.
T Consensus 586 --------------------------------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~ 627 (926)
T COG5116 586 --------------------------------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILE 627 (926)
T ss_pred --------------------------------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHH
Confidence 144445555 45788888888888888887755332 245666
Q ss_pred HhhCCCChhHHHHHHHHHHHHHh
Q 008781 496 GLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 496 ~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
.++.+.+.-||..|.-++.-+..
T Consensus 628 ~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 628 ALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred HHhhCcHHHHHHHHHHHHHHHHh
Confidence 77777777777777777665543
No 227
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.08 E-value=2.8 Score=35.91 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (554)
...|.++..|...++... +..++.++++.|+.+.. ||-..+.+....- ..-...... .....
T Consensus 6 ~~yP~LL~~L~~iLk~e~-s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~-----------~~~~~ 68 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQ-SQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSND-----------ESTDI 68 (160)
T ss_pred HHhHHHHHHHHHHHHhCC-CHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccc-----------cchhh
Confidence 457788888888877664 57899999999999988 6654442221111 000000000 11111
Q ss_pred HHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
.....+.....+++-..+ ++..|++.|++..-. .-...++.++.++... ...+..-.-..++|.++..
T Consensus 69 ~l~~~~~~~~~ee~y~~v----vi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~ 136 (160)
T PF11865_consen 69 SLPMMGISPSSEEYYPTV----VINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRV 136 (160)
T ss_pred HHhhccCCCchHHHHHHH----HHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHH
Confidence 111111111344444344 478899999887654 3444566666666642 3223333335678899999
Q ss_pred hcCCCHHHHHHHHHHHHHhc
Q 008781 216 LEFTDTKVQRAAAGALRTLA 235 (554)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~ 235 (554)
++..+...++....-|..+.
T Consensus 137 i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 137 IRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHhCCHHHHHHHHHHHHHHH
Confidence 98777777776666666554
No 228
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=6.4 Score=41.44 Aligned_cols=285 Identities=12% Similarity=0.083 Sum_probs=144.1
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcC---ChhhHHHHHHcCChHHHHHHHhccccCccccchh
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV---KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~ 179 (554)
.|+++.++.+|.......+. -..+.-.+.|++.++++.. .+..-..+.+.=+++.++..+++...
T Consensus 407 qgiLsf~~sil~qsaa~psn----~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg-------- 474 (970)
T COG5656 407 QGILSFLLSILGQSAATPSN----IDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG-------- 474 (970)
T ss_pred hhHHHHHHHHHhcccCCCCc----cccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc--------
Confidence 68899999999543321110 0123455678888887762 33334445555567777777787776
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhc--CCHHHHHHh
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILM 257 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~l 257 (554)
-++.++|..+..+..+-+... ...........++++.+-.++..|+-+|.-+..+ ......+..+ +.++.|+.+
T Consensus 475 fL~Srace~is~~eeDfkd~~---ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~-~q~h~k~sahVp~tmekLLsL 550 (970)
T COG5656 475 FLKSRACEFISTIEEDFKDNG---ILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN-EQSHEKFSAHVPETMEKLLSL 550 (970)
T ss_pred chHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc-hhhhHHHHhhhhHHHHHHHHh
Confidence 888999999999865443322 2223445666777888888999999999988874 3444444332 333444444
Q ss_pred hcCCCHHHHHHHHHHHHH-HhccChhhHHHHHH---cCCHHHHHHHhccCC------hHHHHHHHHHHHHHhcC--Cccc
Q 008781 258 LRSEDSAIHYEAVGVIGN-LVHSSPNIKKEVLA---AGALQPVIGLLSSCC------SESQREAALLLGQFAAT--DSDC 325 (554)
Q Consensus 258 l~~~~~~v~~~a~~~L~~-L~~~~~~~~~~~~~---~~~l~~L~~lL~~~~------~~~~~~a~~~L~nl~~~--~~~~ 325 (554)
-+.-+.++.......+.. .+..-......+.. ..++.....++..++ .+-+..|.+.|..+.+. +-++
T Consensus 551 Sn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen 630 (970)
T COG5656 551 SNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLEN 630 (970)
T ss_pred cccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhccc
Confidence 444444444444433322 21111111111111 112222233333221 12334444555444311 1122
Q ss_pred HHHHH---HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCCh-hHHHHHHHHHHHc
Q 008781 326 KVHIV---QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGL 401 (554)
Q Consensus 326 ~~~~~---~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l 401 (554)
+..++ .....|.+-=.+++.-.+.-.+|+..+-+.+.....-. -..-|..+.+.+++.+... .-.+.+.-++.|+
T Consensus 631 ~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~-pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nf 709 (970)
T COG5656 631 RPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE-PIMWGIFELLLNLLIDEITAVYSEEVADALDNF 709 (970)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh-hhhhHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 22222 22334444444555555666677777776653221111 1111334445555555442 4455666677777
Q ss_pred ccC
Q 008781 402 ADN 404 (554)
Q Consensus 402 ~~~ 404 (554)
...
T Consensus 710 ity 712 (970)
T COG5656 710 ITY 712 (970)
T ss_pred HHh
Confidence 543
No 229
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.45 E-value=2.9 Score=39.14 Aligned_cols=140 Identities=16% Similarity=0.239 Sum_probs=91.9
Q ss_pred CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhh
Q 008781 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA 371 (554)
Q Consensus 292 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~ 371 (554)
.+...+..|.+.+|+....++..+..|+...++.....+ ..++-.+++-+++....+...|+.++..+...-.+...-
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345566777888899999999999998765443222111 224455556667788889999999999987643332111
Q ss_pred hcCCHHHHHH-Hhc---CCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhh
Q 008781 372 HNGGLVPLLK-LLD---SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 447 (554)
Q Consensus 372 ~~~~l~~L~~-ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 447 (554)
.+..++. +++ .++.-+++.|..+|..+..+....
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------------------------------------- 204 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------------------------------------- 204 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH---------------------------------------
Confidence 2333333 332 234557888888888876654321
Q ss_pred chHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 008781 448 RVLNHLLYLMRVAEKGVQRRVALALAHL 475 (554)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l 475 (554)
.+++.|+..+.+.++.++..++.+..+.
T Consensus 205 ~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 205 KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2377888888899999888888777665
No 230
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.38 E-value=1.2 Score=39.25 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=60.6
Q ss_pred cchHHHHhcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHHhccChhhHHHHH-HcCCHHHHHHHhccCChHHHH
Q 008781 240 ENKNQIVECNALPTLILMLRS---------EDSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCSESQR 309 (554)
Q Consensus 240 ~~~~~~~~~~~~~~L~~ll~~---------~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~~~ 309 (554)
.-...|++.|++..|+.+|.. .+......+++||..|....... ..++ ..+.+..++..|.+.+..++.
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~-~~v~~~~~~v~~i~~~L~s~~~~~r~ 176 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGL-EAVLSHPDSVNLIALSLDSPNIKTRK 176 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHH-HHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHH-HHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence 446677788899999888761 45678999999999997654444 4555 478999999999999999999
Q ss_pred HHHHHHHHHh
Q 008781 310 EAALLLGQFA 319 (554)
Q Consensus 310 ~a~~~L~nl~ 319 (554)
.++.+|..+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 231
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.24 E-value=12 Score=34.41 Aligned_cols=161 Identities=20% Similarity=0.157 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh--
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-- 257 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-- 257 (554)
+++...+..|..+|..+.... .-++..+..+...+....+.-+.+.+..+...++... +.+..++..
T Consensus 16 ~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~~ 84 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLLI 84 (234)
T ss_pred HHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHH
Confidence 889999999999998551211 2244567777777777776677777777775433322 223333333
Q ss_pred ---h---c--CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh-ccCChHHHHHHHHHHHHHhcCCcccHHH
Q 008781 258 ---L---R--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVH 328 (554)
Q Consensus 258 ---l---~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 328 (554)
. . +...+.......++..++...++.. ..+++.+..++ .++++.++..++..|..++..+
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~------ 153 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE------ 153 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh------
Confidence 1 1 2234556666678888887766632 23677888888 6777778888888998888321
Q ss_pred HHH-cCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhc
Q 008781 329 IVQ-RGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 329 ~~~-~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~ 362 (554)
+++ ......+..-+. +..+.+....+..+..+..
T Consensus 154 vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~ 189 (234)
T PF12530_consen 154 VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQ 189 (234)
T ss_pred hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhcc
Confidence 221 122334444444 2355555544444444433
No 232
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=91.11 E-value=16 Score=35.64 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=113.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhc-cChhhHHHHHHc--CCHHHHHHHhccC-----C--------hHHHHHHHH-
Q 008781 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA--GALQPVIGLLSSC-----C--------SESQREAAL- 313 (554)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~--~~l~~L~~lL~~~-----~--------~~~~~~a~~- 313 (554)
++.+.+.|.+....+...+++.|..++. ........+... --.+.+..++... . +.+|...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888988888889999999999988 665666777654 2344566666321 1 167777766
Q ss_pred HHHHHhcCCcccHHHHHH-cCCHHHHHHHhCCCCHHHHHHHHHHHHH-HhcCCC----cchhhhhcCCHHHHHHHhcCCC
Q 008781 314 LLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMH----NQAGIAHNGGLVPLLKLLDSKN 387 (554)
Q Consensus 314 ~L~nl~~~~~~~~~~~~~-~~~~~~L~~~l~~~~~~v~~~a~~~L~~-L~~~~~----~~~~l~~~~~l~~L~~ll~~~~ 387 (554)
+|..+...++..+..++. .+.+..+.+.|..+++++....+.+|.. +..+.. .+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 445555555666666664 5678888888888888999999999985 444432 2334666778888888777766
Q ss_pred h----hHHHHHHHHHHHcccCCcch
Q 008781 388 G----SLQHNAAFALYGLADNEDNV 408 (554)
Q Consensus 388 ~----~v~~~a~~~L~~l~~~~~~~ 408 (554)
+ .+...+-..|..+|.++..-
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 6 88888999999998876553
No 233
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.06 E-value=2.1 Score=43.47 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=72.0
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcc--Chhh
Q 008781 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNI 283 (554)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~ 283 (554)
.|.+..+++.+.+++..++..++..|+.+.. .....+...-.|++..|.+-+-+..+.||..|+.+|+.+-.. ++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 4667788888889999999999999999986 333333444456788888888889999999999999998542 2222
Q ss_pred HHHHHHcCCHHHHHHHhc-cCChHHHHHHHHH
Q 008781 284 KKEVLAAGALQPVIGLLS-SCCSESQREAALL 314 (554)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~-~~~~~~~~~a~~~ 314 (554)
. ....+..+++ +++.++++.|...
T Consensus 169 --~-----~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 169 --R-----IVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred --H-----HHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 2334555665 4567777765543
No 234
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.04 E-value=6 Score=41.25 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-cCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHH
Q 008781 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~ 339 (554)
.+++++..|.-+|..+..-+.+... .-+|.++..+. +++|.++..|+..|+.++..- ....+. .-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf----N~~~de-~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF----NTTADE-HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh----hhhhHH-HHHHHH
Confidence 5788888888888877544333222 25788888887 678889999998888886322 222222 345677
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc
Q 008781 340 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 406 (554)
Q Consensus 340 ~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 406 (554)
.-|.+.+..+++.++.++.+|.-... +--.|-++.+..+|.+++..+...|-..+..++..+.
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 88888999999999999999865322 2234677888899999999999988888888876544
No 235
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.03 E-value=2.4 Score=45.66 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=103.8
Q ss_pred HHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh--HHHHHh
Q 008781 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI--PPLVEL 215 (554)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i--~~L~~l 215 (554)
+|.++. .+++....+.+.|++..+...++..... ++...++..+.|++...+ .+..+.....+ ..+-.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~-------~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE-------ELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVL 565 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch-------hHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHH
Confidence 677888 8899999999999999999999977443 899999999999997332 22222211111 233334
Q ss_pred hcCC-CHHHHHHHHHHHHHhccCCccc-----hHH----H--------------HhcCCHHH-HHHhhc-CCCHHHHHHH
Q 008781 216 LEFT-DTKVQRAAAGALRTLAFKNDEN-----KNQ----I--------------VECNALPT-LILMLR-SEDSAIHYEA 269 (554)
Q Consensus 216 l~~~-~~~v~~~a~~~L~~l~~~~~~~-----~~~----~--------------~~~~~~~~-L~~ll~-~~~~~v~~~a 269 (554)
+..- +.+.-..++..|..+..+.+.. +.. + .....+.. +.+++. +..+....+|
T Consensus 566 ~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWa 645 (699)
T KOG3665|consen 566 LNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWA 645 (699)
T ss_pred HhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHH
Confidence 4443 3377788888888887642211 000 0 00111222 444444 4456789999
Q ss_pred HHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 008781 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (554)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (554)
++++.++...+++..+.+...++++.+...-.
T Consensus 646 l~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 646 LWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 99999999988888888888888887776644
No 236
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.89 E-value=13 Score=36.85 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--
Q 008781 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-- 217 (554)
Q Consensus 140 L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-- 217 (554)
+-+++-+++ ...+.+.+-.+.+-+-+...+.. .-+..|+..+..+|...+..-..+. ...+-.++.
T Consensus 194 ~Pnl~~~e~-D~ElfEddP~EYIrrd~e~sd~~-------TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y 261 (370)
T PF08506_consen 194 FPNLCLREE-DEELFEDDPEEYIRRDLEGSDSD-------TRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQY 261 (370)
T ss_dssp HHHHS--HH-HHHHHHHSHHHHHHHHSCSS----------SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred cCccCCCHH-HHHHHccCHHHHHHhhccccccC-------CcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHH
Confidence 446663333 23344455566666655443221 6778899999999974332211111 122223332
Q ss_pred ----CCCHHHHHHHHHHHHHhccCCcc------------chHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh
Q 008781 218 ----FTDTKVQRAAAGALRTLAFKNDE------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (554)
Q Consensus 218 ----~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 281 (554)
+.+..-+..|+..+..++..... +...+....++|.|. --.+..+-++..|++.+...-..-+
T Consensus 262 ~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~ 340 (370)
T PF08506_consen 262 ASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP 340 (370)
T ss_dssp HH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-
T ss_pred hhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC
Confidence 24567778888888888764321 112233333444443 1114567788899998888754322
Q ss_pred hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHH
Q 008781 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (554)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L 315 (554)
.+.+ .++++.++.+|.+++.-+...|+.++
T Consensus 341 --~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 --KEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp --HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred --HHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222 34899999999999988888888764
No 237
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.76 E-value=2.2 Score=40.29 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCC--ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHc
Q 008781 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN 156 (554)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~ 156 (554)
.+.-++..++-+..++.....+...+ +...+..++...... ..+..+..+++++.|+..++..+..+...
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~ml~lR~l~NlF~~~~~~~~~~~~ 150 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS--------SPPANQMLALRLLANLFSHPPGRQLLLSH 150 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT--------SSHHHHHHHHHHHHHHTTSCCCHHHHHCT
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC--------CcHHHHHHHHHHHHHhhCCCccHHHHHhc
Confidence 46688888888888888877776554 466677776665432 13378889999999999888888777755
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHH-HHHhcCChHHHHHhh-cC-CCHHHHHHHHHHHHH
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-RVRMEGGIPPLVELL-EF-TDTKVQRAAAGALRT 233 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~i~~L~~ll-~~-~~~~v~~~a~~~L~~ 233 (554)
.. ..+...+......... ....++..++.++.|++...-..+. .-.....+..+.+.+ .. .+++....++.+|++
T Consensus 151 ~~-~~i~~~~~~~~~~~~~-~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGt 228 (268)
T PF08324_consen 151 FD-SSILELLSSLLSSLLD-SNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGT 228 (268)
T ss_dssp HH-TCHHHHCHCCCTTS-H-HHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 32 1333333332221100 0118889999999999852111110 000111344555533 22 688999999999999
Q ss_pred hccCC
Q 008781 234 LAFKN 238 (554)
Q Consensus 234 l~~~~ 238 (554)
+...+
T Consensus 229 L~~~~ 233 (268)
T PF08324_consen 229 LLSSS 233 (268)
T ss_dssp HHCCS
T ss_pred HhccC
Confidence 99644
No 238
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.53 E-value=15 Score=39.54 Aligned_cols=201 Identities=18% Similarity=0.185 Sum_probs=106.4
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (554)
++..+.+++...... - ..+...|..+. ....... ..+..+..+++....... ..+..
T Consensus 396 av~~i~~~I~~~~~~------------~-~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~----~~l~~ 453 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT------------D-DEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNS----PYLRE 453 (618)
T ss_dssp HHHHHHHHHHTT-S-------------H-HHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-----HHHHH
T ss_pred HHHHHHHHHHcCCCC------------H-HHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCC----hhHHH
Confidence 566777788775441 1 13445555544 1112111 234556666654322110 15666
Q ss_pred HHHHHHHHHhhc---Cc------hhHHHHHhcCChHHHHHhhc----CCCHHHHHHHHHHHHHhccCCccchHHHHhcCC
Q 008781 184 RAADAITNLAHE---NS------SIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNA 250 (554)
Q Consensus 184 ~a~~~L~~L~~~---~~------~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 250 (554)
.|+-+++.+... .. ...........++.+...+. ..+..-+..++.+|+|+.. ...
T Consensus 454 ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~ 522 (618)
T PF01347_consen 454 TALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PES 522 (618)
T ss_dssp HHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGG
T ss_pred HHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chh
Confidence 666666665531 10 01111222345666666665 3566788889999999974 235
Q ss_pred HHHHHHhhcCC---CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC--ChHHHHHHHHHHHHHhcCCccc
Q 008781 251 LPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDC 325 (554)
Q Consensus 251 ~~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~ 325 (554)
++.+...+... +..+|..|+++|..++...+.. +.+.+..++.+. +.++|..|..+|... .|..
T Consensus 523 i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~ 591 (618)
T PF01347_consen 523 IPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP 591 (618)
T ss_dssp HHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H
T ss_pred hHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH
Confidence 78888877765 6789999999999886655543 345577777653 467777777666553 1221
Q ss_pred HHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHH
Q 008781 326 KVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFA 356 (554)
Q Consensus 326 ~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~ 356 (554)
..+..+...+. +++..+.......
T Consensus 592 -------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 592 -------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 13455666665 4566666544443
No 239
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.49 E-value=2.1 Score=40.00 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=92.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHH
Q 008781 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (554)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 330 (554)
+...+..|.+++.+.....+..+..|+...++.....+ ...+-.+++-+.+....+.+.|+.+++.+.+.-...... .
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-E 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45566777788888888888888888765443322222 124445555666777889999999999987543322222 1
Q ss_pred HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcc
Q 008781 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (554)
Q Consensus 331 ~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (554)
..+.+..|+.--..++..+++.|-.+|..+..+...+. +++.|+..+.+.++.++..++....+..
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 12222222222223567899999999999987654433 4566777788888888887776665543
No 240
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.41 E-value=0.61 Score=41.85 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhh-CCHHHHH
Q 008781 388 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQR 466 (554)
Q Consensus 388 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~-~~~~v~~ 466 (554)
-.-|..|+.+|+.|+..+.|...++..+-...+ .+++..|+.++.. .++..|+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRl--------------------------E~l~~~L~r~l~~~e~~v~RE 191 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRL--------------------------ERLFHTLVRLLGMREDQVCRE 191 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHH--------------------------HHHHHHHHHHhccccchhHHH
Confidence 346889999999999998888777665543221 1245677777755 6888999
Q ss_pred HHHHHHHhhcCCch--hhHHHHHcCcHHHHHHhhCCCCh
Q 008781 467 RVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNP 503 (554)
Q Consensus 467 ~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~ 503 (554)
.|+-+|.+||.+++ ++..-.+.+.+..|+.++++...
T Consensus 192 fAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 192 FAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 99999999998877 55666778899999999985443
No 241
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.36 E-value=6.4 Score=40.23 Aligned_cols=119 Identities=21% Similarity=0.249 Sum_probs=80.1
Q ss_pred hccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHH
Q 008781 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (554)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~ 313 (554)
...++|++ ..++ .|.+.++++.+.+.+..||..++..|.-++..-.+. ...+-.|++..|..-+-+..+.++.+|+.
T Consensus 78 ~~~~dpeg-~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~ 154 (885)
T COG5218 78 DMPDDPEG-EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVK 154 (885)
T ss_pred cCCCChhh-hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33334444 2333 356788888888999999999999999986543332 35555677788888787888999999999
Q ss_pred HHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcC
Q 008781 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 314 ~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~ 363 (554)
+|+.+- ..+.+.. ......|..+++ +++.++|..| |.|+.-+
T Consensus 155 ~L~~~Q-e~~~nee----n~~~n~l~~~vqnDPS~EVRr~a---llni~vd 197 (885)
T COG5218 155 VLCYYQ-EMELNEE----NRIVNLLKDIVQNDPSDEVRRLA---LLNISVD 197 (885)
T ss_pred HHHHHH-hccCChH----HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeC
Confidence 999985 2222222 123345666666 5777888864 4555433
No 242
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=5.8 Score=41.40 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=113.7
Q ss_pred HHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhh----HHHHHHcCChHHHHHHHhccccCccccchhH
Q 008781 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEH----QQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (554)
Q Consensus 107 ~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~----~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~ 180 (554)
|.|.+-|+..+. .||..|+..+.++- .+|+. .+.+++. -...+.++|+++.+ .
T Consensus 177 p~l~R~L~a~Ns------------~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p--------~ 235 (1005)
T KOG1949|consen 177 PILWRGLKARNS------------EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYP--------M 235 (1005)
T ss_pred HHHHHhhccCch------------hhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCc--------h
Confidence 344455666666 99999999999988 66554 3334433 25778899999887 7
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (554)
++..|..-+........+.--.-.-...+..+..-+ .++..++|......|-.+.. +|.....+- . ++|.+-..|.
T Consensus 236 VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~le-~-~Lpal~~~l~ 312 (1005)
T KOG1949|consen 236 VRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLLE-Q-LLPALRYSLH 312 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhHHH-H-HHHhcchhhh
Confidence 888777766665542221100000011222222222 23456889989999998886 555443332 2 3566667777
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHh
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 319 (554)
+....||..+...|..+-.. ....+..---++.++..|...+.++.+..+..+.+.+
T Consensus 313 D~se~VRvA~vd~ll~ik~v---ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 313 DNSEKVRVAFVDMLLKIKAV---RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred ccchhHHHHHHHHHHHHHhh---hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 88999999999998887321 1122222234566666777666667666666666654
No 243
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.02 E-value=22 Score=35.56 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhcCCh----hhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 008781 131 EVEKGSAFALGLLAVKP----EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~----~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 206 (554)
+=+-.++....+++.+. .+++.+.+.=+.+.+-+++...+.+.+.. +.-.+..++.+|..+|. .|+....--.-
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcp-d~Vy~~i~itvLacFC~-~pElAsh~~~v 103 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCP-DDVYLQISITVLACFCR-VPELASHEEMV 103 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCc-HHHHHHHHHHHHHHHhC-ChhhccCHHHH
Confidence 66777888888888333 35677888877888888998765543332 22455667888999998 44433322223
Q ss_pred CChHHHHHhhcC-CCH------HHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhc
Q 008781 207 GGIPPLVELLEF-TDT------KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVH 278 (554)
Q Consensus 207 ~~i~~L~~ll~~-~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~L~~ 278 (554)
.-||.|...+.. .++ .+...+..+|..++. .+.....++..|+++.+.++-.-++ ..-...++.++.-+.+
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~ 182 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVS 182 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHH
Confidence 568888888854 222 367888899999987 5888888999999999987544222 2122223333322222
Q ss_pred cCh---hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhc
Q 008781 279 SSP---NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (554)
Q Consensus 279 ~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 320 (554)
... +....+.. .+..+..=+...+...+.+.+..|..+..
