BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008784
         (553 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2YA24|NUOD_NITMU NADH-quinone oxidoreductase subunit D OS=Nitrosospira multiformis
           (strain ATCC 25196 / NCIMB 11849) GN=nuoD PE=3 SV=1
          Length = 417

 Score = 35.4 bits (80), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 14/167 (8%)

Query: 393 HLLWKSRRLLDI----VSAIASRLNWDY-DAVHVERGEKARNKDLWPNLDADTSPDALIS 447
           HLLW     LD+    V   A R   D  DA     G +       P       PD++  
Sbjct: 110 HLLWLGAHALDVGAMTVFLYAFRDREDLMDAYESVSGARMHAAYYRPGGVYRDLPDSMPQ 169

Query: 448 TLADKIENGRNVYIATNEPDTSFFNPLKD---KYSTHFLDEYKDLWDENSEWYSE----- 499
             A KI + +           S  + ++D   ++ T ++DEY+ L  +N  W        
Sbjct: 170 YKASKIHDEKTTKARNENRQGSLLDFIEDFTNRFPT-YVDEYETLLTDNRIWKQRLVGIG 228

Query: 500 TMKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETFNDLTNDCKDGIN 546
           T+   +  A+ F G M      E  LR K+  E ++ L  D   G+N
Sbjct: 229 TVSPERAMALGFTGPMLRGSGVEWDLRKKQPYEVYDQLDFDIPVGVN 275


>sp|A9NFP3|RSMH1_ACHLI Ribosomal RNA small subunit methyltransferase H 1 OS=Acholeplasma
           laidlawii (strain PG-8A) GN=rsmH1 PE=3 SV=1
          Length = 299

 Score = 33.1 bits (74), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 158 GDSDNAWKTAAFYKDYRRFTITRSANCTLSVVSIGDYHSGVNARKKRKRNQKPGFEKMPV 217
           GD +NAWK A    D       R  N TL +V I D    +  +  +  + K  F+ + +
Sbjct: 152 GDEENAWKIAGMIVD------RRPLNTTLELVEITD----IANKGMKGHSAKRVFQALRI 201

Query: 218 KDNAGLLVVGEAVNDTLPVI 237
           + N  L V+  A+N  L ++
Sbjct: 202 EVNKELEVLERALNSALELL 221


>sp|Q54QZ5|TREA_DICDI Trehalase OS=Dictyostelium discoideum GN=treh PE=3 SV=1
          Length = 594

 Score = 32.3 bits (72), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 268 FLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAASVLDKE-Q 326
           F+   G   YLNR+     T  +N  + ++N            D E L+E   +LD+E Q
Sbjct: 231 FIPNGGRIYYLNRSQPPLFTQMVNKYFEATNGS----------DIEFLQEILPILDQEYQ 280

Query: 327 FWSDWNKWQKKDG-------LNLYLVEDFRVTPMKLSEVKDSLIMRKFGSVEPDNYWYRV 379
           +W      +  +G       LNLY V +   +P   S  +D    + F SVE  +Y+Y  
Sbjct: 281 WWMTHRTTELTNGETGESVILNLYNVSN--NSPRPESYYEDFTDAQSFSSVEEKDYFYSS 338

Query: 380 CEGETES 386
                ES
Sbjct: 339 IASGAES 345


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,213,631
Number of Sequences: 539616
Number of extensions: 8915049
Number of successful extensions: 20968
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 20963
Number of HSP's gapped (non-prelim): 12
length of query: 553
length of database: 191,569,459
effective HSP length: 123
effective length of query: 430
effective length of database: 125,196,691
effective search space: 53834577130
effective search space used: 53834577130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)