Query 008783
Match_columns 553
No_of_seqs 306 out of 1881
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.2E-47 4.1E-52 400.4 37.8 432 44-478 5-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.1E-18 3.9E-23 181.2 19.8 205 47-252 234-445 (460)
3 1pw4_A Glycerol-3-phosphate tr 91.5 12 0.0004 37.0 31.9 22 450-471 410-431 (451)
4 3o7q_A L-fucose-proton symport 85.4 29 0.00099 33.9 29.5 38 53-90 28-67 (438)
5 4aps_A DI-OR tripeptide H+ sym 84.7 34 0.0012 34.1 28.8 55 414-469 413-467 (491)
6 4ev6_A Magnesium transport pro 23.0 1.2E+02 0.0039 28.8 5.9 50 427-479 281-338 (339)
7 2k1k_A Ephrin type-A receptor 20.4 1.2E+02 0.0041 18.3 3.4 18 228-245 13-30 (38)
8 2jwa_A Receptor tyrosine-prote 19.9 1.7E+02 0.0059 18.3 4.1 7 247-253 32-38 (44)
9 4hkr_A Calcium release-activat 10.6 7.7E+02 0.026 21.2 14.1 126 61-187 28-169 (214)
10 2iub_A CORA, divalent cation t 9.1 1.4E+02 0.0047 28.6 2.2 51 427-479 305-362 (363)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.2e-47 Score=400.35 Aligned_cols=432 Identities=20% Similarity=0.350 Sum_probs=399.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCC
Q 008783 44 SEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQ 123 (553)
Q Consensus 44 ~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~ 123 (553)
...+++.|++++.++|.+++++++.+++.+|+.+++|+|++++|+++++.++..+. ..+..|++++..+.++|++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34667899999999999999999999999999999999999999999999998776 78889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 008783 124 WKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLT 203 (553)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (553)
+++.++.+++++.+.+++++++.+++.+.++++.+++.+++..+.+..|++++.++.++..+.....+++|+.|+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999887777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh-c---CCchhHHHHHHHHHHHHHHHHHHHHHHhcccccc-c-CCCCchhhHHhHHHHHHH
Q 008783 204 YCSAISVLLHVPLNFLLVVH-F---KMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKD-S-WVSPSMDCVRGWSSLLAL 277 (553)
Q Consensus 204 ~~~i~~~~~~i~l~~~li~~-~---~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ll~~ 277 (553)
+.++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++++++++.+. + ++++.+.+++.+|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999985 4 6999999999999999999988888776554321 1 233335567889999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 008783 278 AIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSL 357 (553)
Q Consensus 278 ~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~ 357 (553)
|+|.+++++.+++.+.+++.+++.+++ +++|+|+++.++.++...+..+++++..|.+++++|++|.+++++..++++
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999965 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhh
Q 008783 358 FCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVG 437 (553)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 437 (553)
++++.++++++++++++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHh----hc-CChhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008783 438 MPVAILMGFV----AK-MGFPGLWLGLLAAQASCALVMLHVLCRTD 478 (553)
Q Consensus 438 i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 478 (553)
+|+.+++... ++ +|..|+|+++.+++.+..++....++|..
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 56 89999999999999999888777666543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.80 E-value=1.1e-18 Score=181.16 Aligned_cols=205 Identities=16% Similarity=0.197 Sum_probs=190.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChhH
Q 008783 47 LEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKL 126 (553)
Q Consensus 47 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 126 (553)
++..|++++.++|..++.+...+...+|+.+++++|++++|+++.+.++.++. ..+..+++++..|.+++.+|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45678899999999999999999999999999999999999999999999988 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 008783 127 LGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYC 205 (553)
Q Consensus 127 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (553)
.++..+.++.+...++++++++ +.+.+++..++..|+++.+.+..+++++.++.++.++..+..+++++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999999876 888899999998888888899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHhhh----cC-CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008783 206 SAISV-LLHVPLNFLLVVH----FK-MGIAGVAIAMVWTNLNLFLLLSSFVYF 252 (553)
Q Consensus 206 ~i~~~-~~~i~l~~~li~~----~~-~g~~Gaa~a~~is~~~~~~~~~~~~~~ 252 (553)
++++. ++++++++++.+. ++ +|+.|+++++.+++.+..++..++++|
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 8899999999886 66 899999999999999998877555443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.46 E-value=12 Score=37.01 Aligned_cols=22 Identities=9% Similarity=0.472 Sum_probs=12.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 008783 450 MGFPGLWLGLLAAQASCALVML 471 (553)
Q Consensus 450 ~g~~G~~~a~~~~~~~~~~~~~ 471 (553)
.|....++...+..++..++..