T Consensus 183 ~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 183 KLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred hcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 111 11112211 23333333344556677788888886643
No 244
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.98 E-value=43 Score=38.70 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=90.1
Q ss_pred cCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHH
Q 008781 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 411 (554)
Q Consensus 332 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 411 (554)
.+++|.|...|.+.+..+|..|...++.+.......-.=-........+.-+.+.+..||..++....++..+.+....-
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 46889999999999999999999999999875544322001223444566667788899998888777764443221110
Q ss_pred HhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcH
Q 008781 412 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 491 (554)
Q Consensus 412 ~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l 491 (554)
. ...+.--.++.|+.++.....++.. |.-.+....+... .+
T Consensus 338 ~-------------------------------------~~~~~l~~~~~D~~~rir~~v~i~~-~~v~~~~l~~~~~-ll 378 (1266)
T KOG1525|consen 338 S-------------------------------------TILLALRERDLDEDVRVRTQVVIVA-CDVMKFKLVYIPL-LL 378 (1266)
T ss_pred H-------------------------------------HHHHHHHhhcCChhhhheeeEEEEE-eehhHhhhhhhHH-HH
Confidence 0 0011111234455554433322221 2222222222333 55
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 492 ELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 492 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
....+.+.+....||..|...|..+-++
T Consensus 379 ~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 379 KLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 6666777788999999999999988875
No 245
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.46 E-value=4.3 Score=38.24 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcC--ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc-C
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-G 207 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-~ 207 (554)
+-+--++.++.-+.-++.....+...+ ....+..++...... .....+..+++++.|+.. ++..+..+... +
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~ 152 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS----SPPANQMLALRLLANLFS-HPPGRQLLLSHFD 152 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT----SSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC----CcHHHHHHHHHHHHHhhC-CCccHHHHHhccc
Confidence 335567788877776666655555443 345566666554322 112788889999999988 44445444432 2
Q ss_pred -ChHHHHHhhcCC----CHHHHHHHHHHHHHhccCCccch-HHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhcc
Q 008781 208 -GIPPLVELLEFT----DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHS 279 (554)
Q Consensus 208 -~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~L~~~ 279 (554)
.+...+..+... +..++..++..+.|++....... ..-.....+..+...+. ..++++...++-+|+++...
T Consensus 153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~ 232 (268)
T PF08324_consen 153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSS 232 (268)
T ss_dssp TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence 233333333333 67899999999999975211111 00011123455555333 26899999999999999976
Q ss_pred Chhh
Q 008781 280 SPNI 283 (554)
Q Consensus 280 ~~~~ 283 (554)
.+..
T Consensus 233 ~~~~ 236 (268)
T PF08324_consen 233 SDSA 236 (268)
T ss_dssp SHHH
T ss_pred ChhH
Confidence 5544
No 246
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=88.67 E-value=27 Score=34.62 Aligned_cols=288 Identities=16% Similarity=0.118 Sum_probs=138.7
Q ss_pred HHHHHHHHHhcc-C-hhhHHHHHhCCChHHHHHhhcCCCCCcc---ccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 008781 81 KRATHVLAELAK-N-EEVVNWIVEGGAVPALVKHLQAPPTSEA---DRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (554)
Q Consensus 81 ~~a~~~L~~l~~-~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~---~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~ 154 (554)
...+++...+.. + |+.-..-. ...+..+..+|..+++... ++.+.+ -+.++..++..+...+ ...+.-..++
T Consensus 58 ~lilKiF~sL~~~DLPe~fed~l-~~wm~~f~~~L~~~~p~l~~~d~~e~~~-l~kvK~~i~~~~~ly~~kY~e~f~~~l 135 (370)
T PF08506_consen 58 KLILKIFYSLNCQDLPEFFEDNL-SEWMEIFHKYLTYPNPALEEDDDDEPGL-LEKVKAWICENLNLYAEKYEEEFEPFL 135 (370)
T ss_dssp HHHHHHHHHHHSSS--HHHHHTH-HHHHHHHHHHHH--SGGG-TT-SSS--H-HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHccCcCcHHHHHHH-HHHHHHHHHHHcCCCcccCCCCcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555 3 44222111 1234455555555443211 111111 2467777777776666 2222211122
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
...+..+.++|.........+ .+...++..|..++. .+..+..+...+.+..+++- -++-++
T Consensus 136 -~~fv~~vw~lL~~~~~~~~~D---~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Iie~-------------VI~Pnl 197 (370)
T PF08506_consen 136 -PTFVQAVWNLLTKISQQPKYD---ILVSKALQFLSSVAE-SPHHKNLFENKPHLQQIIEK-------------VIFPNL 197 (370)
T ss_dssp -HHHHHHHHHHHTC--SSGGGH---HHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHHHH-------------THHHHH
T ss_pred -HHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHHHH-------------hccCcc
Confidence 134555666665543332222 666777777777665 33322222111112222211 123355
Q ss_pred ccCCccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc------cCChHH
Q 008781 235 AFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSES 307 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~ 307 (554)
+. +++..+ +.+.+-.+.+-+-+. ++...-|..|+..|..|+...+.....+ +...+..++. +.++.-
T Consensus 198 ~~-~e~D~E-lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 198 CL-REEDEE-LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp S---HHHHH-HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHH
T ss_pred CC-CHHHHH-HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHH
Confidence 54 333222 223333444444444 3345678889999999975433222222 1223333333 345677
Q ss_pred HHHHHHHHHHHhcCCcc------------cHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCC
Q 008781 308 QREAALLLGQFAATDSD------------CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG 375 (554)
Q Consensus 308 ~~~a~~~L~nl~~~~~~------------~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~ 375 (554)
+..|+..++.++..... ....+....++|-|. --.+..+-++..|++.+...-..- ....+ .+.
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~ 347 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQI 347 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHH
Confidence 77888888888855422 223344455556554 112456778888998888875432 12222 347
Q ss_pred HHHHHHHhcCCChhHHHHHHHHH
Q 008781 376 LVPLLKLLDSKNGSLQHNAAFAL 398 (554)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L 398 (554)
++.++++|.+++.-|...|+.++
T Consensus 348 ~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 348 FPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhhhhhC
Confidence 89999999999999999988764
No 247
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=88.63 E-value=27 Score=34.68 Aligned_cols=262 Identities=14% Similarity=0.131 Sum_probs=134.4
Q ss_pred CcchHHHHHHHHHHHHHhcCChhhHHHHHHcCC---hHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHH
Q 008781 126 KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA---LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (554)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~---l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 202 (554)
.|++..+..+|+++|+.+..+++....+-+.-. +...+..+.++..+- .+....+++|..--. .+.
T Consensus 56 ~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K------~i~~~~l~~ls~Q~f-~~~---- 124 (372)
T PF12231_consen 56 DPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPK------SICTHYLWCLSDQKF-SPK---- 124 (372)
T ss_pred CCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCC-CCc----
Confidence 456779999999999999988877665554432 444555554443321 666666666665332 221
Q ss_pred HHhcCChHHHHHhhc-----CCCHHHHHHHHHHHHHhccCCccchHHHHh-cC-CHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 203 VRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVE-CN-ALPTLILMLRSEDSAIHYEAVGVIGN 275 (554)
Q Consensus 203 ~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~-~~~~L~~ll~~~~~~v~~~a~~~L~~ 275 (554)
+.....+..++..+. -++..+....+.++.++....+. .+.+ .+ -++.++..+-+....+|..|..++..
T Consensus 125 ~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~---~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~ 201 (372)
T PF12231_consen 125 IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ---QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLE 201 (372)
T ss_pred ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 333344445554442 24567888899999999864333 2322 22 57777777777778888887766655
Q ss_pred Hhcc---ChhhHHH---HHHcC---------CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHH
Q 008781 276 LVHS---SPNIKKE---VLAAG---------ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (554)
Q Consensus 276 L~~~---~~~~~~~---~~~~~---------~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~ 340 (554)
+... +....+. ..+.. ..+.+..++.+.+......-+|...-+.-+......--.-...+...-.
T Consensus 202 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~ 281 (372)
T PF12231_consen 202 AKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEK 281 (372)
T ss_pred HHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHH
Confidence 5421 1111111 11111 2223455555533322222233222221121111110111223333334
Q ss_pred HhCCCCHHHHHHHHHHHHHHhc--CCC--cchhhhhcCCHHHHHHHhcCC-Ch----hHHHHHHHHHHHcc
Q 008781 341 MLQSPDVQLREMSAFALGRLAQ--DMH--NQAGIAHNGGLVPLLKLLDSK-NG----SLQHNAAFALYGLA 402 (554)
Q Consensus 341 ~l~~~~~~v~~~a~~~L~~L~~--~~~--~~~~l~~~~~l~~L~~ll~~~-~~----~v~~~a~~~L~~l~ 402 (554)
.+.++++.++..|..+=..+.. +.+ ........ ...|+...+... .. +++..+...++++.
T Consensus 282 cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 282 CFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 4557888999888877666653 111 11111111 233343333322 22 56777777777664
No 248
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.56 E-value=36 Score=36.64 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=23.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
.+|.+++.|..+..-|...|+.++-.+-.
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 37778888888888898899988877643
No 249
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.41 E-value=1.2 Score=33.96 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=57.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 450 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+...+..+.++.+++|..++..|.+|..... .......+.+..+...+.++++-+-..|..+|..|+...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 5666777889999999999999999976655 2223344667888899999999999999999999998654
No 250
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.99 E-value=23 Score=39.08 Aligned_cols=260 Identities=22% Similarity=0.174 Sum_probs=152.0
Q ss_pred HHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHH
Q 008781 85 HVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHL 162 (554)
Q Consensus 85 ~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L 162 (554)
.+|..+.+ +.++...+.++.++..++.++-++ +-|-..++++..+. .+|.. +.+..+-.+
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflind--------------ehRSslLrivscLitvdpkq----vhhqelmal 725 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIND--------------EHRSSLLRIVSCLITVDPKQ----VHHQELMAL 725 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeech--------------HHHHHHHHHHHHHhccCccc----ccHHHHHHH
Confidence 34556666 688899999999999999888443 33445556666555 44431 112234557
Q ss_pred HHHHhccccC----ccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC----------CCHHHHHHHH
Q 008781 163 VNLLKRHMDS----NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----------TDTKVQRAAA 228 (554)
Q Consensus 163 ~~lL~~~~~~----~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a~ 228 (554)
++.|++.... ........+....+.+++.+..-+...+..|.+.++...|...|.. .|.-+...-.
T Consensus 726 VdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklf 805 (2799)
T KOG1788|consen 726 VDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLF 805 (2799)
T ss_pred HHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHH
Confidence 7777763221 1111122555666777777776677788899999999888877631 1211222222
Q ss_pred HHHHH---hc-cCCccchHHHHhcCCHHHHHHhhc--------------------------CCCHHHHHHHHHHHHHHhc
Q 008781 229 GALRT---LA-FKNDENKNQIVECNALPTLILMLR--------------------------SEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 229 ~~L~~---l~-~~~~~~~~~~~~~~~~~~L~~ll~--------------------------~~~~~v~~~a~~~L~~L~~ 278 (554)
..|.. ++ ..++.|+..+...=.-+.+..+|+ .++-.--..|+..+-.+-.
T Consensus 806 kilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeled 885 (2799)
T KOG1788|consen 806 KILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELED 885 (2799)
T ss_pred HHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccc
Confidence 22222 11 114444443322111222222222 1111112222222222210
Q ss_pred -----cCh-----hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC---CC
Q 008781 279 -----SSP-----NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---SP 345 (554)
Q Consensus 279 -----~~~-----~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~---~~ 345 (554)
..| ..++.+...|++..++..+-...+..+.+-...+..++..++.+.......|++..+++++. ++
T Consensus 886 nifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg 965 (2799)
T KOG1788|consen 886 NIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG 965 (2799)
T ss_pred ceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC
Confidence 000 12477888999999999988888999999999999999888888887878899999888775 44
Q ss_pred CHHHHHHHHHHHHHHhc
Q 008781 346 DVQLREMSAFALGRLAQ 362 (554)
Q Consensus 346 ~~~v~~~a~~~L~~L~~ 362 (554)
.......+..++.-|+.
T Consensus 966 sspfLshalkIvemLga 982 (2799)
T KOG1788|consen 966 SSPFLSHALKIVEMLGA 982 (2799)
T ss_pred CchHhhccHHHHHHHhh
Confidence 44555566666665554
No 251
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=87.64 E-value=14 Score=32.28 Aligned_cols=113 Identities=23% Similarity=0.246 Sum_probs=73.6
Q ss_pred HHHHH-hhcCCCHHHHHHHHHHHHHhccCCccchHHHHhc-------------------CCHHHHHHhhcC-CCHHHHHH
Q 008781 210 PPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-------------------NALPTLILMLRS-EDSAIHYE 268 (554)
Q Consensus 210 ~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~~~~L~~ll~~-~~~~v~~~ 268 (554)
+.|+. ++.++++.+|..|+.++..+..+....-....+. .+-..|+..+.. .+..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34444 5577899999999999999987532221111111 112234454554 46788889
Q ss_pred HHHHHHHHhccChhhHHHH-HHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCC
Q 008781 269 AVGVIGNLVHSSPNIKKEV-LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (554)
Q Consensus 269 a~~~L~~L~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 322 (554)
.++++..+....+..+-.. +-..++..+..++.+.+.+++..++.+++.+.+..
T Consensus 122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 9999999988777654221 11224455556677888999999999999887544
No 252
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.51 E-value=37 Score=34.94 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC------CCHHHHHHHHHHHHHHhcCCCc--chhhhhcC--C
Q 008781 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQDMHN--QAGIAHNG--G 375 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~------~~~~v~~~a~~~L~~L~~~~~~--~~~l~~~~--~ 375 (554)
+....+-.++.||+..... ...+..|..+|.+ .+..+..-|+..+..+..+... -..+--.- .
T Consensus 230 ~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 4555566688888743221 2246778888832 2455666788888877655422 22222222 6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcc
Q 008781 376 LVPLLKLLDSKNGSLQHNAAFALYGLA 402 (554)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (554)
++.+...++.+++.+-...+..+.++.
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 778888888877766666666666665
No 253
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.25 E-value=39 Score=34.83 Aligned_cols=262 Identities=13% Similarity=0.102 Sum_probs=133.4
Q ss_pred hHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 008781 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (554)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~ 151 (554)
.+.+.+++..+.+.|..+.......-.... ..+-+.+..+.. +.|.. .-+.+|..|+ ++.+.
T Consensus 39 ~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~--------~~d~~---~~l~aL~~LT~~Grdi-- 101 (464)
T PF11864_consen 39 PNQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSN--------DDDFD---LRLEALIALTDNGRDI-- 101 (464)
T ss_pred CCCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCC--------chhHH---HHHHHHHHHHcCCcCc--
Confidence 334566888888888888774332111111 122233333322 11223 4455555556 44444
Q ss_pred HHHHcCChHHHHHHHhcccc-------------------CccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 008781 152 LIVDNGALSHLVNLLKRHMD-------------------SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (554)
Q Consensus 152 ~i~~~g~l~~L~~lL~~~~~-------------------~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (554)
...+.+..+.|...+..... ..............+..+.|+...+...-..-...+.+..+
T Consensus 102 ~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i 181 (464)
T PF11864_consen 102 DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQI 181 (464)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 23566777878777754320 00000011344455566666665444322222234556666
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 008781 213 VELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (554)
Q Consensus 213 ~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 291 (554)
+.++..+ ++.....++..+-.+.....-....+. .++..|...... .+....+..++.||+.+.-.. .
T Consensus 182 ~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~ 250 (464)
T PF11864_consen 182 CTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------S 250 (464)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------H
Confidence 6665443 333445555555555432222221111 123333333222 267778888999997643221 1
Q ss_pred CHHHHHHHhcc------CChHHHHHHHHHHHHHhcCCcccHHHHH-Hc--CCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 292 ALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIV-QR--GAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 292 ~l~~L~~lL~~------~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~--~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
.+..|..+|.+ .+..+.+.|+..+..+..+.......-+ -. -+++.+...++.+++.+-...+..+.++..
T Consensus 251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 45677778732 2345567788888887655422222112 12 267778888887777776677777777763
No 254
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.28 E-value=27 Score=36.57 Aligned_cols=167 Identities=21% Similarity=0.140 Sum_probs=95.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCCccchHHHH---hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHc
Q 008781 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV---ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (554)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (554)
..+..-..+.+..|+.+|+.+..+...+-..+- ...++..++..+. .++.-+..++++|.|+..+ +..++.+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 333444567788888888888875433322221 1235556666555 5677888999999999776 5544444432
Q ss_pred --CCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC---C--CCHHHHHHHHHHHHHHhcC
Q 008781 291 --GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---S--PDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 291 --~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~---~--~~~~v~~~a~~~L~~L~~~ 363 (554)
..+..+...-..++..++...+....|.+.. ....-.+.+..+.+...+. . ++.+.....+.+|++|+..
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 2222333322333445555555555555411 0000111344455444443 2 3344555677889999888
Q ss_pred CCcchhhhhcCCHHHHHHHhcC
Q 008781 364 MHNQAGIAHNGGLVPLLKLLDS 385 (554)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~ 385 (554)
+.....+...-.+..+.+-+.+
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHH
Confidence 7777777777777777766644
No 255
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=86.18 E-value=22 Score=31.03 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCCcchh------hh------hcCCHHHHHH-HhcCCChhHHHHHHHHHHHcccCCcchhHHHhhC
Q 008781 349 LREMSAFALGRLAQDMHNQAG------IA------HNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 415 (554)
Q Consensus 349 v~~~a~~~L~~L~~~~~~~~~------l~------~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 415 (554)
+|..|+.+|..+++..+.+.. +. ..+.-+.|+. ++.++++.+|..|+.++..|..+....-...+.-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677888888888876333321 11 1223444554 4577889999999999999987753322222211
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhh-CCHHHHHHHHHHHHhhcCCchhhHHHHHcCc----
Q 008781 416 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGG---- 490 (554)
Q Consensus 416 ~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---- 490 (554)
.- + ...|..- ..-+...+. .+-..|+..+.. .++.+....++++..|........ ...|.
T Consensus 82 ~~-~--~~sFtsl--S~tLa~~i~--------~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r--L~~~ll~~~ 146 (182)
T PF13251_consen 82 KG-P--SGSFTSL--SSTLASMIM--------ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR--LPPGLLTEV 146 (182)
T ss_pred CC-C--CCCcccH--HHHHHHHHH--------HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh--cCHhHHHHH
Confidence 00 0 0011110 000111111 123455666654 577888899999999976655221 12233
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhcCc
Q 008781 491 LELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 491 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
+..+..++.+.|++++..+..++..+....+.
T Consensus 147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 147 VTQVRPLLRHRDPNVRVAALSCLGALLSVQPP 178 (182)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 44555667789999999999999988875443
No 256
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=85.75 E-value=6.3 Score=30.32 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=55.9
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHH
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 513 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 513 (554)
..++..|+.++..+++..+..++..+..+...+.....+.+.|+...|.++-..-++..+...-..+
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3457889999999888899999999999999999999999999999988888777777766555444
No 257
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.65 E-value=62 Score=35.68 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=51.0
Q ss_pred chHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHH--HHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE--LLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
..+|.+...|.++++-||+.+...|.+|.... +++-+|.- .++.-+-+.+++++..|-..+..+.....
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 35788888899999999999999999986543 23333322 33333447899999999999998887653
No 258
>PRK09169 hypothetical protein; Validated
Probab=85.64 E-value=97 Score=37.91 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=34.8
Q ss_pred HHHHHHHHH-hcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 008781 134 KGSAFALGL-LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (554)
Q Consensus 134 ~~a~~~L~~-l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (554)
..+...|.. +..++..+..+- .--+..+++-|+..... +.-..++..|.......+..+..+...++...|
T Consensus 224 r~a~~~lA~rL~~~~~l~~~l~-~q~va~~LNAlSKWp~~-------~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~L 295 (2316)
T PRK09169 224 RNAAERLAERLADEPGLLQSLR-AQEVALLLNALSKWPDD-------EACRQAAEALAARLAREPGLRLALDPQGVANAL 295 (2316)
T ss_pred HHHHHHHHHHHhcChHHHHhcC-HHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHH
Confidence 334444443 335554443322 22244555555544332 344445555544444455555444334444444
Q ss_pred HHhhcCCCH
Q 008781 213 VELLEFTDT 221 (554)
Q Consensus 213 ~~ll~~~~~ 221 (554)
-.+-+-++.
T Consensus 296 NALSKwp~~ 304 (2316)
T PRK09169 296 NALSKWPDT 304 (2316)
T ss_pred HHHHhCCCc
Confidence 444444433
No 259
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.62 E-value=5.6 Score=43.10 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=95.3
Q ss_pred CcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH
Q 008781 126 KPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (554)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (554)
..+.+.++.++.-.|+++| .+..... ..+|.|++-|.-.... .++.+.+-+++.+|... .+.
T Consensus 941 ~~~~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~-------aiRnNiV~am~D~C~~Y-----Tam 1003 (1529)
T KOG0413|consen 941 AMFSDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAH-------AIRNNIVLAMGDICSSY-----TAM 1003 (1529)
T ss_pred cccchHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHH-------HHhcceeeeehhhHHHH-----HHH
Confidence 4457889999999999999 5544322 3578899888776543 77778888888888722 234
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
....+|.+...|.++++-++++++-.|.+|... .+++ ..++-.++.-+-+.+++++..|=.+++.+..
T Consensus 1004 ~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~------~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1004 TDRYIPMIAASLCDPSVIVRRQTIILLARLLQF------GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh------hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 456889999999999999999999999999862 1222 1123334444457888999999988888754
No 260
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.43 E-value=1.8 Score=38.94 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCC-------hHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHH
Q 008781 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGA-------LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~g~-------l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 202 (554)
..-|.-++.+|.+++-.+.+.+.+...+- +..|++++...... -.++.|+..|.++|..++.....
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~-------v~REfAvvlL~~La~~~~~~~r~ 210 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQ-------VCREFAVVLLSNLAQGDEAAARA 210 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccch-------hHHHHHHHHHHHHhcccHHHHHH
Confidence 35678899999999966677776665543 33444444444332 89999999999999988776644
Q ss_pred -HHhcCChHHHHHhhcCCCH
Q 008781 203 -VRMEGGIPPLVELLEFTDT 221 (554)
Q Consensus 203 -~~~~~~i~~L~~ll~~~~~ 221 (554)
..+.+.+..|+.++.+.+.
