Query 008783
Match_columns 553
No_of_seqs 306 out of 1881
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 16:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.1E-56 2.3E-61 461.9 55.7 437 46-486 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 2E-52 4.4E-57 434.3 54.4 434 47-483 25-468 (478)
3 PRK00187 multidrug efflux prot 100.0 1.9E-51 4.1E-56 427.1 56.4 428 46-476 5-443 (464)
4 PRK01766 multidrug efflux prot 100.0 4.2E-49 9.1E-54 410.9 56.6 436 43-481 4-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 3.6E-49 7.8E-54 409.5 54.4 427 47-480 8-438 (453)
6 PRK10367 DNA-damage-inducible 100.0 7.4E-49 1.6E-53 403.9 53.9 423 47-481 5-434 (441)
7 KOG1347 Uncharacterized membra 100.0 5.4E-43 1.2E-47 356.9 33.1 448 46-495 23-470 (473)
8 TIGR01695 mviN integral membra 100.0 4.8E-35 1.1E-39 309.7 52.2 413 53-477 2-428 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 3.5E-35 7.6E-40 309.8 49.3 414 54-476 2-433 (488)
10 TIGR00797 matE putative efflux 100.0 1.6E-35 3.5E-40 297.6 43.8 338 59-399 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 4.1E-33 9E-38 287.1 46.2 405 53-476 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.5E-26 3.2E-31 238.8 51.0 385 81-477 5-403 (451)
13 PRK10459 colanic acid exporter 100.0 4.3E-26 9.3E-31 240.5 46.9 398 50-476 4-404 (492)
14 COG0728 MviN Uncharacterized m 100.0 1E-24 2.3E-29 220.8 52.1 419 51-477 7-437 (518)
15 COG2244 RfbX Membrane protein 99.9 8.3E-24 1.8E-28 222.5 43.2 391 48-460 3-395 (480)
16 COG0534 NorM Na+-driven multid 99.9 1.5E-20 3.3E-25 193.9 27.8 210 267-479 12-223 (455)
17 PRK10367 DNA-damage-inducible 99.9 2.1E-20 4.5E-25 192.9 27.3 207 268-476 5-211 (441)
18 PRK10189 MATE family multidrug 99.9 3.4E-20 7.4E-25 193.1 27.6 205 268-475 25-235 (478)
19 PRK00187 multidrug efflux prot 99.9 3.6E-20 7.9E-25 192.8 27.2 207 266-476 4-214 (464)
20 PRK09575 vmrA multidrug efflux 99.9 6E-20 1.3E-24 190.9 25.9 208 267-476 7-214 (453)
21 PRK01766 multidrug efflux prot 99.8 4.7E-19 1E-23 185.0 28.4 211 265-478 5-219 (456)
22 TIGR01695 mviN integral membra 99.8 5.9E-17 1.3E-21 171.6 33.5 232 46-287 218-454 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 1.3E-15 2.8E-20 147.7 33.6 271 53-340 1-272 (273)
24 TIGR00797 matE putative efflux 99.8 3.6E-16 7.9E-21 157.0 26.0 194 280-476 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.7 4.8E-15 1E-19 153.3 32.2 208 46-255 193-405 (451)
26 PF01554 MatE: MatE; InterPro 99.7 4.2E-18 9.1E-23 151.5 7.1 162 280-443 1-162 (162)
27 PF01554 MatE: MatE; InterPro 99.7 1.4E-17 3.1E-22 148.0 6.6 160 59-219 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.7 7.6E-15 1.6E-19 155.0 25.8 202 46-252 220-433 (488)
29 COG0728 MviN Uncharacterized m 99.7 2.8E-13 6.1E-18 138.0 35.7 240 41-289 222-466 (518)
30 PRK10459 colanic acid exporter 99.7 2.9E-13 6.2E-18 143.0 34.1 200 47-252 203-404 (492)
31 PRK15099 O-antigen translocase 99.6 1.8E-13 3.9E-18 141.2 26.3 199 46-251 210-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 2.6E-12 5.7E-17 122.9 31.9 248 69-340 2-251 (251)
33 COG2244 RfbX Membrane protein 99.6 2E-12 4.4E-17 136.2 27.7 187 46-238 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 2.1E-09 4.5E-14 112.2 32.5 421 54-476 4-469 (549)
35 KOG1347 Uncharacterized membra 99.2 2.3E-09 4.9E-14 110.4 20.5 205 268-476 24-229 (473)
36 KOG2864 Nuclear division RFT1 99.2 5.5E-07 1.2E-11 88.0 35.0 416 49-476 6-448 (530)
37 PF07260 ANKH: Progressive ank 98.9 1.1E-05 2.5E-10 75.7 30.4 261 48-317 8-284 (345)
38 PF14667 Polysacc_synt_C: Poly 98.4 3.1E-05 6.7E-10 67.1 18.5 80 173-254 2-81 (146)
39 PF04506 Rft-1: Rft protein; 98.3 0.00017 3.7E-09 75.8 23.9 203 50-253 252-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.2 0.0005 1.1E-08 66.2 21.7 187 276-476 3-190 (273)
41 PF13440 Polysacc_synt_3: Poly 97.9 0.0032 7E-08 59.8 21.6 164 295-475 7-171 (251)
42 PF14667 Polysacc_synt_C: Poly 97.9 8.9E-05 1.9E-09 64.2 9.3 79 396-477 2-80 (146)
43 KOG2864 Nuclear division RFT1 97.8 0.0019 4.1E-08 63.9 18.5 201 51-253 239-449 (530)
44 COG4267 Predicted membrane pro 97.8 0.039 8.4E-07 53.5 32.2 319 99-445 72-413 (467)
45 PF07260 ANKH: Progressive ank 97.8 0.0093 2E-07 56.6 21.7 160 267-432 6-168 (345)
46 PF12794 MscS_TM: Mechanosensi 93.5 8.9 0.00019 38.2 22.3 28 347-374 119-146 (340)
47 COG4267 Predicted membrane pro 87.0 34 0.00074 34.0 19.9 136 324-476 75-210 (467)
48 PF03547 Mem_trans: Membrane t 72.6 19 0.00042 36.5 9.0 17 358-374 35-51 (385)
49 PF05977 MFS_3: Transmembrane 71.5 1.5E+02 0.0032 31.7 38.2 46 54-99 13-60 (524)
50 PLN00028 nitrate transmembrane 71.1 1.4E+02 0.003 31.3 35.0 15 329-343 303-317 (476)
51 PRK10929 putative mechanosensi 69.4 2.3E+02 0.005 33.2 20.5 302 220-531 455-779 (1109)
52 PF05684 DUF819: Protein of un 67.1 1.2E+02 0.0027 30.6 13.0 23 453-475 144-166 (378)
53 PRK09556 uhpT sugar phosphate 60.2 2.2E+02 0.0047 29.6 34.5 18 326-343 306-323 (467)
54 PF04505 Dispanin: Interferon- 58.4 50 0.0011 25.1 6.4 38 329-366 36-73 (82)
55 PRK06814 acylglycerophosphoeth 56.3 4.1E+02 0.0088 31.5 41.0 29 186-214 130-158 (1140)
56 PRK08156 type III secretion sy 48.7 3E+02 0.0064 27.7 16.5 23 473-495 198-220 (361)
57 PRK11281 hypothetical protein; 48.1 5.3E+02 0.011 30.4 19.5 270 232-529 496-780 (1113)
58 PRK01637 hypothetical protein; 47.5 2.7E+02 0.0058 26.9 19.2 7 338-344 117-123 (286)
59 PF13347 MFS_2: MFS/sugar tran 44.8 3.6E+02 0.0078 27.5 20.4 392 51-481 1-428 (428)
60 COG0798 ACR3 Arsenite efflux p 43.5 3.4E+02 0.0073 26.8 15.1 195 60-265 146-341 (342)
61 PF00558 Vpu: Vpu protein; In 41.7 43 0.00092 25.2 3.6 19 474-492 30-48 (81)
62 PF10160 Tmemb_40: Predicted m 41.7 3.1E+02 0.0067 25.9 11.8 84 344-430 109-192 (261)
63 PF06963 FPN1: Ferroportin1 (F 41.5 4.2E+02 0.0091 27.4 18.0 50 307-366 38-87 (432)
64 PF07074 TRAP-gamma: Transloco 38.9 2E+02 0.0044 25.1 7.7 48 435-482 27-74 (170)
65 PF03904 DUF334: Domain of unk 38.4 2.1E+02 0.0044 26.4 8.0 40 122-161 141-180 (230)
66 TIGR00328 flhB flagellar biosy 37.1 4.4E+02 0.0095 26.3 17.2 22 474-495 204-225 (347)
67 PF05975 EcsB: Bacterial ABC t 35.8 4.8E+02 0.01 26.4 16.9 135 344-491 88-227 (386)
68 PRK15403 multidrug efflux syst 35.7 4.9E+02 0.011 26.5 40.7 16 107-122 66-81 (413)
69 TIGR00822 EII-Sor PTS system, 34.1 4.2E+02 0.0092 25.3 18.3 173 306-519 93-265 (265)
70 PF05313 Pox_P21: Poxvirus P21 33.9 2.5E+02 0.0053 24.8 7.4 26 227-252 135-160 (189)
71 TIGR00879 SP MFS transporter, 33.8 5.2E+02 0.011 26.2 26.4 20 450-469 446-465 (481)
72 PRK03612 spermidine synthase; 32.6 6.4E+02 0.014 26.9 23.6 44 201-246 150-193 (521)
73 PF14184 YrvL: Regulatory prot 31.8 3.1E+02 0.0067 23.0 13.1 110 132-243 5-115 (132)
74 PF03547 Mem_trans: Membrane t 31.4 5.5E+02 0.012 25.8 13.7 10 451-460 119-128 (385)
75 PF08229 SHR3_chaperone: ER me 31.1 4E+02 0.0087 24.1 10.0 33 363-395 16-50 (196)
76 TIGR01404 FlhB_rel_III type II 30.2 5.6E+02 0.012 25.5 16.9 22 474-495 203-224 (342)
77 PRK05702 flhB flagellar biosyn 29.8 5.9E+02 0.013 25.6 16.9 22 474-495 211-232 (359)
78 PRK03612 spermidine synthase; 29.4 7.2E+02 0.016 26.5 22.2 45 429-475 154-198 (521)
79 PRK09108 type III secretion sy 27.9 6.3E+02 0.014 25.3 17.0 22 474-495 206-227 (353)
80 PRK12721 secretion system appa 27.4 6.4E+02 0.014 25.2 16.7 22 474-495 204-225 (349)
81 KOG2533 Permease of the major 26.9 7.8E+02 0.017 26.0 31.5 64 184-247 154-221 (495)
82 PF10337 DUF2422: Protein of u 26.8 7.4E+02 0.016 25.8 13.3 26 46-71 12-37 (459)
83 PRK06298 type III secretion sy 26.7 6.6E+02 0.014 25.2 17.0 22 474-495 205-226 (356)
84 PRK15111 antimicrobial peptide 25.8 6.2E+02 0.013 24.5 11.0 21 271-291 201-221 (296)
85 KOG2234 Predicted UDP-galactos 25.6 6.7E+02 0.015 24.9 19.5 28 261-288 79-106 (345)
86 TIGR00383 corA magnesium Mg(2+ 23.6 2.3E+02 0.0051 27.7 6.7 54 423-479 256-317 (318)
87 PRK09546 zntB zinc transporter 23.2 2.1E+02 0.0046 28.2 6.3 50 427-479 266-323 (324)
88 PRK12468 flhB flagellar biosyn 22.7 8.2E+02 0.018 24.9 17.2 23 473-495 210-232 (386)
89 KOG0847 Transcription factor, 21.7 62 0.0014 29.1 1.9 35 450-484 193-227 (288)
90 PRK13109 flhB flagellar biosyn 21.4 8.4E+02 0.018 24.5 17.2 22 474-495 213-234 (358)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.1e-56 Score=461.91 Aligned_cols=437 Identities=26% Similarity=0.337 Sum_probs=415.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK 125 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 125 (553)
.+++.|+++++++|++++++++.+++++|++++||+|++++++.+++.++..++ ..+..|+++|..+++||++|++|++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 566899999999999999999999999999999999999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 008783 126 LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTY 204 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (553)
++++..++++.+.+++++++.++ +.+.++++.+++.++++.+.+.+|+++..++.|+..++..+.+++|+.|+++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999877766 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-cC-CchhHHHHHHHHHHHHHHHHHHHHHHhcccc-cccCCCCchhhHHhHHHHHHHHhhH
Q 008783 205 CSAISVLLHVPLNFLLVVH-FK-MGIAGVAIAMVWTNLNLFLLLSSFVYFSGVH-KDSWVSPSMDCVRGWSSLLALAIPN 281 (553)
Q Consensus 205 ~~i~~~~~~i~l~~~li~~-~~-~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~p~ 281 (553)
.++++.++|+++|++|+++ ++ +|+.|+++||++++.+..++.+++++++++. .....+..+++++.+|+++++|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 67 9999999999999999999999999887752 2222233367789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHH
Q 008783 282 CISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAV 361 (553)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~ 361 (553)
++++..+...+.+.+.+++++++ +.+|+|+++.++.++.++++.|++++.++++++++|+||++++++..+.++.+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999976 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHH
Q 008783 362 ALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVA 441 (553)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 441 (553)
++++..+++++++++++.++|++|+++.+.+..++++..+..++++++.+..+++||.||++.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 008783 442 ILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERA 486 (553)
Q Consensus 442 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (553)
+++.++. +|..|+|+++..++.+..++...+++|.+|++...+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9998876 8999999999999999999999999999998766544
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2e-52 Score=434.31 Aligned_cols=434 Identities=13% Similarity=0.163 Sum_probs=401.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhH
Q 008783 47 LEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKL 126 (553)
Q Consensus 47 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 126 (553)
.+..|+++++++|.++++++..+.+++|+.+++++|++++++++++.++..+. ..+..|++++..++++|++|++|+++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35689999999999999999999999999999999999999999999998877 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 008783 127 LGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCG--QDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLT 203 (553)
Q Consensus 127 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (553)
+++.++.++.+.++++++++++ +.+.++++.++. .|+++.+.+..|+++..++.++..+...+.+++|+.|+++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999999988776 778889999984 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----CCchhHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCC-CchhhHHhHHHHHH
Q 008783 204 YCSAISVLLHVPLNFLLVVHF----KMGIAGVAIAMVWTNLNLFLLLSSFVYFSGV--HKDSWVS-PSMDCVRGWSSLLA 276 (553)
Q Consensus 204 ~~~i~~~~~~i~l~~~li~~~----~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~ll~ 276 (553)
+.+++..++|++++++|++.+ ++|+.|+++|+.+++.+..++..++++++++ .+..+++ +.+.+++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999753 7899999999999999998887666654322 2222222 22346789999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHH
Q 008783 277 LAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVS 356 (553)
Q Consensus 277 ~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~ 356 (553)
+|+|.+++.........+.+.+++.+++ +++|+|+++.++.++.+++..|++++..+++++++|+||++++|+..+.+
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~ 341 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHV 341 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999998888888888899865 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHh
Q 008783 357 LFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLV 436 (553)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 436 (553)
.++++++++.++++++++++++..+|++|+++.+.+..++++.++..++++++.+..+.+||.||++.++++++.+.|++
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v 421 (478)
T PRK10189 342 FWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGC 421 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 008783 437 GMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQA 483 (553)
Q Consensus 437 ~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (553)
.+|+.+++.+..++|..|+|++..+++.+..++.+.++++.+|++..
