Query 008781
Match_columns 554
No_of_seqs 392 out of 2679
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 11:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 2.1E-39 7E-44 337.3 36.0 403 57-517 76-496 (529)
2 3ul1_B Importin subunit alpha- 100.0 4.2E-39 1.4E-43 333.0 36.3 403 58-518 58-478 (510)
3 4b8j_A Importin subunit alpha- 100.0 1.7E-38 5.9E-43 331.6 37.6 447 15-520 28-498 (528)
4 1wa5_B Importin alpha subunit; 100.0 5.2E-37 1.8E-41 320.3 39.5 406 57-521 87-513 (530)
5 3now_A UNC-45 protein, SD10334 100.0 6.6E-38 2.3E-42 330.0 32.6 442 52-521 241-740 (810)
6 1jdh_A Beta-catenin; beta-cate 100.0 2E-36 6.8E-41 316.5 40.8 432 57-517 59-529 (529)
7 3now_A UNC-45 protein, SD10334 100.0 3.9E-37 1.3E-41 324.1 32.8 437 57-520 290-784 (810)
8 2z6h_A Catenin beta-1, beta-ca 100.0 2.9E-36 9.9E-41 321.5 39.2 435 57-520 56-529 (644)
9 3ul1_B Importin subunit alpha- 100.0 5E-37 1.7E-41 317.4 31.5 369 58-478 101-479 (510)
10 3tpo_A Importin subunit alpha- 100.0 2.2E-36 7.6E-41 314.4 33.8 367 58-477 120-497 (529)
11 2z6g_A B-catenin; FULL-length, 100.0 8.6E-36 2.9E-40 322.5 36.1 422 76-521 206-666 (780)
12 3l6x_A Catenin delta-1; cateni 100.0 5.6E-36 1.9E-40 305.4 31.7 365 101-521 45-479 (584)
13 3l6x_A Catenin delta-1; cateni 100.0 4.4E-36 1.5E-40 306.2 30.7 373 58-491 49-490 (584)
14 1jdh_A Beta-catenin; beta-cate 100.0 2E-35 6.7E-40 308.9 35.1 433 57-519 17-490 (529)
15 2jdq_A Importin alpha-1 subuni 100.0 3.4E-35 1.1E-39 300.7 34.1 401 59-520 22-445 (450)
16 3nmz_A APC variant protein; pr 100.0 3.5E-36 1.2E-40 300.6 26.0 365 82-480 48-453 (458)
17 3nmz_A APC variant protein; pr 100.0 6.1E-36 2.1E-40 298.9 27.4 367 105-520 33-452 (458)
18 1xm9_A Plakophilin 1; armadill 100.0 1.2E-35 4.2E-40 302.2 30.1 360 105-521 3-452 (457)
19 2z6h_A Catenin beta-1, beta-ca 100.0 4.5E-34 1.5E-38 304.6 38.2 433 58-519 15-487 (644)
20 1xm9_A Plakophilin 1; armadill 100.0 2.3E-34 7.8E-39 292.8 29.9 361 59-482 4-454 (457)
21 4b8j_A Importin subunit alpha- 100.0 2.3E-33 7.9E-38 292.8 36.0 366 103-521 73-446 (528)
22 2z6g_A B-catenin; FULL-length, 100.0 3.1E-33 1.1E-37 302.5 37.2 432 58-519 151-623 (780)
23 1wa5_B Importin alpha subunit; 100.0 8.1E-33 2.8E-37 288.6 37.3 367 102-521 85-460 (530)
24 2jdq_A Importin alpha-1 subuni 100.0 1.2E-32 4.2E-37 281.7 31.8 376 58-479 65-445 (450)
25 3nmw_A APC variant protein; AR 100.0 3.1E-32 1E-36 264.6 24.6 283 124-407 41-338 (354)
26 3nmw_A APC variant protein; AR 100.0 3.8E-31 1.3E-35 256.9 23.1 281 78-367 47-339 (354)
27 4hxt_A De novo protein OR329; 100.0 4.7E-27 1.6E-31 220.4 25.0 243 104-366 2-245 (252)
28 4hxt_A De novo protein OR329; 99.9 2.8E-26 9.7E-31 215.0 23.9 243 157-407 2-245 (252)
29 4db8_A Armadillo-repeat protei 99.9 5.1E-26 1.7E-30 213.4 22.8 238 104-362 12-251 (252)
30 3opb_A SWI5-dependent HO expre 99.9 1.2E-25 4.1E-30 232.1 26.3 389 77-520 270-730 (778)
31 4db8_A Armadillo-repeat protei 99.9 1.4E-25 4.6E-30 210.5 23.1 239 157-403 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 2.4E-23 8.2E-28 215.0 29.1 381 82-520 231-685 (778)
33 4db6_A Armadillo repeat protei 99.9 4.3E-23 1.5E-27 187.6 21.3 200 204-403 9-209 (210)
34 4db6_A Armadillo repeat protei 99.9 8E-23 2.7E-27 185.8 22.3 200 155-362 10-209 (210)
35 1xqr_A HSPBP1 protein; armadil 99.9 3.6E-22 1.2E-26 188.6 23.6 245 56-319 27-286 (296)
36 1xqr_A HSPBP1 protein; armadil 99.9 3.1E-21 1.1E-25 182.2 22.1 224 180-404 55-288 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 1.1E-20 3.8E-25 170.4 17.4 196 105-320 9-229 (233)
38 3tt9_A Plakophilin-2; cell adh 99.9 1.6E-20 5.3E-25 169.4 16.9 196 250-478 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 1.9E-16 6.6E-21 167.1 27.5 402 75-517 176-586 (588)
40 3grl_A General vesicular trans 99.7 2.8E-15 9.5E-20 151.1 32.1 327 55-407 19-398 (651)
41 1b3u_A Protein (protein phosph 99.7 3.8E-16 1.3E-20 164.9 26.5 400 78-519 141-549 (588)
42 3grl_A General vesicular trans 99.7 3.4E-15 1.2E-19 150.4 30.6 372 106-521 23-452 (651)
43 4fdd_A Transportin-1; heat rep 99.7 1.8E-16 6.3E-21 174.6 19.6 377 75-520 60-473 (852)
44 4fdd_A Transportin-1; heat rep 99.7 9.6E-16 3.3E-20 168.8 23.6 430 60-520 173-660 (852)
45 1ibr_B P95, importin beta-1 su 99.6 1.6E-14 5.6E-19 147.5 21.8 380 76-521 14-440 (462)
46 2vgl_B AP-2 complex subunit be 99.6 1.3E-13 4.6E-18 144.7 26.4 391 76-521 62-460 (591)
47 1oyz_A Hypothetical protein YI 99.6 2E-13 6.9E-18 129.4 24.5 257 154-514 20-278 (280)
48 1oyz_A Hypothetical protein YI 99.6 4.3E-13 1.5E-17 127.1 23.2 230 204-518 20-250 (280)
49 2bpt_A Importin beta-1 subunit 99.6 3.5E-13 1.2E-17 148.9 25.5 431 59-520 177-670 (861)
50 2vgl_B AP-2 complex subunit be 99.5 1.9E-13 6.6E-18 143.5 20.6 389 75-522 98-497 (591)
51 1qgr_A Protein (importin beta 99.5 2.1E-13 7.1E-18 151.0 21.8 434 58-520 169-681 (876)
52 2bpt_A Importin beta-1 subunit 99.5 2.2E-13 7.5E-18 150.5 20.3 429 59-518 367-857 (861)
53 1w63_A Adapter-related protein 99.5 3.8E-12 1.3E-16 134.1 27.5 384 76-519 120-578 (618)
54 1w63_A Adapter-related protein 99.5 1.3E-11 4.4E-16 130.1 29.6 379 79-520 86-492 (618)
55 1qgr_A Protein (importin beta 99.5 3.7E-12 1.3E-16 140.9 25.9 400 60-520 34-481 (876)
56 1ibr_B P95, importin beta-1 su 99.5 6.6E-13 2.2E-17 135.5 17.2 343 75-478 49-438 (462)
57 3ltm_A Alpha-REP4; protein eng 99.5 3E-12 1E-16 115.7 18.0 191 248-523 18-208 (211)
58 3ltm_A Alpha-REP4; protein eng 99.4 1.2E-11 4E-16 111.8 20.1 189 206-480 18-206 (211)
59 3ltj_A Alpharep-4; protein eng 99.4 2.9E-11 1E-15 108.2 20.8 184 207-476 14-197 (201)
60 3ltj_A Alpharep-4; protein eng 99.4 1.9E-11 6.4E-16 109.5 17.9 185 249-518 14-198 (201)
61 4gmo_A Putative uncharacterize 99.4 2E-10 6.7E-15 122.3 27.2 200 58-276 35-256 (684)
62 1u6g_C TIP120 protein, CAND1; 99.3 1.3E-10 4.5E-15 133.0 26.0 410 76-519 19-507 (1230)
63 1u6g_C TIP120 protein, CAND1; 99.3 9.3E-11 3.2E-15 134.3 21.9 401 59-520 131-600 (1230)
64 2vgl_A Adaptor protein complex 99.2 2.1E-08 7.1E-13 105.2 32.3 367 104-521 74-473 (621)
65 2vgl_A Adaptor protein complex 99.2 4.6E-09 1.6E-13 110.2 27.1 388 76-522 87-513 (621)
66 4gmo_A Putative uncharacterize 99.1 2.2E-09 7.5E-14 114.2 16.2 196 103-319 34-257 (684)
67 1ho8_A Vacuolar ATP synthase s 99.0 3.2E-07 1.1E-11 89.6 25.5 347 156-520 76-478 (480)
68 3b2a_A TON_1937, putative unch 98.9 1.7E-07 5.9E-12 81.2 18.0 188 207-405 33-220 (265)
69 4ady_A RPN2, 26S proteasome re 98.8 3.4E-06 1.2E-10 89.8 26.9 302 129-516 408-717 (963)
70 3b2a_A TON_1937, putative unch 98.7 1.4E-06 4.8E-11 75.6 18.7 188 157-364 33-220 (265)
71 2qk2_A LP04448P; mini spindles 98.7 7.6E-08 2.6E-12 88.5 12.0 186 294-521 18-208 (242)
72 4ady_A RPN2, 26S proteasome re 98.7 4.9E-06 1.7E-10 88.6 26.2 292 131-520 373-678 (963)
73 3tjz_B Coatomer subunit gamma; 98.7 8E-07 2.7E-11 85.0 17.2 278 159-515 70-350 (355)
74 2qk2_A LP04448P; mini spindles 98.6 2.8E-07 9.6E-12 84.7 12.9 186 210-405 18-207 (242)
75 2db0_A 253AA long hypothetical 98.6 6.6E-06 2.3E-10 68.3 19.2 216 102-362 30-246 (253)
76 2db0_A 253AA long hypothetical 98.6 1.4E-05 4.8E-10 66.4 20.6 217 246-519 29-247 (253)
77 2qk1_A Protein STU2; STU2P, XM 98.6 4.1E-07 1.4E-11 83.6 12.0 193 296-520 21-222 (249)
78 3tjz_B Coatomer subunit gamma; 98.6 1.8E-06 6.1E-11 82.6 16.7 248 208-521 69-319 (355)
79 2qk1_A Protein STU2; STU2P, XM 98.4 2.9E-06 9.8E-11 77.9 13.8 191 211-403 20-220 (249)
80 1te4_A Conserved protein MTH18 98.4 6.7E-08 2.3E-12 79.4 0.9 120 332-515 11-130 (131)
81 1te4_A Conserved protein MTH18 98.3 4.9E-08 1.7E-12 80.3 -0.6 122 205-360 10-131 (131)
82 1ho8_A Vacuolar ATP synthase s 98.3 5.8E-05 2E-09 73.8 19.4 233 79-319 184-475 (480)
83 1wa5_C Importin alpha RE-expor 98.3 0.00012 4.1E-09 81.4 24.4 382 75-519 49-526 (960)
84 1wa5_C Importin alpha RE-expor 98.3 0.00028 9.6E-09 78.4 27.2 443 58-520 120-672 (960)
85 3dad_A FH1/FH2 domain-containi 98.0 0.00027 9.1E-09 65.7 17.4 183 160-351 121-325 (339)
86 3dad_A FH1/FH2 domain-containi 98.0 0.00025 8.4E-09 65.9 16.6 157 210-366 121-290 (339)
87 2iw3_A Elongation factor 3A; a 98.0 0.00076 2.6E-08 72.9 21.8 291 213-521 20-327 (986)
88 2iw3_A Elongation factor 3A; a 97.7 0.0096 3.3E-07 64.5 24.7 262 61-361 54-323 (986)
89 2x19_B Importin-13; nuclear tr 97.7 0.037 1.3E-06 61.4 30.3 334 129-520 462-848 (963)
90 2x19_B Importin-13; nuclear tr 97.6 0.019 6.5E-07 63.8 26.4 136 301-477 459-599 (963)
91 2x1g_F Cadmus; transport prote 97.5 0.018 6E-07 64.1 25.2 216 131-362 479-722 (971)
92 4hat_C Exportin-1; heat repeat 97.5 0.047 1.6E-06 60.4 27.2 336 131-521 210-621 (1023)
93 2x1g_F Cadmus; transport prote 97.4 0.0063 2.2E-07 67.7 20.2 289 180-519 259-616 (971)
94 2fv2_A RCD1 required for cell 97.4 0.0018 6E-08 57.4 12.1 179 78-276 71-266 (268)
95 3ibv_A Exportin-T; karyopherin 97.4 0.036 1.2E-06 61.1 25.5 258 76-361 56-360 (980)
96 3m1i_C Exportin-1; heat repeat 97.4 0.036 1.2E-06 62.0 25.8 334 131-519 210-619 (1049)
97 3m1i_C Exportin-1; heat repeat 97.3 0.14 4.7E-06 57.4 29.1 377 78-521 115-572 (1049)
98 1upk_A MO25 protein; transfera 97.2 0.023 7.8E-07 52.8 17.6 205 203-410 74-290 (341)
99 3ibv_A Exportin-T; karyopherin 97.0 0.02 6.8E-07 63.1 18.4 317 59-404 191-567 (980)
100 1lrv_A LRV, leucine-rich repea 97.0 0.00043 1.5E-08 62.5 3.9 179 93-398 63-241 (244)
101 1upk_A MO25 protein; transfera 96.9 0.018 6.2E-07 53.4 14.1 206 285-522 72-287 (341)
102 4ffb_C Protein STU2; tubulin f 96.9 0.021 7E-07 53.1 15.0 189 209-404 12-213 (278)
103 2of3_A ZYG-9; multifunctional 96.9 0.0063 2.2E-07 55.3 10.9 177 210-403 49-236 (266)
104 2fv2_A RCD1 required for cell 96.9 0.098 3.3E-06 46.4 17.8 171 225-401 74-266 (268)
105 4hat_C Exportin-1; heat repeat 96.9 0.046 1.6E-06 60.5 19.6 141 178-323 466-621 (1023)
106 4ffb_C Protein STU2; tubulin f 96.8 0.026 8.8E-07 52.4 14.9 186 296-520 14-214 (278)
107 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0083 2.8E-07 59.3 11.4 241 250-514 175-432 (800)
108 1lrv_A LRV, leucine-rich repea 96.7 0.0018 6.2E-08 58.4 5.8 173 75-357 62-241 (244)
109 2of3_A ZYG-9; multifunctional 96.6 0.047 1.6E-06 49.6 13.8 178 295-520 50-238 (266)
110 3ebb_A Phospholipase A2-activa 96.5 0.23 7.9E-06 46.2 18.7 177 106-302 105-287 (304)
111 3oc3_A Helicase MOT1, MOT1; re 96.5 0.006 2.1E-07 60.3 7.9 235 131-399 189-432 (800)
112 3l9t_A Putative uncharacterize 95.9 0.18 6.3E-06 44.3 13.6 132 131-289 86-218 (240)
113 3a6p_A Exportin-5; exportin-5, 95.9 2.4 8.3E-05 47.9 26.7 259 75-364 59-382 (1204)
114 3ebb_A Phospholipase A2-activa 95.9 0.11 3.7E-06 48.4 13.1 180 64-260 106-287 (304)
115 3gjx_A Exportin-1; transport, 95.7 3.5 0.00012 45.6 28.5 104 386-522 491-599 (1073)
116 3l9t_A Putative uncharacterize 95.5 0.17 6E-06 44.4 11.7 143 251-413 73-218 (240)
117 3c2g_A SYS-1 protein; beta-cat 95.3 0.4 1.4E-05 44.3 13.8 135 181-318 259-401 (619)
118 3gjx_A Exportin-1; transport, 95.2 2.8 9.6E-05 46.3 23.0 326 55-404 200-596 (1073)
119 1lsh_A Lipovitellin (LV-1N, LV 94.2 3 0.0001 46.3 20.5 174 159-366 393-580 (1056)
120 2f31_A Diaphanous protein homo 93.9 1.2 4.2E-05 39.6 13.7 175 84-268 22-218 (233)
121 3eg5_B Protein diaphanous homo 93.9 2.4 8.4E-05 40.8 16.6 173 83-266 87-282 (383)
122 2f31_A Diaphanous protein homo 93.7 3.6 0.00012 36.5 17.3 163 145-308 32-216 (233)
123 3u0r_A Apoptosis inhibitor 5; 93.6 6 0.0002 38.7 24.4 162 76-276 41-204 (507)
124 3eg5_B Protein diaphanous homo 93.5 1.3 4.3E-05 42.9 13.9 160 323-506 100-282 (383)
125 3u0r_A Apoptosis inhibitor 5; 93.5 1.8 6.1E-05 42.3 14.6 118 180-317 43-160 (507)
126 3c2g_A SYS-1 protein; beta-cat 92.6 1.3 4.4E-05 41.1 11.4 134 82-235 262-402 (619)
127 2bnx_A Diaphanous protein homo 91.3 5.2 0.00018 38.6 15.2 164 146-310 37-222 (386)
128 2bnx_A Diaphanous protein homo 90.8 3.6 0.00012 39.7 13.5 139 346-507 71-221 (386)
129 1lsh_A Lipovitellin (LV-1N, LV 89.7 21 0.0007 39.7 20.0 169 292-520 392-578 (1056)
130 3qml_C Protein SLS1, nucleotid 86.6 19 0.00065 32.9 14.3 164 55-235 20-188 (315)
131 3a6p_A Exportin-5; exportin-5, 84.2 27 0.00091 39.5 17.3 223 261-520 25-278 (1204)
132 1x5b_A Signal transducing adap 78.6 16 0.00055 30.1 9.7 94 176-278 30-125 (163)
133 3qml_C Protein SLS1, nucleotid 78.4 40 0.0014 30.8 14.3 136 130-277 42-188 (315)
134 1mhq_A ADP-ribosylation factor 77.0 9.6 0.00033 30.9 7.8 94 176-278 16-116 (148)
135 1juq_A ADP-ribosylation factor 74.4 9.9 0.00034 31.7 7.4 96 175-279 27-129 (171)
136 3gs3_A Symplekin, LD45768P; he 73.1 52 0.0018 29.4 20.9 147 56-235 11-172 (257)
137 3o2t_A Symplekin; heat repeat, 72.9 42 0.0015 32.0 12.2 130 223-361 41-182 (386)
138 3ldz_A STAM-1, signal transduc 71.8 20 0.00067 28.7 8.3 70 208-277 43-113 (140)
139 3zyq_A Hepatocyte growth facto 71.1 27 0.00092 30.6 9.8 97 173-278 20-118 (226)
140 3o2t_A Symplekin; heat repeat, 69.4 80 0.0027 30.1 15.0 87 180-276 40-127 (386)
141 3g2s_A C-terminal fragment of 66.4 50 0.0017 26.6 10.1 71 208-278 49-126 (149)
142 3ldz_A STAM-1, signal transduc 54.9 28 0.00096 27.8 6.2 71 449-519 43-115 (140)
143 1elk_A Target of MYB1; superhe 54.3 86 0.003 25.4 10.0 97 173-278 28-130 (157)
144 1vsy_5 Proteasome activator BL 53.4 69 0.0024 35.1 10.9 218 292-519 134-366 (997)
145 1x5b_A Signal transducing adap 52.7 46 0.0016 27.3 7.3 71 449-519 53-126 (163)
146 3gae_A Protein DOA1; UFD3, CDC 51.9 16 0.00053 32.8 4.7 102 218-323 101-220 (253)
147 1dvp_A HRS, hepatocyte growth 50.7 85 0.0029 27.2 9.2 93 176-277 20-114 (220)
148 1mhq_A ADP-ribosylation factor 50.6 26 0.00087 28.3 5.3 72 292-363 39-117 (148)
149 1vsy_5 Proteasome activator BL 49.5 52 0.0018 36.1 9.1 102 250-361 134-244 (997)
150 3g2s_A C-terminal fragment of 47.5 57 0.0019 26.3 6.9 72 449-520 49-128 (149)
151 3gs3_A Symplekin, LD45768P; he 46.7 1.6E+02 0.0054 26.2 15.6 131 222-361 30-172 (257)
152 3pst_A Protein DOA1; protein d 46.0 28 0.00096 33.6 5.6 105 130-237 276-390 (425)
153 3gae_A Protein DOA1; UFD3, CDC 44.8 19 0.00064 32.3 4.0 139 80-238 71-219 (253)
154 3pst_A Protein DOA1; protein d 44.1 75 0.0026 30.7 8.2 130 183-323 244-392 (425)
155 1juq_A ADP-ribosylation factor 42.5 33 0.0011 28.5 4.9 72 292-363 51-129 (171)
156 3l3f_X Protein DOA1, DOA1/UFD3 41.8 26 0.00089 33.1 4.6 105 130-237 213-327 (362)
157 3s4w_B Protein FACD2, fanconi 39.6 4.6E+02 0.016 29.6 24.1 132 262-404 323-468 (1323)
158 2b6c_A Hypothetical protein EF 39.2 1.9E+02 0.0064 24.9 13.1 127 131-288 70-198 (220)
159 1vdy_A Hypothetical protein (R 38.5 76 0.0026 25.2 6.2 72 447-518 48-130 (140)
160 3zyq_A Hepatocyte growth facto 38.2 51 0.0018 28.8 5.8 71 449-519 46-119 (226)
161 3l3f_X Protein DOA1, DOA1/UFD3 38.0 62 0.0021 30.5 6.5 129 183-322 181-328 (362)
162 3s4w_B Protein FACD2, fanconi 37.1 5E+02 0.017 29.3 21.9 171 305-520 324-509 (1323)
163 3nfq_A Transcription factor IW 36.5 1.5E+02 0.0051 24.4 7.7 79 323-404 66-152 (170)
164 4atg_A TAF6; transcription, TF 33.0 21 0.00071 30.4 2.2 114 56-194 39-162 (196)
165 3vld_A DNA mismatch repair pro 31.5 3.8E+02 0.013 26.3 12.1 154 54-235 70-224 (500)
166 3nfq_A Transcription factor IW 30.7 2.2E+02 0.0077 23.3 8.1 78 281-362 66-151 (170)
167 3jxy_A Alkylpurine DNA glycosy 29.7 2.8E+02 0.0094 24.0 11.4 129 131-290 76-207 (232)
168 1dvp_A HRS, hepatocyte growth 23.0 61 0.0021 28.1 3.5 70 106-194 44-115 (220)
169 2jak_A Serine/threonine-protei 21.9 3.5E+02 0.012 25.7 8.7 104 175-279 139-246 (392)
170 1elk_A Target of MYB1; superhe 21.6 1.4E+02 0.0048 24.1 5.3 71 292-362 54-130 (157)
171 2xpp_A IWS1, ECU08_0440; trans 20.6 3.2E+02 0.011 21.7 10.0 92 182-278 37-136 (145)
172 1n4k_A Inositol 1,4,5-trisphos 20.1 5.5E+02 0.019 24.2 10.6 21 199-219 283-303 (381)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.1e-39 Score=337.26 Aligned_cols=403 Identities=18% Similarity=0.279 Sum_probs=349.0
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (554)
..++.++..+.+. |...+..|+..++.+.+ .......+++.|+||.|+++|...+. +.++.
T Consensus 76 ~~l~~lv~~l~s~------d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-----------~~~q~ 138 (529)
T 3tpo_A 76 WSVEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQF 138 (529)
T ss_dssp CCHHHHHHHHTSS------CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-----------HHHHH
T ss_pred HHHHHHHHHhcCC------CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-----------HHHHH
Confidence 3466677766554 67789999999998755 23446778999999999999976543 28999
Q ss_pred HHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 008781 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (554)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (554)
.|+|+|+|++ .+++.+..+++.|+++.|+.+|.+++. ++++.|+|+|+|++.+++..+..+...|+++.|+
T Consensus 139 ~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll 210 (529)
T 3tpo_A 139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLL 210 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHH
Confidence 9999999999 888899999999999999999998877 9999999999999998999999999999999999
Q ss_pred HhhcCCC-----HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 214 ELLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 214 ~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
.++..++ ..+...++++|.+++.+...........++++.|+.++.+++++++..++++|.+++.++.+....+.
T Consensus 211 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~ 290 (529)
T 3tpo_A 211 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV 290 (529)
T ss_dssp HTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 9998654 35678899999999986555544555567899999999999999999999999999998888888888
Q ss_pred HcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc-c
Q 008781 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-Q 367 (554)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~-~ 367 (554)
..|+++.|+.+|.+.+..++..++.+|+|++..++.....+.+.|+++.|+.++.++++.++..++|+|+|++.+... .
T Consensus 291 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~ 370 (529)
T 3tpo_A 291 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 370 (529)
T ss_dssp TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHH
Confidence 999999999999999999999999999999988888888899999999999999999999999999999999987655 4
Q ss_pred hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC--CcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHH
Q 008781 368 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (554)
Q Consensus 368 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 445 (554)
..+.+.|+++.|+.++.+++..++..|+++|.|++.+ .+....+++.|
T Consensus 371 ~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g------------------------------ 420 (529)
T 3tpo_A 371 QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG------------------------------ 420 (529)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT------------------------------
T ss_pred HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc------------------------------
Confidence 5577889999999999999999999999999999764 33444555555
Q ss_pred hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC-------chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 008781 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-------DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (554)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (554)
+++.|+.+|++.++.++..++.+|.++... +..+..+.+.||++.|..+..+++.++++.|...|...-
T Consensus 421 ---~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 421 ---IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp ---CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 467888999999999999999999998531 224567789999999999999999999999999887654
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.2e-39 Score=332.95 Aligned_cols=403 Identities=18% Similarity=0.286 Sum_probs=349.4
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (554)
.++.+|+.+.+. |...|..|+..++.+.+. ..-.+.+++.|+||.|+++|+..+. ++++..
T Consensus 58 ~i~~~v~~l~s~------d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~-----------~~lq~~ 120 (510)
T 3ul1_B 58 SVEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFE 120 (510)
T ss_dssp CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC-----------HHHHHH
T ss_pred hHHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC-----------HHHHHH
Confidence 477888877765 778999999999987652 2345778899999999999986543 289999
Q ss_pred HHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 008781 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (554)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (554)
|+|+|+||+ .+++.+..+++.|++|.|+.+|++++. ++++.|+|+|+|++.+++..+..+...|+++.|+.
T Consensus 121 Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~ 192 (510)
T 3ul1_B 121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192 (510)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH
Confidence 999999998 889999999999999999999998766 99999999999999989999999999999999999
Q ss_pred hhcCCC-----HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHH
Q 008781 215 LLEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (554)
Q Consensus 215 ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (554)
++.+++ ..+...++++|.+++.+...........++++.|+.++.+++++++..++++|++|+.++.+....+..
T Consensus 193 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 272 (510)
T 3ul1_B 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 272 (510)
T ss_dssp HTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred HHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHh
Confidence 998754 357788999999999865454444455678999999999999999999999999999888888888889
Q ss_pred cCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc-ch
Q 008781 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QA 368 (554)
Q Consensus 290 ~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~-~~ 368 (554)
.|+++.|+.++.+.+..++..++++|+|++..++.....+.+.|+++.|+.++.+++..++..++|+|+|++.+... +.
T Consensus 273 ~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~ 352 (510)
T 3ul1_B 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 352 (510)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999988888888899999999999999999999999999999999986654 45
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC--CcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHh
Q 008781 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (554)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (554)
.+.+.|+++.|+.++.+++..++..|+++|.|++.. .+....+++.|
T Consensus 353 ~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g------------------------------- 401 (510)
T 3ul1_B 353 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG------------------------------- 401 (510)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT-------------------------------
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC-------------------------------
Confidence 577889999999999999999999999999999864 33444455554
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC-------chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-------DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
+++.|+.++++.++.++..++.+|.+++.. +..+..+.+.||++.|..+..+++.++++.|...|.+.-.
T Consensus 402 --~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 402 --IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp --CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred --CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 467888999999999999999999998532 2245678899999999999999999999999999876653
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.7e-38 Score=331.56 Aligned_cols=447 Identities=18% Similarity=0.243 Sum_probs=356.0
Q ss_pred hhhhccchhhhccchhhhhhhhhhhccccCCCC-C---chhhhhhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHh
Q 008781 15 KGQKRKLDEETVIGDEQQQMQQREISSSSAGTS-S---SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAEL 90 (554)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l 90 (554)
|..+++..-+++....+..+..|+......... . ..........++.+++.|.+. +...+..|++.|+++
T Consensus 28 r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~------~~~~~~~A~~~L~~l 101 (528)
T 4b8j_A 28 RRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYSD------DNNLQLEATTQFRKL 101 (528)
T ss_dssp CCCC-----------------CCCC----------------------CHHHHHHHHTSS------CHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHHHcCC------CHHHHHHHHHHHHHH
Confidence 334444455555555555565555432111100 0 011122334577777777543 667999999999999
Q ss_pred cc-Ch-hhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHh
Q 008781 91 AK-NE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLK 167 (554)
Q Consensus 91 ~~-~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~ 167 (554)
+. .+ .....+++.|++|.|+++|.+++. +.++..|+++|++++ .+++++..++..|+++.|+.+|.
T Consensus 102 ~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-----------~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 170 (528)
T 4b8j_A 102 LSIERSPPIEEVIQSGVVPRFVQFLTREDF-----------PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG 170 (528)
T ss_dssp HTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-----------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred hcCCCCchHHHHHHCCCHHHHHHHhCCCCC-----------HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc
Confidence 66 33 677888999999999999988752 299999999999999 67999999999999999999999
Q ss_pred ccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhccCCccchHHHH
Q 008781 168 RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIV 246 (554)
Q Consensus 168 ~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 246 (554)
+.+. +++..|+++|++++.+.+..+..+...|+++.|+.++ .+.++.++..++++|.+++...+.. ....
T Consensus 171 ~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~ 241 (528)
T 4b8j_A 171 SSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQ 241 (528)
T ss_dssp CSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHH
T ss_pred CCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHH
Confidence 8655 9999999999999998888899999999999999999 6678999999999999999854333 3444
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccH
Q 008781 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326 (554)
Q Consensus 247 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 326 (554)
..|+++.|+.++.++++.++..++++|++++...+...+.++..|+++.|+.+|.++++.++..|+++|+|++...+...
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence 57899999999999999999999999999998877777888899999999999999999999999999999998777788
Q ss_pred HHHHHcCCHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCCCc-chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC
Q 008781 327 VHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 327 ~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~~L~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (554)
..+.+.|+++.|+.+|.++ ++.++..|+|+|+|++.+... ...++..|+++.|+.++.++++.++..|+++|.+++..
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 8888999999999999988 999999999999999975443 45677889999999999999999999999999999865
Q ss_pred --CcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch--
Q 008781 405 --EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-- 480 (554)
Q Consensus 405 --~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-- 480 (554)
++....+++.| +++.|+.++.+.++.++..++.+|.+++...+
T Consensus 402 ~~~~~~~~l~~~~---------------------------------~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 448 (528)
T 4b8j_A 402 GSHDQIKYLVSEG---------------------------------CIKPLCDLLICPDIRIVTVCLEGLENILKVGETD 448 (528)
T ss_dssp SCHHHHHHHHHTT---------------------------------CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCC---------------------------------CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444433 47888999999999999999999999975432
Q ss_pred ----------hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 481 ----------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 481 ----------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
....+.+.||++.|..+..+.+++++..|..+|.++....
T Consensus 449 ~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 449 KTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred hhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 4677889999999999999999999999999999987653
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.2e-37 Score=320.27 Aligned_cols=406 Identities=18% Similarity=0.253 Sum_probs=351.4
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccC--hhhHHHHHhCCChHHHHHhhcCC-CCCccccCCCcchHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~~~~~~~~~v~ 133 (554)
..++.++..|.+. +...+..|++.|+++... ......+++.|++|.|+++|.++ +. .++
T Consensus 87 ~~i~~lv~~L~s~------~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------------~v~ 148 (530)
T 1wa5_B 87 QELPQMTQQLNSD------DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------------MLQ 148 (530)
T ss_dssp CCHHHHHHHHSCS------SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH------------HHH
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH------------HHH
Confidence 3456666665433 567899999999999763 45567788999999999999886 44 899
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 008781 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (554)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (554)
..|+++|++++ .+++.+..++..|+++.|+.+|.+.+. +++..|+++|.+++.+.+..+..+...|+++.|
T Consensus 149 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 220 (530)
T 1wa5_B 149 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 220 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHH
Confidence 99999999999 678899999999999999999997655 999999999999999888889888999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCC
Q 008781 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (554)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 292 (554)
+.++.+.++.++..++++|.+++.+...........++++.|+.++.++++.++..++++|++|+...+.....+++.|+
T Consensus 221 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 300 (530)
T 1wa5_B 221 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRI 300 (530)
T ss_dssp HHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC
T ss_pred HHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCc
Confidence 99999999999999999999999755344445566789999999999999999999999999999887777788888999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC-cchhhh
Q 008781 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIA 371 (554)
Q Consensus 293 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~-~~~~l~ 371 (554)
++.|+.++.+.++.++..|+++|++++..++.....+.+.|+++.|+.+|.++++.++..|+++|++++.+.. ....++
T Consensus 301 v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 380 (530)
T 1wa5_B 301 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 380 (530)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999998777777788889999999999999999999999999999997543 344577
Q ss_pred hcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC----cchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhh
Q 008781 372 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE----DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 447 (554)
Q Consensus 372 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 447 (554)
..|+++.|+.++.++++.++..|+++|.+++... +....+.+.
T Consensus 381 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~--------------------------------- 427 (530)
T 1wa5_B 381 DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ--------------------------------- 427 (530)
T ss_dssp HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHT---------------------------------
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHC---------------------------------
Confidence 8899999999999999999999999999998642 333334433
Q ss_pred chHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch------------hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHH
Q 008781 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (554)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 515 (554)
++++.|+.++.+.++.++..++++|.+++...+ ....+.+.||++.|..++.++++++++.|..+|.+
T Consensus 428 ~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 428 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507 (530)
T ss_dssp TCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 357888999999999999999999999965422 45678899999999999999999999999999999
Q ss_pred HHhhcC
Q 008781 516 LANKAT 521 (554)
Q Consensus 516 L~~~~~ 521 (554)
+....+
T Consensus 508 ~~~~~~ 513 (530)
T 1wa5_B 508 YFGEEE 513 (530)
T ss_dssp HSSSCC
T ss_pred HCCccc
Confidence 887643
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=6.6e-38 Score=330.01 Aligned_cols=442 Identities=18% Similarity=0.194 Sum_probs=351.9
Q ss_pred hhhhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHH-hCCChHHHHHhhcCCCCCccccCCCcch
Q 008781 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIV-EGGAVPALVKHLQAPPTSEADRNLKPFE 129 (554)
Q Consensus 52 ~~~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~-~~g~v~~Lv~lL~~~~~~~~~~~~~~~~ 129 (554)
.+.+...+..++...... .+.+-...|++++.++.. .++....++ ..|+++.|+.++.+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~----------- 304 (810)
T 3now_A 241 KARFTDQIDEYIKDKLLA-----PDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE----------- 304 (810)
T ss_dssp HHHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH-----------
T ss_pred HHHHHHHHHHHHHHHhcc-----CChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH-----------
Confidence 344445555555443222 233456799999999988 566666666 88999999999999876
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc-hhHHHHHhc--
Q 008781 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRME-- 206 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~-- 206 (554)
.++.+|++++++++.++++|+.+.+.|+ +.|..++++.+. .++..|+++|.++..... +........
T Consensus 305 -~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~--------~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~ 374 (810)
T 3now_A 305 -LQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND--------GIRVRALVGLCKLGSYGGQDAAIRPFGDGA 374 (810)
T ss_dssp -HHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH--------HHHHHHHHHHHHHHTTTTTTTSCCSSTTTH
T ss_pred -HHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH--------HHHHHHHHHHHHhccccccCccccchhhcc
Confidence 8999999999999988999999999885 999999986554 889999999999975221 111111222
Q ss_pred --CChHHHHHhhcCC--CHHHHHHHHHHHHHhccCCccchHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh
Q 008781 207 --GGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (554)
Q Consensus 207 --~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 281 (554)
..++.++++|.++ +++++..|+++|.+++. .+..+..++ +.|+++.|+.+|++++..++..++++|.||+.+++
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 3367788888887 88999999999999997 566677766 57999999999999999999999999999997542
Q ss_pred -----------------------------hhH---HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHH
Q 008781 282 -----------------------------NIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (554)
Q Consensus 282 -----------------------------~~~---~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 329 (554)
..+ +.+++.|+++.|+.++.++++.+++.|+|+|+|++ .+++++..+
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~V 532 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKV 532 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 122 67889999999999999999999999999999998 567799999
Q ss_pred HHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhh---hhcCCHHHHHHHhcCCC-hhHHHHHHHHHHHcccCC
Q 008781 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI---AHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNE 405 (554)
Q Consensus 330 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l---~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~ 405 (554)
++.|+++.|+.++.++++..++.|+|+|.||+.+......+ ...+++++|+.+|+++. ...+..|+++|.||+..+
T Consensus 533 v~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 533 VQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999765443322 12469999999998653 445678999999999874
Q ss_pred -cchhHHHhhCccccccchhhhhh-hhHHHHHHHHHHH-------HHHHh-hchHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 008781 406 -DNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRL-------EEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (554)
Q Consensus 406 -~~~~~~~~~~~i~~L~~~~~~~~-~~~~~~~~~~~~l-------~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 475 (554)
+.+..+++.|+++.|++-..... ..+.....++.++ ..... .+.++.|+.++.+++..+|..|+++|+++
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanL 692 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAII 692 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 66778999999988876444211 1222222222222 22233 67899999999999999999999999999
Q ss_pred cC-CchhhHHHHH-cCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 476 CS-PDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 476 ~~-~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+. .+.....+++ .|+++.|+.++.+++.++|+.|+++|.|++.+..
T Consensus 693 t~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 693 TSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 87 5666677777 8999999999999999999999999999998543
No 6
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2e-36 Score=316.47 Aligned_cols=432 Identities=22% Similarity=0.226 Sum_probs=368.2
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
..++.+++.|.+. .+..++..|+..|.+++.+++++..+.+.|+++.|+++|++++. .++..+
T Consensus 59 ~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------------~v~~~a 121 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYA 121 (529)
T ss_dssp HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHH
Confidence 3466666666432 35678999999999999998899999999999999999998765 999999
Q ss_pred HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
+++|++++ .++..+..+.+.|+++.|++++++.+. +++..++.+|.+++..+++.+..+...|+++.|+.+
T Consensus 122 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l 193 (529)
T 1jdh_A 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193 (529)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999 667888899999999999999998654 889999999999999889999999999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
+++++ ...+..++.+|.+++. ++.++..+.+.|+++.|+.++.++++.++..++++|.+++...+... ...++++
T Consensus 194 l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~ 269 (529)
T 1jdh_A 194 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLG 269 (529)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHH
Confidence 98754 4677788999999997 67888999999999999999999999999999999999987644321 1246899
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC--CCHHHHHHHHHHHHHHhcCCC----cch
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMH----NQA 368 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~L~~~~~----~~~ 368 (554)
.|+.++.+.+++++..++++|++++..+++.+..+.+.|+++.|+.++.+ .++.++..++++|+||+.+.. .+.
T Consensus 270 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 99999999999999999999999998777888889999999999999975 347999999999999987643 255
Q ss_pred hhhhcCCHHHHHHHhcCCC-hhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhh----hh--------------
Q 008781 369 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV----QA-------------- 429 (554)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~----~~-------------- 429 (554)
.+...|+++.|++++.+++ +.++..++++|.|++.++++...+.+.|+++.|++..... +.
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~ 429 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc
Confidence 7888999999999999876 5999999999999999988888899999988887643221 00
Q ss_pred -----hHHHHHHHHHHH-------HHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHh
Q 008781 430 -----TKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (554)
Q Consensus 430 -----~~~~~~~~~~~l-------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (554)
.......++.++ ..+.+.++++.|+.++.++++.++..++++|++++..++.+..+.+.|+++.|..+
T Consensus 430 ~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l 509 (529)
T 1jdh_A 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509 (529)
T ss_dssp BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence 001112222222 23567889999999999999999999999999999888888889999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHH
Q 008781 498 LGSTNPKQQLDGAVALFKLA 517 (554)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~ 517 (554)
+.+++++++..|.++|.+|+
T Consensus 510 ~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 510 LHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999874
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.9e-37 Score=324.15 Aligned_cols=437 Identities=16% Similarity=0.145 Sum_probs=349.9
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
..++.++.++.+. +...+..|++.+.+++.+++.|+.+.+.|+ +.|+.++++.+. .++..|
T Consensus 290 G~v~~li~Ll~s~------~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~------------~vr~~A 350 (810)
T 3now_A 290 GILQMILAMATTD------DELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND------------GIRVRA 350 (810)
T ss_dssp THHHHHHHHHHSS------CHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH------------HHHHHH
Confidence 3455566555443 667889999999999999999999999885 999999987655 899999
Q ss_pred HHHHHHhcC-Ch-hhHHHHHHcCC----hHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh-cCCh
Q 008781 137 AFALGLLAV-KP-EHQQLIVDNGA----LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGI 209 (554)
Q Consensus 137 ~~~L~~l~~-~~-~~~~~i~~~g~----l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~~i 209 (554)
+.+|.+++. .. +.....+..|. ++.++++|.++..+. ++++.|+++|.+|+. .+..+..+.. .|++
T Consensus 351 l~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~------~v~~~AveaLayLS~-~~~vk~~lv~d~g~I 423 (810)
T 3now_A 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDK------DIRRWAADGLAYLTL-DAECKEKLIEDKASI 423 (810)
T ss_dssp HHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCS------SHHHHHHHHHHHHTT-SHHHHHHHHHCHHHH
T ss_pred HHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHHhC-CcHHHHHHHHccchH
Confidence 999999972 21 22223333444 566777887762111 899999999999998 5666776664 7999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCcc-----------------------------ch---HHHHhcCCHHHHHHh
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDE-----------------------------NK---NQIVECNALPTLILM 257 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----------------------------~~---~~~~~~~~~~~L~~l 257 (554)
|.|+.+++++++.++..++++|.|++.+++. .+ +.+++.|+++.|+.+
T Consensus 424 p~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L 503 (810)
T 3now_A 424 HALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL 503 (810)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999999999999975421 12 567889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHH--HHHcCCH
Q 008781 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH--IVQRGAV 335 (554)
Q Consensus 258 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~--~~~~~~~ 335 (554)
+.++++.++..|+|+|+||+. +++++..+++.|+++.|+.+|.++++..++.|+|+|+|++......... ....+++
T Consensus 504 L~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 504 AKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp HTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred HcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 999999999999999999985 4778999999999999999999999999999999999998543221110 0124589
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHhcCC-CcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHh
Q 008781 336 RPLIEMLQSP-DVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 413 (554)
Q Consensus 336 ~~L~~~l~~~-~~~v~~~a~~~L~~L~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 413 (554)
++|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|..++.++++.++..|+++|+||+.+++.+..+.+
T Consensus 583 ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~ 662 (810)
T 3now_A 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG 662 (810)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHS
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHh
Confidence 9999999865 4455678999999999875 5577889999999999999999999999999999999999888888885
Q ss_pred -hCccccccchhhhh-hhhHHHHHHHHHHH--------HHHHh-hchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC-chh
Q 008781 414 -VGGVQKLQDGEFIV-QATKDCVAKTLKRL--------EEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQ 481 (554)
Q Consensus 414 -~~~i~~L~~~~~~~-~~~~~~~~~~~~~l--------~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 481 (554)
.|.++.|+...... ...+...+.++.++ ..++. .++++.|+.++.+++..++..|+++|+|++.. ++.
T Consensus 663 ~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~ 742 (810)
T 3now_A 663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742 (810)
T ss_dssp SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 57777665533221 12222223333333 33456 78999999999999999999999999999654 557
Q ss_pred hHHHHHcCcHHHHHHhhCCC---ChhHHHHHHHHHHHHHhhc
Q 008781 482 RTIFIDGGGLELLLGLLGST---NPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 482 ~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~ 520 (554)
...+.+.|++++|..++... +.++...|..+|.++....
T Consensus 743 ~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 743 AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 88899999999999999744 7899999999999999764
No 8
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=321.54 Aligned_cols=435 Identities=22% Similarity=0.221 Sum_probs=371.6
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
..++.+++.|.+. .+..++..|+.+|.+++.+++.+..+.+.|+++.|+++|++++. .++..|
T Consensus 56 ~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~v~~~A 118 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYA 118 (644)
T ss_dssp HHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH------------HHHHHH
T ss_pred ChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH------------HHHHHH
Confidence 3466666666542 35678999999999999988899999999999999999998765 999999
Q ss_pred HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
+++|.+++ ..+..+..+.+.|+++.|+++|++.+. .++..++.+|.+++..+++.+..+...|+++.|+.+
T Consensus 119 ~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l 190 (644)
T 2z6h_A 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190 (644)
T ss_dssp HHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH--------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH
Confidence 99999999 667888889999999999999998754 788888999999998888899999999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
+++.+ ..++..++.+|.+++. ++.++..+++.|+++.|+.++.+.+..++..++++|.+++...+.. ....++++
T Consensus 191 L~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~ 266 (644)
T 2z6h_A 191 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLG 266 (644)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHH
Confidence 98754 5788899999999997 7888999999999999999999999999999999999998764331 11236899
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-C-CHHHHHHHHHHHHHHhcCCC----cch
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQDMH----NQA 368 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~-~~~v~~~a~~~L~~L~~~~~----~~~ 368 (554)
.|+.++.+.+++++..++++|++|+..++..+..+.+.|+++.|+.++.+ + .+.++..++++|+||+.... .+.