T Consensus 211 iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 211 IAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHhhchHHHHHHHHHHHHH
Confidence 4457889999999976543
No 261
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=85.18 E-value=39 Score=32.94 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=111.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcc-CCccchHHHHh-cCC-HHHHHHhhcCC-----C--------HHHHHHHHHH
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVE-CNA-LPTLILMLRSE-----D--------SAIHYEAVGV 272 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~-~~~-~~~L~~ll~~~-----~--------~~v~~~a~~~ 272 (554)
++.+.+.|.+....+...+++.|..++. +.......+.+ -+. .+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888888888888899999999987 54454444443 222 33455555311 1 2899999987
Q ss_pred HHHHhc-cChhhHHHHHH-cCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCc----ccHHHHHHcCCHHHHHHHhCCCC
Q 008781 273 IGNLVH-SSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD 346 (554)
Q Consensus 273 L~~L~~-~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~----~~~~~~~~~~~~~~L~~~l~~~~ 346 (554)
+..+.. .++..+..++. .+.+..+.+-|..+.+++....+.+|..-.-.++ ..+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 776654 55666666665 5678888888888888888888888875322332 34445666678888888777655
Q ss_pred H----HHHHHHHHHHHHHhcCCCc
Q 008781 347 V----QLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 347 ~----~v~~~a~~~L~~L~~~~~~ 366 (554)
+ .+++.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 5 8999999999999976543
No 262
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.14 E-value=3 Score=35.90 Aligned_cols=82 Identities=21% Similarity=0.142 Sum_probs=56.6
Q ss_pred cCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcC--CHHHHHHHhcCCC-hhHHHHHHHHHHHcccCCcch
Q 008781 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG--GLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNV 408 (554)
Q Consensus 332 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~--~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~ 408 (554)
......+..+++++++.-|..++..+.-.+..... ..+.+.+ .+..++..++..+ ..+...++.++..|.......
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34567788889998999998888888888765322 3333332 3677888887654 667888888988887655554
Q ss_pred hHHHhh
Q 008781 409 ADFIRV 414 (554)
Q Consensus 409 ~~~~~~ 414 (554)
..+.+.
T Consensus 103 p~l~Re 108 (165)
T PF08167_consen 103 PTLTRE 108 (165)
T ss_pred CchHHH
Confidence 444443
No 263
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.09 E-value=57 Score=34.73 Aligned_cols=162 Identities=19% Similarity=0.174 Sum_probs=90.9
Q ss_pred hHHHHHHHhccccCccccchhHHHHHHHHHHHHHhh----cCchhHHHHHhcCChHHHHHhhc----CCCHHHHHHHHHH
Q 008781 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAGA 230 (554)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~----~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~ 230 (554)
+..+..+++.+..... ..++..|+-+++++.. ..+... .......++.+...|. ..+...+...+.+
T Consensus 395 l~~l~~l~~~~~~~~~----~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 469 (574)
T smart00638 395 LKALFELAESPEVQKQ----PYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKA 469 (574)
T ss_pred HHHHHHHhcCcccccc----HHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHh
Confidence 6667777776533221 1555566666655543 222211 1122335566665553 3455667778888
Q ss_pred HHHhccCCccchHHHHhcCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc--CCh
Q 008781 231 LRTLAFKNDENKNQIVECNALPTLILMLR---SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCS 305 (554)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~ 305 (554)
|+|+.. + ..++.+...+. ..+..+|..|+++|..++...+.. +-+.++.++.+ .++
T Consensus 470 LGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~ 530 (574)
T smart00638 470 LGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPP 530 (574)
T ss_pred hhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCCh
Confidence 888874 1 23455555554 235689999999999987544443 33456666654 356
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHH
Q 008781 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSA 354 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~ 354 (554)
++|..|+.+|... .|.. ..+..+...+. +++..|.....
T Consensus 531 EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 531 EVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhH
Confidence 7777777776554 1221 12455555555 34556654433
No 264
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.70 E-value=52 Score=35.03 Aligned_cols=70 Identities=21% Similarity=0.170 Sum_probs=40.7
Q ss_pred CHHHHHHHhCC----CCHHHHHHHHHHHHHHhcCC----CcchhhhhcCCHHHHHHHh----cCCChhHHHHHHHHHHHc
Q 008781 334 AVRPLIEMLQS----PDVQLREMSAFALGRLAQDM----HNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 334 ~~~~L~~~l~~----~~~~v~~~a~~~L~~L~~~~----~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~~l 401 (554)
.+..+..++++ ..+.++..+..+++++.... ......+....++.+.+.+ ...+..-+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 46677777764 35678888888888887421 1111112233455555544 234555566777788887
Q ss_pred cc
Q 008781 402 AD 403 (554)
Q Consensus 402 ~~ 403 (554)
..
T Consensus 474 g~ 475 (574)
T smart00638 474 GH 475 (574)
T ss_pred CC
Confidence 54
No 265
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.67 E-value=13 Score=32.80 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=87.0
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (554)
+++.++++..+.+. .++..|+.++.-+....-. .-..++|.++.+..++++.++..|...+..+...
T Consensus 9 yl~~Il~~~~~~~~--------~vr~~Al~~l~~il~qGLv-----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDD--------SVRLAALQVLELILRQGLV-----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcCCC-----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 45667777766665 8999999998887763221 1234789999999999999999999999999875
Q ss_pred CccchHHHHhcCCHHHHHHh---hcCC-CHHH---HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC-------
Q 008781 238 NDENKNQIVECNALPTLILM---LRSE-DSAI---HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------- 303 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~l---l~~~-~~~v---~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~------- 303 (554)
.+.....-...| +..-... +..+ .... ...-+..+..+..++...+..+ +..+++.+...
T Consensus 76 ~~s~v~~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~ 149 (187)
T PF12830_consen 76 HESLVESRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSE 149 (187)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccc
Confidence 444333322223 2222222 1111 1111 4555566666666555555544 45566655432
Q ss_pred -ChHHHHHHHHHHHHHhcC
Q 008781 304 -CSESQREAALLLGQFAAT 321 (554)
Q Consensus 304 -~~~~~~~a~~~L~nl~~~ 321 (554)
...-......+..||+.-
T Consensus 150 ~~~~~l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 150 SSPSDLDFLLFLAENLATL 168 (187)
T ss_pred cchhHHHHHHHHHHHHhcC
Confidence 233344555666666643
No 266
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=84.22 E-value=8.1 Score=29.75 Aligned_cols=68 Identities=24% Similarity=0.192 Sum_probs=53.2
Q ss_pred HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHH
Q 008781 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (554)
Q Consensus 331 ~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (554)
...++..|+.|...+.......++..|..+..++.....+.+-|+...|.++-..-++..+..+-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45678899999998888899999999999999988888888888888877776555666555444443
No 267
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.19 E-value=24 Score=37.93 Aligned_cols=198 Identities=17% Similarity=0.151 Sum_probs=104.7
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHH
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEF----TDTKVQRAAAGALR 232 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~ 232 (554)
++..+.+++....-. -..+...|..+.... .+... .+..+..++++ .++.++..|+-+++
T Consensus 396 av~~i~~~I~~~~~~---------~~ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~ 460 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT---------DDEAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLG 460 (618)
T ss_dssp HHHHHHHHHHTT-S----------HHHHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---------HHHHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHH
Confidence 356666777764331 123555555555433 22222 34566666654 35567777777776
Q ss_pred HhccC---Cc------cchHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH
Q 008781 233 TLAFK---ND------ENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (554)
Q Consensus 233 ~l~~~---~~------~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 299 (554)
.+... .. ......+...+++.+...+. ..+..-+..++.+|+|+- .+. .++.+..+
T Consensus 461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--~~~---------~i~~l~~~ 529 (618)
T PF01347_consen 461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--HPE---------SIPVLLPY 529 (618)
T ss_dssp HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GG---------GHHHHHTT
T ss_pred HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--Cch---------hhHHHHhH
Confidence 66532 10 01111222345666665554 557788999999999993 232 56667777
Q ss_pred hccC---ChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC--CCHHHHHHHHHHHHHHhcCCCcchhhhhcC
Q 008781 300 LSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNG 374 (554)
Q Consensus 300 L~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~ 374 (554)
+.+. ...++..|+++|..++...++. +.+.++.+..+ .++++|.+|..+|... ++ .. .
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P-~~------~ 592 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC--NP-SP------S 592 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H------H
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc--CC-CH------H
Confidence 7665 5678889999999886433322 34666777664 5678988887666553 11 11 1
Q ss_pred CHHHHHHHhc-CCChhHHHHHHHHH
Q 008781 375 GLVPLLKLLD-SKNGSLQHNAAFAL 398 (554)
Q Consensus 375 ~l~~L~~ll~-~~~~~v~~~a~~~L 398 (554)
.+..+...+. .++.+|.......|
T Consensus 593 ~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 593 VLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhCchHHHHHHHHHhc
Confidence 2444555553 34566665544443
No 268
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=83.65 E-value=28 Score=30.68 Aligned_cols=72 Identities=22% Similarity=0.231 Sum_probs=56.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhh
Q 008781 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (554)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (554)
..++.+++++.+++..++..|+..+..+....=.+ -...+|.++.+..++++.++..|...+..+....+..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 34677888888999999999999999887532111 1235899999999999999999999999997655443
No 269
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=70 Score=34.23 Aligned_cols=297 Identities=13% Similarity=0.070 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhcc--C-hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHH
Q 008781 79 AAKRATHVLAELAK--N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (554)
Q Consensus 79 ~~~~a~~~L~~l~~--~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 155 (554)
...-|++.++++.+ + +.-..-+.+.=+++.++..+++... -++.+++..+..+. .+.++...-
T Consensus 432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg------------fL~Srace~is~~e--eDfkd~~il 497 (970)
T COG5656 432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG------------FLKSRACEFISTIE--EDFKDNGIL 497 (970)
T ss_pred HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc------------chHHHHHHHHHHHH--HhcccchHH
Confidence 44556677776654 2 2222333444457777777787776 78889999999984 445555555
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRT 233 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (554)
..+.+...+.+++.+- .++-.|+-+|.-+..++ .....+.. .+.+..|+.+-+.-+.+....++..+..
T Consensus 498 l~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe 568 (970)
T COG5656 498 LEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVE 568 (970)
T ss_pred HHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 5566777777877544 78888888888887744 44433332 1223334444333344444433333322
Q ss_pred h-ccCCccchHHHHhcCCHHHHHHh----hcCC---C---HHHHHHHHHHHHHHhc------cChhhHHHHHHcCCHHHH
Q 008781 234 L-AFKNDENKNQIVECNALPTLILM----LRSE---D---SAIHYEAVGVIGNLVH------SSPNIKKEVLAAGALQPV 296 (554)
Q Consensus 234 l-~~~~~~~~~~~~~~~~~~~L~~l----l~~~---~---~~v~~~a~~~L~~L~~------~~~~~~~~~~~~~~l~~L 296 (554)
- +..=......++. .++..++++ +..+ + ++=+..|.+.|..+.+ ..+..-+. ......|.+
T Consensus 569 ~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le~slypvi 646 (970)
T COG5656 569 YFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LEVSLYPVI 646 (970)
T ss_pred HhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHH
Confidence 2 1110111112221 123333332 2222 1 1223444444444422 11111111 122334444
Q ss_pred HHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCC-HHHHHHHHHHHHHHhcCCCcchhhhhcCC
Q 008781 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGG 375 (554)
Q Consensus 297 ~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~v~~~a~~~L~~L~~~~~~~~~l~~~~~ 375 (554)
--++.+...+.-.+|+..+-+.+-...+. .-..-|+.+.+.+++.+.. ..-.+.+.-++.|+.... +..+.+.+.
T Consensus 647 ~Filkn~i~dfy~Ea~dildg~tf~skeI--~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG--~~ef~~~~~ 722 (970)
T COG5656 647 SFILKNEISDFYQEALDILDGYTFMSKEI--EPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG--KTEFMDAGI 722 (970)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhHHHHHh--hhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC--ccccccccc
Confidence 44455555667777777776664221111 0112345555555555554 356678888999987643 233333333
Q ss_pred H-----HHHHHHhcCCCh--hHHHHHHHHHHHcccC
Q 008781 376 L-----VPLLKLLDSKNG--SLQHNAAFALYGLADN 404 (554)
Q Consensus 376 l-----~~L~~ll~~~~~--~v~~~a~~~L~~l~~~ 404 (554)
. ......+.+.+. .=...++..+..+..+
T Consensus 723 y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 723 YGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred hhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 2 222334444433 3345566666665544
No 270
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.29 E-value=22 Score=29.62 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=70.3
Q ss_pred ccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHH
Q 008781 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPT 253 (554)
Q Consensus 175 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~ 253 (554)
..++|......+..+..= ... ...++..|.+-+++.++.++..|+..|-.+..+ .......+.+.++++.
T Consensus 18 ~~~dw~~ileicD~In~~---~~~------~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~ 88 (142)
T cd03569 18 GEPDLASILEICDMIRSK---DVQ------PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDE 88 (142)
T ss_pred CccCHHHHHHHHHHHhCC---CCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH
Confidence 345566666666666421 111 124567888889999999999999999988874 3456677788889999
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHhc
Q 008781 254 LILMLR-SEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 254 L~~ll~-~~~~~v~~~a~~~L~~L~~ 278 (554)
|..++. ..++.|+..++..+...+.
T Consensus 89 l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 89 LKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 999887 5678899999999988764
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.14 E-value=25 Score=28.95 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=68.5
Q ss_pred cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCcc-chHHHHhcCCHHHH
Q 008781 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTL 254 (554)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L 254 (554)
.++|+.....+..+..- .... ..++..|.+-++++++.++..|+..|-.+..+... ....+....++..+
T Consensus 15 ~~D~~~il~icd~I~~~---~~~~------k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 15 EPDWALNLELCDLINLK---PNGP------KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred CccHHHHHHHHHHHhCC---CCCH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 34456666666665432 1111 23467888889999999999999999999875444 56666666788889
Q ss_pred HHhhcC---CCHHHHHHHHHHHHHHhc
Q 008781 255 ILMLRS---EDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 255 ~~ll~~---~~~~v~~~a~~~L~~L~~ 278 (554)
++++.. .++.|+..++..+...+.
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 998875 478999999999988864
No 272
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.06 E-value=22 Score=30.52 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=70.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHc--CCHHHHHHHhccCC-hHHHHHHHHHHHHHh---cCCc
Q 008781 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLSSCC-SESQREAALLLGQFA---ATDS 323 (554)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~l~~L~~lL~~~~-~~~~~~a~~~L~nl~---~~~~ 323 (554)
.+..+..+|++.++.-|-.++..+.-++..++ .+.+.+. ..+..++.+++..+ ..+.+.++.+|..+. .+.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46677888989899889888888888765432 1333232 36778888888765 455667777777665 3344
Q ss_pred ccHHHHHHc---CCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 324 DCKVHIVQR---GAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 324 ~~~~~~~~~---~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
+..+.+... ++++.++.++++ ......++.+|..+..
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 544444433 344455555544 5667788888888765
No 273
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.62 E-value=1.9 Score=40.95 Aligned_cols=63 Identities=19% Similarity=0.096 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhccCCccchHHHHh
Q 008781 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (554)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 247 (554)
....++++|..++.++..+.+.||++.++.-+. +.+|-+++....|++++..++.+|++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 677999999999999999999999999888664 568899999999999999988888877654
No 274
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.83 E-value=77 Score=35.62 Aligned_cols=138 Identities=15% Similarity=0.170 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccc
Q 008781 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (554)
Q Consensus 343 ~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 422 (554)
++-++.+|..+...|+-.... .-..+.+...+.-+-=.|++.+.+||..++.+|..|....+....+.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~--yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~---------- 364 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKS--YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLE---------- 364 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHh--ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHH----------
Confidence 356789999999999987753 22345666667667677899999999999999999987744322211
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHH-hhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCC
Q 008781 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 501 (554)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 501 (554)
.+..++=.+++++. ++.+..|+...+..+..+.... ++...-+..+..++.+.
T Consensus 365 ---------------------lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~ 418 (1048)
T KOG2011|consen 365 ---------------------LFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDS 418 (1048)
T ss_pred ---------------------HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhcc
Confidence 13334456667766 5566777766666555442221 22333356788888899
Q ss_pred ChhHHHHHHHHHHHHHh
Q 008781 502 NPKQQLDGAVALFKLAN 518 (554)
Q Consensus 502 ~~~v~~~a~~~L~~L~~ 518 (554)
+++++..|..-|+.=..
T Consensus 419 ~r~~~~aa~~fl~~k~~ 435 (1048)
T KOG2011|consen 419 NRRVAVAAGEFLYKKLF 435 (1048)
T ss_pred CcchHHHHHHHHHHHhh
Confidence 99999888877765444
No 275
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=80.71 E-value=56 Score=31.48 Aligned_cols=121 Identities=20% Similarity=0.118 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcC-----------ChHHHHHhhc------CCCHHHHHHHHHHHHHhccCCccch
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEG-----------GIPPLVELLE------FTDTKVQRAAAGALRTLAFKNDENK 242 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~-----------~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~ 242 (554)
++|..|+.++...+.++++.+..+...- ....++..|- +.|+.-.-.|+.+|.++..+++..+
T Consensus 53 ~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~K 132 (312)
T PF04869_consen 53 DLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEAK 132 (312)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 8899999999999999999988776531 1223555444 3455555678889999998888777
Q ss_pred HHHHhc------------CCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhccChhhHHHHHHc-CCHHHHHHHh
Q 008781 243 NQIVEC------------NALPTLILMLR-----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLL 300 (554)
Q Consensus 243 ~~~~~~------------~~~~~L~~ll~-----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL 300 (554)
+...+- ..++.+..+|. ..++.++..-+..|.....+++.....++.. +.++.|+...
T Consensus 133 e~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 133 EQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHh
Confidence 765432 12444554443 3456677777777777777777777777765 4778888764
No 276
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.28 E-value=86 Score=33.36 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=108.3
Q ss_pred HhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhccC--hhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhc-C
Q 008781 246 VECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSS--PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA-T 321 (554)
Q Consensus 246 ~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~-~ 321 (554)
++.|+++.++. .+.-+...+....-.+|+...... ......++-.-.=+.+..-|+..+..++..|+..+.++-- .
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 45567776664 444333344444444555553211 1111222222233455666777899999999999988752 2
Q ss_pred Cccc----HHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHH-----hcCCChhHHH
Q 008781 322 DSDC----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-----LDSKNGSLQH 392 (554)
Q Consensus 322 ~~~~----~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~l-----l~~~~~~v~~ 392 (554)
+++. ...+++. -...+.++|.++.+.+|..|..-++.....- -.++-...+..++.- ..+...+||.
T Consensus 206 dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f---We~iP~~i~~~ll~kI~d~~a~dt~s~VR~ 281 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKF---WEMIPPTILIDLLKKITDELAFDTSSDVRC 281 (1005)
T ss_pred CCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence 3333 2223332 3577889999999999999888877765311 111111222222222 1344567887
Q ss_pred HHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHH
Q 008781 393 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 472 (554)
Q Consensus 393 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 472 (554)
.....|-.++.++.....+-. ++|++-..|.+....||.++...|
T Consensus 282 svf~gl~~~l~np~sh~~le~-----------------------------------~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 282 SVFKGLPMILDNPLSHPLLEQ-----------------------------------LLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred hHhcCcHHHHcCccchhHHHH-----------------------------------HHHhcchhhhccchhHHHHHHHHH
Confidence 777777777776654332211 256666667777777777776666
Q ss_pred Hhh
Q 008781 473 AHL 475 (554)
Q Consensus 473 ~~l 475 (554)
..+
T Consensus 327 l~i 329 (1005)
T KOG1949|consen 327 LKI 329 (1005)
T ss_pred HHH
Confidence 655
No 277
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.24 E-value=11 Score=31.56 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=70.4
Q ss_pred cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCc-cchHHHHhcCCHHHH
Q 008781 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTL 254 (554)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L 254 (554)
..+|.+.-..|..+..= .... ..++..|.+-+.+.++.++..|+..|-.+..+.. .....+.+.+++..|
T Consensus 15 ~~dw~~il~icD~I~~~---~~~~------k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL 85 (144)
T cd03568 15 SENWGLILDVCDKVKSD---ENGA------KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL 85 (144)
T ss_pred CcCHHHHHHHHHHHhcC---CccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 34566666666665542 1222 2356788888899999999999999999886433 456677788899999
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHHhc
Q 008781 255 ILMLRS-EDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 255 ~~ll~~-~~~~v~~~a~~~L~~L~~ 278 (554)
.+++.. .+..|+..++..+...+.
T Consensus 86 ~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 86 KKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHH
Confidence 999987 788999999999988864
No 278
>PRK09169 hypothetical protein; Validated
Probab=79.74 E-value=1.6e+02 Score=36.21 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHH-hcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 131 EVEKGSAFALGL-LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 131 ~v~~~a~~~L~~-l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
.....++..|.. ++.++..+..+-.. .+..+++-|+..... ..-+.+...|..-...++.....+....+.
T Consensus 179 ~~c~~aa~~lA~~la~~~~l~~al~~q-~va~~lnalSKwp~~-------~~cr~a~~~lA~rL~~~~~l~~~l~~q~va 250 (2316)
T PRK09169 179 TDCQTAAEQLADRLASDSRLLQAMDAQ-EVANALNALSKWPDS-------PRCRNAAERLAERLADEPGLLQSLRAQEVA 250 (2316)
T ss_pred hHHHHHHHHHHHHhccCHHHHHhcchH-HHHHHHHHHhcCCCc-------HHHHHHHHHHHHHHhcChHHHHhcCHHHHH
Confidence 334445555544 44777666554433 344555555544332 555666666666665555544333333333
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 246 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 246 (554)
..|-.+-+-++......+...|.......+..+..+-
T Consensus 251 ~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~ 287 (2316)
T PRK09169 251 LLLNALSKWPDDEACRQAAEALAARLAREPGLRLALD 287 (2316)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcC
Confidence 3333333445554444555555554443444444433
No 279
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=79.70 E-value=1.4e+02 Score=36.21 Aligned_cols=132 Identities=10% Similarity=0.120 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhc-C---ChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 008781 131 EVEKGSAFALGLLA-V---KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~---~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 206 (554)
.+...|+..|..++ . .++....-.+...+.++..++.+.... ++++.++.++.++...... .+ .