T Consensus 422 ~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~ 468 (478)
T PRK10189 422 RVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKY 468 (478)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCC
Confidence 99999999888789999999999999999999999999999998733
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.9e-51 Score=427.07 Aligned_cols=428 Identities=24% Similarity=0.299 Sum_probs=394.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK 125 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 125 (553)
++++.|+++++++|.+++++++.+.+++|+.+++|+|++++++++++.++.+++ ..+..|+++|..++++|++|++|++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChh
Confidence 456899999999999999999999999999999999999999999999999887 7889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 008783 126 LLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYC 205 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (553)
++++.++.++.+.++++++..++..+.+|++.+++.|+|+.+.+.+|+++..++.++..+....++++|+.|+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999888777557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc----CCchhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccc-CCCCchhhHHhHHHHHHHHh
Q 008783 206 SAISVLLHVPLNFLLVVHF----KMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVH-KDS-WVSPSMDCVRGWSSLLALAI 279 (553)
Q Consensus 206 ~i~~~~~~i~l~~~li~~~----~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ll~~~~ 279 (553)
++++.++|+++|++|++++ ++|+.|+++|+.+++.+..+...+|++++++. +.+ ++++.+.+++.+|+++++|+
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999863 48999999999999998887777777654432 111 12222456788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 008783 280 PNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFC 359 (553)
Q Consensus 280 p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~ 359 (553)
|.+++++++.....+++.+++++++ +++|+++++.++..+.+++..+++++..++++|++|+||++++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G~--~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALGS--TQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999976 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCC--cH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 008783 360 AVALGLMAVLFTTLMRHKWGRFFTN--DA---EILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFY 434 (553)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~~--d~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 434 (553)
+++++++.+++++++++++.++|++ |+ ++.+.+..++++.+++.++++++.+..+++||.||++.+++.++++.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999964 44 688899999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 435 LVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 435 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
++++|+.+++.+.+++|+.|+|+++.+++.+..++....+++
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888999999999999999998877666644
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4.2e-49 Score=410.94 Aligned_cols=436 Identities=20% Similarity=0.347 Sum_probs=401.3
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccC
Q 008783 43 PSEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAK 122 (553)
Q Consensus 43 ~~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~ 122 (553)
.+..++.+|+++++++|.+++++...+...+|+.+++++|++++++++.+.++..+. ..+..|++.+..+.+||++|++
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 344577899999999999999999999999999999999999999999999887766 7888999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchH
Q 008783 123 QWKLLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLP 201 (553)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (553)
|+++.++.++.++.+.+++++++.++ +.+.++++.+++.|+++.+.+..|+++..++.++..+...+++++++.|+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999888776 77778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----cCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc--ccCCCCchhhHHhHHHHH
Q 008783 202 LTYCSAISVLLHVPLNFLLVVH----FKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHK--DSWVSPSMDCVRGWSSLL 275 (553)
Q Consensus 202 ~~~~~i~~~~~~i~l~~~li~~----~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll 275 (553)
+++.++++.++|++++++|++. .++|+.|+++++.+++++..++..++++++++.+ +.+.++.+++++.+|+++
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 242 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL 242 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence 9999999999999999999864 2579999999999999999998888776554321 122233345678899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHH
Q 008783 276 ALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIV 355 (553)
Q Consensus 276 ~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~ 355 (553)
++++|..++...+...+.++..+++++++ +++|+++++.++.++.++++.+++.+..+.+++++|+||++++++..+.
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~ 320 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLGT--VTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYI 320 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999975 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 008783 356 SLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYL 435 (553)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 435 (553)
++++++.++++.+++++.+++++.++|++|+++.+.+..++++..+..++++++.+..+++||.||++.++++++++.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~ 400 (456)
T PRK01766 321 GLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWV 400 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 008783 436 VGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMV 481 (553)
Q Consensus 436 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 481 (553)
+.+|..+++.+.+++|..|+|+++.+++.+.+++.++++++.+|+.
T Consensus 401 ~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 401 LGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999888888766553
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.6e-49 Score=409.47 Aligned_cols=427 Identities=17% Similarity=0.201 Sum_probs=390.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783 47 LEEMKAIGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK 125 (553)
Q Consensus 47 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 125 (553)
++..|+++++++|.+++++++.+++++|+.+++| +|++++++++++.++.++. ..+..+++.+..++++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4578999999999999999999999999999999 6999999999999999887 7888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 008783 126 LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTY 204 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (553)
++++.+++++.+.+++++++.++ +.+.++++.+++.++++.+.+.+|+++..++.++..+......++|+.|+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988776 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccc-cccCCCCchhhHHhHHHHHHHHhhHHH
Q 008783 205 CSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVH-KDSWVSPSMDCVRGWSSLLALAIPNCI 283 (553)
Q Consensus 205 ~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~p~~~ 283 (553)
.++++.++|++++++|++.+++|+.|+++|+.+++.+..++.++++++++.. +.+.+.+ +.+++.+|+++++|+|.++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHH
Confidence 9999999999999999998889999999999999999999887777654433 2221222 4567889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHH
Q 008783 284 SVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVAL 363 (553)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~ 363 (553)
+...+.+...+.+.+++.+++ .+++|+++++.++..+.+++..|++++..|.+|+++|+||++++++..+.++++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999998888888888873 4689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhccCC-cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHH
Q 008783 364 GLMAVLFTTLMRHKWGRFFTN-DAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAI 442 (553)
Q Consensus 364 ~~~~~~~~~~~~~~i~~l~~~-d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~ 442 (553)
+++.+++++++++++..+|++ |+++.+.+..++++..++.++++++.+..+++||.||++.++..++... ++++|..+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHH
Confidence 999999999999999999995 7899999999999999999999999999999999999999999998764 67899999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhccHH
Q 008783 443 LMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWM 480 (553)
Q Consensus 443 ~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 480 (553)
++... +|+.|+|+++.+++.+..++...++++ +|+
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 98654 799999999999999988877766654 444
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=7.4e-49 Score=403.91 Aligned_cols=423 Identities=18% Similarity=0.165 Sum_probs=374.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783 47 LEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYL-GELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK 125 (553)
Q Consensus 47 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 125 (553)
.++.|+++++++|.+++++++.+++++|+.++||+ |++++++++++.++.++. ..+..+++.+..+++||++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999997 677999999999999887 7889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 008783 126 LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTY 204 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (553)
++++.+++++.+.+++++++.++ ..+.++++.+++.|+++.+.+.+|+++..++.++..+..++++++|+.|+++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988766 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCCchhh-HHhHHHHHHHHhhHH
Q 008783 205 CSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHK-DSWVSPSMDC-VRGWSSLLALAIPNC 282 (553)
Q Consensus 205 ~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ll~~~~p~~ 282 (553)
.++++.++|++++++|++.+++|+.|+++|+.+++.+..++..++++++++.+ .+++.+ +.+ ++.+|+++++|.|.+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHH
Confidence 99999999999999999988999999999999999999888877776543221 111111 222 347899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHH
Q 008783 283 ISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVA 362 (553)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~ 362 (553)
++...+...+.+.+.+++++++ +++|+|+++.++.++.++++.|++++.+++++|++|+||++++|+..+.+.+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~ 320 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGI 320 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCC---cchhHHHHHHHHHHhhHH
Q 008783 363 LGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSAR---PKTGASINLGSFYLVGMP 439 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~ 439 (553)
++++.+++++++++++..+|++|+|+.+.+..++++..+..+...+..+..++++|.+| ++.++.+++++.|+..++
T Consensus 321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~ 400 (441)
T PRK10367 321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLT 400 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764443345555555666665 999999999887642221
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 008783 440 VAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMV 481 (553)
Q Consensus 440 ~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 481 (553)
. +.+|..|+|++..+++.+..++...++++ +|++
T Consensus 401 ~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 401 L-------PWLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred H-------HHcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 1 23799999999999999999988876655 4854
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=5.4e-43 Score=356.86 Aligned_cols=448 Identities=40% Similarity=0.649 Sum_probs=431.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK 125 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 125 (553)
...+.|++++++.|.++..+.+.+.+++++.++||+|+.++++.+++.++.+.+...+..|+..+..++|+|++|.++++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 36789999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 008783 126 LLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYC 205 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (553)
..+.+.+++..+....+++...++.+.+|++..+++++++...+..|.++.++..+.+......+.++|++++..+..++
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHH
Q 008783 206 SAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISV 285 (553)
Q Consensus 206 ~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~ 285 (553)
..+..++|+.+++++++..++|..|++++..+++.+...+...|..... ....|.+++.. ++.+++++++++|.+++.
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mi 260 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMI 260 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchhee
Confidence 9999999999999999999999999999999999999999999987666 67778888666 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHH
Q 008783 286 CLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGL 365 (553)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (553)
+++++.+++..++.|.++++..++++.+++.++....++++.+++.++..++++.+|+++++++|.....+...++..+.
T Consensus 261 clE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~ 340 (473)
T KOG1347|consen 261 CLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGA 340 (473)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999977899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 008783 366 MAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMG 445 (553)
Q Consensus 366 ~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 445 (553)
..+..++...+.+..+|++|+++.+......++++.+.++++.+.+..+..+|.|+++...++++...+++++|+.+++.
T Consensus 341 ~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~ 420 (473)
T KOG1347|consen 341 SLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLG 420 (473)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhhh
Q 008783 446 FVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 446 ~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
+..++|..|+|.++..+..+..........++||+++.++.+++......
