BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008783
         (553 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 159/382 (41%), Gaps = 25/382 (6%)

Query: 106 GLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEI 165
           GL M + P+  Q  GA +   +   + + ++L L  S+PI  +    + I+ +   ++ +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 166 SSVAQTF---ILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVV 222
           ++    +   ++FA+P      L   LR +     +T P      I +LL++PLN++  V
Sbjct: 126 ATKTVGYMHAVIFAVPAYL---LFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF-V 181

Query: 223 HFKMGI-------AGVAIAMVWTXXXXXXXXXXXVYFSGVHKDSWVSPSMDCVRGWSSLL 275
           + K G         GVA A+V+                  H   + +      +    L 
Sbjct: 182 YGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLF 241

Query: 276 ALAIPNCISVCLEWWWYELMIMICGLLINP--KAAIASMGILIQITSLIYVFPSSLSLGV 333
            L  P   ++  E      +  +  LL+ P     +A+  + +  +SL+++FP S+   V
Sbjct: 242 RLGFPVAAALFFE----VTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAV 297

Query: 334 STRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTA 393
           S RVG++LG      A I+  V L   +A   +  L T L R +    +T +  ++ L  
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357

Query: 394 IALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFV-----A 448
             L    + +  +  Q    G LRG             S++++G+P   ++G        
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417

Query: 449 KMGFPGLWLGLLAAQASCALVM 470
            +G  G WLG +   ++ AL++
Sbjct: 418 PLGAKGFWLGFIIGLSAAALML 439


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 156/389 (40%), Gaps = 23/389 (5%)

Query: 96  ANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLL-LLSTSLPISFMWLNMKR 154
           A  T Y    G+   + P+  Q YGA +    G T ++ +   L+     +  MW  +  
Sbjct: 58  AFATVYITFMGIMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITP 117

Query: 155 ILLWCGQDDEISSVAQTFILF---AIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVL 211
              W    D +      ++LF   A+P       LH     L    + + +++ + +   
Sbjct: 118 FRNWLTLSDYVEGTMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFV--- 174

Query: 212 LHVPLNFLLVVHFKMGIAGVAIAMVWTXXXXXXXXXXXVYFSGVHKDSWVSPSMDCVR-- 269
           L+VPLN++ V + K G+  +  A                 +  + K+ +  P     +  
Sbjct: 175 LNVPLNYIFV-YGKFGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAKFG 233

Query: 270 --GWS---SLLALAIPNCISVCLEWWWYELMIMICGLLINP--KAAIASMGILIQITSLI 322
              W+    +  +  P  +S  LE   +  ++     LI P  +  +A+  + I ++ ++
Sbjct: 234 KPDWAVFKQIWKIGAPIGLSYFLEASAFSFIV----FLIAPFGEDYVAAQQVGISLSGIL 289

Query: 323 YVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFF 382
           Y+ P S+    + R+G  LG    S+AR    VSL     L ++ VL   L R      +
Sbjct: 290 YMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMY 349

Query: 383 TNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAI 442
            +D  +L + +  L   GL +  +  Q      LRG    K    I+  +F+  G+    
Sbjct: 350 NDDPAVLSIASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGY 409

Query: 443 LMGFVAKMGFPGLWLGLLAAQ--ASCALV 469
           L+ +   MG  G W  L+A+   A+ ALV
Sbjct: 410 LLAYRFDMGIYGFWTALIASLTIAAVALV 438


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,672,245
Number of Sequences: 62578
Number of extensions: 484421
Number of successful extensions: 1134
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 3
length of query: 553
length of database: 14,973,337
effective HSP length: 104
effective length of query: 449
effective length of database: 8,465,225
effective search space: 3800886025
effective search space used: 3800886025
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)