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~-------eVrE~ILeCv~qmI~s~~~---nI--k 1219 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV-------EIRELIIRCVSQMVLSRVN---NV--K 1219 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHHh---hh--h
Confidence 67778888888877 1 222111123345678888878755443 9999999999998763322 12 2
Q ss_pred CChHHHHHhhc----CCCHHHHHHHHHHHHHhccCCcc-----chHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHH
Q 008781 207 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDE-----NKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNL 276 (554)
Q Consensus 207 ~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~L 276 (554)
.|.+.++.++. +.++.+...|...+..+..+.-. ....+. .++..+..+.... +.++-..|+..|+++
T Consensus 1220 SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1220 SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 36666666664 45677888888888877642111 012222 2355555555433 466777788888766
No 280
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=79.31 E-value=26 Score=33.25 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=50.5
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccch-HHHHhcCCHHHHHHhhc------------CCCHHHHHHHHHHH
Q 008781 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLR------------SEDSAIHYEAVGVI 273 (554)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~------------~~~~~v~~~a~~~L 273 (554)
-++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-+.+. ++...+...+.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 367999999999999999999999999997433322 23667777666554443 23445666777777
Q ss_pred HHHh
Q 008781 274 GNLV 277 (554)
Q Consensus 274 ~~L~ 277 (554)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 281
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=79.12 E-value=36 Score=28.29 Aligned_cols=96 Identities=9% Similarity=0.077 Sum_probs=70.8
Q ss_pred cccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHH
Q 008781 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALP 252 (554)
Q Consensus 174 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~ 252 (554)
...++|......|..+.. . ....+ .++..+.+-+.+.++.++..|+..|-.+..+ .......+.+.+++.
T Consensus 14 l~~~dw~~ileicD~In~--~-~~~~k------~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--E-PEGPQ------LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--C-CccHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 344566777777777743 1 22222 3566888889999999999999999888764 345667788888999
Q ss_pred HHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 008781 253 TLILMLRS------EDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 253 ~L~~ll~~------~~~~v~~~a~~~L~~L~~ 278 (554)
.+++++.. .+..|+..++..+...+.
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999853 468899999988887753
No 282
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=78.20 E-value=76 Score=31.56 Aligned_cols=289 Identities=15% Similarity=0.107 Sum_probs=151.9
Q ss_pred hhhhhHHHHHHHHHhhhhccc-----hHhhHHHHHHHHHHHHHhccChhhHHHHHhCC---ChHHHHHhhcCCCCCcccc
Q 008781 52 RQALLSEVSAQVNVLNTTFSW-----LEADRAAAKRATHVLAELAKNEEVVNWIVEGG---AVPALVKHLQAPPTSEADR 123 (554)
Q Consensus 52 ~~~~~~~v~~~v~~L~~~~~~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g---~v~~Lv~lL~~~~~~~~~~ 123 (554)
...+...++.+++.+...+.. +..+..+..+|++.|..+..+++....+-..- .+...+..+..++.
T Consensus 30 ~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~----- 104 (372)
T PF12231_consen 30 RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS----- 104 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC-----
Confidence 344556666666666655443 11366788999999999998887777665432 45566666655554
Q ss_pred CCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHH
Q 008781 124 NLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (554)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 203 (554)
+..+....+++|..=..++. +.....+..++..+..-.+.-. ...+....+.++.++....|.. .+
T Consensus 105 -----~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~---s~si~~erL~i~~~ll~q~p~~--M~ 170 (372)
T PF12231_consen 105 -----PKSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFP---SKSIISERLNIYKRLLSQFPQQ--MI 170 (372)
T ss_pred -----CHHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCC---chhHHHHHHHHHHHHHHHHHHH--HH
Confidence 22677777777765443332 3334445555555544322100 0178888999999998866543 22
Q ss_pred Hh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccch---HH---HHhc----C-----CHHHHHHhhcC-CCHHHH
Q 008781 204 RM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---NQ---IVEC----N-----ALPTLILMLRS-EDSAIH 266 (554)
Q Consensus 204 ~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~---~~---~~~~----~-----~~~~L~~ll~~-~~~~v~ 266 (554)
.. ...++.++..+-+....++..|...+..+...-+.++ .. ..+. + +.+.+..++.+ ++....
T Consensus 171 ~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a 250 (372)
T PF12231_consen 171 KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLA 250 (372)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchH
Confidence 22 2367778777777777777776666555542111111 10 1111 1 22234455555 232222
Q ss_pred HHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhc---CCcccHHHHHHcCCHHHHHHHhC
Q 008781 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQ 343 (554)
Q Consensus 267 ~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~L~~~l~ 343 (554)
.....++.-|.. ++....--.-...+...-..+.++++.++..|..+-..+.. .++......+.. +..++..-++
T Consensus 251 ~~iW~~~i~LL~-~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~ 328 (372)
T PF12231_consen 251 MQIWSVVILLLG-SSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLR 328 (372)
T ss_pred HHHHHHHHHHhC-CchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhC
Confidence 222223333322 22111111112244444556677888888888776665542 112221222221 2333444444
Q ss_pred C-CCH----HHHHHHHHHHHHHh
Q 008781 344 S-PDV----QLREMSAFALGRLA 361 (554)
Q Consensus 344 ~-~~~----~v~~~a~~~L~~L~ 361 (554)
. ... .++..++..++++.
T Consensus 329 ~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 329 REKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred ccccccccHHHHHHHHHHHhchH
Confidence 2 222 67777777777775
No 283
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=76.76 E-value=20 Score=28.07 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHH
Q 008781 467 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 507 (554)
Q Consensus 467 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~ 507 (554)
..++.+..|+..|+....+++.|+++.|+.++.+.|.++..
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 56778889999999999999999999999999999887754
No 284
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=75.84 E-value=94 Score=31.42 Aligned_cols=134 Identities=17% Similarity=0.223 Sum_probs=88.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCh---hhHHHHHHcCCHHHHHHHhccC-----C-hHHHH-HHHHHHHHHhcC
Q 008781 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSP---NIKKEVLAAGALQPVIGLLSSC-----C-SESQR-EAALLLGQFAAT 321 (554)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~---~~~~~~~~~~~l~~L~~lL~~~-----~-~~~~~-~a~~~L~nl~~~ 321 (554)
..+..++...+++-+..++-....++.+.+ ..++.+.+.-+.+.+-.++.+. . +.+-+ -+..+|.-+|+.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 346666777777777788777777776533 2356677777778888888652 1 33333 344566666643
Q ss_pred CcccH--HHHHHcCCHHHHHHHhCC-CCH------HHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCCh
Q 008781 322 DSDCK--VHIVQRGAVRPLIEMLQS-PDV------QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 388 (554)
Q Consensus 322 ~~~~~--~~~~~~~~~~~L~~~l~~-~~~------~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 388 (554)
++.. ..++ +-+|.+.+++.. .++ .+.+.+-.+|..++..+.....++..|+++.+.++-.-++.
T Consensus 94 -pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~ 166 (698)
T KOG2611|consen 94 -PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDG 166 (698)
T ss_pred -hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCC
Confidence 3221 2232 347888888873 222 37888999999999988888889999999999876544443
No 285
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=74.67 E-value=46 Score=29.04 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=54.3
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC-CCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc
Q 008781 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQD-MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 406 (554)
Q Consensus 333 ~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 406 (554)
..+|.+++-|...+...+--|...+..|... ...+..-+-...+.++.+.|++.++++...++.+|..|+...+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4677888888876666666777777777665 3333333445678888899999999999999999999965543
No 286
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=74.07 E-value=65 Score=33.56 Aligned_cols=168 Identities=19% Similarity=0.091 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--C---------CCHHHHHHHHHHHHHhccCCccchHHHHhc
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--F---------TDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 248 (554)
++...|-..|..+...- -+...+..|+.+.. . .++.++...+..|..-... .-.-.
T Consensus 252 ~V~~~ae~~LKr~~~~~-------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A------a~~~~ 318 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSL-------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA------ATSFP 318 (501)
T ss_pred hHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH------HhCCc
Confidence 78888888888877641 22344556666555 2 3556777555555542110 00112
Q ss_pred CCHHHHHHhhcCC--CHHHHHHHHHHH---HHHhccChhhH----HHHHHcCCHHHHHH----HhccCChHHHHHHHHHH
Q 008781 249 NALPTLILMLRSE--DSAIHYEAVGVI---GNLVHSSPNIK----KEVLAAGALQPVIG----LLSSCCSESQREAALLL 315 (554)
Q Consensus 249 ~~~~~L~~ll~~~--~~~v~~~a~~~L---~~L~~~~~~~~----~~~~~~~~l~~L~~----lL~~~~~~~~~~a~~~L 315 (554)
..+..+..-+.++ +..++..++..+ .....+..... ...+..++.+.+-. --...+...+..+..+|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 2344444445555 567777777777 44443322221 12223344444310 01123457788899999
Q ss_pred HHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 316 ~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
+.|+...+... .-+.+++..|..-|.+++++++...-.+|..|+.
T Consensus 399 G~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 399 GLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99997665541 1346678888888888889999999999998875
No 287
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=73.66 E-value=38 Score=28.91 Aligned_cols=140 Identities=16% Similarity=0.060 Sum_probs=75.8
Q ss_pred CHHHHHHHhcCC-ChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHH--HHHHH-HHHHHHHhhchH
Q 008781 375 GLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC--VAKTL-KRLEEKIHGRVL 450 (554)
Q Consensus 375 ~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~--~~~~~-~~l~~~~~~~~l 450 (554)
.++.|+++++.+ ++.+|..+..+|+.|-.-++.+.+....+.-..-... ......+- ..... ...++.....++
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ee~y~~vvi 88 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSEN--SNDESTDISLPMMGISPSSEEYYPTVVI 88 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcccccc--ccccchhhHHhhccCCCchHHHHHHHHH
Confidence 355667777554 5899999999999995444433332211100000000 00000000 00000 023344555567
Q ss_pred HHHHHHHhhCC-HHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 451 NHLLYLMRVAE-KGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 451 ~~L~~ll~~~~-~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
..|+..++++. ..-+..++.++.++... ..+.. .-...+|.++..+.+.++..++.-..-|..|..
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~--~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVP--YLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchh--HHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88888887744 33444667777666432 22322 223368999999997777888887777777654
No 288
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=72.27 E-value=27 Score=28.73 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=59.2
Q ss_pred CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcc-cHHHHHHcCCHHHHHHHhCC---CCHHHHHHHHHHHHHHhcCC
Q 008781 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 292 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~~~~~~~~~~L~~~l~~---~~~~v~~~a~~~L~~L~~~~ 364 (554)
++..|..-|.++++.++..|+.+|-.+...... +...+....++..|+.++.. .++.++..++..+.+.+..-
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 567788888899999999999999888866544 56667777888889999875 47789999999999988643
No 289
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=72.17 E-value=1.1e+02 Score=38.07 Aligned_cols=199 Identities=18% Similarity=0.129 Sum_probs=109.4
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChh
Q 008781 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (554)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (554)
..+.+.+..+...+.+..-.++..+...+++++..++...-.......+..+-.+..+.-..+...+..-+..+....+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 44445556666666667777888888888888876653322222221222222222233333333333333333222222
Q ss_pred hHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHh
Q 008781 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 361 (554)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~ 361 (554)
.... .-...+..+...+.+..+.+...+..+++.|+...-.-.....+ ..++.+.+.+.+ .+..-+.++.+++.++.
T Consensus 641 ~i~~-~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 641 LISP-YVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHh-hcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 2111 12345567777778888888888999999998654422233334 566777777764 55667889999999998
Q ss_pred cCCCc--chhhhhcCCHHHHHHHhcCCC-hhHHHHHHHHHHHccc
Q 008781 362 QDMHN--QAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLAD 403 (554)
Q Consensus 362 ~~~~~--~~~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~ 403 (554)
..... ........++..+.+.+.... ..++..+...+.++-.
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 65432 111222334455555554432 4455566666665433
No 290
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.52 E-value=92 Score=35.92 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC----C---CHHHHHHHHHHHHHhccCCccchHHHHhcCCHH
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 252 (554)
+++...+.++.++....-+ ..-.| -+.+.+++.+ . ...+.+.+..+|+-++.+.-.....-.-.++++
T Consensus 857 evr~~sl~~l~silet~ge----~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGE----HLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccch----hhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 7788888888888763222 11123 4555555542 2 345667777888887753211111112234566
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHh
Q 008781 253 TLILMLR-SEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 253 ~L~~ll~-~~~~~v~~~a~~~L~~L~ 277 (554)
.+....+ ..|-.+-..|+..+|+++
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHH
Confidence 6666555 456677778888888875
No 291
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=70.96 E-value=42 Score=31.86 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=47.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhH-HHHHHcCCHHHHHHHh----c--------cCChHHHHHHHHHHH
Q 008781 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLL----S--------SCCSESQREAALLLG 316 (554)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL----~--------~~~~~~~~~a~~~L~ 316 (554)
++|.++.++.+.++.++..++.+|..+....+... ..+...|..+.+-..+ . +....+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 58899999999999999999999999987544322 2255666655544443 2 223445566666666
Q ss_pred HHh
Q 008781 317 QFA 319 (554)
Q Consensus 317 nl~ 319 (554)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 664
No 292
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.71 E-value=1.7e+02 Score=31.98 Aligned_cols=336 Identities=14% Similarity=0.133 Sum_probs=154.3
Q ss_pred HHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccch
Q 008781 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242 (554)
Q Consensus 163 ~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 242 (554)
-.+|.....++..+ .+...|+..|.+.+. .+.....+...+.+..+.+...- -|++. ..+ -
T Consensus 294 W~LL~~~s~~~kyD---~Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~~i~e~Vvl-------------pN~~l-R~e-D 354 (960)
T KOG1992|consen 294 WNLLVSTSPDTKYD---YLVSKALQFLTSVSR-RPHYAELFEGENVLAQICEKVVL-------------PNLIL-REE-D 354 (960)
T ss_pred HHHHHhcCCCccHH---HHHHHHHHHHHHHHh-hhhhHhhhcchHHHHHHHHhhcc-------------ccccc-chh-h
Confidence 35555544444333 666677777777776 44444444444444444444322 23332 111 1
Q ss_pred HHHHhcCCHHHHHHhhcCCCHH-HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-Hhc--cCChHHHHHHHHHHHHH
Q 008781 243 NQIVECNALPTLILMLRSEDSA-IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLS--SCCSESQREAALLLGQF 318 (554)
Q Consensus 243 ~~~~~~~~~~~L~~ll~~~~~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~-lL~--~~~~~~~~~a~~~L~nl 318 (554)
..+-+.+-++.+-+-+..+|.+ -|+.|+..+..|+...+.....++.. .+..+++ ... +.++.-+..+......+
T Consensus 355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~tal 433 (960)
T KOG1992|consen 355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTAL 433 (960)
T ss_pred HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHH
Confidence 2333445677777777755554 46677778888877654433333222 2222222 222 23455555666666666
Q ss_pred hcCCcccHHHHHHc----CCH----HHHHHHhCC----CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCC
Q 008781 319 AATDSDCKVHIVQR----GAV----RPLIEMLQS----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 386 (554)
Q Consensus 319 ~~~~~~~~~~~~~~----~~~----~~L~~~l~~----~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~ 386 (554)
+......+.-+... ++. ..+..-|.+ ..+-++..++..+... ++.-+...+ ...++.+++.+..+
T Consensus 434 aik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~F-R~ql~~~~l--m~~~p~li~~L~a~ 510 (960)
T KOG1992|consen 434 AIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTF-RNQLGKEHL--MALLPRLIRFLEAE 510 (960)
T ss_pred HhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeee-cccCChHHH--HHHHHHHHHhccCc
Confidence 54322211111100 111 111222222 2223333322222111 111111112 23688899999999
Q ss_pred ChhHHHHHHHHHHHcccCCcc--hhHHHhhCcc---ccccchhhhhhh-----hHHHHHHHHHHHHHH----H---hhch
Q 008781 387 NGSLQHNAAFALYGLADNEDN--VADFIRVGGV---QKLQDGEFIVQA-----TKDCVAKTLKRLEEK----I---HGRV 449 (554)
Q Consensus 387 ~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~i---~~L~~~~~~~~~-----~~~~~~~~~~~l~~~----~---~~~~ 449 (554)
+..+...|+.++..+..-.++ ...+...... ..++...|.... --+++.+++.+.-.+ + -+..
T Consensus 511 s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~ 590 (960)
T KOG1992|consen 511 SRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPEL 590 (960)
T ss_pred chHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHH
Confidence 999999999999887543222 2222222211 223333332111 112333333332221 1 3334
Q ss_pred HHHHHHHHhh-----CCHHH---HHHHHHHH-HhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 450 LNHLLYLMRV-----AEKGV---QRRVALAL-AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 450 l~~L~~ll~~-----~~~~v---~~~a~~~L-~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+..|.+++.. .+|.. -.++.+++ ...|......-.-.+...+|.+...+..+-.+.--.+...|..|..++
T Consensus 591 l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 591 LRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445544432 23322 22333333 333444433333345556677777776555555556666677666654
Q ss_pred C
Q 008781 521 T 521 (554)
Q Consensus 521 ~ 521 (554)
.
T Consensus 671 ~ 671 (960)
T KOG1992|consen 671 S 671 (960)
T ss_pred C
Confidence 3
No 293
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=70.69 E-value=37 Score=27.92 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=56.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhc
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSED--SAIHYEAVGVIGNLVH 278 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~a~~~L~~L~~ 278 (554)
++..|.+-++++++.++..|+..|-.+..+ .......+.+.++++.|..++.+.. +.|+..++..+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999875 3456677778889999999888543 3489999988887754
No 294
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=70.59 E-value=19 Score=32.29 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=53.5
Q ss_pred hhHHHHHHcCChHHHHHHHhccccCc----------cccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 008781 148 EHQQLIVDNGALSHLVNLLKRHMDSN----------CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (554)
Q Consensus 148 ~~~~~i~~~g~l~~L~~lL~~~~~~~----------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (554)
..++.+...|++..++.+|+.+.... ......++...|...|..+|.++..++..+... ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 45667778899999999998865543 111123788899999999999999888877652 333333332
Q ss_pred CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
......-..+..++..+..++.+....+.+. .+..++.++..... ...-+..|..++.
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr--~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGR--QPRYLDFLSSLCV 169 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCC--ChHHHHHHhhhcc
Confidence 2211112345566677776666666555544 37888888875332 1223445555543
No 295
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.99 E-value=33 Score=28.67 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=59.4
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcC
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~ 521 (554)
++..|..-+.+.++.++..|+..|-.+..+ ......+.....+..|..++.. .++.|+......+...+..-.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 467777888889999999999999998544 3355667777888999999987 888999999999998876544
No 296
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.34 E-value=2.6e+02 Score=33.77 Aligned_cols=249 Identities=16% Similarity=0.075 Sum_probs=118.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHH-HHHHHHhcCCcccHHHH
Q 008781 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA-LLLGQFAATDSDCKVHI 329 (554)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~-~~L~nl~~~~~~~~~~~ 329 (554)
...++..+...++..+..+..++..++...+.. ..-.+..+.++.-+.+..+.+.+..- .+++-+-.........-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 445566667788888888999998887542221 11123445566666666555554332 23333321111100000
Q ss_pred HHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCCc-chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc
Q 008781 330 VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 330 ~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
.....+..+..+.++ ..+.++.+++.++.-++..... ...+++ ..+..+..++-+..+. .......+.........
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~-~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTS-HVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcc-hhhhhhhhccccccchh
Confidence 112345667777776 4568999999999888754322 222222 2233334444332221 11111122222211222
Q ss_pred hhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008781 408 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 487 (554)
Q Consensus 408 ~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 487 (554)
...+...-|-+ | .++.....+ .......+-...-++..+++.++.++..++.++...... .+.-
T Consensus 1033 ~~alittlgpe-L-~~N~~~d~t------------~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~ 1096 (2067)
T KOG1822|consen 1033 EDALITTLGPE-L-GPNGDKDST------------STLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNL 1096 (2067)
T ss_pred HHHHHHhcccc-c-CCCCcccch------------hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccH
Confidence 22222211100 0 000000000 001111222223344557889999999999988333221 1111
Q ss_pred cCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 488 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 488 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
...+..|..++.+..--.|+....+|..+....
T Consensus 1097 ~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1097 DSLVLQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred HHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 123667777777777777777777777776543
No 297
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=69.06 E-value=2.3e+02 Score=34.57 Aligned_cols=269 Identities=14% Similarity=0.152 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHhcc----ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 008781 76 DRAAAKRATHVLAELAK----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~----~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (554)
+..+...|+..|+.++. .++....=.+...+..|..++..... .++++..+.++.++... +.
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~-----------~eVrE~ILeCv~qmI~s---~~ 1215 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNA-----------VEIRELIIRCVSQMVLS---RV 1215 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHHHHHHHHH---HH
Confidence 34577777887777765 12322222345567888887775433 28999999999988721 11
Q ss_pred HHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHH---HHHhcCChHHHHHhhcCC-CHHHHHHH
Q 008781 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT---RVRMEGGIPPLVELLEFT-DTKVQRAA 227 (554)
Q Consensus 152 ~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~~i~~L~~ll~~~-~~~v~~~a 227 (554)
.-+.. +-+.+..++.....+.. ..+...|..++..++.+.-..-. .-.-..++..+..+.+.. +.++-..|
T Consensus 1216 ~nIkS-GWktIF~VLs~aa~d~~----e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~A 1290 (1780)
T PLN03076 1216 NNVKS-GWKSMFMVFTTAAYDDH----KNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNA 1290 (1780)
T ss_pred hhhhc-CcHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHH
Confidence 11223 55666666663322111 17888888888877753221000 001123445555555433 45666677
Q ss_pred HHHHHHhccC---Cc------------------------cchHHHH-----hcCCHHHHH---HhhcCCCHHHHHHHHHH
Q 008781 228 AGALRTLAFK---ND------------------------ENKNQIV-----ECNALPTLI---LMLRSEDSAIHYEAVGV 272 (554)
Q Consensus 228 ~~~L~~l~~~---~~------------------------~~~~~~~-----~~~~~~~L~---~ll~~~~~~v~~~a~~~ 272 (554)
+..|++++.. .+ .....+. ....++.|. .+..++..+||..|+.+
T Consensus 1291 I~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqt 1370 (1780)
T PLN03076 1291 IAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQV 1370 (1780)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7777755210 00 0000000 011233333 33457889999999999
Q ss_pred HHHHhcc-----ChhhHHHHHHcCCHHHHHHHhccC-------------------ChH----HHHHHHHHHHHHhcCCcc
Q 008781 273 IGNLVHS-----SPNIKKEVLAAGALQPVIGLLSSC-------------------CSE----SQREAALLLGQFAATDSD 324 (554)
Q Consensus 273 L~~L~~~-----~~~~~~~~~~~~~l~~L~~lL~~~-------------------~~~----~~~~a~~~L~nl~~~~~~ 324 (554)
|-.+... ++..-..+. .+++-+++..++.. +.+ ....+..+|.++..--..
T Consensus 1371 LF~iL~~yG~~Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~ 1449 (1780)
T PLN03076 1371 LFDTLRNHGHLFSLPLWERVF-ESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVK 1449 (1780)
T ss_pred HHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8776532 112222222 24555555554321 001 112223344444321111
Q ss_pred cHHHH--HHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC
Q 008781 325 CKVHI--VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 325 ~~~~~--~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~ 364 (554)
+-..+ +-.+++..|...+..++..+...+..+|.+|....