T Consensus 421 ~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~ 470 (473)
T KOG1347|consen 421 FFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLV 470 (473)
T ss_pred EEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhcc
Confidence 88899999999999999888888888888899999999999998876553
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=4.8e-35 Score=309.72 Aligned_cols=413 Identities=15% Similarity=0.102 Sum_probs=348.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhccCChhHHHH
Q 008783 53 IGKISGPTAMTGLILYSRAMISMLFLGY-LGELEL-AGGSLSIGFANITGYSVL-SGLAMGMEPICGQAYGAKQWKLLGI 129 (553)
Q Consensus 53 i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~-~~~~~a~~~~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~ 129 (553)
+.|.+.-..++++++.+++++|..+++| +|++++ ++++.+.++.+++..... .|++++..+.+.++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788899999999999999999999999 999999 899999999877633333 468888888777664332 57777
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 008783 130 TLQRTVLLLLSTSLP-ISFM-WLNMKRILLWC--GQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYC 205 (553)
Q Consensus 130 ~~~~~~~~~~~~~i~-~~~~-~~~~~~i~~~l--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (553)
.+.+.+....+++.. +.++ +.+.+++..++ +.+++..+.+..|++++.++.++..+....++++|+.+|++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777766666555443 3444 67777888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHH--HHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHH
Q 008783 206 SAISVLLHVPLNFLLVVHFKMGIAGVA--IAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCI 283 (553)
Q Consensus 206 ~i~~~~~~i~l~~~li~~~~~g~~Gaa--~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~ 283 (553)
+++..+++++..+++. .++|..|++ ++++++..+..++.+++.++++.. .+. ++ +.+++.+|+++++++|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFL-LKP-RF-NFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ccC-cC-CCCChhHHHHHHHHHHHHH
Confidence 9998888766443333 468999988 999999999988887766554321 111 11 2345788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHH
Q 008783 284 SVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYV-FPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVA 362 (553)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~-~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~ 362 (553)
++....+...++..+.+.++. +++++|+.+.++.++... +..+++++..|.+++++|+||+++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988666654 899999999999988765 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCC----cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhH
Q 008783 363 LGLMAVLFTTLMRHKWGRFFTN----DAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGM 438 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~~----d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 438 (553)
++++.+++++++++++..+|.+ |++..+.+..++++++++.++.+++.+..+.+++.||+|.+++.++... ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999876 5677888999999999999999999999999999999999999999876 6888
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008783 439 PVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRT 477 (553)
Q Consensus 439 ~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 477 (553)
++.+++... +|..|+|+++.+++.+..++..++++|+
T Consensus 392 ~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988888543 7999999999999999988887777664
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=3.5e-35 Score=309.75 Aligned_cols=414 Identities=14% Similarity=0.166 Sum_probs=350.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHHHHHH
Q 008783 54 GKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQ 132 (553)
Q Consensus 54 ~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~ 132 (553)
.|.+.|.+++++++.+.+++|+.+++| +|++++|+++.+.++..++......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 8999999999999998887444567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008783 133 RTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVL 211 (553)
Q Consensus 133 ~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 211 (553)
.++.+.+++++++.++ +.+.+++..+++++++. ..+++++.+..++..+....++++|+.+|.+..+..+++..+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888766 66677777766666543 346778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-----cCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc--ccCCCCchhhHHhHHHHHHHHhhHHHH
Q 008783 212 LHVPLNFLLVVH-----FKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHK--DSWVSPSMDCVRGWSSLLALAIPNCIS 284 (553)
Q Consensus 212 ~~i~l~~~li~~-----~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~p~~~~ 284 (553)
+++.++..++.. .+.++.|+++++.++..+..++..++.+++++.+ ..+.+..+.+++.+|+++++++|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776665542 2457888999999999999888766655443321 112222234567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCc-----hhh---HHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHH
Q 008783 285 VCLEWWWYELMIMICGLLIN-----PKA---AIASM-GILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIV 355 (553)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~-----g~~---~va~~-~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~ 355 (553)
++...+...+|++++++... +.+ .++.| +++.++..+...+..+++++..|.+++++|+||+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988876421 112 23333 4566777888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 008783 356 SLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYL 435 (553)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 435 (553)
++++..+++++.++.+.++++++..+|.++++ +..+++++++..++..++.+..+++++.||+|..++.++... +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 678899999999999999999999999999999999999987 7
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 436 VGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 436 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
+++++.+++...+.+|..|+|+++.+++.+..++.....+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888764467899999999999999999988888776
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.6e-35 Score=297.61 Aligned_cols=338 Identities=29% Similarity=0.444 Sum_probs=310.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 008783 59 PTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLL 138 (553)
Q Consensus 59 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 138 (553)
|.++++++..++..+|+.+++++|++++++++.+.++..+. ..+..|++++..+.+++++|++|+|+.++.++..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999988876 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 008783 139 LSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLN 217 (553)
Q Consensus 139 ~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~ 217 (553)
.+++++++++ +.+.+++..+++.+++..+.+..|++++.++.++.++..+..+++|+.||++..++.+++..+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998876 788889999988788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hcC-CchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008783 218 FLLVV-HFK-MGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELM 295 (553)
Q Consensus 218 ~~li~-~~~-~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~ 295 (553)
+++++ .++ +|+.|+++++.+++++..++..++.+++++.+..|+...+.+++.+|+++++|+|.+++++..++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 667 8899999999999999998887777654433333333234567889999999999999999999999999
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008783 296 IMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMR 375 (553)
Q Consensus 296 ~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (553)
+.+++.+++ +++++|+++.++.++...++.+++++..|.+++++|+||+++.++..++++++.++++++.++++.+++
T Consensus 240 ~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998865 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcHHHHHHHHHHHHHH
Q 008783 376 HKWGRFFTNDAEILELTAIALPII 399 (553)
Q Consensus 376 ~~i~~l~~~d~~~~~~~~~~l~i~ 399 (553)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988775
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4.1e-33 Score=287.14 Aligned_cols=405 Identities=11% Similarity=0.006 Sum_probs=341.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHHHHH
Q 008783 53 IGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITL 131 (553)
Q Consensus 53 i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 131 (553)
++|.+.....+.++..+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 99999999999999998875555889999999999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008783 132 QRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISV 210 (553)
Q Consensus 132 ~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 210 (553)
+.++.+.++.+++++++ +.+.+|+..+++.+++. . .++.+..+..++..+.....+.+|+.++++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY-Q---GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776 78889999888777652 2 3455666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHHHHHHH
Q 008783 211 LLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWW 290 (553)
Q Consensus 211 ~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~ 290 (553)
++|+.+ ++++... .|+.|+++|+++++.+..+..++++++++..+.++.++ +.+++.+|+++++|.|..+++...++
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444432 49999999999999999887776665544322111122 34678899999999999999999999
Q ss_pred HHHHHHHHHH-hcCchhhHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008783 291 WYELMIMICG-LLINPKAAIASMGILIQITSL-IYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAV 368 (553)
Q Consensus 291 ~~~~~~~l~~-~~~~g~~~va~~~i~~~i~~l-~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (553)
....++.+++ .++ ++++|.|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++...+.+.++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997 554 5999999999999874 5888999999999999995 6789999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHHhh
Q 008783 369 LFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVA 448 (553)
Q Consensus 369 ~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 448 (553)
+.++++++++..+|.+|+ ++.+.++++++.++.++...+......+...++++......+... ++.+++.+++..
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~-- 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIP-- 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--
Confidence 999999999999998865 566888999999999988888877777778888877777676644 788888888854
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 449 KMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 449 ~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
.+|..|+++++.+++.+..++......+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999887766654
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.97 E-value=1.5e-26 Score=238.77 Aligned_cols=385 Identities=18% Similarity=0.149 Sum_probs=333.8
Q ss_pred cChh-hHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 008783 81 LGEL-ELAGGSLSIGFANITGYSVL-SGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFM-WLNMKRILL 157 (553)
Q Consensus 81 lg~~-~~~~~~~a~~~~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~ 157 (553)
+|.. +..++.++..+.+++...+. .+++++..|..++.. ++++++.++..+..+.+..++++.++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665 55689999999998844454 468999999999998 8889999999999988888888888776 888889888
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCc---hhHHH
Q 008783 158 WC--GQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMG---IAGVA 232 (553)
Q Consensus 158 ~l--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---~~Gaa 232 (553)
.+ +.+++..+.+.++++++.+..++..+..++.+++|+++|+..+....++.++..+...+++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 87 5678888999999999999999999999999999999999999998888777766544444333 56 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-cccCCCCchhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 008783 233 IAMVWTNLNLFLLLSSFVYFSGVH-KDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIAS 311 (553)
Q Consensus 233 ~a~~is~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~ 311 (553)
++..++.++..++.+.+.++.+.+ +..+ ....+..|++++...|..+.....++...+++.+.+.+++ ..+++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~ 235 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKF----DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSA 235 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccC----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHH
Confidence 999999999998888877765543 2222 1224668999999999999999999999999999999876 88999
Q ss_pred HHHHHHHHHHHH-hhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC----CcH
Q 008783 312 MGILIQITSLIY-VFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFT----NDA 386 (553)
Q Consensus 312 ~~i~~~i~~l~~-~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~d~ 386 (553)
++.+.++.++.. .+..+++++..|..++...++|.++.++..+++++..+.+.+|++++++.+++++..++. -|.
T Consensus 236 l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~ 315 (451)
T PF03023_consen 236 LNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTA 315 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCH
Confidence 999999999977 456799999999999999999999999999999999999999999999999999999874 255
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 008783 387 EILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASC 466 (553)
Q Consensus 387 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~ 466 (553)
+-.+.....+.+++++.++.+++.++...+.+.+|+|.+++.++++. ++++.+.+++.. .+|..|+.+++.++..+.
T Consensus 316 ~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~--~~g~~Glala~sl~~~i~ 392 (451)
T PF03023_consen 316 EDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVP--FFGVAGLALATSLSAIIS 392 (451)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999987 788888877744 489999999999999999
Q ss_pred HHHHHHHHHhc
Q 008783 467 ALVMLHVLCRT 477 (553)
Q Consensus 467 ~~~~~~~~~~~ 477 (553)
+++.+..++|+
T Consensus 393 ~~~l~~~l~r~ 403 (451)
T PF03023_consen 393 ALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHH
Confidence 99988888775
No 13
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=4.3e-26 Score=240.48 Aligned_cols=398 Identities=11% Similarity=0.096 Sum_probs=318.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHH
Q 008783 50 MKAIGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLG 128 (553)
Q Consensus 50 ~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~ 128 (553)
.++..+.+.+..++++...+.+++...+++| +||+++|.++.+..+.+++......|++++.. |.. +++ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~~-~~~----~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QRQ-DIS----H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hcc-cCC----H
Confidence 4678899999999999999999999999999 99999999999999999885666778877653 221 112 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 008783 129 ITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSA 207 (553)
Q Consensus 129 ~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 207 (553)
+.....+.+.++.++++.++ +.+.+++..++ ++++. ...+++..+..++..+.......++..++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455566666677666655 44455554444 44442 34567777777888888889999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHHHH
Q 008783 208 ISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCL 287 (553)
Q Consensus 208 ~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~ 287 (553)
+..++..++...+.. .+.|+.+.+++++++..+..++.....+ ++ .++.+ +.+++..|++++++.|...+++.
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~~-~~~~~----~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-KI-YRPAL----HFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-cc-CCccc----eecHHHHHHHHhhhHHHHHHHHH
Confidence 888887777666655 4689999999999999887765533222 22 12111 22356789999999999999999
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 008783 288 EWWWYELMIMICGLLINPKAAIASMGILIQITSLIYV-FPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLM 366 (553)
Q Consensus 288 ~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~-~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (553)
..+...+|+++++.+. |++++|.|+.+.++.++... +...+++...|..++. ++|.++.++..++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 57999999999999887554 4456788899999885 578899999999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHH
Q 008783 367 AVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGF 446 (553)
Q Consensus 367 ~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 446 (553)
+++++.++++++..++.+++ +..+...++++++..++..+......++++.||+|..++.+++.. ++.+|..+.+..
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~ 376 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQ 376 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHh
Confidence 99999999999999887755 778899999999999999999999999999999999999998876 567776666543
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 447 VAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 447 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
.+|..|+++++.+++.+..++..+...|
T Consensus 377 --~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 377 --LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred --hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999988888877734
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.96 E-value=1e-24 Score=220.76 Aligned_cols=419 Identities=15% Similarity=0.101 Sum_probs=351.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChh-hHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhhhccCChhHH
Q 008783 51 KAIGKISGPTAMTGLILYSRAMISMLFLGY-LGEL-ELAGGSLSIGFANITGYSVLSG-LAMGMEPICGQAYGAKQWKLL 127 (553)
Q Consensus 51 k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~-~~~~~~~a~~~~~~~~~~~~~g-l~~~~~~~is~~~g~~~~~~~ 127 (553)
.+++|.++-.....+++.+.+++...+++. +|.. ...++.++..+.|++--.+..| ++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 456777777888888889999999999999 9995 6789999999999986565554 799999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 008783 128 GITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQ---DDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLT 203 (553)
Q Consensus 128 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (553)
++..+........+.+.++++ .+++++++..+.. |++....+....+++.|.+++..+.....++|++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777777775666666666666 5666666634422 233333678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHH
Q 008783 204 YCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCI 283 (553)
Q Consensus 204 ~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~ 283 (553)
+..+..++.-+.....+.........+.+++..++-+.+.++.+..++|.+-..+....+ +.+.+|++++...|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHHHH
Confidence 998888877775665555543223678899999999999999988888766432221111 23789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHH
Q 008783 284 SVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIY-VFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVA 362 (553)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~-~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~ 362 (553)
.....++...+++.+.+.+.+ ..++.+..+++++++.. .+..++++...|..|++..++|.++.++..+.+++++++
T Consensus 244 ~~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999976 88999999999999977 677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCC----cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhH
Q 008783 363 LGLMAVLFTTLMRHKWGRFFTN----DAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGM 438 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~~----d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 438 (553)
+.+|.++++..+++++..++.. +++........+..+.++.++..+..++...+++.+|+|.|+++++++. ++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHH
Confidence 9999999999999999998732 3455677899999999999999999999999999999999999999987 7888
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008783 439 PVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRT 477 (553)
Q Consensus 439 ~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 477 (553)
.+++.+ .+.+|..|++++..++..+++.+.++..+|+
T Consensus 401 ~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 401 LLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888666 4448999999999999888888888777764
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=8.3e-24 Score=222.55 Aligned_cols=391 Identities=16% Similarity=0.141 Sum_probs=309.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhH
Q 008783 48 EEMKAIGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKL 126 (553)
Q Consensus 48 ~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 126 (553)
+..+++.|.+.....+++.+.+.+++...+++| +|++++|.++.+.++.+++......|+..+..+.++++..++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 356788999999999999999999999999999 9999999999999999999666679999999999999876655555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 008783 127 LGIT-LQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYC 205 (553)
Q Consensus 127 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (553)
.... ....+...+..+++.........+. ++ .....+.+..+..++.......++++|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5554 4444444444443333332222222 12 22334667888888999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHH
Q 008783 206 SAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISV 285 (553)
Q Consensus 206 ~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~ 285 (553)
.+.. ..-+...+.+.. ....+..++..++..........+.+++++.... ..+ +..++.+|+++++++|.....
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-PIL-RFSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-ccc-CchhHHHHHHHHHhhHHHHHH
Confidence 4444 111111222221 3445556666666666665555555422221111 111 224789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHH
Q 008783 286 CLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGL 365 (553)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (553)
....+....|+++++++. |++++|.|+.+.++......+..+++.+..|..++...+++.++.++..+++.++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 008783 366 MAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMG 445 (553)
Q Consensus 366 ~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 445 (553)
|..+++.++++++..++.+++ +..+...++++++..++..+.......+++.|+++..++.+.++. +.++.+.+++
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l- 381 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL- 381 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH-
Confidence 999999999999999987765 445899999999999999999999999999999999999999987 6777777777
Q ss_pred HhhcCChhHHHHHHH
Q 008783 446 FVAKMGFPGLWLGLL 460 (553)
Q Consensus 446 ~~~~~g~~G~~~a~~ 460 (553)
.+.+|..|+..++.