T Consensus 267 ~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 267 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999999999999998777888889999999999999985 3 37999999999999987533 244
Q ss_pred hhhhcCCHHHHHHHhcCCC-hhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhh-------------------
Q 008781 369 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ------------------- 428 (554)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~------------------- 428 (554)
.+...|+++.|+++|.+.+ +.++..++++|.|++.+++++..+.+.|+++.|++......
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 5778899999999998875 79999999999999999888888999999988876433211
Q ss_pred ----hhHHHHHHHHHHH-------HHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHh
Q 008781 429 ----ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (554)
Q Consensus 429 ----~~~~~~~~~~~~l-------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (554)
........++.++ ..+...++++.|+.++.+.++.++..++++|++++..++.+..+.+.|+++.|..+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHH
Confidence 1111222333322 23457889999999999999999999999999999888888899999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHhhc
Q 008781 498 LGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+.++++++|..|+++|.+++.+.
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999998754
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5e-37 Score=317.41 Aligned_cols=369 Identities=22% Similarity=0.309 Sum_probs=317.1
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.||.+|++|... +++.+|.+|+|+|.|++. +++.+..+++.|+||.|+.+|.+++. ++++.|
T Consensus 101 ~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~------------~v~e~A 163 (510)
T 3ul1_B 101 LIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQA 163 (510)
T ss_dssp HHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred CHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHH
Confidence 466666666443 356799999999999988 79999999999999999999998776 999999
Q ss_pred HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
+++|+||+ +++++|+.+.+.|+++.|+.++...+..... ..+++.+++++.|++.............++++.|+.+
T Consensus 164 ~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L 240 (510)
T 3ul1_B 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHH
Confidence 99999999 7899999999999999999999876542211 1678899999999998666656666667899999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 008781 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (554)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (554)
+.++++.++..++++|.+++.+.++....+.+.|+++.|+.++.+++..++..++++|+|++.+++..+..+++.|+++.
T Consensus 241 L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~ 320 (510)
T 3ul1_B 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 320 (510)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG
T ss_pred HhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHH
Confidence 99999999999999999999877777778889999999999999999999999999999999998999899999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC--cchhhhhc
Q 008781 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAHN 373 (554)
Q Consensus 296 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~--~~~~l~~~ 373 (554)
|+.+|.+++..+++.|+|+|+|++..++..+..+.+.|+++.|+.++.+++..++..|+|+|+|++.+.. ....+++.
T Consensus 321 L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 9999999999999999999999998888888999999999999999999999999999999999987543 34668899
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc------hhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhh
Q 008781 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 447 (554)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 447 (554)
|++++|+++|.+++++++..++++|.+|....+. ...++ ...
T Consensus 401 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i--------------------------------ee~ 448 (510)
T 3ul1_B 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI--------------------------------EEC 448 (510)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH--------------------------------HHT
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHH--------------------------------HHc
Confidence 9999999999999999999999999998642111 11111 123
Q ss_pred chHHHHHHHHhhCCHHHHHHHHHHHHhhcCC
Q 008781 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (554)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 478 (554)
+.+..|-.+..+++.+|...|..+|-..-..
T Consensus 449 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 449 GGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 3456666777889999999999999877543
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.2e-36 Score=314.41 Aligned_cols=367 Identities=23% Similarity=0.330 Sum_probs=316.3
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.+|.+++.|... .++.++.+|+|+|.+++. +++.+..+++.|++|.|+.+|.+++. +++..|
T Consensus 120 ~ip~Lv~lL~~~-----~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~------------~v~e~A 182 (529)
T 3tpo_A 120 LIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQA 182 (529)
T ss_dssp HHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred CHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHH
Confidence 455566655433 356799999999999998 68888999999999999999999877 999999
Q ss_pred HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
+++|+||+ +++++|..+.+.|+++.|+.+|......... ..+++.++++|.+++.............+++|.|+.+
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L 259 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 259 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSC---HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhH---HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHH
Confidence 99999999 7899999999999999999999876543211 1678899999999998766666666667899999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 008781 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (554)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (554)
+.++++.++..++++|.+++.+.++....+...|+++.|+.+|.+++..++..++++|+|++.+++.....+++.|+++.
T Consensus 260 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 260 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 339 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG
T ss_pred hcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHH
Confidence 99999999999999999999877777778889999999999999999999999999999999998998899999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC--cchhhhhc
Q 008781 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAHN 373 (554)
Q Consensus 296 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~--~~~~l~~~ 373 (554)
|+.++.++++.+++.|+|+|+|++.+++..+..+.+.|+++.|+.++.+++..++..|+|+|+|++.+.. ....+++.
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 9999999999999999999999998888888889999999999999999999999999999999987543 34668999
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc------chh-HHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHh
Q 008781 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNED------NVA-DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (554)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------~~~-~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (554)
|++++|+++|.+++++++..++.+|.+|....+ ... .+.+.||
T Consensus 420 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg------------------------------ 469 (529)
T 3tpo_A 420 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG------------------------------ 469 (529)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCc------------------------------
Confidence 999999999999999999999999999864211 111 1223344
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhcC
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 477 (554)
+..|-.+..+++.+|...|..+|-..-.
T Consensus 470 ---l~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 470 ---LDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp ---HHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 4555567778899999999999977643
No 11
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=8.6e-36 Score=322.49 Aligned_cols=422 Identities=21% Similarity=0.226 Sum_probs=363.1
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~ 154 (554)
+..++..|+.+|.+++.+++++..+.+.|+++.|+.+|++++. .++..|+++|.+++ ..++.+..+.
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~------------~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD------------SVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHhCCChhhHHHHH
Confidence 6679999999999999988889999999999999999998765 99999999999999 6678888999
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHH
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRT 233 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~ 233 (554)
+.|+++.|+.+|++.+. .++..++.+|.+++..+++.+..+...++++.|+.++++.++ ..+..++.+|.+
T Consensus 274 ~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 345 (780)
T ss_dssp HTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999998554 889999999999998888999999999999999999987654 566788999999
Q ss_pred hccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHH
Q 008781 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (554)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~ 313 (554)
++. .+.++..+++.|+++.|+.++.+.+..++..++++|.+|+...... ....++++.|+.++.+.+++++..|++
T Consensus 346 Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~ 421 (780)
T 2z6g_A 346 LSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAG 421 (780)
T ss_dssp HHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 997 6778889999999999999999999999999999999998764331 112468999999999999999999999
Q ss_pred HHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CC-HHHHHHHHHHHHHHhcCCCc----chhhhhcCCHHHHHHHhcCCC
Q 008781 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PD-VQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLDSKN 387 (554)
Q Consensus 314 ~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~-~~v~~~a~~~L~~L~~~~~~----~~~l~~~~~l~~L~~ll~~~~ 387 (554)
+|++|+..++..+..+.+.|+++.|+.++.+ .+ ..++..++++|+||+..... +..+...++++.|++++.+++
T Consensus 422 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~ 501 (780)
T 2z6g_A 422 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501 (780)
T ss_dssp HHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 9999998777888888999999999999985 33 48999999999999865432 446778899999999998877
Q ss_pred h-hHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhh-----------------------hhHHHHHHHHHHH--
Q 008781 388 G-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-----------------------ATKDCVAKTLKRL-- 441 (554)
Q Consensus 388 ~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~-----------------------~~~~~~~~~~~~l-- 441 (554)
. .++..++++|.||+.++.+...+.+.|+++.|++...... ........++.++
T Consensus 502 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~ 581 (780)
T 2z6g_A 502 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR 581 (780)
T ss_dssp CHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc
Confidence 4 9999999999999998888888888898888876432210 1122223333333
Q ss_pred -----HHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHH
Q 008781 442 -----EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (554)
Q Consensus 442 -----~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 516 (554)
..+...++++.|+.++.++++.++..++.+|++++..++.+..+.+.|+++.|+.++.++++++|..|+++|.++
T Consensus 582 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 582 DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661 (780)
T ss_dssp SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 224578899999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HhhcC
Q 008781 517 ANKAT 521 (554)
Q Consensus 517 ~~~~~ 521 (554)
+.+.+
T Consensus 662 ~~~~~ 666 (780)
T 2z6g_A 662 SEDKP 666 (780)
T ss_dssp HTTSC
T ss_pred HcCCh
Confidence 98653
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.6e-36 Score=305.37 Aligned_cols=365 Identities=19% Similarity=0.193 Sum_probs=307.8
Q ss_pred HhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchh
Q 008781 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (554)
Q Consensus 101 ~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~ 179 (554)
...+.++.|+.+|.+++. +++..|+++|.+++ .+++++..+++.|+|+.|+.+|++.+.
T Consensus 45 ~~~~~i~~LV~~L~s~~~------------~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~-------- 104 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLD------------AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK-------- 104 (584)
T ss_dssp CCCCCHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--------
T ss_pred cccccHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--------
Confidence 357889999999998766 99999999999999 799999999999999999999998766
Q ss_pred HHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHh
Q 008781 180 SVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 257 (554)
++++.|+++|.||+.. +++++..+.+.|+++.|+.+|.+ .+..+++.++++|++|+. ++.++..+++ ++++.|+++
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~L 182 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDE 182 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHH
Confidence 9999999999999985 68899999999999999999997 678899999999999998 7888888886 579999997
Q ss_pred hc------------------CCCHHHHHHHHHHHHHHhccChhhHHHHHHc-CCHHHHHHHhcc------CChHHHHHHH
Q 008781 258 LR------------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAA 312 (554)
Q Consensus 258 l~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~~~~~a~ 312 (554)
+. .++..++..|+++|.||+..+++.++.+.+. |+++.|+.++++ .+....+.|+
T Consensus 183 L~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp THHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred HhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 61 2367999999999999999888888888875 566799999875 4567899999
Q ss_pred HHHHHHhcCCc-------------------------ccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCC-
Q 008781 313 LLLGQFAATDS-------------------------DCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMH- 365 (554)
Q Consensus 313 ~~L~nl~~~~~-------------------------~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~- 365 (554)
++|.||+.... .....+.+.++++.|+.+++ +.++.+++.|+++|.||+.+..
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 99999985411 00111122345678888996 5689999999999999987642
Q ss_pred ----cchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHH
Q 008781 366 ----NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 441 (554)
Q Consensus 366 ----~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l 441 (554)
.+..+.+.++++.|+++|.+++..++..|+++|.||+.+..++..+ ..|
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g-------------------------- 395 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKH-------------------------- 395 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHH--------------------------
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhC--------------------------
Confidence 2334556789999999999999999999999999999988776544 333
Q ss_pred HHHHhhchHHHHHHHHhhC--------CHHHHHHHHHHHHhhcC-CchhhHHHHHcCcHHHHHHhhCCC--ChhHHHHHH
Q 008781 442 EEKIHGRVLNHLLYLMRVA--------EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST--NPKQQLDGA 510 (554)
Q Consensus 442 ~~~~~~~~l~~L~~ll~~~--------~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~ 510 (554)
+++.|+.+|.++ +.+++..|+++|+||+. +++++..+.+.|+++.|+.++.+. .+.+++.|+
T Consensus 396 -------~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 396 -------AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp -------HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred -------CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 478888888775 46889999999999965 466888999999999999999976 889999999
Q ss_pred HHHHHHHhhcC
Q 008781 511 VALFKLANKAT 521 (554)
Q Consensus 511 ~~L~~L~~~~~ 521 (554)
++|++|..+.+
T Consensus 469 ~vL~nl~~~~e 479 (584)
T 3l6x_A 469 LVLQTIWGYKE 479 (584)
T ss_dssp HHHHHHHTSHH
T ss_pred HHHHHHHcCHH
Confidence 99999986553
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=4.4e-36 Score=306.16 Aligned_cols=373 Identities=20% Similarity=0.237 Sum_probs=309.5
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.++.+|.+|.+. +..++..|++.|.+++. +++++..+++.|+||.|+++|.+++. +++..|
T Consensus 49 ~i~~LV~~L~s~------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~------------~vq~~A 110 (584)
T 3l6x_A 49 ELPEVIAMLGFR------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHLGA 110 (584)
T ss_dssp CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH------------HHHHHH
T ss_pred cHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH------------HHHHHH
Confidence 478888888654 56799999999999997 89999999999999999999999876 999999
Q ss_pred HHHHHHhcC--ChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 008781 137 AFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (554)
Q Consensus 137 ~~~L~~l~~--~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (554)
+++|.||+. +++++..+++.|+|+.|+++|++.... ++++.++++|+||+. ++.++..+.. ++++.|++
T Consensus 111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-------~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-------DLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-------HHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHH
Confidence 999999994 599999999999999999999974332 889999999999998 7778888885 67999999
Q ss_pred hhc------------------CCCHHHHHHHHHHHHHhccCCccchHHHHhc-CCHHHHHHhhcC------CCHHHHHHH
Q 008781 215 LLE------------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEA 269 (554)
Q Consensus 215 ll~------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a 269 (554)
++. ..++.++..|+++|+|++..+++++..+.+. |+++.|+.++++ .+......|
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 872 2367999999999999998777778888875 667899999874 466899999
Q ss_pred HHHHHHHhccChhh-------------------------HHHHHHcCCHHHHHHHhc-cCChHHHHHHHHHHHHHhcCCc
Q 008781 270 VGVIGNLVHSSPNI-------------------------KKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDS 323 (554)
Q Consensus 270 ~~~L~~L~~~~~~~-------------------------~~~~~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~ 323 (554)
+++|+||+...... ...+...++++.++.+|. +.++.+++.|+++|.||+.+..
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999998652100 011122345678889996 4578999999999999987642
Q ss_pred ----ccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCC--------ChhHH
Q 008781 324 ----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--------NGSLQ 391 (554)
Q Consensus 324 ----~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~ 391 (554)
..+..+.+.++++.|+.+|.+++..+++.++++|.||+.+..++..+ ..|+++.|+.+|.+. +.++.
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTV 420 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHH
Confidence 23334455788999999999999999999999999999988887655 678999999999875 46789
Q ss_pred HHHHHHHHHcc-cCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhC--CHHHHHHH
Q 008781 392 HNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRV 468 (554)
Q Consensus 392 ~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~--~~~v~~~a 468 (554)
..|+++|.||+ .++++...+.+.|+ ++.|+.++++. .+.++..|
T Consensus 421 ~~a~~tL~NL~a~~~~~~~~I~~~g~---------------------------------I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 421 ISILNTINEVIAENLEAAKKLRETQG---------------------------------IEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTH---------------------------------HHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCC---------------------------------hHHHHHHHhCCCCChHHHHHH
Confidence 99999999995 45677777777765 57788899875 89999999
Q ss_pred HHHHHhhcCCchhhHHHHHcCcH
Q 008781 469 ALALAHLCSPDDQRTIFIDGGGL 491 (554)
Q Consensus 469 ~~~L~~l~~~~~~~~~~~~~~~l 491 (554)
+++|++++.+.+.+..+.+.|.-
T Consensus 468 a~vL~nl~~~~elr~~~kk~G~~ 490 (584)
T 3l6x_A 468 ALVLQTIWGYKELRKPLEKEGWK 490 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHTTTCC
T ss_pred HHHHHHHHcCHHHHHHHHHcCCC
Confidence 99999999999988887776553
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2e-35 Score=308.91 Aligned_cols=433 Identities=21% Similarity=0.248 Sum_probs=360.4
Q ss_pred HHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhC-CChHHHHHhhcCC-CCCccccCCCcchHHHHH
Q 008781 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVEK 134 (554)
Q Consensus 57 ~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~Lv~lL~~~-~~~~~~~~~~~~~~~v~~ 134 (554)
..++.+++.|.+ ++..++..|+..|.+++.+++.+..++.. |+++.|+++|.++ +. +++.
T Consensus 17 ~~i~~Lv~lL~~------~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~------------~~~~ 78 (529)
T 1jdh_A 17 RAIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETAR 78 (529)
T ss_dssp CHHHHHHHHHTC------SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCH------------HHHH
T ss_pred hhHHHHHHHhCC------CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCH------------HHHH
Confidence 346777776653 36679999999999999988888777765 8999999999754 33 8999
Q ss_pred HHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 008781 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (554)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (554)
.++.+|.+++.+++++..+.+.|+++.|+++|++++. .++..++++|.+++.+++..+..+.+.|+++.|+.
T Consensus 79 ~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 150 (529)
T 1jdh_A 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150 (529)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence 9999999999888899999999999999999998765 99999999999999987888888889999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHHcCCH
Q 008781 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (554)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (554)
++.++++.++..++.+|.+++.++++++..+.+.|+++.|+.++++. +...+..++.+|++++.+ +..+..+.+.|++
T Consensus 151 ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~ 229 (529)
T 1jdh_A 151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGM 229 (529)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCH
Confidence 99999999999999999999987888999999999999999999865 456677789999999864 6677889999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC-Ccchhhhh
Q 008781 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAH 372 (554)
Q Consensus 294 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~-~~~~~l~~ 372 (554)
+.|+.++.+.+++++..++++|.|++...+... ...++++.|+.++.++++.++..++++|++|+.+. +++..+.+
T Consensus 230 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 306 (529)
T 1jdh_A 230 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306 (529)
T ss_dssp HHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999986543321 12478999999999999999999999999998865 46777889
Q ss_pred cCCHHHHHHHhcC--CChhHHHHHHHHHHHcccCCc----chhHHHhhCccccccchhhhhh--hhHHHHHHHHHHH---
Q 008781 373 NGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNED----NVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRL--- 441 (554)
Q Consensus 373 ~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~i~~L~~~~~~~~--~~~~~~~~~~~~l--- 441 (554)
.|+++.|++++.+ .++.++..++.+|++++.... .+..+.+.|+++.|++...... ..+.....++.++
T Consensus 307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 9999999999975 347999999999999987633 2457888899888876443321 2222333444443
Q ss_pred ----HHHHhhchHHHHHHHHhhCCHHHHHHHH----------------------HHHHhhcCCchhhHHHHHcCcHHHHH
Q 008781 442 ----EEKIHGRVLNHLLYLMRVAEKGVQRRVA----------------------LALAHLCSPDDQRTIFIDGGGLELLL 495 (554)
Q Consensus 442 ----~~~~~~~~l~~L~~ll~~~~~~v~~~a~----------------------~~L~~l~~~~~~~~~~~~~~~l~~L~ 495 (554)
..+.+.++++.|+.+++++++.+|..++ .+|++|+..++.+..+.+.|+++.|+
T Consensus 387 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~ 466 (529)
T 1jdh_A 387 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 466 (529)
T ss_dssp GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHH
Confidence 2345778999999999987777776544 55566777777888899999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhh
Q 008781 496 GLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 496 ~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
.++.++++.++..|+++|.+++.+
T Consensus 467 ~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 467 QLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999865
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.4e-35 Score=300.71 Aligned_cols=401 Identities=16% Similarity=0.224 Sum_probs=342.8
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc---ChhhHHHHHhC-CChHHHHHhhcCC-CCCccccCCCcchHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK---NEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~-g~v~~Lv~lL~~~-~~~~~~~~~~~~~~~v~ 133 (554)
++.+++.|.+. +..++..|+..|+.+.. ++.. ..+++. |+++.|+++|.++ +. .++
T Consensus 22 l~~l~~~l~s~------~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~------------~v~ 82 (450)
T 2jdq_A 22 TSDMIEMIFSK------SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENC------------TLQ 82 (450)
T ss_dssp CHHHHHHHHSS------CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCH------------HHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCH------------HHH
Confidence 66666666443 66789999999999753 3444 446666 9999999999887 44 899
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 008781 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (554)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (554)
..++++|.+++ .+++....+++.|+++.|+.+|++.+. +++..|+++|.+++.+.+..+..+...|+++.|
T Consensus 83 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--------~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 154 (450)
T 2jdq_A 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--------DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154 (450)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHH
Confidence 99999999999 678888888999999999999998655 999999999999999888888888899999999
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHc
Q 008781 213 VELLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (554)
Q Consensus 213 ~~ll~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 290 (554)
+.++.+ .+..++..++++|.+++.+. +.....+. .++++.|+.++.++++.++..++++|.+++...+.....+...
T Consensus 155 ~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 233 (450)
T 2jdq_A 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA 233 (450)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHc
Confidence 999996 78999999999999999754 34333333 7899999999999999999999999999998777777888889
Q ss_pred CCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC-cchh
Q 008781 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAG 369 (554)
Q Consensus 291 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~-~~~~ 369 (554)
|+++.|+.++.+.++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+.. ....
T Consensus 234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 313 (450)
T 2jdq_A 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT 313 (450)
T ss_dssp TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999998777777778889999999999999999999999999999997543 3455
Q ss_pred hhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC--CcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhh
Q 008781 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 447 (554)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 447 (554)
+.+.++++.|++++.++++.++..|+++|.+++.. ++....+++.
T Consensus 314 ~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~--------------------------------- 360 (450)
T 2jdq_A 314 VIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL--------------------------------- 360 (450)
T ss_dssp HHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---------------------------------
T ss_pred HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC---------------------------------
Confidence 77789999999999999999999999999999864 3333333333
Q ss_pred chHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch------------hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHH
Q 008781 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (554)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 515 (554)
++++.|+.++.+.++.++..++++|.+++...+ ....+.+.||++.|..+..+++..+++.|..+|.+
T Consensus 361 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp TCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 357888999999999999999999999975432 34677888999999999999999999999999999
Q ss_pred HHhhc
Q 008781 516 LANKA 520 (554)
Q Consensus 516 L~~~~ 520 (554)
+-...
T Consensus 441 ~~~~~ 445 (450)
T 2jdq_A 441 YFGTE 445 (450)
T ss_dssp HHCCC
T ss_pred HCCcc
Confidence 88644
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=300.64 Aligned_cols=365 Identities=19% Similarity=0.220 Sum_probs=299.0
Q ss_pred HHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCCh-
Q 008781 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL- 159 (554)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l- 159 (554)
+..+.|..+.++++.|..+++.|++|.|+++|+..+.+...-.+...+++++..|+|+|.||+ ..++..+...+.+++
T Consensus 48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~ 127 (458)
T 3nmz_A 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127 (458)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 478899999999999999999999999999999754311101111235699999999999999 778888887777777
Q ss_pred ---------HHHHHHHhccccCccc-c-----chhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC------
Q 008781 160 ---------SHLVNLLKRHMDSNCS-R-----AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------ 218 (554)
Q Consensus 160 ---------~~L~~lL~~~~~~~~~-~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~------ 218 (554)
+.+++++.......+. + +....+-.|+|+|.|++. ++++|..+.+.|+++.|+.++..
T Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~ 206 (458)
T 3nmz_A 128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYG 206 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence 6667777765311110 0 011233489999999987 68899999999999999999952
Q ss_pred -----CCHHHHHHHHHHHHHhccCCccchHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHHcC
Q 008781 219 -----TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAG 291 (554)
Q Consensus 219 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~ 291 (554)
.++.++..|+++|.|++.+++.++..+.. .|+++.|+.+|.+++++++..|+++|+||+.. ++.++..+.+.|
T Consensus 207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 24678999999999999876667766654 56699999999999999999999999999875 567889999999
Q ss_pred CHHHHHHHh-ccCChHHHHHHHHHHHHHhcCCcccHHHHH-HcCCHHHHHHHhCCCCH----HHHHHHHHHHHHHhc---
Q 008781 292 ALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQ--- 362 (554)
Q Consensus 292 ~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~----~v~~~a~~~L~~L~~--- 362 (554)
+++.|+.+| .+.+..+++.++.+|+||+...++.+..+. ..|+++.|+.+|.+++. .+++.++++|.||+.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999975 556789999999999999875666777777 78999999999997543 489999999999995
Q ss_pred -CCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcc-cCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHH
Q 008781 363 -DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 440 (554)
Q Consensus 363 -~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~ 440 (554)
+++++..+.+.|+++.|+.+|.+++..++..|+++|+|++ .+++++..+++.|+
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~------------------------ 422 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA------------------------ 422 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH------------------------
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC------------------------
Confidence 5566778899999999999999999999999999999998 46677777777664
Q ss_pred HHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 441 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 441 l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
++.|+.++++.++.++..|+++|.||+....
T Consensus 423 ---------I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 423 ---------VSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp ---------HHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred ---------HHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 5778889999999999999999999976643
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.1e-36 Score=298.89 Aligned_cols=367 Identities=20% Similarity=0.215 Sum_probs=297.4
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCc----cccchhH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN----CSRAVNS 180 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~----~~~~~~~ 180 (554)
.++.|+..+.+.+. + ...+.|..++.+++.|..+++.|++|.|+++|+..+.+. ....+.+
T Consensus 33 ~~~~l~~~~~~~~~------------~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~ 97 (458)
T 3nmz_A 33 MVYSLLSMLGTHDK------------D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97 (458)
T ss_dssp ------------CC------------H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred HHHHHHHHhcCCCH------------H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence 46777777766655 3 377888889988899999999999999999999754310 0001129
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCCh----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHHhcc
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGI----------PPLVELLEFTD--TK-----VQR-------AAAGALRTLAF 236 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~~l~~ 236 (554)
++..|+|+|.|++...++......+.+.+ +.+++++.+.. .+ ++. .|+|+|.|++.
T Consensus 98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 99999999999999888877776777777 66667776542 11 333 89999999987
Q ss_pred CCccchHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHH-cCCHHHHHHHhccCC
Q 008781 237 KNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCC 304 (554)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~~ 304 (554)
+++++..+.+.|+++.|+.+|.. .++.++..|+++|.||+.+++..+..+.. .|+++.|+.+|.+++
T Consensus 178 -~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 -DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 68999999999999999999952 24678999999999999887777666654 566999999999999
Q ss_pred hHHHHHHHHHHHHHhcC-CcccHHHHHHcCCHHHHHHHh-CCCCHHHHHHHHHHHHHHhc-CCCcchhhh-hcCCHHHHH
Q 008781 305 SESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-DMHNQAGIA-HNGGLVPLL 380 (554)
Q Consensus 305 ~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~L~~-~~~~~~~l~-~~~~l~~L~ 380 (554)
.+++..|+++|+||+.. ++.++..+.+.|+++.|+.+| .+++..+++.++.+|+||+. .++++..+. ..|+++.|+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv 336 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999864 467888899999999999975 56788999999999999998 557777777 789999999
Q ss_pred HHhcCCCh----hHHHHHHHHHHHccc----CCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHH
Q 008781 381 KLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (554)
Q Consensus 381 ~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 452 (554)
.++.+.+. +++..|+++|.||+. +++++..+.+.|+ ++.
T Consensus 337 ~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~---------------------------------i~~ 383 (458)
T 3nmz_A 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC---------------------------------LQT 383 (458)
T ss_dssp HHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---------------------------------HHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc---------------------------------HHH
Confidence 99987654 499999999999985 6666666666664 678
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhcC-CchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 453 LLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
|+.+|++++..++.+|+++|+|++. +++++..+.+.|+++.|+.++.++++.+++.|+++|.||+.+.
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999984 5778889999999999999999999999999999999999875
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.2e-35 Score=302.18 Aligned_cols=360 Identities=19% Similarity=0.257 Sum_probs=304.2
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (554)
.+|.|+++|++++. +++..|+++|.+++ .++..+..+.+.|+++.|+++|++++. +++.
T Consensus 3 ~l~~lv~~L~s~~~------------~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--------~~~~ 62 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE------------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQ 62 (457)
T ss_dssp CHHHHHHHHHSSCT------------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHH
T ss_pred CHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58999999999877 99999999999999 777788899999999999999997665 8999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh----
Q 008781 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---- 258 (554)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll---- 258 (554)
.|+++|.||+.++++++..+.+.|++|.|+++|. ++++.+++.++++|+|++.+ +.++..+++ |+++.|+.++
T Consensus 63 ~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~ 140 (457)
T 1xm9_A 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF 140 (457)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc
Confidence 9999999999977999999999999999999999 88999999999999999985 788888888 9999999999
Q ss_pred ----cC--------CCHHHHHHHHHHHHHHhccChhhHHHHHHc-CCHHHHHHHhcc------CChHHHHHHHHHHHHHh
Q 008781 259 ----RS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAALLLGQFA 319 (554)
Q Consensus 259 ----~~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~~~~~a~~~L~nl~ 319 (554)
.+ .+..+...|+++|+||+.+ ++.+..+.+. |+++.|+.++.+ .+..+...++++|.|++
T Consensus 141 s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred cccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 32 2467778999999999987 7888888887 999999999985 45678888999999986
Q ss_pred cCC--------------------------------------------------cccHHHHHHcCCHHHHHHHhCC-CCHH
Q 008781 320 ATD--------------------------------------------------SDCKVHIVQRGAVRPLIEMLQS-PDVQ 348 (554)
Q Consensus 320 ~~~--------------------------------------------------~~~~~~~~~~~~~~~L~~~l~~-~~~~ 348 (554)
... +.....+.+.|+++.|+.+|.+ .++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 210 1111233455678889999984 5789
Q ss_pred HHHHHHHHHHHHhcCCCc------chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccc
Q 008781 349 LREMSAFALGRLAQDMHN------QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (554)
Q Consensus 349 v~~~a~~~L~~L~~~~~~------~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 422 (554)
+++.|+|+|+||+.+... +..+.+.|+++.|++++.+++..++..|+++|.|++.+.+....+ ..
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~-------- 370 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GN-------- 370 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HH--------
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HH--------
Confidence 999999999999986543 223346899999999999999999999999999999876554332 22
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCC------HHHHHHHHHHHHhhcCC-chhhHHHHHcCcHHHHH
Q 008781 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE------KGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLL 495 (554)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~ 495 (554)
++++.|+.+|...+ +++...++++|.++... ++....+.+.||++.|+
T Consensus 371 -------------------------~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 371 -------------------------QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425 (457)
T ss_dssp -------------------------HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH
T ss_pred -------------------------hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 24788888888754 46888999999999654 55788889999999999
Q ss_pred HhhCCC-ChhHHHHHHHHHHHHHhhcC
Q 008781 496 GLLGST-NPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 496 ~ll~~~-~~~v~~~a~~~L~~L~~~~~ 521 (554)
.++.++ ++++++.|++.|.++..+.+
T Consensus 426 ~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 426 NLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 999999 99999999999999987654
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=304.61 Aligned_cols=433 Identities=21% Similarity=0.233 Sum_probs=364.6
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhC-CChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.++.+++.|.+ ++..++..|+.+|.+++.+...+..++.. |+++.|+++|.+.+. ++++..|
T Consensus 15 ~i~~Lv~lL~~------~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~-----------~~~~~~A 77 (644)
T 2z6h_A 15 AIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCT 77 (644)
T ss_dssp THHHHHHHHTC------SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-----------HHHHHHH
T ss_pred hHHHHHHHHcC------CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-----------HHHHHHH
Confidence 46777777653 36679999999999999977777777765 899999999986522 2899999
Q ss_pred HHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 008781 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (554)
Q Consensus 137 ~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll 216 (554)
+.+|.+++.+++++..+.+.|+++.|+.+|++.+. .++..|+++|.|++...+..+..+.+.|+++.|+.++
T Consensus 78 ~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 78 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp HHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 99999999888899999999999999999998765 9999999999999998778888888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 008781 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (554)
Q Consensus 217 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 295 (554)
+++++.++..++.+|.+++..+++++..+.+.|+++.|+.++.+.+ ..++..++.+|++++.. +..+..+++.|+++.
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQA 228 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHH
Confidence 9999999999999999999878889999999999999999998654 67888999999999864 677889999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC-CcchhhhhcC
Q 008781 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNG 374 (554)
Q Consensus 296 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~-~~~~~l~~~~ 374 (554)
|+.++.+.+..+++.++++|.|++...+.. ....++++.|+.++.++++.++..++++|++|+.+. .++..+.+.|
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999999999998654332 112368999999999999999999999999999865 4567788899
Q ss_pred CHHHHHHHhcCC--ChhHHHHHHHHHHHcccCCc----chhHHHhhCccccccchhhhh--hhhHHHHHHHHHHHH----
Q 008781 375 GLVPLLKLLDSK--NGSLQHNAAFALYGLADNED----NVADFIRVGGVQKLQDGEFIV--QATKDCVAKTLKRLE---- 442 (554)
Q Consensus 375 ~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~i~~L~~~~~~~--~~~~~~~~~~~~~l~---- 442 (554)
+++.|+.++.+. .+.++..|+++|.+|+.... ....+.+.|+++.|++..... ...+.....++.++.
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 999999999763 37999999999999986532 234477788888877644432 123333344444442
Q ss_pred ---HHHhhchHHHHHHHHhhCC----------------------HHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHh
Q 008781 443 ---EKIHGRVLNHLLYLMRVAE----------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (554)
Q Consensus 443 ---~~~~~~~l~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (554)
.+...++++.|+.++.+.+ ..++..++.+|++|+..+..+..+.+.|+++.|+.+
T Consensus 386 ~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~l 465 (644)
T 2z6h_A 386 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 465 (644)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHH
Confidence 3568889999999998743 467778899999999988888899999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHhh
Q 008781 498 LGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~~~ 519 (554)
+.++++.++..|+++|.+++.+
T Consensus 466 L~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 466 LYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999865
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.3e-34 Score=292.84 Aligned_cols=361 Identities=16% Similarity=0.218 Sum_probs=296.5
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (554)
++.++..|.+. +..++..|++.|.+++. ++..+..+++.|++|.|+++|++++. +++..|+
T Consensus 4 l~~lv~~L~s~------~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~------------~~~~~A~ 65 (457)
T 1xm9_A 4 IPKAVQYLSSQ------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAA 65 (457)
T ss_dssp HHHHHHHHHSS------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHH
T ss_pred HHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 67778877765 55689999999999998 57778789999999999999998766 9999999
Q ss_pred HHHHHhc-CChhhHHHHHHcCChHHHHHHHh-ccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~-~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
++|.||+ .+++++..+++.|+++.|+++|+ +.+. ++++.++|+|+|++.+ +..+..+.. |+++.|+.+
T Consensus 66 ~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~l 135 (457)
T 1xm9_A 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADR 135 (457)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHH
Confidence 9999999 66999999999999999999998 4444 9999999999999996 778888888 999999999
Q ss_pred hc--------C--------CCHHHHHHHHHHHHHhccCCccchHHHHhc-CCHHHHHHhhcC------CCHHHHHHHHHH
Q 008781 216 LE--------F--------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGV 272 (554)
Q Consensus 216 l~--------~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~ 272 (554)
+. + .++.++..|+++|+|++.+ ++++..+.+. |+++.|+.++.+ .+..+...++.+
T Consensus 136 l~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 214 (457)
T 1xm9_A 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214 (457)
T ss_dssp TTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHH
T ss_pred HhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHH
Confidence 93 2 2466778999999999985 8888889987 999999999985 456788899999
Q ss_pred HHHHhccC--------------------------------------------------hhhHHHHHHcCCHHHHHHHhcc
Q 008781 273 IGNLVHSS--------------------------------------------------PNIKKEVLAAGALQPVIGLLSS 302 (554)
Q Consensus 273 L~~L~~~~--------------------------------------------------~~~~~~~~~~~~l~~L~~lL~~ 302 (554)
|+|++... +...+.+++.|+++.++.+|.+
T Consensus 215 L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~ 294 (457)
T 1xm9_A 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294 (457)
T ss_dssp HHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh
Confidence 99986321 0111233455678889999975
Q ss_pred C-ChHHHHHHHHHHHHHhcCCccc-----HHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCH
Q 008781 303 C-CSESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 376 (554)
Q Consensus 303 ~-~~~~~~~a~~~L~nl~~~~~~~-----~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l 376 (554)
+ ++.+++.|+|+|+|++.++... +..+.+.|++|.|+.+|.+++..++..|+|+|.|++.+..++..+ ..+++
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~~~i 373 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQVF 373 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HHHTH
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HHhhh
Confidence 4 5889999999999999765432 223336899999999999999999999999999999977665444 45899
Q ss_pred HHHHHHhcCCC------hhHHHHHHHHHHHcccCC-cchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhch
Q 008781 377 VPLLKLLDSKN------GSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (554)
Q Consensus 377 ~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 449 (554)
++|+++|...+ .++...++++|.++.... +....+.+.| .
T Consensus 374 ~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g---------------------------------~ 420 (457)
T 1xm9_A 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS---------------------------------M 420 (457)
T ss_dssp HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH---------------------------------H
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcC---------------------------------C
Confidence 99999998764 368889999999997543 3444444444 4
Q ss_pred HHHHHHHHhhC-CHHHHHHHHHHHHhhcCCchhh
Q 008781 450 LNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQR 482 (554)
Q Consensus 450 l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~ 482 (554)
++.|+.+++++ ++.+++.|+++|.++..+.+.+
T Consensus 421 l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 421 LNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 68888999998 9999999999999998776543
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.3e-33 Score=292.77 Aligned_cols=366 Identities=19% Similarity=0.239 Sum_probs=320.2
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CCh-hhHHHHHHcCChHHHHHHHhccccCccccchhH
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~-~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~ 180 (554)
...++.|+..|.+++. +++..|+++|.+++ ..+ .....++..|+++.|+.+|.+.+.. .
T Consensus 73 ~~~l~~lv~~L~s~~~------------~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~-------~ 133 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDN------------NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP-------Q 133 (528)
T ss_dssp --CHHHHHHHHTSSCH------------HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCH-------H
T ss_pred HHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCH-------H
Confidence 3469999999988766 99999999999997 433 6788899999999999999887522 9
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh-c
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-R 259 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~ 259 (554)
++..|+++|.+++.+++..+..+...|+++.|+.++.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .
T Consensus 134 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~ 213 (528)
T 4b8j_A 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE 213 (528)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc
Confidence 999999999999998889999999999999999999999999999999999999987788888999999999999999 5
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHH
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~ 339 (554)
+.+..++..++++|++|+...+.. ......++++.|+.++.+.+++++..++++|++++...+.....+.+.|+++.|+
T Consensus 214 ~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv 292 (528)
T 4b8j_A 214 HTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (528)
T ss_dssp TCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHH
Confidence 778999999999999999875443 3344589999999999999999999999999999977666667888999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhcCCCc-chhhhhcCCHHHHHHHhcCC-ChhHHHHHHHHHHHcccCCc-chhHHHhhCc
Q 008781 340 EMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNED-NVADFIRVGG 416 (554)
Q Consensus 340 ~~l~~~~~~v~~~a~~~L~~L~~~~~~-~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~ 416 (554)
.+|.++++.++..++++|+|++.+.+. ...+.+.|+++.|+.++.++ ++.++..|+++|.|++.... ....+++.
T Consensus 293 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~-- 370 (528)
T 4b8j_A 293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINA-- 370 (528)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--
T ss_pred HHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHC--
Confidence 999999999999999999999986543 45577889999999999998 89999999999999987533 22333333
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHH
Q 008781 417 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELL 494 (554)
Q Consensus 417 i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L 494 (554)
++++.|+.++.+.++.++..|+++|++++.. ++....+.+.|+++.|
T Consensus 371 -------------------------------~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 371 -------------------------------GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp -------------------------------TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred -------------------------------CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 4578899999999999999999999999765 5677888899999999
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 495 LGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 495 ~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+.++.++++.++..++.+|.+|....+
T Consensus 420 ~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 420 CDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987543
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.1e-33 Score=302.54 Aligned_cols=432 Identities=21% Similarity=0.243 Sum_probs=359.6
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhC-CChHHHHHhhcCC-CCCccccCCCcchHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~Lv~lL~~~-~~~~~~~~~~~~~~~v~~~ 135 (554)
.++.++..|.+ .+..++..|+.+|.+++.+...+..+... |+++.|+++|..+ +. +++..
T Consensus 151 ~ip~Lv~lL~~------~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~------------~vr~~ 212 (780)
T 2z6g_A 151 AIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETARC 212 (780)
T ss_dssp HHHHHHHHHHC------SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCH------------HHHHH
T ss_pred CHHHHHHHHCC------CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCH------------HHHHH
Confidence 34455554432 36679999999999999987777777755 8999999999865 33 89999
Q ss_pred HHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 008781 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (554)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (554)
|+.+|.+++..++++..+.+.|+++.|+.+|++.+. .++..|+++|.|++...+..+..+...|+++.|+.+
T Consensus 213 Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 213 TSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence 999999999888889999999999999999998765 999999999999999888888888899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
+.+++..++..++.+|.+++..+++++..+.+.|+++.|+.++++.+ ...+..++.+|++|+.. +..+..++..|+++
T Consensus 285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~ 363 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQ 363 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHH
Confidence 99999999999999999999878889999999999999999999765 45667889999999864 56678899999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC-Ccchhhhhc
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHN 373 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~-~~~~~l~~~ 373 (554)
.|+.++.+.+..+++.++++|.+++...... ....++++.|+.++.+.++.++..++++|++|+.+. .++..+.+.
T Consensus 364 ~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~ 440 (780)
T 2z6g_A 364 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440 (780)
T ss_dssp HHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 9999999999999999999999998654332 112468899999999999999999999999999865 456678889
Q ss_pred CCHHHHHHHhcC-CC-hhHHHHHHHHHHHcccCCcc----hhHHHhhCccccccchhhhhh--hhHHHHHHHHHHHH---
Q 008781 374 GGLVPLLKLLDS-KN-GSLQHNAAFALYGLADNEDN----VADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRLE--- 442 (554)
Q Consensus 374 ~~l~~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~L~~~~~~~~--~~~~~~~~~~~~l~--- 442 (554)
|+++.|++++.+ .+ ..++..|+++|++|+..... +..+...++++.|++...... ..+...+.++.++.
T Consensus 441 g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 999999999976 33 48999999999999865332 346777888888776443221 23333334444442
Q ss_pred ----HHHhhchHHHHHHHHhhCC----------------------HHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHH
Q 008781 443 ----EKIHGRVLNHLLYLMRVAE----------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG 496 (554)
Q Consensus 443 ----~~~~~~~l~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 496 (554)
.+...++++.|+.++.+.+ .+++..++.+|++|+..+.++..+.+.|+++.|+.
T Consensus 521 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~ 600 (780)
T 2z6g_A 521 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQ 600 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHH
Confidence 3457789999999997643 45677899999999988888888999999999999
Q ss_pred hhCCCChhHHHHHHHHHHHHHhh
Q 008781 497 LLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 497 ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
++.++++.++..|+.+|.+|+.+
T Consensus 601 lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 601 LLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999854
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=8.1e-33 Score=288.56 Aligned_cols=367 Identities=17% Similarity=0.242 Sum_probs=319.5
Q ss_pred hCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-C-ChhhHHHHHHcCChHHHHHHHhcc-ccCccccch
Q 008781 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRH-MDSNCSRAV 178 (554)
Q Consensus 102 ~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-~~~~~~~i~~~g~l~~L~~lL~~~-~~~~~~~~~ 178 (554)
..+.++.|+..|.+++. +++..|+.+|.++. . .......++..|+++.|+.+|.+. +.
T Consensus 85 ~~~~i~~lv~~L~s~~~------------~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------- 145 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDM------------QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------- 145 (530)
T ss_dssp --CCHHHHHHHHSCSSH------------HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH-------
T ss_pred hHHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH-------
Confidence 35779999999988766 89999999999997 3 245667788999999999999886 33
Q ss_pred hHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh
Q 008781 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (554)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (554)
.++..|+++|.+++...+..+..+...|+++.|+.++.++++.++..|+++|.+++..++..+..+...|+++.|+.++
T Consensus 146 -~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll 224 (530)
T 1wa5_B 146 -MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF 224 (530)
T ss_dssp -HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG
T ss_pred -HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh
Confidence 8999999999999998888888888999999999999999999999999999999987778888889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHH
Q 008781 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (554)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L 338 (554)
.+.+..++..++++|++|+.+...........++++.|+.++.+.++.++..++++|++++...+.....+.+.|+++.|
T Consensus 225 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L 304 (530)
T 1wa5_B 225 NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304 (530)
T ss_dssp GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHH
Confidence 99999999999999999997652323455568999999999999999999999999999997777777778889999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhcCCCc-chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC-cchhHHHhhCc
Q 008781 339 IEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGG 416 (554)
Q Consensus 339 ~~~l~~~~~~v~~~a~~~L~~L~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~ 416 (554)
+.++.++++.++..++++|++++.+.+. ...+...|+++.|+.++.++++.++..|+++|.+++... +....+++.
T Consensus 305 v~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-- 382 (530)
T 1wa5_B 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA-- 382 (530)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--
T ss_pred HHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--
Confidence 9999999999999999999999976544 345677899999999999999999999999999998643 333333433
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--c--hhhHHHHHcCcHH
Q 008781 417 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D--DQRTIFIDGGGLE 492 (554)
Q Consensus 417 i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~~~~~~~l~ 492 (554)
++++.|+.++.++++.++..|+++|++++.. + +....+.+.|+++
T Consensus 383 -------------------------------~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~ 431 (530)
T 1wa5_B 383 -------------------------------NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431 (530)
T ss_dssp -------------------------------TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHH
T ss_pred -------------------------------CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHH
Confidence 3578889999999999999999999999653 3 5667788999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 493 LLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 493 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
.|+.++.++++.++..++++|.++....+
T Consensus 432 ~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 432 PLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998653
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.2e-32 Score=281.68 Aligned_cols=376 Identities=19% Similarity=0.248 Sum_probs=312.5
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.++.+++.|.+. .+..++..|+++|.+++. +++....+++.|+++.|+++|++++. .++..|
T Consensus 65 ~i~~L~~~L~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~vr~~a 127 (450)
T 2jdq_A 65 VVARFVEFLKRK-----ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE------------DVQEQA 127 (450)
T ss_dssp HHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred cHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH------------HHHHHH
Confidence 355555555432 256799999999999998 57888888899999999999998765 999999
Q ss_pred HHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHHHH
Q 008781 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVE 214 (554)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~L~~ 214 (554)
+++|++++ .+++++..+...|+++.|+.++.+..+. .++..++++|.+++... +.....+ ..++++.|+.
T Consensus 128 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ 199 (450)
T 2jdq_A 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL-------TMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSW 199 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCH-------HHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHH
Confidence 99999999 7788999999999999999999853221 99999999999999754 3333222 3789999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
++.++++.++..++++|.+++...++....+...|+++.|+.++.++++.++..++++|++++.+++...+.+.+.|+++
T Consensus 200 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 279 (450)
T 2jdq_A 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ 279 (450)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHH
Confidence 99999999999999999999986667777888899999999999999999999999999999988888778888899999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC--Ccchhhhh
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAH 372 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~--~~~~~l~~ 372 (554)
.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..++++|+|++.+. +....+.+
T Consensus 280 ~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999777777777888999999999999999999999999999998742 34455778
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHH
Q 008781 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (554)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 452 (554)
.|+++.|++++.++++.++..++++|.+++...+..... ..+.+.+. ...+...+.++.