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHH
Confidence 5666666665555555444433
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=85.39 E-value=29 Score=33.90 Aligned_cols=38 Identities=3% Similarity=-0.105 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhccC--hhhHHHHH
Q 008783 53 IGKISGPTAMTGLILYSRAMISMLFLGYLG--ELELAGGS 90 (553)
Q Consensus 53 i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg--~~~~~~~~ 90 (553)
++....-..+..........+...+..++| +.+.+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 334444444444444444444444444443 44444443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=84.71 E-value=34 Score=34.13 Aligned_cols=55 Identities=9% Similarity=-0.091 Sum_probs=22.7
Q ss_pred HHHhcCCCcchhHHHHHHHHHHhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Q 008783 414 GVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALV 469 (553)
Q Consensus 414 ~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~ 469 (553)
...-...+.......+.... +.......+.....+.+....++......++..++
T Consensus 413 ~~~p~~~~g~~~g~~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 413 KLAPKAFNSQMMSMWFLSSS-VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp HHTTTTCSSSSTHHHHHHHH-HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433 22233333333344445555555444444444333
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.04 E-value=1.2e+02 Score=28.85 Aligned_cols=50 Identities=14% Similarity=0.330 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHhh-------cCC-hhHHHHHHHHHHHHHHHHHHHHHHhccH
Q 008783 427 SINLGSFYLVGMPVAILMGFVA-------KMG-FPGLWLGLLAAQASCALVMLHVLCRTDW 479 (553)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~~-------~~g-~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 479 (553)
..++++ ++.+|..++-+.+. ..+ ..|-|++ +...++.+++.+++++|++|
T Consensus 281 ~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~-l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 281 ILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLV-MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHH-HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 344444 35567776665542 111 2344444 44455666677788888888
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.40 E-value=1.2e+02 Score=18.27 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 008783 228 IAGVAIAMVWTNLNLFLL 245 (553)
Q Consensus 228 ~~Gaa~a~~is~~~~~~~ 245 (553)
+.|+.++.+.+-.+...+
T Consensus 13 IAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHH
Confidence 345555555444444333
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=19.92 E-value=1.7e+02 Score=18.28 Aligned_cols=7 Identities=0% Similarity=-0.083 Sum_probs=3.1
Q ss_pred HHHHHhc
Q 008783 247 SSFVYFS 253 (553)
Q Consensus 247 ~~~~~~~ 253 (553)
.+|++|+
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3444444
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=10.64 E-value=7.7e+02 Score=21.19 Aligned_cols=126 Identities=8% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cChhh------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh--------hccCChh
Q 008783 61 AMTGLILYSRAMISMLFLGY-LGELE------LAGGSLSIGFANITGYSVLSGLAMGMEPICGQA--------YGAKQWK 125 (553)
Q Consensus 61 ~~~~~~~~l~~~i~~~~i~~-lg~~~------~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~--------~g~~~~~ 125 (553)
..++....+.++....++-- +.... +.+|+....+.-.. ..+..-+++-+-|-+-.. ..+.-.+
T Consensus 28 A~S~lSALLaGFAMVAmVE~ql~~~~~~p~~LLi~fav~Ttllv~v-ml~AlMIsTcILPnIeav~~~h~~~~v~esPH~ 106 (214)
T 4hkr_A 28 ASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTTLLVAV-HMLALMISTCILPNIETVSNLHSISLVHESPHE 106 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHH-HHHHHHHHHHTTTC----------------CHH
T ss_pred HHHHHHHHHhccceeeEEEEeccCCCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhcccccccCCChHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008783 126 LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLH 187 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (553)
+.+.++..+..++..+|+++.+. +...-|+--+=...+.-+..+...+...+....|..-++
T Consensus 107 r~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~Fa~hFY 169 (214)
T 4hkr_A 107 RLHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIHFY 169 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=9.06 E-value=1.4e+02 Score=28.62 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHh-------hcCChhHHHHHHHHHHHHHHHHHHHHHHhccH
Q 008783 427 SINLGSFYLVGMPVAILMGFV-------AKMGFPGLWLGLLAAQASCALVMLHVLCRTDW 479 (553)
Q Consensus 427 ~~~~~~~~~~~i~~~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 479 (553)
..++++ ++.+|..++-+.+ |..+..-.++..++..++.++..+++++|++|
T Consensus 305 ~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 305 VLTIIA--TIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHH--HHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHH--HHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
Done!