T Consensus 382 -i~~~g~~g~~~a~~ 395 (480)
T COG2244 382 -IPRFGLIGAAIATA 395 (480)
T ss_pred -HHhhhhhhHHHHHH
Confidence 44478999999883
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=1.5e-20 Score=193.92 Aligned_cols=210 Identities=28% Similarity=0.266 Sum_probs=201.1
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCCh
Q 008783 267 CVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRP 346 (553)
Q Consensus 267 ~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~ 346 (553)
.++..|+++++++|.++.++.......+|+.++|++++ +++|+-+++.++..+.+.+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~--~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGA--EALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 45689999999999999999999999999999999975 9999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhH
Q 008783 347 SKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGA 426 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (553)
+++++....++.++++++++..++.+.+++++..+++.++++.+.+..|+++..++.++..+.....+++|+.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHh-hc-CChhHHHHHHHHHHHHHHHHHHHHHHhccH
Q 008783 427 SINLGSFYLVGMPVAILMGFV-AK-MGFPGLWLGLLAAQASCALVMLHVLCRTDW 479 (553)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 479 (553)
++++++. +.|+.+.+++.+. .+ +|+.|+++|+.+++.+.+++...++.|++.
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999988 8999999999887 46 999999999999999999999988887653
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.88 E-value=2.1e-20 Score=192.86 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=194.0
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChh
Q 008783 268 VRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPS 347 (553)
Q Consensus 268 ~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~ 347 (553)
++..|+++++++|.++++++..+...+|+.++|+++ |++++|+.+++.++..+...+..+++.+..+.++|++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356789999999999999999999999999999986 3578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHH
Q 008783 348 KARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGAS 427 (553)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 427 (553)
++++..+.++.++++.+++..++...+.+++..+++.|+++.+.+..|+++..++.++..+.....+++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988898999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 428 INLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 428 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
.++++. ++++++.+++.+..++|+.|+++|+.+++.+.+++...++.+
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 789999999988778999999999999999988877666654
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=3.4e-20 Score=193.12 Aligned_cols=205 Identities=21% Similarity=0.276 Sum_probs=190.7
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChh
Q 008783 268 VRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPS 347 (553)
Q Consensus 268 ~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~ 347 (553)
-+.+|+++++++|.++++++..+...+|+.+++++++ +++|+++++.++..+.+.+..+++++..+++++++|+||++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 3458999999999999999999999999999999865 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC--CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchh
Q 008783 348 KARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFT--NDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTG 425 (553)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 425 (553)
++++..+.++.++++++++.+++.+++++++..+|+ .|+|+.+.+..|+++..++.++..+.....+++|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHh----hcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008783 426 ASINLGSFYLVGMPVAILMGFV----AKMGFPGLWLGLLAAQASCALVMLHVLC 475 (553)
Q Consensus 426 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 475 (553)
+.++++.. ++++++.+++.+. +++|+.|+|+|+.+++.+..++..+++.
T Consensus 183 ~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999865 7888998888753 3789999999999999998877665554
No 19
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.87 E-value=3.6e-20 Score=192.82 Aligned_cols=207 Identities=18% Similarity=0.102 Sum_probs=189.3
Q ss_pred hhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCC
Q 008783 266 DCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANR 345 (553)
Q Consensus 266 ~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~ 345 (553)
.+++.+|+++++++|.+++++...+...+|+.+++++++ +++|+++++.++..+...+..+++++..+.++|++|+||
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~--~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGP--EALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346789999999999999999999999999999999965 999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchh
Q 008783 346 PSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTG 425 (553)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 425 (553)
++++++..+.++.++++++++..++++ +.+++..+|+.|+|+.+.+..|+++..++.++..+.....+++|+.|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999998877765 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHh----hcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 426 ASINLGSFYLVGMPVAILMGFV----AKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 426 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
++.++++. ++++++.+++.+. +++|+.|+++|+.+++.+..+....++++
T Consensus 161 ~~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 161 MVISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 6799999887653 35899999999999988877666555544
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.86 E-value=6e-20 Score=190.89 Aligned_cols=208 Identities=13% Similarity=0.135 Sum_probs=195.0
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCCh
Q 008783 267 CVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRP 346 (553)
Q Consensus 267 ~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~ 346 (553)
+++..|+++++++|.+++++...+...+|+.+++++. |++++++++++.++..+...+..+++.+..+.+++++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 3467899999999999999999999999999999973 358999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhH
Q 008783 347 SKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGA 426 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (553)
+++++..+.+++++++++++++++++.+++++..+++.|+++.+.+..|+++..++.++..+.....+++|+.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 427 SINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
..++.+. ++++++.+++.+.+++|..|+++++.+++.+..++...++.+
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999886 789999999988778999999999999999998887766654
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.85 E-value=4.7e-19 Score=184.96 Aligned_cols=211 Identities=16% Similarity=0.123 Sum_probs=194.9
Q ss_pred hhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCC
Q 008783 265 MDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGAN 344 (553)
Q Consensus 265 ~~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~ 344 (553)
+..++.+|+++++++|.+++++...+...+|..+++++++ +++++++++.++..+...+..+++.+..|.+++++|++
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~--~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSA--TDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456789999999999999999999999999999999865 89999999999988888999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcch
Q 008783 345 RPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKT 424 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 424 (553)
|++++++..+.++.++++++++.+++++++++++..+++.|+++.+.+..++++..++.++..+.....+++++.|+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHh----hcCChhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008783 425 GASINLGSFYLVGMPVAILMGFV----AKMGFPGLWLGLLAAQASCALVMLHVLCRTD 478 (553)
Q Consensus 425 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 478 (553)
+++.++++. ++++++.+++.+. +.+|..|+++++.+++.+..++..++++|++
T Consensus 163 ~~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 163 TMVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999999987 6899998887642 4589999999999999999988877776543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=5.9e-17 Score=171.62 Aligned_cols=232 Identities=19% Similarity=0.110 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK 125 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 125 (553)
.++..|++++.++|..++++...+...+|+.+.+++|++++++++.+..+.++....+..+++++..|.++|++|++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34578999999999999999999999999988555999999999999999887644567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCch
Q 008783 126 LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQ----DDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITL 200 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (553)
+.++.++++..+...++++++++ +.++++++.++.+ +++....+..+++++.++.++..+.....+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999998876 7888999988865 557788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhh
Q 008783 201 PLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIP 280 (553)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p 280 (553)
.+++.++...++|++++++++.. +|..|+++++.+++.+..++..++.+|+... ....+..+.+.|....
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~a 447 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKG--------ILPFGVLKVLAKLVIA 447 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CCchHHHHHHHHHHHH
Confidence 99999999999999999999875 7999999999999999998887776544211 1113344555655555
Q ss_pred HHHHHHH
Q 008783 281 NCISVCL 287 (553)
Q Consensus 281 ~~~~~~~ 287 (553)
..++...
T Consensus 448 s~~m~~~ 454 (502)
T TIGR01695 448 SAIIGGV 454 (502)
T ss_pred HHHHHHH
Confidence 5444333
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.78 E-value=1.3e-15 Score=147.70 Aligned_cols=271 Identities=19% Similarity=0.189 Sum_probs=210.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHHHHH
Q 008783 53 IGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITL 131 (553)
Q Consensus 53 i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 131 (553)
+.|.+.....++++..+.+++...+++| +|++++|.++....+.+++......|++.+..+.+++...+ +++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888999999999999999999999 99999999999999999885566899999999999887432 44555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008783 132 QRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVL 211 (553)
Q Consensus 132 ~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 211 (553)
.......++.+++....... ...++.++. . ..+........++.........++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLI----ASFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444333333222 123333322 1 112222222225677888899999999999999999999988
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHHHHHHHH
Q 008783 212 LHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWW 291 (553)
Q Consensus 212 ~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~ 291 (553)
+..++..+++.. +.+..+..++..++..+..++...+.+++.+ .. +...+++..|++++++.|.+++.+..++.
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PR---FSFFSKKFFKEILRFGLPLFLSSLLSWLY 224 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc---ccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776666664 3458999999999999998888777765442 11 11334788999999999999999999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 008783 292 YELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNE 340 (553)
Q Consensus 292 ~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~ 340 (553)
...|.++++.+. |.+++|.|+++.++......+..++.++..|.+++.
T Consensus 225 ~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 225 SQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 689999999999999999999999999999999875
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.75 E-value=3.6e-16 Score=157.04 Aligned_cols=194 Identities=19% Similarity=0.173 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 008783 280 PNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFC 359 (553)
Q Consensus 280 p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~ 359 (553)
|.+++++...+...+++.+++++++ +++++++++.++..+...+..+++++..|.+++++|++|++++++..+.++++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 7788999999999999999999865 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHH
Q 008783 360 AVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMP 439 (553)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 439 (553)
.++++++.+++++++++++..+++.|++..+.+..+++++.++.++.++.....+++++.||.+.....++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999887 67888
Q ss_pred HHHHHHH-hhc-CChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 440 VAILMGF-VAK-MGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 440 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
..+++.+ ..+ +|..|+++++.+++++..++...+++|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887766 555 679999999999999988887776664
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.74 E-value=4.8e-15 Score=153.27 Aligned_cols=208 Identities=19% Similarity=0.173 Sum_probs=191.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK 125 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 125 (553)
..+..|++++...|..++....++..++|+.+.+++++..+++++.+..+.++....+..++++...|.+|+...++|.+
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~ 272 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE 272 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34568999999999999999999999999999999999999999999999999867888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCch
Q 008783 126 LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCG----QDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITL 200 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (553)
+.++.+++.+...+.+.+|+++. +.+++|++..+. .+.+-.+....++++++++.++..+...+...+.+.+|+|
T Consensus 273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~ 352 (451)
T PF03023_consen 273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence 99999999999999999999876 899999998775 3666677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008783 201 PLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGV 255 (553)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~ 255 (553)
.++..++++.++|++++.+++.. +|..|.++++.++..+..++..++++|+..
T Consensus 353 ~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 353 TPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999888886 799999999999999999988877765543
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=4.2e-18 Score=151.49 Aligned_cols=162 Identities=23% Similarity=0.331 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 008783 280 PNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFC 359 (553)
Q Consensus 280 p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~ 359 (553)
|..++++++.+.+.+++.+++++++ +++++++++.++.++...+..+++++..+.+++++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~--~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGP--EALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTT--CCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 7889999999999999999999965 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHH
Q 008783 360 AVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMP 439 (553)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 439 (553)
+++++++.++++.++++++..+|+.|+++.+.+..++++..++.++.++.....+++++.||++.+++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008783 440 VAIL 443 (553)
Q Consensus 440 ~~~~ 443 (553)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=1.4e-17 Score=148.01 Aligned_cols=160 Identities=26% Similarity=0.399 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHHHHHHHHHHHH
Q 008783 59 PTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLL 138 (553)
Q Consensus 59 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 138 (553)
|.++++++..+...+|+.+++++|++++++++++..+.++. ..+..|+++|..+.++|++|++|++++++.++.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999988 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHH
Q 008783 139 LSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISV-LLHVPL 216 (553)
Q Consensus 139 ~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~l 216 (553)
+++++++.++ +.+.+++..+++.|+++.+.+.+|+++..++.++..+.....+++++.|+++..++.+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999887 88899999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred HHH
Q 008783 217 NFL 219 (553)
Q Consensus 217 ~~~ 219 (553)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.69 E-value=7.6e-15 Score=154.97 Aligned_cols=202 Identities=16% Similarity=0.147 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChh------hHHHH----HHHHHHHHHHHHHHHHHHHhhHHHH
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGY-LGEL------ELAGG----SLSIGFANITGYSVLSGLAMGMEPI 114 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~------~~~~~----~~a~~~~~~~~~~~~~gl~~~~~~~ 114 (553)
.++.+|+++++++|..++++...+...+|+.++++ +++. +.+.+ +.+.++..+. ..+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999998 6432 12222 2445566666 57788999999999
Q ss_pred HHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008783 115 CGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYL 193 (553)
Q Consensus 115 is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 193 (553)
++++.|++|+++.++.+++.+.+..+++++++++ ..+.++++.++.+++ .+..+++++.+..++..+.....+++
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988776 788888888886543 35678999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 194 RSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYF 252 (553)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~ 252 (553)
++.||++..++.+++..++|++++++++....+|+.|+++++.+++.+..++..++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998873334799999999999999999888777654
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.68 E-value=2.8e-13 Score=138.02 Aligned_cols=240 Identities=17% Similarity=0.061 Sum_probs=202.3
Q ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc
Q 008783 41 PTPSEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYG 120 (553)
Q Consensus 41 ~~~~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g 120 (553)
+++....+..|++.+...|..++..++++..++|+.+-+.+.+-..+.+..+..+.++....+..++++..-|.+|++..
T Consensus 222 p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~ 301 (518)
T COG0728 222 PRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA 301 (518)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33333447899999999999999999999999999999999999999999999999998778999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008783 121 AKQWKLLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQ----DDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRS 195 (553)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 195 (553)
++|.++.++.++.++.+++++++|.++. ..+++|+...+.+ +++-.......+..+.++.++..+..++...+.+
T Consensus 302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYA 381 (518)
T COG0728 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYA 381 (518)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 8999999987743 4555666778899999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHH
Q 008783 196 QGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLL 275 (553)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 275 (553)
.+++|.++.+.+++.++|+.+++.+... +|..|.++++.++.+++..+.++.++|+....+ .+ .+.... ..