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~--------------------~~~l~~~g~~~~ 418 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPY--------------------CALIEEAYGLDK 418 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHH--------------------HHHHHHHHCHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHH--------------------HHHHHHcCcHHH
Confidence 899999999999999999999999999998654322111 00111110 011223445778
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhcCCc
Q 008781 453 LLYLMRVAEKGVQRRVALALAHLCSPD 479 (554)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~~~ 479 (554)
|..++.++++.++..|..+|.++...+
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 888888889999999999999986544
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.1e-32 Score=264.56 Aligned_cols=283 Identities=20% Similarity=0.263 Sum_probs=244.6
Q ss_pred CCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhcccc---CccccchhHHHHHHHHHHHHHhhcCchhH
Q 008781 124 NLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD---SNCSRAVNSVIRRAADAITNLAHENSSIK 200 (554)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~---~~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 200 (554)
.|.|+++.+. +|+++|+|++.++++|+.+++.|+++.|+.+|..... ........++++.|+++|.|||..++..+
T Consensus 41 ~~~~~~~~~~-~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k 119 (354)
T 3nmw_A 41 MPAPVEHQIC-PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119 (354)
T ss_dssp CCCGGGGTHH-HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred CCCcchHHHH-HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3666676666 7999999999889999999999999999999964310 00000112899999999999999887788
Q ss_pred HHHHhc-CChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHh
Q 008781 201 TRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 201 ~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~L~ 277 (554)
..+... |.+|.|+.+|.++++.++..|+++|+|++.. ++.++..+.+.|+++.|+++| ++.+..++..++++|+||+
T Consensus 120 ~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 877655 4599999999999999999999999999974 567889999999999999974 6778999999999999999
Q ss_pred ccChhhHHHHH-HcCCHHHHHHHhccCCh----HHHHHHHHHHHHHhc---CCcccHHHHHHcCCHHHHHHHhCCCCHHH
Q 008781 278 HSSPNIKKEVL-AAGALQPVIGLLSSCCS----ESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (554)
Q Consensus 278 ~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~L~~~l~~~~~~v 349 (554)
..+++++..+. ..|+++.|+.+|.+.+. ++++.|+++|.|++. .+++.+..+.+.|+++.|+.+|.+++..+
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 279 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHH
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHH
Confidence 86677777777 68999999999987654 589999999999986 57888888999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc
Q 008781 350 REMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 350 ~~~a~~~L~~L~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
++.|+++|+||+. +++++..+.+.|++++|++++.+++..+++.|+++|.||+.+.+.
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999995 456677899999999999999999999999999999999887554
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=3.8e-31 Score=256.92 Aligned_cols=281 Identities=21% Similarity=0.207 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHc
Q 008781 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~ 156 (554)
..+..|+++|.+++.++++|..+++.|+++.|+.+|..+.. .......+.++.++..|+++|.||+ .+++++..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~-~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCE-MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccc-cccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 35668999999999999999999999999999999963210 0000001124589999999999999 666788888655
Q ss_pred -CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHH
Q 008781 157 -GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRT 233 (554)
Q Consensus 157 -g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~ 233 (554)
|++|.|+++|++.+. ++++.|+++|.||+.. ++.++..+.+.|+++.|+++| .+.++.+++.++++|+|
T Consensus 126 ~GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 126 KGCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 559999999997665 9999999999999984 577899999999999999975 66789999999999999
Q ss_pred hccCCccchHHHH-hcCCHHHHHHhhcCCCH----HHHHHHHHHHHHHhc---cChhhHHHHHHcCCHHHHHHHhccCCh
Q 008781 234 LAFKNDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS 305 (554)
Q Consensus 234 l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~ 305 (554)
++.+.++++..+. ..|+++.|+.+|.+.++ +++..++++|+||+. .+++.++.+.+.|+++.|+.+|.+++.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 9986677777777 78999999999987654 599999999999986 578888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc
Q 008781 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~ 367 (554)
.+++.|+++|+|++..+++++..+.+.|+++.|+.++.+++..+++.|+++|.||+.+.+.+
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999778889999999999999999999999999999999999999875543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=4.7e-27 Score=220.41 Aligned_cols=243 Identities=31% Similarity=0.380 Sum_probs=228.1
Q ss_pred CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
|.++.|+++|++++. +++..|+++|.+++ .+++++..+.+.|+++.|+++|++.+. +++
T Consensus 2 ~~i~~L~~~L~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~ 61 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS------------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQ 61 (252)
T ss_dssp CHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHH
T ss_pred CcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHH
Confidence 678999999998776 99999999999999 777799999999999999999998765 999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (554)
..++++|.+++..++..+..+...|+++.++.+++++++.++..++++|.+++..++..+..+.+.|+++.|+.++.+++
T Consensus 62 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99999999999987999999999999999999999999999999999999999778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh
Q 008781 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (554)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l 342 (554)
+.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..++++|++++..++..+..+.+.|+++.|+.++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999988888888999999999999999999999999999999999987788888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCc
Q 008781 343 QSPDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 343 ~~~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
.++++.+++.|+++|.||+.....
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999976644
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.8e-26 Score=215.03 Aligned_cols=243 Identities=30% Similarity=0.386 Sum_probs=225.5
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (554)
|.++.|+.+|++.+. +++..|+++|.+++..+++.+..+...|+++.|+.+++++++.++..++++|.+++.
T Consensus 2 ~~i~~L~~~L~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS--------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp CHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 568999999998775 999999999999999888889999999999999999999999999999999999998
Q ss_pred CCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHH
Q 008781 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (554)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 316 (554)
+++.++..+.+.|+++.++.++.++++.++..++++|++++..++..+..+.+.|+++.|+.++.++++.++..++++|+
T Consensus 74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred HHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC-CcchhhhhcCCHHHHHHHhcCCChhHHHHHH
Q 008781 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (554)
Q Consensus 317 nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (554)
|++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+. ..+..+.+.|+++.|++++.++++.++..|+
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 233 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence 999877777788899999999999999999999999999999999754 3456788899999999999999999999999
Q ss_pred HHHHHcccCCcc
Q 008781 396 FALYGLADNEDN 407 (554)
Q Consensus 396 ~~L~~l~~~~~~ 407 (554)
++|.+|+.....
T Consensus 234 ~~L~~l~~~~~~ 245 (252)
T 4hxt_A 234 RALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHTCBC
T ss_pred HHHHHHHcCCCc
Confidence 999999876543
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=5.1e-26 Score=213.35 Aligned_cols=238 Identities=24% Similarity=0.351 Sum_probs=220.5
Q ss_pred CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
...+.++..|++++. +++..|+++|.++. .+++.+..+.+.|+++.|+++|++.+. +++
T Consensus 12 ~~~~~~~~~L~s~~~------------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~ 71 (252)
T 4db8_A 12 SELPQMTQQLNSDDM------------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QIL 71 (252)
T ss_dssp CSHHHHHHHHHSSCS------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHH
T ss_pred chHHHHHHHHcCCCH------------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHH
Confidence 457889999999888 99999999998766 777888999999999999999998765 999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccch-HHHHhcCCHHHHHHhhcCC
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLRSE 261 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~~~ 261 (554)
..++++|.+++.+++..+..+...|+++.|+.+++++++.++..++++|.+++.+ +..+ ..+.+.|+++.|+.++.++
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~ 150 (252)
T 4db8_A 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP 150 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CchHHHHHHHCCCHHHHHHHHhCC
Confidence 9999999999998899999999999999999999999999999999999999984 4455 7889999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHH
Q 008781 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~ 341 (554)
++.++..++++|++++.+++.....+.+.|+++.|+.++.++++.++..++++|+|++..++..+..+.+.|+++.|+.+
T Consensus 151 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 230 (252)
T 4db8_A 151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHH
Confidence 99999999999999998888888888999999999999999999999999999999998888888889999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhc
Q 008781 342 LQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 342 l~~~~~~v~~~a~~~L~~L~~ 362 (554)
+.++++.+++.|+++|.||+.
T Consensus 231 l~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 231 QSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TTCSSSHHHHTHHHHHHTTC-
T ss_pred hCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999975
No 30
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=232.09 Aligned_cols=389 Identities=16% Similarity=0.133 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhh-HHHHHH
Q 008781 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH-QQLIVD 155 (554)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~i~~ 155 (554)
......+++.|...|.++..|..+ ..++++.|.++++. . .++..|+-+|.++...+.. ...+.
T Consensus 270 ~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~------------~ir~lAavvL~KL~~~~~~~~~si~- 333 (778)
T 3opb_A 270 LQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--E------------DVQIYSALVLVKTWSFTKLTCINLK- 333 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--G------------GGHHHHHHHHHHHTGGGTCTTCCHH-
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--H------------HHHHHHHHHHHHHhcCCCCCcCcHH-
Confidence 335556666666667677777666 56778999999864 2 7888999999998832221 11111
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc-CChHHHHHhhcC-CCHHHHHHHHHHHHH
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-TDTKVQRAAAGALRT 233 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~L~~ll~~-~~~~v~~~a~~~L~~ 233 (554)
...+.+.++|.+... +-++.|+..|..++. ++..+..++.. +.+..|+.++++ .+..+...++.+|.|
T Consensus 334 -~La~~~~~~L~~~~~--------~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~N 403 (778)
T 3opb_A 334 -QLSEIFINAISRRIV--------PKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMAN 403 (778)
T ss_dssp -HHHHHHHHHTTTCCH--------HHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCc--------cHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 134555566665433 458999999999998 77788888875 559999999985 778899999999999
Q ss_pred hccCCcc--------------------------------------chHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 234 LAFKNDE--------------------------------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 275 (554)
Q Consensus 234 l~~~~~~--------------------------------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 275 (554)
++...+. ++..+.+.|+++.|+.++.++++.++..++++|.|
T Consensus 404 Lt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~n 483 (778)
T 3opb_A 404 LSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYN 483 (778)
T ss_dssp TTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred hcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9974331 34456788999999999999999999999999999
Q ss_pred HhccChhhHHHHHHcCCHHHHHHHhccCChH---HHHHHHHHHHHHhcCCcccHHHHHH---cCCHHHHHHHhCC-CCH-
Q 008781 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSE---SQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQS-PDV- 347 (554)
Q Consensus 276 L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---~~~~a~~~L~nl~~~~~~~~~~~~~---~~~~~~L~~~l~~-~~~- 347 (554)
|+.. +.++..+++.|+++.|+.++.+.... .+..|+.+|.+++...... ..+.. .|++++|+.+|.. +..
T Consensus 484 LS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~ 561 (778)
T 3opb_A 484 ITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVD 561 (778)
T ss_dssp HHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred HcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH-HHcCCCccccchHHHHHHcCCCCCcc
Confidence 9865 88899999999999999999887544 7999999999998433211 11111 3889999999982 221
Q ss_pred ------------HHHHHHHHHHHHHhcCCCc-----chhhhhc-CCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcch-
Q 008781 348 ------------QLREMSAFALGRLAQDMHN-----QAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV- 408 (554)
Q Consensus 348 ------------~v~~~a~~~L~~L~~~~~~-----~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~- 408 (554)
.-+..|+.+|.||+..+++ +..++.. |+++.|.+++.+++..++.+|+++++||+.+++..
T Consensus 562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~ 641 (778)
T 3opb_A 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIA 641 (778)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTG
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 1267999999999988743 6667774 89999999999999999999999999999877764
Q ss_pred hHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcC-CchhhHHHHH
Q 008781 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFID 487 (554)
Q Consensus 409 ~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~ 487 (554)
..+...+.- ...+-++.|+.++..++.++|.+|+++|++++. .+.....+.+
T Consensus 642 ~k~~~~~~~---------------------------~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 642 AKFFNLENP---------------------------QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp GGTSCCSSH---------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred HHHHhhcCc---------------------------hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 344332200 011126889999999999999999999999964 5556566666
Q ss_pred c-CcHHHHHHhhCC--CChhHHHHHHHHHHHHHhhc
Q 008781 488 G-GGLELLLGLLGS--TNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 488 ~-~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~ 520 (554)
. ++++.++.++.+ ++++++..++.+++||+...
T Consensus 695 ~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 5 899999999998 89999999999999999743
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1.4e-25 Score=210.45 Aligned_cols=239 Identities=24% Similarity=0.340 Sum_probs=218.4
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (554)
...+.+.+.|.+.+. +++..|+++|.++...+++.+..+.+.|+++.|+.+++++++.++..++++|.+++.
T Consensus 12 ~~~~~~~~~L~s~~~--------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp CSHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 357889999998877 999999999988766577778888999999999999999999999999999999998
Q ss_pred CCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHH
Q 008781 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (554)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 316 (554)
++++++..+.+.|+++.|+.++.++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..++++|+
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999876665588889999999999999999999999999999
Q ss_pred HHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC-CcchhhhhcCCHHHHHHHhcCCChhHHHHHH
Q 008781 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (554)
Q Consensus 317 nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (554)
+++..++.....+.+.|+++.|+.++.++++.++..++++|+|++... ..+..+.+.|+++.|++++.++++.++..|+
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 999877788888889999999999999999999999999999999654 4456688899999999999999999999999
Q ss_pred HHHHHccc
Q 008781 396 FALYGLAD 403 (554)
Q Consensus 396 ~~L~~l~~ 403 (554)
++|.+|+.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99999975
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-23 Score=215.02 Aligned_cols=381 Identities=15% Similarity=0.110 Sum_probs=292.4
Q ss_pred HHHHHHHHhcc-ChhhHH-HHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCCh
Q 008781 82 RATHVLAELAK-NEEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159 (554)
Q Consensus 82 ~a~~~L~~l~~-~~~~~~-~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l 159 (554)
.++.++..+=- .|+.+. .+...|.++.|.+.+.+... ..+...++..|...|.+..+|..+ ..+++
T Consensus 231 ~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~-----------~~~~~a~L~lLsaACi~~~cR~~I-~~~~~ 298 (778)
T 3opb_A 231 IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQD-----------LQFTKELLRLLSSACIDETMRTYI-TENYL 298 (778)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCC-----------HHHHHHHHHHHHHHCCSHHHHHHH-HHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHhCCcHHHHHH-HHhHH
Confidence 44444544433 455554 55578899999988866433 267788888888888998998888 55677
Q ss_pred HHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCc
Q 008781 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (554)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 239 (554)
+.|..+++.. .++..|+-+|..+..........+ ....+.+.+++.+++.+-+..|+..|.+++. ++
T Consensus 299 ~~L~~~l~~~----------~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~ 365 (778)
T 3opb_A 299 QLLERSLNVE----------DVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KA 365 (778)
T ss_dssp HHHHHHTTSG----------GGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SS
T ss_pred HHHHHHhccH----------HHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CH
Confidence 9999988752 788888888888876333221111 2255777888887777779999999999997 67
Q ss_pred cchHHHHh-cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhccChh-----------------------------------
Q 008781 240 ENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN----------------------------------- 282 (554)
Q Consensus 240 ~~~~~~~~-~~~~~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~----------------------------------- 282 (554)
+.++.+.+ .|+++.|+.++++ .+..+...++.+|.|++.+.+.
T Consensus 366 ~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v 445 (778)
T 3opb_A 366 SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDI 445 (778)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHH
Confidence 77777765 5779999999995 7888999999999999874331
Q ss_pred ---hHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHH---HHHHHHHH
Q 008781 283 ---IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ---LREMSAFA 356 (554)
Q Consensus 283 ---~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~---v~~~a~~~ 356 (554)
++..+.+.|+++.|+.++.+.++.++..++++|.|++ .++.++..+++.|+++.|+.++.+.... ++..|+.+
T Consensus 446 ~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~A 524 (778)
T 3opb_A 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRA 524 (778)
T ss_dssp HHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 3456678899999999999999999999999999997 5689999999999999999999976544 89999999
Q ss_pred HHHHhcCCCcchhhh---hcCCHHHHHHHhcC-CCh-------------hHHHHHHHHHHHcccCCcc-----hhHHHhh
Q 008781 357 LGRLAQDMHNQAGIA---HNGGLVPLLKLLDS-KNG-------------SLQHNAAFALYGLADNEDN-----VADFIRV 414 (554)
Q Consensus 357 L~~L~~~~~~~~~l~---~~~~l~~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~~-----~~~~~~~ 414 (554)
|.+++...+....+. ..|++++|+.+|.. +.. .-+..|+.+|.||+..+++ +..+++.
T Consensus 525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 999986554333221 13889999999983 111 1277899999999988743 3444442
Q ss_pred CccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhh-HHHHH------
Q 008781 415 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFID------ 487 (554)
Q Consensus 415 ~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~------ 487 (554)
.++++.|..+|.+++..+|++|+++++||+.+++.. ..+..
T Consensus 605 --------------------------------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 605 --------------------------------KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQS 652 (778)
T ss_dssp --------------------------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHH
T ss_pred --------------------------------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchh
Confidence 134788899999999999999999999999887753 23322
Q ss_pred cCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 488 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 488 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
.+.++.|+.++.+++.++|+.|+++|.+++...
T Consensus 653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 653 LRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred hccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 224889999999999999999999999997543
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=4.3e-23 Score=187.63 Aligned_cols=200 Identities=26% Similarity=0.371 Sum_probs=184.7
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhh
Q 008781 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (554)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (554)
...+..+.|+.+++++++.++..|+++|.+++..+++.+..+.+.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 34678899999999999999999999999999878888999999999999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 008781 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
+..+.+.|+++.|+.+|.++++.++..|+++|+|++..++.....+.+.|+++.|+.++.++++.++..++++|.|++.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999987788888889999999999999999999999999999999987
Q ss_pred -CCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHccc
Q 008781 364 -MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (554)
Q Consensus 364 -~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (554)
+..+..+.+.|+++.|++++.++++.++..|+++|.+|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 4556678889999999999999999999999999999975
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=8e-23 Score=185.79 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=186.9
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
..|+.+.|..+|++.+. +++..|+++|.+++..++..+..+.+.|+++.|+.+|.++++.++..|+++|.++
T Consensus 10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45788999999988766 9999999999999988889999999999999999999999999999999999999
Q ss_pred ccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHH
Q 008781 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~ 314 (554)
+.+++.++..+.+.|+++.|+.+|.++++.++..++++|+|++.+++.....+.+.|+++.|+.++.+++..++..++++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 98788889999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred HHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 315 L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
|.|++..++..+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999998878888889999999999999999999999999999999975
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=3.6e-22 Score=188.59 Aligned_cols=245 Identities=22% Similarity=0.228 Sum_probs=197.1
Q ss_pred hHHHHHHHHHhhhhccc------hHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHH-hhcCCCCCccccCCCcc
Q 008781 56 LSEVSAQVNVLNTTFSW------LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKPF 128 (554)
Q Consensus 56 ~~~v~~~v~~L~~~~~~------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~-lL~~~~~~~~~~~~~~~ 128 (554)
...++..+.+|.+.... .+.+.+.+..|+..|.+++.+.++...+.+.|++|.|+. +|.+++.
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~---------- 96 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA---------- 96 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH----------
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH----------
Confidence 34456666666553110 023456788999999999999889999999999999999 9998766
Q ss_pred hHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 008781 129 EHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (554)
Q Consensus 129 ~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (554)
.++..|+++|++++ +++++++.+++.|+++.|+.+|++..+. .+++.|+|+|+|++.++++....+...|
T Consensus 97 --~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~-------~v~~~A~~ALsnl~~~~~~~~~~~~~~g 167 (296)
T 1xqr_A 97 --GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRLD 167 (296)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHcCCcHHHHHHHHCC
Confidence 99999999999999 8899999999999999999999864221 8999999999999998888888888899
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
+++.|+.+|+++++.++..|+++|.+++.++++.+..+++.|+++.|+.+|.+++..++..++++|++|+...+......
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999999999998755443333
Q ss_pred HHc--CCHHH---HHHHhccC--ChHHHHHHHHHHHHHh
Q 008781 288 LAA--GALQP---VIGLLSSC--CSESQREAALLLGQFA 319 (554)
Q Consensus 288 ~~~--~~l~~---L~~lL~~~--~~~~~~~a~~~L~nl~ 319 (554)
... .+... -+.-++.. +.++.+.+..++.++.
T Consensus 248 ~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 248 REPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 221 11111 12223322 2455566666666654
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=3.1e-21 Score=182.15 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (554)
+-+..|+..|.+++. +.++...+...|+++.|+. +|.++++.++..|+++|++++.+++..+..+++.|+++.|+.+|
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 677889999999998 5567778889999999999 99999999999999999999998888999999999999999999
Q ss_pred cC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHH
Q 008781 259 RS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (554)
Q Consensus 259 ~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~ 337 (554)
.+ ++..++..|+|+|+|++.+++...+.+...|+++.|+.+|.+++..++..|+|+|++++..+++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 95 58899999999999999988888888999999999999999999999999999999999888889999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhcCCCcchh-hhhc-CCHHH----HHHHhcCC--ChhHHHHHHHHHHHcccC
Q 008781 338 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-IAHN-GGLVP----LLKLLDSK--NGSLQHNAAFALYGLADN 404 (554)
Q Consensus 338 L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~-l~~~-~~l~~----L~~ll~~~--~~~v~~~a~~~L~~l~~~ 404 (554)
|+.+|.+++..+++.++++|++|+........ .... ..+.. -.+-+... +.++...+..++.++...
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999987322111 1111 11222 22333322 357777788888877644
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=170.36 Aligned_cols=196 Identities=21% Similarity=0.276 Sum_probs=172.1
Q ss_pred ChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH
Q 008781 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (554)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (554)
.+|.|+++|.+++. +++++..+++.|.+++ .+++++..+++.|+||.|+++|++.+. ++++
T Consensus 9 ~i~~lV~lL~s~~~----------~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--------~vq~ 70 (233)
T 3tt9_A 9 TLERAVSMLEADHM----------LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--------DVQR 70 (233)
T ss_dssp CHHHHHHTCCSSCC----------CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--------HHHH
T ss_pred cHHHHHHHhCCCCc----------hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58999999998765 2378889999999999 889999999999999999999998765 9999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc---
Q 008781 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--- 259 (554)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--- 259 (554)
.|+++|.||+.++++++..+.+.|++|.|+++|. +++..+++.++.+|++++. .+.++..+.+. +++.|+.++.
T Consensus 71 ~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~ 148 (233)
T 3tt9_A 71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPF 148 (233)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccc
Confidence 9999999999988999999999999999999998 5789999999999999997 67788888764 6899988653
Q ss_pred -------------CCCHHHHHHHHHHHHHHhccChhhHHHHHHc-CCHHHHHHHhccC------ChHHHHHHHHHHHHHh
Q 008781 260 -------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSSC------CSESQREAALLLGQFA 319 (554)
Q Consensus 260 -------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~lL~~~------~~~~~~~a~~~L~nl~ 319 (554)
..+.+++..|..+|.||+..+++.++.+.+. |+++.|+.+++.+ +...++.++.+|.||+
T Consensus 149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 1367999999999999998878888999876 6789999999752 4578999999999997
Q ss_pred c
Q 008781 320 A 320 (554)
Q Consensus 320 ~ 320 (554)
.
T Consensus 229 ~ 229 (233)
T 3tt9_A 229 Y 229 (233)
T ss_dssp C
T ss_pred h
Confidence 4
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=169.38 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=170.5
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHH
Q 008781 250 ALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (554)
Q Consensus 250 ~~~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 327 (554)
.++.++.+|.++++ .++..++++|.+++..++..+..+.+.|+++.|+.+|.++++++++.|+++|.||+..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 48999999998887 8999999999999988888999999999999999999999999999999999999987789999
Q ss_pred HHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc----------------CCChhH
Q 008781 328 HIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD----------------SKNGSL 390 (554)
Q Consensus 328 ~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~----------------~~~~~v 390 (554)
.+.+.|++|.|+.+|. +++..+++.++.+|+||+..+.++..+.+. ++++|+.++. ..+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 578999999999999999988888888764 6999887652 125689
Q ss_pred HHHHHHHHHHcccC-CcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhh------CCHH
Q 008781 391 QHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV------AEKG 463 (554)
Q Consensus 391 ~~~a~~~L~~l~~~-~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~------~~~~ 463 (554)
+.+|+.+|.||+.. +++++.+.+.+|+ ++.|+.+++. .+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gl--------------------------------i~~Lv~~l~~~~~~~~~~~k 215 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGL--------------------------------IDSLVHYVRGTIADYQPDDK 215 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTH--------------------------------HHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCc--------------------------------HHHHHHHHHhhhhcccchhH
Confidence 99999999999874 5788888876543 5666777765 2557
Q ss_pred HHHHHHHHHHhhcCC
Q 008781 464 VQRRVALALAHLCSP 478 (554)
Q Consensus 464 v~~~a~~~L~~l~~~ 478 (554)
.+++++.+|.||+..
T Consensus 216 ~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 216 ATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.76 E-value=1.9e-16 Score=167.12 Aligned_cols=402 Identities=14% Similarity=0.087 Sum_probs=280.6
Q ss_pred hhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHH
Q 008781 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQL 152 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~ 152 (554)
++..++..|+..|..++..-... ......+|.|..++++++. .+|..|+.+|+.++ .+++
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~------------~vr~~a~~~l~~l~~~~~~~---- 237 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQD------------SVRLLAVEACVNIAQLLPQE---- 237 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCH------------HHHTTHHHHHHHHHHHSCHH----
T ss_pred CCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcH------------HHHHHHHHHHHHHHHhCCHH----
Confidence 46678999999999988631111 1224568888888876655 89999999999998 2322
Q ss_pred HHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 008781 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (554)
Q Consensus 153 i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (554)
......++.+..++.+.+. .++..++.+|..++..... .......++.++.+++++++.++..++.+|.
T Consensus 238 ~~~~~~~~~l~~~~~d~~~--------~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSW--------RVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVK 306 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSH--------HHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCH--------HHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 1223467777787765443 8999999999999863221 1223467899999999999999999999999
Q ss_pred HhccCCccc-hHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHH
Q 008781 233 TLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (554)
Q Consensus 233 ~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a 311 (554)
.++..-... ........+++.+..++.++++.+|..++++|+.++..-.. ......+++.+..++.+.+++++..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 998643221 11122345788899999999999999999999998743211 12233578899999999899999999
Q ss_pred HHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHH
Q 008781 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (554)
Q Consensus 312 ~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (554)
+.++..+...... ......++|.+..++.+.++.+|..++.++..++..-... ......++.+..++.++++.++
T Consensus 384 ~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr 458 (588)
T 1b3u_A 384 ISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIR 458 (588)
T ss_dssp HTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHH
T ss_pred HHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHH
Confidence 9998888643211 1123457888899999999999999999999997532211 2223457788889999999999
Q ss_pred HHHHHHHHHcccCCcchhHHHhhCccccccchhh-hhhhhHHHHHHHHHHHHH-----HHhhchHHHHHHHHhhCCHHHH
Q 008781 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEE-----KIHGRVLNHLLYLMRVAEKGVQ 465 (554)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~-~~~~~~~~~~~~~~~l~~-----~~~~~~l~~L~~ll~~~~~~v~ 465 (554)
..|+.++..++...... +.....++.|.+... .....+.....++..+.. .+...+++.|+.+++++++.+|
T Consensus 459 ~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr 536 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVR 536 (588)
T ss_dssp HHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHH
Confidence 99999999987543221 111122222221111 011223333333333332 2345688889999999999999
Q ss_pred HHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 008781 466 RRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (554)
Q Consensus 466 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (554)
..++++++.++..-... +.....++.|..++.+.++++|..|..+|..+.
T Consensus 537 ~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 537 FNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999997542211 223456788888888999999999999998764
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.74 E-value=2.8e-15 Score=151.10 Aligned_cols=327 Identities=14% Similarity=0.152 Sum_probs=249.5
Q ss_pred hhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHH
Q 008781 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (554)
Q Consensus 55 ~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (554)
....|+.++..+.+.- -.+-+..|+..|..+++. ++.. +-.++++.|+..|+.+.. |.++..
T Consensus 19 ~~etI~~L~~Rl~~~t-----l~eDRR~Av~~Lk~~sk~--y~~~-Vg~~~l~~li~~L~~d~~----------D~e~v~ 80 (651)
T 3grl_A 19 EAETIQKLCDRVASST-----LLDDRRNAVRALKSLSKK--YRLE-VGIQAMEHLIHVLQTDRS----------DSEIIG 80 (651)
T ss_dssp HHHHHHHHHHHHHHCC-----SHHHHHHHHHHHHHTTTT--TTTH-HHHHTHHHHHHHHHSCTT----------CHHHHH
T ss_pred hhhHHHHHHHHHhhcc-----chhHHHHHHHHHHHHHHH--hHHH-hhhhhHHHHHHHHhcccc----------cHHHHH
Confidence 3456778888876641 223566899999999873 3333 336679999999998866 448888
Q ss_pred HHHHHHHHhc-CChh-----------------hHHHHH-HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhc
Q 008781 135 GSAFALGLLA-VKPE-----------------HQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE 195 (554)
Q Consensus 135 ~a~~~L~~l~-~~~~-----------------~~~~i~-~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 195 (554)
.++.+|.++. .+++ +.+.+. +.+.++.|+.+|+..+- .++..++.+|..+|..
T Consensus 81 ~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L~~~ 152 (651)
T 3grl_A 81 YALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSLLKQ 152 (651)
T ss_dssp HHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHHHhc
Confidence 9999998765 3221 223333 45789999999987655 9999999999999998
Q ss_pred Cch-hHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC----HHHHHHH
Q 008781 196 NSS-IKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEA 269 (554)
Q Consensus 196 ~~~-~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a 269 (554)
.+. +++.+.. .++++.|+.+|.++.+.+|..++..|.+++.++.+.++.+.-.|+++.|+.++..+. ..+...+
T Consensus 153 r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DC 232 (651)
T 3grl_A 153 LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDC 232 (651)
T ss_dssp SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHH
T ss_pred CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHH
Confidence 877 7777775 599999999999999999999999999999988888888888899999999998654 4789999
Q ss_pred HHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChH------HHHH---HHHHHHHHhcC------CcccHHHHHHcCC
Q 008781 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE------SQRE---AALLLGQFAAT------DSDCKVHIVQRGA 334 (554)
Q Consensus 270 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~------~~~~---a~~~L~nl~~~------~~~~~~~~~~~~~ 334 (554)
+.+|.||...++.++..+.+.|+++.|..++...... .... +..++.-+... ...++..+.+.|+
T Consensus 233 L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~ 312 (651)
T 3grl_A 233 LILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL 312 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence 9999999999999999999999999999999754321 1122 44455556544 2346778899999
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHHhcCCC-cchhhhhcC---------CHHHHHHHhcCC-ChhHHHHHHHHHHHc
Q 008781 335 VRPLIEMLQSP--DVQLREMSAFALGRLAQDMH-NQAGIAHNG---------GLVPLLKLLDSK-NGSLQHNAAFALYGL 401 (554)
Q Consensus 335 ~~~L~~~l~~~--~~~v~~~a~~~L~~L~~~~~-~~~~l~~~~---------~l~~L~~ll~~~-~~~v~~~a~~~L~~l 401 (554)
++.+++++..+ ...++..|+.+++.+.++.. ++..+.... .+..|+.++.+. ...+|.+++.++..+
T Consensus 313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 99999998864 56899999999999987653 455554422 122234445443 478899999999988
Q ss_pred ccCCcc
Q 008781 402 ADNEDN 407 (554)
Q Consensus 402 ~~~~~~ 407 (554)
..+.+.
T Consensus 393 ~~~N~~ 398 (651)
T 3grl_A 393 LYKNQK 398 (651)
T ss_dssp HTTCHH
T ss_pred HhCCHH
Confidence 765543
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.74 E-value=3.8e-16 Score=164.91 Aligned_cols=400 Identities=14% Similarity=0.086 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHhccC-hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHH
Q 008781 78 AAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD 155 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~ 155 (554)
..+..|+..+..++.. +.. ....+++.+..++++++. .+|..++.+|+.++ ..+. ....
T Consensus 141 ~~R~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~------------~VR~~a~~~l~~l~~~~~~---~~~~ 201 (588)
T 1b3u_A 141 TSRTSACGLFSVCYPRVSSA----VKAELRQYFRNLCSDDTP------------MVRRAAASKLGEFAKVLEL---DNVK 201 (588)
T ss_dssp HHHHHHGGGHHHHTTTSCHH----HHHHHHHHHHHHHTCSCH------------HHHHHHHHHHHHHHHTSCH---HHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHHhcH---HhHH
Confidence 3455555555555442 111 112346677777766555 99999999999998 2221 1223
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 235 (554)
...++.+..++.+.+. .++..|+.+|..++...+.. ......++.+..++.++++.+|..++.+|..++
T Consensus 202 ~~l~~~l~~~~~d~~~--------~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQD--------SVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HTHHHHHHHHHTCSCH--------HHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4567888888876654 89999999999998754431 223457888999999999999999999999998
Q ss_pred cCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHHcCCHHHHHHHhccCChHHHHHHHHH
Q 008781 236 FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (554)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~ 314 (554)
..... . .....+++.++.++.++++.+|..++.+|..++..... .........+++.+..++.+.++.++..++++
T Consensus 271 ~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~ 347 (588)
T 1b3u_A 271 KAVGP--E-ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347 (588)
T ss_dssp HHHCH--H-HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTT
T ss_pred HHhCc--c-cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 53111 1 22345789999999999999999999999999764322 11112335678889999999999999999999
Q ss_pred HHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHH
Q 008781 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 394 (554)
Q Consensus 315 L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 394 (554)
|+.++..... ......+++.+..+++++++.+|..++.+|..+....... ......++.+..++.++++.++..+
T Consensus 348 l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~ 422 (588)
T 1b3u_A 348 IMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAI 422 (588)
T ss_dssp GGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHH
Confidence 9998732111 1223457899999999999999999999999987543211 1223567788888899999999999
Q ss_pred HHHHHHcccCCcchhHHHhhCccccccchhh-hhhhhHHHHHHHHHHHHHH-----HhhchHHHHHHHHhhCCHHHHHHH
Q 008781 395 AFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRV 468 (554)
Q Consensus 395 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~-~~~~~~~~~~~~~~~l~~~-----~~~~~l~~L~~ll~~~~~~v~~~a 468 (554)
+.++..++...... +.....++.+..... .....+.....++..+... ....+++.|..++.+++..+|..+
T Consensus 423 ~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a 500 (588)
T 1b3u_A 423 IEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTT 500 (588)
T ss_dssp HHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999987531110 011111122221111 1122334444444443332 234677778777788899999999
Q ss_pred HHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 469 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 469 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
+.+++.++..-... ......++.|..++.++++.+|..++++|..+...
T Consensus 501 ~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 501 LFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 99999996532211 23345789999999999999999999999999874
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=3.4e-15 Score=150.44 Aligned_cols=372 Identities=15% Similarity=0.154 Sum_probs=272.5
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (554)
|+.|+.=+.+... .+=|+.|+..|..++. +++.. +..++++.|+..|++...+. ++.+.+
T Consensus 23 I~~L~~Rl~~~tl-----------~eDRR~Av~~Lk~~sk--~y~~~-Vg~~~l~~li~~L~~d~~D~------e~v~~~ 82 (651)
T 3grl_A 23 IQKLCDRVASSTL-----------LDDRRNAVRALKSLSK--KYRLE-VGIQAMEHLIHVLQTDRSDS------EIIGYA 82 (651)
T ss_dssp HHHHHHHHHHCCS-----------HHHHHHHHHHHHHTTT--TTTTH-HHHHTHHHHHHHHHSCTTCH------HHHHHH
T ss_pred HHHHHHHHhhccc-----------hhHHHHHHHHHHHHHH--HhHHH-hhhhhHHHHHHHHhcccccH------HHHHHH
Confidence 5666666655443 2668899999999982 33333 34667999999999876543 999999
Q ss_pred HHHHHHHhhcCch-----------------hHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCcc-chHHHH
Q 008781 186 ADAITNLAHENSS-----------------IKTR-VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIV 246 (554)
Q Consensus 186 ~~~L~~L~~~~~~-----------------~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~ 246 (554)
+.+|.++...++. +... +.+.+.++.|+.+|++.+..++.+++.+|..++.+++. .++.+.
T Consensus 83 LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il 162 (651)
T 3grl_A 83 LDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIIL 162 (651)
T ss_dssp HHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999987754332 1112 23467899999999999999999999999999987777 677777
Q ss_pred h-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCCh----HHHHHHHHHHHHHhcC
Q 008781 247 E-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQREAALLLGQFAAT 321 (554)
Q Consensus 247 ~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~----~~~~~a~~~L~nl~~~ 321 (554)
. .++++.|+.+|.++.+.+|..++..|.+|+.++++.++.+.-.|+++.|+.++..... .+...++.+|.||...
T Consensus 163 ~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 163 VSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred hCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 4 5999999999999999999999999999999999998888889999999999986443 6788999999999999
Q ss_pred CcccHHHHHHcCCHHHHHHHhCCCC------HHHHHH---HHHHHHHHhcCC-------CcchhhhhcCCHHHHHHHhcC
Q 008781 322 DSDCKVHIVQRGAVRPLIEMLQSPD------VQLREM---SAFALGRLAQDM-------HNQAGIAHNGGLVPLLKLLDS 385 (554)
Q Consensus 322 ~~~~~~~~~~~~~~~~L~~~l~~~~------~~v~~~---a~~~L~~L~~~~-------~~~~~l~~~~~l~~L~~ll~~ 385 (554)
++.++..+.+.|+++.|..++..++ .....+ ++.++.-|+... .++..+.+.|++..|++++..
T Consensus 243 N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~ 322 (651)
T 3grl_A 243 NNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA 322 (651)
T ss_dssp CHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 9999999999999999999997432 122333 455555555432 246678999999999999876
Q ss_pred C--ChhHHHHHHHHHHHcccCCcc-hhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhh-CC
Q 008781 386 K--NGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AE 461 (554)
Q Consensus 386 ~--~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~-~~ 461 (554)
. ...++..|+.+++.+.++... ...|.+..+ +... . ..-++..|+.++.+ ..
T Consensus 323 ~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v-p~~~-----~------------------~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 323 TGVPADILTETINTVSEVIRGCQVNQDYFASVNA-PSNP-----P------------------RPAIVVLLMSMVNERQP 378 (651)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE-SSSS-----C------------------EEHHHHHHHHHTCTTSC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC-CCCC-----C------------------cChHHHHHHHHhccccc
Confidence 5 577899999999998776544 444444321 1100 0 00123334444444 56
Q ss_pred HHHHHHHHHHHHhhcCCch-hhHHHHHc------C----cH---HHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 462 KGVQRRVALALAHLCSPDD-QRTIFIDG------G----GL---ELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 462 ~~v~~~a~~~L~~l~~~~~-~~~~~~~~------~----~l---~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
..+|.+|+.++..+..+++ .+..+... + .+ ..|..-+.+.++----.|+.+|.++..+.+
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~ 452 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENA 452 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCH
Confidence 8999999999999976654 45544433 1 11 123444455677555568888888888654
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.71 E-value=1.8e-16 Score=174.59 Aligned_cols=377 Identities=14% Similarity=0.098 Sum_probs=264.3
Q ss_pred hhHHHHHHHHHHHHHhccC------hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CCh
Q 008781 75 ADRAAAKRATHVLAELAKN------EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP 147 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~------~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~ 147 (554)
.+..+|..|+-.|.+.... ++.+. .+-+.+++.|.+++. .+|..++.+++.++ .+.
T Consensus 60 ~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~-----~ik~~ll~~l~~~~~------------~vr~~~a~~i~~ia~~~~ 122 (852)
T 4fdd_A 60 EDEPTRSLSGLILKNNVKAHFQNFPNGVTD-----FIKSECLNNIGDSSP------------LIRATVGILITTIASKGE 122 (852)
T ss_dssp SCHHHHHHHHHHHHHHTTTSGGGCCHHHHH-----HHHHHHHTTTTCSSH------------HHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHccCCCCHHHHH-----HHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcC
Confidence 4667899999999987652 22222 234566677765544 89999999999998 321
Q ss_pred hhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH----hcCChHHHHHhhcCCCHHH
Q 008781 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR----MEGGIPPLVELLEFTDTKV 223 (554)
Q Consensus 148 ~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~i~~L~~ll~~~~~~v 223 (554)
.. .-.+.++.|+..+.+.+. .+++.++.+|..++...+.....-. ....++.++.+++++++.+
T Consensus 123 ~~----~wp~ll~~L~~~l~~~~~--------~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 190 (852)
T 4fdd_A 123 LQ----NWPDLLPKLCSLLDSEDY--------NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 190 (852)
T ss_dssp TT----TCTTHHHHHHHHHSCSSH--------HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHH
T ss_pred cc----ccHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHH
Confidence 10 123568888888887654 8999999999999975543211000 1235677788888899999
Q ss_pred HHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC
Q 008781 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (554)
Q Consensus 224 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (554)
+..|+++|.++....+....... .++++.+..++.++++.+|..++++|..++...+..-...+ .++++.+..++.+.
T Consensus 191 R~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~ 268 (852)
T 4fdd_A 191 RSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ 268 (852)
T ss_dssp HHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC
Confidence 99999999988754322111111 24678888888899999999999999999876554322212 24778888888888
Q ss_pred ChHHHHHHHHHHHHHhcCCcccHHHHHH---cCCHHHHHHHh-----------CC-----------CCHHHHHHHHHHHH
Q 008781 304 CSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEML-----------QS-----------PDVQLREMSAFALG 358 (554)
Q Consensus 304 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~---~~~~~~L~~~l-----------~~-----------~~~~v~~~a~~~L~ 358 (554)
++.++..|+.++..++... ..+. ... ..+++.++..+ .+ .+..+|..+..+|.
T Consensus 269 ~~~vr~~a~e~l~~l~~~~-~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~ 346 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQP-ICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALD 346 (852)
T ss_dssp SHHHHHHHHHHHHHHTTST-THHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcch-hHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHH
Confidence 8999999999999997432 2222 221 24566666666 23 23457899999999
Q ss_pred HHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHH
Q 008781 359 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (554)
Q Consensus 359 ~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~ 438 (554)
.++...+ ..+. ...++.+..++.++++.++..|++++++++..... . .. .
T Consensus 347 ~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~-~~-~----------------------- 396 (852)
T 4fdd_A 347 VLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--G-MI-P----------------------- 396 (852)
T ss_dssp HHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--H-HG-G-----------------------
T ss_pred HHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--H-HH-H-----------------------
Confidence 9986432 1222 23567777888889999999999999999876432 1 11 0
Q ss_pred HHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchh-hHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 008781 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ-RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (554)
Q Consensus 439 ~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (554)
.-..+++.++.+++++++.||..+++++++++..-.. .....-...++.|+..+.++++.+|..|+++|.+++
T Consensus 397 ------~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 397 ------YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp ------GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1123578899999999999999999999999753211 000112245788888898899999999999999999
Q ss_pred hhc
Q 008781 518 NKA 520 (554)
Q Consensus 518 ~~~ 520 (554)
...
T Consensus 471 ~~~ 473 (852)
T 4fdd_A 471 EEA 473 (852)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.70 E-value=9.6e-16 Score=168.83 Aligned_cols=430 Identities=14% Similarity=0.103 Sum_probs=269.0
Q ss_pred HHHHHHhhhhccchHhhHHHHHHHHHHHHHhccC-hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHH
Q 008781 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (554)
Q Consensus 60 ~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (554)
..++..+...++. .+..++..|+++|..+... +..... .-.+.++.+..++.+++. +++..+++
T Consensus 173 ~~il~~l~~~l~~--~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~------------~vr~~a~~ 237 (852)
T 4fdd_A 173 NIMIPKFLQFFKH--SSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEP------------EVRKNVCR 237 (852)
T ss_dssp HHHHHHHTTTTTC--SSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCH------------HHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCH------------HHHHHHHH
Confidence 3444555554442 3567999999999988763 221110 012457788887776555 99999999
Q ss_pred HHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH--hcCChHHHHHh
Q 008781 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVEL 215 (554)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~i~~L~~l 215 (554)
+|+.++ ..++.-..... +.++.++..+.+.+. +++..|+.++..++... ..+..+. ....++.++..
T Consensus 238 ~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~--------~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~ 307 (852)
T 4fdd_A 238 ALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDE--------NVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNG 307 (852)
T ss_dssp HHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSH--------HHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcH--------HHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHH
Confidence 999999 55443211111 356777777776544 89999999999998732 2222111 11345566666
Q ss_pred h-----------cC-----------CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 008781 216 L-----------EF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI 273 (554)
Q Consensus 216 l-----------~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 273 (554)
+ .+ .+..++..+..+|..++...++ .+. ..+++.+...+.+++..+|..|+++|
T Consensus 308 l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~~l~~~l~~~~~~~R~aa~~al 383 (852)
T 4fdd_A 308 MKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILPLLKELLFHHEWVVKESGILVL 383 (852)
T ss_dssp TSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5 22 1234688899999988863221 122 23577788888889999999999999
Q ss_pred HHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHH
Q 008781 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353 (554)
Q Consensus 274 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a 353 (554)
++++.+...... ..-.++++.++..+.+.++.++..+++++++++...........-.++++.++..+.++++.++..+
T Consensus 384 g~i~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a 462 (852)
T 4fdd_A 384 GAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462 (852)
T ss_dssp HHTTTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999876543222 1224578899999999999999999999999984321110011123567888888988899999999
Q ss_pred HHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc---chhHHHhhCccccccc-------h
Q 008781 354 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED---NVADFIRVGGVQKLQD-------G 423 (554)
Q Consensus 354 ~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~i~~L~~-------~ 423 (554)
+++|.+++......-.-.-.+.++.|+.++...+......+..++..++.... ....+.+ ..++.+.+ .
T Consensus 463 ~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~-~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 463 CSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHH-HHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHH-HHHHHHHHHHHhcccc
Confidence 99999998644332111224567777778776666655556667776653211 1111111 11111111 0
Q ss_pred hhhhhhhHHHHHHHHHHHHHH---HhhchHHHHHHHHhh-----------------CCHHHHHHHHHHHHhhcCC--chh
Q 008781 424 EFIVQATKDCVAKTLKRLEEK---IHGRVLNHLLYLMRV-----------------AEKGVQRRVALALAHLCSP--DDQ 481 (554)
Q Consensus 424 ~~~~~~~~~~~~~~~~~l~~~---~~~~~l~~L~~ll~~-----------------~~~~v~~~a~~~L~~l~~~--~~~ 481 (554)
.........|+....+.+... .-..+++.++..++. ++..++..++.+++.++.. .+.
T Consensus 542 ~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~ 621 (852)
T 4fdd_A 542 DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 621 (852)
T ss_dssp CTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG
T ss_pred cHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhH
Confidence 000111222322222222111 122234444444432 2567888999999999654 334
Q ss_pred hHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 482 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 482 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
...+...+.++.+..++.++++.+|..+..++..++...