T Consensus 1450 fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1450 FYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 11111 11344555555566778888889999999987643
No 298
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=68.18 E-value=2.7e+02 Score=33.37 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=46.7
Q ss_pred cCCHHHHHHH----hCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC
Q 008781 332 RGAVRPLIEM----LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 332 ~~~~~~L~~~----l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (554)
.+.++.++.+ +.+.++.++.-+......+-...+. ..+..++..|+..+-+++..-...|+.+|..|+..
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK 503 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 3455665555 4588999999888888887655422 23344677787777666665557888999998863
No 299
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.96 E-value=6.3 Score=37.59 Aligned_cols=65 Identities=8% Similarity=-0.046 Sum_probs=53.4
Q ss_pred HHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh
Q 008781 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (554)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 205 (554)
+..+.++++| ..++.++.+.+.|+++.++.-..-++..+ -+++..+.++.+|..++.+++..+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nP------fi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNP------FIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCCh------HHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 4677999999 99999999999999999876554433322 89999999999999999888877654
No 300
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=67.87 E-value=1.1e+02 Score=29.70 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcC--ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (554)
.+|..|+.++..+..++.....++..+ .+..|+++++....- +.+++..|+.+|..++.+.......+.
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v-----~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKV-----PMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 677777777777777777778888777 899999999877532 238999999999999986665555433
No 301
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.65 E-value=1.1e+02 Score=28.69 Aligned_cols=208 Identities=11% Similarity=0.069 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
.+|..|...|+.+. .-+.. .....-+..|+.+..+.-.+. .....++..+..|.....-.... ....+
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~------~~~~~~l~gl~~L~~~~~~~~~~--~~~i~ 82 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDH------ACVQPALKGLLALVKMKNFSPES--AVKIL 82 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccH------hhHHHHHHHHHHHHhCcCCChhh--HHHHH
Confidence 89999999999877 33321 122222455555554432221 55555577777776422211111 11222
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
..+.+-.. +-....|..+...+..+..+....... ...+.+..+++.+.. .||.-...+...+..+...-+-
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~---- 157 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI---- 157 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc----
Confidence 33332221 223467888888888887632222211 223567777777764 4787777777777777543221
Q ss_pred HHHcCCHHHHHHHhcc---------C-Ch--HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHH
Q 008781 287 VLAAGALQPVIGLLSS---------C-CS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354 (554)
Q Consensus 287 ~~~~~~l~~L~~lL~~---------~-~~--~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~ 354 (554)
....+.+...+.. + ++ -.+..-...|.+.-...+.. ..-.+|.|++-|.++.+.++..++
T Consensus 158 ---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 158 ---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred ---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHHH
Confidence 2233334444321 1 11 13334444555544333332 234689999999999999999999
Q ss_pred HHHHHHhc
Q 008781 355 FALGRLAQ 362 (554)
Q Consensus 355 ~~L~~L~~ 362 (554)
.+|..++.
T Consensus 230 ~tL~~c~~ 237 (262)
T PF14500_consen 230 QTLKACIE 237 (262)
T ss_pred HHHHHHHH
Confidence 99998875
No 302
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=66.68 E-value=1.1e+02 Score=28.35 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhhhhccch-----HhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchH
Q 008781 56 LSEVSAQVNVLNTTFSWL-----EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (554)
Q Consensus 56 ~~~v~~~v~~L~~~~~~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~ 130 (554)
...+|.++..|....... +.+......|+..|+. +.+..+.+.++++++.++...-. .+..
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq----------~re~~A~~~li~l~~~~~~~~~~----l~GD 95 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQ----------FREERALPPLIRLFSQDDDFLED----LFGD 95 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHH----------HhhhhhHHHHHHHHcCCcchHHH----HHcc
Confidence 345677777776654221 1112234455555544 34456789999999766540000 0000
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (554)
-+-..-..+|..+ ..|-++.|.+++.++.... -++..|+.+|..+...++..|..+.
T Consensus 96 ~~tE~l~~ilasv-----------~~G~~~~L~~li~~~~~~~------yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 96 FITEDLPRILASV-----------GDGDIEPLKELIEDPDADE------YVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred hhHhHHHHHHHHH-----------hCCCHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 1222222333333 3466888999998876643 7888899999999998887776654
No 303
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=66.55 E-value=1.2e+02 Score=28.92 Aligned_cols=126 Identities=18% Similarity=0.240 Sum_probs=82.5
Q ss_pred HHHHHhcCChHHHHHhhcC-----------------------CCHHHHHHHHHHHHHhccCCccch--------------
Q 008781 200 KTRVRMEGGIPPLVELLEF-----------------------TDTKVQRAAAGALRTLAFKNDENK-------------- 242 (554)
Q Consensus 200 ~~~~~~~~~i~~L~~ll~~-----------------------~~~~v~~~a~~~L~~l~~~~~~~~-------------- 242 (554)
+..+.+.|.+|.|-.++.. ++..++.+-++.+.+++.++....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3455666777777666541 112366777788888876321111
Q ss_pred -------HHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhccChh--hHHHHHHcCCHHHHHHHhccCC---hHHH
Q 008781 243 -------NQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPN--IKKEVLAAGALQPVIGLLSSCC---SESQ 308 (554)
Q Consensus 243 -------~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~l~~L~~lL~~~~---~~~~ 308 (554)
..--+.|.+..+++.+..+ +...|-+.+.++-....+.+. .+..+.+.|+++.++..+-++. ..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 1112347788888877643 567788999999888876444 3456778999999999876543 3566
Q ss_pred HHHHHHHHHHhcCCccc
Q 008781 309 REAALLLGQFAATDSDC 325 (554)
Q Consensus 309 ~~a~~~L~nl~~~~~~~ 325 (554)
....-.|+.|...+...
T Consensus 162 Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHHHCCCHHH
Confidence 67777888888766543
No 304
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.99 E-value=1.4e+02 Score=31.16 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHh--ccc-cCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK--RHM-DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~--~~~-~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (554)
+|...|-..|-.+..+-+ +...+..|..+.. ... ..........++...+..|..=.. . ......
T Consensus 252 ~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----A--a~~~~~ 319 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----A--ATSFPN 319 (501)
T ss_pred hHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----H--HhCCcc
Confidence 788888888888883311 2234566666666 211 111112222566665555544211 0 011123
Q ss_pred ChHHHHHhhcCC--CHHHHHHHHHHH---HHhccCCccchHHHHhcCCHHHHHHhhc--------CCCHHHHHHHHHHHH
Q 008781 208 GIPPLVELLEFT--DTKVQRAAAGAL---RTLAFKNDENKNQIVECNALPTLILMLR--------SEDSAIHYEAVGVIG 274 (554)
Q Consensus 208 ~i~~L~~ll~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~~~~~~L~~ll~--------~~~~~v~~~a~~~L~ 274 (554)
.+..+...+.++ +..++..++..+ .....+.....-..+...+...+...+. ..+...|..+-.+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 344444455555 556777776666 4444432222222222222223333331 346789999999999
Q ss_pred HHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhc
Q 008781 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (554)
Q Consensus 275 ~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 320 (554)
.|+...+..- .-+-+.+..|..-|.++.++++...-.+|+.++.
T Consensus 400 ~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 400 LLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9998766531 1124577788888888888898888888888874
No 305
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.04 E-value=1.2e+02 Score=28.34 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=93.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-------ccchHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHH
Q 008781 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-------DENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGN 275 (554)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~ 275 (554)
|..+.+++-+.++ .....++..|..++... .+.+-.+.-...+|.++..+.+++ ......++..|..
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 3334444555443 34455566666665421 112222222345777777776665 2445566677777
Q ss_pred HhccChhhHHHHHHcCCHHHHHHHhccCC----hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHH
Q 008781 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (554)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~ 351 (554)
++.... .+.+..++.....+. .+....++..|..-. .++. +...+..++.+|.++.+.++.
T Consensus 142 ~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~-----~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 142 VAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH-----EFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh-----HHHHHHHHHHHHhCCcHHHHH
Confidence 764311 123333444333222 233334444444321 1222 233567899999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChh
Q 008781 352 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS 389 (554)
Q Consensus 352 ~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 389 (554)
..+.+|..+....+.+.. .....+.+++++++.+...
T Consensus 207 ~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~ 243 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWM 243 (262)
T ss_pred HHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHH
Confidence 999999999887666544 4455799999999876554
No 306
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.92 E-value=2.5e+02 Score=31.86 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=93.9
Q ss_pred cCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCccc-HHHHHHcCCHHH
Q 008781 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRP 337 (554)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-~~~~~~~~~~~~ 337 (554)
++-.+++|..++..|+-.....| ..+++...+..+--.|.+.+.+||..++.+|..|...+... .....-..+=..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 46689999999999998876665 45777778888888899999999999999999997654332 222333445567
Q ss_pred HHHHh-CCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 008781 338 LIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 400 (554)
Q Consensus 338 L~~~l-~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 400 (554)
++++. .+-+..|+..++..+.-+.. ..+....-+.++..++.+.+..++.+|...+..
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~-----~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSS-----SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhc-----ccccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 77777 34555666555544443322 223344457778888988898888887776654
No 307
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.89 E-value=38 Score=28.27 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=57.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHHcCCHHHHHHHhcc-CChHHHHHHHHHHHHHh
Q 008781 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFA 319 (554)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~ 319 (554)
.++..|.+-+.+.++.++..|+..|-.++.+ .......+.+.+++..|..++.. .++.++..++..+...+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 3577888888899999999999999888775 34456777788999999999874 56788888888887776
No 308
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=64.53 E-value=1.7e+02 Score=29.93 Aligned_cols=244 Identities=13% Similarity=0.111 Sum_probs=118.4
Q ss_pred hHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhc--c---C------hhhHHHHHhCCChHHHHHhhcCCCCCccccC
Q 008781 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELA--K---N------EEVVNWIVEGGAVPALVKHLQAPPTSEADRN 124 (554)
Q Consensus 56 ~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~--~---~------~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~ 124 (554)
-....++++.+...++.+. .--.|..|++.|..+- . + |..-..+-+..++...+.++-..... +
T Consensus 92 q~~lnevir~ltqvis~sg-~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~Gkk----G 166 (589)
T PF11229_consen 92 QSRLNEVIRTLTQVISFSG-VIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKK----G 166 (589)
T ss_pred HHHHHHHHHHHHHHHcCcc-ccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHcccc----C
Confidence 3345555555555444333 3446777888877751 1 0 11222233445566666655443321 2
Q ss_pred CCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH
Q 008781 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (554)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (554)
|....+.....++.-++....+-.+- -+--.-.+.+|+++ ...+ +++..|+.+...=+. .......+.
T Consensus 167 pe~vpp~lvkvvl~~ia~vgeS~qyP-PVNWaalLsPLMRl---nfGe-------Evq~lCLeiAvtQaq-SSqsAa~fL 234 (589)
T PF11229_consen 167 PESVPPSLVKVVLKPIATVGESYQYP-PVNWAALLSPLMRL---NFGE-------EVQQLCLEIAVTQAQ-SSQSAAMFL 234 (589)
T ss_pred CccCCHHHHHHHHHHhhhcCCCCCCC-CccHHHHhhHHHhc---cccH-------HHHHHHHHHHHHhcc-ccccHHHHH
Confidence 33334455555555554433111100 00001124445444 2222 888888887666665 333444555
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhh
Q 008781 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (554)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (554)
..-..|.++.-+.. ..+.+-+.-+.....+- ++..+.+.+.=++..+-..-...++++...++.-|..-... +.-
T Consensus 235 g~WlsPpli~sLs~---~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKl-P~P 310 (589)
T PF11229_consen 235 GSWLSPPLIHSLSV---NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKL-PSP 310 (589)
T ss_pred HhhcCcchhhhhhH---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcC-CCh
Confidence 55666666665543 33333333333333322 23334455432233333333345678888888777764332 222
Q ss_pred HHHHHH--cCCHHHHHHHhcc----CChHHHHHHHHHHHHHhc
Q 008781 284 KKEVLA--AGALQPVIGLLSS----CCSESQREAALLLGQFAA 320 (554)
Q Consensus 284 ~~~~~~--~~~l~~L~~lL~~----~~~~~~~~a~~~L~nl~~ 320 (554)
.+.... ......+..++-+ .+.+.-...+.||+.++.
T Consensus 311 ~~h~Ws~Lc~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 311 AQHCWSLLCETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred hhHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 222222 3455666666633 334555667778888864
No 309
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=62.01 E-value=1.6e+02 Score=28.73 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHhccCCccc-hHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 008781 219 TDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (554)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (554)
.+++-....++++..+..+.+.. .... ....-..++.++.+. ...+|..|..++..+...++.. +...++..
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~ 248 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISG 248 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHH
Confidence 34555566677777666432221 1111 223456788888877 8999999999999998776653 33345566
Q ss_pred HHHHhcc
Q 008781 296 VIGLLSS 302 (554)
Q Consensus 296 L~~lL~~ 302 (554)
+-.++..
T Consensus 249 l~~~l~~ 255 (339)
T PF12074_consen 249 LWKWLSS 255 (339)
T ss_pred HHHHHHh
Confidence 6666654
No 310
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=60.95 E-value=1.5e+02 Score=27.84 Aligned_cols=174 Identities=22% Similarity=0.210 Sum_probs=102.4
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc--------chhhhhcCCHHHHHHHhcCCC----hhHHHHHHHHHHH
Q 008781 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--------QAGIAHNGGLVPLLKLLDSKN----GSLQHNAAFALYG 400 (554)
Q Consensus 333 ~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~--------~~~l~~~~~l~~L~~ll~~~~----~~v~~~a~~~L~~ 400 (554)
|+-+.+++-+.+. ...+.++..|..|+..+.+ |-.+.-...+|.++.-+..++ ......++..|..
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 3334444445443 3455677788888754332 222222344566666666655 1344566678888
Q ss_pred cccCC--cchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHH----HhhchHHHHHHHHhhCCHHHHHHHHHHHHh
Q 008781 401 LADNE--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK----IHGRVLNHLLYLMRVAEKGVQRRVALALAH 474 (554)
Q Consensus 401 l~~~~--~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 474 (554)
++... ++..++... ..++.| ....+-+...++.+.+. ....++..|+.++..+.+.+|..+..+|..
T Consensus 142 ~a~~~~~~~La~il~~-----ya~~~f--r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ 214 (262)
T PF14225_consen 142 VAEAQGLPNLARILSS-----YAKGRF--RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKV 214 (262)
T ss_pred HHHhCCCccHHHHHHH-----HHhcCC--CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 87542 233332221 111112 33344455555555553 356678889999999999999999999999
Q ss_pred hcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 475 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 475 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
+....+.+.. ...+.+.++.+++..+. ..+|..+|.++...
T Consensus 215 ll~~~d~~~~-~~~dlispllrlL~t~~---~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 215 LLPHVDMRSP-HGADLISPLLRLLQTDL---WMEALEVLDEIVTR 255 (262)
T ss_pred HhccccCCCC-cchHHHHHHHHHhCCcc---HHHHHHHHHHHHhh
Confidence 9666553322 55567889999997654 34566666655544
No 311
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.93 E-value=95 Score=25.74 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=55.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhcCC-CHH---HHHHHHHHHHHHhc
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE-DSA---IHYEAVGVIGNLVH 278 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~-~~~---v~~~a~~~L~~L~~ 278 (554)
++..|.+-|++.++.++..|+..|-.+..+. +.....+....++..|..++.+. ... |+..++..+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4568888899999999999999999988754 45666777778889999988743 333 89999888877754
No 312
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=60.64 E-value=1.2e+02 Score=26.60 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=57.0
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHH
Q 008781 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (554)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (554)
...+|.+++-+...+...+..|...+..+.......+-.-+-..++..+-..|.+.++++...++.+|..|+..++....
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 45678888888777666677777777777654122222223345677777888899999999999999999766555444
Q ss_pred HH
Q 008781 286 EV 287 (554)
Q Consensus 286 ~~ 287 (554)
.+
T Consensus 117 aL 118 (183)
T PF10274_consen 117 AL 118 (183)
T ss_pred HH
Confidence 43
No 313
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=60.37 E-value=20 Score=28.02 Aligned_cols=39 Identities=33% Similarity=0.342 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCC
Q 008781 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (554)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~ 118 (554)
....+..|..++..|+.=..+++.|+++.|+.+|.+.+.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 456778888899999998999999999999999999887
No 314
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=59.94 E-value=1e+02 Score=30.28 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=74.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC-------ChHHHHHHHHHHHHHhcCCcc
Q 008781 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFAATDSD 324 (554)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~ 324 (554)
..+...+.+++...+..|+..| .. ++.. ..++|.++.++.+. +.........++..|.. ++.
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL---~t-D~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~ 249 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSL---RT-DPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPN 249 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh---cc-CCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCC
Confidence 3444444445555555555443 22 2222 12566666666432 34445555666666653 333
Q ss_pred cHHHHHHcCCHHHHHHHhC----------CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCC--hhHHH
Q 008781 325 CKVHIVQRGAVRPLIEMLQ----------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQH 392 (554)
Q Consensus 325 ~~~~~~~~~~~~~L~~~l~----------~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~ 392 (554)
......-+.++|.++..+- ...+.+|+.|+..|..++..-.....-.....+..+.+.+.++. .....
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 3333333447888887763 23468999999999999964433322233334445665555433 23355
Q ss_pred HHHHHHHHc
Q 008781 393 NAAFALYGL 401 (554)
Q Consensus 393 ~a~~~L~~l 401 (554)
.|+..|..+
T Consensus 330 GAi~GL~~l 338 (343)
T cd08050 330 GAIVGLSAL 338 (343)
T ss_pred HHHHHHHHh
Confidence 566666655
No 315
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=59.87 E-value=25 Score=31.59 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 008781 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (554)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (554)
.+...+...|..++.++..|+..+.+. ++.++..+.......-..+..++..+..++......+.+. .+..++.++.
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~ 152 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLR 152 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHH
Confidence 577889999999999888888888765 5544444333222222456677777877777766665544 3888888887
Q ss_pred cCChHHHHHHHHHHHHHh
Q 008781 302 SCCSESQREAALLLGQFA 319 (554)
Q Consensus 302 ~~~~~~~~~a~~~L~nl~ 319 (554)
..... ..-...|..++
T Consensus 153 ~~gr~--~~~L~~L~~lc 168 (207)
T PF01365_consen 153 KHGRQ--PRYLDFLSSLC 168 (207)
T ss_dssp ------------------
T ss_pred HcCCC--hHHHHHHhhhc
Confidence 63321 12334455554
No 316
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.63 E-value=70 Score=34.10 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHhcCChhhHHHHHHcCChHHHHHHHhccccC
Q 008781 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (554)
Q Consensus 140 L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~ 172 (554)
|..=|..|.+|..+..+|++..+++.|.+...+
T Consensus 358 la~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~ 390 (865)
T KOG2152|consen 358 LADKCVMPDFRMHLRAHGMVDAVFKALMDSHED 390 (865)
T ss_pred hhhhccChHHHHHHHHcccHHHHHHHHhccccc
Confidence 333447789999999999999999999887654
No 317
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=59.47 E-value=41 Score=27.64 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=55.6
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (554)
+..|.+-|.+.++ .++..|+.+|-.+. .++.+...+...+++..|.+++....... .++.
T Consensus 39 ~r~l~krl~~~n~------------~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~------~Vk~ 100 (133)
T smart00288 39 VRLLKKRLNNKNP------------HVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP------LVKK 100 (133)
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH------HHHH
Confidence 4556667777666 88999999999888 46778888999999999999998865531 3888
Q ss_pred HHHHHHHHHhh
Q 008781 184 RAADAITNLAH 194 (554)
Q Consensus 184 ~a~~~L~~L~~ 194 (554)
.++..+..-..
T Consensus 101 kil~li~~W~~ 111 (133)
T smart00288 101 RILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 318
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.17 E-value=2.6e+02 Score=29.93 Aligned_cols=115 Identities=12% Similarity=0.019 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHH
Q 008781 376 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 455 (554)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ 455 (554)
+..+..+|.+.+..+|.....+++|+..+.....+++++- -+ .-...+..|.+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~-~~--------------------------~~~~Lv~ll~E 353 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHY-KQ--------------------------KLNDLVGLLVE 353 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhH-HH--------------------------HHHHHHHHHHH
Confidence 4567888999999999999999999876533222233210 00 01113566677
Q ss_pred HHhhCCHHHHHHHHHHHHhhcCCch----hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCc
Q 008781 456 LMRVAEKGVQRRVALALAHLCSPDD----QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 456 ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
-+.+..|.+|..|+..+..++.-+. .+.. .+...+..+.+...-||+.|...+..|....+.
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-----v~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-----VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 7788999999999998888865433 2332 355666778888889999999999988876543
No 319
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=57.90 E-value=1.6e+02 Score=32.02 Aligned_cols=136 Identities=19% Similarity=0.250 Sum_probs=89.7
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhccChhhH
Q 008781 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (554)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (554)
...|..|+.++.+.+..+...+-..+......+.+. -++..|++. +...+. .++.+|..+ ..+..
T Consensus 3 ~~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s~----~~~~il~~~--~~P~~- 68 (668)
T PF04388_consen 3 QASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNSQ----RALEILVGV--QEPHD- 68 (668)
T ss_pred cccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCcH----HHHHHHHhc--CCccH-
Confidence 345678888999988888877777776665422111 124444543 223222 234444433 22211
Q ss_pred HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhc
Q 008781 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~ 362 (554)
..++..|-..+.. +..+..++..|+.+....+...-.+.+..+++.|+..|. +.+..+...|+.+|..|.=
T Consensus 69 -----K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 69 -----KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred -----HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 1234455555554 567889999999999888888888999999999999988 5677888888888888764
No 320
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.58 E-value=72 Score=26.49 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhCC------CChhHHHHHHHHHHHHHhhc
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGS------TNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~ 520 (554)
.+..|..-+.+.++.++..|+.+|-.+..+ ......+...+.+..|+.++.. .++.|+......+..-+..-
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467777888899999999999999888543 4456667777888889988853 56799999888888777654
No 321
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.34 E-value=2.6e+02 Score=29.69 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcC---ChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHH
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEG---GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 256 (554)
+++..|+.+|.-+..+...+...+.... .+..++..+. .++..+..++++|.|+-. ++.+++.+... ...++.
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSR--LESILD 634 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHH--HHHHhh
Confidence 7778888888888775554433333222 3344444444 567788889999999997 57777766644 333333
Q ss_pred hhc----CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc---C--ChHHHHHHHHHHHHHhcCCcccHH
Q 008781 257 MLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---C--CSESQREAALLLGQFAATDSDCKV 327 (554)
Q Consensus 257 ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~---~--~~~~~~~a~~~L~nl~~~~~~~~~ 327 (554)
.+. .++..++........|++..-. +.-.+.+..+.+...+.. . +.+.....+.+|++|+..+ ....