T Consensus 382 r~d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~-----~~~~~~-~~ 452 (518)
T COG0728 382 REDTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GR-----GWGLFL-IL 452 (518)
T ss_pred ccCCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cc-----hhhHHH-HH
Confidence 9999999999999999999999777765 688889999999999999888777765544322 22 233333 45
Q ss_pred HHHhhHHHHHHHHH
Q 008783 276 ALAIPNCISVCLEW 289 (553)
Q Consensus 276 ~~~~p~~~~~~~~~ 289 (553)
|..+-..+.....+
T Consensus 453 k~~l~~~i~~~~~~ 466 (518)
T COG0728 453 KLLLASAIMAAALL 466 (518)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444433
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.66 E-value=2.9e-13 Score=143.00 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=173.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783 47 LEEMKAIGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK 125 (553)
Q Consensus 47 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 125 (553)
++..|++++++.|...+++...++..+|+.++|+ +|++++|.|+.+.++.++....+...++....|.+++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4678999999999999999999999999999999 99999999999999998764556666778888999886 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 008783 126 LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTY 204 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (553)
+.++.+.+.+.+...+++|+.++ ..+++|++.++.+++ +..+...++++.+...+..+.......+++.||++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 99999999999999999998876 788899988876654 566788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 205 CSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYF 252 (553)
Q Consensus 205 ~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~ 252 (553)
.+++..+++++..+++... +|+.|+++++.+++.+...+..++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888777666654 699999999999999988887766643
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.62 E-value=1.8e-13 Score=141.20 Aligned_cols=199 Identities=11% Similarity=0.037 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCCh
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQW 124 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 124 (553)
.++..|++++++.|..++++...+...+|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 45678999999999999999999999999999986 99999999999999987543688999999999999995 567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 008783 125 KLLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLT 203 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (553)
++.++.+++.......+++++.++ ++++++++.++.+++ ++.+..+++++.++.++...+......+.++++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999888888888766 688999999987765 34467788888888888888777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008783 204 YCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVY 251 (553)
Q Consensus 204 ~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~ 251 (553)
...+...++++++++++++. +|..|+++++.+++.+...+......
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999886 79999999999999999887664443
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.61 E-value=2.6e-12 Score=122.91 Aligned_cols=248 Identities=17% Similarity=0.230 Sum_probs=181.1
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008783 69 SRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISF 147 (553)
Q Consensus 69 l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~ 147 (553)
..+++...+++| +|++++|.++....+..+.......|+...... ..++++++.++..+.......+.++++.+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999 999999999999999998855556777666554 22356666777776666554444444333
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 008783 148 MWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMG 227 (553)
Q Consensus 148 ~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g 227 (553)
+ ...+..++ .+++. ..++....+..++..+....+.++++++|.+......+...++...+..++.. .+.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 11122233 33332 23455666777888888999999999999999999999998888555544444 3358
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008783 228 IAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKA 307 (553)
Q Consensus 228 ~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~ 307 (553)
..+..++..++.++..++...+.+++ .+.. +..+..| .++.+.|..+..+..+.....+.++++.+. |.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK--LRLS------FKFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cCCC------chhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 88999999999988877665533211 1111 1122234 799999999999999999999999999954 569
Q ss_pred HHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHhh
Q 008783 308 AIASMGILIQITSLIY-VFPSSLSLGVSTRVGNE 340 (553)
Q Consensus 308 ~va~~~i~~~i~~l~~-~~~~~l~~~~~~~vs~~ 340 (553)
++|.|+++.++..... .+..++++...|.++++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999888 99999999999998863
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.56 E-value=2e-12 Score=136.16 Aligned_cols=187 Identities=26% Similarity=0.296 Sum_probs=170.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCCh
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQW 124 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 124 (553)
.++..|++++.++|..++.+...+...+|+.++++ +|++++|.|+.+..+.... ..+...++....|.+++...+++.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46789999999999999999999999999999999 9999999999888888877 788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 008783 125 KLLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLT 203 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (553)
++.++..++.+.+...++++..++ ..+.+|++..+.+++. ..+...+.++.+..++..+.......+++.|+.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999887 8888899988876653 2367788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHH
Q 008783 204 YCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWT 238 (553)
Q Consensus 204 ~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is 238 (553)
..+.++.++|++++++++.. +|..|+++++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999986 6889999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.36 E-value=2.1e-09 Score=112.19 Aligned_cols=421 Identities=13% Similarity=0.029 Sum_probs=253.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhhhccCChhHHHHHH
Q 008783 54 GKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANIT-GYSVLSGLAMGMEPICGQAYGAKQWKLLGITL 131 (553)
Q Consensus 54 ~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~-~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 131 (553)
.+.+.-+++.+++..+.+++-+.++-| ++|+.+|..++-..+..-+ .+.-=.++..+..+.-.+...+++.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 355667888999999999998888888 9999999886555444322 12334467666554333321122333333333
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhHHH----HHHcCCC-HH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC----
Q 008783 132 QRTVLLLLSTSLPISFMWL--NMKRI----LLWCGQD-DE---ISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQG---- 197 (553)
Q Consensus 132 ~~~~~~~~~~~i~~~~~~~--~~~~i----~~~l~~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~---- 197 (553)
+....+..+++++++.+++ ...|. ..+.... ++ ..+.....+.+...+.+...+...+....|..-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 3333334444433322211 11111 1111111 11 112222233444445555555555544444444
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhh-cCCch-----hH-HHHHHHHHHHHHHHHHHH-HHHhcccccccC----CCCch
Q 008783 198 ITLPLTYCSAISVLLHVPLNFLLVVH-FKMGI-----AG-VAIAMVWTNLNLFLLLSS-FVYFSGVHKDSW----VSPSM 265 (553)
Q Consensus 198 ~~~~~~~~~i~~~~~~i~l~~~li~~-~~~g~-----~G-aa~a~~is~~~~~~~~~~-~~~~~~~~~~~~----~~~~~ 265 (553)
|.+.-....+...+++..+.+..... .+++. .+ +.++..++++...+.... |..........+ .+...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 44444444444444443333222111 01111 11 234444555444432221 111111111111 11111
Q ss_pred ---hhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHh
Q 008783 266 ---DCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGL--LINPKAAIASMGILIQITSLI-YVFPSSLSLGVSTRVGN 339 (553)
Q Consensus 266 ---~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~--~~~g~~~va~~~i~~~i~~l~-~~~~~~l~~~~~~~vs~ 339 (553)
.....-+++++.....+...+.-.+..+.+.+++.. +. ..++-|.|++++++-+++ ..+...+-.+.-...++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~-t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLL-TFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccC-CHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011134788889999999999999999999988888 66 478999999999998885 45567788888888888
Q ss_pred hhcCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008783 340 ELGANRP---------SKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQT 410 (553)
Q Consensus 340 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~ 410 (553)
...+++. +++.+.....+++...+++.+..+....++.+..++.++.-....+...+++++.+.++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 7765433 3466677777888888888888888888888888876543223346889999999999999999
Q ss_pred HHHHHHhcCCCcchhHHHHHH--HHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 411 TGCGVLRGSARPKTGASINLG--SFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 411 ~~~~~l~~~g~~~~~~~~~~~--~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
+...+.++....+.....+-. ..-++.+..++++..+ ++|..|..+|.++.+.++.+....+++|
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777655542 1224555666777655 7899999999999999999998888866
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.18 E-value=2.3e-09 Score=110.42 Aligned_cols=205 Identities=16% Similarity=0.103 Sum_probs=188.2
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHhhhcCCCh
Q 008783 268 VRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSL-IYVFPSSLSLGVSTRVGNELGANRP 346 (553)
Q Consensus 268 ~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l-~~~~~~~l~~~~~~~vs~~~g~~~~ 346 (553)
+.+.|++.+++.|..+..+.......+...++|++++ .++++.+++.+..+. -+.+..++..+..+..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 6889999999999999999999999999999999986 799999999888776 5677889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhH
Q 008783 347 SKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGA 426 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 426 (553)
+.......++..+....+++.+.. +.+.+++...+++|+++...+..+.++.....+...........+|++++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999998888888888774 5556999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 427 SINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
++..... ++++++.+++.+..++|..|+.++..+++.+.......++..
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 9999877 899999999999999999999999999999988877766654
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=5.5e-07 Score=88.01 Aligned_cols=416 Identities=12% Similarity=0.023 Sum_probs=251.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCC---h
Q 008783 49 EMKAIGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQ---W 124 (553)
Q Consensus 49 ~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~---~ 124 (553)
...+..+.+.-.+..+++..+..++-+.++-| ++++.+|..++-..+.+-. ..-++-=..+......|..+ .
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT----iLFlsREair~A~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST----ILFLSREAIRLAELRIGSEPADTW 81 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH----HHHhhHHHHHHHhccCCCCCCccH
Confidence 34456677777888888888888888888888 9999999887655554432 22222222333333344333 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 008783 125 KLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDE-ISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLT 203 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (553)
.+..+..+.+.-+...+.+++.-+|+.... ..|+. ..+.-...+.+...+...-.+...+.-..|..-+.+.-.
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~wl~~~~-----s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFWLGFLS-----SSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHhh-----ccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 466666666666666666555433221110 01111 111112223334445555555555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--CCchhHHHHHHHHHHHHHHHHHHHHHHhccc-cccc---------CCCCc-h-hhHH
Q 008783 204 YCSAISVLLHVPLNFLLVVHF--KMGIAGVAIAMVWTNLNLFLLLSSFVYFSGV-HKDS---------WVSPS-M-DCVR 269 (553)
Q Consensus 204 ~~~i~~~~~~i~l~~~li~~~--~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~-~~~~---------~~~~~-~-~~~~ 269 (553)
+...+..++..+..+..++.. ..++.-.|+|.........+.+.++..+.+. .+.. +++.. . ....
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 667777777644444443321 2345555566555554444422233322222 1100 00000 0 0011
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHhhhcCCChh
Q 008783 270 GWSSLLALAIPNCISVCLEWWWYELMIMICGLLIN-PKAAIASMGILIQITSLI-YVFPSSLSLGVSTRVGNELGANRPS 347 (553)
Q Consensus 270 ~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~-g~~~va~~~i~~~i~~l~-~~~~~~l~~~~~~~vs~~~g~~~~~ 347 (553)
.=++..+.-.......++-.+..+-+..+++...- .-.+-|.|.+.++.-++. .++...+-.......++...+++.|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 22345555555556666666666666666553211 235678899998887764 4556788888888888888888777
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcch
Q 008783 348 KARISMI---VSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKT 424 (553)
Q Consensus 348 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 424 (553)
+.|+... ..++....+++.+..+....++.+..+++++.-....+...+++++.+.++.+++.+..++..+.+..+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 7776554 4556666666666666666677777777654322233668999999999999999999999999988776
Q ss_pred hHHHH---HHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 425 GASIN---LGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 425 ~~~~~---~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
....+ ++.. +..+.+++++..+ +|..|...|..+.+.++-+....++++
T Consensus 397 i~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65433 2333 5667888888766 788999999999999988877777665
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.89 E-value=1.1e-05 Score=75.73 Aligned_cols=261 Identities=12% Similarity=0.004 Sum_probs=162.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCh---hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCCh
Q 008783 48 EEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGE---LELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQW 124 (553)
Q Consensus 48 ~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~---~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 124 (553)
..++++.++-+|+.++.++..+-..+-+.-++|-.+ +.+++|+++..+.-++ ......+......+ +++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHH-----hcchh
Confidence 367889999999999999999999999999987322 3599999999998776 55555554443333 33333
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHH-H-HhhHHHH-HHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCch
Q 008783 125 KLLGITLQRTVLLLLSTSLPI-SFM-W-LNMKRIL-LWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITL 200 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~i~~-~~~-~-~~~~~i~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (553)
++. ....++.+...+...+ .++ + .+...++ ..++.++++.+.+...+.++.+.-++.++....++++.-++++.
T Consensus 82 srr--~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 82 SRR--KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhH--HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 222 2222222222222111 111 2 2222333 45578999999999999999999999999999999999777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-cC--Cch-hHHHHHHHHHHHHHH-HHHHHHHHhcccccccCCCCchhhHHhHHHHH
Q 008783 201 PLTYCSAISVLLHVPLNFLLVVH-FK--MGI-AGVAIAMVWTNLNLF-LLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLL 275 (553)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~~li~~-~~--~g~-~Gaa~a~~is~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 275 (553)
.....++...+..+++..+++.. ++ .++ .+. ++...+..+-+ ++.+-|...-....+...+..+.....+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipi-l~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPI-LALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHccccCccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 77777776666666655555532 11 111 111 22222222211 11122221111212222233344557799999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhcCchh----hHHHHHHHHHH
Q 008783 276 ALAIPNCISVCLEWWWYELMIMICGLLINPK----AAIASMGILIQ 317 (553)
Q Consensus 276 ~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~----~~va~~~i~~~ 317 (553)
++.+|.+...........+.+.++++...|. +++|...+.+.
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~yp 284 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYP 284 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccC
Confidence 9999999999999999999999999843343 55555444433
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.44 E-value=3.1e-05 Score=67.10 Aligned_cols=80 Identities=25% Similarity=0.351 Sum_probs=73.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 173 ILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYF 252 (553)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~ 252 (553)
+++++++.++..+.......+++.||++..+..++++.++|+++++++++. +|..|+++++.+++.+..++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999876 799999999999999999888777765
Q ss_pred cc
Q 008783 253 SG 254 (553)
Q Consensus 253 ~~ 254 (553)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 43
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.33 E-value=0.00017 Score=75.78 Aligned_cols=203 Identities=11% Similarity=0.037 Sum_probs=160.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCCh--
Q 008783 50 MKAIGKISGPTAMTGLILYSRAMISMLFLGY---LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQW-- 124 (553)
Q Consensus 50 ~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~---lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~-- 124 (553)
-+++++.+.....+.++-.+..--|.+++.. ...++-|.|+++.++-++..-.+..-+.-..-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3678889999999999999999999999988 46779999999999999987788888888888888887754332
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Q 008783 125 -------KLLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQ 196 (553)
Q Consensus 125 -------~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 196 (553)
++..+.+...+.+...+++++..+ -..++.++..++++.=....+...+++....+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 456677888888888888777665 666777777775433223335667888899999999999999999998
Q ss_pred CCchHHHH---HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008783 197 GITLPLTY---CSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFS 253 (553)
Q Consensus 197 ~~~~~~~~---~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~ 253 (553)
...+.... ..++..++.+..+++|+.. ++|..|..+|.++...+-.+....++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654443 3445556667778888876 78999999999999999998888777543
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.15 E-value=0.0005 Score=66.16 Aligned_cols=187 Identities=19% Similarity=0.189 Sum_probs=114.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHhhhcCCChhHHHHHHH
Q 008783 276 ALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVF-PSSLSLGVSTRVGNELGANRPSKARISMI 354 (553)
Q Consensus 276 ~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~-~~~l~~~~~~~vs~~~g~~~~~~~~~~~~ 354 (553)
|-+......+....+...+...++.+.. |+++.|.|+....+..+...+ ..|++++..-..++...+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3344455555555555555555566555 569999999999999887776 578888887777766432 233344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 008783 355 VSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFY 434 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 434 (553)
......++.++.......... .+..++ . ...+........++..+......++++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGNPS-L---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCCch-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333333333333333222222 333332 1 112222222222577788889999999999999888888776
Q ss_pred HhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 435 LVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 435 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
+..+...+++... ..+..+..++..++..+..++.....+|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444343333 2358899999999999888877777765
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.89 E-value=0.0032 Score=59.77 Aligned_cols=164 Identities=15% Similarity=0.238 Sum_probs=106.9
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008783 295 MIMICGLLINPKAAIASMGILIQITSLIYVFP-SSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTL 373 (553)
Q Consensus 295 ~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~-~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (553)
...++++.. |+++.|.|+....+..+...+. .++.+...- ..++++++.++.........++..+...++...