T Consensus 622 ~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 622 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp HHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHh
Confidence 444446788999999999999999999999999999754
No 45
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.63 E-value=1.6e-14 Score=147.46 Aligned_cols=380 Identities=12% Similarity=0.043 Sum_probs=250.4
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCCh-hhHH---
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP-EHQQ--- 151 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~--- 151 (554)
|...+..|...|.++..+. ..+.+..|+.++.+.+. ++.+|..|+..|.++.... ....
T Consensus 14 d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~----------~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 14 DRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGN----------SQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTS----------CHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHHHhccccchHHHHHH
Confidence 5568888888888765420 12346677788876533 2389999999999987221 1000
Q ss_pred --HH------HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--CH
Q 008781 152 --LI------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DT 221 (554)
Q Consensus 152 --~i------~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~ 221 (554)
.. ....+-..++..+.+... .+ ..++.++..++....+... -.+.++.|+..+.++ ++
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~--------~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~ 144 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETY--------RP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTE 144 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCS--------SS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCc--------hh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCH
Confidence 00 011223456677766544 55 7788888888864321111 146788999999888 89
Q ss_pred HHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhccChhhH-HHHHHcCCHHHHH
Q 008781 222 KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVI 297 (554)
Q Consensus 222 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~ 297 (554)
.++..++.+|..++... +....... ..+++.++..+.++ ++.+|..|++++.++...-.... ......-+++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999998632 22111111 23678888888877 79999999999999754322110 0011111466666
Q ss_pred HHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC------------
Q 008781 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH------------ 365 (554)
Q Consensus 298 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~------------ 365 (554)
..+.+.+.+++..++.+|..++...+......+..++++.++..+++.++.++..++.++..++....
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77778889999999999999986544321111222677888888888899999999999999875420
Q ss_pred ------cchhhhh---cCCHHHHHHHhcC-------CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhh
Q 008781 366 ------NQAGIAH---NGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 429 (554)
Q Consensus 366 ------~~~~l~~---~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~ 429 (554)
....+.. ...++.+++.+.. .++.++..|+.+|..++..... .+
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~------------------ 363 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI------------------ 363 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH------------------
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH------------------
Confidence 0011111 2244555555532 2356788888888777654321 11
Q ss_pred hHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch-hhHHHHHcCcHHHHHHhhCCCChhHHHH
Q 008781 430 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLD 508 (554)
Q Consensus 430 ~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 508 (554)
-..+++.+...+.+++..+|..++.+++.++.+.. ....-.-...++.|+.++.++++.+|..
T Consensus 364 ----------------~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~ 427 (462)
T 1ibr_B 364 ----------------VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427 (462)
T ss_dssp ----------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 11246777778888999999999999999987543 1100012467899999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 008781 509 GAVALFKLANKAT 521 (554)
Q Consensus 509 a~~~L~~L~~~~~ 521 (554)
|+++|.+++....
T Consensus 428 a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 428 AAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998753
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.61 E-value=1.3e-13 Score=144.68 Aligned_cols=391 Identities=15% Similarity=0.106 Sum_probs=258.2
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (554)
+...+.-+.-.+..++. +++... -+++.+.+-|.++++ .+|..|+++|+++. .++....+
T Consensus 62 ~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~------------~ir~~AL~~L~~i~-~~~~~~~l- 122 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNP------------LIRALAVRTMGCIR-VDKITEYL- 122 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSH------------HHHHHHHHHHHTCC-SGGGHHHH-
T ss_pred CHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCH------------HHHHHHHHHHHcCC-hHHHHHHH-
Confidence 44566666666666666 455432 236677777777665 89999999999987 44443333
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
++.+.+++.+.++ .++..|+.++.+++..+++. +...+.++.+..++.++++.++..|+.+|..+
T Consensus 123 ----~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 123 ----CEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp ----HHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 4678888887665 99999999999999866653 23356789999999999999999999999999
Q ss_pred ccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHH
Q 008781 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~ 314 (554)
+..+++....-...+.+..|+..+.+.++..+...++++..+...++... ..+++.+..++++.++.++.+|+++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 188 SESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp TTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred HhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHH
Confidence 97654331011112346677777778889899999999988865443322 2357788888899999999999999
Q ss_pred HHHHhcC---CcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHH
Q 008781 315 LGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (554)
Q Consensus 315 L~nl~~~---~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (554)
+..+... +++....+ -..+.+.|+.++ ++++.+|..++.+|..++...+.. +.. .+..+. .+.+++..++
T Consensus 263 i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~---~~~-~~~~~~-~~~~d~~~Ir 335 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI---LKQ-EIKVFF-VKYNDPIYVK 335 (591)
T ss_dssp HHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST---TTT-CTTTTS-CCTTSCHHHH
T ss_pred HHHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH---HHH-HHHhhe-eccCChHHHH
Confidence 9998632 23333322 344667777655 478999999999999998643221 111 122222 2224458999
Q ss_pred HHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHH---HhhchHHHHHHHHhhCCHHHHHHH
Q 008781 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK---IHGRVLNHLLYLMRVAEKGVQRRV 468 (554)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~l~~L~~ll~~~~~~v~~~a 468 (554)
..++.++..++.. .+...++.. ..+.+.+. ....+..+..++..+... ....+++.|+.++......++..+
T Consensus 336 ~~al~~L~~l~~~-~nv~~iv~~-L~~~l~~~---d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~ 410 (591)
T 2vgl_B 336 LEKLDIMIRLASQ-ANIAQVLAE-LKEYATEV---DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEA 410 (591)
T ss_dssp HHHHHHHHHTCCS-STHHHHHHH-HHHHTTSS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCCh-hhHHHHHHH-HHHHHhcC---CHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHH
Confidence 9999999998854 344433331 00001010 011122223333333322 235577888888888888888888
Q ss_pred HHHHHhhcCCchhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcC
Q 008781 469 ALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 469 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+.++..+...... ....+++.|...+. ..++.++..++|+|...+....
T Consensus 411 i~~l~~ii~~~p~----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~ 460 (591)
T 2vgl_B 411 IVVIRDIFRKYPN----KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460 (591)
T ss_dssp HHHHHHHHHHSCS----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHHHHHHCcc----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHccccccc
Confidence 8888777432111 13567788888876 4567788888888877765543
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.60 E-value=2e-13 Score=129.40 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=198.5
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (554)
...+.++.|+..|.+++. .++..|+++|.++.. .+.++.|+.++.++++.++..++++|..
T Consensus 20 ~~~~~i~~L~~~L~~~~~--------~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNS--------LKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp HHTSCHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHcCCH--------HHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345679999999987765 899999999999862 2356889999999999999999999999
Q ss_pred hccCCccchHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHH
Q 008781 234 LAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (554)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~ 312 (554)
+... +.... .+++.|. .++.++++.+|..++++|+++....+... ..+++.|..++.++++.++..++
T Consensus 81 l~~~-~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 81 IKIC-KKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp SCCC-TTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hccc-cccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHH
Confidence 8742 22111 1234444 24578899999999999999975433221 23578899999999999999999
Q ss_pred HHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHH
Q 008781 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392 (554)
Q Consensus 313 ~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 392 (554)
++|+++.. .+.++.|+.++.++++.+|..++++|+.+.... ...++.|..++.++++.++.
T Consensus 150 ~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~ 210 (280)
T 1oyz_A 150 FAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRI 210 (280)
T ss_dssp HHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHH
Confidence 99998752 247899999999999999999999999985321 23578899999999999999
Q ss_pred HHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHH
Q 008781 393 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 472 (554)
Q Consensus 393 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 472 (554)
.++.+|.++.. +. .++.|+..+.+++ ++..++.+|
T Consensus 211 ~A~~aL~~~~~-~~------------------------------------------~~~~L~~~l~d~~--vr~~a~~aL 245 (280)
T 1oyz_A 211 EAIIGLSYRKD-KR------------------------------------------VLSVLCDELKKNT--VYDDIIEAA 245 (280)
T ss_dssp HHHHHHHHTTC-GG------------------------------------------GHHHHHHHHTSSS--CCHHHHHHH
T ss_pred HHHHHHHHhCC-Hh------------------------------------------hHHHHHHHhcCcc--HHHHHHHHH
Confidence 99999999862 11 2677778887654 889999999
Q ss_pred HhhcCCchhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHH
Q 008781 473 AHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALF 514 (554)
Q Consensus 473 ~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~ 514 (554)
+.+.. ...++.|..++. +.++++...+..+|.
T Consensus 246 ~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 246 GELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 99854 246788999886 466777777777664
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.57 E-value=4.3e-13 Score=127.12 Aligned_cols=230 Identities=15% Similarity=0.077 Sum_probs=182.0
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhh
Q 008781 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (554)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (554)
.....++.|+..|.++++.++..|+++|.++.. .+.++.|+.++.++++.+|..++++|+.+.......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345788999999999999999999999999862 235788999999999999999999999985332211
Q ss_pred HHHHHHcCCHHHHH-HHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 284 KKEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 284 ~~~~~~~~~l~~L~-~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
. .+++.+. .++.+.++.++..++++|+++....+... ...++.|+..+.++++.+|..++++|+++..
T Consensus 89 -~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 -D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp -H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred -h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 1 1334444 24567889999999999999974433222 2357889999999999999999999998753
Q ss_pred CCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHH
Q 008781 363 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 442 (554)
Q Consensus 363 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~ 442 (554)
...++.|+.++.++++.++..++++|..+....+
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~------------------------------------ 191 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS------------------------------------ 191 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH------------------------------------
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH------------------------------------
Confidence 2478999999999999999999999998742211
Q ss_pred HHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 443 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 443 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
.+++.|+.++.++++.+|..++++|+++. ....++.|..++.+++ ++..|+.+|..+..
T Consensus 192 -----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 192 -----DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp -----HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 13678888899999999999999999986 2346788888887644 88999999998865
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.56 E-value=3.5e-13 Score=148.90 Aligned_cols=431 Identities=13% Similarity=0.105 Sum_probs=266.4
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhH-HHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~-~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
++.++..+...+...+.+..++..|+++|..+.. -...- ........++.|...+.+.+. +++..+
T Consensus 177 ~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~------------~~r~~a 244 (861)
T 2bpt_A 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI------------EVQAAA 244 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH------------HHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH------------HHHHHH
Confidence 4445555544444332256689999999988753 11110 000011246666666655544 999999
Q ss_pred HHHHHHhc-CChh-hHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCch----------------
Q 008781 137 AFALGLLA-VKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS---------------- 198 (554)
Q Consensus 137 ~~~L~~l~-~~~~-~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~---------------- 198 (554)
+.+|..++ ..++ ....+ ....++.+...+.+.+. +++..++.++..++.....
T Consensus 245 ~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~--------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (861)
T 2bpt_A 245 FGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPND--------KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY 315 (861)
T ss_dssp HHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhH
Confidence 99999998 3332 22222 11445556666655443 8999999999998863211
Q ss_pred -hHHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHH
Q 008781 199 -IKTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAV 270 (554)
Q Consensus 199 -~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 270 (554)
.... .-...++.++..+.. ++..++..+..+|..++...+. .+. ..+++.+...+.+.+..+|..++
T Consensus 316 ~~~~~-~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~ 390 (861)
T 2bpt_A 316 NFALS-SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp CHHHH-HHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHH
Confidence 0011 114467778877764 2357899999999998863221 111 13566777778888999999999
Q ss_pred HHHHHHhccCh-hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccH-HHHHHcCCHHHHHHHhCCCCHH
Q 008781 271 GVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQ 348 (554)
Q Consensus 271 ~~L~~L~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~~~~L~~~l~~~~~~ 348 (554)
.+++.++.+.. ......+ ..+++.++..+.+.++.++..+++++++++....... ..-.-..+++.++..+.++ +.
T Consensus 391 ~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~ 468 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PK 468 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HH
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hH
Confidence 99999986542 2222222 2478888999999999999999999999974321100 0001123577888888775 89
Q ss_pred HHHHHHHHHHHHhcCCCc--chhh--hhcCCHHHHHHHhcCCC--hhHHHHHHHHHHHcccCCcc-hhHHHhhCcccccc
Q 008781 349 LREMSAFALGRLAQDMHN--QAGI--AHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQ 421 (554)
Q Consensus 349 v~~~a~~~L~~L~~~~~~--~~~l--~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~ 421 (554)
++..++++|.+++..... ...+ .-...++.|++++.+.+ +.++..++.++..++..... ....+. ..++.++
T Consensus 469 v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~ 547 (861)
T 2bpt_A 469 VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVM 547 (861)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHH
Confidence 999999999999864221 1111 11345677778887533 78999999999998754332 111111 1122222
Q ss_pred chhhh----------------hhhhHHHHHHHHHHHHHHH-------hhchHHHHHHHHhhCCH-HHHHHHHHHHHhhcC
Q 008781 422 DGEFI----------------VQATKDCVAKTLKRLEEKI-------HGRVLNHLLYLMRVAEK-GVQRRVALALAHLCS 477 (554)
Q Consensus 422 ~~~~~----------------~~~~~~~~~~~~~~l~~~~-------~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~ 477 (554)
+.... ....+..+..++..+.... ...+++.++..++..+. .++..++.+++.++.
T Consensus 548 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~ 627 (861)
T 2bpt_A 548 DKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA 627 (861)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHH
Confidence 11110 1111222333333333221 33467778888888777 899999999999864
Q ss_pred Cch--hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 478 PDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 478 ~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
... ....+ ...++.|...+.++++.++..+..++..++...
T Consensus 628 ~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 628 SLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 422 22222 236888888888888899999999999888754
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.55 E-value=1.9e-13 Score=143.47 Aligned_cols=389 Identities=16% Similarity=0.126 Sum_probs=261.1
Q ss_pred hhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHH
Q 008781 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i 153 (554)
.++.++..|+++|+++. +++....+ ++.+.++|.+.++ .||..|+.++++++ .+++..
T Consensus 98 ~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~------------~VRk~A~~al~~i~~~~p~~~--- 156 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDP------------YVRKTAAVCVAKLHDINAQMV--- 156 (591)
T ss_dssp SSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCH------------HHHHHHHHHHHHHHHSSCCCH---
T ss_pred CCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCCh------------HHHHHHHHHHHHHHhhChhhc---
Confidence 46668888888888875 44444443 6788899987665 99999999999999 666542
Q ss_pred HHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 008781 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (554)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (554)
.+.+.++.+..+|.+.+. .++..|+.+|..++..++.....-...+.+..|+..+.+.++-.+...+.++..
T Consensus 157 ~~~~~~~~l~~lL~d~d~--------~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~ 228 (591)
T 2vgl_B 157 EDQGFLDSLRDLIADSNP--------MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSN 228 (591)
T ss_dssp HHHHHHHHHHHTTSCSCH--------HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 234678899999987665 999999999999998665331000112235667777777888888888888888
Q ss_pred hccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcc---ChhhHHHHHHcCCHHHHHHHhccCChHHHHH
Q 008781 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (554)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~ 310 (554)
++..++... ..+++.+..++++.++.|+..|++++..+... +++..+.+ ...+.+.|+.++. +++.++..
T Consensus 229 l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~ 301 (591)
T 2vgl_B 229 YNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYV 301 (591)
T ss_dssp SCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHH
T ss_pred hCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHH
Confidence 874322221 24577888889999999999999999998632 23332322 2346677776664 78899999
Q ss_pred HHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhH
Q 008781 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 390 (554)
Q Consensus 311 a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 390 (554)
++.+|..+....++... . .+..+. .+.+++..+|..++++|.+++... +-. ..++.|..++.+.+.++
T Consensus 302 aL~~l~~i~~~~p~~~~----~-~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~-nv~-----~iv~~L~~~l~~~d~~~ 369 (591)
T 2vgl_B 302 ALRNINLIVQKRPEILK----Q-EIKVFF-VKYNDPIYVKLEKLDIMIRLASQA-NIA-----QVLAELKEYATEVDVDF 369 (591)
T ss_dssp HHHHHHHHHHHCCSTTT----T-CTTTTS-CCTTSCHHHHHHHHHHHHHTCCSS-THH-----HHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHhChHHHH----H-HHHhhe-eccCChHHHHHHHHHHHHHHCChh-hHH-----HHHHHHHHHHhcCCHHH
Confidence 99999999865443211 1 111221 122445889999999999987543 221 24566778888889999
Q ss_pred HHHHHHHHHHcccCCcc-hhHHHhhCccccccchhhh-hh-hhHHHHHHHHHHHHHH---HhhchHHHHHHHHhh-CCHH
Q 008781 391 QHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFI-VQ-ATKDCVAKTLKRLEEK---IHGRVLNHLLYLMRV-AEKG 463 (554)
Q Consensus 391 ~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~~~~~-~~-~~~~~~~~~~~~l~~~---~~~~~l~~L~~ll~~-~~~~ 463 (554)
+..++++++.++..... ... .++.|++.... .. ...+. ...+..+-.. ....++..|...+.+ .++.
T Consensus 370 r~~~v~aI~~la~~~~~~~~~-----~v~~Ll~ll~~~~~~v~~e~-i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~ 443 (591)
T 2vgl_B 370 VRKAVRAIGRCAIKVEQSAER-----CVSTLLDLIQTKVNYVVQEA-IVVIRDIFRKYPNKYESIIATLCENLDSLDEPD 443 (591)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHHHTCCHHHHHHH-HHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHH
T ss_pred HHHHHHHHHHHHHhChhHHHH-----HHHHHHHHHcccchHHHHHH-HHHHHHHHHHCcchHHHHHHHHHHHHHhccCHH
Confidence 99999999999875431 122 22222221110 00 11111 1122222221 134577888888864 6789
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCc
Q 008781 464 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 464 v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
++..++|+|+..+..-... ...+..+..-+...++.+|..+..++..+..+.+.
T Consensus 444 ~~~~~~wilGey~~~~~~~-----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 444 ARAAMIWIVGEYAERIDNA-----DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HHHHHHHHHHTTCTTCTTH-----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcccccccCH-----HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 9999999999997664431 23455555545567889999999999999987543
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.55 E-value=2.1e-13 Score=150.98 Aligned_cols=434 Identities=16% Similarity=0.121 Sum_probs=262.2
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccC-hhhH-HHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (554)
.++.++..+...+...+.+..++..|+++|..+... +... .......+++.+...+.+.+. +++..
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~------------~vr~~ 236 (876)
T 1qgr_A 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVA 236 (876)
T ss_dssp GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH------------HHHHH
Confidence 345555555555543322456888999999987752 2111 001111246667776654433 89999
Q ss_pred HHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchh---------------
Q 008781 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI--------------- 199 (554)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~--------------- 199 (554)
++.+|..++ ..+..-...+....++.++..+.+.+. .++..++.++.+++......
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 308 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE 308 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCcc
Confidence 999999999 444332222333567777777665444 88999999999888632100
Q ss_pred ---HHHH--HhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHH
Q 008781 200 ---KTRV--RMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (554)
Q Consensus 200 ---~~~~--~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 267 (554)
.... .....++.++..+.. ++..++..+..+|..++....+ .+. ..+++.+...+.+++..+|.
T Consensus 309 ~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~ 384 (876)
T 1qgr_A 309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHH
T ss_pred chhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHH
Confidence 0000 012345667777642 3457899999999988863221 122 23566777788889999999
Q ss_pred HHHHHHHHHhccCh-hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccH-HHHHHcCCHHHHHHHhCCC
Q 008781 268 EAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSP 345 (554)
Q Consensus 268 ~a~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~~~~L~~~l~~~ 345 (554)
.++++|+.++.+.. ..... .-..+++.++..+.+.++.++..|+++|++++...+... ..-.-..+++.++..+.++
T Consensus 385 ~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~ 463 (876)
T 1qgr_A 385 AAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE 463 (876)
T ss_dssp HHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC
Confidence 99999999987543 22222 224578899999999999999999999999985433210 0001124567788888774
Q ss_pred CHHHHHHHHHHHHHHhcCCC------------cchhh--hhcCCHHHHHHHhcCC---ChhHHHHHHHHHHHcccCCcc-
Q 008781 346 DVQLREMSAFALGRLAQDMH------------NQAGI--AHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNEDN- 407 (554)
Q Consensus 346 ~~~v~~~a~~~L~~L~~~~~------------~~~~l--~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~- 407 (554)
+.++..++++|.+++.... ....+ .-...++.|..++... +..++..+..++..++.....
T Consensus 464 -~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 542 (876)
T 1qgr_A 464 -PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD 542 (876)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST
T ss_pred -HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh
Confidence 8899999999999985421 00111 1123566677777653 357888888888888654321
Q ss_pred hhHHHhhCccccccchhhh----------------hhhhHHHHHHHHHHHHHH--------HhhchHHHHHHHHhhCC--
Q 008781 408 VADFIRVGGVQKLQDGEFI----------------VQATKDCVAKTLKRLEEK--------IHGRVLNHLLYLMRVAE-- 461 (554)
Q Consensus 408 ~~~~~~~~~i~~L~~~~~~----------------~~~~~~~~~~~~~~l~~~--------~~~~~l~~L~~ll~~~~-- 461 (554)
...++. ..++.+++.... ....+..+...+..+... .-..+++.++.++++.+
T Consensus 543 ~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 621 (876)
T 1qgr_A 543 CYPAVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGS 621 (876)
T ss_dssp THHHHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----C
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCC
Confidence 111111 111111111000 011122222333322211 12446777777777654
Q ss_pred HHHHHHHHHHHHhhcCCch--hhHHHHHcCcHHHHHHhhCCC-ChhHHHHHHHHHHHHHhhc
Q 008781 462 KGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 462 ~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~ 520 (554)
+.++..++.++..++.... ....+ ...++.|...+.+. ++.++..|..++..++...
T Consensus 622 ~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 622 GGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH
Confidence 4789999999999965322 22211 13577888888765 8899999999999998754
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.53 E-value=2.2e-13 Score=150.48 Aligned_cols=429 Identities=11% Similarity=0.092 Sum_probs=264.7
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccCh--hhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
++.+++.+...+.. .+...+..|+.+|..++.+. +....... .+++.|++.+.+++. .+|..+
T Consensus 367 ~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~------------~vr~~a 431 (861)
T 2bpt_A 367 LEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSL------------QVKETT 431 (861)
T ss_dssp HHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCH------------HHHHHH
T ss_pred HHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcH------------HHHHHH
Confidence 34555555554432 34568889999999999742 33222222 478888888877655 999999
Q ss_pred HHHHHHhcCC--hhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc-----hhHHHHHhcCCh
Q 008781 137 AFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGI 209 (554)
Q Consensus 137 ~~~L~~l~~~--~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~~i 209 (554)
+++|+.++.. +.....-.-...++.++..+.+. . .++..++++|.+++.... .....+ ..++
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~--------~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il 500 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P--------KVATNCSWTIINLVEQLAEATPSPIYNFY--PALV 500 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H--------HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHH
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h--------HHHHHHHHHHHHHHHhcccccchhhHHHH--HHHH
Confidence 9999999821 11000000113466777777653 2 899999999999987421 111111 3456
Q ss_pred HHHHHhhcCCC--HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC---------------CCHHHHHHHHHH
Q 008781 210 PPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGV 272 (554)
Q Consensus 210 ~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---------------~~~~v~~~a~~~ 272 (554)
+.++..+.+.+ +.++..++.++..++...+........ .+++.++..+.. ....++..++.+
T Consensus 501 ~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 579 (861)
T 2bpt_A 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579 (861)
T ss_dssp HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHH
Confidence 78888887543 789999999999998754433222222 356666666542 134678899999
Q ss_pred HHHHhccChhhHHHHHHcCCHHHHHHHhccCCh-HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHH
Q 008781 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (554)
Q Consensus 273 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~ 351 (554)
|.+++.......... -..+++.+..++.+.+. .++..++.+++.++........... ..+++.+...+.++++.++.
T Consensus 580 l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~ 657 (861)
T 2bpt_A 580 LAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSI 657 (861)
T ss_dssp HHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHH
Confidence 999976543311111 12467778888887766 8899999999998754322222222 33788889889888889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCC--hhHHHHHHHHHHHcccCC-cchhHHHhhCccccccchhh---
Q 008781 352 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEF--- 425 (554)
Q Consensus 352 ~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~~~~--- 425 (554)
.++.++..++......-.-.-...++.+.+.+.+.+ ..++..++.++..++... +....++. ..++.+.....
T Consensus 658 ~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 658 TAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN-DIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhcCC
Confidence 999999999865433211122345677777777654 889999999999987642 22211111 11222221110
Q ss_pred ---------hhhhhHHHHHHHHHHHHHHH----------hhchHHHHHHHHhhC----CHHHHHHHHHHHHhhcC---Cc
Q 008781 426 ---------IVQATKDCVAKTLKRLEEKI----------HGRVLNHLLYLMRVA----EKGVQRRVALALAHLCS---PD 479 (554)
Q Consensus 426 ---------~~~~~~~~~~~~~~~l~~~~----------~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~---~~ 479 (554)
.....+....+++..+.... -..+++.+...+.+. +..++..|+.+++.|+. ++
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 00112222333333222111 123444444555442 78999999999999954 33
Q ss_pred hhhHHHHHcCcHHHHHHhhC---CCChhHHHHHHHHHHHHHh
Q 008781 480 DQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 480 ~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~L~~ 518 (554)
+... +.....++.|++.+. +.+..++..|.|++..+.+
T Consensus 817 ~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 817 SIKQ-FYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp TTGG-GTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred hHHH-HHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 3222 223245777777766 5667899999999998875
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.52 E-value=3.8e-12 Score=134.07 Aligned_cols=384 Identities=16% Similarity=0.121 Sum_probs=236.6
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~ 154 (554)
++.++..|+++|+++.. ++... .+++.+.++|.+.++ .||..|+.+++++. .+|+..
T Consensus 120 n~~vr~lAL~~L~~i~~-~~~~~-----~l~~~l~~~L~~~~~------------~VRk~A~~al~~l~~~~p~~v---- 177 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS-SEMCR-----DLAGEVEKLLKTSNS------------YLRKKAALCAVHVIRKVPELM---- 177 (618)
T ss_dssp SSHHHHHHHHHHHHHCC-HHHHH-----HHHHHHHHHHHSCCH------------HHHHHHHHHHHHHHHHCGGGG----
T ss_pred CHhHHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHChHHH----
Confidence 45678888888888874 43332 347888889988766 99999999999999 666543
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC---------------C
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF---------------T 219 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~ 219 (554)
.+.++.+..++.+.+. .++..|+.+|..++..+++....+ ...++.++.+|.+ .
T Consensus 178 -~~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 178 -EMFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp -GGGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred -HHHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 2567778888877665 899999999999997655432222 3678888877753 4
Q ss_pred CHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCH
Q 008781 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (554)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 293 (554)
++-.+...+.+|..++..++... ....+.|..++. +.+..+...|++++..+.. .+... ..++
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~-----~~a~ 315 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLR-----VLAI 315 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHH-----HHHH
T ss_pred CChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHH-----HHHH
Confidence 78888889999999886443322 123444444432 2345777888888877643 22211 1345
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhc
Q 008781 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 373 (554)
Q Consensus 294 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~ 373 (554)
..|..++.+.++.++..|+.+|..++...+. ++ ......++..+.+++..+|..++.+|..++..... ..
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv-~~---- 385 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI-RG---- 385 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST-HH----
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH-HH----
Confidence 6777777777778888888888887643222 22 22456677777777788888888888888754322 22
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHcccC-CcchhHHH-------hhCc--cc-----cccchhhhhhhhHH------
Q 008781 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFI-------RVGG--VQ-----KLQDGEFIVQATKD------ 432 (554)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~-------~~~~--i~-----~L~~~~~~~~~~~~------ 432 (554)
.+..|...+.+.+.+++..+..+++.++.. ++.....+ +.++ +. .+.+-....+....
T Consensus 386 -iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L 464 (618)
T 1w63_A 386 -MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRL 464 (618)
T ss_dssp -HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHH
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 245677777777777888888887777654 22222211 1111 00 00000000000000
Q ss_pred ---------------HHHHHHHHHHHHHh--------------hchHHHHHHHHh--hCCHHHHHHHHHHHHhhcCC-ch
Q 008781 433 ---------------CVAKTLKRLEEKIH--------------GRVLNHLLYLMR--VAEKGVQRRVALALAHLCSP-DD 480 (554)
Q Consensus 433 ---------------~~~~~~~~l~~~~~--------------~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~~-~~ 480 (554)
.+...+........ ..+++.|..+++ ..++.+|..++.++..+... ++
T Consensus 465 ~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~ 544 (618)
T 1w63_A 465 YKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC 544 (618)
T ss_dssp HHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc
Confidence 01111111111111 124455555554 46889999999999888543 33
Q ss_pred hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 481 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 481 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
....+ ...|..+..+.++++|.+|...+.-+..+
T Consensus 545 ~~~~l-----~~~L~~~~~~~d~evrdRA~~y~~ll~~~ 578 (618)
T 1w63_A 545 TVNRI-----KKVVSIYGSSIDVELQQRAVEYNALFKKY 578 (618)
T ss_dssp CHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHcCc
Confidence 32222 23445556688999999999987777653
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.50 E-value=1.3e-11 Score=130.05 Aligned_cols=379 Identities=13% Similarity=0.112 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 008781 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (554)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g 157 (554)
.+.-+--.+..++. +++.... ++..|.+-|.++++ .++..|+++|+++.. ++.. ..
T Consensus 86 ~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~------------~vr~lAL~~L~~i~~-~~~~-----~~ 142 (618)
T 1w63_A 86 DKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQ------------FVQGLALCTLGCMGS-SEMC-----RD 142 (618)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSS------------HHHHHHHHHHHHHCC-HHHH-----HH
T ss_pred HHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCH------------hHHHHHHHHHHhcCC-HHHH-----HH
Confidence 34444445556665 4443222 36778888888777 999999999999984 3322 24
Q ss_pred ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 008781 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (554)
.++.+.+++.+.++ .++..|+.++.+++..+++.. .+.++.+..++.+.++.++..|+.+|..++..
T Consensus 143 l~~~l~~~L~~~~~--------~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 143 LAGEVEKLLKTSNS--------YLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHHSCCH--------HHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 56888899988766 999999999999998777643 36788889999999999999999999999975
Q ss_pred CccchHHHHhcCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc
Q 008781 238 NDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~---------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~ 302 (554)
+++....+. ..++.++.+|.+ .++-.+..++++|..++..++... ....+.|..++..
T Consensus 210 ~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~ 282 (618)
T 1w63_A 210 SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATN 282 (618)
T ss_dssp HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHT
T ss_pred ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhc
Confidence 443322332 568888877653 478899999999999987655432 2355666666532
Q ss_pred ------CChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCH
Q 008781 303 ------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 376 (554)
Q Consensus 303 ------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l 376 (554)
.+..+..+++.++..+.. .+. +. ..++..|..++.++++.+|..|+.+|..++...+ .++ ....
T Consensus 283 ~~~~~~~~~aV~~ea~~~i~~l~~-~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~ 352 (618)
T 1w63_A 283 TETSKNVGNAILYETVLTIMDIKS-ESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHR 352 (618)
T ss_dssp SCCSSTHHHHHHHHHHHHHHHSCC-CHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGH
T ss_pred cccccchHHHHHHHHHHHHHhcCC-CHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHH
Confidence 235788899999988743 221 11 2356788888999999999999999999986421 222 2356
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHH---hhchHHHH
Q 008781 377 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI---HGRVLNHL 453 (554)
Q Consensus 377 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~l~~L 453 (554)
..++.++.+++..++..++.+|..++... +...+++. .++.+.+ .....+.-+...+.++...+ ....++.|
T Consensus 353 ~~i~~~l~d~d~~Ir~~alelL~~l~~~~-nv~~iv~e-L~~~l~~---~d~e~r~~~v~~I~~la~k~~~~~~~~v~~l 427 (618)
T 1w63_A 353 STIVDCLKDLDVSIKRRAMELSFALVNGN-NIRGMMKE-LLYFLDS---CEPEFKADCASGIFLAAEKYAPSKRWHIDTI 427 (618)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHCCSS-STHHHHHH-HHHHHHH---CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHcccc-cHHHHHHH-HHHHHHh---CCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 78899999999999999999999998653 33333221 0000000 00111222223333333322 22245666
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhcC-CchhhHHHHHcCcHHHHHHhhCC--CChhHHHHHHHHHHHHHhhc
Q 008781 454 LYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 454 ~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~ 520 (554)
+.+++.....++..++..+..+.. .++.+.. ++..|..++.+ .+..+...++|+|...+...
T Consensus 428 l~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i 492 (618)
T 1w63_A 428 MRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLL 492 (618)
T ss_dssp HHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHhcChhHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHh
Confidence 666666555555556666666532 2332222 35566666663 33455556777777766554
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.49 E-value=3.7e-12 Score=140.90 Aligned_cols=400 Identities=12% Similarity=0.070 Sum_probs=257.8
Q ss_pred HHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhH-----HHHH------hCCChHHHHHhhcCCCCCccccCCCc
Q 008781 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVV-----NWIV------EGGAVPALVKHLQAPPTSEADRNLKP 127 (554)
Q Consensus 60 ~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~-----~~~~------~~g~v~~Lv~lL~~~~~~~~~~~~~~ 127 (554)
+.++..|...+...+.+..++..|+..|.+... ..+.+ .... ...+-+.+++.|.+.+.
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~--------- 104 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY--------- 104 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS---------
T ss_pred hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcH---------
Confidence 334444444333332356688999999998654 21110 1000 11123347777776655
Q ss_pred chHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhcc--ccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHh
Q 008781 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (554)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 205 (554)
.+ ..++.+++.++....... .-...++.++..+.+. +. .++..++.++..++.........-..
T Consensus 105 ---~~-~~~~~~l~~i~~~~~~~~--~w~~ll~~l~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~~~ 170 (876)
T 1qgr_A 105 ---RP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQDKS 170 (876)
T ss_dssp ---SS-CHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred ---HH-HHHHHHHHHHHHhhCccc--ccHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhcCHhhHHhHH
Confidence 55 688888888872210000 0134578888888765 33 89999999999999743211000011
Q ss_pred cCChHHHHHhhcCC--CHHHHHHHHHHHHHhccCCccch-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChh
Q 008781 206 EGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (554)
Q Consensus 206 ~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 282 (554)
...++.+...+.++ +..++..++.++..++..-..+. .......+++.+...+.+++.++|..++.+|..++...+.
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 23456677777776 68999999999999875322110 0111112567777777888999999999999999876554
Q ss_pred hHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcc------------------cHHHH--HHcCCHHHHHHHh
Q 008781 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD------------------CKVHI--VQRGAVRPLIEML 342 (554)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~------------------~~~~~--~~~~~~~~L~~~l 342 (554)
.-...+...+++.+...+.+.++.++..++..+.+++..... ..... .-..+++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 333333346788888888888889999999988888743100 00000 1133567777777
Q ss_pred C-------CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhC
Q 008781 343 Q-------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 415 (554)
Q Consensus 343 ~-------~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 415 (554)
. +.++.+|..+..+|..++..... .+. ...++.+...+.++++.++..+++++..++...... .+..
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~-- 404 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKP-- 404 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHH--
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-HHHH--
Confidence 5 23567999999999999864321 222 235566667778889999999999999998654210 0000
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchh----hHHHHHcCcH
Q 008781 416 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ----RTIFIDGGGL 491 (554)
Q Consensus 416 ~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~l 491 (554)
.-..+++.++..+.++++.+|..|++++++++..-.. ... -...+
T Consensus 405 -----------------------------~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l 453 (876)
T 1qgr_A 405 -----------------------------LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLL 453 (876)
T ss_dssp -----------------------------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHH
T ss_pred -----------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHH
Confidence 1123578899999999999999999999999654211 111 12356
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 492 ELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 492 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+.|...+.+. +.++..++++|.+++...
T Consensus 454 ~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 454 QCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 7788888764 899999999999999764
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.48 E-value=6.6e-13 Score=135.54 Aligned_cols=343 Identities=11% Similarity=0.076 Sum_probs=228.0
Q ss_pred hhHHHHHHHHHHHHHhccCh--hhHH----HH------HhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHH
Q 008781 75 ADRAAAKRATHVLAELAKNE--EVVN----WI------VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~--~~~~----~~------~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (554)
.+..++..|+..|.++.... .... .. ....+-..|+..|.+.+. .+ ..++.+++.
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~------------~v-~~~~~~i~~ 115 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY------------RP-SSASQCVAG 115 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS------------SS-CSHHHHHHH
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc------------hh-hHHHHHHHH
Confidence 35678999999999986521 0000 00 112234567777777665 56 678889998
Q ss_pred hc-C-ChhhHHHHHHcCChHHHHHHHhcc--ccCccccchhHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHHHHhhc
Q 008781 143 LA-V-KPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLE 217 (554)
Q Consensus 143 l~-~-~~~~~~~i~~~g~l~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~L~~ll~ 217 (554)
++ . .++. .-.+.++.|+..+.+. +. .++..++.+|..++... +..-... ....++.++..+.
T Consensus 116 ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~ 182 (462)
T 1ibr_B 116 IACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMR 182 (462)
T ss_dssp HHHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHS
T ss_pred HHHHhcccc----ccHHHHHHHHHHhccCCCCH--------HHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhC
Confidence 88 2 2211 1236788888888776 43 89999999999999754 2211111 1236678888888
Q ss_pred CC--CHHHHHHHHHHHHHhccCCccchH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 218 FT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 218 ~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
++ ++.++..|++++.++...-..... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 262 (462)
T 1ibr_B 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262 (462)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 789999999999997642111100 001111356666777788999999999999999865443211111115677
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCc------------------ccHHHH--HHcCCHHHHHHHhCC-------CCH
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDS------------------DCKVHI--VQRGAVRPLIEMLQS-------PDV 347 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~------------------~~~~~~--~~~~~~~~L~~~l~~-------~~~ 347 (554)
.++..+.+.+++++..++..+..++.... .....+ .-..++|.++..+.. .++
T Consensus 263 ~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~ 342 (462)
T 1ibr_B 263 ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342 (462)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccc
Confidence 77888888889999999999988874310 000000 113356777777753 245
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhh
Q 008781 348 QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 427 (554)
Q Consensus 348 ~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~ 427 (554)
.+|..++.+|..++..... .+. ..+++.+...+.+.++.++..++.+++.++...... .+..
T Consensus 343 ~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~-------~~~~-------- 404 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-------QLKP-------- 404 (462)
T ss_dssp SHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT-------TTCT--------
T ss_pred hHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH-------HHHH--------
Confidence 7899999999999865431 222 345667778888999999999999999998753210 0000
Q ss_pred hhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC
Q 008781 428 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (554)
Q Consensus 428 ~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 478 (554)
.-..+++.++..+.++++.||..|+++|++++..
T Consensus 405 -----------------~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 405 -----------------LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp -----------------TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 0123588999999999999999999999999754
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=3e-12 Score=115.75 Aligned_cols=191 Identities=23% Similarity=0.241 Sum_probs=157.6
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHH
Q 008781 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (554)
Q Consensus 248 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 327 (554)
.+.++.|+..|.++++.+|..++..|+.+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4678999999999999999999999998832 2478889999999999999999999999842
Q ss_pred HHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcc
Q 008781 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (554)
Q Consensus 328 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (554)
.+.++.|+.++.++++.+|..++++|+.+.. ...++.|..++.++++.++..++.+|..+...
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE--- 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---
Confidence 3467899999999999999999999999853 24688899999999999999999999998421
Q ss_pred hhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008781 408 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 487 (554)
Q Consensus 408 ~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 487 (554)
..++.|..+++++++.++..++.+|+.+..
T Consensus 143 ----------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 172 (211)
T 3ltm_A 143 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG---------- 172 (211)
T ss_dssp ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------
T ss_pred ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 126778888999999999999999999843
Q ss_pred cCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCcC
Q 008781 488 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 523 (554)
Q Consensus 488 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 523 (554)
...++.|..++.++++.+|..|..+|.++..+...+
T Consensus 173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~ 208 (211)
T 3ltm_A 173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHH 208 (211)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHC--------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCC
Confidence 235778899999999999999999999998875543
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.43 E-value=1.2e-11 Score=111.82 Aligned_cols=189 Identities=28% Similarity=0.312 Sum_probs=158.1
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHH
Q 008781 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (554)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 285 (554)
.+.++.|+.+|+++++.++..++.+|..+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4568899999999999999999999998763 2568999999999999999999999999842
Q ss_pred HHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC
Q 008781 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (554)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~ 365 (554)
.+.++.|+.++.++++.++..++++|+.+.. .+.++.|+.++.++++.+|..++.+|+++..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 2467889999999999999999999999842 2467899999999999999999999999842
Q ss_pred cchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHH
Q 008781 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (554)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 445 (554)
...++.|..++.++++.++..++.+|..+...
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------------------------------------- 173 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE----------------------------------------- 173 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-----------------------------------------
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-----------------------------------------
Confidence 24688899999999999999999999998421
Q ss_pred hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
..++.|..++.++++.+|..|..+|.++.....
T Consensus 174 --~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 174 --RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp --HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 136778888999999999999999999976654
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.40 E-value=2.9e-11 Score=108.22 Aligned_cols=184 Identities=28% Similarity=0.319 Sum_probs=157.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
+..+.++++|+++++.++..|+.+|..+.. .+.++.|+.++.++++.+|..++++|+.+. .+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--~~----- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--DE----- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG-----
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--CH-----
Confidence 456899999999999999999999998763 246899999999999999999999999983 22
Q ss_pred HHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc
Q 008781 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
..++.|+.++.++++.++..++++|+++.. ...++.|+.++.++++.+|..++++|+++..
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 367889999999999999999999999842 2367889999999999999999999999853
Q ss_pred chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHh
Q 008781 367 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (554)
Q Consensus 367 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (554)
...++.|..++.++++.++..|+.+|..+...
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~------------------------------------------ 168 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE------------------------------------------ 168 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH------------------------------------------
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch------------------------------------------
Confidence 34788899999999999999999999998311
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhc
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (554)
..++.|..++.++++.++..|..+|..+-
T Consensus 169 -~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 -RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 13677888899999999999999999874
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.38 E-value=1.9e-11 Score=109.50 Aligned_cols=185 Identities=24% Similarity=0.266 Sum_probs=156.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHH
Q 008781 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (554)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 328 (554)
+..+.++..|.++++.+|..|+++|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 457899999999999999999999998832 2467889999999999999999999999842
Q ss_pred HHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcch
Q 008781 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 408 (554)
Q Consensus 329 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 408 (554)
.+.++.|+.++.++++.+|..++++|+++.. ...++.|..++.++++.++..++++|..+...
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---- 137 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---- 137 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----
Confidence 2467899999999999999999999999853 24688899999999999999999999998431
Q ss_pred hHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHc
Q 008781 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 488 (554)
Q Consensus 409 ~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 488 (554)
..++.|..++.++++.++..++.+|+.+.. .
T Consensus 138 ---------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~ 168 (201)
T 3ltj_A 138 ---------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------E 168 (201)
T ss_dssp ---------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------H
T ss_pred ---------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------h
Confidence 126788889999999999999999999832 2
Q ss_pred CcHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 008781 489 GGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (554)
Q Consensus 489 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (554)
..++.|..++.++++.+|..|..+|.++..
T Consensus 169 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 169 RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 357888899999999999999999988753
No 61
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.36 E-value=2e-10 Score=122.25 Aligned_cols=200 Identities=16% Similarity=0.142 Sum_probs=149.7
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHH-HhhcCCCCCccccCCCcchHHHHHHH
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.+..+++.|.+. +...+..|+++|++++.++..+..+...|+|..++ .+|.+++. +|+..|
T Consensus 35 ~i~Pll~~L~S~------~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~------------~Vr~~A 96 (684)
T 4gmo_A 35 KILPVLKDLKSP------DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI------------DSRAAG 96 (684)
T ss_dssp TTHHHHHHHSSS------CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH------------HHHHHH
T ss_pred hHHHHHHHcCCC------CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH------------HHHHHH
Confidence 344555555433 55688899999999999999999999999988765 46766665 999999
Q ss_pred HHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCc-------------cccchhHHHHHHHHHHHHHhhcCchhHH
Q 008781 137 AFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSN-------------CSRAVNSVIRRAADAITNLAHENSSIKT 201 (554)
Q Consensus 137 ~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~-------------~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 201 (554)
+++|.||+ .+++.+..+...|+++.|..+++...... .....+++...++.+|++||..+.....
T Consensus 97 ~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~ 176 (684)
T 4gmo_A 97 WEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHE 176 (684)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999 67899999999999999999997532110 0112235677889999999998888888
Q ss_pred HHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHH---HHHHhhcCCCHHHHHHHHHHHHH
Q 008781 202 RVRMEGGIPPLVELLEF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP---TLILMLRSEDSAIHYEAVGVIGN 275 (554)
Q Consensus 202 ~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~---~L~~ll~~~~~~v~~~a~~~L~~ 275 (554)
.+...++++.|+..|.+ ....++..++.+|+.++.+++.....+.+.+... .++.+..+ +...+..+++.|.|
T Consensus 177 ~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~N 255 (684)
T 4gmo_A 177 AVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHN 255 (684)
T ss_dssp HHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHh
Confidence 88889999999998854 3468999999999999998887777777665432 22222222 22345556666666
Q ss_pred H
Q 008781 276 L 276 (554)
Q Consensus 276 L 276 (554)
+
T Consensus 256 i 256 (684)
T 4gmo_A 256 V 256 (684)
T ss_dssp H
T ss_pred H
Confidence 5
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.34 E-value=1.3e-10 Score=133.00 Aligned_cols=410 Identities=14% Similarity=0.075 Sum_probs=251.0
Q ss_pred hHHHHHHHHHHHHHhccChhhH-HHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChh-hHHH
Q 008781 76 DRAAAKRATHVLAELAKNEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQL 152 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-~~~~ 152 (554)
|..++..|...|.+....+... ..-....+++.|++.|.+.+. .+|..|+.+|+.++ ..++ ..
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~------------~vR~~A~~~L~~l~~~~~~~~~-- 84 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAVKCLGPLVSKVKEYQV-- 84 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHHHHHHHHHTTSCHHHH--
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHhCCHHHH--
Confidence 6778999988888876532100 000111347788888875444 99999999999998 3222 11
Q ss_pred HHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhH-----HHHHhcCChHHHHHhhc-CCCHHHHHH
Q 008781 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIPPLVELLE-FTDTKVQRA 226 (554)
Q Consensus 153 i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~-----~~~~~~~~i~~L~~ll~-~~~~~v~~~ 226 (554)
..+++.++..+.+++. .++..++.+|..++....... ..-.....+|.|+..+. ++++.++..
