Query 008783
Match_columns 553
No_of_seqs 306 out of 1881
Neff 9.9
Searched_HMMs 13730
Date Mon Mar 25 11:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008783.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008783hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 64.8 48 0.0035 29.7 35.0 26 449-474 406-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 49.6 86 0.0062 27.8 19.0 25 226-250 407-431 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 20.9 2.3E+02 0.017 23.9 35.8 65 51-123 7-74 (417)
4 d1oede_ f.36.1.1 (E:) Acetylch 7.6 5E+02 0.037 20.6 8.6 23 450-472 62-84 (260)
5 d1zrua2 b.108.1.4 (A:141-161) 4.8 35 0.0026 16.5 -1.2 14 525-538 5-18 (26)
6 d1oeda_ f.36.1.1 (A:) Acetylch 4.7 6.9E+02 0.05 19.2 9.8 21 451-471 62-82 (227)
7 d1oedb_ f.36.1.1 (B:) Acetylch 4.5 7.4E+02 0.054 19.3 8.6 14 452-465 63-76 (250)
8 d1oedc_ f.36.1.1 (C:) Acetylch 4.4 7.7E+02 0.056 19.2 10.3 52 423-474 32-85 (260)
9 d1nkzb_ f.3.1.1 (B:) Light-har 3.3 4.3E+02 0.032 14.5 4.6 33 345-377 7-39 (41)
10 d2iuba2 f.17.3.1 (A:286-349) M 3.3 4.6E+02 0.033 15.8 3.1 8 436-443 15-22 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=64.82 E-value=48 Score=29.67 Aligned_cols=26 Identities=12% Similarity=0.411 Sum_probs=15.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHH
Q 008783 449 KMGFPGLWLGLLAAQASCALVMLHVL 474 (553)
Q Consensus 449 ~~g~~G~~~a~~~~~~~~~~~~~~~~ 474 (553)
.+|..+.++......++..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777766666655555555444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=49.56 E-value=86 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 008783 226 MGIAGVAIAMVWTNLNLFLLLSSFV 250 (553)
Q Consensus 226 ~g~~Gaa~a~~is~~~~~~~~~~~~ 250 (553)
.|..+..+......++..++.....
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544455544444333
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=20.86 E-value=2.3e+02 Score=23.86 Aligned_cols=65 Identities=6% Similarity=-0.114 Sum_probs=32.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-c--ChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCC
Q 008783 51 KAIGKISGPTAMTGLILYSRAMISMLFLGY-L--GELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQ 123 (553)
Q Consensus 51 k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-l--g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~ 123 (553)
|+.+.++.-..+..+........-..++.+ + ++.++|.......+...+ ..-..-.++.++|+++
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i--------~~~~~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLL--------FQPLFGLLSDKLGLRK 74 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------THHHHHHHHHHHTTCT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCchH
Confidence 456666666666655555554444444443 3 455665554444333333 2222334566666543
No 4
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.58 E-value=5e+02 Score=20.59 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=11.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH
Q 008783 450 MGFPGLWLGLLAAQASCALVMLH 472 (553)
Q Consensus 450 ~g~~G~~~a~~~~~~~~~~~~~~ 472 (553)
..+.|.|++.++..+..+++...
T Consensus 62 vPli~~~~~~~~~~v~~sl~~t~ 84 (260)
T d1oede_ 62 VPLIGKYLIFVMFVSMLIVMNCV 84 (260)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555544444333
No 5
>d1zrua2 b.108.1.4 (A:141-161) Receptor binding protein, rbp, middle domain {Lactococcus lactis phage p2 [TaxId: 100641]}
Probab=4.76 E-value=35 Score=16.48 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=9.2
Q ss_pred hhhccchHhhhcCC
Q 008783 525 ILSINDDELVKSAS 538 (553)
Q Consensus 525 ~~~~~~~~~~~~~~ 538 (553)
+.+++++||+-+++
T Consensus 5 ldsisvndmtvsgs 18 (26)
T d1zrua2 5 LDSISVNDMTVSGS 18 (26)
T ss_dssp CSEEEESEEEESSC
T ss_pred cceEEEccEEEeee
Confidence 34567777777765
No 6
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.74 E-value=6.9e+02 Score=19.20 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=11.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHH
Q 008783 451 GFPGLWLGLLAAQASCALVML 471 (553)
Q Consensus 451 g~~G~~~a~~~~~~~~~~~~~ 471 (553)
.+.|.+++.++......++..
T Consensus 62 Pli~~y~~~~~~~v~~sli~t 82 (227)
T d1oeda_ 62 PLIGKYMLFTMIFVISSIIIT 82 (227)
T ss_dssp CCCTHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHH
Confidence 455666666555554444333
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.54 E-value=7.4e+02 Score=19.26 Aligned_cols=14 Identities=7% Similarity=-0.017 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHH
Q 008783 452 FPGLWLGLLAAQAS 465 (553)
Q Consensus 452 ~~G~~~a~~~~~~~ 465 (553)
+.|.++..+.....
T Consensus 63 ~i~~~~~~~~~~~~ 76 (250)
T d1oedb_ 63 IIIRYLMFIMILVA 76 (250)
T ss_dssp CCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 8
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.37 E-value=7.7e+02 Score=19.21 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=25.6
Q ss_pred chhHHHHH-HHHHHhhHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHH
Q 008783 423 KTGASINL-GSFYLVGMPVAILMGFVA-KMGFPGLWLGLLAAQASCALVMLHVL 474 (553)
Q Consensus 423 ~~~~~~~~-~~~~~~~i~~~~~l~~~~-~~g~~G~~~a~~~~~~~~~~~~~~~~ 474 (553)
|..+-+++ ++..++.+..+=.++... ...+.|.++..++..+...++...++
T Consensus 32 r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~~t~~V 85 (260)
T d1oedc_ 32 KMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIV 85 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444443 333233333333444432 34567777777766665555444433
No 9
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=3.26 E-value=4.3e+02 Score=14.52 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008783 345 RPSKARISMIVSLFCAVALGLMAVLFTTLMRHK 377 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (553)
+-++..+....+.+....++++.=++.+...++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 356777888888888888877777766666554
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.25 E-value=4.6e+02 Score=15.78 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=3.5
Q ss_pred hhHHHHHH
Q 008783 436 VGMPVAIL 443 (553)
Q Consensus 436 ~~i~~~~~ 443 (553)
+.+|..++
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
Done!