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~---~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~-~~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLI---QDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD-ASVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHH---hcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc-HHHH
Confidence 222 3344555544444445432100 111113344444444332 2 2234556667889987544 3334
Q ss_pred HHHHcCCHHHHHHHhCC
Q 008781 328 HIVQRGAVRPLIEMLQS 344 (554)
Q Consensus 328 ~~~~~~~~~~L~~~l~~ 344 (554)
.+...--+..+..-+++
T Consensus 711 ~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 45554455666666653
No 322
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=57.06 E-value=5e+02 Score=32.83 Aligned_cols=161 Identities=20% Similarity=0.149 Sum_probs=89.8
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCc
Q 008781 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (554)
Q Consensus 244 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 323 (554)
.+...+.+..+...+.++.-.++..+...+++++..++...-.-+..-.+..+-.+-.+....+....+.-+..+....+
T Consensus 560 ~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence 34455566667777778888899999999999988776432222222222222222222223222333322222221111
Q ss_pred ccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcC-CChhHHHHHHHHHHHcc
Q 008781 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLA 402 (554)
Q Consensus 324 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~ 402 (554)
...... -...+..++..+.++++.+...+..++..|+.....-........++.+.+.+.. .+..-+..+.+++.++.
T Consensus 640 ~~i~~~-v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 640 VLISPY-VGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHHhh-cCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 111111 2334566777777888888889999999998754422211112445555555543 34556778888999887
Q ss_pred cCC
Q 008781 403 DNE 405 (554)
Q Consensus 403 ~~~ 405 (554)
...
T Consensus 719 s~~ 721 (2341)
T KOG0891|consen 719 SST 721 (2341)
T ss_pred ccc
Confidence 654
No 323
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=56.85 E-value=1.2e+02 Score=28.59 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhC-CHHHH
Q 008781 387 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQ 465 (554)
Q Consensus 387 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~-~~~v~ 465 (554)
+..+.+.++..+.|+..-++....-...+. .....+ .-+......+++..|+.+..+. .....
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~----------~~~~~d------~li~~l~~~~v~~lLL~l~s~~~~~~f~ 196 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDE----------DSSLHD------QLIWALFESGVLDLLLTLASSPQESDFN 196 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccch----------hHHHHH------HHHHHHHHcCHHHHHHHHHhCccccchh
Confidence 355777888888888665443221111010 000000 1122335677888888888775 34455
Q ss_pred HHHHHHHHhhcCCch
Q 008781 466 RRVALALAHLCSPDD 480 (554)
Q Consensus 466 ~~a~~~L~~l~~~~~ 480 (554)
...+.+++.+..+.+
T Consensus 197 ~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 197 LLLLEIIYLLFKGQD 211 (266)
T ss_pred hHHHHHHHHHHcCCC
Confidence 577777777755543
No 324
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=56.11 E-value=2.3e+02 Score=28.62 Aligned_cols=221 Identities=11% Similarity=0.026 Sum_probs=114.9
Q ss_pred cccchhHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHH
Q 008781 174 CSRAVNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (554)
Q Consensus 174 ~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 252 (554)
..++.|.=...+-.++..+....+.. .....+...+..|+.++.++|+.-|......|.++-......+..+. ..+..
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~ 177 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINN 177 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHH
Confidence 34455565566666666666522210 11233456678899999999999999999999988764444444444 34566
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCCh-HHHHHHHHHHHHHhcCCcccHHHHH
Q 008781 253 TLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIV 330 (554)
Q Consensus 253 ~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~ 330 (554)
.+.+.+. .........++..++.+..+-..--+.-...=....++.+...... .....-..++..+...++.....
T Consensus 178 ~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-- 255 (409)
T PF01603_consen 178 IFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-- 255 (409)
T ss_dssp HHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH--
T ss_pred HHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH--
Confidence 6676666 3455567778888888876422100110101122334444444432 23445555665555444443322
Q ss_pred HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc-hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 008781 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 400 (554)
Q Consensus 331 ~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 400 (554)
++..++..--..++.-...-+.-+..+...-+.. -.-+.......+..++.+.+..|.+.|+....|
T Consensus 256 ---~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 256 ---VIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp ---HHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred ---HHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 2333333333455554445555555555432211 111222345567777888888888877765433
No 325
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=56.08 E-value=2e+02 Score=27.81 Aligned_cols=143 Identities=23% Similarity=0.294 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHhccCCccchHHHHhc--------C---CHHHHHHhhc------CCCHHHHHHHHHHHHHHhccChh
Q 008781 220 DTKVQRAAAGALRTLAFKNDENKNQIVEC--------N---ALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN 282 (554)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~---~~~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~ 282 (554)
.-.+|.+|+.|+.....++++.+..+++. + ....|+..|- +.|+--.-.|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45788999999999988888887766543 0 1112444443 23444445677788888888888
Q ss_pred hHHHHHHc--C----------CHHHHHHHhcc-----CChHHHHHHHHHHHHHhcCCcccHHHHHHc-CCHHHHHHHhC-
Q 008781 283 IKKEVLAA--G----------ALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQ- 343 (554)
Q Consensus 283 ~~~~~~~~--~----------~l~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-~~~~~L~~~l~- 343 (554)
.+..+..- | .++.+..+|.. .++.++..-+..|.-...+++.....++.. ..++.|+....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 77666532 1 45666666644 234444444555655556777777777765 47888888764
Q ss_pred --CCCHHHHHHHHHHHHHHhc
Q 008781 344 --SPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 344 --~~~~~v~~~a~~~L~~L~~ 362 (554)
+.+.-++.-++..|+-+..
T Consensus 211 ~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 3456677666666666554
No 326
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.75 E-value=2.4e+02 Score=32.87 Aligned_cols=97 Identities=9% Similarity=0.000 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc----CC---CHHHHHHHHHHHHHHhccChhhHHHHHHc
Q 008781 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (554)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (554)
.+..+++...+.++.++.... +...+ .| -+.+.++++ .. ...+...+..+|.-++.+--..-..-.-.
T Consensus 853 ~~~~evr~~sl~~l~silet~--ge~ll--~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETV--GEHLL--HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhcc--chhhc--cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 345567777778888887521 11111 11 333333332 11 34566666666666654211100111112
Q ss_pred CCHHHHHHHhcc-CChHHHHHHHHHHHHHh
Q 008781 291 GALQPVIGLLSS-CCSESQREAALLLGQFA 319 (554)
Q Consensus 291 ~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~ 319 (554)
++++.+...-+. .+..+.-.|...+++++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 345555554432 34455556666666554
No 327
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=53.35 E-value=1.2e+02 Score=24.52 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.6
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHHc
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~ 156 (554)
+++.|.+=|+..+. .|+..++++|-.+| .+++++..+...
T Consensus 39 i~d~L~kRL~~~~~------------hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 39 LLEYLLKRLKRSSP------------HVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHhcCCCC------------cchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 36777778877666 89999999999999 666777777665
No 328
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.83 E-value=3.3e+02 Score=29.42 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=38.7
Q ss_pred hhhhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCC
Q 008781 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (554)
Q Consensus 52 ~~~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~ 118 (554)
.+.+...+.-++..|+..+ ...+.+.-.+-.|..=|..|.++..+...|++..+++.|...+.
T Consensus 327 Yqe~~dd~~yiLStlq~~~----~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~ 389 (865)
T KOG2152|consen 327 YQEFTDDLEYILSTLQSAL----LPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHE 389 (865)
T ss_pred hhhhhhhHHHHHhhhhhcc----ccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhcccc
Confidence 3444444555555554441 12233333333444445579999999999999999998876655
No 329
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=51.74 E-value=2.3e+02 Score=27.21 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=88.3
Q ss_pred HHHHHhCCChHHHHHhhcCCCCCc---c---cc--CC---CcchHHHHHHHHHHHHHhcCChhhHHHH------------
Q 008781 97 VNWIVEGGAVPALVKHLQAPPTSE---A---DR--NL---KPFEHEVEKGSAFALGLLAVKPEHQQLI------------ 153 (554)
Q Consensus 97 ~~~~~~~g~v~~Lv~lL~~~~~~~---~---~~--~~---~~~~~~v~~~a~~~L~~l~~~~~~~~~i------------ 153 (554)
...+.+.|.||.|-++.+.-.... + +. ++ -..+..++.+-++.+.++|+...+...+
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 356788999999888775422111 0 00 00 0113368899999999999633322211
Q ss_pred ----------HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCch--hHHHHHhcCChHHHHHhhcCC--
Q 008781 154 ----------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVELLEFT-- 219 (554)
Q Consensus 154 ----------~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~i~~L~~ll~~~-- 219 (554)
-+.|.+..+++.+.....+. ..+.+.+.++-.+..+.+. -+..+...|.+..++..+-++
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s------~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~ 155 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDS------SYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGC 155 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCcc
Confidence 12356677777776554433 6677888888888876555 345667788889998877554
Q ss_pred -CHHHHHHHHHHHHHhccCCcc
Q 008781 220 -DTKVQRAAAGALRTLAFKNDE 240 (554)
Q Consensus 220 -~~~v~~~a~~~L~~l~~~~~~ 240 (554)
+..+.+.....|+.+...+..
T Consensus 156 ~~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 156 MSQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred chHHHHHHHHHHHHHHHCCCHH
Confidence 345778888888888875543
No 330
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=51.49 E-value=1.4e+02 Score=34.37 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l 342 (554)
..||..++++|..+..+-... . ....+..+.+++....++++...+..+....+-..+... ..-..+++..+..+
T Consensus 143 apVre~caq~L~~~l~~~~~s--~--~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L 217 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDES--L--IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGL 217 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhH--h--hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 478999999999886542221 1 123567788888887787776665555443321111111 11123567777778
Q ss_pred CCCCHHHHHHHHHHHHHHhcC
Q 008781 343 QSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 343 ~~~~~~v~~~a~~~L~~L~~~ 363 (554)
.+.+..++..|+.++.-.+..
T Consensus 218 ~ds~ddv~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 218 EDSDDDVRSVAAQFLVPAPSI 238 (1549)
T ss_pred hhcchHHHHHHHHHhhhhhHH
Confidence 888889999998888877643
No 331
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=51.46 E-value=2.1e+02 Score=26.83 Aligned_cols=42 Identities=17% Similarity=0.013 Sum_probs=28.8
Q ss_pred hhHHHHHhCCChH-HHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCC
Q 008781 95 EVVNWIVEGGAVP-ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK 146 (554)
Q Consensus 95 ~~~~~~~~~g~v~-~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 146 (554)
..+..+.+.++++ -|+.+|.+... ++.+...++++|.+|+.-
T Consensus 31 ~v~r~lg~~~iv~~DLiPiL~~~~~----------~~~l~~~~l~LLV~LT~P 73 (266)
T PF04821_consen 31 DVRRQLGEWNIVQKDLIPILISYKD----------DDKLFLACLRLLVNLTWP 73 (266)
T ss_pred HHHHHHHHhchhhhhHHHHHHhccC----------chHHHHHHHHHHHHhCCC
Confidence 3455556666665 67777766554 338899999999999843
No 332
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=51.12 E-value=3.2e+02 Score=31.64 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (554)
.+++.++++|..+..+-.... ....+..+.+++..+..+++...+..+.....-..+....+. ..+++..+.-|.
T Consensus 144 pVre~caq~L~~~l~~~~~s~----~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDESL----IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLE 218 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhHh----hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Confidence 788899999988876332211 123456777777777666665555444443321111111111 134666777788
Q ss_pred CCCHHHHHHHHHHHHHHhccChhh-HHHHHHcCCHHHHHHHhccCCh--HHHHHHHHHHHHHhcCCc--ccHHH-HHHcC
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDS--DCKVH-IVQRG 333 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~--~~~~~a~~~L~nl~~~~~--~~~~~-~~~~~ 333 (554)
+.+..++..|+..+.-++...... .+.+ ..++..+...+..-+. .........+..++...+ +.-.. -...|
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~ 296 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVG 296 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhc
Confidence 899999999999887775432111 1111 1233333333322111 111111223333332221 11111 11258
Q ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC
Q 008781 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 334 ~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~ 364 (554)
++|.+...+.+.-..++.+++..+..+....
T Consensus 297 Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 297 LVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999998887889999999999987543
No 333
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.00 E-value=4.9e+02 Score=30.61 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=52.8
Q ss_pred cCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 008781 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 290 ~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
.+++|.|...|.+.+..++..|...++.+.+. +.....=-.......++.-+.+.+..+|..++....++..+
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~-~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSD-KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 36889999999999999999999999999743 33222111233555566666678889999888888876544
No 334
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=48.94 E-value=91 Score=25.70 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHH
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L 315 (554)
.++...++.++......-+ ...+.+.+.++.+.+++.+ +..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 5666666666666654222 2444455566666666643 33355555543
No 335
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=47.86 E-value=2.8e+02 Score=27.11 Aligned_cols=211 Identities=15% Similarity=0.056 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHH
Q 008781 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPP 211 (554)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~ 211 (554)
|...+.+|..+... . ....++..+..++....++ ......+.++..=+... .+ .....+..
T Consensus 4 r~~~~~~L~~l~~~-~-----~s~~i~~~l~~~~~KE~nE-------~aL~~~l~al~~~~~~~~~~-----~~~~~~~~ 65 (339)
T PF12074_consen 4 RVLHASMLSSLPSS-S-----LSSKIVQGLSPLLSKESNE-------AALSALLSALFKHLFFLSSE-----LPKKVVDA 65 (339)
T ss_pred HHHHHHHHHhCCCc-c-----hHHHHHHHHHHHHHhhcCH-------HHHHHHHHHHHHHHHHhCcC-----CCHHHHHH
Confidence 44556666666631 1 3344567777888776553 44444444444433211 11 11234456
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCCccc--hHHHHhcCCHHHHHHhhc----CCCHHHH---HHHHHHHHHHhc-cCh
Q 008781 212 LVELLEFTDTKVQRAAAGALRTLAFKNDEN--KNQIVECNALPTLILMLR----SEDSAIH---YEAVGVIGNLVH-SSP 281 (554)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~~~~L~~ll~----~~~~~v~---~~a~~~L~~L~~-~~~ 281 (554)
+.+-+++..+.+|..-+.+++.+.. ...+ ...++ ..+++.|+..++ ++-+... ..++.++..+.. ..+
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~-~~~~~~~~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~ 143 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALW-ESPNSDSLKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLD 143 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHh-hccCchHHHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccch
Confidence 6666677667788877777777764 1111 11222 235666666664 2222111 111111111111 001
Q ss_pred hhHH------HHHHcCCHHHH--HHHhcc-CChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCC--CHHHH
Q 008781 282 NIKK------EVLAAGALQPV--IGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLR 350 (554)
Q Consensus 282 ~~~~------~~~~~~~l~~L--~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~ 350 (554)
.... .+....--..+ -++.+. ...+.....+.++..+..........-........++.++-++ .+.+|
T Consensus 144 ~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR 223 (339)
T PF12074_consen 144 KIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVR 223 (339)
T ss_pred hhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHH
Confidence 0000 00000000000 011222 2344445555566555533222111111223456677777766 88999
Q ss_pred HHHHHHHHHHhcC
Q 008781 351 EMSAFALGRLAQD 363 (554)
Q Consensus 351 ~~a~~~L~~L~~~ 363 (554)
..|..++..+...
T Consensus 224 ~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 224 RAALSALKKLYAS 236 (339)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 336
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.02 E-value=2.9e+02 Score=30.45 Aligned_cols=108 Identities=20% Similarity=0.136 Sum_probs=67.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH-H
Q 008781 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-A 289 (554)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~ 289 (554)
.+...+.+++.......+.++.++..-..-.... ...-++.-..-....-..++....++|..++.-++.....+. +
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Confidence 3444445566666666667776665321110000 111111222222222345677788889999887776666665 4
Q ss_pred cCCHHHHHHHhccCChHHHHHHHHHHHHHhc
Q 008781 290 AGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (554)
Q Consensus 290 ~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 320 (554)
.+....++.++-+++.++...|...|.....
T Consensus 523 ~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 523 PDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred cchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999863
No 337
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=45.91 E-value=48 Score=32.49 Aligned_cols=127 Identities=11% Similarity=0.006 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhhhhccchHh-hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHH
Q 008781 56 LSEVSAQVNVLNTTFSWLEA-DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (554)
Q Consensus 56 ~~~v~~~v~~L~~~~~~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (554)
...+|.++.++......+.. +.......++.+..|..|+...-..--.-.+|.++.++-+..... ..+....+.+|.
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~--~~~~~~h~~LRd 286 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS--RPPDDNHWALRD 286 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC--CCCCchHHHHHH
Confidence 34566677766665544444 566677778888888887654332222336888887774432210 001223459999
Q ss_pred HHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHH
Q 008781 135 GSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (554)
Q Consensus 135 ~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L 192 (554)
.|+.+|+.+| .+..+.. +..-++..+.+.+.++.... .....|+..|..+
T Consensus 287 ~AA~ll~~i~~~f~~~y~~--l~~ri~~tl~k~l~d~~~~~------~~~YGAi~GL~~l 338 (343)
T cd08050 287 YAARLLAQICRKFSTSYNT--LQPRITRTLLKALLDPKKPL------TTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHHcCCCCCc------chhhHHHHHHHHh
Confidence 9999999999 2222111 11222345555555554432 4455666666555
No 338
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.61 E-value=85 Score=25.35 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=45.0
Q ss_pred chHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch--hhHHHHHc-CcHHHHHHhhCCCC--------hhHHHHHHHHHHHH
Q 008781 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDG-GGLELLLGLLGSTN--------PKQQLDGAVALFKL 516 (554)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~-~~l~~L~~ll~~~~--------~~v~~~a~~~L~~L 516 (554)
.++..|..-|++.++.|+..++++|-++|.... .+..+.+. ..|..+.++-...+ ..||..|-.++.-|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 357788888888999999999999999976533 33333332 34445555544222 24676666666554
Q ss_pred H
Q 008781 517 A 517 (554)
Q Consensus 517 ~ 517 (554)
-
T Consensus 118 f 118 (122)
T cd03572 118 F 118 (122)
T ss_pred h
Confidence 3
No 339
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.80 E-value=2.4e+02 Score=28.00 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=76.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
+.-|+..+++.+..++..|+.-|..+....+.....- -..+++.+..+..+.+..+|......+-++....-.......
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 4567777889999999999999888876444433322 234577778888899999999999998886543222111111
Q ss_pred HcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCC
Q 008781 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (554)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 322 (554)
-.-+++.+...+.+..++++..++..|.-+....
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 1223445555566677889999998888887443
No 340
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.54 E-value=72 Score=26.46 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=53.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHHcCCHHHHHHHhccCC-hH---HHHHHHHHHHHHh
Q 008781 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC-SE---SQREAALLLGQFA 319 (554)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~lL~~~~-~~---~~~~a~~~L~nl~ 319 (554)
++..|.+-|.+.++.++..|+..|-.+..+. +.....+....++..|..++.+.. .. ++..+...+...+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4677888888999999999999999998764 455566667778899999887543 33 7888877776665
No 341
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=43.22 E-value=3.6e+02 Score=28.02 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=72.0
Q ss_pred hHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC----------CCHHHHHHHH
Q 008781 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----------TDTKVQRAAA 228 (554)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a~ 228 (554)
+|.++.++...-.......+..+....+..++.|.. |+...-.-.-...+|.++.++-+ ....+|..|+
T Consensus 241 lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA 319 (576)
T KOG2549|consen 241 LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAA 319 (576)
T ss_pred HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHH
Confidence 566777766543322112233777778888888877 76655554555677888777632 2346888888
Q ss_pred HHHHHhccCCccchHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 008781 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNL 276 (554)
Q Consensus 229 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~L 276 (554)
..+..++.+....... ....++..+.+.+.+. .....+-++..|..+
T Consensus 320 ~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 320 RLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 8888888643333333 3345667777776654 455666676666666
No 342
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=41.76 E-value=2.9e+02 Score=28.22 Aligned_cols=109 Identities=16% Similarity=0.061 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhccCCccchHHHHhcCCHH-HHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 008781 222 KVQRAAAGALRTLAFKNDENKNQIVECNALP-TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (554)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~-~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 300 (554)
..|..++.+|+.++..-+...-. .+.. .|+..|.+....-|..+.-++...+...........-..+.+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 45777888888887642222111 1123 688889888888888888888888754332211110123456677777
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCC
Q 008781 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (554)
Q Consensus 301 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 334 (554)
.++.+..-.+....+..+-.........+.+.|.
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7555555555566666665433444445556666
No 343
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=41.70 E-value=23 Score=19.63 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHh
Q 008781 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK 167 (554)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~ 167 (554)
||..++++|+++.+. + +++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd~-~---------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP-R---------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH-H---------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH-H---------HHHHHHHHhc
Confidence 577899999998752 1 3566666664
No 344
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=41.41 E-value=95 Score=21.25 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHhhcCCchhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHHHHHhhc
Q 008781 472 LAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 472 L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~ 520 (554)
|.-||....+|..+.+.|+-+.|-.+-. .++++++..+-....-|..+.
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE 51 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDE 51 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 5567888889999888888887776655 567888877666665555554
No 345
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=41.25 E-value=65 Score=26.96 Aligned_cols=43 Identities=35% Similarity=0.364 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHh
Q 008781 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (554)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 319 (554)
...|+..|+.+..+. -+..|+.+|.+.+.++...|+.+|.+..
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 455555555553331 3678888888888888888888888764
No 346
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=40.97 E-value=2.6e+02 Score=24.86 Aligned_cols=133 Identities=20% Similarity=0.068 Sum_probs=73.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHH-HHHHHHHHHHHhhchHHHHHH
Q 008781 377 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV-AKTLKRLEEKIHGRVLNHLLY 455 (554)
Q Consensus 377 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~L~~ 455 (554)
..+..++.++..+.+..|+.++.......+. ..+ ..++..+....... +.+++ ...+..+.. ......+.+..
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-~~~---~~~~~~~~~~~~W~-~~D~~~~~~~~~~~~-~~~~~~~~~~~ 127 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTE-EDL---ELLEKWLPDIDNWA-TCDSLCSKLLGPLLK-KHPEALELLEK 127 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-HHH---HHHHHCCCCCCCHH-HHHHHTHHHHHHHHH-HHGGHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-HHH---HHHHHHhccCCcch-hhhHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 3455677777888888877777654322111 000 01111222111111 11111 111122111 11557788889
Q ss_pred HHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 456 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 456 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
.++++++-+++.++.++.......... ..+..+...+.+++.-+|....++|..++...+
T Consensus 128 W~~s~~~w~rR~~~v~~~~~~~~~~~~------~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 128 WAKSDNEWVRRAAIVMLLRYIRKEDFD------ELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHCSSHHHHHHHHHCTTTHGGGCHHH------HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHhCCcHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 999999999999887776664442211 123455566678888999999999999998754
No 347
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.65 E-value=3.1e+02 Score=29.83 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcc
Q 008781 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHS 279 (554)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~ 279 (554)
.+..|..++..|+.+....+...-.+.+..+++.|++.|. +.+..+...|+.+|..|.-.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 4567888999999999877888888889999999999887 56778888888888887543
No 348
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=40.17 E-value=77 Score=25.27 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=31.6
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 155 (554)
+++.|++-|.+++. +|...|..+|...|.++++-+.++.