T Consensus 85 ---~~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~ 153 (1230)
T 1u6g_C 85 ---ETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLE 153 (1230)
T ss_dssp ---HHHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred ---HHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 1245667777766555 889999999999986544320 11122457889999998 588999999
Q ss_pred HHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCC-h
Q 008781 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-S 305 (554)
Q Consensus 227 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~ 305 (554)
++.++..++...+....... ..+++.++..+.++++.+|..|+.+|..++...+.. + -...++.++..+.+.. .
T Consensus 154 al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~ 228 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSM 228 (1230)
T ss_dssp HHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCch
Confidence 99999999853222111111 235777888888889999999999999998654321 1 2345778888776543 4
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc-
Q 008781 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD- 384 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~- 384 (554)
.++..++.+++.++...+..... .-..+++.++..+.+.++.+|..++.++..++......-.-.-...++.+++.+.
T Consensus 229 ~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY 307 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCC
Confidence 57777888888887543321110 1246889999999988899999999999999864322110011112333333221
Q ss_pred ------------------------------------CCChhHHHHHHHHHHHcccCCcc-hhHHHhhCccccccchhh-h
Q 008781 385 ------------------------------------SKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEF-I 426 (554)
Q Consensus 385 ------------------------------------~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~~~~-~ 426 (554)
+..+.++..|+.++..++..... ...+.. ..++.+..... .
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~ 386 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKER 386 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCC
Confidence 11246788899999888764321 122221 11222221110 0
Q ss_pred hhhhHHHHHHHHHHHH--------------------------HHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch
Q 008781 427 VQATKDCVAKTLKRLE--------------------------EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 427 ~~~~~~~~~~~~~~l~--------------------------~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (554)
....+..+..++..+- ...-..+++.+...++++++.+|..++.+++.++..-.
T Consensus 387 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 387 EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHch
Confidence 1112211111111111 11233456666667888999999999999998854311
Q ss_pred --hhHHHHHcCcHHHHHHhhCCCCh--hHHHHHHHHHHHHHhh
Q 008781 481 --QRTIFIDGGGLELLLGLLGSTNP--KQQLDGAVALFKLANK 519 (554)
Q Consensus 481 --~~~~~~~~~~l~~L~~ll~~~~~--~v~~~a~~~L~~L~~~ 519 (554)
... .-...++.+...+.+.++ .++..++..+..+...
T Consensus 467 ~~l~~--~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 467 GALTQ--HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp TTTGG--GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred hhhHH--HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh
Confidence 111 112357788888887664 8999999999888753
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.30 E-value=9.3e-11 Score=134.28 Aligned_cols=401 Identities=12% Similarity=0.109 Sum_probs=256.2
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (554)
.+.++..|...+.. +.+..++..|+.+|..++. .+...... -...++.|+..|.+++. .+|..|+
T Consensus 131 ~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~~~------------~vR~~a~ 196 (1230)
T 1u6g_C 131 CKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRL------------AVRKRTI 196 (1230)
T ss_dssp HHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSH------------HHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHcCCcH------------HHHHHHH
Confidence 55566666555542 1345688899999999874 11110000 12346777788876554 8999999
Q ss_pred HHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 008781 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (554)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (554)
.+|+.++..... .+ -...++.++..|...... .++..++.++..++...+.. -.-.-...++.++..+.
T Consensus 197 ~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~-------~~r~~a~~~l~~l~~~~~~~-~~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 197 IALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSM-------STTRTYIQCIAAISRQAGHR-IGEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp HHHHHHTTTC-------CTTHHHHHHHHHHHTCSS-------CSCTTHHHHHHHHHHHSSGG-GTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCch-------hHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhc
Confidence 999999932111 11 234578888888765331 55667888888887644321 11112457788999998
Q ss_pred CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC-------------------------------------
Q 008781 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS------------------------------------- 260 (554)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~------------------------------------- 260 (554)
+.++.++..++.++..++...+....... ..+++.++..+..
T Consensus 266 d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d 344 (1230)
T 1u6g_C 266 VDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDD 344 (1230)
T ss_dssp SCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccc
Confidence 88899999999999988764332211111 1245555544431
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCc----------------c
Q 008781 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS----------------D 324 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~----------------~ 324 (554)
....+|..|+.+|..++...+..-.. .-..+++.++..+.+.+..++..++.++..+..... .
T Consensus 345 ~~~~vR~~A~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (1230)
T 1u6g_C 345 MSWKVRRAAAKCLDAVVSTRHEMLPE-FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 423 (1230)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCTTHHH-HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCC
T ss_pred cCHHHHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccc
Confidence 01357889999999998644432122 224678888888888889999999988877763210 1
Q ss_pred cHHHH--HHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCCh--hHHHHHHHHHHH
Q 008781 325 CKVHI--VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG--SLQHNAAFALYG 400 (554)
Q Consensus 325 ~~~~~--~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~a~~~L~~ 400 (554)
+...+ .-..+++.+...++++++.+|..++.+|+.++........-.-...++.++..+.+.++ .++..++..+..
T Consensus 424 ~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 424 PLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 11111 11345666777788999999999999999998653221111123456777888877654 888888888888
Q ss_pred cccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--
Q 008781 401 LADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-- 478 (554)
Q Consensus 401 l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-- 478 (554)
+...... ..+.. +-..+++.|+..+.+.++.++..++.++..++..
T Consensus 504 ~~~~~~~-~~~~~-------------------------------~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~ 551 (1230)
T 1u6g_C 504 ILCNHSP-QVFHP-------------------------------HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIR 551 (1230)
T ss_dssp HHHSSCG-GGGHH-------------------------------HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCH-HHHHh-------------------------------HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhc
Confidence 7643211 00000 1123578888888888999988898888887521
Q ss_pred c-------hhhHHHHHcCcHHHHHHhh--CCCChhHHHHHHHHHHHHHhhc
Q 008781 479 D-------DQRTIFIDGGGLELLLGLL--GSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 479 ~-------~~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+ .... .-...++.++..+ .+.++.+|..|..++..|+...
T Consensus 552 ~~~~~~~~~~~~--~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 552 PLDQPSSFDATP--YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp CSSSCCCCCCHH--HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccchHH--HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 1 1111 1223577888888 5678899999999999999864
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.21 E-value=2.1e-08 Score=105.24 Aligned_cols=367 Identities=13% Similarity=0.106 Sum_probs=218.3
Q ss_pred CChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHH
Q 008781 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (554)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (554)
.+....++++.+++. ..++.+--.+..++ .+++.-.. ++..+.+=+.+++. .++
T Consensus 74 ~~~~~vvkl~~s~~~------------~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~--------~ir 128 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRY------------TEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP--------TFM 128 (621)
T ss_dssp SCHHHHHHGGGCSCH------------HHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH--------HHH
T ss_pred hhHHHHHHHhcCCCH------------HHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH--------HHH
Confidence 356677778887766 89999999999998 55543211 13455555655554 888
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (554)
..|+.+|+++.. ++. ....++.+.+++ .+.++.++..|+.++..+...+++.. ...++++.+..+|.+
T Consensus 129 ~lALr~L~~i~~--~e~-----~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d 198 (621)
T 2vgl_A 129 GLALHCIANVGS--REM-----AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLND 198 (621)
T ss_dssp HHHHHHHHHHCC--HHH-----HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTC
T ss_pred HHHHHHhhccCC--HHH-----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCC
Confidence 999999999864 332 234678899999 88999999999999999987554432 124789999999999
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC-------------ChHHHHHHHHHHHHHhcC-CcccH
Q 008781 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------------CSESQREAALLLGQFAAT-DSDCK 326 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-------------~~~~~~~a~~~L~nl~~~-~~~~~ 326 (554)
.++.|+..|+.++..++..++..-...+ ...+..|.+++... ++=.+......|..++.. +++..
T Consensus 199 ~d~~V~~~a~~~l~~i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~ 277 (621)
T 2vgl_A 199 QHLGVVTAATSLITTLAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVR 277 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHH
T ss_pred CCccHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHH
Confidence 9999999999999999876654211111 11233344444322 344666777777777643 22322
Q ss_pred HHHHHcCCHHHHHHHhCC-C--------C--HHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHH
Q 008781 327 VHIVQRGAVRPLIEMLQS-P--------D--VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (554)
Q Consensus 327 ~~~~~~~~~~~L~~~l~~-~--------~--~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (554)
..+.+ ++..++..+.+ + + ..+..+++.++..+... ..+. ..++..|..++.++++.++..++
T Consensus 278 ~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~----~~~~-~~~~~~L~~~L~~~~~niry~aL 350 (621)
T 2vgl_A 278 GRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE----PNLL-VRACNQLGQFLQHRETNLRYLAL 350 (621)
T ss_dssp HHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC----HHHH-HHHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc----HHHH-HHHHHHHHHHhcCCCcchHHHHH
Confidence 22222 33334433211 1 2 26777888888887521 1111 13567788888888999999999
Q ss_pred HHHHHcccCCcchhHHHhh--Ccccccc-chhhhhhhhHHHHHHHHHHHH-HHHhhchHHHHHHHHhhCCHHHHHHHHHH
Q 008781 396 FALYGLADNEDNVADFIRV--GGVQKLQ-DGEFIVQATKDCVAKTLKRLE-EKIHGRVLNHLLYLMRVAEKGVQRRVALA 471 (554)
Q Consensus 396 ~~L~~l~~~~~~~~~~~~~--~~i~~L~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 471 (554)
..|..++...+....+... ..+..|. +... ..+....+.+-.+. +..-..++..|...+...+.+++..++..
T Consensus 351 ~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~---~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~ 427 (621)
T 2vgl_A 351 ESMCTLASSEFSHEAVKTHIETVINALKTERDV---SVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLK 427 (621)
T ss_dssp HHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999998654322222111 0111111 1100 01111111111110 01123356666666666777777777777
Q ss_pred HHhhcCC-chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 472 LAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 472 L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
++.++.. +... ...+..|++++......+...+...+..+....+
T Consensus 428 I~~la~k~~~~~-----~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~ 473 (621)
T 2vgl_A 428 VAILAEKYAVDY-----TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD 473 (621)
T ss_dssp HHHHHHHHCSST-----HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhcCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh
Confidence 7776532 1111 1235666666665555566666666666665543
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.21 E-value=4.6e-09 Score=110.23 Aligned_cols=388 Identities=16% Similarity=0.186 Sum_probs=247.3
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (554)
+...+.-+--.+..++. +++.... ++..+.+=|.++++ -++-.|+++|+++.. ++..+
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~------------~ir~lALr~L~~i~~-~e~~~--- 145 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP------------TFMGLALHCIANVGS-REMAE--- 145 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH------------HHHHHHHHHHHHHCC-HHHHH---
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH------------HHHHHHHHHhhccCC-HHHHH---
Confidence 33445555555666665 3443322 25666677777666 889999999999964 44322
Q ss_pred HcCChHHHHHHH--hccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 008781 155 DNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (554)
Q Consensus 155 ~~g~l~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (554)
..++.+.+++ .+.++ .+++.|+.++.++...+++... ..+.++.+.++|.+.++.++..|+.++.
T Consensus 146 --~l~~~v~~~l~~~d~~~--------~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 146 --AFAGEIPKILVAGDTMD--------SVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLIT 212 (621)
T ss_dssp --HHTTHHHHHHHCSSSCH--------HHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3467888888 55555 9999999999999987765422 2478999999999999999999999999
Q ss_pred HhccCCccchHHHHhcCCHHHHH----HhhcCC-------------CHHHHHHHHHHHHHHhcc-ChhhHHHHHHcCCHH
Q 008781 233 TLAFKNDENKNQIVECNALPTLI----LMLRSE-------------DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQ 294 (554)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~L~----~ll~~~-------------~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~ 294 (554)
.++..++.. +. ..++.++ +++... ++-.+...++.|..++.. ++.....+.+ .+.
T Consensus 213 ~i~~~~~~~---~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~ 285 (621)
T 2vgl_A 213 TLAQKNPEE---FK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLE 285 (621)
T ss_dssp HHHHHCHHH---HT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHH
T ss_pred HHHHhChHH---HH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHH
Confidence 998755432 11 2334333 333221 577888999998888753 3444443332 333
Q ss_pred HHHHHhc---------cCC--hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 008781 295 PVIGLLS---------SCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 295 ~L~~lL~---------~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
.++..+. +.+ ..+..+++.++..+. ..++.. ..++..|..++.++++.+|..++.+|..++..
T Consensus 286 ~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 286 TILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLL-----VRACNQLGQFLQHRETNLRYLALESMCTLASS 359 (621)
T ss_dssp HHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Confidence 3443321 112 267778888888885 222221 13567788888889999999999999999875
Q ss_pred CCcchhhhhcCCHHHHHHHhc-CCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHH
Q 008781 364 MHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 442 (554)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~ 442 (554)
.+... .+ ......++.++. +++..++..++.+|..++.. .|...++.. ..+.+.+. + ...+.-+...+..+.
T Consensus 360 ~~~~~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~Iv~e-L~~yl~~~--d-~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 360 EFSHE-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQIVAE-MLSYLETA--D-YSIREEIVLKVAILA 432 (621)
T ss_dssp TTTHH-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHHHHH-HHHHHHHC--C-HHHHHHHHHHHHHHH
T ss_pred cCcHH-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHHHHH-HHHHHHhc--C-HHHHHHHHHHHHHHH
Confidence 43212 22 346777888888 89999999999999999843 455554442 00011000 0 011111222333333
Q ss_pred HHH---hhchHHHHHHHHhhCCHHHHHHHHHHHHhhcC-CchhhHHHHHcCcHHHHHHhhCCCC--hhHHHHHHHHHHHH
Q 008781 443 EKI---HGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTN--PKQQLDGAVALFKL 516 (554)
Q Consensus 443 ~~~---~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~L 516 (554)
..+ ....+..|+.++......+...++..+..+.. .++.+.. ++..|.+.+.++. ..+-..++|.+..-
T Consensus 433 ~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy 507 (621)
T 2vgl_A 433 EKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGY-----AAKTVFEALQAPACHENLVKVGGYILGEF 507 (621)
T ss_dssp HHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHH-----HHHHHHHHHcCccchHHHHHHHHHHhcch
Confidence 333 34467888888887666677777777777744 3444443 3567788887543 34556677888877
Q ss_pred HhhcCc
Q 008781 517 ANKATT 522 (554)
Q Consensus 517 ~~~~~~ 522 (554)
+.....
T Consensus 508 ~~~~~~ 513 (621)
T 2vgl_A 508 GNLIAG 513 (621)
T ss_dssp THHHHS
T ss_pred HHHhcc
Confidence 655433
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.05 E-value=2.2e-09 Score=114.19 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=153.8
Q ss_pred CCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH-HHhccccCccccchhHH
Q 008781 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSV 181 (554)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~-lL~~~~~~~~~~~~~~~ 181 (554)
..++| +++.|++++. +.|..|+++|++|+.++..+..+...|++..++. +|.+++. ++
T Consensus 34 ~~i~P-ll~~L~S~~~------------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~V 92 (684)
T 4gmo_A 34 DKILP-VLKDLKSPDA------------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DS 92 (684)
T ss_dssp HTTHH-HHHHHSSSCC------------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HH
T ss_pred hhHHH-HHHHcCCCCH------------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HH
Confidence 34444 5677888877 8999999999999999999999999999987654 5666655 99
Q ss_pred HHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhhcCCC---------------------HHHHHHHHHHHHHhccCCc
Q 008781 182 IRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTD---------------------TKVQRAAAGALRTLAFKND 239 (554)
Q Consensus 182 ~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll~~~~---------------------~~v~~~a~~~L~~l~~~~~ 239 (554)
+..|+++|.||+.+ .++....+...|+++.|..++++.. ..+...++.+|.+++..+.
T Consensus 93 r~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~ 172 (684)
T 4gmo_A 93 RAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD 172 (684)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999975 4677888889999999999885311 1344567889999998777
Q ss_pred cchHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH--hccCChHHHHHHHHH
Q 008781 240 ENKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL--LSSCCSESQREAALL 314 (554)
Q Consensus 240 ~~~~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l--L~~~~~~~~~~a~~~ 314 (554)
.....+...+.++.|+..|.+ ...+++..++.+|..++.+++...+.+.+.+....+..+ +.......+..++++
T Consensus 173 ~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~gi 252 (684)
T 4gmo_A 173 EIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGV 252 (684)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 777788888999999988753 346899999999999999998888888876643322222 233444567788899
Q ss_pred HHHHh
Q 008781 315 LGQFA 319 (554)
Q Consensus 315 L~nl~ 319 (554)
|.|+.
T Consensus 253 L~Ni~ 257 (684)
T 4gmo_A 253 LHNVF 257 (684)
T ss_dssp HHHHH
T ss_pred HHhHh
Confidence 98874
No 67
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.96 E-value=3.2e-07 Score=89.55 Aligned_cols=347 Identities=12% Similarity=0.146 Sum_probs=214.3
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc---hhHHHHHhcCCh-HHHHH-hhcCCCHHHHHHHHHH
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---SIKTRVRMEGGI-PPLVE-LLEFTDTKVQRAAAGA 230 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~~~i-~~L~~-ll~~~~~~v~~~a~~~ 230 (554)
..++..++++|+..... +++.+.+..+..+...++ .....+....-. ..+.. .+..++.-....++.+
T Consensus 76 ~~~~~~~l~lL~~~~~~-------d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l 148 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNE-------DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNV 148 (480)
T ss_dssp STTHHHHHHHHHSCCCH-------HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcChH-------HHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHH
Confidence 35678889999876554 899999999999998766 333344443332 22333 3333445566667776
Q ss_pred HHHhccCCccchHHHHhcCCHH--HHHHhhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcC--CHHHHHHHhcc---
Q 008781 231 LRTLAFKNDENKNQIVECNALP--TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSS--- 302 (554)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~~~--~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~l~~L~~lL~~--- 302 (554)
+..++.......+.+- .++. .++..|.. ++...+.-++.+|..|... +..+..+...+ .++.++.++..
T Consensus 149 ~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~ 225 (480)
T 1ho8_A 149 VSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATD 225 (480)
T ss_dssp HHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhc
Confidence 6666543333221111 1223 45555554 3455566788899888765 66667776542 46666554431
Q ss_pred ------------C--ChHHHHHHHHHHHHHhcCCcccHHHHHHcCCH--HHHHHHhC-CCCHHHHHHHHHHHHHHhcCCC
Q 008781 303 ------------C--CSESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQ-SPDVQLREMSAFALGRLAQDMH 365 (554)
Q Consensus 303 ------------~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~--~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~ 365 (554)
. ...++.+++.+++-++ ..++....+...++. +.|+.+++ +....+.+-++.+|.|+.....
T Consensus 226 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLS-F~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~ 304 (480)
T 1ho8_A 226 SQLATRIVATNSNHLGIQLQYHSLLLIWLLT-FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRV 304 (480)
T ss_dssp -------------CCHHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSS
T ss_pred cccccccccccCCCccHHHHHHHHHHHHHHH-cCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccc
Confidence 1 2456788999999996 445555556555543 56667677 4668899999999999987542
Q ss_pred -cch----hhhhcCCHHHHHHHhcC---CChhHHHHHHHHHHHc-------ccCCcchhHHHhhCccccccchhhhhhhh
Q 008781 366 -NQA----GIAHNGGLVPLLKLLDS---KNGSLQHNAAFALYGL-------ADNEDNVADFIRVGGVQKLQDGEFIVQAT 430 (554)
Q Consensus 366 -~~~----~l~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l-------~~~~~~~~~~~~~~~i~~L~~~~~~~~~~ 430 (554)
... .++-.+.+.++++.|.. .|+++....-.....| +..++...++. .|.+ ++. .+..+
T Consensus 305 ~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~-sG~L----~WS-P~H~s 378 (480)
T 1ho8_A 305 KQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD-SKLL----CWS-PPHVD 378 (480)
T ss_dssp TTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH-HTCC----CCC-GGGGC
T ss_pred hhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-cCCc----ccC-CCccc
Confidence 221 12222223455555543 4566555433333322 22222322222 2322 111 11222
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHhh----------CCHHHHHHHHHHHHhhcCC-chhhHHHHHcCcHHHHHHhhC
Q 008781 431 KDCVAKTLKRLEEKIHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLG 499 (554)
Q Consensus 431 ~~~~~~~~~~l~~~~~~~~l~~L~~ll~~----------~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~ 499 (554)
..-+.++..++++ -+..++..|+.++.+ .++.+..-||.=|+.++.. |.++..+.+.|+-..+++++.
T Consensus 379 e~FW~ENa~kf~e-~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~ 457 (480)
T 1ho8_A 379 NGFWSDNIDEFKK-DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN 457 (480)
T ss_dssp HHHHHHHSGGGSS-GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS
T ss_pred hhHHHHHHHHHHh-cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc
Confidence 2334444444433 466688999999973 4788888899999999764 668888889999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhc
Q 008781 500 STNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 500 ~~~~~v~~~a~~~L~~L~~~~ 520 (554)
++|++||.+|..++..+..+.
T Consensus 458 h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 458 HSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.87 E-value=1.7e-07 Score=81.21 Aligned_cols=188 Identities=20% Similarity=0.147 Sum_probs=148.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHH
Q 008781 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (554)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 286 (554)
+.+..|..++.+.|+.++..++.+|..+...-+.......-..+++.++.++++.+..+...|++||..|..+.+-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35678999999999999999999999998753333333333457999999999999999999999999998765543333
Q ss_pred HHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCc
Q 008781 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
+. .+...+..++.++++-.+.+++..++.+- -....+ +++..+.+++.+.+..++..++.+|.+++...++
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklk-v~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQ-PLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCC-BSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCC-cccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 32 25678889999999999999999999993 222222 2577888999999999999999999999876544
Q ss_pred chhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC
Q 008781 367 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (554)
Q Consensus 367 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (554)
...+ .+.+.-+-.++++.++.++..|+.++..+...+
T Consensus 184 ~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 184 SGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 3322 235556778889999999999999999998764
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.75 E-value=3.4e-06 Score=89.76 Aligned_cols=302 Identities=15% Similarity=0.117 Sum_probs=194.5
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 008781 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (554)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (554)
++.++..|+.+||.+..+... .++..|...|.+.+..........++..|+..|+-...+... ...
T Consensus 408 ~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev 473 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEV 473 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHH
T ss_pred cHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHH
Confidence 348999999999999833221 146778888876651100000116788888888887653321 123
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
+..|..++.+++..++..|+.+|+.+-.+ ..+.. ++..|+..+ .+.+..+++.++..|+.+..+.++
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vG-Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e----- 541 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLG-TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE----- 541 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG-----
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcc-cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH-----
Confidence 45778888877777777888888876432 22221 234555443 356789999999999999777665
Q ss_pred HHcCCHHHHHHHhc-cCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCC
Q 008781 288 LAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMH 365 (554)
Q Consensus 288 ~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~ 365 (554)
.++.++..|. +.++.++..++.+++--..+.... . .++.|+..+. +.+..+|..|+.+|+.+....+
T Consensus 542 ----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 542 ----LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp ----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred ----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 3555666665 466777777777776544332222 1 3555555544 6678899999999999875543
Q ss_pred cchhhhhcCCHHHHHH-HhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHH
Q 008781 366 NQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (554)
Q Consensus 366 ~~~~l~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~ 444 (554)
..++.++. ++++.++.+|..++.+|+.++....+..
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~----------------------------------- 647 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS----------------------------------- 647 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH-----------------------------------
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH-----------------------------------
Confidence 24566665 4567889999999999999976544321
Q ss_pred HhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhh--HHHHHcCcHHHHHHhhCC--CChhHHHHHHHHHHHH
Q 008781 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR--TIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKL 516 (554)
Q Consensus 445 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L 516 (554)
++..|..++++.+..|+..|+.+|+.+..+.... ..+ .+.+..|..+..+ .++..+.-+..+..-+
T Consensus 648 ----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 648 ----AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp ----HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3567778889999999999999999995543211 001 1123445566543 3455555555554444
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.73 E-value=1.4e-06 Score=75.62 Aligned_cols=188 Identities=17% Similarity=0.110 Sum_probs=153.3
Q ss_pred CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 008781 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (554)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (554)
+.+..|..+|.+.++ .++.+++.+|..+...-+..-....-...++.++.++++.|..+...|++||..+..
T Consensus 33 ~~l~~L~~LL~dkD~--------~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 33 RALFLILELAGEDDE--------TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHTTSSCH--------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccch--------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 457888899977766 999999999999998655555555557789999999999999999999999999999
Q ss_pred CCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHH
Q 008781 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (554)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 316 (554)
+.|-..+.+.. +...+..++.+.++-++..++..++.+-..+.. .+++..+.+++.+.+.+++..+..++.
T Consensus 105 ~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 105 DVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFL 175 (265)
T ss_dssp TCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 87777777765 478999999999999999999999999332221 125667888898899999999999999
Q ss_pred HHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC
Q 008781 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 317 nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~ 364 (554)
++++.+.+.. .-.+++.-+-.++++.|+.+++.|+.++-.+...+
T Consensus 176 eia~~S~D~~---i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 176 NMLNSSADSG---HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHGGGCSSCC---CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HhhcccCCHH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 9986543321 01346667778899999999999999999998764
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.72 E-value=7.6e-08 Score=88.53 Aligned_cols=186 Identities=14% Similarity=0.104 Sum_probs=140.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCCcchhhhh
Q 008781 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAH 372 (554)
Q Consensus 294 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~~~~~l~~ 372 (554)
+.+...+.+.++..|+.|+..|..+....+.....- -..+++.|...+. +.+..++..++.++..|+..-...-.-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 457778889999999999999999986522211000 0235777888884 89999999999999999964322111222
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHH
Q 008781 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (554)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 452 (554)
...++.++..+.+++..++..+..+|..++.... + ..+++.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----------~-----------------------------~~ll~~ 137 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----------L-----------------------------EAQQES 137 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----------H-----------------------------HHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----------H-----------------------------HHHHHH
Confidence 3478889999999999999999999999876432 0 013678
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhc-CC-ch--hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 453 LLYLMRVAEKGVQRRVALALAHLC-SP-DD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~-~~-~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+...+.+.++.+|..++..|..+. .. ++ ....+ ...++.|..++.++++++|..|..++..++..-.
T Consensus 138 l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 138 IVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 888899999999999999999963 32 22 12222 2568999999999999999999999999997653
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.70 E-value=4.9e-06 Score=88.59 Aligned_cols=292 Identities=14% Similarity=0.090 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhcc-ccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 008781 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRH-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~-~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (554)
..+..|+..||-+- .+.+ +++..|-.+|... ... ..++..|+..|+-+..+... ..
T Consensus 373 ~~k~sA~aSLGlIh~g~~~--------~gl~~L~~yL~~~~s~~------~~ik~GAllaLGli~ag~~~--------~~ 430 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNLL--------EGKKVMAPYLPGSRASS------RFIKGGSLYGLGLIYAGFGR--------DT 430 (963)
T ss_dssp HHHHHHHHHHHHHTSSCTT--------THHHHHTTTSTTSCCSC------HHHHHHHHHHHHHHTTTTTH--------HH
T ss_pred HHHHHHHHHhhhhccCchH--------HHHHHHHHhccccCCCc------HHHHHHHHHHHHHhcCCCcH--------HH
Confidence 34556666676665 2221 2345555555421 111 17888899999988764432 13
Q ss_pred hHHHHHhhcCCC--------HHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccC
Q 008781 209 IPPLVELLEFTD--------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (554)
Q Consensus 209 i~~L~~ll~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 280 (554)
+..|...+.+++ +.++..|+..|+.+..+.. + ..+++.|..++.+++..++..|+.+|+.+..++
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence 566777776654 6788888888888765322 1 124677888888888778888888888875443
Q ss_pred hhhHHHHHHcCCHHHHHHHh-ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHH
Q 008781 281 PNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALG 358 (554)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~ 358 (554)
... . ++..|++.+ .+.+..+++.++..|+.+..+.++ .++.+++.|. +.++-+|..++.+++
T Consensus 504 gn~-~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alg 567 (963)
T 4ady_A 504 GKP-E------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIA 567 (963)
T ss_dssp CCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCH-H------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 221 1 234444443 455678999999999998755544 3566666666 678899999888888
Q ss_pred HHhcCCCcchhhhhcCCHHHHHHHh-cCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHH
Q 008781 359 RLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 437 (554)
Q Consensus 359 ~L~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~ 437 (554)
.-..+..+.. .++.|+..+ .+.+..+|..|+.+|+.+....+.
T Consensus 568 lAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e------------------------------ 611 (963)
T 4ady_A 568 LAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT------------------------------ 611 (963)
T ss_dssp HHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS------------------------------
T ss_pred HHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH------------------------------
Confidence 7665554432 455555544 566788999999999988654431
Q ss_pred HHHHHHHHhhchHHHHHH-HHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHH
Q 008781 438 LKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (554)
Q Consensus 438 ~~~l~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 516 (554)
.++.++. ++++.++.+|..++.+|+.++.+..... ++..|..+..+.+..|+..|+.+|..+
T Consensus 612 -----------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 612 -----------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp -----------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 1334444 3467899999999999999987665433 367888889999999999999999988
Q ss_pred Hhhc
Q 008781 517 ANKA 520 (554)
Q Consensus 517 ~~~~ 520 (554)
....
T Consensus 675 g~gt 678 (963)
T 4ady_A 675 LIQQ 678 (963)
T ss_dssp STTC
T ss_pred hcCC
Confidence 8653
No 73
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.66 E-value=8e-07 Score=84.97 Aligned_cols=278 Identities=13% Similarity=0.022 Sum_probs=156.5
Q ss_pred hHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 008781 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (554)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 238 (554)
...+++++.+.+. ++++..--.+.+++...++. + =.+..+.+-++++++-++..|+++|+++..
T Consensus 70 f~~v~kl~~s~d~--------~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 70 FFAMTKLFQSNDP--------TLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp HHHHHGGGGCCCH--------HHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 3455667776655 88888888888877653332 1 245788888899999999999999999985
Q ss_pred ccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHH
Q 008781 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318 (554)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 318 (554)
++..+. +.+.+.+.+.+.++.||..|+-+...|....++.. .+++..+..++.+.++-+...|..+|..+
T Consensus 134 ~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 134 STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 333322 45667788889999999999999999987776643 36899999999999999999999999999
Q ss_pred hcCCcccHHHHHHcCCHHHHHHHhCCC---CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHH
Q 008781 319 AATDSDCKVHIVQRGAVRPLIEMLQSP---DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (554)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~L~~~l~~~---~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (554)
...+.. .+..++..+... ++..+...+..+..++..++.. .....++.+..++++.++.|...|+
T Consensus 204 ~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~ 271 (355)
T 3tjz_B 204 RKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAA 271 (355)
T ss_dssp HTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHH
T ss_pred HhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHH
Confidence 754321 223334444332 4555555455544444332111 2234566777788889999999999
Q ss_pred HHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 008781 396 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (554)
Q Consensus 396 ~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 475 (554)
.++..+...+.. ... . +...|..++.++++++|..|++.|..+
T Consensus 272 k~I~~l~~~~~~---~~~-~---------------------------------a~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 272 SAIVNLPGCSAK---ELA-P---------------------------------AVSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp HHHTC------------------------------------------------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred HHHHhccCCCHH---HHH-H---------------------------------HHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 999998553221 111 1 123455677889999999999999999
Q ss_pred cCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHH
Q 008781 476 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (554)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 515 (554)
.......-. ..-..+.+++.++|..+...|...|..
T Consensus 315 ~~~~P~~v~----~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 315 AMKHPSAVT----ACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ----------------------------------------
T ss_pred HHHCcHHHH----HHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 765442211 134577888999998888777766654
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.63 E-value=2.8e-07 Score=84.71 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=140.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCh-hhHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP-NIKKEV 287 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~-~~~~~~ 287 (554)
+.+.+.+.+.+...|..++..|..+..+.+....... ..+++.|...+. +.+..++..++.+++.|+..-. ....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-- 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-- 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH--
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 4688888999999999999999999875332111001 235777888884 8999999999999999985422 1212
Q ss_pred HHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc
Q 008781 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (554)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~ 367 (554)
.-..+++.++..+.+.+..++..+..+|.++..... . ..+++.+...+++.++.+|..++.+|..+.......
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 223478999999999999999999999999975422 1 236788889999999999999999999976543211
Q ss_pred --hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCC
Q 008781 368 --AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (554)
Q Consensus 368 --~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (554)
..-.-...++.+..++.+.++++|..|..++..++..-
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 11112357888999999999999999999999987543
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.63 E-value=6.6e-06 Score=68.26 Aligned_cols=216 Identities=19% Similarity=0.192 Sum_probs=166.8
Q ss_pred hCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhH
Q 008781 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (554)
Q Consensus 102 ~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~ 180 (554)
+..++..++.+|..+-. .|+..|+.++..++ .-|+....++ ..|+-+++.+..- .
T Consensus 30 d~~~l~~lI~~LDDDlw------------tV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaI-------p 85 (253)
T 2db0_A 30 DESVLKKLIELLDDDLW------------TVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAI-------P 85 (253)
T ss_dssp CHHHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSH-------H
T ss_pred hHHHHHHHHHHhccHHH------------HHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccC-------c
Confidence 34568888899977654 89999999999999 7777655443 5677777766442 6
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (554)
+......+++.++..+|+.- .+.+|.+..-..-+++.++.....+|..+...+|.... +++..+..++.+
T Consensus 86 ltqeIa~a~G~la~i~Pe~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smlts 155 (253)
T 2db0_A 86 LTQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSS 155 (253)
T ss_dssp HHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSC
T ss_pred hHHHHHHHHhHHHHhCHHHH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcC
Confidence 66778889999998777643 34578888888888999999999999999976665432 356778899999
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHH
Q 008781 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~ 340 (554)
.+..-+..++.++..+..+.. +++ ...++.|..+|.+.+.-++..+..+|.+++..++..+.. +..-+.
T Consensus 156 kd~~Dkl~aLnFi~alGen~~---~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~ 224 (253)
T 2db0_A 156 KNREDKLTALNFIEAMGENSF---KYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLE 224 (253)
T ss_dssp SSHHHHHHHHHHHHTCCTTTH---HHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHH
T ss_pred CChHHHHHHHHHHHHHhccCc---ccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHH
Confidence 998888899988888844332 222 458999999999999999999999999999877775542 334455
Q ss_pred HhCCCCHHHHHHHHHHHHHHhc
Q 008781 341 MLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 341 ~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
-+.+.+..+....-..|+.++.
T Consensus 225 e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 225 ELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HCCCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888764
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.61 E-value=1.4e-05 Score=66.36 Aligned_cols=217 Identities=18% Similarity=0.185 Sum_probs=162.5
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc-CChHHHHHHHHHHHHHhcCCcc
Q 008781 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD 324 (554)
Q Consensus 246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~ 324 (554)
.+..+++.++.+|.++-..|+.+|+..+.+++...++....+ +..|+.+++. ...+...+.+.+++.++...++
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 345678899999998889999999999999998877765443 4567777654 4466778889999999866555
Q ss_pred cHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC
Q 008781 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 325 ~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (554)
... +++|.+..-..-+++.++-+...+|..+++..+.- -.+...-+..++.+++..=+..|+..+..+..+
T Consensus 104 ~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 104 LVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp HHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred HHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 433 35777777777789999999999999998743221 123455677888888877777777777777654
Q ss_pred CcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch-hhH
Q 008781 405 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRT 483 (554)
Q Consensus 405 ~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~ 483 (554)
.. +. -..++|+|+.+|++.+.-||..++.+|.+++.-.+ .|.
T Consensus 175 ~~---~y----------------------------------v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 175 SF---KY----------------------------------VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp TH---HH----------------------------------HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred Cc---cc----------------------------------cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 31 11 12258999999999999999999999999977654 554
Q ss_pred HHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 484 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 484 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
. +...++-+.+.+..+++..-.+|..++.-
T Consensus 218 i------i~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 218 V------VIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp H------HHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred H------HHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4 34455666788889999988888888753
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.57 E-value=4.1e-07 Score=83.58 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=138.2
Q ss_pred HHHHhccCChHHHHHHHHHHHH-HhcCCcccHHHHHH-cCCHHHHHHHh-CCCCHHHHHHHHHHHHHHhcCCC-cchh-h
Q 008781 296 VIGLLSSCCSESQREAALLLGQ-FAATDSDCKVHIVQ-RGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMH-NQAG-I 370 (554)
Q Consensus 296 L~~lL~~~~~~~~~~a~~~L~n-l~~~~~~~~~~~~~-~~~~~~L~~~l-~~~~~~v~~~a~~~L~~L~~~~~-~~~~-l 370 (554)
+...+.+.++.-|++|+..|.. +..+.+.......+ ..++..|...+ ++.+..++..|+.+|+.|+.+-. ..-. -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5566788999999999999999 87443322100001 13567788888 68899999999999999995432 2211 2
Q ss_pred hhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchH
Q 008781 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (554)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 450 (554)
.....++.++..+.+....|+..+..++..++...+... ..+.++ .++
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~---~~~~l~-----------------------------~ll 148 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA---SSGRNE-----------------------------DML 148 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC---TTCTTH-----------------------------HHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc---cCCcHH-----------------------------HHH
Confidence 223468889999999999999999999988876432100 000011 147
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhhcCCch---hhHHHHH-cCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 451 NHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+.|+..+.+.++.+|..++.+|..++.... ....-.- ...++.|..++.++++.+|..|..+|..+...-
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999954322 1111122 568999999999999999999999999998754
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.57 E-value=1.8e-06 Score=82.56 Aligned_cols=248 Identities=11% Similarity=0.074 Sum_probs=161.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
....+++++.++|..+++-..-.+.+++...+ +.++ ++..+.+=+.++++-+|-.|+++|+++.. ++..+.
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~---e~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~- 139 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE---DVII---VTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA- 139 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS---CGGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH---HHHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-
Confidence 34567889999999999999999988886322 2222 46788888889999999999999999953 333333
Q ss_pred HHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc
Q 008781 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (554)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~ 367 (554)
+.+.+.+.+.+.++-+++.|+.+...+....++. + .+++..+.+++.+.++.++.+|+.+|..+..++.
T Consensus 140 ----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-- 208 (355)
T 3tjz_B 140 ----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-- 208 (355)
T ss_dssp ----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--
Confidence 4567888999999999999999999998655553 2 3689999999999999999999999999986431
Q ss_pred hhhhhcCCHHHHHHHhcCC---ChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHH
Q 008781 368 AGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (554)
Q Consensus 368 ~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~ 444 (554)
. .+..++..+... ++-.+...+..+..+....+..
T Consensus 209 ~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~------------------------------------ 246 (355)
T 3tjz_B 209 L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------------------------------------ 246 (355)
T ss_dssp H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh------------------------------------
Confidence 1 233344444332 3333333333333433322000
Q ss_pred HhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 445 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
....+++.+..++++.++.|..+|++++..+...+.. ....++..|..++.++++.+|..|.+.|..+....+
T Consensus 247 ~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 247 RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp ----------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 0112356666777889999999999999998553221 112356677888889999999999999998887654
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.9e-06 Score=77.90 Aligned_cols=191 Identities=8% Similarity=0.031 Sum_probs=138.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH-hccCCccchHHHHh-cCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhccC--hhhH-
Q 008781 211 PLVELLEFTDTKVQRAAAGALRT-LAFKNDENKNQIVE-CNALPTLILML-RSEDSAIHYEAVGVIGNLVHSS--PNIK- 284 (554)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~~~~~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~--~~~~- 284 (554)
.+...+.+.++.-|..++..|.. ++.+.+.......+ ..++..|...+ .+.+..++..|+.+|+.|+.+- +...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667889999999999999999 87543332100001 13467788888 6889999999999999998642 2322
Q ss_pred HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC
Q 008781 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~ 364 (554)
.+. ..+++.++..+.+....++..+..++..++...+.......-..+++.|+..+++.++.++..++.+|..++...
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 222 237889999999988999999888888887533211000000126778888999999999999999999998654
Q ss_pred Ccc-hhh--hh-cCCHHHHHHHhcCCChhHHHHHHHHHHHccc
Q 008781 365 HNQ-AGI--AH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (554)
Q Consensus 365 ~~~-~~l--~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (554)
... ..+ .- ...++.+.+++.+.++++|..|..++..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 432 221 22 5678899999999999999999999999864
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.36 E-value=6.7e-08 Score=79.44 Aligned_cols=120 Identities=17% Similarity=0.157 Sum_probs=91.5
Q ss_pred cCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHH
Q 008781 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 411 (554)
Q Consensus 332 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 411 (554)
...++.+..+|+++++.+|..++++|+++.. ..++.|+.++.++++.++..|+++|.++...
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------
Confidence 4567888899999999999999888876632 1368899999999999999999999987521
Q ss_pred HhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcH
Q 008781 412 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 491 (554)
Q Consensus 412 ~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l 491 (554)
..++.|+.+++++++.||..++++|+.+.. ...+
T Consensus 73 ------------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~ 106 (131)
T 1te4_A 73 ------------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVR 106 (131)
T ss_dssp ------------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHH
T ss_pred ------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHH
Confidence 126778888999999999999999999852 2357
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHH
Q 008781 492 ELLLGLLGSTNPKQQLDGAVALFK 515 (554)
Q Consensus 492 ~~L~~ll~~~~~~v~~~a~~~L~~ 515 (554)
+.|..++.++++.+|..|+.+|.+
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 889999999999999999998864
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.33 E-value=4.9e-08 Score=80.27 Aligned_cols=122 Identities=22% Similarity=0.216 Sum_probs=92.5
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhH
Q 008781 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (554)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (554)
....++.++.+|+++++.++..|+++|..+.. ..++.|+.+|.++++.+|..++++|+++. ++
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~--- 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE--- 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SH---
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH---
Confidence 34567889999999999999988888876642 12688999999999999999999999984 22
Q ss_pred HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008781 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L 360 (554)
..++.|+.++.++++.++..++++|+++.. ...++.|..+++++++.++..++.+|.++
T Consensus 73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 247889999999999999999999999841 22578899999999999999999988653
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.28 E-value=5.8e-05 Score=73.81 Aligned_cols=233 Identities=18% Similarity=0.179 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCC--ChHHHHHhhcCC----CCCcc-ccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 008781 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAP----PTSEA-DRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (554)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~Lv~lL~~~----~~~~~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (554)
.+.-++..|..+.+.+++|..+.+.+ .++.++.++... +.... ...+......++.+++.++.-++.+++..+
T Consensus 184 ~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~ 263 (480)
T 1ho8_A 184 TCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFAN 263 (480)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHH
Confidence 35578999999999999999998654 467776655422 10000 000111235889999999999998888888
Q ss_pred HHHHcCCh--HHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchh-----HHHHHhcCChHHHHHhhcC---CCH
Q 008781 152 LIVDNGAL--SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-----KTRVRMEGGIPPLVELLEF---TDT 221 (554)
Q Consensus 152 ~i~~~g~l--~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~-----~~~~~~~~~i~~L~~ll~~---~~~ 221 (554)
.+...+.. +.|+..++....+ .+.+.++.+|.|+....+.. ...+...++ +.++..|.. .|+
T Consensus 264 ~l~~~~i~~~~~L~~i~k~s~KE-------KvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~De 335 (480)
T 1ho8_A 264 ELVQKYLSDFLDLLKLVKITIKE-------KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDE 335 (480)
T ss_dssp HHHTTSHHHHHHHHHHHHHCCSH-------HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSH
T ss_pred HHHhcchHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcH
Confidence 88776643 5666777776554 99999999999999855311 222222334 445555543 455
Q ss_pred HHHHHHHHH-------HHHhc--------------cCCccchH---------HHHh--cCCHHHHHHhhcC---------
Q 008781 222 KVQRAAAGA-------LRTLA--------------FKNDENKN---------QIVE--CNALPTLILMLRS--------- 260 (554)
Q Consensus 222 ~v~~~a~~~-------L~~l~--------------~~~~~~~~---------~~~~--~~~~~~L~~ll~~--------- 260 (554)
++....-.. +..++ .-+|..+. .+.+ ..++..|+++|.+
T Consensus 336 dl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~ 415 (480)
T 1ho8_A 336 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA 415 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcccccccc
Confidence 544321111 11111 11222221 2221 2457788888873
Q ss_pred -CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHh
Q 008781 261 -EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (554)
Q Consensus 261 -~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 319 (554)
.++.+..-||.=++.++...|..+..+-+-|+=..++.++.+++++++.+|+.++..+-
T Consensus 416 s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 416 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 36788889999999999998988777777899999999999999999999999998764
No 83
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.26 E-value=0.00012 Score=81.37 Aligned_cols=382 Identities=10% Similarity=0.033 Sum_probs=205.4
Q ss_pred hhHHHHHHHHHHHHHhcc------------ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHH
Q 008781 75 ADRAAAKRATHVLAELAK------------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~------------~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (554)
.+..++..|+-.|.|... .++.+. .++. .++..+...+. .++.+.+.+++.
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~-~ik~----~ll~~l~~~~~------------~ir~~l~~~ia~ 111 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE-LIKK----EIVPLMISLPN------------NLQVQIGEAISS 111 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH-HHHH----HHHHHHHHSCH------------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH-HHHH----HHHHHHHhCCH------------HHHHHHHHHHHH
Confidence 456789999999998753 122222 2333 33444433333 899999999999
Q ss_pred hcC--ChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc------hhHHHH--HhcCChHHH
Q 008781 143 LAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKTRV--RMEGGIPPL 212 (554)
Q Consensus 143 l~~--~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~------~~~~~~--~~~~~i~~L 212 (554)
++. -|+. -.+.++.|+..+.+.+. ..+..++.++..++.... +.+..+ .-....+.+
T Consensus 112 ia~~d~p~~-----Wp~ll~~L~~~l~s~~~--------~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~l 178 (960)
T 1wa5_C 112 IADSDFPDR-----WPTLLSDLASRLSNDDM--------VTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178 (960)
T ss_dssp HHHHHSTTT-----CTTHHHHHHTTCCSSCT--------THHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCccc-----hhHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Confidence 882 2210 13457777777765543 677889999999987332 111111 011223333
Q ss_pred HHh-------hcCCCH---------HHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhcCC------C-------
Q 008781 213 VEL-------LEFTDT---------KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE------D------- 262 (554)
Q Consensus 213 ~~l-------l~~~~~---------~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~------~------- 262 (554)
+.+ +.++.. .+...++.+++.+...+ +....... ...++.+..++... +
T Consensus 179 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~ 257 (960)
T 1wa5_C 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHAS 257 (960)
T ss_dssp HHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCccccccc
Confidence 332 433211 23344677777765321 21111100 12234445555321 1
Q ss_pred --HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-----cCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCH
Q 008781 263 --SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (554)
Q Consensus 263 --~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~ 335 (554)
..++..++.+|..+....+..-... -..+++.+...+. .....+...++..+..++.. +.....+...+.+
T Consensus 258 ~~~~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l 335 (960)
T 1wa5_C 258 VLIKVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAM 335 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHH
Confidence 2578888999988875444321111 1234555566664 23467788888888887642 1111111001222
Q ss_pred HH-----HHHHhC-----------------------CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc---
Q 008781 336 RP-----LIEMLQ-----------------------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD--- 384 (554)
Q Consensus 336 ~~-----L~~~l~-----------------------~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~--- 384 (554)
+. ++..+. +.....|..|..+|..++...+ ..+. ...++.+...+.