T Consensus 7 ~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13440_consen 7 FLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAIL 80 (251)
T ss_pred HHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554 4699999999999988877763 445444332 233566667777666665555544444443322
Q ss_pred hhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHHhhcCChh
Q 008783 374 MRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFP 453 (553)
Q Consensus 374 ~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~ 453 (553)
.. ..+ ++++ ...++.+..+..++..+.....+.+++.+|.+......+.... ..+.....+... +.+..
T Consensus 81 ~~----~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 149 (251)
T PF13440_consen 81 IA----YFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL-LRLLLLVLLLYL-GLNLW 149 (251)
T ss_pred HH----HHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHHH-HhhHH
Confidence 22 233 3332 3445566677778888999999999999999999998888763 333333333332 23888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008783 454 GLWLGLLAAQASCALVMLHVLC 475 (553)
Q Consensus 454 G~~~a~~~~~~~~~~~~~~~~~ 475 (553)
+..++..++.++..+......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998888776666444
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.87 E-value=8.9e-05 Score=64.17 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008783 396 LPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLC 475 (553)
Q Consensus 396 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 475 (553)
+++++++.++.++.....+++++.||+|..++.++++. ++++++.+.+ .+++|..|+.+++.+++.+..++.....+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999987 7999999988 55589999999999999999999988888
Q ss_pred hc
Q 008783 476 RT 477 (553)
Q Consensus 476 ~~ 477 (553)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.0019 Score=63.94 Aligned_cols=201 Identities=10% Similarity=0.032 Sum_probs=145.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhh--c-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh--
Q 008783 51 KAIGKISGPTAMTGLILYSRAMISMLFLG--Y-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK-- 125 (553)
Q Consensus 51 k~i~~~~~p~~~~~~~~~l~~~i~~~~i~--~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~-- 125 (553)
++..+...-...+.++-++..--|..++. . +.-++-|.|.+..++-.+..-.+..-+.-....+.+|...+++.|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 44556666666777788888888888887 3 566688889888888888767777777777777777777655554
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCch---
Q 008783 126 -LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITL--- 200 (553)
Q Consensus 126 -~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 200 (553)
++.+++...+.+...+|+.++.+ ...+.+.+.+++++.-....+...+++....+++.+++.+..+++.+.+..+
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 44556666677777777666555 6666777777766443333445678999999999999999999998877544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008783 201 PLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFS 253 (553)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~ 253 (553)
.......+..+..++++++++-. +|..|..+|.++...+-.+....++++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455567777888888887 5779999999999888877776666543
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.81 E-value=0.039 Score=53.52 Aligned_cols=319 Identities=12% Similarity=0.047 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhhHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 008783 99 TGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIP 178 (553)
Q Consensus 99 ~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~ 178 (553)
+...+..|+....++.+|...=++|.+++..-+.....+....+..++... -....+..... .. ....
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v-------f~~~~~~si~y---k~--l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV-------FFVNNQYSIVY---KI--LACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh-------hhhcCchhHHH---HH--HHHH
Confidence 335667788888999999888777777766555555555444444443221 11122222111 11 1222
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 008783 179 DLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKD 258 (553)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~ 258 (553)
.....+..-..-.++.+.++.+.....-.++.++.+.+..++-. .++.|..++..++..+.......++.+.-+.+.
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 22333444445678889999999888888888888888877765 499999999999999988877777654332211
Q ss_pred cCCCCch-hhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCch-----------hhHHHHHHHHHHHHHHHHhhh
Q 008783 259 SWVSPSM-DCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINP-----------KAAIASMGILIQITSLIYVFP 326 (553)
Q Consensus 259 ~~~~~~~-~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~g-----------~~~va~~~i~~~i~~l~~~~~ 326 (553)
...++- ..++....++ +......+.-.+++.+.=..++| ..++..+-....+.--...+.
T Consensus 217 -~i~FdFL~~~~~y~SLl-------lIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 217 -RIGFDFLLYRRKYPSLL-------LIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred -ccceehhhhhhcchHHH-------HHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 112210 0112222222 23333344444444433222211 122222222111111111112
Q ss_pred hhhhHHHHHHHHhhh----cC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHH
Q 008783 327 SSLSLGVSTRVGNEL----GA-------NRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIA 395 (553)
Q Consensus 327 ~~l~~~~~~~vs~~~----g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~ 395 (553)
..+-+...+.--+.+ |. ++.++.....++.+.-.+-+-...++.++++++.+...++-|+ ...+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHH
Confidence 223333333321111 11 2233444455566666666778888999999999999887654 34455
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 008783 396 LPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMG 445 (553)
Q Consensus 396 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 445 (553)
.++-.++.-+......+-.+.--..+-+..+..+..-. ..+..+.++..
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l 413 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHH
Confidence 55555555555555555555555566666655555432 44445555443
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.80 E-value=0.0093 Score=56.61 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=110.8
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-cCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCC
Q 008783 267 CVRGWSSLLALAIPNCISVCLEWWWYELMIMICGL-LINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANR 345 (553)
Q Consensus 267 ~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~-~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~ 345 (553)
.....++++++-+|..++.....+.-++.+.-+++ .-+..+.+|+|+++..+.-++..+...+-+....++.. +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 34668899999999999999999998888877776 33345779999999999999888888887766666532 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh-hhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcc
Q 008783 346 PSKARISMIVSLFCAVALGLM-AVLFTTLMRH-KWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPK 423 (553)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 423 (553)
.+ .++........+.+.... ..+..--++. .+..++.-|+++.+.+...+.++.+..+++++.....+++.=..++.
T Consensus 81 rs-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RS-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 22 222222222222222111 1111111222 24455677899999999999999999999999999999998666666
Q ss_pred hhHHHHHHH
Q 008783 424 TGASINLGS 432 (553)
Q Consensus 424 ~~~~~~~~~ 432 (553)
.....++..
T Consensus 160 iV~~aSI~~ 168 (345)
T PF07260_consen 160 IVGSASIAD 168 (345)
T ss_pred EeehHHHHH
Confidence 666555543
No 46
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=93.48 E-value=8.9 Score=38.18 Aligned_cols=28 Identities=4% Similarity=-0.046 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 347 SKARISMIVSLFCAVALGLMAVLFTTLM 374 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (553)
++..+..++-++......+|......+.
T Consensus 119 ~~~~~~~r~~l~~~~~~~~pl~~~~~~~ 146 (340)
T PF12794_consen 119 KERVQRLRRQLRWLIWVLVPLLFISIFA 146 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555555555444333
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=86.97 E-value=34 Score=33.97 Aligned_cols=136 Identities=15% Similarity=0.051 Sum_probs=90.6
Q ss_pred hhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHH
Q 008783 324 VFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCE 403 (553)
Q Consensus 324 ~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~ 403 (553)
.+..++.....-.+|..+=+|+.+++...+.-++.+....+...+.+.+ +-+|+ + +..+-...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~--si~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--Y--SIVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--h--hHHHHHHHHHHH
Confidence 3455666666777788777788888877777666655555554443221 12222 1 222222334455
Q ss_pred hhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 404 LGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCR 476 (553)
Q Consensus 404 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 476 (553)
+..+...+...++.+.+|.+.....-+++. ++...+++++-. .+..|..++.-++..+...+...++.|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 667777888889999999888877777665 677777766655 589999999999999887777666654
No 48
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=72.62 E-value=19 Score=36.46 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008783 358 FCAVALGLMAVLFTTLM 374 (553)
Q Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (553)
++.+-+.+|+.++.-+.
T Consensus 35 ~lv~~~~lP~liF~~i~ 51 (385)
T PF03547_consen 35 KLVFNVFLPALIFSSIA 51 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555544433
No 49
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=71.48 E-value=1.5e+02 Score=31.68 Aligned_cols=46 Identities=9% Similarity=-0.002 Sum_probs=29.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcc--ChhhHHHHHHHHHHHHHH
Q 008783 54 GKISGPTAMTGLILYSRAMISMLFLGYL--GELELAGGSLSIGFANIT 99 (553)
Q Consensus 54 ~~~~~p~~~~~~~~~l~~~i~~~~i~~l--g~~~~~~~~~a~~~~~~~ 99 (553)
-.+..-..++++...+..+.-..++-.+ ++..+|.+..+..+..++
T Consensus 13 r~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~L 60 (524)
T PF05977_consen 13 RRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILL 60 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3445566677888888888777777663 344566666555555543
No 50
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=71.11 E-value=1.4e+02 Score=31.27 Aligned_cols=15 Identities=0% Similarity=-0.040 Sum_probs=6.9
Q ss_pred hhHHHHHHHHhhhcC
Q 008783 329 LSLGVSTRVGNELGA 343 (553)
Q Consensus 329 l~~~~~~~vs~~~g~ 343 (553)
++......++..+++
T Consensus 303 ig~~~~G~lsDr~~~ 317 (476)
T PLN00028 303 FARPAGGYLSDVAAR 317 (476)
T ss_pred HHHhhhHHHHHHHHH
Confidence 333344455555544
No 51
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=69.44 E-value=2.3e+02 Score=33.16 Aligned_cols=302 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred HhhhcCCchhHHHH-------HHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHHHHHHHHH
Q 008783 220 LVVHFKMGIAGVAI-------AMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWY 292 (553)
Q Consensus 220 li~~~~~g~~Gaa~-------a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~ 292 (553)
+.....++-.+-++ .+.+..+...++....+.++++.+....+....-.+..++-+.+..-..+-.++..+..
T Consensus 455 l~~~~~~~~l~~~l~~~~~~~~~~~~l~~~lll~~~~~~~r~~~~~~l~~~~~~vg~v~~D~~~~T~~al~~t~l~alP~ 534 (1109)
T PRK10929 455 LLSLDTFSQLGKASVMMLTSKETLLPLFGALLLVGFSISSRRHYHAFLERSSSRVGKVTQDHFSLTLRTVFWSILVASPL 534 (1109)
T ss_pred HhccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHh------cCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 008783 293 ELMIMICGL------LINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLM 366 (553)
Q Consensus 293 ~~~~~l~~~------~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (553)
.+....+|+ ..+-..+++..-.+.-.....+++...+..--.....+. +-.++.-+..++-++....+.+|
T Consensus 535 pl~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~Gl~~~HF---~w~~~~v~~~~~~~~~~~~~~~p 611 (1109)
T PRK10929 535 PVLWAALGYGLQNAWPYPLAVAIGDGVTATVPLLWVFMICATFARPNGLFIAHF---GWPRERVARAMRYYLLSIGLIVP 611 (1109)
T ss_pred HHHHHHHHHHhhhhhhhhhHhhccHHHHHHHHHHHHHHHHHHHcCCCCeeHHhc---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHH
Q 008783 367 AVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGF 446 (553)
Q Consensus 367 ~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 446 (553)
+..+..++...=...+ .++.......+-.+.++.+...+...........+....-.....+-..+...|+..+...
T Consensus 612 l~~~~~~~~~~~~~~~---~~~lgr~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~P~~l~~l~ 688 (1109)
T PRK10929 612 LIMALITFDNLNDREF---SGTLGRLCFILLCGALSLVTLSLKRAGIPLYLDKEGSGDNIINHALWNLLIGAPLVAALAS 688 (1109)
T ss_pred HHHHHHHHhhCchhhh---hccHHHHHHHHHHHHHHHHHHHHHhcccchhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHhhhhhhccccccCCCCCcccccccCCC
Q 008783 447 VAKMGFPGLWLGLLAAQASCALVMLHVLCRTDW----------MVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPN 516 (553)
Q Consensus 447 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (553)
. .|...-+.....-...+..+.+.++.-..- +-..+|.+++.++... .....++++.....++..+
T Consensus 689 ~--~GY~yTa~~L~~~l~~S~~l~~~~~l~y~~~~R~l~i~~RRlA~~Ra~~rR~~~~a--qr~~~~~e~~~~~~~~~~~ 764 (1109)
T PRK10929 689 A--LGYLATAQALLARLETSVAIWFLLLVVYHIIRRWMLIQRRRIAFDRAKQRRAEILA--QRARGEEEAHHSSSPEGAI 764 (1109)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccccccccccccccc
Q ss_pred ccchhhhhhhhccch
Q 008783 517 IKDINLEAILSINDD 531 (553)
Q Consensus 517 ~~~~~~~~~~~~~~~ 531 (553)
+.+|..-++..|+.+
T Consensus 765 ~~eep~ldl~~Is~Q 779 (1109)
T PRK10929 765 EVEEPVIDLDAISAQ 779 (1109)
T ss_pred ccCCCccCHHHHHHH
No 52
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=67.07 E-value=1.2e+02 Score=30.62 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 008783 453 PGLWLGLLAAQASCALVMLHVLC 475 (553)
Q Consensus 453 ~G~~~a~~~~~~~~~~~~~~~~~ 475 (553)
.-...+....+++..+.+...+.