T Consensus 9 ~i~lLv~QL~D~~~------------~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSP------------EVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCH------------HHHHHHHHHHHHHHhchhhHHHHHH
Confidence 58889999988877 9999999999999955566555554
No 349
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=40.17 E-value=3.3e+02 Score=30.06 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhcCchhHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh
Q 008781 180 SVIRRAADAITNLAHENSSIKT-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (554)
.+......+|..++..++..-. .+.+.+....++.++-+++.++...|...|..... ... -.+.+-.++
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d--~~~--------R~e~i~~ll 565 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD--VDG--------RLEAIQALL 565 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc--CCc--------HHHHHHHHH
Confidence 6777788888888876665444 44457888999999999999999999999999874 322 233444444
Q ss_pred cCCCHHHHHHHHHHHHHHh
Q 008781 259 RSEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~ 277 (554)
...-........+.|..+.
T Consensus 566 ~~~~~~tL~ai~~~l~~~~ 584 (727)
T PF12726_consen 566 QSNFSPTLSAINWSLRQLT 584 (727)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 4433444444455555553
No 350
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=39.86 E-value=57 Score=18.34 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhc
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKR 168 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~ 168 (554)
.+|..++++|+++.+ ++. ++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~~-~~a---------~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-EEA---------VPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-HhH---------HHHHHHHhcC
Confidence 688999999999853 222 4556666543
No 351
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=39.56 E-value=35 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.3
Q ss_pred cCCHHHHHHHhCCCCHHHHHHHHHHH
Q 008781 332 RGAVRPLIEMLQSPDVQLREMSAFAL 357 (554)
Q Consensus 332 ~~~~~~L~~~l~~~~~~v~~~a~~~L 357 (554)
..+...+...+.++++.+|++++.+|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34567777788899999999988653
No 352
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.10 E-value=5.6e+02 Score=28.15 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcC---ChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh--
Q 008781 131 EVEKGSAFALGLLAV---KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-- 205 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~---~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-- 205 (554)
-+|+..+++++.... ..+.+... -..+++++++.++. -++-.++.++.-...+-.-....|..
T Consensus 502 iiRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~D~-------vV~Ltt~~tlkl~vDD~nF~~dsFlp~l 569 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQNDL-------VVRLTTARTLKLVVDDWNFSEDSFLPYL 569 (978)
T ss_pred HHHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccccc-------eeehHHHHHHHHhhhhccCChhhhhhhH
Confidence 688889999988873 22333332 35577888777542 56666777776665533222222221
Q ss_pred cCChHHHHHhhcC-CCHHHHHHHHHHHHHhccCCccchHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008781 206 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 206 ~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~ 278 (554)
......+..+++. +.-+.+...+..|..+.....+...-.... ..+|.|.+-- .+++-.|...+.+|.|+..
T Consensus 570 enlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~ 644 (978)
T KOG1993|consen 570 ENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVN 644 (978)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHH
Confidence 2233344445543 334566666777776664322211111100 0122222211 3566788888889999864
No 353
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=38.77 E-value=3.4e+02 Score=28.61 Aligned_cols=105 Identities=14% Similarity=0.062 Sum_probs=68.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCcc
Q 008781 338 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 417 (554)
Q Consensus 338 L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i 417 (554)
++.-..+-++.+|..+...|+-....- ...+..-.++...--.|.+.+..++.....++..|+...++...+.+
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lv--P~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~---- 353 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLV--PDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRR---- 353 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcc--hHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHH----
Confidence 333444567778888877777665422 12333334555566667788899999999999999877665442221
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 008781 418 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (554)
Q Consensus 418 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 475 (554)
+-.++..++++++..+..-||..+.+.++.+
T Consensus 354 ---------------------------f~eRFk~rILE~~r~D~d~VRi~sik~l~~l 384 (740)
T COG5537 354 ---------------------------FVERFKDRILEFLRTDSDCVRICSIKSLCYL 384 (740)
T ss_pred ---------------------------HHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 1223456777777665545888888888877
No 354
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=38.75 E-value=4.3e+02 Score=26.70 Aligned_cols=227 Identities=10% Similarity=0.058 Sum_probs=99.9
Q ss_pred hCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhH
Q 008781 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (554)
Q Consensus 102 ~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~ 180 (554)
....+..|+.+++++++ .=|.....+|.++- .-...|..+. ..+...+.+++...... .
T Consensus 131 ~~~fi~~Ll~l~~S~D~------------rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~-------~ 190 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDP------------RERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERH-------N 190 (409)
T ss_dssp -HHHHHHHHHTTTSSTH------------HHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS---------S
T ss_pred CHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccc-------c
Confidence 33456666777766655 55555666666655 3333333332 22334444454433222 2
Q ss_pred HHHHHHHHHHHHhhcCc-hh---HHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHhccCCccchHHHHhcCCHHHHH
Q 008781 181 VIRRAADAITNLAHENS-SI---KTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~-~~---~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 255 (554)
-+..++.+++.+..+.. +. ...+.. ..++-+.+.+.. .....-..++......++.....+ +..++
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~fl~----~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~ll 261 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQFLR----KVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLL 261 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHHHHH----HTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHH
Confidence 23345555555554321 11 111111 223333333221 223334444444444333322211 12222
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHH--cC
Q 008781 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RG 333 (554)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~ 333 (554)
+.=-..+..=...-+.-+..+...-+...-.-+...+...+..++.+.+..|.+.|+..+.|= .....+.+ ..
T Consensus 262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~~li~~~~~~ 336 (409)
T PF01603_consen 262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFLSLISQNSRV 336 (409)
T ss_dssp HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHHHHHHCTHHH
T ss_pred HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHHHHHHhChHH
Confidence 222123333333344444444433222112222234667777788888888888877654331 11111111 12
Q ss_pred CHHHHHHHhCC-----CCHHHHHHHHHHHHHHhc
Q 008781 334 AVRPLIEMLQS-----PDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 334 ~~~~L~~~l~~-----~~~~v~~~a~~~L~~L~~ 362 (554)
++|.+...+.. -+..++..+..++.-+..
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56666666542 256788888888777765
No 355
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=6.4e+02 Score=30.09 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=117.4
Q ss_pred hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhH-HHHHHcCChHHHHHHHhccccC
Q 008781 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDS 172 (554)
Q Consensus 94 ~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~i~~~g~l~~L~~lL~~~~~~ 172 (554)
.+.+..+++.|.+..+..-+.+.+. .++..+.+++...-+.-++. +.....-.+..+..+.++...+
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~------------~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e 1496 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDP------------SMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRE 1496 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcC
Confidence 3444467788888888777777665 89998988887766555553 4444444566677777665554
Q ss_pred ccccchhHHHHHHHH---HHHHHhhcCch--h---------HHHHHhcCChHHHHHhhcCCCH---HHHHHHHHHHHHhc
Q 008781 173 NCSRAVNSVIRRAAD---AITNLAHENSS--I---------KTRVRMEGGIPPLVELLEFTDT---KVQRAAAGALRTLA 235 (554)
Q Consensus 173 ~~~~~~~~~~~~a~~---~L~~L~~~~~~--~---------~~~~~~~~~i~~L~~ll~~~~~---~v~~~a~~~L~~l~ 235 (554)
++.+ +...+.- -..+++. .|. . ...+.+-.++|.+-+++.+..+ ..|......++...
T Consensus 1497 ~~~R----l~si~alF~A~~~~ill-~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~gl 1571 (1758)
T KOG1791|consen 1497 SDPR----LISICALFIAFFSDILL-VPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGL 1571 (1758)
T ss_pred CCcc----hhhHHHHHHHHHHHHHc-CCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHh
Confidence 4332 2222111 1222222 221 0 1123445667777777765433 35666666666655
Q ss_pred cCCccchHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCC
Q 008781 236 FKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 304 (554)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 304 (554)
. .....+.....+....++....++ +...+...+.+|++-+.-.......+-..|....+.+++.+..
T Consensus 1572 k-s~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1572 K-SCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSF 1641 (1758)
T ss_pred c-CchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccc
Confidence 4 455556666777888888888765 5566778888888876553444444555788889999988764
No 356
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=37.71 E-value=2.9e+02 Score=24.56 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHH-HHHHHHHhhcCchhHHHHHhcC
Q 008781 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA-ADAITNLAHENSSIKTRVRMEG 207 (554)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a-~~~L~~L~~~~~~~~~~~~~~~ 207 (554)
+.+..++.++.... .+++ .++.+-.++...+. |++.... ..++..+.... ..
T Consensus 66 E~~~la~~il~~~~~~~~~~---------~~~~~~~~~~~~~~-------W~~~D~~~~~~~~~~~~~~---------~~ 120 (213)
T PF08713_consen 66 EERYLALLILDKRRKKLTEE---------DLELLEKWLPDIDN-------WATCDSLCSKLLGPLLKKH---------PE 120 (213)
T ss_dssp HHHHHHHHHHHHCGGG--HH---------HHHHHHHCCCCCCC-------HHHHHHHTHHHHHHHHHHH---------GG
T ss_pred HHHHHHHHHhHHHhhhhhHH---------HHHHHHHHhccCCc-------chhhhHHHHHHHHHHHHhh---------HH
Confidence 77777887776544 1111 23445555553333 3555555 33445544311 33
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
..+.+...+.++++-.++.++..+...... .. + ..++..+...+.+++..|+....|+|..++..+++.....
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~---~--~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK--ED---F--DELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CH---H--HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cC---H--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 456778888999999998887776655542 11 1 1234455566778899999999999999988877765555
Q ss_pred HHc
Q 008781 288 LAA 290 (554)
Q Consensus 288 ~~~ 290 (554)
+..
T Consensus 194 l~~ 196 (213)
T PF08713_consen 194 LQK 196 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 357
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=37.30 E-value=34 Score=34.54 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=48.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (554)
..+-.++...+++++..+..++.+++.+ .+++...+ +..+-..+++++..+.+++-+.+..++..+-
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~-~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFC-LENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheec-ccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3444455678899999999999999985 44444443 4455667778888888877777777777664
No 358
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=36.90 E-value=2.2e+02 Score=22.75 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=43.5
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 008781 208 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (554)
Q Consensus 208 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 279 (554)
.+|.+.+.+. +..++.+..+...+..++...+-. ..+++. ++..++.-...... ...++.+|..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~-l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNA-LMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHH-HHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 4678888888 778899999999999999743322 222221 23333333332222 47788888888754
No 359
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.54 E-value=5.7e+02 Score=27.49 Aligned_cols=257 Identities=16% Similarity=0.163 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 155 (554)
|+..+.+|-..|+.++.+|++..... -++..++. | --+.-|..+|.++......-.....
T Consensus 19 D~~~R~~AE~~L~e~s~speclskCq---------lll~~gs~--------p---Ys~mlAst~L~Klvs~~t~lpl~qr 78 (1082)
T KOG1410|consen 19 DPTARHRAEKALAELSESPECLSKCQ---------LLLERGSY--------P---YSQMLASTCLMKLVSRKTPLPLEQR 78 (1082)
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHH---------HHHHcCCC--------c---hHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 66688899999999999887654321 12333222 1 2234566677766622111111112
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcC--chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN--SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (554)
.++-..+++++....+.-.. -+....+..+..+..-. +..+....-.+.+..+.+.++.++.+-..-+..+|..
T Consensus 79 ldir~Yilnylat~~Pk~~~----fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAP----FVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHhcCCCCccc----HHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHH
Confidence 23345677777664432110 44444555555555411 1223333445677788888888777766677777777
Q ss_pred hccCCccchHHHHh-cCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC-C----hH
Q 008781 234 LAFKNDENKNQIVE-CNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-C----SE 306 (554)
Q Consensus 234 l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-~----~~ 306 (554)
+... -|...-.. ..--..+..-++++. -++-.-++..|.....-+-..+ ...|.+..++++--.+ + ..
T Consensus 155 Lvqe--mN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~---~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 155 LVQE--MNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDR---AQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHH--hhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccH---hHhhHHHHHHHHHhhhcccccccc
Confidence 7642 01000000 000011111122111 2344444545444431111110 1112222222221110 0 00
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 307 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
..-+...-++++ .-....+..+.+...++.+.++..+-.+...+.++.+|..++.
T Consensus 230 s~DEssed~ctV-QIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlAS 284 (1082)
T KOG1410|consen 230 STDESSEDLCTV-QIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLAS 284 (1082)
T ss_pred ccccccccccce-ecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHH
Confidence 000111111111 1123456667778889999999988788888888899888874
No 360
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.93 E-value=3e+02 Score=28.55 Aligned_cols=131 Identities=12% Similarity=0.005 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHhhhhccch--HhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHH
Q 008781 55 LLSEVSAQVNVLNTTFSWL--EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (554)
Q Consensus 55 ~~~~v~~~v~~L~~~~~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v 132 (554)
+-..+|.++.++....+.+ ..|-.......+..+.|.+|+...-.---...+|.++.++-+..... ...-...+.+
T Consensus 237 L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~--~p~~dnhwaL 314 (576)
T KOG2549|consen 237 LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCL--RPELDNHWAL 314 (576)
T ss_pred HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccC--CccccchHHH
Confidence 3455777787777766555 45667778888888888888654433222445777777664432210 0011123489
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhh
Q 008781 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (554)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 194 (554)
|.-|+..+..+| +-...-.. ...-++..+.+.+.+.... +.....++..|..|-.
T Consensus 315 RDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~------~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 315 RDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP------LSTHYGAIAGLSELGH 370 (576)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHhhh
Confidence 999999999999 22222111 3444566666666665332 2555666666666543
No 361
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.11 E-value=2.6e+02 Score=28.66 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=64.0
Q ss_pred CHHHHHHhhcC----CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHH----HHHHHHHHHhcC
Q 008781 250 ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR----EAALLLGQFAAT 321 (554)
Q Consensus 250 ~~~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~----~a~~~L~nl~~~ 321 (554)
+...|..+|.. -+++++...+.+|.-|-.. ..+.-..++..++.++.-++...+. +....|.|+-..
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk-----~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~ 91 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNK-----NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKK 91 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc-----CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhh
Confidence 45566677763 3689999999999887322 2233345677888888876665554 344455655322
Q ss_pred CcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 322 ~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
.... -....+-..++.+|..+++.--.+|+.+++.|-.
T Consensus 92 ~kn~---klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 92 HKND---KLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYK 129 (616)
T ss_pred cccc---hHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 2221 1122234567788888887766666666666643
No 362
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.92 E-value=1.9e+02 Score=22.87 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=46.7
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
++..|..-|.+.+. .++..|+.+|-.+. .++.+...+....++..++++...... ....+..++
T Consensus 38 ~~~~l~kRl~~~~~------------~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~--~~~~~~~Vr 103 (115)
T cd00197 38 AVDAIKKRINNKNP------------HVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLL--GDDVSTNVR 103 (115)
T ss_pred HHHHHHHHhcCCcH------------HHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccc--cCCCChHHH
Confidence 35556666666544 88899999999999 667788888877666666554111111 111122778
Q ss_pred HHHHHHHHHH
Q 008781 183 RRAADAITNL 192 (554)
Q Consensus 183 ~~a~~~L~~L 192 (554)
..+...+...
T Consensus 104 ~k~~~l~~~w 113 (115)
T cd00197 104 EKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHH
Confidence 8777776543
No 363
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=33.73 E-value=1.8e+02 Score=28.42 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCC--ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHH
Q 008781 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (554)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i 153 (554)
++..|+..+..+..++.....+...+ .+.-|+++++.+.. . ..+++..|+.+|.-++ ......+.+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~-v--------~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK-V--------PMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC-C--------CHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45555555555555677777777777 99999999987763 2 3389999999999999 555444433
No 364
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=33.51 E-value=1.7e+02 Score=21.86 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=43.1
Q ss_pred HhhchHHHHHHHHh-hCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhC----CCChhHHHHHHHHHH
Q 008781 445 IHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG----STNPKQQLDGAVALF 514 (554)
Q Consensus 445 ~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~v~~~a~~~L~ 514 (554)
++..++.++..++. ..+.++|...+.++.++...... -+.. |-+.+...+. ++++.+...|-.++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~---~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE---NIKS-GWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH---HHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 46667888888864 47889999999999999654331 1333 4444444443 456666666665543
No 365
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=33.49 E-value=70 Score=24.32 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHH
Q 008781 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (554)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L 192 (554)
.+.+|..|+.+|+.++..-.....-.+.-++..+.+.+.++.... .....|+..|..+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~------~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPL------GTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHH
Confidence 559999999999999922111111122234566777776655432 6777788888777
No 366
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=32.85 E-value=3.9e+02 Score=24.41 Aligned_cols=140 Identities=15% Similarity=0.226 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccC-CCcchH-----HHHHHHHHHHHHhcCChhhH
Q 008781 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRN-LKPFEH-----EVEKGSAFALGLLAVKPEHQ 150 (554)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~-~~~~~~-----~v~~~a~~~L~~l~~~~~~~ 150 (554)
.....-++..+..+..+++....+...+.++-+.+.|..-++..+..+ .+-|++ .+-..=...||.++.++...
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 456667777888888888888888899999999998876533211111 112222 33344456788999888888
Q ss_pred HHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH-HHHHhhcCCCHHHHHHHHH
Q 008781 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP-PLVELLEFTDTKVQRAAAG 229 (554)
Q Consensus 151 ~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~-~L~~ll~~~~~~v~~~a~~ 229 (554)
..+-+.++...+.++....+.+ ++... +|.++=... .|... .|-+.|.+++..+|..|..
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~-------~l~kl---il~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~ 218 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRD-------DLLKL---ILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATK 218 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchH-------HHHHH---HHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8899999999999999876331 33333 444442211 12222 3455778889999999999
Q ss_pred HHHHhc
Q 008781 230 ALRTLA 235 (554)
Q Consensus 230 ~L~~l~ 235 (554)
.|+.+.
T Consensus 219 ~L~~ll 224 (226)
T PF14666_consen 219 HLRVLL 224 (226)
T ss_pred HHHHHh
Confidence 988775
No 367
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.63 E-value=2.6e+02 Score=28.65 Aligned_cols=141 Identities=17% Similarity=0.151 Sum_probs=78.1
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH--
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR-- 183 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~-- 183 (554)
-.-|..+|..... .++++++...+.+|-.|- ++..+.-...+..+..++...+. ..+.
T Consensus 18 P~el~dLL~~~~~--------~lp~~Lr~~i~~~LiLLr----Nk~~i~~~~LL~lff~l~~~~dk--------~lRkll 77 (616)
T KOG2229|consen 18 PSELKDLLRTNHT--------VLPPELREKIVKALILLR----NKNLIVAEDLLELFFPLLRCGDK--------NLRKLL 77 (616)
T ss_pred hHHHHHHHHhccc--------cCCHHHHHHHHHHHHHHh----ccCcCCHHHHHHHHHHHHhcCch--------hHHHHH
Confidence 4456677766544 235699999998888775 22334444557778888877665 3333
Q ss_pred --HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC
Q 008781 184 --RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (554)
Q Consensus 184 --~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 261 (554)
.....|.|+-..+.. .-.....-..++.+|..+++.--..|+..+..|-..+--+ ++..+..+....-+.
T Consensus 78 ythiv~~Ikn~n~~~kn---~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~-----d~~tV~i~~~acf~~ 149 (616)
T KOG2229|consen 78 YTHIVTTIKNINKKHKN---DKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN-----DSKTVNIITTACFSK 149 (616)
T ss_pred HHHHHHHHHHHHhhccc---chHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc-----cchhHHHHHHHHhcc
Confidence 334444443221111 0011112245667888777765556666665554322111 344555555555566
Q ss_pred CHHHHHHHHHHHH
Q 008781 262 DSAIHYEAVGVIG 274 (554)
Q Consensus 262 ~~~v~~~a~~~L~ 274 (554)
++.+...++..+.
T Consensus 150 ~~ki~vs~l~FfL 162 (616)
T KOG2229|consen 150 VPKILVSGLRFFL 162 (616)
T ss_pred CcHHHHhhhHHhc
Confidence 6777766666653
No 368
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=32.49 E-value=5.6e+02 Score=26.17 Aligned_cols=151 Identities=16% Similarity=0.095 Sum_probs=64.7
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCc-cchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChh
Q 008781 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (554)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (554)
.+...+|.+...|..+-.+..-++...|+.+....+ ....... ..+++.|+.-.--+...-.-..++.|.......+.
T Consensus 114 ~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 345667888888887766777777788888776444 1111111 12333333211111111123444455554433222
Q ss_pred hHHHHHHcCCH----HHHHHHhccCChHHHHHHHHHHHHHhcCCcccH-HHHHHcCCHHHHHHHhC-CCCHHHHHHHHHH
Q 008781 283 IKKEVLAAGAL----QPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFA 356 (554)
Q Consensus 283 ~~~~~~~~~~l----~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~ 356 (554)
. +...+-+ ..+-.++.+...+ .++...|..+...-+... ...+ ..++..++.-|+ +..+......+..
T Consensus 193 ~---i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F 266 (435)
T PF03378_consen 193 F---IVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVF 266 (435)
T ss_dssp G-------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred h---hcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHH
Confidence 1 2323333 3334455554322 345555555543222211 1011 224444555555 4555555555555
Q ss_pred HHHHh
Q 008781 357 LGRLA 361 (554)
Q Consensus 357 L~~L~ 361 (554)
++.++
T Consensus 267 ~~~~~ 271 (435)
T PF03378_consen 267 LSLFA 271 (435)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 369
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.31 E-value=1.8e+02 Score=32.35 Aligned_cols=96 Identities=16% Similarity=0.055 Sum_probs=66.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhccC--CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhH
Q 008781 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (554)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (554)
.++..-..+|.+.+-.+|..++.+|....-- ...+.-.-.-....+.++..+...++-+...|+.++.++.....+..
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 4555666778888889999999888754321 22222222224568899999999999999999999999987655543
Q ss_pred HHHHHcCCHHHHHHHhcc
Q 008781 285 KEVLAAGALQPVIGLLSS 302 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~ 302 (554)
..=+-..++|.+-.++.+
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334577777766543
No 370
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=32.29 E-value=2.4e+02 Score=24.13 Aligned_cols=76 Identities=16% Similarity=0.016 Sum_probs=50.9
Q ss_pred HHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHH-Hc-CcHHHHHH-hhCCCC--hhHHHHHHHHHHHHHh
Q 008781 444 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI-DG-GGLELLLG-LLGSTN--PKQQLDGAVALFKLAN 518 (554)
Q Consensus 444 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~-~~l~~L~~-ll~~~~--~~v~~~a~~~L~~L~~ 518 (554)
.++..+.+.|+..+.++++.+-..+++++..+...-. ..+. +. -.+..+.. ++++++ .+.|..+..++..+++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~--~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR--SHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 3556678888888888889999999999999964322 1111 11 12333443 566544 4678889999999998
Q ss_pred hcC
Q 008781 519 KAT 521 (554)
Q Consensus 519 ~~~ 521 (554)
...