T Consensus 336 ~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~ 412 (960)
T 1wa5_C 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYM 412 (960)
T ss_dssp HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhc
Confidence 22 222221 0112467788888888876432 1111 112233334444
Q ss_pred ---CCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhC-
Q 008781 385 ---SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA- 460 (554)
Q Consensus 385 ---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~- 460 (554)
+.++..++.|+.+++.++........-.. ....+++ +..-+...+++.+.++
T Consensus 413 ~~~~~~w~~reaal~algaia~~~~~~~~~~~--~~~~~~~----------------------l~~~l~~~v~p~l~~~~ 468 (960)
T 1wa5_C 413 SDPSKNWKFKDLYIYLFTALAINGNITNAGVS--STNNLLN----------------------VVDFFTKEIAPDLTSNN 468 (960)
T ss_dssp C----CHHHHHHHHHHHHHHHBSSCCBTTBCC--CBCTTCC----------------------HHHHHHHHTHHHHHCSS
T ss_pred cCcchhHHHHHHHHHHHHHHHHHhccccCCcc--ccccccc----------------------HHHHHHHHhHHHhcCCC
Confidence 56788999999999999754221110000 0000000 0000123345556666
Q ss_pred --CHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 461 --EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 461 --~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
++.+|..++++++.++..-. ... -...++.++..+.++++.|+..|+.+|.+++..
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~-~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLT-KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSC-HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCceehHHHHHHHHHHHhhCC-HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 89999999999999976521 111 223577888888888899999999999999875
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.25 E-value=0.00028 Score=78.38 Aligned_cols=443 Identities=10% Similarity=0.016 Sum_probs=230.6
Q ss_pred HHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccCh-------hhHHHH--HhCCChHHHHHh-------hcCCCCCcc
Q 008781 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE-------EVVNWI--VEGGAVPALVKH-------LQAPPTSEA 121 (554)
Q Consensus 58 ~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~--~~~g~v~~Lv~l-------L~~~~~~~~ 121 (554)
..|.++..|...++.+ +...+..++.+|..+++.- +.+..+ +-....+.++++ +..+..+..
T Consensus 120 ~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~ 197 (960)
T 1wa5_C 120 RWPTLLSDLASRLSND--DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKA 197 (960)
T ss_dssp TCTTHHHHHHTTCCSS--CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CH
T ss_pred chhHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 3456666666655443 3336677888888887621 122111 011224444443 333221000
Q ss_pred ccCCCcchHHHHHHHHHHHHHhc--CChhhH-HHHHHcCChHHHHHHHhccccC-------ccccchhHHHHHHHHHHHH
Q 008781 122 DRNLKPFEHEVEKGSAFALGLLA--VKPEHQ-QLIVDNGALSHLVNLLKRHMDS-------NCSRAVNSVIRRAADAITN 191 (554)
Q Consensus 122 ~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~-~~i~~~g~l~~L~~lL~~~~~~-------~~~~~~~~~~~~a~~~L~~ 191 (554)
. ...-.++...+++++..+. +.++.- +.+ ...++.+.+++....+. ......+.++..++.++..
T Consensus 198 ~---~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~ 272 (960)
T 1wa5_C 198 S---LNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQL 272 (960)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHH
Confidence 0 0000134445777777765 333321 111 12245566666542210 1111224677888888888
Q ss_pred HhhcCchhHHHHHhcCChHHHHHhhc-----CCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHH-----Hhhc--
Q 008781 192 LAHENSSIKTRVRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLR-- 259 (554)
Q Consensus 192 L~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~-----~ll~-- 259 (554)
++...+..-.. .....++..+..+. ..++.+...++..+..++. .+..+..+...+.++.++ ..+.
T Consensus 273 l~~~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~li~~~i~~~m~~~ 350 (960)
T 1wa5_C 273 YTTRYEDVFGP-MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNITEQIILPNVTLR 350 (960)
T ss_dssp HHHHCHHHHHH-HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHHHHHTHHHHHSCC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHHHHHHhHHhcCCC
Confidence 87644432111 11234455555554 3466788889999988875 222221111112233333 3222
Q ss_pred ---------------------CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc------cCChHHHHHHH
Q 008781 260 ---------------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSESQREAA 312 (554)
Q Consensus 260 ---------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~~~~a~ 312 (554)
++....|..|..+|..++...+. .+. ..+++.+...+. +.++..++.|.
T Consensus 351 ~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal 426 (960)
T 1wa5_C 351 EEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYI 426 (960)
T ss_dssp GGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 01124677888888888765432 111 123444555555 56678889999
Q ss_pred HHHHHHhcCCcccHHHHHHc-----CCHHH----HHHHhCCC---CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHH
Q 008781 313 LLLGQFAATDSDCKVHIVQR-----GAVRP----LIEMLQSP---DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 380 (554)
Q Consensus 313 ~~L~nl~~~~~~~~~~~~~~-----~~~~~----L~~~l~~~---~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~ 380 (554)
.+++.++.....+.. .... .+.+. ++..+.++ .+.+|..++|+++.++..-. .. .-...++.++
T Consensus 427 ~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-~l~~~l~~l~ 502 (960)
T 1wa5_C 427 YLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA-QLIELMPILA 502 (960)
T ss_dssp HHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-HHHHHHHHHH
T ss_pred HHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-HHHHHHHHHH
Confidence 999999753211110 0000 12222 33334555 88999999999999986531 11 1233567778
Q ss_pred HHhcCCChhHHHHHHHHHHHcccCCc---------chhHHHhhCccccccchhhhh-hh---------hHHHHHHHHHHH
Q 008781 381 KLLDSKNGSLQHNAAFALYGLADNED---------NVADFIRVGGVQKLQDGEFIV-QA---------TKDCVAKTLKRL 441 (554)
Q Consensus 381 ~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~i~~L~~~~~~~-~~---------~~~~~~~~~~~l 441 (554)
+.+.+++..|+..|+++|.+++...+ ....+. ..++.+++..+.. +. ..+.+..++..+
T Consensus 503 ~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~--p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~v 580 (960)
T 1wa5_C 503 TFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS--NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV 580 (960)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT--TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHH
T ss_pred HHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh--hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHH
Confidence 88888889999999999999886421 111111 2233333322211 00 112333333333
Q ss_pred HHHH-------hhchHHHHHHHHhh-----CCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhCCCChhHHH
Q 008781 442 EEKI-------HGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQL 507 (554)
Q Consensus 442 ~~~~-------~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~ 507 (554)
.... -..+++.|...+.. +++..+..++.+|+.++.. ++... -.....++.+...+.....+...
T Consensus 581 v~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~ 659 (960)
T 1wa5_C 581 LQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIP 659 (960)
T ss_dssp HHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHH
Confidence 2221 22344555554432 4667777778888888543 22222 23445678888888877677788
Q ss_pred HHHHHHHHHHhhc
Q 008781 508 DGAVALFKLANKA 520 (554)
Q Consensus 508 ~a~~~L~~L~~~~ 520 (554)
.+...+..+....
T Consensus 660 ~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 660 YVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887654
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.03 E-value=0.00027 Score=65.70 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=132.4
Q ss_pred HHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCc
Q 008781 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (554)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 239 (554)
..++.-|.+.+. ..++.++.-|..+...+......|...+|+..|+......+.+.+.+++.+|.++.. ..
T Consensus 121 ~~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v 191 (339)
T 3dad_A 121 NAILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FV 191 (339)
T ss_dssp HHHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SH
T ss_pred HHHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-cc
Confidence 334455555444 778889999998666678888889999999999999999999999999999999987 44
Q ss_pred cchHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHc----------CCHHHHHHHhc---cCCh
Q 008781 240 ENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------GALQPVIGLLS---SCCS 305 (554)
Q Consensus 240 ~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----------~~l~~L~~lL~---~~~~ 305 (554)
..-..++ ...++..+..++.+.+..|.+.|+..|..++..++.....+... ..++.|+.+|. +.+.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 4444444 55678889999998899999999999999988776544333321 24789999997 6778
Q ss_pred HHHHHHHHHHHHHhcCCc--ccHHH----HHHcCCHHHHHHHhCCC--CHHHHH
Q 008781 306 ESQREAALLLGQFAATDS--DCKVH----IVQRGAVRPLIEMLQSP--DVQLRE 351 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~--~~~~~----~~~~~~~~~L~~~l~~~--~~~v~~ 351 (554)
+++..+...+-.+....+ +.+.. +-+.|+-..+...++.. ++++++
T Consensus 272 elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 888888876655544333 21222 22345555666667653 555443
No 86
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.00 E-value=0.00025 Score=65.92 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=122.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (554)
..+++.|.+.+...++.++.-|..+...+......++..+++..|+++....+...+..++++|.+|..+.......+-.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 34556666777888888999999855557888999999999999999999999999999999999997664444233334
Q ss_pred cCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHc----------CCHHHHHHHhC---CCCHHHHHHHHHH
Q 008781 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR----------GAVRPLIEMLQ---SPDVQLREMSAFA 356 (554)
Q Consensus 290 ~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~----------~~~~~L~~~l~---~~~~~v~~~a~~~ 356 (554)
..++..+..++.+....+.+.|+..|..++..++.....+.+. ..+..++.+|+ +.+.+++.++...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5688899999998888999999999999987666544433321 24788999997 6789999999888
Q ss_pred HHHHhcCCCc
Q 008781 357 LGRLAQDMHN 366 (554)
Q Consensus 357 L~~L~~~~~~ 366 (554)
+..+....+.
T Consensus 281 IN~lL~~apd 290 (339)
T 3dad_A 281 INKTLAALPD 290 (339)
T ss_dssp HHHHHHHCSS
T ss_pred HHHHHhcCCC
Confidence 8877655443
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.96 E-value=0.00076 Score=72.91 Aligned_cols=291 Identities=13% Similarity=0.095 Sum_probs=187.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccC---hhhHHHHHH
Q 008781 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS---PNIKKEVLA 289 (554)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~---~~~~~~~~~ 289 (554)
++-+...+..-+..++..+..+..+..... ....+++..+.+.+.+.... +.|+.++..|+... +.....++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~- 94 (986)
T 2iw3_A 20 FQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV- 94 (986)
T ss_dssp HHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred HhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence 333443333444566667777665321111 11135677888888765444 88999999998532 12223333
Q ss_pred cCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHhcCCCcch
Q 008781 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQA 368 (554)
Q Consensus 290 ~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~~~~~~~~ 368 (554)
+.++.++..+.+....++..|..++..+...-+.... ..++|.|+..+.+ ..++.+..|+.++..|+.....+.
T Consensus 95 -~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 95 -QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 6899999999888888888887777766543333221 3468899998875 479999999999999997553333
Q ss_pred hhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHH----
Q 008781 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK---- 444 (554)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~---- 444 (554)
...-...+|.+...+.+..++|...|..++..+|..-.|... ...++.|++....+....+|+ ..+...
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~----~~l~~~tfv~ 242 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTEVPETV----HLLGATTFVA 242 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHH----HHHTTCCCCS
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHH----HHhhcCeeEe
Confidence 333446788899999999999999999999998765444321 012334444333344444443 223221
Q ss_pred -Hhhch----HHHHHHHHhhCCHHHHHHHHHHHHhhcCC---chhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHHH
Q 008781 445 -IHGRV----LNHLLYLMRVAEKGVQRRVALALAHLCSP---DDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFK 515 (554)
Q Consensus 445 -~~~~~----l~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~ 515 (554)
++... +|.|..-|+.....+++.++-++.|+|.= +.....| -...+|.+....+ -.+|++|..|.+++..
T Consensus 243 ~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 243 EVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKT 321 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence 12223 44555555667999999999999999754 2222222 3346777777666 5899999999999998
Q ss_pred HHhhcC
Q 008781 516 LANKAT 521 (554)
Q Consensus 516 L~~~~~ 521 (554)
|.+...
T Consensus 322 l~~~~~ 327 (986)
T 2iw3_A 322 LRRVGN 327 (986)
T ss_dssp HHHHHT
T ss_pred HHHhhc
Confidence 876543
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.68 E-value=0.0096 Score=64.46 Aligned_cols=262 Identities=19% Similarity=0.175 Sum_probs=173.9
Q ss_pred HHHHHhhhhccchHhhHHHHHHHHHHHHHhccC----hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHH
Q 008781 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (554)
Q Consensus 61 ~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (554)
.++..|.+........ ..|+..+..++.. +..--.++ +.+|.++....+... .|+..|
T Consensus 54 ~~~~~~~~~~~~k~~~----~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~------------~v~~aa 115 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA----ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK------------EIQSVA 115 (986)
T ss_dssp HHHHHHHHHHTSHHHH----HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH------------HHHHHH
T ss_pred hHHHHHHHHHhccCCH----HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch------------HHHHHH
Confidence 4555555554433322 5778888888852 22222222 567777777766555 888888
Q ss_pred HHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 008781 137 AFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (554)
Q Consensus 137 ~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ 214 (554)
..++..+. .+++.. ...+|.|+..|..... |..+..|+.++..++...+ .+-...-..++|.+-+
T Consensus 116 ~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~-~~~~~~~~~~~p~~~~ 182 (986)
T 2iw3_A 116 SETLISIVNAVNPVAI-----KALLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAK-DQVALRMPELIPVLSE 182 (986)
T ss_dssp HHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhH-HHHHHhccchhcchHh
Confidence 87877777 555443 2237899999966543 5899999999999998554 3333444678899999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH
Q 008781 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (554)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 294 (554)
.+.+..+++..+|..++..+|. --.|++. ...+|.|++.+.+++. ...++..|+.-+.-.+.....+ +=.+|
T Consensus 183 ~~~d~k~~v~~~~~~~~~~~~~-~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p 254 (986)
T 2iw3_A 183 TMWDTKKEVKAAATAAMTKATE-TVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVP 254 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHGG-GCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHh-cCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHH
Confidence 9999999999999999999986 2333322 2468999999988754 4444444444333222111111 11456
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccH-HHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHHHh
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 361 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~L~ 361 (554)
.|..-|......+++.++.++.|+|.--.+-+ ....-..++|-+-+.... .+|++|+.+..++..|-
T Consensus 255 ~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 255 LLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 66677777788899999999999996433321 222234566777666653 78999999888888874
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.65 E-value=0.037 Score=61.40 Aligned_cols=334 Identities=12% Similarity=0.074 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 008781 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (554)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (554)
++..++.++.+++.++...... ....++.++..+..-..+ ...++..++++++.++..-..... .-...
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~-----~~~vr~~~~~~l~~~~~~l~~~~~--~l~~v 530 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISIS-----NVQLADTVMFTIGALSEWLADHPV--MINSV 530 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCC-----SHHHHHHHHHHHHHTHHHHHHCHH--HHTTT
T ss_pred chHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHhCHH--HHHHH
Confidence 3488999999999999321110 023345555555332211 117899999999999863222111 23578
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHh--cCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCh-hh
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NI 283 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~-~~ 283 (554)
++.++..+.+ +.++..|+.++.+++.... ..+.. ..+++.+..++.. -+...+..+..+++.++...+ +.
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECK---YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 8888888854 7899999999999996322 22211 1234444555554 357889999999999876433 32
Q ss_pred HHHHHHcCCHHHHHHHhc----cC-ChHHHH---HHHHHHHHHhcCC----c-----------------ccHHHHHHcCC
Q 008781 284 KKEVLAAGALQPVIGLLS----SC-CSESQR---EAALLLGQFAATD----S-----------------DCKVHIVQRGA 334 (554)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~----~~-~~~~~~---~a~~~L~nl~~~~----~-----------------~~~~~~~~~~~ 334 (554)
....+ ..+++.+...+. .. +++.+. ....+|+.+...- + .....-....+
T Consensus 606 ~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (963)
T 2x19_B 606 ILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV 684 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH
Confidence 22222 234555544442 22 344443 2333444443210 0 01111123345
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh----cC-CChhHHHHHHHHHHHccc----
Q 008781 335 VRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----DS-KNGSLQHNAAFALYGLAD---- 403 (554)
Q Consensus 335 ~~~L~~~l~--~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll----~~-~~~~v~~~a~~~L~~l~~---- 403 (554)
++.+..++. ..++.+.+.++.++..++..-... + ...+++++..+ .. ..+. .+.++..+..
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~--~--~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~ 756 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD--F--APMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST--T--GGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc--c--cccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCC
Confidence 666666665 356789999999999986432211 1 12355544433 11 2222 2233333322
Q ss_pred CCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhh---CCHHHHHHHHHHHHhhcCCch
Q 008781 404 NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV---AEKGVQRRVALALAHLCSPDD 480 (554)
Q Consensus 404 ~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~ 480 (554)
.+.....+. .. -..++..++.++.. ..|+++......+..+.....
T Consensus 757 ~~~~~~~~~-----------------------~~--------l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~ 805 (963)
T 2x19_B 757 EPAHFPPIE-----------------------AL--------FLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKP 805 (963)
T ss_dssp CTTTCHHHH-----------------------HH--------HHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred CcchHHHHH-----------------------HH--------HHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCc
Confidence 110000000 00 01123444444442 468898888888888753321
Q ss_pred hhHHHHHc-----CcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 481 QRTIFIDG-----GGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 481 ~~~~~~~~-----~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
.. +... ..++.++..+...+..+...+...+..+....
T Consensus 806 ~~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 806 DL--FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp GG--GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred HH--HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 11 1111 13455566677888899999999999988753
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.56 E-value=0.019 Score=63.77 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=88.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh---CCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHH
Q 008781 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV 377 (554)
Q Consensus 301 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l---~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~ 377 (554)
.+.++..++.++++++.++....... ...++.++..+ .++++.++..++++++.++..-...... -...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHH
Confidence 45678889999999999985533211 22344444443 3457889999999999998532211222 236788
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008781 378 PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM 457 (554)
Q Consensus 378 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll 457 (554)
.++..+++ +.|+..|+.++.+++.... ..+. .. -..++..|..++
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~--p~-----------------------------~~~il~~l~~~l 577 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECK--YDLP--PY-----------------------------AANIVAVSQDVL 577 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCT--TT-----------------------------HHHHHHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHH--hh-----------------------------HHHHHHHHHHHh
Confidence 88888854 8899999999999985321 1111 00 112355666666
Q ss_pred hh--CCHHHHHHHHHHHHhhcC
Q 008781 458 RV--AEKGVQRRVALALAHLCS 477 (554)
Q Consensus 458 ~~--~~~~v~~~a~~~L~~l~~ 477 (554)
.. -+...+..+..+++.++.
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHT
T ss_pred ccCCCChHHHHHHHHHHHHHHh
Confidence 64 356788888888888854
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.51 E-value=0.018 Score=64.09 Aligned_cols=216 Identities=11% Similarity=0.077 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (554)
..++.++.+++.++....... ...++.++.++..-... +....++..++++++.++..-...... -...++
T Consensus 479 ~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~---d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~ 549 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYE---KLNVKLLGTALETMGSYCNWLMENPAY--IPPAIN 549 (971)
T ss_dssp HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTT---TSCHHHHHHHHHHHHHTHHHHC----C--HHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcc---ccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHH
Confidence 788999999999993322111 23455555544222100 001289999999999998632221111 123456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHh--cCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCh-hhHH
Q 008781 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKK 285 (554)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~-~~~~ 285 (554)
.++..+ + +.++..|+.++.+++... ...+.. ..++..+..++.. -+...+..+..+++.++...+ +...
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~---~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDC---QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 666666 2 678999999999999632 222221 2455666667766 367889999999999876432 2222
Q ss_pred HHHHcCCHHHHHHH----hccC--ChHHHHHHHHHHHHHh---cC-Cc---c--------cHHHHHHcCCHHHHHHHhCC
Q 008781 286 EVLAAGALQPVIGL----LSSC--CSESQREAALLLGQFA---AT-DS---D--------CKVHIVQRGAVRPLIEMLQS 344 (554)
Q Consensus 286 ~~~~~~~l~~L~~l----L~~~--~~~~~~~a~~~L~nl~---~~-~~---~--------~~~~~~~~~~~~~L~~~l~~ 344 (554)
..+ ..+++.++.. +... +.+.+.....++..++ .. .. . ....-....+++.+..++..
T Consensus 624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 211 2234444443 3332 2323334444443333 10 00 0 00112234678888887763
Q ss_pred --CCHHHHHHHHHHHHHHhc
Q 008781 345 --PDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 345 --~~~~v~~~a~~~L~~L~~ 362 (554)
.+..+.+.++++++.++.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 477999999999999875
No 92
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.47 E-value=0.047 Score=60.38 Aligned_cols=336 Identities=13% Similarity=0.084 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH-HHHhccccCccccchhHHHHHHHHHHHHHhhcC---c--hhHHHHH
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV-NLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN---S--SIKTRVR 204 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~-~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~---~--~~~~~~~ 204 (554)
++...++.+++....--. -..+...+.++.+. .++..+ +++..|+.+|..+...+ + .....+.
T Consensus 210 ~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l~~~~L~~~----------~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~ 278 (1023)
T 4hat_C 210 SLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMTSP----------DTRAITLKCLTEVSNLKIPQDNDLIKRQTV 278 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHHSH----------HHHHHHHHHHHHHHTSCCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-HHHhcchhHHHHHHHHHcCCH----------HHHHHHHHHHHHHHccccCCchHHHHHHHH
Confidence 778889999988772111 24566778899999 888654 89999999999998632 2 1221111
Q ss_pred h--cCChHHH-----------HHhh---cCCCHHHHHHHHHHHHHhccC-------CccchHHHHhcCCHHHHHHhhcCC
Q 008781 205 M--EGGIPPL-----------VELL---EFTDTKVQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSE 261 (554)
Q Consensus 205 ~--~~~i~~L-----------~~ll---~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~~~~L~~ll~~~ 261 (554)
. .+.+..+ ...+ ...|.+....-+..+..+... ++..+..+ . .++..|+..-..+
T Consensus 279 ~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l-~-~~l~~Ll~~~~~~ 356 (1023)
T 4hat_C 279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL-L-NAHQYLIQLSKIE 356 (1023)
T ss_dssp HHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH-H-HHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH-H-HHHHHHHHhhCCC
Confidence 0 0111111 1111 123455555566666544431 11111111 1 1234555555567
Q ss_pred CHHHHHHHHHHHHHHhcc---ChhhH---HHHHHcCCHHHHHHHhccCC--------------------hH-HHHHHH-H
Q 008781 262 DSAIHYEAVGVIGNLVHS---SPNIK---KEVLAAGALQPVIGLLSSCC--------------------SE-SQREAA-L 313 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~---~~~~~---~~~~~~~~l~~L~~lL~~~~--------------------~~-~~~~a~-~ 313 (554)
+.++-..++.....++.. .+..+ ..+. ..+++.++.-+.-+. .+ ..-... .
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~-~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd 435 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH-HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHH
Confidence 888878888776666531 00000 1111 123344444333222 00 000011 2
Q ss_pred HHHHHhcCCc-ccHHHHHHcCCHHHHHHHhCC--CCHHHHHHHHHHHHHHhcCCCcc-hhhhhcCCHHHHHHHhcC----
Q 008781 314 LLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS---- 385 (554)
Q Consensus 314 ~L~nl~~~~~-~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~l~~L~~ll~~---- 385 (554)
+|..++.-.. +... -+++.+.+.+.+ .++..+++++++++.++...... ..-.-..+++.|+.++..
T Consensus 436 ~L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~ 510 (1023)
T 4hat_C 436 VLVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGK 510 (1023)
T ss_dssp HHHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccC
Confidence 3333321111 1111 123333334443 68999999999999998655332 222223456677777753
Q ss_pred -CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHH
Q 008781 386 -KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGV 464 (554)
Q Consensus 386 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v 464 (554)
....++..++++++.++.--.....++ ..++..|+..|..+++.+
T Consensus 511 d~k~~v~~t~~~~lGry~~wl~~~~~~L----------------------------------~~vl~~L~~~l~~~~~~v 556 (1023)
T 4hat_C 511 DNKAVVASDIMYVVGQYPRFLKAHWNFL----------------------------------RTVILKLFEFMHETHEGV 556 (1023)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHCHHHH----------------------------------HHHHHHHHHHTTCSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHH----------------------------------HHHHHHHHHHhhcCCHHH
Confidence 234466678889988765321111111 113666777777788999
Q ss_pred HHHHHHHHHhhcCCchhhHHHHH----------cCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 465 QRRVALALAHLCSPDDQRTIFID----------GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 465 ~~~a~~~L~~l~~~~~~~~~~~~----------~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
+..|++++.+||.. ++..+.. ...+..+......-.+..+..+..++..+....+
T Consensus 557 ~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 557 QDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999853 3333321 1122333444444556666777888887777654
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.43 E-value=0.0063 Score=67.68 Aligned_cols=289 Identities=9% Similarity=0.003 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHhhcCch--hHHHHHhcCChHHHHHh-------hcCCCH---HHHHHHHHHHHHhccCCccc------
Q 008781 180 SVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVEL-------LEFTDT---KVQRAAAGALRTLAFKNDEN------ 241 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~i~~L~~l-------l~~~~~---~v~~~a~~~L~~l~~~~~~~------ 241 (554)
+++..|+.++..+....+. ....+ ...++.++.+ +...+. ......+..+..+.......
T Consensus 259 ~~~~~a~~~l~~i~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 336 (971)
T 2x1g_F 259 ELAESCLKTMVNIIIQPDCHNYPKTA--FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGIT 336 (971)
T ss_dssp HHHHHHHHHHHHHHHCSGGGGCHHHH--HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccccHHHH--HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999874321 11111 1223333332 233342 66666677777666422211
Q ss_pred ------hHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHHhccC---------hhhHHHH--HHcCCHHHHHHH
Q 008781 242 ------KNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS---------PNIKKEV--LAAGALQPVIGL 299 (554)
Q Consensus 242 ------~~~~~~~~~~~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~---------~~~~~~~--~~~~~l~~L~~l 299 (554)
...+. .+++.++..... .++++...++..+..++... ......+ .-..+++.++..
T Consensus 337 ~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 414 (971)
T 2x1g_F 337 SADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK 414 (971)
T ss_dssp TCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 345555655533 47788999999888875411 1111111 111344555555
Q ss_pred hccCCh---------------HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC-----CCHHHHHHHHHHHHH
Q 008781 300 LSSCCS---------------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGR 359 (554)
Q Consensus 300 L~~~~~---------------~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~-----~~~~v~~~a~~~L~~ 359 (554)
+.-++. ..++.+..+|..++....+. +.. -+++.+-..+.+ .++..++.++.+++.
T Consensus 415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ 490 (971)
T 2x1g_F 415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQS 490 (971)
T ss_dssp TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 532211 24556666777776433211 111 122333333332 577899999999999
Q ss_pred HhcCCCcchhhhhcCCHHHHHHHh---c--CCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHH
Q 008781 360 LAQDMHNQAGIAHNGGLVPLLKLL---D--SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV 434 (554)
Q Consensus 360 L~~~~~~~~~l~~~~~l~~L~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~ 434 (554)
++....... ...++.++.++ . +.++.++..++++++.++..-.... ..+
T Consensus 491 iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-----~~l----------------- 544 (971)
T 2x1g_F 491 VAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-----AYI----------------- 544 (971)
T ss_dssp TTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------CH-----------------
T ss_pred HHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-----HHH-----------------
Confidence 986543221 12344444433 3 3478999999999999874321100 111
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHH--HcCcHHHHHHhhCC--CChhHHHHHH
Q 008781 435 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI--DGGGLELLLGLLGS--TNPKQQLDGA 510 (554)
Q Consensus 435 ~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~--~~~~v~~~a~ 510 (554)
..+++.|+..+ + +.++..|+.++.++|..- +..+. -...+..|..++.. -+...+..+.
T Consensus 545 ------------~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 545 ------------PPAINLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp ------------HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred ------------HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 12466777777 2 789999999999998432 22221 22345566666665 3467788888
Q ss_pred HHHHHHHhh
Q 008781 511 VALFKLANK 519 (554)
Q Consensus 511 ~~L~~L~~~ 519 (554)
.++..++..
T Consensus 608 ~ai~~i~~~ 616 (971)
T 2x1g_F 608 FSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888764
No 94
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.42 E-value=0.0018 Score=57.37 Aligned_cols=179 Identities=13% Similarity=0.173 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHH
Q 008781 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVD 155 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~ 155 (554)
.-...|+..|..++++|+.+..+.++.+.-.|-.+|+..+... ||+ -+|..++.++|.+. ++++.-.-+..
T Consensus 71 nRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r------~fE-~LRLtsLGVIgaLvK~dd~eVi~fLL~ 143 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTR------PFE-YLRLTSLGVIGALVKTDEQEVINFLLT 143 (268)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSH------HHH-HHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCC------cch-hhhhhHHHHHHHHhccCcHHHHHHHHh
Confidence 3456777778888999999999999999999999999877632 222 68999999999999 78888888889
Q ss_pred cCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHH------HH-HhcCChHH-HHHhhcCCCHHHHHHH
Q 008781 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RV-RMEGGIPP-LVELLEFTDTKVQRAA 227 (554)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~------~~-~~~~~i~~-L~~ll~~~~~~v~~~a 227 (554)
.+++|..++.+...+. -.+..|..++..+..++....- .| .-...+.. +..+.+.+++.+.++.
T Consensus 144 tEiiplCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhi 215 (268)
T 2fv2_A 144 TEIIPLCLRIMESGSE--------LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHV 215 (268)
T ss_dssp TTHHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhHHHHHHHHHhhccH--------HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 9999999999998876 6677788888887764432211 11 11122322 3334567889999999
Q ss_pred HHHHHHhccCCccchHHHHhc-------CCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008781 228 AGALRTLAFKNDENKNQIVEC-------NALPTLILMLRSEDSAIHYEAVGVIGNL 276 (554)
Q Consensus 228 ~~~L~~l~~~~~~~~~~~~~~-------~~~~~L~~ll~~~~~~v~~~a~~~L~~L 276 (554)
.+|-..++. ++..++.+... |.+. .++ .+|+.++.+-...+.|+
T Consensus 216 ircYlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 216 VRCYLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 999999997 77777766542 2222 222 35778888877777776
No 95
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.41 E-value=0.036 Score=61.14 Aligned_cols=258 Identities=14% Similarity=0.077 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHhcc--Chh----hHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-C-Ch
Q 008781 76 DRAAAKRATHVLAELAK--NEE----VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-KP 147 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~----~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-~~ 147 (554)
+..++..|+.+|.+..+ +++ .+. .++..++..+.+.-.... .+-++.+.+.++..+. . -|
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~-~lr~~ll~~l~~~~~~~~-----------~~~IrnKL~~~la~l~~~~~p 123 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQ-MIRDSVWSYIKELSFLDE-----------PAYISNAVQHLLTLLFLQLYP 123 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHH-HHHHHHHHHHHHCCSTTS-----------CTHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHH-HHHHHHHHHHHHhcCCCC-----------cHHHHHHHHHHHHHHHHHhCc
Confidence 56788899998888665 233 333 333334444443100011 1278888888888887 2 22
Q ss_pred hhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc---------------hhHHHHHhcC---Ch
Q 008781 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------------SIKTRVRMEG---GI 209 (554)
Q Consensus 148 ~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~---------------~~~~~~~~~~---~i 209 (554)
+ .-.+.++.++.++...+.. ......+.+|..++.+-. ..+..+.... ++
T Consensus 124 ~-----~Wp~~i~~l~~~~~~~~~~-------~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~ 191 (980)
T 3ibv_A 124 S-----NWNDFFASLQGVIAASSQS-------EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV 191 (980)
T ss_dssp T-----TCTTHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred c-----cCchHHHHHHHHhcCCChh-------HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence 2 1124566777777654220 233344445554433200 0122222211 12
Q ss_pred HHHHHhh----cCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh--hh
Q 008781 210 PPLVELL----EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--NI 283 (554)
Q Consensus 210 ~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--~~ 283 (554)
+....++ .+.++.++..++.++..... --....+.+.+.++.+..++.+ ++++..|+.||..+..... +.
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~--wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~ 267 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS--WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLE 267 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHh--hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhh
Confidence 3333333 34678899999999999885 2334556667788888888865 7899999999999976432 33
Q ss_pred HHHHHHcCCHHHHHHHhc--cCChHHHHHHHHHHHHHh------cCCc-----ccHHH--HHHcCCHHHHHHHhCCCCHH
Q 008781 284 KKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFA------ATDS-----DCKVH--IVQRGAVRPLIEMLQSPDVQ 348 (554)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~--~~~~~~~~~a~~~L~nl~------~~~~-----~~~~~--~~~~~~~~~L~~~l~~~~~~ 348 (554)
+..++..=.+...+..+. ..+.+..+..+..+..++ ...+ +.+.. -.-.++++.++..+..++.+
T Consensus 268 k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~de 347 (980)
T 3ibv_A 268 KLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDE 347 (980)
T ss_dssp HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHH
T ss_pred HHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchh
Confidence 333332201111122222 345565554444333221 1111 11111 11136888899999888888
Q ss_pred HHHHHHHHHHHHh
Q 008781 349 LREMSAFALGRLA 361 (554)
Q Consensus 349 v~~~a~~~L~~L~ 361 (554)
+...++..+..+.
T Consensus 348 Vs~~t~~Fw~~~l 360 (980)
T 3ibv_A 348 TSTAVFPFLSDLL 360 (980)
T ss_dssp HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887777777665
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.39 E-value=0.036 Score=62.04 Aligned_cols=334 Identities=13% Similarity=0.072 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHcCChHHHH-HHHhccccCccccchhHHHHHHHHHHHHHhhcC--ch---hHHHH
Q 008781 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLV-NLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN--SS---IKTRV 203 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~-~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~--~~---~~~~~ 203 (554)
+++..++.++.+.. .-+- ..+.....++.+. .++. +. +++..|+.+|..+.... +. ....+
T Consensus 210 ~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l~--~~--------~~~~~a~~~L~~i~~~~~~~~~~~~~~~~ 277 (1049)
T 3m1i_C 210 SLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMT--SP--------DTRAITLKCLTEVSNLKIPQDNDLIKRQT 277 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHH--SH--------HHHHHHHHHHHHHHHCCCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhCC--CH--------hHHHHHHHHHHHHHhCCCCcchhhHHHHH
Confidence 78899999998866 2221 2244456666666 3443 22 88999999999998642 11 11111
Q ss_pred Hh--cCChHHHHH-----------hh---cCCCHHHHHHHHHHHHHhcc-------CCccchHHHHhcCCHHHHHHhhcC
Q 008781 204 RM--EGGIPPLVE-----------LL---EFTDTKVQRAAAGALRTLAF-------KNDENKNQIVECNALPTLILMLRS 260 (554)
Q Consensus 204 ~~--~~~i~~L~~-----------ll---~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~~~~L~~ll~~ 260 (554)
.. .+.+..+.. .. .+.+.+.....+..+..+.. ..+.....+ ..+++.++.....
T Consensus 278 ~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~ 355 (1049)
T 3m1i_C 278 VLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKI 355 (1049)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcC
Confidence 10 111222211 01 12234444445555443332 111122222 1356677776677
Q ss_pred CCHHHHHHHHHHHHHHhc----cCh--hhHHHHHHcCCHHHHHHHhccCC-------------------h---HHHHHHH
Q 008781 261 EDSAIHYEAVGVIGNLVH----SSP--NIKKEVLAAGALQPVIGLLSSCC-------------------S---ESQREAA 312 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~----~~~--~~~~~~~~~~~l~~L~~lL~~~~-------------------~---~~~~~a~ 312 (554)
++.++...++..+..++. ... .....++ ..+++.++..+.-++ . ..++.+.
T Consensus 356 ~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~ 434 (1049)
T 3m1i_C 356 EERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER 434 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHH
Confidence 788999999988888765 111 1111111 123444444442110 0 1233455
Q ss_pred HHHHHHhcCCcccHHHHHHcCCHHHHHHHhC--CCCHHHHHHHHHHHHHHhcCCCcc-hhhhhcCCHHHHHHHhcC----
Q 008781 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS---- 385 (554)
Q Consensus 313 ~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~L~~~~~~~-~~l~~~~~l~~L~~ll~~---- 385 (554)
.+|..++...+.. +. .-+.+.+-..+. ..++..++.++++++.++..-... ..-.-...++.+..+...
T Consensus 435 ~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~ 510 (1049)
T 3m1i_C 435 EVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGK 510 (1049)
T ss_dssp HHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSH
T ss_pred HHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccc
Confidence 5676666322211 11 112344444454 367889999999999987542211 101111123333333221
Q ss_pred -CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhCCHHH
Q 008781 386 -KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGV 464 (554)
Q Consensus 386 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~~~~v 464 (554)
+++.++..++++++.++..-..... .-..+++.++..+.++++.|
T Consensus 511 ~~~~~v~~~~~~~lgry~~~~~~~~~----------------------------------~l~~vl~~ll~~l~~~~~~V 556 (1049)
T 3m1i_C 511 DNKAVVASDIMYVVGQYPRFLKAHWN----------------------------------FLRTVILKLFEFMHETHEGV 556 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHH----------------------------------HHHHHHHHHHHHTTSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHHH----------------------------------HHHHHHHHHHHHhcCCCHHH
Confidence 2344555678888887632111111 11124677788888889999
Q ss_pred HHHHHHHHHhhcCCchhhHHHH----------HcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 465 QRRVALALAHLCSPDDQRTIFI----------DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 465 ~~~a~~~L~~l~~~~~~~~~~~----------~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
+..|+.++.++|.. ++..+. -...+..|..++..-+.+.......++..+...
T Consensus 557 ~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 557 QDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 99999999999863 232232 112233444455544444455556666666544
No 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.30 E-value=0.14 Score=57.39 Aligned_cols=377 Identities=13% Similarity=0.075 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHhccC--h-hhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc-CCh----h-
Q 008781 78 AAAKRATHVLAELAKN--E-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP----E- 148 (554)
Q Consensus 78 ~~~~~a~~~L~~l~~~--~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~----~- 148 (554)
.++...+.+++.++.. | .| .+.++.|+..++ .+. ..+..++.+|..++ .-. +
T Consensus 115 ~i~~kl~~~ia~Ia~~~~p~~W------p~ll~~L~~~~~-~~~------------~~~~~~l~~L~~l~eev~~~~~~~ 175 (1049)
T 3m1i_C 115 NLINKSDLTLVQILKQEWPQNW------PEFIPELIGSSS-SSV------------NVCENNMIVLKLLSEEVFDFSAEQ 175 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTC------TTHHHHHHHHHT-TCH------------HHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHHc-cCh------------HHHHHHHHHHHHHHHHHHHhcchh
Confidence 4555556666665552 2 12 245777788775 222 45566677777666 111 0
Q ss_pred ---hH-----HHHHHc--CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 008781 149 ---HQ-----QLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (554)
Q Consensus 149 ---~~-----~~i~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (554)
.| +.+... .+++.+..++....+ .+++..++.++.+....-+. ..+.....++.+.+.+.
T Consensus 176 ~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~-------~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l- 245 (1049)
T 3m1i_C 176 MTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSS-------SSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM- 245 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC-
Confidence 11 222221 123333444443321 17888999999887663332 22444566666663222
Q ss_pred CCHHHHHHHHHHHHHhccCCccch-----HHHHh--cCCHHHHHH-hh-------------cCCCHHHHHHHHHHHHHHh
Q 008781 219 TDTKVQRAAAGALRTLAFKNDENK-----NQIVE--CNALPTLIL-ML-------------RSEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~--~~~~~~L~~-ll-------------~~~~~~v~~~a~~~L~~L~ 277 (554)
.++.++..|+.+|..+........ ..+.. .+++..+.. ++ .+.+.+.....+..+..+.
T Consensus 246 ~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~ 325 (1049)
T 3m1i_C 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYL 325 (1049)
T ss_dssp HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 378899999999999986421111 11111 112222211 11 1224444455555554443
Q ss_pred cc-------ChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcC---CcccHHHH--HHcCCHHHHHHHhCCC
Q 008781 278 HS-------SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT---DSDCKVHI--VQRGAVRPLIEMLQSP 345 (554)
Q Consensus 278 ~~-------~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~---~~~~~~~~--~~~~~~~~L~~~l~~~ 345 (554)
.. .+.....+ ..+++.++.+....+.++...+...+..++.. .+...... .-..+++.++..+.-+
T Consensus 326 ~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ 403 (1049)
T 3m1i_C 326 ARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRP 403 (1049)
T ss_dssp HHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 21 11111111 23456666666666778888888777777641 11111100 1112344444444211
Q ss_pred -------------------CH---HHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc--CCChhHHHHHHHHHHHc
Q 008781 346 -------------------DV---QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFALYGL 401 (554)
Q Consensus 346 -------------------~~---~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l 401 (554)
+. ..+..+..+|..++..... .+ -.-..+.+-+.+. ..++..++.++++++.+
T Consensus 404 ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~--~~-l~~v~~~l~~~l~~~~~~W~~~eaal~algsi 480 (1049)
T 3m1i_C 404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI--DT-EEIMISKLARQIDGSEWSWHNINTLSWAIGSI 480 (1049)
T ss_dssp TTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH--HH-HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHT
T ss_pred cceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH--HH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 11 2344566666666632111 00 0111223333443 35788999999999988
Q ss_pred ccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHh-----hCCHHHHHHHHHHHHhhc
Q 008781 402 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLC 476 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~~l~ 476 (554)
+....... +.. .-..+++.++.+.. ++++.++..++++++.++
T Consensus 481 a~~~~~~~---e~~-----------------------------~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~ 528 (1049)
T 3m1i_C 481 SGTMSEDT---EKR-----------------------------FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYP 528 (1049)
T ss_dssp TTSSCHHH---HHH-----------------------------HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCH
T ss_pred hcccCchh---hHH-----------------------------HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence 75422110 000 01112344444332 234556657889999886
Q ss_pred CCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcC
Q 008781 477 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (554)
Q Consensus 477 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (554)
..-.....+.. ..++.|...+.++++.|+..|+.++.+++.+..
T Consensus 529 ~~~~~~~~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 529 RFLKAHWNFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHCHHHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 44221112222 356777778888899999999999999998753
No 98
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.21 E-value=0.023 Score=52.76 Aligned_cols=205 Identities=15% Similarity=0.163 Sum_probs=152.6
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccc----hHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 008781 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~ 277 (554)
+...+.+..|+..+..-+-+.+..+..+..++....... ...+... .+.+..++. -+++++-..+-..|....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC--HHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 445678888999998888999999999999998754432 2233321 223333333 235566666767777776
Q ss_pred ccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHc---CCHHHHHHHhCCCCHHHHHHHH
Q 008781 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSA 354 (554)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~---~~~~~L~~~l~~~~~~v~~~a~ 354 (554)
.+ +...+.++..+.+..+..+++.++-++...|..++..+..........++.. .++..+-.++.+++.-++..++
T Consensus 152 r~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 152 RH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp TS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred Hh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 54 6777888888888899999999999999999999988875555444444443 3567777889999999999999
Q ss_pred HHHHHHhcCCCcchh----hhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhH
Q 008781 355 FALGRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 410 (554)
Q Consensus 355 ~~L~~L~~~~~~~~~----l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (554)
..|+.+..+..|... +.+...+..++.+|.+++..+|..|..++.-+..++..-..
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~ 290 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQP 290 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChH
Confidence 999999988777543 33445688899999999999999999999988877654433
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.04 E-value=0.02 Score=63.13 Aligned_cols=317 Identities=12% Similarity=0.087 Sum_probs=169.9
Q ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHH
Q 008781 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (554)
Q Consensus 59 v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (554)
++..+..|...... .+..++..++.+|......-. ...++..+.++.+.++|.. . +++..|+.
T Consensus 191 ~~~~~~iL~~~~~~--~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~--~------------~~r~~A~e 253 (980)
T 3ibv_A 191 VSFVYEMMLAYSNA--KNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI--E------------ELRCAACE 253 (980)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS--H------------HHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC--h------------HHHHHHHH
Confidence 55555555554221 244577889999999887422 2344556788888888864 2 89999999
Q ss_pred HHHHhc---CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhc------Cc-----hhH--HH
Q 008781 139 ALGLLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE------NS-----SIK--TR 202 (554)
Q Consensus 139 ~L~~l~---~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~------~~-----~~~--~~ 202 (554)
+|..+. .+++.+..++.. + .+...+..-... ..+.++.+..+..+..++.. .+ +.+ ..
T Consensus 254 cL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~---~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~ 327 (980)
T 3ibv_A 254 TMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQ---STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCS 327 (980)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHH
T ss_pred HHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHH
Confidence 999988 334444433332 1 122222221100 01115555555444433321 11 000 01
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCC---cc---chH---HHHhcCCHHHHHHhhcCC------C-----
Q 008781 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN---DE---NKN---QIVECNALPTLILMLRSE------D----- 262 (554)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~---~~~---~~~~~~~~~~L~~ll~~~------~----- 262 (554)
-.-.+.++.++.++.+++.++...++..+..+.... +. ... .+. ..+++.++.-+.-+ +
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~e 406 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSE 406 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchh
Confidence 112367888999998888888777766666554310 00 111 111 12344455444411 1
Q ss_pred -----HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---cCChHHHHHHHHHHHHHhcCCcccHHHH-HHc-
Q 008781 263 -----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHI-VQR- 332 (554)
Q Consensus 263 -----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~~~- 332 (554)
.+.|......+..++.-.++..-...-.-+.+.+.+.+. +.++...+.++.+|+.++.+-......+ -..