T Consensus 144 ~~~~a~~aaDnv~~~~~~~~l~~ 166 (378)
T PF05684_consen 144 SLFAAALAADNVVMALWFAFLLA 166 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544443
No 53
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=60.20 E-value=2.2e+02 Score=29.61 Aligned_cols=18 Identities=0% Similarity=-0.178 Sum_probs=9.4
Q ss_pred hhhhhHHHHHHHHhhhcC
Q 008783 326 PSSLSLGVSTRVGNELGA 343 (553)
Q Consensus 326 ~~~l~~~~~~~vs~~~g~ 343 (553)
...++......++..+++
T Consensus 306 ~~~ig~~~~G~lsDr~g~ 323 (467)
T PRK09556 306 GALVGSLLWGWLSDLANG 323 (467)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 344555555556665554
No 54
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=58.44 E-value=50 Score=25.07 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 008783 329 LSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLM 366 (553)
Q Consensus 329 l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (553)
++......+-..+.+||++++++..+++..++.+-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34444556777888999999999999998887654443
No 55
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=56.33 E-value=4.1e+02 Score=31.51 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008783 186 LHPLRVYLRSQGITLPLTYCSAISVLLHV 214 (553)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i 214 (553)
...+...+...++.+...+.+....+..+
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~ 158 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAIL 158 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHH
Confidence 33455556666666666555555444433
No 56
>PRK08156 type III secretion system protein SpaS; Validated
Probab=48.65 E-value=3e+02 Score=27.68 Aligned_cols=23 Identities=9% Similarity=-0.080 Sum_probs=13.9
Q ss_pred HHHhccHHHHHHHHHHHhhhhhh
Q 008783 473 VLCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
.+.|..|.++.+-++++.++|..
T Consensus 198 ~~Qr~~~~k~lkMSkqEvKdE~K 220 (361)
T PRK08156 198 IAEYFLHMKDMKMDKQEVKREYK 220 (361)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH
Confidence 34455566666666666666654
No 57
>PRK11281 hypothetical protein; Provisional
Probab=48.13 E-value=5.3e+02 Score=30.43 Aligned_cols=270 Identities=11% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCc-----hh
Q 008783 232 AIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLIN-----PK 306 (553)
Q Consensus 232 a~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~l~~~~~~-----g~ 306 (553)
........+...++.....+++++.+....+....-.+..++-+.+..-..+-.++-.+...+....+|+... .+
T Consensus 496 ~~~~~~~~~~lll~~~~~~~~r~~~~~~l~~~~~~ig~~~~D~~~~T~~al~~t~l~alp~~l~~~~~g~~~~~~~~~~~ 575 (1113)
T PRK11281 496 LFIALLLFLPLLLIAGLIRWRKKWIKARLQKLAADIGTLKRDSQLHTPKAILITLLLALPVTLIFLAVGLILLTDAFNQS 575 (1113)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcH
Q 008783 307 AAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDA 386 (553)
Q Consensus 307 ~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~ 386 (553)
..++.+....-+..+++.+...+..--.....+. |-.++.-+..++-++....+.+|+.++..+....=..++.+.
T Consensus 576 ~~~~~~~~~~~~~w~~~~~~~~~~~~~Gl~~~HF---~w~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~d~- 651 (1113)
T PRK11281 576 ELLWSWSLKLALFWLVFATCYRVLRPNGVAERHF---GMPKEQVSHFRRQIVRLSLALLPLLFWSVVAELSPLGLADDV- 651 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeeHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhhhh-
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 008783 387 EILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASC 466 (553)
Q Consensus 387 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~ 466 (553)
......++++..+...+.-.+...-+..+.. ..-.++..++...|+..+.... .|...-+.....-...+
T Consensus 652 -----lg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~P~~l~~l~~--~GY~yTa~~l~~~l~~s 721 (1113)
T PRK11281 652 -----IGQAVIIIALALIAFLVWPLCRESWRDKESH---TLRLVVRTVLTIAPIALIVLVV--LGYYYTALRLIGRLIET 721 (1113)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhcccccccch---HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhccH----------HHHHHHHHHHhhhhhhccccccCCCCCcccccccCCCccchhhhhhhhcc
Q 008783 467 ALVMLHVLCRTDW----------MVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPNIKDINLEAILSIN 529 (553)
Q Consensus 467 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (553)
..+.+.++.-..- +-..++.+++.++.. .+.+|..+..||+.-+...++
T Consensus 722 ~~l~~~~~l~~~~~~R~l~i~~RRla~~ra~~rR~~~~--------------~~~~e~~~~~ee~~~~~~~i~ 780 (1113)
T PRK11281 722 LYLLIIWNLLYQTVLRGLSVAARRLAYRRALAKRQNLV--------------KEGAEGAEPVEEPTLALEQVN 780 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hccccCCCCcccccCCHHHHH
No 58
>PRK01637 hypothetical protein; Reviewed
Probab=47.50 E-value=2.7e+02 Score=26.87 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=2.9
Q ss_pred HhhhcCC
Q 008783 338 GNELGAN 344 (553)
Q Consensus 338 s~~~g~~ 344 (553)
.+.++.+
T Consensus 117 N~i~~~~ 123 (286)
T PRK01637 117 NTIWRSK 123 (286)
T ss_pred HHHhCCC
Confidence 3344433
No 59
>PF13347 MFS_2: MFS/sugar transport protein
Probab=44.81 E-value=3.6e+02 Score=27.55 Aligned_cols=392 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHHH
Q 008783 51 KAIGKISGPTAMTGLILYSRAMISMLFLGY-LGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGI 129 (553)
Q Consensus 51 k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~ 129 (553)
+++..++......+.........-..+..+ +|-+. ...+.. ..+.--+..-..|+++.. -|+.+.|.
T Consensus 1 ~~~~ay~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~--------~~~g~i-~~~~~i~dai~dp~~G~~---sDr~~tr~ 68 (428)
T PF13347_consen 1 EKKLAYGIGDLGYNMIWSLLSSYLLYFYTDVLGLSP--------ALAGLI-LLVGRIWDAITDPLIGYL---SDRTRTRW 68 (428)
T ss_pred CcEEEeeHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--------HHHHHH-HHHHHHhhhhcCCcEEEE---Eeeecccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCchHHHHHHHH
Q 008783 130 TLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLR-SQGITLPLTYCSAI 208 (553)
Q Consensus 130 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~i~ 208 (553)
--++-..+...+...++....+..+...+-...+-.+......+.-......-..........-+ .++|.+...+.++.
T Consensus 69 Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~ 148 (428)
T PF13347_consen 69 GRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIF 148 (428)
T ss_pred cccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHH
Q ss_pred HHHHHH---HHHHHHhhhcCCchh--HHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCchhhHHhHHHHH--HHHh
Q 008783 209 SVLLHV---PLNFLLVVHFKMGIA--GVAIAMVWTNLNLFLLLSSFVYFSGV--HKDSWVSPSMDCVRGWSSLL--ALAI 279 (553)
Q Consensus 209 ~~~~~i---~l~~~li~~~~~g~~--Gaa~a~~is~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll--~~~~ 279 (553)
+.+.++ .+...++..++-+-. |..+...+.-.+..+......+..|. .+......+...++.+|+++ +.-.
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~ 228 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFR 228 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 008783 280 PNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFC 359 (553)
Q Consensus 280 p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~ 359 (553)
..+...++.++...+.....-++. +.+-...-..........+...++....+.+++.+| .++....
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~y~~---~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~g----------k~~~~~~ 295 (428)
T PF13347_consen 229 ILLLAFFLQWLAFALMNTFLPYYF---TYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFG----------KKKVYII 295 (428)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHH---HHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHcc----------ceeehhh
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc---------CCCcchhHHHHH
Q 008783 360 AVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRG---------SARPKTGASINL 430 (553)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~---------~g~~~~~~~~~~ 430 (553)
+.+......+.+++.+. ......+....+..+..+........+.+ .|+.+.....++
T Consensus 296 ~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~ 362 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGP-------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSV 362 (428)
T ss_pred hHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHh
Q ss_pred ------HHHHHhhHHHHHHHHHhhcCC----------hhHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 008783 431 ------GSFYLVGMPVAILMGFVAKMG----------FPGLWLGLLAAQASCALVMLHVLCRTDWMV 481 (553)
Q Consensus 431 ------~~~~~~~i~~~~~l~~~~~~g----------~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 481 (553)
++. .+...+.-.+....++. ..|+.+.+...-.+..++.....++-+-.|
T Consensus 363 ~~~~~k~~~-~la~~i~g~~l~~~Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l~~ 428 (428)
T PF13347_consen 363 NSFFIKIGQ-GLAGAIVGLLLALVGYDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPLTR 428 (428)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHhCcCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
No 60
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=43.54 E-value=3.4e+02 Score=26.84 Aligned_cols=195 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhHHHHHHHHHHHHHH
Q 008783 60 TAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLL 139 (553)
Q Consensus 60 ~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~ 139 (553)
..++.+++.+..-....+.-.....++....++-++.-+++..+..|. .++.+.+. .+..|...+.+...+--..
T Consensus 146 Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~---lTR~i~~k--~kg~~~~~~~f~p~ispi~ 220 (342)
T COG0798 146 VAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGV---LTRYILIK--KKGREWYESRFLPKISPIA 220 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--hccchHHHHHHHhhcChHH
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Q 008783 140 STSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFL 219 (553)
Q Consensus 140 ~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~ 219 (553)
+.++...+..+|+..-=....++.++...+..++.......+.. ......+.-.-+-..+...+..++-.-+.....
T Consensus 221 ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~---~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvA 297 (342)
T COG0798 221 LIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFIS---YFIAKALGLPYEDAAALVFTGASNNFELAIAVA 297 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCChhhhhceeeeeccccHHHHHHHH
Q ss_pred HhhhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCch
Q 008783 220 LVVHFKMG-IAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSM 265 (553)
Q Consensus 220 li~~~~~g-~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (553)
... +| -.|+|++++++.++...++..+.+--++.++.+.+.++
T Consensus 298 i~l---fG~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~~ 341 (342)
T COG0798 298 IAL---FGLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNER 341 (342)
T ss_pred HHh---cCccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccCC
No 61
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=41.75 E-value=43 Score=25.24 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=3.9
Q ss_pred HHhccHHHHHHHHHHHhhh
Q 008783 474 LCRTDWMVQAERAKELTQT 492 (553)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~ 492 (553)
++|.+.+++..+-.++..+
T Consensus 30 Yrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 30 YRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp ---------CHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHc
Confidence 3343333444443333333
No 62
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=41.71 E-value=3.1e+02 Score=25.92 Aligned_cols=84 Identities=7% Similarity=-0.036 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcc
Q 008783 344 NRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPK 423 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 423 (553)
+..+..+|....+..++....+.=++..+.+++ ..++.++.+....+...+ |..-..++..+.....-.-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~f-W~~~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGF-WFISSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeeh-HHHHHHHHHHHHHHHHHHHhcccccc
Confidence 456666666666666666666666777766765 556655555444443333 33334444444444433355666666
Q ss_pred hhHHHHH
Q 008783 424 TGASINL 430 (553)
Q Consensus 424 ~~~~~~~ 430 (553)
.|.+-+.
T Consensus 186 LPar~SF 192 (261)
T PF10160_consen 186 LPARPSF 192 (261)
T ss_pred CCCCccH
Confidence 6654443
No 63
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=41.50 E-value=4.2e+02 Score=27.41 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 008783 307 AAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLM 366 (553)
Q Consensus 307 ~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (553)
--++.|+.......+ ...|.+|+...+.++.++-+.....=..++..+..
T Consensus 38 l~~siygl~~~~~~~----------~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~ 87 (432)
T PF06963_consen 38 LPVSIYGLVRSLSAI----------LFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCA 87 (432)
T ss_pred HHHHHHHHHHHHHHH----------HhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHH
Confidence 446666666655444 45678888887666555555544444444444333
No 64
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=38.95 E-value=2e+02 Score=25.11 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=28.8
Q ss_pred HhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 008783 435 LVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQ 482 (553)
Q Consensus 435 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 482 (553)
++...-.|++..++.+.+..-++-+.+..+++..++.+-++..+...+
T Consensus 27 ivS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYkNvk~~lK 74 (170)
T PF07074_consen 27 IVSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYKNVKFVLK 74 (170)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445566666777888777777777766666655555444443333
No 65
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=38.39 E-value=2.1e+02 Score=26.36 Aligned_cols=40 Identities=3% Similarity=0.004 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 008783 122 KQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQ 161 (553)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~ 161 (553)
++++.....+..++...+.+-+++++++.+..++..+++.
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 3455555555555555444444444556666677777763
No 66
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=37.14 E-value=4.4e+02 Score=26.35 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=13.1
Q ss_pred HHhccHHHHHHHHHHHhhhhhh
Q 008783 474 LCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
+.|..|.++.+-.+++.++|..
T Consensus 204 ~qr~~~~k~lrMskqEVKdE~K 225 (347)
T TIGR00328 204 FQRWQYIKSLKMTKQEVKDELK 225 (347)
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 3445566666666666666554
No 67
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=35.77 E-value=4.8e+02 Score=26.43 Aligned_cols=135 Identities=15% Similarity=0.005 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcc
Q 008783 344 NRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPK 423 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 423 (553)
.+.++.+++.+++.+.+++......+++....-|+...-.+.+ ...++.+......+..........-.-.. .+
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~-----~~~~~~~~~~l~~lK~~~l~~~~~~~~~~-~~ 161 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS-----FWEFLLLLLFLLALKWWNLLLKWQELRFQ-PK 161 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHhh
Q 008783 424 TGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRT-----DWMVQAERAKELTQ 491 (553)
Q Consensus 424 ~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 491 (553)
...........+..+.....+...+ +....+...+.........++. +|++..+..+++..