T Consensus 147 ~p~ 149 (168)
T PF12783_consen 147 DPQ 149 (168)
T ss_pred Chh
Confidence 653
No 371
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.20 E-value=2.7e+02 Score=28.82 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=29.0
Q ss_pred hHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhh
Q 008781 149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (554)
Q Consensus 149 ~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 194 (554)
..+.+.+.+.++.|+.+|...... +++..|+.+|..+..
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~-------~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSS-------DVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCH-------HHHHHHHHHHHHHHH
Confidence 344556789999999999844432 888888888877765
No 372
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=31.96 E-value=1.5e+02 Score=24.32 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=44.4
Q ss_pred chHHHHHHHHhhCC----HHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHH
Q 008781 448 RVLNHLLYLMRVAE----KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 513 (554)
Q Consensus 448 ~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 513 (554)
.++..+...+.... ..+...++.++......-+... +.+.+.++.+.+++. ++..+..|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~-i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL-IINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH-HHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH-hccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 34666666665533 7889999999999988554433 456678999999984 445587787765
No 373
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=31.76 E-value=77 Score=26.54 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 376 LVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
+.+|+.+|.+++..+...|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 55555555555555555555555553
No 374
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=30.31 E-value=3.2e+02 Score=22.71 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=65.7
Q ss_pred ccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHH
Q 008781 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALP 252 (554)
Q Consensus 175 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~ 252 (554)
...+|++.-..+..+.. . ....+ .++..|.+-+.+ .++.++..|+..|-.+..+. ......+...+++.
T Consensus 15 ~~~dw~~ileicD~In~--~-~~~~k------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~ 85 (141)
T cd03565 15 QSEDWGLNMEICDIINE--T-EDGPK------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIK 85 (141)
T ss_pred CCcCHHHHHHHHHHHhC--C-CCcHH------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhh
Confidence 34566777777777643 1 12222 345677777764 68889999998888887643 35566677788998
Q ss_pred H-HHHhhcC---CCHHHHHHHHHHHHHHhc
Q 008781 253 T-LILMLRS---EDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 253 ~-L~~ll~~---~~~~v~~~a~~~L~~L~~ 278 (554)
. |++++.. .+..|+..++..+...+.
T Consensus 86 e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 86 DVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 7 8888863 345889999988888754
No 375
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.03 E-value=1e+02 Score=29.43 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=43.8
Q ss_pred hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCc---------------hhhHHHHHcCcHHHHHHhhC
Q 008781 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD---------------DQRTIFIDGGGLELLLGLLG 499 (554)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~~~~~~~l~~L~~ll~ 499 (554)
+...+..++.-+.+.+...+..|+++|..++.+. .+...+.+.|+++.|..++.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4556788889999999999999999999996653 14456778899999998875
No 376
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=29.96 E-value=6.7e+02 Score=26.55 Aligned_cols=126 Identities=11% Similarity=-0.031 Sum_probs=80.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccH--HHHHHc
Q 008781 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIVQR 332 (554)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~--~~~~~~ 332 (554)
++-..+-++.+|..+...|+-.....|+ .+....++...-..|.+.+..++.....++..|++..+... +.+. .
T Consensus 281 vsRy~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~-e 356 (740)
T COG5537 281 VSRYIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV-E 356 (740)
T ss_pred hhhccchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH-H
Confidence 3344456788888888888877655553 34444477777778888889999999999999997765443 2222 2
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChh
Q 008781 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS 389 (554)
Q Consensus 333 ~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 389 (554)
.+-..+++++..+..-+|..+...+..+..-. ..+...+..+..++-+..++
T Consensus 357 RFk~rILE~~r~D~d~VRi~sik~l~~lr~lg-----~L~~SeIlIvsscmlDi~pd 408 (740)
T COG5537 357 RFKDRILEFLRTDSDCVRICSIKSLCYLRILG-----VLSSSEILIVSSCMLDIIPD 408 (740)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHhc-----ccchhHHHHHHHHHhcCCCc
Confidence 35566777776433338888888888775311 12233344555566554444
No 377
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=29.46 E-value=2.8e+02 Score=21.84 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHHc-------CChHHHHHHHhcc---ccCccccchhHHHHHHHHHHHHHhhc-Cc
Q 008781 131 EVEKGSAFALGLLA--VKPEHQQLIVDN-------GALSHLVNLLKRH---MDSNCSRAVNSVIRRAADAITNLAHE-NS 197 (554)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~i~~~-------g~l~~L~~lL~~~---~~~~~~~~~~~~~~~a~~~L~~L~~~-~~ 197 (554)
.+....++.|..+| ++.+.+..+... +.+..++.++..- ... ......++...+..+|..++.+ ..
T Consensus 8 ~~~~~ilr~LQLlCEghn~~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~~-~~~~~~~~~~q~~~tL~E~iQGPC~ 86 (109)
T PF08454_consen 8 EIIQRILRFLQLLCEGHNLDLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGKD-INSDNIELIIQCFDTLTEFIQGPCI 86 (109)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHcCCCH
Confidence 55566777777777 444555544432 2344444444331 000 0011125666666677777766 66
Q ss_pred hhHHHHHhcCChHHHHHhhc
Q 008781 198 SIKTRVRMEGGIPPLVELLE 217 (554)
Q Consensus 198 ~~~~~~~~~~~i~~L~~ll~ 217 (554)
+++..+....++..+..++.
T Consensus 87 eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 87 ENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HhHHHHHHccHHHHHHHHHh
Confidence 66776776666666666653
No 378
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.29 E-value=3.3e+02 Score=28.16 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=47.0
Q ss_pred hhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhccCC-------------ccchHHHHhcCCHHHHHHhhcC-CC
Q 008781 198 SIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKN-------------DENKNQIVECNALPTLILMLRS-ED 262 (554)
Q Consensus 198 ~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-------------~~~~~~~~~~~~~~~L~~ll~~-~~ 262 (554)
....++.+.+.++.|+.+|.. .++.++..|+..|..+..-. ......+.....+..|+..+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 445566778999999999973 46778888888877664311 1112234444555555553332 22
Q ss_pred HHHHHHHHHHHHHHh
Q 008781 263 SAIHYEAVGVIGNLV 277 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~ 277 (554)
......++.++..|.
T Consensus 133 ~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 133 GSSLVNGVSILIELI 147 (475)
T ss_pred cchHHHHHHHHHHHH
Confidence 444555555555554
No 379
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=29.25 E-value=3.3e+02 Score=26.91 Aligned_cols=94 Identities=10% Similarity=0.087 Sum_probs=65.9
Q ss_pred cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHHH
Q 008781 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL 254 (554)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L 254 (554)
...|+++..+|.-+.+ ++.. -..++..+.+-+.+.++.|...|+..+..++.+ ....+..+....+...|
T Consensus 23 ~enW~~IlDvCD~v~~----~~~~-----~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGS----DPDG-----GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred cccHHHHHHHHHhhcC----CCcc-----cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 3445666666655544 2221 134678899999999999999999999888763 23455666677788888
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHhc
Q 008781 255 ILMLR-SEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 255 ~~ll~-~~~~~v~~~a~~~L~~L~~ 278 (554)
..++. +..+.|+...-..+.+.+.
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHH
Confidence 88888 5677888777777777653
No 380
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.17 E-value=1.3e+02 Score=23.93 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHH
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF 485 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 485 (554)
.++.|+.-+.+++++|...|..+|...|..+.....+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~ 45 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYL 45 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHH
Confidence 4788899999999999999999999998887544333
No 381
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.13 E-value=1.8e+02 Score=32.31 Aligned_cols=94 Identities=18% Similarity=0.048 Sum_probs=66.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHh---ccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCccc
Q 008781 249 NALPTLILMLRSEDSAIHYEAVGVIGNLV---HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (554)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~L~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 325 (554)
.++..-.++|.+++-.+|..++.+|.... ...++ .-...-...++.++..+...++-+...|+.++.+++....++
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n-~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHN-LLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccch-hHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 35566677888999999999999886542 22222 223334568899999999999999999999999998766665
Q ss_pred HHHHHHcCCHHHHHHHhC
Q 008781 326 KVHIVQRGAVRPLIEMLQ 343 (554)
Q Consensus 326 ~~~~~~~~~~~~L~~~l~ 343 (554)
...=.-.+++|.+-.+++
T Consensus 882 v~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 443334456666665554
No 382
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.76 E-value=3.7e+02 Score=22.93 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=48.9
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH-H-cCCHHHHHH-HhccCC--hHHHHHHHHHHHHHh
Q 008781 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-A-AGALQPVIG-LLSSCC--SESQREAALLLGQFA 319 (554)
Q Consensus 245 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~-~~~l~~L~~-lL~~~~--~~~~~~a~~~L~nl~ 319 (554)
+++..+.+.+++.+.+++..+-..+++++..+... .+..+. + .-.+..++. ++.+.. ..-+..++.++..++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 45556788888888777799999999999999743 222222 1 124444554 565444 356667888999998
Q ss_pred cC
Q 008781 320 AT 321 (554)
Q Consensus 320 ~~ 321 (554)
..
T Consensus 146 ~~ 147 (168)
T PF12783_consen 146 KD 147 (168)
T ss_pred hC
Confidence 54
No 383
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.75 E-value=5.1e+02 Score=25.76 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHH
Q 008781 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (554)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 330 (554)
+..|+..+++.+..+|..|+.-|..+..+.+... ...-..+++.+..+..+.+..++......+-++....-.......
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 6778888999999999999999988866544432 112234677777777777788888777777665421111110011
Q ss_pred HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 008781 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 331 ~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
-.=+++.+...+..-.+.++..++..|.-+...
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 111223333344456788888888888887753
No 384
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.71 E-value=8e+02 Score=26.48 Aligned_cols=131 Identities=17% Similarity=0.123 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 008781 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (554)
+.-|.+|-.+|..++.+|++ +..-.-++.+.+.+ --+..|..+|..+.....+.-. ...-++-
T Consensus 20 ~~~R~~AE~~L~e~s~spec---------lskCqlll~~gs~p-------Ys~mlAst~L~Klvs~~t~lpl-~qrldir 82 (1082)
T KOG1410|consen 20 PTARHRAEKALAELSESPEC---------LSKCQLLLERGSYP-------YSQMLASTCLMKLVSRKTPLPL-EQRLDIR 82 (1082)
T ss_pred HHHHHHHHHHHHHHccCHHH---------HHHHHHHHHcCCCc-------hHHHHHHHHHHHHHcCCCCCcH-HHHHHHH
Confidence 37888999999999999887 33333344443332 3444566666666653332110 1112233
Q ss_pred HHHHHhhcCCCH----HHHHHHHHHHHHhccC--CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008781 210 PPLVELLEFTDT----KVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 210 ~~L~~ll~~~~~----~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (554)
..++.++...-| -+....+..++.++.- -+..+....=.+.+..+.+.+..++.+-..-++..|..|.
T Consensus 83 ~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 83 NYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 456666655333 3444444555555431 1222333333356788888888877777777777777775
No 385
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=27.22 E-value=35 Score=34.49 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=45.3
Q ss_pred CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 292 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
....+-.+....++++++++..++++++-..+..+..+-+..+-..++..+..+.+++-+.+..++.-+.
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3344445555678999999999999997543333332333344456667777777777777777766654
No 386
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.18 E-value=6.4e+02 Score=27.60 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=56.3
Q ss_pred chHHHHHHHHhhCCHHHHHHHHHHHHhh-cCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCcCccc
Q 008781 448 RVLNHLLYLMRVAEKGVQRRVALALAHL-CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSV 526 (554)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 526 (554)
+++..|..+.+++=+.++..++.++..| +..++... +.+..|+.-+.+++-.+...|...|.+|....+....+
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 3456666666777789999999999999 44455333 34677888888888889999999999998877765544
Q ss_pred c
Q 008781 527 D 527 (554)
Q Consensus 527 ~ 527 (554)
+
T Consensus 379 v 379 (988)
T KOG2038|consen 379 V 379 (988)
T ss_pred h
Confidence 3
No 387
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.15 E-value=1.7e+02 Score=22.14 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCC--ChhHHHHHHHHHHHc
Q 008781 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGL 401 (554)
Q Consensus 344 ~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l 401 (554)
+++..+|+.|+..|..++..-.....-.....+..+.+.+.++ +......|...|..|
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999986543332233334566677776643 355666777777776
No 388
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=26.06 E-value=7.2e+02 Score=25.42 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCCcc-cHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhh-hcCCHHHHHHHh
Q 008781 306 ESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLKLL 383 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~~-~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~-~~~~l~~L~~ll 383 (554)
..|..|+.+|+.+++.-+. ....+ +-+.|..+|.++...-|..++-++...+.....+..-. -....+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~----~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEI----FQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHH----HHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 4577888899888754322 11111 11268888999888888888889998886543322111 122344566666
Q ss_pred cCC
Q 008781 384 DSK 386 (554)
Q Consensus 384 ~~~ 386 (554)
..+
T Consensus 178 ~~~ 180 (441)
T PF12054_consen 178 ENP 180 (441)
T ss_pred cCC
Confidence 633
No 389
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.93 E-value=2.7e+02 Score=21.96 Aligned_cols=69 Identities=7% Similarity=0.078 Sum_probs=48.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHH
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNL 276 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~a~~~L~~L 276 (554)
++..|.+-+.+.++.++..|+..|-.+..+. +.....+....++..++++.. ..+..||..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4567778888899999999999999998643 345555666655555554311 23678888888777655
No 390
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.82 E-value=5.7e+02 Score=30.77 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=74.9
Q ss_pred cCChHHHHH----hhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh
Q 008781 206 EGGIPPLVE----LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (554)
Q Consensus 206 ~~~i~~L~~----ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 281 (554)
...++.++. ++.+.++.++..+......+-...+ ......++..|+..+.+++..-...|+.+|..|+..++
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 355566665 4567888888777776666654332 23334467788887777766556789999999986544
Q ss_pred hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHH
Q 008781 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (554)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~ 351 (554)
..-... ...+..++..+.+-+..-.+....+|+.++........ -...++.-.+-+.|.+.+...+.
T Consensus 506 ~~l~~f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 506 SELQPF--ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HHHHHT--HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCCcHHHHH
Confidence 322111 22344444444544444455667777777643221111 22233344445556666666554
No 391
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.90 E-value=3e+02 Score=27.17 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=56.3
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCC-c-hhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHHHHHhh
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSP-D-DQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~-~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~ 519 (554)
++..|..-|.+.++.|...|+-.+..+..+ . ..+..+-..+....|..++. +.++.|++.....+.+.+..
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 477888888999999999999988888433 3 35666677788888888888 78889998888888777763
No 392
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=24.22 E-value=5.5e+02 Score=23.42 Aligned_cols=129 Identities=22% Similarity=0.185 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC------------------HHHHHHHHHHHHHHhccChh
Q 008781 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED------------------SAIHYEAVGVIGNLVHSSPN 282 (554)
Q Consensus 221 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~------------------~~v~~~a~~~L~~L~~~~~~ 282 (554)
......+|..+..+.. .++....+.+.++++.+...|..-+ ..+...=...|+.++.+ +.
T Consensus 78 ~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PN 155 (226)
T ss_pred hHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hh
Confidence 4556677888888887 5777777778888888887765321 12223333567777655 44
Q ss_pred hHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHH-HHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~-~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
-.+.+-+.++...+..+....+. ..-...+|.++=-.. .|... .|-+.|.+++..+|..|...|..+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44666677888888888876532 111122444442111 12222 3455678888899999999998775
Q ss_pred c
Q 008781 362 Q 362 (554)
Q Consensus 362 ~ 362 (554)
+
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 4
No 393
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.06 E-value=2.9e+02 Score=28.36 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=64.4
Q ss_pred cccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHH
Q 008781 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALP 252 (554)
Q Consensus 174 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~ 252 (554)
...++|.+-...|..|..--. .+ + ..+..|.+.+.+.++.++..|+..|-.+..+. ..+...+.+.++++
T Consensus 14 l~~pDWa~NleIcD~IN~~~~-~~--~------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~ 84 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTEG-GP--K------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLN 84 (470)
T ss_pred ccCccHHHHHHHHHHHhcCcc-Cc--H------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334556666666655543211 11 1 34567888888888899999999777766532 34455778889999
Q ss_pred HHHHhhcC--CCHHHHHHHHHHHHHH
Q 008781 253 TLILMLRS--EDSAIHYEAVGVIGNL 276 (554)
Q Consensus 253 ~L~~ll~~--~~~~v~~~a~~~L~~L 276 (554)
.++.+.+. .+..||..++..|...
T Consensus 85 emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 85 EMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHhccccCCcchhHHHHHHHHHHHH
Confidence 99988884 4778999999888555
No 394
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.43 E-value=3.8e+02 Score=21.30 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=45.0
Q ss_pred hHHHHHHHHh-hCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHH-HhhCCCChhH-HHHHHHHHHHHHhhc
Q 008781 449 VLNHLLYLMR-VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL-GLLGSTNPKQ-QLDGAVALFKLANKA 520 (554)
Q Consensus 449 ~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~v-~~~a~~~L~~L~~~~ 520 (554)
++|.+...+. +..++.+..+-.+++.|+..-.-...+ +..|+ .++.+..+.. ++.+..+|..+..+-
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~-----l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEV-----LNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHH-----HHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 5788888888 778899999999999998776533322 33333 3333333333 477888888888654
No 395
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.05 E-value=9.7e+02 Score=25.85 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=50.2
Q ss_pred HcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccH------HHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHh
Q 008781 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK------VHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 361 (554)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~------~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~ 361 (554)
..+-+..+++-++++++++++.|+..+......+.... ..++.. -...|.++-.+ .++..+.+.+.+|.-|+
T Consensus 46 lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp-hy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 46 LKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP-HYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred hhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhcc-chhHHHHHHHhccCchhHhHHHHHHHHHh
Confidence 34678899999999999999999999888764332211 122221 12233333332 35678889999999888
Q ss_pred cCCCcc
Q 008781 362 QDMHNQ 367 (554)
Q Consensus 362 ~~~~~~ 367 (554)
-....+
T Consensus 125 mt~se~ 130 (878)
T KOG2005|consen 125 MTMSER 130 (878)
T ss_pred eeeccc
Confidence 544333
No 396
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.98 E-value=1e+03 Score=26.13 Aligned_cols=103 Identities=23% Similarity=0.209 Sum_probs=73.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
..|..|..+..++-+.++..++..++.+..+.|+... .++..++.-|.+++..+-..|...|.+|....|..+.-
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 4667777777778889999999999999886665533 34678889999999999999999999998877776433
Q ss_pred HHHcCCHHHHHHHhccCC--hHHHHHHHHHHHHHh
Q 008781 287 VLAAGALQPVIGLLSSCC--SESQREAALLLGQFA 319 (554)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~nl~ 319 (554)
+ +..+-.++-.++ ......|+..|..+.
T Consensus 379 v-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 V-----IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred h-----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 2 334555543332 344556666666654
No 397
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.66 E-value=1.1e+02 Score=29.20 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=40.6
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCc--------------cchHHHHhcCCHHHHHHhhc
Q 008781 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--------------ENKNQIVECNALPTLILMLR 259 (554)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~~~~~~~~~~L~~ll~ 259 (554)
....+..++.-|.+.+...+..|+++|..++.+.- .|...+.+.|+++.+..+|+
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34567788888888899999999999999987632 22334566677777777765
No 398
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=21.57 E-value=6.6e+02 Score=23.34 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=48.6
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCC--hHHHHHHHHHHHHHhcCCcc
Q 008781 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSD 324 (554)
Q Consensus 247 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~nl~~~~~~ 324 (554)
+..+++.++++++.++..+- ..++......-...-..+..|-++.|..++.+++ .-++..|+.+|..++..++.
T Consensus 71 e~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 45678999999986554111 1112211110111122223466778888887765 44677888899999988887
Q ss_pred cHHHHHHc
Q 008781 325 CKVHIVQR 332 (554)
Q Consensus 325 ~~~~~~~~ 332 (554)
.+..+++.
T Consensus 147 ~Re~vi~~ 154 (249)
T PF06685_consen 147 SREEVIQY 154 (249)
T ss_pred CHHHHHHH
Confidence 77766543
No 399
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.05 E-value=7.6e+02 Score=23.88 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh---------CCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHH
Q 008781 307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---------QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV 377 (554)
Q Consensus 307 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l---------~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~ 377 (554)
++++.+..+.......++... +...++|+++..+ .-.++++.......+..+-..-...-..+-..+..
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q ss_pred HHHHHhcCCC---hhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHH
Q 008781 378 PLLKLLDSKN---GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL 454 (554)
Q Consensus 378 ~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~ 454 (554)
+.+.++..+- |+.+..--..|..+....-..-.-+.......+ +..++
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~-----------------------------idsi~ 171 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLV-----------------------------IDSIV 171 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHH-----------------------------HHHHH
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHH-----------------------------HHHHH
Q ss_pred HHHhhCCHHHHHHHHHHHHhh-----cCCchhhHHHHHcCcHHHHHHhhC----CCChhHHHHHHHHHHHH
Q 008781 455 YLMRVAEKGVQRRVALALAHL-----CSPDDQRTIFIDGGGLELLLGLLG----STNPKQQLDGAVALFKL 516 (554)
Q Consensus 455 ~ll~~~~~~v~~~a~~~L~~l-----~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~v~~~a~~~L~~L 516 (554)
.-+++.+.+|...++.++..+ ..+++....+.+...++.|..++. +.+...=..-+..|.+|
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~L 242 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNL 242 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
No 400
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=20.98 E-value=4.9e+02 Score=21.61 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHHcCChHH-HHHHHhccccCccccchhHHHHHHHHHHHHHhh
Q 008781 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSH-LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (554)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~-L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 194 (554)
.++..|+.+|-.+. .+..+...+...+++.. |++++...... +..++..++..+...+.
T Consensus 54 ~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~-----~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 54 KEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNP-----PTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCC-----cHHHHHHHHHHHHHHHH
Confidence 67778888888887 56778888888899997 89999743211 11788888888887764
No 401
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=20.50 E-value=2.4e+02 Score=21.08 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=41.5
Q ss_pred HHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh----cCCChhHHHHHHHHHH
Q 008781 330 VQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALY 399 (554)
Q Consensus 330 ~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~ 399 (554)
.+..++.++..++. ..+.++|+..+.++.++..... .-..+| -+.+...+ .+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34557788888765 4688999999999999986432 223333 34444433 4455666666655543
No 402
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=20.18 E-value=1.7e+03 Score=27.64 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=53.0
Q ss_pred CcchHHHHHHHHHHHHHhc-CChhhHHHHHHcC---ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHH
Q 008781 126 KPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNG---ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (554)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g---~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 201 (554)
.|.+......-++.+..++ .++..|..+.+.. .++.|..++..+-+. .++..+..+|..++...++.+.
T Consensus 574 ~~ee~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~-------~Lkaai~~~Laal~~~~~~~~~ 646 (1691)
T PF11894_consen 574 SPEEVEMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPP-------SLKAAIFNALAALAAKSPEIAN 646 (1691)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHhcCHHHHH
Confidence 5667778888899999999 7778888887653 589999999886553 7888899999999533444433
Done!