T Consensus 407 d~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~ 486 (980)
T 3ibv_A 407 EEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDK 486 (980)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccc
Confidence 134555443333333222322111000112222333332 3457888999999999875432211110 001
Q ss_pred ---CCHHHHHHHhC-----CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhc------CCChhHHHHHHHHH
Q 008781 333 ---GAVRPLIEMLQ-----SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD------SKNGSLQHNAAFAL 398 (554)
Q Consensus 333 ---~~~~~L~~~l~-----~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~------~~~~~v~~~a~~~L 398 (554)
.+++.+..++. .+.+.++..++++++..+..-... ...+++++..+- +++..++..|+.++
T Consensus 487 ~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af 561 (980)
T 3ibv_A 487 SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLF 561 (980)
T ss_dssp CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHhccccccCCChhHHHHHHHHH
Confidence 13455555554 567899999999999988654332 245666666553 46678999999999
Q ss_pred HHcccC
Q 008781 399 YGLADN 404 (554)
Q Consensus 399 ~~l~~~ 404 (554)
.+++..
T Consensus 562 ~~f~~~ 567 (980)
T 3ibv_A 562 YRFVKS 567 (980)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999754
No 100
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.99 E-value=0.00043 Score=62.53 Aligned_cols=179 Identities=21% Similarity=0.159 Sum_probs=113.1
Q ss_pred ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccC
Q 008781 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (554)
Q Consensus 93 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~ 172 (554)
++..|......=....|..++++++. .||..++..| . .+.|..++.+.+.
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~------------~VR~~aA~~L---~--------------~~~L~~ll~D~d~- 112 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDE------------VVRRAVAYRL---P--------------REQLSALMFDEDR- 112 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSH------------HHHHHHHTTS---C--------------SGGGGGTTTCSCH-
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCH------------HHHHHHHHHC---C--------------HHHHHHHHcCCCH-
Confidence 35566655554334455555555544 7777777542 1 1345555655544
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHH
Q 008781 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (554)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 252 (554)
.++..++..+ . ...+..+++++++.++..++.. +. .+
T Consensus 113 -------~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~ 149 (244)
T 1lrv_A 113 -------EVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PG 149 (244)
T ss_dssp -------HHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GG
T ss_pred -------HHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC---------------HH
Confidence 7777776632 1 1245566778888888877762 11 12
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHc
Q 008781 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (554)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~ 332 (554)
.+..+++++++.||..++.. + ..+.+..++.+.++.|+..++..+
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~---l---------------~~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKR---L---------------PEESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH---S---------------CGGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHHHHcCCCHHHHHHHHHc---C---------------CHHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 34567778888898888775 1 112344677888888888888642
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHH
Q 008781 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (554)
Q Consensus 333 ~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (554)
..+.|..++.++++.||..++..+. .+.|..+ .++++.|+..+...|
T Consensus 195 -~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1245777788899999998888753 2445555 888899988876544
No 101
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.93 E-value=0.018 Score=53.42 Aligned_cols=206 Identities=13% Similarity=0.130 Sum_probs=149.8
Q ss_pred HHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCccc----HHHHHHcCCHHHHHHHhCC-CCHHHHHHHHHHHHH
Q 008781 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC----KVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR 359 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~----~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~ 359 (554)
+.+...+++..|+..|..-+.+.++.++.++.++....... ...+..+ ...+..++.. .++++.-.+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC--HHHHHHHHHhhccchhHhHHHHHHHH
Confidence 45566788999999999999999999999999998654432 2233321 2233333331 345566677788888
Q ss_pred HhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHccc-CCcchhHHHhhCccccccchhhhhhhhHHHHHHHH
Q 008781 360 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (554)
Q Consensus 360 L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~ 438 (554)
+.++......+...+.+..+.+.+..++=++...|..++..+.. +......++..+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n----------------------- 206 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH----------------------- 206 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-----------------------
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh-----------------------
Confidence 88887777777788888889999999999999999998888744 333333333322
Q ss_pred HHHHHHHhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhH----HHHHcCcHHHHHHhhCCCChhHHHHHHHHHH
Q 008781 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT----IFIDGGGLELLLGLLGSTNPKQQLDGAVALF 514 (554)
Q Consensus 439 ~~l~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 514 (554)
-..++..+-.++.+++.-+++.++..|+.+..+..+.. .+-+..-+..++.++.++...+|.+|-.+..
T Consensus 207 -------yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 207 -------YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp -------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence 12356777789999999999999999999977766443 3334566889999999999999999999888
Q ss_pred HHHhhcCc
Q 008781 515 KLANKATT 522 (554)
Q Consensus 515 ~L~~~~~~ 522 (554)
-.......
T Consensus 280 vFVANP~K 287 (341)
T 1upk_A 280 VFVANPNK 287 (341)
T ss_dssp HHHHCSSC
T ss_pred eeeeCCCC
Confidence 76665443
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.021 Score=53.07 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=124.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccc--hHHHH-h-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccCh---
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN--KNQIV-E-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--- 281 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~-~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--- 281 (554)
+| +-+-|.+.+...|..|+..|..+....+.. ..... . ....+.+-..+.+.+..+...++.++..++....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 567888999999999999998887533221 11111 1 2345666778889999999999999998875311
Q ss_pred --hhHHHHHHcCCHHHHHHH-hccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHH
Q 008781 282 --NIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (554)
Q Consensus 282 --~~~~~~~~~~~l~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~ 358 (554)
.......-..+++.|+.- +.+....++..+..++..++........ +++.+...+.+.++.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 111111223456666653 6777788888888888777633222111 2456667788899999999999999
Q ss_pred HHhcCCCcc---hhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC
Q 008781 359 RLAQDMHNQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 359 ~L~~~~~~~---~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (554)
.+....... ....-..+++.+..++.+.++.||..|..++..+-..
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 887532111 1111122455677788999999999999998877544
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.92 E-value=0.0063 Score=55.27 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=119.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHH----hhcCCCHHHHHHHHHHHHHHhcc----Ch
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL----MLRSEDSAIHYEAVGVIGNLVHS----SP 281 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~----ll~~~~~~v~~~a~~~L~~L~~~----~~ 281 (554)
+.+...+-+.|..-+..++..|......++ ..+.. .++.+++ .+.+.+..+...++.+|..+... ..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 455566667788878888888877664332 22222 2344444 33478999999999888887431 11
Q ss_pred hhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
....+- ..-++|.|+.-+.+....++..+-.++..++...+. ..+++.++.-+++.++.+|..++..+..+.
T Consensus 124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 111110 123788999999888888888777777666532111 235677888889999999999999999986
Q ss_pred cCCCcchhhhhcCCH---HHHHHHhcCCChhHHHHHHHHHHHccc
Q 008781 362 QDMHNQAGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLAD 403 (554)
Q Consensus 362 ~~~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (554)
...... ...++ +.+..++.+.+..||.+|..++..+-.
T Consensus 196 ~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 196 TNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 532222 23467 999999999999999999998886643
No 104
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.90 E-value=0.098 Score=46.40 Aligned_cols=171 Identities=15% Similarity=0.209 Sum_probs=120.4
Q ss_pred HHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHH
Q 008781 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-----SAIHYEAVGVIGNLVH-SSPNIKKEVLAAGALQPVIG 298 (554)
Q Consensus 225 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-----~~v~~~a~~~L~~L~~-~~~~~~~~~~~~~~l~~L~~ 298 (554)
..|+..|..+++ +++.+..+++.++.-.|..+|...+ +.+|..++++++.++. ++++....+.+.++++..+.
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 455556666676 7999999999988888888887443 5789999999999986 45566778888999999999
Q ss_pred HhccCChHHHHHHHHHHHHHhcCCcccHHHHH--------HcCCHHHHHH-HhCCCCHHHHHHHHHHHHHHhcCCCcchh
Q 008781 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIV--------QRGAVRPLIE-MLQSPDVQLREMSAFALGRLAQDMHNQAG 369 (554)
Q Consensus 299 lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~--------~~~~~~~L~~-~l~~~~~~v~~~a~~~L~~L~~~~~~~~~ 369 (554)
.++.++.-.+.-|..++..+..++.. ...+. -..++..++. +.+++++.+.+...++...|+.++..+..
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~G-L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTG-LAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHH-HHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchh-HHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999988888899988888644321 11111 1123333333 34468899999999999999988766654
Q ss_pred hhh-------cCCHHHHHHHhcCCChhHHHHHHHHHHHc
Q 008781 370 IAH-------NGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (554)
Q Consensus 370 l~~-------~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (554)
+.. +|....++ .+|+.++..-...+.|+
T Consensus 232 L~~~LP~~Lrd~tf~~~l----~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 232 LRQCLPDQLKDTTFAQVL----KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHSCGGGTSSTTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred HHHhCcHHhhChHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 332 23333222 24677777666666665
No 105
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.88 E-value=0.046 Score=60.45 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHH
Q 008781 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (554)
Q Consensus 178 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 252 (554)
+|..++.++++++.++..-.+....-.-..+++.|+.++.+ +...++..++++++..+.--..+... .. .++.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~-~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LR-TVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HH-HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HH-HHHH
Confidence 47999999999999997544332323334567778887753 22345566778888776421111122 21 2456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHH------cCCHHHH----HHHhccCChHHHHHHHHHHHHHhcCC
Q 008781 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPV----IGLLSSCCSESQREAALLLGQFAATD 322 (554)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~~l~~L----~~lL~~~~~~~~~~a~~~L~nl~~~~ 322 (554)
.|+..+.++++.++..|++++.+|+.. ++..+.. ...++.+ ......-.......+..+++.+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 666777777899999999999999853 3344432 1133333 33334445666677777888887654
Q ss_pred c
Q 008781 323 S 323 (554)
Q Consensus 323 ~ 323 (554)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.026 Score=52.42 Aligned_cols=186 Identities=11% Similarity=0.052 Sum_probs=121.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhcCCcccH--HHHH--HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcc----
Q 008781 296 VIGLLSSCCSESQREAALLLGQFAATDSDCK--VHIV--QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ---- 367 (554)
Q Consensus 296 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~--~~~~--~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~---- 367 (554)
+-.-|.+.+|..|.+|+..|..+....+... .... -....+.+...+.+.+..++..++.++..++......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5577889999999999998888764332111 1111 1235567778888999999999999999988643211
Q ss_pred hh--hhhcCCHHHHHH-HhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHH
Q 008781 368 AG--IAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (554)
Q Consensus 368 ~~--l~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~ 444 (554)
.. ..-...++.|+. .+.+....++..+..++..++........
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~---------------------------------- 139 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ---------------------------------- 139 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH----------------------------------
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH----------------------------------
Confidence 11 122344666664 46777888888888887776543322111
Q ss_pred HhhchHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--ch--hhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 445 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+++.++..+.+.+|.++..++..|..+... .. .....+ ...++.+..++.+.++.||..|..++..+-+.-
T Consensus 140 ----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 140 ----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp ----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred ----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 245556677888999999999888887422 11 111111 124566778899999999999999998887653
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.83 E-value=0.0083 Score=59.29 Aligned_cols=241 Identities=14% Similarity=0.074 Sum_probs=152.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHH--HHcCCHHHHHHHhc-c------C---ChHHHHHHHHHHHH
Q 008781 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV--LAAGALQPVIGLLS-S------C---CSESQREAALLLGQ 317 (554)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~lL~-~------~---~~~~~~~a~~~L~n 317 (554)
+.+.|+.-|-++..++|.-|+-+|+.+........... .+.++.-.++.++. + + -.+||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 46677777778999999999999999865322100000 01122333333331 1 1 24789999999999
Q ss_pred HhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHH
Q 008781 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 397 (554)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 397 (554)
+ ..-++. ..++..++..+..+.+++|+.++-.|..+. +--.. -.++++.++..|.+.+.+|+..|+.+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 544433 344555555557789999999999999881 11111 24557778888899999999999999
Q ss_pred HHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHH-----HhhchHHHHHHHHhhCCHHHHHHHHHHH
Q 008781 398 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALAL 472 (554)
Q Consensus 398 L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~l~~L~~ll~~~~~~v~~~a~~~L 472 (554)
|.-++ .++....++.. ....|.+. .+...+...+.+.+.++-.. .....+|+|.++++++-+.||..+++++
T Consensus 323 LiPIA-~p~~l~~LL~i-LWd~L~~L-DDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL 399 (800)
T 3oc3_A 323 LCHFP-ITDSLDLVLEK-CWKNIESE-ELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMV 399 (800)
T ss_dssp HTTSC-CSSTHHHHHHH-HHHHHHTC-CSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred hhhhc-chhhHHHHHHH-HHHHhhhh-cccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 99999 44444443332 11122211 22334444444444443321 2346889999999999999999999999
Q ss_pred HhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHH
Q 008781 473 AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 514 (554)
Q Consensus 473 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 514 (554)
..+....--+ -.+..++-..+++++..+..+-.
T Consensus 400 ~tfL~~~~LR---------LIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 400 KNLSEESIDF---------LVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TTCCCHHHHH---------HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHhhhHHH---------HHHHHHHhCCcHHHHHHHHHHHH
Confidence 9988111111 13345566788888887766653
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.72 E-value=0.0018 Score=58.44 Aligned_cols=173 Identities=18% Similarity=0.102 Sum_probs=113.0
Q ss_pred hhHHHHHHHHH-----HHHHhccC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCCh
Q 008781 75 ADRAAAKRATH-----VLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP 147 (554)
Q Consensus 75 ~~~~~~~~a~~-----~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 147 (554)
++..++..++. .|..+..+ +..|......-..+.|..++++++. .||..++..+ .
T Consensus 62 ~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~------------~VR~~aA~~l---~--- 123 (244)
T 1lrv_A 62 PFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDR------------EVRITVADRL---P--- 123 (244)
T ss_dssp SSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCH------------HHHHHHHHHS---C---
T ss_pred CCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCH------------HHHHHHHHhC---C---
Confidence 35556666663 34445553 4444444444344666677766655 8998888743 1
Q ss_pred hhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHH
Q 008781 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAA 227 (554)
Q Consensus 148 ~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 227 (554)
.+.+..++++++. .++..++.. +. .+.+..+++++++.|+..+
T Consensus 124 -----------~~~L~~L~~D~d~--------~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~a 166 (244)
T 1lrv_A 124 -----------LEQLEQMAADRDY--------LVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLV 166 (244)
T ss_dssp -----------TGGGGGGTTCSSH--------HHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHH
T ss_pred -----------HHHHHHHHcCCCH--------HHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHH
Confidence 1234444555544 888887762 11 2345567788999999988
Q ss_pred HHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHH
Q 008781 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307 (554)
Q Consensus 228 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 307 (554)
+.. +. .+.+..++.+++..||..++..+ ..+.|..++.+.++.+
T Consensus 167 a~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~V 210 (244)
T 1lrv_A 167 AKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTV 210 (244)
T ss_dssp HHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHH
T ss_pred HHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHH
Confidence 775 11 13455788899999999998753 1245778899999999
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHH
Q 008781 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (554)
Q Consensus 308 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L 357 (554)
+..++..+. .+.+..+ +++++.||..+...|
T Consensus 211 R~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 211 RLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 999888753 2455555 889999999887654
No 109
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.56 E-value=0.047 Score=49.56 Aligned_cols=178 Identities=9% Similarity=-0.027 Sum_probs=117.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh----CCCCHHHHHHHHHHHHHHhcC---CCcc
Q 008781 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML----QSPDVQLREMSAFALGRLAQD---MHNQ 367 (554)
Q Consensus 295 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l----~~~~~~v~~~a~~~L~~L~~~---~~~~ 367 (554)
.+...|-+.+..-+..++..|.......+ ..+.. .+..++.|+ .+.++.+...++.+|..+... .+.+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555555667777777777766543322 22211 233344443 377888888888888887421 1111
Q ss_pred hhhh-hcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHh
Q 008781 368 AGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (554)
Q Consensus 368 ~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (554)
-.-. ..-++|.|+.-+.+....+|..+-.++..+..-.+ .
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~---------------------------------------~ 165 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG---------------------------------------P 165 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC---------------------------------------H
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC---------------------------------------H
Confidence 1111 13467888888888888899888887766643110 1
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcH---HHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL---ELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
..+++.++.-+++.+...+..++..+..+....... ...++ +.+..+++++|..||..|..++..+-.+.
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 124677777788899999999999999884332211 23468 99999999999999999999998777654
No 110
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.52 E-value=0.23 Score=46.21 Aligned_cols=177 Identities=12% Similarity=0.088 Sum_probs=103.3
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH-HHhccccCccccchhHHHHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRR 184 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~ 184 (554)
+..+.++++.+. +.+--++.++.-+.-++.....+...+.-..++. ++....+.. . ...+..
T Consensus 105 l~~l~kil~WP~-------------~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~-~---p~n~ml 167 (304)
T 3ebb_A 105 LQILWKAINCPE-------------DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKG-K---PANQLL 167 (304)
T ss_dssp HHHHHHHHTSCT-------------TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTS-C---HHHHHH
T ss_pred HHHHHHHHcCCH-------------HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCC-C---hHHHHH
Confidence 566777764433 3445677777776767766666655443344442 222211111 1 155889
Q ss_pred HHHHHHHHhhcCchhHHHHHhc--CChHHHHHhhcCCCHHHHHHHHHHHHHhccCCcc--chHHHHhcCCHHHHHHhhc-
Q 008781 185 AADAITNLAHENSSIKTRVRME--GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLR- 259 (554)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~~L~~ll~- 259 (554)
+++++.|+.. ++..+..+... .++..+...+.+++..++..++..+.|++..... ..+.. ..++..+..++.
T Consensus 168 ~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~ 244 (304)
T 3ebb_A 168 ALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEV 244 (304)
T ss_dssp HHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhc
Confidence 9999999988 55555554431 2334444444567889999999999999853111 11111 113344444454
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~ 302 (554)
..+.+....++-+|++|...+.+.++....-|.-..+-.+...
T Consensus 245 ~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 245 VQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred cCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 4588999999999999998765544433334444444445544
No 111
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.49 E-value=0.006 Score=60.25 Aligned_cols=235 Identities=16% Similarity=0.072 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHHc--C-ChHHHHHHH-hccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHH
Q 008781 131 EVEKGSAFALGLLA--VKPEHQQLIVDN--G-ALSHLVNLL-KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (554)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~i~~~--g-~l~~L~~lL-~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (554)
++|..|+.+|..+. .....-.. ... . ++..++=+. .+..+-......-.+|+.|+.+|+.+ ..-+..
T Consensus 189 EiRHGAALGLREILR~hG~GAGR~-~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e----- 261 (800)
T 3oc3_A 189 YKRHGAFLAFAAMFSEIDNGGDIQ-IRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP----- 261 (800)
T ss_dssp HHHHHHHHHHHHHHHHCC----CC-CCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----
T ss_pred hhhhHHHHHHHHHHHHhccCCcee-ccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----
Confidence 99999999998877 22100000 001 1 122222222 22222222223338999999999999 544432
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhH
Q 008781 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (554)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (554)
..++..++..+..+..+++..++-.|.++.. -... -.++++.++..|.+.+++|+..|+.+|.-++ . +...
T Consensus 262 -~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l 332 (800)
T 3oc3_A 262 -NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSL 332 (800)
T ss_dssp -CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTH
T ss_pred -HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhH
Confidence 3445555555677889999999999999821 1111 1356788888999999999999999999997 2 2221
Q ss_pred HHHHHcCCHHHHHHHhccCC--hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008781 285 KEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~ 362 (554)
. .++..+...|.+-+ ..........|+.|++..... ..+...+|.|..++..+-+.||..++.+|..+.
T Consensus 333 ~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL- 403 (800)
T 3oc3_A 333 D-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS- 403 (800)
T ss_dssp H-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-
T ss_pred H-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-
Confidence 2 23445555555432 233445556777776544321 112378899999999999999999999998876
Q ss_pred CCCcchhhhhcCCHHH-HHHHhcCCChhHHHHHHHHHH
Q 008781 363 DMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALY 399 (554)
Q Consensus 363 ~~~~~~~l~~~~~l~~-L~~ll~~~~~~v~~~a~~~L~ 399 (554)
...++.. ..+++-.++.+++..+..+..
T Consensus 404 ---------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 ---------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ---------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1112233 234556678888877777664
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.93 E-value=0.18 Score=44.30 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhh-cCchhHHHHHhcCCh
Q 008781 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGI 209 (554)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~~~i 209 (554)
++|..|+.+|+.+. + . ...++.+...+.... .|.+++.+..++..+|. .+++ ..+
T Consensus 86 eVR~~Av~lLg~~~--~-~------~~~L~~ir~~va~D~-------~WrVre~lA~a~~~~~~~~~pe--------~~l 141 (240)
T 3l9t_A 86 QVRMYAVFLFGYLS--K-D------KEILIFMRDEVSKDN-------NWRVQEVLAKAFDEFCKKIEYK--------KAL 141 (240)
T ss_dssp HHHHHHHHHHHHTT--T-S------HHHHHHHHHTGGGCS-------CHHHHHHHHHHHHHHHHHHCTT--------TTH
T ss_pred HHHHHHHHHHHhcc--C-c------HHHHHHHHHHhCCCC-------CccHHHHHHHHHHHHHHhcCHH--------HHH
Confidence 99999999998872 1 1 012333333232222 36999999999999995 4443 256
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHH
Q 008781 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (554)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 289 (554)
+.+...+.+++..+|+.|+..+...+.. +..+... .-+++.+-.+..+++.-||....+.|..++..+|+....+++
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp--~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENP--NEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCH--HHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 7888999999999999999887654432 2111111 113566666777889999999999999999998886555543
No 113
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.93 E-value=2.4 Score=47.89 Aligned_cols=259 Identities=13% Similarity=0.087 Sum_probs=139.1
Q ss_pred hhHHHHHHHHHHHHHhcc------ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CC
Q 008781 75 ADRAAAKRATHVLAELAK------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VK 146 (554)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~ 146 (554)
.+..++..|+..|.+... +++.+.. ++..++..+...-..... .++.++...+.++..++ +-
T Consensus 59 ~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~-Ir~~ll~~l~~~~~~~~~---------~~~~vr~kla~~la~Ia~~d~ 128 (1204)
T 3a6p_A 59 QVAIVRHFGLQILEHVVKFRWNGMSRLEKVY-LKNSVMELIANGTLNILE---------EENHIKDALSRIVVEMIKREW 128 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH-HHHHHHHHHHHSSCCTTS---------SCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHhhcccccc---------ccHHHHHHHHHHHHHHHHHhC
Confidence 356788899999998753 2333333 333344443332111000 02378889999999988 22
Q ss_pred hhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcC------chhHH-----HHHhc--CChHHHH
Q 008781 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN------SSIKT-----RVRME--GGIPPLV 213 (554)
Q Consensus 147 ~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~------~~~~~-----~~~~~--~~i~~L~ 213 (554)
|+. -.+.++.|+.++... . ...+.++.+|..++.+. ...+. .+... .+++.+.
T Consensus 129 p~~-----Wp~ll~~L~~~~~~~-~--------~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~ 194 (1204)
T 3a6p_A 129 PQH-----WPDMLIELDTLSKQG-E--------TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLL 194 (1204)
T ss_dssp TTT-----CTTHHHHHHHHHHTC-H--------HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccc-----chHHHHHHHHHhcCC-H--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 235677888887652 2 55777888888887531 11111 11211 1222233
Q ss_pred HhhcC-------------------CCHHHHHHHHHHHHHhccCCccchHHHHhcC--CHHHHHHhhcCCCHHHHHHHHHH
Q 008781 214 ELLEF-------------------TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGV 272 (554)
Q Consensus 214 ~ll~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~~~ 272 (554)
..+.. .+..+...++.++.+...- .....+.+.. .++.+..++. +++++..|+.|
T Consensus 195 ~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W--i~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ec 270 (1204)
T 3a6p_A 195 NTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW--VSMSHITAENCKLLEILCLLLN--EQELQLGAAEC 270 (1204)
T ss_dssp HHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT--SCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc--cCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHH
Confidence 33322 1234666777777766531 1222333332 6777776665 56789999999
Q ss_pred HHHHhccC--hhhHHHHHHc---CCHHHHHHHhc--------cCChHHHHHHHHHHHHHhcCCcccHHHHH---------
Q 008781 273 IGNLVHSS--PNIKKEVLAA---GALQPVIGLLS--------SCCSESQREAALLLGQFAATDSDCKVHIV--------- 330 (554)
Q Consensus 273 L~~L~~~~--~~~~~~~~~~---~~l~~L~~lL~--------~~~~~~~~~a~~~L~nl~~~~~~~~~~~~--------- 330 (554)
|..+.... +..+..++.. ..+..++..+. +.+.+..+..+..+..+.. .....+.
T Consensus 271 L~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~ 347 (1204)
T 3a6p_A 271 LLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPS 347 (1204)
T ss_dssp HHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCT
T ss_pred HHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChh
Confidence 99998643 2222222211 11334444432 1124556666666666641 1111111
Q ss_pred -HcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC
Q 008781 331 -QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (554)
Q Consensus 331 -~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~ 364 (554)
-.++++.++.+..+++..+...++..-..+.++.
T Consensus 348 ~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~ 382 (1204)
T 3a6p_A 348 NFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE 382 (1204)
T ss_dssp THHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence 0245777887888888777777777666676653
No 114
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.92 E-value=0.11 Score=48.43 Aligned_cols=180 Identities=11% Similarity=-0.037 Sum_probs=103.7
Q ss_pred HHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHH-HhhcCCCCCccccCCCcchHHHHHHHHHHHHH
Q 008781 64 NVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (554)
Q Consensus 64 ~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (554)
..+.+.++|+.+ .+.-++..|+-+..++.....+.+.+.-..++ .++..-+.. ..+..+..+++++.|
T Consensus 106 ~~l~kil~WP~~---~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~p~n~ml~lR~l~N 174 (304)
T 3ebb_A 106 QILWKAINCPED---IVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPK--------GKPANQLLALRTFCN 174 (304)
T ss_dssp HHHHHHHTSCTT---TCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTT--------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHH---hHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCC--------CChHHHHHHHHHHHH
Confidence 444444455542 45677888888888887777776544333343 222221110 013568899999999
Q ss_pred hcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCH
Q 008781 143 LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDT 221 (554)
Q Consensus 143 l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~ 221 (554)
+..++..+..+... ...++..+....... ...++..++.++.|++...-..+..-.....+..+..++. ..+.
T Consensus 175 lF~~~~g~~~l~~~--~~~il~~~~~~~~~~----nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~ 248 (304)
T 3ebb_A 175 CFVGQAGQKLMMSQ--RESLMSHAIELKSGS----NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDL 248 (304)
T ss_dssp GGGSHHHHHHHHHT--HHHHHHHHHGGGSSC----CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred ccCCchhHHHHHHH--HHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCH
Confidence 99888888887753 355555554332111 1188889999999998632111100001113334444453 3588
Q ss_pred HHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcC
Q 008781 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (554)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (554)
+....++.+|+++...+.+.++.....|+-..+-+....
T Consensus 249 EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 249 EATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 899999999999998544333333334444444444443
No 115
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.66 E-value=3.5 Score=45.61 Aligned_cols=104 Identities=12% Similarity=0.041 Sum_probs=66.9
Q ss_pred CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhhC-----
Q 008781 386 KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA----- 460 (554)
Q Consensus 386 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~~----- 460 (554)
.++...++++|+++.++.....- .+.. +-..+++.|+.+....
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~---~E~~-----------------------------~Lp~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEE---DEKR-----------------------------FLVTVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHH---HHHH-----------------------------HHHHHHHHHHHHHHHSCSHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcc---cccc-----------------------------hHHHHHHHHhcccccccccch
Confidence 35889999999999998543210 0000 1112467777777554
Q ss_pred CHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhcCc
Q 008781 461 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (554)
Q Consensus 461 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (554)
.+.++...+++++..+..-.....+.+. .+..|.+.+.++++.++..|+.++..++.+...
T Consensus 539 k~~vas~i~~vlgrY~~wl~~h~~~L~~-vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFLRAHWKFLKT-VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHH-HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred hHHHHHHHHHHHhhhHHHHHhCHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 2345555667888775553222222222 466777888889999999999999999987654
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.46 E-value=0.17 Score=44.45 Aligned_cols=143 Identities=15% Similarity=0.073 Sum_probs=98.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhccCChHHHHHHHHHHHHHhc-CCcccHHH
Q 008781 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKVH 328 (554)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~ 328 (554)
++....+..++..++|..|+..|+.+ .... ..++.+.. +..+.++.|++.++.++..++. .+++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 44555666778889999999988887 3111 24566666 4557789999999999999984 33332
Q ss_pred HHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc-c
Q 008781 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-N 407 (554)
Q Consensus 329 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 407 (554)
.++.+..+..+++..+|..|...+.-.+...... ..-.-+++.|-.+..+++.-||....+.|..++...+ -
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 6788899999999999999988876544321110 0011134445556677788899999999999987644 3
Q ss_pred hhHHHh
Q 008781 408 VADFIR 413 (554)
Q Consensus 408 ~~~~~~ 413 (554)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 117
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.29 E-value=0.4 Score=44.35 Aligned_cols=135 Identities=17% Similarity=0.260 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc-
Q 008781 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR- 259 (554)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~- 259 (554)
+...+...|.-+. ++...-.-++..+|+..+...++-++.++.++.+..|...+....-.. .--.+.+|.++..+.
T Consensus 259 VvtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 259 VIIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhcc
Confidence 3444445444444 466667778899999999999999999999999999999885321111 111345788887776
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccC-------ChHHHHHHHHHHHHH
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQF 318 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~~~~a~~~L~nl 318 (554)
++++++.....+.|+|...+....++..+..|++..|-..+... +..-+..+|..++|-
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 78999999999999999998888888888899999988876432 223345555555553
No 118
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.21 E-value=2.8 Score=46.34 Aligned_cols=326 Identities=9% Similarity=0.096 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHH-HHhhcCCCCCccccCCCcchHHHH
Q 008781 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL-VKHLQAPPTSEADRNLKPFEHEVE 133 (554)
Q Consensus 55 ~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L-v~lL~~~~~~~~~~~~~~~~~~v~ 133 (554)
+...++.+++.+...+.... +..+...++.+|..+.+.-.. ..+++.+.++.| ..+|.. ++++
T Consensus 200 L~~~~~~Il~ll~~iL~~~~-~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L~~~~L~~--------------~~~r 263 (1073)
T 3gjx_A 200 MCNEFSQIFQLCQFVMENSQ-NAPLVHATLETLLRFLNWIPL-GYIFETKLISTLIYKFLNV--------------PMFR 263 (1073)
T ss_dssp HHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHHHTSSS--------------HHHH
T ss_pred HHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHHHHHhcCC--------------hHHH
Confidence 33445666666655554332 445667788888888874222 346678888877 466632 2899
Q ss_pred HHHHHHHHHhc--CChhhHHHHHH--cCChHHHHHHHhccccC-----ccccchhHHHHHHHHHHHHHhhcCchhHHHHH
Q 008781 134 KGSAFALGLLA--VKPEHQQLIVD--NGALSHLVNLLKRHMDS-----NCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (554)
Q Consensus 134 ~~a~~~L~~l~--~~~~~~~~i~~--~g~l~~L~~lL~~~~~~-----~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (554)
..|+.+|..+. +.+++.+.+.. .+.+..+..++.....- .....+.+.....+.++..+...+- ..+.
T Consensus 264 ~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~---~lIe 340 (1073)
T 3gjx_A 264 NVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG---QLLE 340 (1073)
T ss_dssp HHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 99999999988 33333333321 12222222222111000 0011112666667777776654221 1122
Q ss_pred hc-C-------ChHHHHHhhcCCCHHHHHHHHHHHHHhcc----CCc-----c------------chHHHHh---cCCHH
Q 008781 205 ME-G-------GIPPLVELLEFTDTKVQRAAAGALRTLAF----KND-----E------------NKNQIVE---CNALP 252 (554)
Q Consensus 205 ~~-~-------~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~-----~------------~~~~~~~---~~~~~ 252 (554)
.. + ++..++.+...++.++...+...=..+.. ..+ . .+..+.. ..+..
T Consensus 341 ~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~ 420 (1073)
T 3gjx_A 341 KRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRL 420 (1073)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 11 1 23334555556777776665544222221 110 0 1111111 11223
Q ss_pred HHHHhhcCCC--------------------H--HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc--CChHHH
Q 008781 253 TLILMLRSED--------------------S--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQ 308 (554)
Q Consensus 253 ~L~~ll~~~~--------------------~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~ 308 (554)
.++.-+..++ . ......-.+|..++.-.......+ .++.+...+.. .++...
T Consensus 421 vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~l 496 (1073)
T 3gjx_A 421 LMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNL 496 (1073)
T ss_dssp HHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHH
T ss_pred HHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHH
Confidence 3333333111 0 111112223333332122211111 23344444443 358899
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCCC-----CHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHh
Q 008781 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-----DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 383 (554)
Q Consensus 309 ~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~~-----~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll 383 (554)
+.++|+++.++..-......-.-..+++.|+.+...+ .+.++...+++++..++.-.....+. ...+..|++.+
T Consensus 497 ea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~~vl~~L~~~m 575 (1073)
T 3gjx_A 497 NTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-KTVVNKLFEFM 575 (1073)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHT
T ss_pred hHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-HHHHHHHHHHH
Confidence 9999999999743222111111123456666555432 23355556678887765322222222 12455566677
Q ss_pred cCCChhHHHHHHHHHHHcccC
Q 008781 384 DSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 384 ~~~~~~v~~~a~~~L~~l~~~ 404 (554)
++.++.++.+|+.++..++..
T Consensus 576 ~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 576 HETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp TCCSTTHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999754
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.23 E-value=3 Score=46.32 Aligned_cols=174 Identities=15% Similarity=0.127 Sum_probs=106.4
Q ss_pred hHHHHHHHhccccCccccchhHHHHHHHHHHHHH----hhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL----AHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L----~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
+..+..+++....... ..++..++-+++.+ |..++...... ...+...+.+.+...+..-+..++.+|+|+
T Consensus 393 l~~~~~l~~~~~~~~~----~~l~~ta~La~gslV~k~c~~~~~c~~~~-v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNR----PILRKTAVLGYGSLVFRYCANTVSCPDEL-LQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTC----HHHHHHHHHHHHHHHHHHHTTCSSCCGGG-THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccC----HHHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 5556667765431110 14555555555554 43322111100 011223344455667788888999999999
Q ss_pred ccCCccchHHHHhcCCHHHHHHhhc-------CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc--cCCh
Q 008781 235 AFKNDENKNQIVECNALPTLILMLR-------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCS 305 (554)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~-------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~ 305 (554)
.. + ..++.|.+++. +....++..|+++|..++...+.. +-+.+.++.. ..++
T Consensus 468 g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 468 GQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKS 528 (1056)
T ss_dssp TC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCH
T ss_pred CC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCCh
Confidence 85 2 24667777663 224578899999999997655443 2335677774 4567
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhcCCCc
Q 008781 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHN 366 (554)
Q Consensus 306 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~L~~~~~~ 366 (554)
++|..|+..|.... +... .+..+...+. +++..+.......|.+++.....
T Consensus 529 EvRiaA~~~Lm~t~---P~~~-------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 529 ELRIRSCIVFFESK---PSVA-------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHHHHTC---CCHH-------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHC---cCHH-------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 88888888875532 3221 3566666666 47889999999999999876543
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.92 E-value=1.2 Score=39.61 Aligned_cols=175 Identities=11% Similarity=0.110 Sum_probs=102.4
Q ss_pred HHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHH-cCChH
Q 008781 84 THVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD-NGALS 160 (554)
Q Consensus 84 ~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~-~g~l~ 160 (554)
+..|....+ ...|.+.+ ..||+..|+.+|........ ......+.+.+..+++||..+.++....+.+.. .+++.
T Consensus 22 L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~-~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~ 99 (233)
T 2f31_A 22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKE-ETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 99 (233)
T ss_dssp HHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHH
T ss_pred HHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhccc-ccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHH
Confidence 444443333 46788888 46888889988864321100 000023567888999999999966665555554 46788
Q ss_pred HHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCch-h-HHHH----------HhcCChHHHHHhhcC-CCHHHHHHH
Q 008781 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-I-KTRV----------RMEGGIPPLVELLEF-TDTKVQRAA 227 (554)
Q Consensus 161 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~-~-~~~~----------~~~~~i~~L~~ll~~-~~~~v~~~a 227 (554)
.|...|..... .++..++..|..+|....+ . ...+ .+..-...+++.+++ .+.+.+..+
T Consensus 100 ~l~~~L~s~~~--------~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~ 171 (233)
T 2f31_A 100 LLVRAMDPAVP--------NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC 171 (233)
T ss_dssp HHHTTCCTTSH--------HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHH
T ss_pred HHHHHhCCCCc--------hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHH
Confidence 88877765554 8888999999999975431 1 1111 122345567777764 455666666
Q ss_pred HHHHHHhccCCccc------hHHHHhcCCHHHHHHhhcCCCHHHHHH
Q 008781 228 AGALRTLAFKNDEN------KNQIVECNALPTLILMLRSEDSAIHYE 268 (554)
Q Consensus 228 ~~~L~~l~~~~~~~------~~~~~~~~~~~~L~~ll~~~~~~v~~~ 268 (554)
+..+-.+....++. +..+...|+.+.+-.+=..+++++...
T Consensus 172 m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 172 LQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 66565555532221 334555665555544433455554433
No 121
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.86 E-value=2.4 Score=40.82 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=105.6
Q ss_pred HHHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHc-CCh
Q 008781 83 ATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN-GAL 159 (554)
Q Consensus 83 a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~-g~l 159 (554)
.+..|..-.+ ...|.+.|+ .+|+..|+.+|..-...... .....+...+..+++||..+..+......+..+ .++
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~-~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEE-TSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 4555555444 468888887 67899999998632110000 001123478888999999999666655555544 678
Q ss_pred HHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCc-hh-HHH----------HHhcCChHHHHHhhcC-CCHHHHHH
Q 008781 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SI-KTR----------VRMEGGIPPLVELLEF-TDTKVQRA 226 (554)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~-~~~----------~~~~~~i~~L~~ll~~-~~~~v~~~ 226 (554)
..|...+..... .++..++.+|..+|.... .. ... ..+..-...++..+++ .+.+.+..
T Consensus 165 ~~l~~~L~s~~~--------~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~ 236 (383)
T 3eg5_B 165 LLLVRAMDPAVP--------NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVG 236 (383)
T ss_dssp HHHHHTCCTTSH--------HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHH
T ss_pred HHHHHHhCCCch--------HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHH
Confidence 888888876655 888999999999997553 21 111 1223446677888876 46667766
Q ss_pred HHHHHHHhccCCccc------hHHHHhcCCHHHHHHhhc-CCCHHHH
Q 008781 227 AAGALRTLAFKNDEN------KNQIVECNALPTLILMLR-SEDSAIH 266 (554)
Q Consensus 227 a~~~L~~l~~~~~~~------~~~~~~~~~~~~L~~ll~-~~~~~v~ 266 (554)
++..+-.+....++. +..+...|+.+.+-. ++ .+++.+.
T Consensus 237 ~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L~ 282 (383)
T 3eg5_B 237 CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDMK 282 (383)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhHH
Confidence 666666666533222 333556666555554 54 3455443
No 122
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.67 E-value=3.6 Score=36.52 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=101.6
Q ss_pred CChhhHHHHHHcCChHHHHHHHhccccCccc---cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCH
Q 008781 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (554)
Q Consensus 145 ~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 221 (554)
......+.+ ..+|+..|+.+|......... +.+.+....++.||..++.........+...+.+..+...+.++++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 444556666 567888899888765322111 1233778889999999987555666666667788999999999999
Q ss_pred HHHHHHHHHHHHhccCCc-cc-hHHHH----------hcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChhh-----
Q 008781 222 KVQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNI----- 283 (554)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~----- 283 (554)
.++..++..|..+|..+. .+ ...+. +..-+..++..+. +.+.+.+..++..+-.+..+.++.
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~ 190 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH 190 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 999999999988886433 23 33322 2234556777776 345566666666665565544332
Q ss_pred -HHHHHHcCCHHHHHHHhccCChHHH
Q 008781 284 -KKEVLAAGALQPVIGLLSSCCSESQ 308 (554)
Q Consensus 284 -~~~~~~~~~l~~L~~lL~~~~~~~~ 308 (554)
+..+...|+.+.+-.+-...++++.
T Consensus 191 lR~ef~~~Gl~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 191 IRSELMRLGLHQVLQELREIENEDMK 216 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHCChHHHHHHHhccCCHHHH
Confidence 3344444555444444333444443
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.57 E-value=6 Score=38.74 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHhccC-hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 008781 76 DRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (554)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 154 (554)
+...+.-|+..+...-.+ |+.... ++..++.++...+. .||.+|.+.|..+|.+ ++...+
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~------------~IR~qaik~Lp~~ck~-~~i~ki- 101 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDV------------SIRRQAIKELPQFATG-ENLPRV- 101 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSH------------HHHHHHHHHGGGGCCT-TCHHHH-
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH------------HHHHHHHHhhHHHhhh-hhhhhH-
Confidence 345777888888887774 776655 47889999988877 9999999999999955 554444
Q ss_pred HcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008781 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (554)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (554)
...|+++|...+. .-...+-.+|..+...++. +.+..+...+..+++.+|..++..|..-
T Consensus 102 ----aDvL~QlLqtdd~--------~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 102 ----ADILTQLLQTDDS--------AEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp ----HHHHHHHTTCCCH--------HHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhccch--------HHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 3668888886654 4444555555555553443 2344555556567888999888887655
Q ss_pred ccC-CccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008781 235 AFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (554)
Q Consensus 235 ~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L 276 (554)
... ..+....-.+.-++..+.++|.+-..+=-...+.+|..+
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc
Confidence 432 111111111222345556666554443334444555444
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.51 E-value=1.3 Score=42.86 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=100.4
Q ss_pred cccHHHHHHcCCHHHHHHHhC-----------CCCHHHHHHHHHHHHHHhcCCCcchhhh-hcCCHHHHHHHhcCCChhH
Q 008781 323 SDCKVHIVQRGAVRPLIEMLQ-----------SPDVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLKLLDSKNGSL 390 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~~l~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v 390 (554)
.+....+. .+++..|+.+|. ..+......++.+|..+..+..+...+. ....+..|...+.+.++.+
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 34444444 445566666653 2245778899999999986655554444 4567888999999999999
Q ss_pred HHHHHHHHHHcccCCc--c-hhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHhh-CCHHHHH
Q 008781 391 QHNAAFALYGLADNED--N-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQR 466 (554)
Q Consensus 391 ~~~a~~~L~~l~~~~~--~-~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~~-~~~~v~~ 466 (554)
+..++..|..+|..++ + ...+++ ++..........-+..++..++. .+.+.+.
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~-----------------------Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~ 235 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLE-----------------------AMTERAEMDEVERFQPLLDGLKSGTSIALKV 235 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHH-----------------------HHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHH-----------------------HHHHHHHhCCCCcHHHHHHHHHccCcHHHHH
Confidence 9999999998887654 2 333332 22222222233445667777765 6778888
Q ss_pred HHHHHHHhhcCCch-------hhHHHHHcCcHHHHHHhhCCCChhHH
Q 008781 467 RVALALAHLCSPDD-------QRTIFIDGGGLELLLGLLGSTNPKQQ 506 (554)
Q Consensus 467 ~a~~~L~~l~~~~~-------~~~~~~~~~~l~~L~~ll~~~~~~v~ 506 (554)
.+...+..+...++ -+..+...|..+.+..+-...++++.
T Consensus 236 ~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 236 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence 77777777755533 34455566666666664444555543
No 125
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.50 E-value=1.8 Score=42.34 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhc
Q 008781 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (554)
...+.|+..|.......|..+.. .+..++.++.+.|..+|..|++.|..+|.+ ++.. .+.+.|.++|.
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~QlLq 110 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHHHh
Confidence 88999999999999989987765 567999999999999999999999999974 4422 34678999999
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhccCChHHHHHHHHHHHH
Q 008781 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (554)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a~~~L~n 317 (554)
.+++.-....-.+|..+...++.. .+..+..-+.+++..+++.+...|..
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHH
Confidence 888877776777777765544432 33444444444566677776665543
No 126
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.58 E-value=1.3 Score=41.09 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=99.7
Q ss_pred HHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHHcCChHH
Q 008781 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSH 161 (554)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~ 161 (554)
++...|.-+..+.+..+-+++.+++..+...++.++. ++.....+.|...++....... --...+|.
T Consensus 262 R~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~------------~l~RaG~KLLLQVSDaksL~~t-~L~e~LPF 328 (619)
T 3c2g_A 262 RTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN------------DLIRAGCKLLLQVSDAKALAKT-PLENILPF 328 (619)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHHHHHHHHTTCGGGGTS-CCTTHHHH
T ss_pred HHHHHHHHHhcccccccceeecccceeEEEEeecCCc------------HHHHhhhheeeeecchHHHhhc-cccccchH
Confidence 3344444455578888899999999999999999888 8888999999988855433211 11245788
Q ss_pred HHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHh
Q 008781 162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTL 234 (554)
Q Consensus 162 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l 234 (554)
++..+..+..+ ++.......|.|...+..+.++.....+.++.|-..+.. .+..-+..+|++++|.
T Consensus 329 i~~~i~~h~eD-------dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 329 LLRLIEIHPDD-------EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHCCCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCc-------ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 88888855443 999999999999999888999988889999988887643 2334555666666654
Q ss_pred c
Q 008781 235 A 235 (554)
Q Consensus 235 ~ 235 (554)
.
T Consensus 402 L 402 (619)
T 3c2g_A 402 L 402 (619)
T ss_dssp H
T ss_pred H
Confidence 4
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.32 E-value=5.2 Score=38.55 Aligned_cols=164 Identities=19% Similarity=0.225 Sum_probs=102.8
Q ss_pred ChhhHHHHHHcCChHHHHHHHhccccCccc---cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH
Q 008781 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222 (554)
Q Consensus 146 ~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 222 (554)
.....+.+. .+|+..|+.+|......... +.+......++.||..++.........+...+++..+...+.++++.
T Consensus 37 ~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~ 115 (386)
T 2bnx_A 37 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 115 (386)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred CcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 334455554 57788888888754322111 12347888899999999876666666666678889999999989999
Q ss_pred HHHHHHHHHHHhccCCc-cc-hHHHH----------hcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhccChh------h
Q 008781 223 VQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN------I 283 (554)
Q Consensus 223 v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~------~ 283 (554)
++..++..|..+|.... .+ ...+. +..-+..++..+. +.+.+.+..++..+-.+..+.++ .
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~L 195 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 195 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999988887443 23 22222 2234556777776 44566776666666666655443 2
Q ss_pred HHHHHHcCCHHHHHHHhccCChHHHHH
Q 008781 284 KKEVLAAGALQPVIGLLSSCCSESQRE 310 (554)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~~~~~ 310 (554)
+..+...|+.+.+-.+-...++.+...