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~I~~E~~r~~ 227 (386)
T PF05975_consen 162 WRRWKRLLRLILNALILYLLLWLSP-------WLLLILALLLLILLFFYLRRLKKKKRLDWERLIEEEQKRRM 227 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
No 68
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=35.66 E-value=4.9e+02 Score=26.46 Aligned_cols=16 Identities=6% Similarity=-0.089 Sum_probs=7.7
Q ss_pred HHhhHHHHHHhhhccC
Q 008783 107 LAMGMEPICGQAYGAK 122 (553)
Q Consensus 107 l~~~~~~~is~~~g~~ 122 (553)
++.-....+++.+|++
T Consensus 66 ~~~~~~G~l~dr~Grr 81 (413)
T PRK15403 66 ALQWLLGPLSDRIGRR 81 (413)
T ss_pred HHHHhhhHHHHHcCch
Confidence 3333344556665543
No 69
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=34.12 E-value=4.2e+02 Score=25.27 Aligned_cols=173 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCc
Q 008783 306 KAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTND 385 (553)
Q Consensus 306 ~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d 385 (553)
+.+++.---..-+.+.+..+...+......+.=++..++|+++.++..........+...+..++...++....+-+-
T Consensus 93 e~AialAvPva~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il-- 170 (265)
T TIGR00822 93 GTGIALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAML-- 170 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 008783 386 AEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQAS 465 (553)
Q Consensus 386 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~ 465 (553)
+.+-++...-+.+..--.|..++..++ +....-...-. ..+.+++..+.+++..++.+--.+.-.+
T Consensus 171 ~~iP~~v~~Gl~vaggmLPAvGfAmLl----------~~m~~k~~~~f----f~lGF~laayl~l~~l~iAiig~~~A~i 236 (265)
T TIGR00822 171 KAIPEVVTHGLQIAGGIIVVVGYAMVL----------RMMFKAYLMPF----FYLGFLFAAYTDFSLLAFGAVGGAGALL 236 (265)
T ss_pred HHCHHHHHHHHHHHHhhHHHHHHHHHH----------HHHhhcchHHH----HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhhhhhccccccCCCCCcccccccCCCccc
Q 008783 466 CALVMLHVLCRTDWMVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPNIKD 519 (553)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (553)
... .+..+++++ ..++..+++.|.+|+.+
T Consensus 237 ~~~------------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 265 (265)
T TIGR00822 237 YIQ------------------LNPKSHRAQ-------AAPSPAASKNELDDYDD 265 (265)
T ss_pred HHH------------------hcccccccc-------CCCCCCCCccccccccC
No 70
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=33.91 E-value=2.5e+02 Score=24.84 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 227 GIAGVAIAMVWTNLNLFLLLSSFVYF 252 (553)
Q Consensus 227 g~~Gaa~a~~is~~~~~~~~~~~~~~ 252 (553)
++.|...++.+++.+.+++...|.++
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 44566778888888888887777654
No 71
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=33.78 E-value=5.2e+02 Score=26.23 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=8.0
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 008783 450 MGFPGLWLGLLAAQASCALV 469 (553)
Q Consensus 450 ~g~~G~~~a~~~~~~~~~~~ 469 (553)
.|....++...+..++..++
T Consensus 446 ~~~~~~f~~~~~~~~~~~i~ 465 (481)
T TIGR00879 446 IGVGGVFIFFGGLNVLGLIF 465 (481)
T ss_pred cCccceehhHHHHHHHHHHH
Confidence 34444444443333333333
No 72
>PRK03612 spermidine synthase; Provisional
Probab=32.57 E-value=6.4e+02 Score=26.86 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Q 008783 201 PLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLL 246 (553)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~~~~ 246 (553)
....-++.+.+-.+...++++.. +|..+..+....-++...++.
T Consensus 150 ly~~ntlGa~~G~l~~~~vLlp~--lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 150 VLAADYLGALVGGLAFPFLLLPR--LGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hHhHHhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHH
Confidence 33344444444455556677665 576666555444444444333
No 73
>PF14184 YrvL: Regulatory protein YrvL
Probab=31.84 E-value=3.1e+02 Score=23.01 Aligned_cols=110 Identities=12% Similarity=0.137 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008783 132 QRTVLLLLSTSLPISFMWLNMKRILLWCGQDDE-ISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISV 210 (553)
Q Consensus 132 ~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 210 (553)
.....+.+.+.++.+........+++++|.+=+ ......-.+....++.++..+...+...+.-.+.++... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 334444444444445555666677788875422 222233334445667777777776666555554444333 23455
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Q 008783 211 LLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLF 243 (553)
Q Consensus 211 ~~~i~l~~~li~~~~~g~~Gaa~a~~is~~~~~ 243 (553)
.+...+++.-++..+.=+.++.+.+..--++..
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al 115 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISISTLSEIIFAL 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHH
Confidence 667777777766544333444444443333333
No 74
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=31.43 E-value=5.5e+02 Score=25.77 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=4.4
Q ss_pred ChhHHHHHHH
Q 008783 451 GFPGLWLGLL 460 (553)
Q Consensus 451 g~~G~~~a~~ 460 (553)
|-.|..+...
T Consensus 119 g~~~~~~~~~ 128 (385)
T PF03547_consen 119 GERGVAYAII 128 (385)
T ss_pred cchhhhhehH
Confidence 4444444433
No 75
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=31.09 E-value=4e+02 Score=24.08 Aligned_cols=33 Identities=3% Similarity=0.098 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhhhhhccCCcH--HHHHHHHHH
Q 008783 363 LGLMAVLFTTLMRHKWGRFFTNDA--EILELTAIA 395 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~~d~--~~~~~~~~~ 395 (553)
.+++.++++.-++-....+|+.++ +.++.+..+
T Consensus 16 tsF~LG~lf~~~~yD~~~Lw~~~~t~~~~d~a~~h 50 (196)
T PF08229_consen 16 TSFLLGVLFSNWPYDYPTLWSSPPTDEAFDNAETH 50 (196)
T ss_pred hHHHHHHHHHcccchhHHhcCCCCCHHHHHHHHHH
Confidence 445555555556666777786643 444444333
No 76
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=30.20 E-value=5.6e+02 Score=25.52 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=13.5
Q ss_pred HHhccHHHHHHHHHHHhhhhhh
Q 008783 474 LCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
+.|..|.++.+-.+++.++|..
T Consensus 203 ~qr~~~~k~lkMskqEvKdE~K 224 (342)
T TIGR01404 203 FQRYLFMKDLKMSKDEVKREYK 224 (342)
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 4455666666666666666664
No 77
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.83 E-value=5.9e+02 Score=25.60 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=13.1
Q ss_pred HHhccHHHHHHHHHHHhhhhhh
Q 008783 474 LCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
+.|..|.++.+-.+++.++|..
T Consensus 211 ~qr~~~~k~lkMskqEVKdE~K 232 (359)
T PRK05702 211 FQRWQYLKKLKMTKQEVKDEHK 232 (359)
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 3445566666666666666654
No 78
>PRK03612 spermidine synthase; Provisional
Probab=29.38 E-value=7.2e+02 Score=26.47 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008783 429 NLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLC 475 (553)
Q Consensus 429 ~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 475 (553)
+.++.++-.+...+++ .+.+|..+..+....-+++.+++.....+
T Consensus 154 ntlGa~~G~l~~~~vL--lp~lG~~~t~~~~a~l~~~~a~~~~~~~~ 198 (521)
T PRK03612 154 DYLGALVGGLAFPFLL--LPRLGLIRTAALTGSLNLLAALVFLWLFR 198 (521)
T ss_pred HhHHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555 44478877766666656655554444443
No 79
>PRK09108 type III secretion system protein HrcU; Validated
Probab=27.86 E-value=6.3e+02 Score=25.32 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=13.3
Q ss_pred HHhccHHHHHHHHHHHhhhhhh
Q 008783 474 LCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
+.|..|.++.+-++++.++|..
T Consensus 206 ~qr~~~~k~lkMSkqEvK~E~K 227 (353)
T PRK09108 206 IQRWLFIRDNRMSKDEVKREHK 227 (353)
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
Confidence 3455566666666666666654
No 80
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=27.39 E-value=6.4e+02 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=12.9
Q ss_pred HHhccHHHHHHHHHHHhhhhhh
Q 008783 474 LCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
+.|..|.++.+-.+++.++|..
T Consensus 204 ~qr~~~~k~lkMskqEvKdE~K 225 (349)
T PRK12721 204 FQRYKIMKQLKMSKDDVKQEYK 225 (349)
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
Confidence 3445566666666666666654
No 81
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=26.88 E-value=7.8e+02 Score=26.04 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhhhc----CCchhHHHHHHHHHHHHHHHHHH
Q 008783 184 SLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHF----KMGIAGVAIAMVWTNLNLFLLLS 247 (553)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~----~~g~~Gaa~a~~is~~~~~~~~~ 247 (553)
+...+++.+++..++.....+....+.+.+++..++--..+ +.+..|-=+..++.-++.+...+
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence 34455666677777666666665555555544433222111 13444555555555555554443
No 82
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=26.76 E-value=7.4e+02 Score=25.79 Aligned_cols=26 Identities=8% Similarity=-0.120 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008783 46 ALEEMKAIGKISGPTAMTGLILYSRA 71 (553)
Q Consensus 46 ~~~~~k~i~~~~~p~~~~~~~~~l~~ 71 (553)
+++.+|.++|-++|..+..++..+-.
T Consensus 12 d~~~~k~~~k~~i~~~i~~~l~~i~~ 37 (459)
T PF10337_consen 12 DRRSLKIMFKCWIAPWIALILCQIPP 37 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 56789999999999988877765443
No 83
>PRK06298 type III secretion system protein; Validated
Probab=26.74 E-value=6.6e+02 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=13.3
Q ss_pred HHhccHHHHHHHHHHHhhhhhh
Q 008783 474 LCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
+.|..|.++.+-++++.++|..
T Consensus 205 ~qr~~~~k~lkMSkqEvKdE~K 226 (356)
T PRK06298 205 YQRHNFAKELKMEKFEVKQEFK 226 (356)
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
Confidence 4455566666666666666654
No 84
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=25.78 E-value=6.2e+02 Score=24.52 Aligned_cols=21 Identities=14% Similarity=-0.008 Sum_probs=10.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 008783 271 WSSLLALAIPNCISVCLEWWW 291 (553)
Q Consensus 271 ~~~ll~~~~p~~~~~~~~~~~ 291 (553)
++-+.+.-+|.....+...+.
T Consensus 201 ~~Ii~~~iLP~~~p~il~~~~ 221 (296)
T PRK15111 201 LNILWYAVLPNITAGLVTEIT 221 (296)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 444555556655555554433
No 85
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=25.58 E-value=6.7e+02 Score=24.90 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=20.1
Q ss_pred CCCchhhHHhHHHHHHHHhhHHHHHHHH
Q 008783 261 VSPSMDCVRGWSSLLALAIPNCISVCLE 288 (553)
Q Consensus 261 ~~~~~~~~~~~~~ll~~~~p~~~~~~~~ 288 (553)
+..++..+...++.+|.++|.++-.+-+
T Consensus 79 ~~l~~~i~~~~~~~lk~~vPa~iYalqN 106 (345)
T KOG2234|consen 79 KSLSKEILAAPRETLKVSVPALIYALQN 106 (345)
T ss_pred hhcCHHHHhChHHHHHHHHHHHHHHHhh
Confidence 3444556777889999999998754443
No 86
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.57 E-value=2.3e+02 Score=27.67 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHhhcCCh--------hHHHHHHHHHHHHHHHHHHHHHHhccH
Q 008783 423 KTGASINLGSFYLVGMPVAILMGFVAKMGF--------PGLWLGLLAAQASCALVMLHVLCRTDW 479 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~--------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 479 (553)
+..-..++++ ++.+|..++-+.+. ++. .-.++......++.+++.+++++|++|
T Consensus 256 ~~mk~LTvvt--~IflP~t~IaGiyG-MNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 256 EIMKILTVVS--TIFIPLTFIAGIYG-MNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHh-CCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333445554 34456666554431 221 123334444445556667788888888
No 87
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.19 E-value=2.1e+02 Score=28.15 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCCh--------hHHHHHHHHHHHHHHHHHHHHHHhccH
Q 008783 427 SINLGSFYLVGMPVAILMGFVAKMGF--------PGLWLGLLAAQASCALVMLHVLCRTDW 479 (553)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~~~~g~--------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 479 (553)
..++++ .+.+|..++-+.+. ++. .-.|+..++..++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyG-MNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFG-VNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhc-cccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444 34457766655431 121 123344444445556667778888877
No 88
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.69 E-value=8.2e+02 Score=24.87 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=13.7
Q ss_pred HHHhccHHHHHHHHHHHhhhhhh
Q 008783 473 VLCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
.+.|..|.++.+-.+++.++|..
T Consensus 210 ~~qr~~~~k~lkMSkqEvKdE~K 232 (386)
T PRK12468 210 FYQITSHIKKLRMTKQDIRDEFK 232 (386)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH
Confidence 34455666666666666666654
No 89
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=21.74 E-value=62 Score=29.12 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=27.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 008783 450 MGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAE 484 (553)
Q Consensus 450 ~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (553)
+|...+=.++..+...+.+-.++-=+|++|+|+..
T Consensus 193 aG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 193 AGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred cchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 57777778888887777777777778899987654
No 90
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.38 E-value=8.4e+02 Score=24.50 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=13.1
Q ss_pred HHhccHHHHHHHHHHHhhhhhh
Q 008783 474 LCRTDWMVQAERAKELTQTNAT 495 (553)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~ 495 (553)
+.|..|.++.+-.+++.++|..
T Consensus 213 ~q~~~~~k~lkMSkqEVKdE~K 234 (358)
T PRK13109 213 WARFHWRRSLRMTKQEIKDEHK 234 (358)
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
Confidence 3455566666666666666654
Done!