T Consensus 196 R~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 196 RSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHCChHHHHHHHhccCChhHHHH
Confidence 344445555555444433344544433
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.84 E-value=3.6 Score=39.75 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCcchhh-hhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCc--c-hhHHHhhCcccccc
Q 008781 346 DVQLREMSAFALGRLAQDMHNQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--N-VADFIRVGGVQKLQ 421 (554)
Q Consensus 346 ~~~v~~~a~~~L~~L~~~~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~-~~~~~~~~~i~~L~ 421 (554)
+......++.+|..+..+..+...+ ...+++..+...+.++++.++..++..|..+|..++ + ...+++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~-------- 142 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLE-------- 142 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHH--------
Confidence 4567888999999998665555444 445678889999999999999999998888887654 2 222222
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHh-hCCHHHHHHHHHHHHhhcCCch-------hhHHHHHcCcHHH
Q 008781 422 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDD-------QRTIFIDGGGLEL 493 (554)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~l~~ 493 (554)
++..........-+..++..++ ..+.+.+..+...+..+...++ -|..|...|..+.
T Consensus 143 ---------------Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i 207 (386)
T 2bnx_A 143 ---------------AMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV 207 (386)
T ss_dssp ---------------HHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH
T ss_pred ---------------HHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH
Confidence 1111111112234555666665 4667777777777777755543 4556666766666
Q ss_pred HHHhhCCCChhHHH
Q 008781 494 LLGLLGSTNPKQQL 507 (554)
Q Consensus 494 L~~ll~~~~~~v~~ 507 (554)
|..+-...++.+..
T Consensus 208 l~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 208 LQELREIENEDMKV 221 (386)
T ss_dssp HHHHTTCCCHHHHH
T ss_pred HHHHhccCChhHHH
Confidence 66555556665543
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.71 E-value=21 Score=39.67 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=99.1
Q ss_pred CHHHHHHHhcc----CChHHHHHHHHHHHHHh----cCCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 008781 292 ALQPVIGLLSS----CCSESQREAALLLGQFA----ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 292 ~l~~L~~lL~~----~~~~~~~~a~~~L~nl~----~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~~~ 363 (554)
.+..+..++.+ .++.++..+..+++.+. ...+.|...++ ..+...+.+.+...+..-+..++.+|+|+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 34455666654 34566777777776664 22222211111 11233344445567777788999999999642
Q ss_pred CCcchhhhhcCCHHHHHHHhcC-------CChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHH
Q 008781 364 MHNQAGIAHNGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 436 (554)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~ 436 (554)
..++.|..++.. ....++..|+++|.+++...+.
T Consensus 471 ----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~----------------------------- 511 (1056)
T 1lsh_A 471 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR----------------------------- 511 (1056)
T ss_dssp ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-----------------------------
T ss_pred ----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-----------------------------
Confidence 246667676632 2356888999999999754321
Q ss_pred HHHHHHHHHhhchHHHHHHHH--hhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHH
Q 008781 437 TLKRLEEKIHGRVLNHLLYLM--RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVAL 513 (554)
Q Consensus 437 ~~~~l~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L 513 (554)
.+-+.++.+. ...++++|..|+..|..-.-... .+..+...+. +.+..|.......|
T Consensus 512 -----------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l 571 (1056)
T 1lsh_A 512 -----------KVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVA---------LVSMVAVRLRREPNLQVASFVYSQM 571 (1056)
T ss_dssp -----------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHH---------HHHHHHHHHhhCchHHHHHHHHHHH
Confidence 0134555666 45788999988888854322211 1234444444 35667777777777
Q ss_pred HHHHhhc
Q 008781 514 FKLANKA 520 (554)
Q Consensus 514 ~~L~~~~ 520 (554)
.++++..
T Consensus 572 ~sla~s~ 578 (1056)
T 1lsh_A 572 RSLSRSS 578 (1056)
T ss_dssp HHHTTCC
T ss_pred HHHHhcC
Confidence 7777654
No 130
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=86.60 E-value=19 Score=32.92 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHH
Q 008781 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (554)
Q Consensus 55 ~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (554)
+-.....+..++.+.-+....|......|+..|-.++.+-++--.+.+.. .+.|-.++..... ++.+++
T Consensus 20 Fs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~----------~~~~rE 88 (315)
T 3qml_C 20 FSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENL----------PLTLRE 88 (315)
T ss_dssp THHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTS----------CHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccC----------ChhHHH
Confidence 33444555555555422234455577889999999999865555555422 4555555532222 238999
Q ss_pred HHHHHHHHhc-CChhhHHHHHHc--CChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 008781 135 GSAFALGLLA-VKPEHQQLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (554)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~ 211 (554)
.|+++++..- ++|.....+... ..+..++.-|....... ......++..-+.+|.-|....... ...++..
T Consensus 89 ~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~-~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~ 162 (315)
T 3qml_C 89 LSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSN-HRSSNILIKRYLSILNELPVTSEDL-----PIYSTVV 162 (315)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHhcChHhh-----hhccHHH
Confidence 9999999877 888887777654 45555555544321110 0011277888888998888744322 2457788
Q ss_pred HHHhhcCC--CHHHHHHHHHHHHHhc
Q 008781 212 LVELLEFT--DTKVQRAAAGALRTLA 235 (554)
Q Consensus 212 L~~ll~~~--~~~v~~~a~~~L~~l~ 235 (554)
|.+++... ++.++..++..+..+-
T Consensus 163 L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 163 LQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 88888766 8888888888777665
No 131
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=84.22 E-value=27 Score=39.46 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh--ccCChHHHHHHHHHHHHHhcC-----CcccHHHHHHcC
Q 008781 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAAT-----DSDCKVHIVQRG 333 (554)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~~~~a~~~L~nl~~~-----~~~~~~~~~~~~ 333 (554)
.+...|..|-..|..+-...+ ....+...| .+.+..++..|+.+|.+.... +++.+ ..++..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p~----------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k-~~Ir~~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKCP----------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEK-VYLKNS 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHH-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCch----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHH-HHHHHH
Confidence 367788888888877743321 333334333 344678888999999887532 22222 233333
Q ss_pred CHHHHHHHhC---CCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccCCcchhH
Q 008781 334 AVRPLIEMLQ---SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 410 (554)
Q Consensus 334 ~~~~L~~~l~---~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (554)
++..+..... +....++...+.++..++...-. ..+ .+.++.|+.++.+ ++.....++.+|..++......
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~W--p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~-- 167 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHW--PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF-- 167 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTC--TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccc--hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc--
Confidence 4444443321 14578999999999998864321 111 2567888888866 5566777888888876421100
Q ss_pred HHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHh-------------------hCCHHHHHHHHHH
Q 008781 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-------------------VAEKGVQRRVALA 471 (554)
Q Consensus 411 ~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~ll~-------------------~~~~~v~~~a~~~ 471 (554)
+.. .. ......+..+...+. .++..+...+. ..+..+...++.+
T Consensus 168 ----~~~---~~--~r~~~l~~~l~~~~~--------~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~ 230 (1204)
T 3a6p_A 168 ----QTL---PP--QRRRDIQQTLTQNME--------RIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNT 230 (1204)
T ss_dssp ----CCS---CH--HHHHHHHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred ----cch---HH--HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHH
Confidence 000 00 000000111111111 11222222222 1245678888889
Q ss_pred HHhhcCCchhhHHHHHcC--cHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 472 LAHLCSPDDQRTIFIDGG--GLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 472 L~~l~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+.+...+-..... .+.. .++.+..++. +++++..|..+|..+....
T Consensus 231 l~~~l~Wi~~~~i-~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 231 LAGYIDWVSMSHI-TAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHTTTTTSCHHHH-HTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHhccCHHHH-HhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 9888776543322 2322 5666666654 5789999999999999754
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=78.64 E-value=16 Score=30.14 Aligned_cols=94 Identities=7% Similarity=0.044 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHHH
Q 008781 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL 254 (554)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L 254 (554)
.++|......+..+..- ....+ .++..|.+-|++.++.++..|+..|-.+..+ .......+.+..+++.|
T Consensus 30 ~~Dw~~~leicD~I~~~---~~~~k------eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el 100 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGST---PNGAK------DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV 100 (163)
T ss_dssp SCCHHHHHHHHHHHHHS---SSHHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCC---CccHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 34556666666555441 22222 2456788888999999999999999888864 34456566667788888
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHHhc
Q 008781 255 ILMLRS-EDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 255 ~~ll~~-~~~~v~~~a~~~L~~L~~ 278 (554)
+.++.. .++.|+..++..+...+.
T Consensus 101 ~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 101 RAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHH
Confidence 888874 578999999988877653
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=78.41 E-value=40 Score=30.80 Aligned_cols=136 Identities=12% Similarity=0.085 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhc--C
Q 008781 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--G 207 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~--~ 207 (554)
.+-...++..|..++++-++--.+.... ...|-+++-....+ ..+++.+..+|+.-...+|+.-..+... .
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~------~~~rE~aarII~ssLRNNP~Al~~V~~~~p~ 114 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLP------LTLRELSTRVITSCLRNNPPVVEFINESFPN 114 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSC------HHHHHHHHHHHHHHHTTCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCC------hhHHHHHHHHHHHHHccCHHHHHHHHHhChh
Confidence 3567789999999998888887777643 45555555322221 2799999999999999899887766653 3
Q ss_pred ChHHHHHhhcC-------CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHh
Q 008781 208 GIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLV 277 (554)
Q Consensus 208 ~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~L~ 277 (554)
.+..++.-|.. ....++..-+.+|..|....... ....+..|..++... ++.++..++..+..+-
T Consensus 115 fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 115 FKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 33444433322 24467778888888888743222 134577888877766 8889998888887764
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.03 E-value=9.6 Score=30.90 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=68.0
Q ss_pred cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHHH
Q 008781 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL 254 (554)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L 254 (554)
.++|......+..+..- .... ..++..|.+-+++.++.++..|+..|-.+..+ .......+.+..++..|
T Consensus 16 ~~dw~~~leicD~I~~~---~~~~------k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 16 EQDWSAIQNFCEQVNTD---PNGP------THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp SCCHHHHHHHHHHHHHS---SHHH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcC---CccH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 34556655555555442 1111 23456888888999999999999999988864 34566777778889999
Q ss_pred HHhhcC------CCHHHHHHHHHHHHHHhc
Q 008781 255 ILMLRS------EDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 255 ~~ll~~------~~~~v~~~a~~~L~~L~~ 278 (554)
++++.. .+..|+..++..+...+.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 998863 478999999998887764
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=74.42 E-value=9.9 Score=31.69 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=68.9
Q ss_pred ccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHHH
Q 008781 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPT 253 (554)
Q Consensus 175 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~ 253 (554)
...+|......+..+..- ....+ .++..|.+-+++.++.++..|+..|-.+..+. ......+.+..+++.
T Consensus 27 ~~~Dw~~ileicD~I~~~---~~~~k------~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKE---LEGPQ------IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SSCCHHHHHHHHHHHHHS---TTHHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC---CccHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 345566666666665542 12222 24567888899999999999999999888742 455666777788999
Q ss_pred HHHhhcC------CCHHHHHHHHHHHHHHhcc
Q 008781 254 LILMLRS------EDSAIHYEAVGVIGNLVHS 279 (554)
Q Consensus 254 L~~ll~~------~~~~v~~~a~~~L~~L~~~ 279 (554)
|+.++.. .+..|+..++..+...+..
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998862 3679999999999887643
No 136
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=73.06 E-value=52 Score=29.42 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=92.2
Q ss_pred hHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHH
Q 008781 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (554)
Q Consensus 56 ~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~ 133 (554)
...-.++++.|.......+ +.+...+.....++- ++..-.. +++.++.+....+. ++|
T Consensus 11 ~~~~~~v~~lln~A~~~~~---~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~~~~~~------------~vr 70 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP---STKCELLAKVQETVLGSCAELAEE-----FLESVLSLAHDSNM------------EVR 70 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGGGCSCH------------HHH
T ss_pred ccHHHHHHHHHHHhhhcCc---HHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhccCChH------------HHH
Confidence 3445667777777654333 356677777777554 4544333 36777776555443 999
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhh-------cCch----hHH
Q 008781 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-------ENSS----IKT 201 (554)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~-------~~~~----~~~ 201 (554)
...+..+...+ ..++... ..++.|..++++.+. .+.+.++.+..++.. .++. ...
T Consensus 71 k~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d~d~--------~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~ 137 (257)
T 3gs3_A 71 KQVVAFVEQVCKVKVELLP-----HVINVVSMLLRDNSA--------QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQ 137 (257)
T ss_dssp HHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 99999999999 5555432 235677778875443 888888877766642 1221 111
Q ss_pred HH-HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008781 202 RV-RMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (554)
Q Consensus 202 ~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 235 (554)
.. .-...-..++.++.+.+..++..+++.+..+.
T Consensus 138 ~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 138 AWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 11 11223356677778889999999988877754
No 137
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=72.89 E-value=42 Score=32.01 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc
Q 008781 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (554)
Q Consensus 223 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~ 302 (554)
.+...+.-+..+..+.+.. +. .++++.++.+-.+.+.++|++.+.+|...+....+.. ..+++.|..++.+
T Consensus 41 ~Kl~~L~q~~EL~l~~dps---Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d 111 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT---LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRD 111 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG---GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccCHH---HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcC
Confidence 4555555566654422111 22 4578999999999999999999999999876544432 2357788888988
Q ss_pred CChHHHHHHHHHHHHHh--------cCCcc--cHHHHHH--cCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 303 CCSESQREAALLLGQFA--------ATDSD--CKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 303 ~~~~~~~~a~~~L~nl~--------~~~~~--~~~~~~~--~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
.++.+.+.++.+..++- ..... ......+ ..+-..++.++.+.+..++-.++.++-.+.
T Consensus 112 ~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 88889888877766653 11110 0011111 122344555666788889999998888865
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=71.82 E-value=20 Score=28.70 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=54.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~ 277 (554)
++..+.+-+++.++.++..|+..|-.+..+. ......+.+..+++.+..++...++.|+..++..+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4567888888999999999999888887642 334555666677888888887778899999998887775
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.13 E-value=27 Score=30.59 Aligned_cols=97 Identities=10% Similarity=0.124 Sum_probs=66.9
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCH
Q 008781 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNAL 251 (554)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~ 251 (554)
....++|......+..+.. .....+. .+..|.+-|++.++.++..|+..|-.+..+ .......+.+..++
T Consensus 20 ~~~~~dw~~ileicD~I~~---~~~~~k~------a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl 90 (226)
T 3zyq_A 20 LLLETDWESILQICDLIRQ---GDTQAKY------AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTM 90 (226)
T ss_dssp TCSSCCHHHHHHHHHHHHT---TSSCHHH------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHH
T ss_pred CCCCcCHHHHHHHHHHHhC---CCccHHH------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHH
Confidence 3344556777666666642 1222222 356788888999999999999999888764 23345566666777
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 008781 252 PTLILMLR-SEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 252 ~~L~~ll~-~~~~~v~~~a~~~L~~L~~ 278 (554)
+.|..++. ..+..|+..++..+...+.
T Consensus 91 ~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 91 EELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 77777776 3577899999988877753
No 140
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=69.37 E-value=80 Score=30.10 Aligned_cols=87 Identities=11% Similarity=0.190 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhh
Q 008781 180 SVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (554)
Q Consensus 180 ~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (554)
+.+-..+.-+..+..+ ++. .-..+++.++.+..+.+..+++..+..|...+....+. + ..+++.|..++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el---~--~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL---L--LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG---H--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHH
Confidence 3444555555565442 332 22567888999888889999999999999888643333 2 23477888888
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 008781 259 RSEDSAIHYEAVGVIGNL 276 (554)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L 276 (554)
.++++.|.+.++.+..++
T Consensus 110 ~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQL 127 (386)
T ss_dssp TCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 888999999888888777
No 141
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=66.41 E-value=50 Score=26.63 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=56.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccC-CccchHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~------~~~~v~~~a~~~L~~L~~ 278 (554)
.+..|.+-+.+.++.++..|+..|-.+..+ ...+...+....+++.|++++.. .+..|+..++..+...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 456888888999999999999998888764 33455667777888999998863 578999999999988764
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=54.85 E-value=28 Score=27.76 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=52.3
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (554)
++..|..-+.+.++.++..|+..|-.+..+ ......+.....+..|+.++...++.|+......+..-+..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 467777788889999999998888877433 23344444555666677777778899999999988877654
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=54.29 E-value=86 Score=25.44 Aligned_cols=97 Identities=9% Similarity=0.061 Sum_probs=65.5
Q ss_pred ccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhccCC-ccchHHHHhcCC
Q 008781 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKN-DENKNQIVECNA 250 (554)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~ 250 (554)
....++|......+..+.. .....+ .++..|.+-++ +.++.++..|+..|-.+..+. +.....+.+..+
T Consensus 28 ~l~~~Dw~~~leicD~I~~---~~~~~k------~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~f 98 (157)
T 1elk_A 28 SLQSEDWALNMEICDIINE---TEEGPK------DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDF 98 (157)
T ss_dssp TCSSCCHHHHHHHHHHHHH---SSSHHH------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHH
T ss_pred CCCCcCHHHHHHHHHHHhC---CCccHH------HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHH
Confidence 3334456766666665543 122222 24567888887 478999999999998888643 455666777778
Q ss_pred HHH-HHHhhc---CCCHHHHHHHHHHHHHHhc
Q 008781 251 LPT-LILMLR---SEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 251 ~~~-L~~ll~---~~~~~v~~~a~~~L~~L~~ 278 (554)
++. |++++. ..+..|+..++..+...+.
T Consensus 99 l~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 99 VESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 887 778774 2346899999888877653
No 144
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=53.39 E-value=69 Score=35.10 Aligned_cols=218 Identities=12% Similarity=0.048 Sum_probs=109.6
Q ss_pred CHHHHHHHhccCChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhC----CCCHHHHHHHHHHHH--HHhcCCC
Q 008781 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALG--RLAQDMH 365 (554)
Q Consensus 292 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~----~~~~~v~~~a~~~L~--~L~~~~~ 365 (554)
++.-|+.+-.+...+++..|-.+|......-+..... ++|.+++.|+ +.+.+-.+-|+.+|. .+...-.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 4556777777788899999999998887655555443 3566666664 334444445555444 1110000
Q ss_pred cchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC---CcchhHHHhhCccccccchhhhhhhhHHHHHHHH-HHH
Q 008781 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN---EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL-KRL 441 (554)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~-~~l 441 (554)
+..-.-...++.|+++.+.+.++++..+-.+...+... +.... ..+...+..+....-.+.....-..... ++.
T Consensus 209 -~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 209 -TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp -GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred -cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 00011123455666666777777766665554444332 11111 1111111111100000000000000000 001
Q ss_pred HH--HHhhchHHHHHHHHhh-CC--HHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHH
Q 008781 442 EE--KIHGRVLNHLLYLMRV-AE--KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (554)
Q Consensus 442 ~~--~~~~~~l~~L~~ll~~-~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 516 (554)
.. ..-.++...|+...+. .+ -.....+++.+.++....+.. ....++..+++.+.+++|.+|..|..++..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~---~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK---PDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC---CCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 00 0112344555566522 34 566777778866675433211 1122467788889999999999999998777
Q ss_pred Hhh
Q 008781 517 ANK 519 (554)
Q Consensus 517 ~~~ 519 (554)
...
T Consensus 364 l~~ 366 (997)
T 1vsy_5 364 CNK 366 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.71 E-value=46 Score=27.33 Aligned_cols=71 Identities=7% Similarity=-0.032 Sum_probs=52.8
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhCC-CChhHHHHHHHHHHHHHhh
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~ 519 (554)
++..|..-+.+.++.++..|+..|-.+..+ ......+.....+..|+.++.. .++.|+..+...+..-+..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 467777788889999999999988888433 3344455555667777777764 6789999998888776654
No 146
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.85 E-value=16 Score=32.78 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHhccCCcc-chHHHHhcCCHHHHHHhh----cC----CCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 218 FTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILML----RS----EDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~ll----~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
+.++..+.-++++++|+.. ++. .+..+.+......++..+ .+ .+..++..+...+.|++......+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCchhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 4567889999999999987 444 455554332233344333 21 2567888999999999753111000
Q ss_pred HcCCHHHHHHHhcc---------CChHHHHHHHHHHHHHhcCCc
Q 008781 289 AAGALQPVIGLLSS---------CCSESQREAALLLGQFAATDS 323 (554)
Q Consensus 289 ~~~~l~~L~~lL~~---------~~~~~~~~a~~~L~nl~~~~~ 323 (554)
+......+..++.. .+.+....++.+|+++...++
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 11233344444431 366888889999999985443
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.70 E-value=85 Score=27.16 Aligned_cols=93 Identities=6% Similarity=0.074 Sum_probs=62.5
Q ss_pred cchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCC-ccchHHHHhcCCHHHH
Q 008781 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTL 254 (554)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L 254 (554)
.++|......+..+.. +....+ ..+..|.+-|++.++.++..|+..|-.+..+. ......+.+..+++.|
T Consensus 20 ~~dw~~~leicd~i~~---~~~~~k------~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l 90 (220)
T 1dvp_A 20 EPDWPSILLICDEINQ---KDVTPK------NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (220)
T ss_dssp SCCHHHHHHHHHHHHT---TSSCHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CcCHHHHHHHHHhhcC---CCcCHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHH
Confidence 3455665555555532 122222 23557788888999999999999999888643 3345566666678888
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHh
Q 008781 255 ILMLR-SEDSAIHYEAVGVIGNLV 277 (554)
Q Consensus 255 ~~ll~-~~~~~v~~~a~~~L~~L~ 277 (554)
+.++. ..+..|+..++..+...+
T Consensus 91 ~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 91 SSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHH
Confidence 88776 346788888887776665
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.56 E-value=26 Score=28.34 Aligned_cols=72 Identities=11% Similarity=-0.036 Sum_probs=57.0
Q ss_pred CHHHHHHHhccCChHHHHHHHHHHHHHhcC-CcccHHHHHHcCCHHHHHHHhCC------CCHHHHHHHHHHHHHHhcC
Q 008781 292 ALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 292 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~L~~~l~~------~~~~v~~~a~~~L~~L~~~ 363 (554)
++..|..-+.+.++.++..|+.+|-.+... +..+...+....++..|+.++.. .+..|+..++..+...+..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566778888889999999999988888754 34555667778889999988863 4778999999999988754
No 149
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=49.54 E-value=52 Score=36.09 Aligned_cols=102 Identities=15% Similarity=0.025 Sum_probs=60.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcc----CChHHHHHHHHHHH-----HHhc
Q 008781 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLG-----QFAA 320 (554)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~~~~~a~~~L~-----nl~~ 320 (554)
++..|+.+..+..++||..|-.+|......-+..... +++.+++.|+. .+.+-.+.|+.+|. ....
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 4677888888999999999999999987655544333 35566666643 34555556666543 1111
Q ss_pred CCcccHHHHHHcCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 321 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
.+-.+ -..+++.|+.....+.+.++..+-.+...+.
T Consensus 209 ~d~~~-----~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~ 244 (997)
T 1vsy_5 209 TDYKD-----IGRLIFLLIECCRVNELEIGMYADKILTDIV 244 (997)
T ss_dssp GCHHH-----HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHH
T ss_pred cChHH-----HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Confidence 11111 1234556666555556666655554544444
No 150
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.54 E-value=57 Score=26.30 Aligned_cols=72 Identities=10% Similarity=-0.061 Sum_probs=54.8
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhCC------CChhHHHHHHHHHHHHHhhc
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGS------TNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~ 520 (554)
++..|..-+.+.++.++..|+..|-.+..+ ......+.....+..|+.++.. .++.|+......+..-+..-
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467777788899999999999988888432 3345556666677888888863 57899999999888877653
No 151
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=46.69 E-value=1.6e+02 Score=26.23 Aligned_cols=131 Identities=7% Similarity=0.083 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 008781 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (554)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (554)
..+...+.-...+..+.+.. +. .++++.++.+..+.+.++|++.+..+...+...++... ..++.|..++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~---ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~ 100 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE---LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLR 100 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccCHh---HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc
Confidence 46666666666665532211 22 23677788877788899999999999998765444322 35678888888
Q ss_pred cCChHHHHHHHHHHHHHh--------cCCcc--cHHHHHH--cCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008781 302 SCCSESQREAALLLGQFA--------ATDSD--CKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (554)
Q Consensus 302 ~~~~~~~~~a~~~L~nl~--------~~~~~--~~~~~~~--~~~~~~L~~~l~~~~~~v~~~a~~~L~~L~ 361 (554)
+.++.+.+.+..+..++- ..+.. ......+ ..+=..++.++.+.+..++-.+..++-.+.
T Consensus 101 d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 101 DNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 888888888877666653 11110 0111111 122234555556667777777777776654
No 152
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=46.05 E-value=28 Score=33.60 Aligned_cols=105 Identities=7% Similarity=-0.013 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcC-ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 008781 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (554)
+..+..+++++.|+..++.+.+.++... ....++..+...-..........++..++..+.|++...-..+. ....
T Consensus 276 ~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el 352 (425)
T 3pst_A 276 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 352 (425)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTH
T ss_pred hhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 3888999999999998877555554332 24455555532211000001127888888999999862211110 0123
Q ss_pred hHHHHHhhc---------CCCHHHHHHHHHHHHHhccC
Q 008781 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~ 237 (554)
...+.+++. ..+++....++.+|+++...
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 345555554 24788889999999999863
No 153
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.76 E-value=19 Score=32.26 Aligned_cols=139 Identities=8% Similarity=0.013 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhcCChh-hHHHHHHcCC
Q 008781 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPE-HQQLIVDNGA 158 (554)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~i~~~g~ 158 (554)
+.-++..++-+..++... +.+..++...-.+ . .+..+..+++++.|+..++. .+..+.....
T Consensus 71 ~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~-~----------~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~ 133 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGN-K----------NITLTMLTVRILVNCFNNENWGVKLLESNQV 133 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTC-S----------SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHH
T ss_pred cchHHHHHHHHHcCCchH------HHHHHHHHHhcCC-C----------chhHHHHHHHHHHHcccCCchHHHHHhcchh
Confidence 445677777766654321 2333333322221 1 23789999999999997777 4555544322
Q ss_pred hHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC---------CCHHHHHHHHH
Q 008781 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF---------TDTKVQRAAAG 229 (554)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~v~~~a~~ 229 (554)
...++..+...-.+........++..++..+.|++...-..+. +......+++.+.. .+++....++.
T Consensus 134 ~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~Lv 210 (253)
T 3gae_A 134 YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTV 210 (253)
T ss_dssp HTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 3444444322111000001117888889999999862111110 11223445554441 37788888999
Q ss_pred HHHHhccCC
Q 008781 230 ALRTLAFKN 238 (554)
Q Consensus 230 ~L~~l~~~~ 238 (554)
+|+++...+
T Consensus 211 AlGtL~~~~ 219 (253)
T 3gae_A 211 AYGNLATVE 219 (253)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhCc
Confidence 999998643
No 154
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=44.14 E-value=75 Score=30.68 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHhccCCccc-hHHHHhcCCHHHHHHhhcC
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRS 260 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~ 260 (554)
..++.+++-+..+.+.. +.+..++ ..+.+..+..+..++++++|+.. ++.. +..+........++..+.+
T Consensus 244 FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 244 TPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp HHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHH
Confidence 34666666666543322 1232233 23334577899999999999987 4553 4344332234455554421
Q ss_pred --------CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---------cCChHHHHHHHHHHHHHhcCCc
Q 008781 261 --------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------SCCSESQREAALLLGQFAATDS 323 (554)
Q Consensus 261 --------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~~~~~a~~~L~nl~~~~~ 323 (554)
.+..++..+...+.|++......+. +...+..+..++. ..+.+....++.+|++|...++
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 2457888888999999753211000 0123345555554 2477888999999999985433
No 155
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=42.53 E-value=33 Score=28.49 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=56.6
Q ss_pred CHHHHHHHhccCChHHHHHHHHHHHHHhcCC-cccHHHHHHcCCHHHHHHHhCC------CCHHHHHHHHHHHHHHhcC
Q 008781 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQD 363 (554)
Q Consensus 292 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~~~~L~~~l~~------~~~~v~~~a~~~L~~L~~~ 363 (554)
++..|.+-+.+.++.++..|+.+|-.+...+ ..+...+....++..|+.++.. .+..|+..++..+...+..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567888888899999999999888887553 3455567777889999998862 3678999999999988753
No 156
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=41.76 E-value=26 Score=33.11 Aligned_cols=105 Identities=7% Similarity=-0.013 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcC-ChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 008781 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (554)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~i~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (554)
+..+..+++++.|+-.++.+.+.++... ....++..+...-..........++..++..+.|++......+. ....
T Consensus 213 ~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el 289 (362)
T 3l3f_X 213 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 289 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTH
T ss_pred hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 3888999999999997777555444332 12334444422111000001127888888999999862211110 0123
Q ss_pred hHHHHHhhc---------CCCHHHHHHHHHHHHHhccC
Q 008781 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFK 237 (554)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~ 237 (554)
...+.+++. ..+++....++.+|+++...
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 345666655 25788889999999999863
No 157
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=39.56 E-value=4.6e+02 Score=29.60 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh-ccCChHHHHHHHHHHHHHhcCCcccHHH---------HHH
Q 008781 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVH---------IVQ 331 (554)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~---------~~~ 331 (554)
...+....++.+.++....+ ...++.++-++ -+.+...++.+-.++.+....+--.... .+-
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 56667777777777643221 13444444333 2223345666666666655432111110 112
Q ss_pred cCCHHHHHHH----hCCCCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCCChhHHHHHHHHHHHcccC
Q 008781 332 RGAVRPLIEM----LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (554)
Q Consensus 332 ~~~~~~L~~~----l~~~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (554)
...++.++.+ +.+.++.++.-+......+-...+ ...+..++..|+..+-+++..-...|+.+|..|+..
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd---~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~ 468 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD---TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL 468 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc
Confidence 3455655544 457888898888887777655432 223334556666666566655555688888887753
No 158
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=39.22 E-value=1.9e+02 Score=24.92 Aligned_cols=127 Identities=9% Similarity=-0.052 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhc-C-ChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 008781 131 EVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (554)
Q Consensus 131 ~v~~~a~~~L~~l~-~-~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (554)
+.+..++.++.... . .++. ++.+-.++...+ .|++....+.++..++..++.. .
T Consensus 70 E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~-------nWd~~D~~a~~~~~~~~~~~~~--------~ 125 (220)
T 2b6c_A 70 EYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKA-------WWDSVDAWRKFFGSWVALHLTE--------L 125 (220)
T ss_dssp HHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTC-------SHHHHHHHHHHHHHHHHHSGGG--------H
T ss_pred HHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCC-------cHHHHHHHHHHHHHHHHHChHH--------H
Confidence 88888888888765 2 2211 222223333322 2577777667777776644431 2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHHH
Q 008781 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (554)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 288 (554)
.+.+...+.+++.-+++.|+..+.... ....... .++.+-..+.+++.-|+....|+|..++..+++....++
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~l~~~--~~~~~~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQLMLK--EKTNQDL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTTTTCG--GGCCHHH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH--HCCCHHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 346778888999998888877553222 1111111 144444577788999999999999999988777644444
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=38.45 E-value=76 Score=25.21 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=44.1
Q ss_pred hchHHHHHHHHhhCCHHHHHHHHHHHHhhcCCch--hhHHHHHcC-cHHHHHHhhCCCC--------hhHHHHHHHHHHH
Q 008781 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGG-GLELLLGLLGSTN--------PKQQLDGAVALFK 515 (554)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~-~l~~L~~ll~~~~--------~~v~~~a~~~L~~ 515 (554)
..+++.|..-|.+.++.++..++++|-.||.... ....+.+.- .|..+..+-..++ ..||..|..++.-
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 3568888899999999999999999999986533 333333332 1222222222222 3467666665555
Q ss_pred HHh
Q 008781 516 LAN 518 (554)
Q Consensus 516 L~~ 518 (554)
|-.
T Consensus 128 l~d 130 (140)
T 1vdy_A 128 IFS 130 (140)
T ss_dssp HTC
T ss_pred HhC
Confidence 443
No 160
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.18 E-value=51 Score=28.77 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=52.5
Q ss_pred hHHHHHHHHhhCCHHHHHHHHHHHHhhcCC--chhhHHHHHcCcHHHHHHhhC-CCChhHHHHHHHHHHHHHhh
Q 008781 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANK 519 (554)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~ 519 (554)
++..|..-+.+.++.++..|+..|-.+..+ ......+.....+..|..++. ..++.|+..+...+...+..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 467777788899999999999988888544 223444555555666777765 46778999999988887754
No 161
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=37.95 E-value=62 Score=30.52 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhccCCccc-hHHHHhcCCHHHHHHhhc-
Q 008781 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLR- 259 (554)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~- 259 (554)
..++.+++-+..+.+.. +.+..++. .+.+..+..+..++++++|+-. ++.. +..+........++..+.
T Consensus 181 FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 181 TPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp HHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred chHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcc-CcchHHHHHhcchhHHHHHHHHHH
Confidence 34666666666533321 22333332 3335567899999999999987 4553 433332111233333331
Q ss_pred -------CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---------cCChHHHHHHHHHHHHHhcCC
Q 008781 260 -------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------SCCSESQREAALLLGQFAATD 322 (554)
Q Consensus 260 -------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~~~~~a~~~L~nl~~~~ 322 (554)
..+..++..+...+.|++......+. ....+..+..++. ..+.+....++.+|++|...+
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 12457888888999999753221000 0123345555554 247788999999999998543
No 162
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=37.05 E-value=5e+02 Score=29.30 Aligned_cols=171 Identities=12% Similarity=0.035 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHh-CCCCHHHHHHHHHHHHHHhcCCCcchhhh----------hc
Q 008781 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIA----------HN 373 (554)
Q Consensus 305 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~L~~~~~~~~~l~----------~~ 373 (554)
..+...-...+.++....+ ...+..++-++ -+.+...+..+-.++.+-.....-...++ -.
T Consensus 324 k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~ 395 (1323)
T 3s4w_B 324 KTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLK 395 (1323)
T ss_dssp HHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHH
Confidence 3444444555666543221 23444443322 23344566677777777665443322211 12
Q ss_pred CCHHHHH----HHhcCCChhHHHHHHHHHHHcccCCcchhHHHhhCccccccchhhhhhhhHHHHHHHHHHHHHHHhhch
Q 008781 374 GGLVPLL----KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (554)
Q Consensus 374 ~~l~~L~----~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 449 (554)
...+.++ .++++.++.++..+......+....+. + .+..+
T Consensus 396 ~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~---~---------------------------------~qqeV 439 (1323)
T 3s4w_B 396 DICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT---Y---------------------------------CQQEV 439 (1323)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH---H---------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc---h---------------------------------hHHHH
Confidence 3344444 345677788887777766665443321 0 12234
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhhcCCchhhHHHHHcCcHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 008781 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (554)
Q Consensus 450 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (554)
+..|+..+-+++..-...|+.+|..|+......-.. -.-.+..++..+.+-+...-+.....|+.++...
T Consensus 440 l~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~-~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~ 509 (1323)
T 3s4w_B 440 VGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRL-NAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQ 509 (1323)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHH-THHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCC
Confidence 566666655555444455777777765432211100 0112345555555555544445677777777654
No 163
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=36.53 E-value=1.5e+02 Score=24.41 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=59.1
Q ss_pred cccHHHHHHcCCHHHHHHHhCC------CCHHHHHHHHHHHHHHhcCCCcchhhhhcCCHHHHHHHhcCC--ChhHHHHH
Q 008781 323 SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNA 394 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~~l~~------~~~~v~~~a~~~L~~L~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a 394 (554)
...+..+++.|++..+-.||.. +...+|...+.+|.+|- -....+..+|.-..++.+..++ .++.+..|
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla 142 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP---VKTEHLKESGLGRVVIFYTKSKRVEAQLARLA 142 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC---CCHHHHhhCCCCceeeehhcCCcccHHHHHHH
Confidence 5667789999999999999972 46789999999998873 3355667776666666665554 46788888
Q ss_pred HHHHHHcccC
Q 008781 395 AFALYGLADN 404 (554)
Q Consensus 395 ~~~L~~l~~~ 404 (554)
-..+...++.
T Consensus 143 ~~Li~~WsRp 152 (170)
T 3nfq_A 143 EKLIAEWTRP 152 (170)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 164
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=32.98 E-value=21 Score=30.42 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccCh-----hhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchH
Q 008781 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE-----EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (554)
Q Consensus 56 ~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~ 130 (554)
...+|-++.++....+..-.|.......++....+..|+ .+... .+|.++..+-+..-.. .
T Consensus 39 ~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~-----LipsvLtCll~k~l~~---------~ 104 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQ-----ILPSLLTCVIGKSIVD---------D 104 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHH-----HHHHHHHHHHCTTCCC---------H
T ss_pred hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHH-----HHHHHHHHHHhcccCH---------H
Confidence 344666666665554444345556666677777777654 33443 4677777665443311 1
Q ss_pred HHHHHHHHHHHHhc--CC---hhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHHHHHHHHhh
Q 008781 131 EVEKGSAFALGLLA--VK---PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (554)
Q Consensus 131 ~v~~~a~~~L~~l~--~~---~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 194 (554)
.+|+.|+.+|+.+| .+ +..+.. ++..+.+.+.++..+. .....|+..|..+-.
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y~~L~~R-----I~~tl~k~l~dp~~~l------~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSYKTLAPR-----VLKTLKGVWMDPNRSE------DSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHH-----HHHHHHHHHTCTTSCH------HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHhCccCchHHHH-----HHHHHHHHHcCCCCCh------HHHHHHHHHHHHhHH
Confidence 79999999999999 11 223222 3455666665554322 667777777777643
No 165
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=31.46 E-value=3.8e+02 Score=26.28 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhhccchHhhHHHHHHHHHHHHHhccChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCcchHHHH
Q 008781 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (554)
Q Consensus 54 ~~~~~v~~~v~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~ 133 (554)
+....++.+-+.|.+......-|.....+-+..+...+.-++....+- ++.++.-|.++.. .+.
T Consensus 70 ~~~~ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~Fd~VLevys----ve~i~~aL~S~~~------------~l~ 133 (500)
T 3vld_A 70 DVKPLLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADFDDVLEVYS----AEDLVKALRSEID------------PLK 133 (500)
T ss_dssp CCHHHHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCHHHHHHHSC----HHHHHHHHTSSCH------------HHH
T ss_pred cHHHHHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCHHHHHHhCC----HHHHHHHHhcCCh------------HHH
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCChHHHHHHHhccccCccccchhH-HHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 008781 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS-VIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (554)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (554)
..|++++. .++.+..+...+.+..+++++-+.+.+. . +...+=.++..++. ++-++..+. ....|.+
T Consensus 134 ~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i------~~vvn~IE~~~~~Lss-deLirrril-~nnl~lL 201 (500)
T 3vld_A 134 VAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVEN------DKLITAIEKALERLST-DELIRRRLF-DNNLPYL 201 (500)
T ss_dssp HHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCC------HHHHHHHHHHHHHHTT-SHHHHHHHH-TTTHHHH
T ss_pred HHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCc------HHHHHHHHHHHHHcCc-hHHHHHHHH-HHhHHHH
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhc
Q 008781 213 VELLEFTDTKVQRAAAGALRTLA 235 (554)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~l~ 235 (554)
...=++.++.+...-+..+.-+.
T Consensus 202 ~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 202 VSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceeHHHHHHHHHHHh
No 166
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=30.71 E-value=2.2e+02 Score=23.34 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=59.1
Q ss_pred hhhHHHHHHcCCHHHHHHHhcc------CChHHHHHHHHHHHHHhcCCcccHHHHHHcCCHHHHHHHhCC--CCHHHHHH
Q 008781 281 PNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREM 352 (554)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~ 352 (554)
......+++.|++..+..||.. ++..++...+.+|.++. -....+..+|+-..++-+-++ ..+..+.-
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 4566888999999999999963 35678888888998884 345567778777776655544 56788888
Q ss_pred HHHHHHHHhc
Q 008781 353 SAFALGRLAQ 362 (554)
Q Consensus 353 a~~~L~~L~~ 362 (554)
|-..+...++
T Consensus 142 a~~Li~~WsR 151 (170)
T 3nfq_A 142 AEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 167
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=29.66 E-value=2.8e+02 Score=24.04 Aligned_cols=129 Identities=10% Similarity=0.036 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHHHHH-HHHHHHhhcCchhHHHHHhcC
Q 008781 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA-DAITNLAHENSSIKTRVRMEG 207 (554)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~-~~L~~L~~~~~~~~~~~~~~~ 207 (554)
+.+..|+..+.... .+++. ++.+-.++...++ |++....+ .+++.+...++. .
T Consensus 76 E~r~~ai~~l~~~~k~~~~~~---------l~~~~~~l~~~~n-------Wd~~D~~a~~~~g~~~~~~p~--------~ 131 (232)
T 3jxy_A 76 EFQAAALDIMQKYKKHINETH---------IPFLEELIVTKSW-------WDSVDSIVPTFLGDIFLKHPE--------L 131 (232)
T ss_dssp HHHHHHHHHHHHTGGGCCGGG---------HHHHHHHHTSSCC-------HHHHHHHTTTHHHHHHHHCGG--------G
T ss_pred HHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHccCCC-------hHHHHHhhHHHHHHHHHHCHH--------H
Confidence 78877887776543 22222 3444455554322 46666553 455666654443 1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhccChhhHHHH
Q 008781 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (554)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 287 (554)
..+.+...+.+++.-+++.|+..+.... ...... ...+.+...+.+++.-|+....|+|..++..+++....+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~--~~~d~~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYK--QKMDEE-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCG--GGCCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHH--hCCCHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3356778889999999888876653221 111111 123455567788999999999999999998888765555
Q ss_pred HHc
Q 008781 288 LAA 290 (554)
Q Consensus 288 ~~~ 290 (554)
++.
T Consensus 205 l~~ 207 (232)
T 3jxy_A 205 VQN 207 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 168
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.01 E-value=61 Score=28.10 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=50.0
Q ss_pred hHHHHHhhcCCCCCccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHHcCChHHHHHHHhccccCccccchhHHHH
Q 008781 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (554)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (554)
+..|.+-|.+.++ .++..|+.+|-.+. -++.++..+.....+..|+.++.+... .+++.
T Consensus 44 ~r~l~krl~~~n~------------~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~-------~~Vk~ 104 (220)
T 1dvp_A 44 FAAIKKKMNSPNP------------HSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPH-------ENVRQ 104 (220)
T ss_dssp HHHHHHHHTCSSH------------HHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSC-------HHHHH
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCc-------HHHHH
Confidence 4455556666655 88889999998888 346677777777788888888875322 18888
Q ss_pred HHHHHHHHHhh
Q 008781 184 RAADAITNLAH 194 (554)
Q Consensus 184 ~a~~~L~~L~~ 194 (554)
.++..+..-..
T Consensus 105 kil~li~~W~~ 115 (220)
T 1dvp_A 105 KMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776654
No 169
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=21.90 E-value=3.5e+02 Score=25.70 Aligned_cols=104 Identities=11% Similarity=0.066 Sum_probs=60.1
Q ss_pred ccchhHHHHHHHHHHHHHhhc---CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhccCCccchHHHHhcCCH
Q 008781 175 SRAVNSVIRRAADAITNLAHE---NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (554)
Q Consensus 175 ~~~~~~~~~~a~~~L~~L~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 251 (554)
.++.|.=...+-..+..+... ++.......+...+..|+.++.++|+.-|.....+|..+-..-...+..+ ...+-
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~I-rk~i~ 217 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYI-RKQIN 217 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 345666666666666666542 12222333445667889999999999999888888877754333333333 33234
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHHhcc
Q 008781 252 PTLILMLRSE-DSAIHYEAVGVIGNLVHS 279 (554)
Q Consensus 252 ~~L~~ll~~~-~~~v~~~a~~~L~~L~~~ 279 (554)
..+.+..... ...-....+.+++.+..+
T Consensus 218 nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 218 NIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp HHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 4555555432 222334566666666554
No 170
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.63 E-value=1.4e+02 Score=24.14 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=52.0
Q ss_pred CHHHHHHHhc-cCChHHHHHHHHHHHHHhcCC-cccHHHHHHcCCHHH-HHHHhCC---CCHHHHHHHHHHHHHHhc
Q 008781 292 ALQPVIGLLS-SCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRP-LIEMLQS---PDVQLREMSAFALGRLAQ 362 (554)
Q Consensus 292 ~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~~~~-L~~~l~~---~~~~v~~~a~~~L~~L~~ 362 (554)
++..|..-+. +.++.++..|+.+|-.+.... ......+....++.. |+.++.. +...|+..++..+...+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4566777776 477888888888888777543 455556667778887 7888742 346899999988888875
No 171
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.61 E-value=3.2e+02 Score=21.70 Aligned_cols=92 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHhccCCccchHHHHhcCCHHHHH
Q 008781 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255 (554)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 255 (554)
...-+.-+...+. ....+..+.+.|++..+-..|.. ++..++...+.+|.++ +-.++.+.++|+-..++
T Consensus 37 KlklL~~V~~~l~-k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~ 111 (145)
T 2xpp_A 37 KIENVEEISDILM-SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVY 111 (145)
T ss_dssp HHHHHHHHHHHHT-CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHH
T ss_pred HHhhHHHHHHHHh-hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchh
Q ss_pred Hhhc--CCCHHHHHHHHHHHHHHhc
Q 008781 256 LMLR--SEDSAIHYEAVGVIGNLVH 278 (554)
Q Consensus 256 ~ll~--~~~~~v~~~a~~~L~~L~~ 278 (554)
.+-+ .+.++.+..|-..+...+.
T Consensus 112 ~l~k~~~et~~nk~la~~Li~~WsR 136 (145)
T 2xpp_A 112 FYSINPKESKEVRASAKALVQKWTN 136 (145)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred hhhcCCccCHHHHHHHHHHHHHHHH
No 172
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=20.14 E-value=5.5e+02 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=16.3
Q ss_pred hHHHHHhcCChHHHHHhhcCC
Q 008781 199 IKTRVRMEGGIPPLVELLEFT 219 (554)
Q Consensus 199 ~~~~~~~~~~i~~L~~ll~~~ 219 (554)
-+..+.+.|++..++.+|..+
T Consensus 283 RQkLlrEq~il~ll~~iL~~~ 303 (381)
T 1n4k_A 283 RQKLMREQNILKQIFKLLQAP 303 (381)
T ss_dssp HHHHHHHTTHHHHHHHHHHGG
T ss_pred HHHHHHhhChHHHHHHHHHhh
Confidence 455678889999999998654
Done!