Query 008784
Match_columns 553
No_of_seqs 65 out of 67
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 16:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 99.6 2.3E-16 5.1E-21 153.2 5.4 244 259-536 8-329 (351)
2 PF01531 Glyco_transf_11: Glyc 87.7 0.81 1.8E-05 45.9 4.9 31 256-286 36-66 (298)
3 PF05830 NodZ: Nodulation prot 54.3 7.1 0.00015 41.4 1.7 237 256-531 8-279 (321)
4 PF01320 Colicin_Pyocin: Colic 38.0 25 0.00053 31.0 2.2 30 420-453 46-75 (85)
5 cd03002 PDI_a_MPD1_like PDI fa 34.3 17 0.00037 29.8 0.6 34 123-156 54-87 (109)
6 KOG3705 Glycoprotein 6-alpha-L 33.8 36 0.00078 37.9 3.1 142 364-523 322-469 (580)
7 PF06900 DUF1270: Protein of u 32.1 17 0.00037 29.9 0.3 20 31-50 5-24 (53)
8 PF14399 Transpep_BrtH: NlpC/p 31.5 83 0.0018 31.0 5.0 54 403-474 53-106 (317)
9 PRK15367 type III secretion sy 30.8 64 0.0014 35.4 4.3 53 31-84 115-171 (395)
10 cd06592 GH31_glucosidase_KIAA1 28.0 1E+02 0.0022 31.4 5.0 49 397-452 28-82 (303)
11 KOG3849 GDP-fucose protein O-f 25.7 34 0.00073 36.6 1.2 64 257-327 34-103 (386)
12 cd06599 GH31_glycosidase_Aec37 25.5 1.2E+02 0.0025 31.2 4.9 46 399-451 29-84 (317)
13 PF05620 DUF788: Protein of un 25.5 1.1E+02 0.0024 29.1 4.4 29 62-90 62-90 (170)
14 PF14642 FAM47: FAM47 family 24.7 54 0.0012 34.1 2.4 31 429-460 130-160 (258)
15 PF09580 Spore_YhcN_YlaJ: Spor 23.9 1.8E+02 0.0039 26.9 5.4 72 399-475 74-149 (177)
16 cd06591 GH31_xylosidase_XylS X 22.5 2.3E+02 0.005 29.1 6.4 48 397-451 22-77 (319)
17 PF10294 Methyltransf_16: Puta 20.6 47 0.001 31.0 1.0 53 414-477 118-173 (173)
18 PF12841 YvrJ: YvrJ protein fa 20.3 52 0.0011 25.2 1.0 19 24-42 1-19 (38)
19 PF10917 DUF2708: Protein of u 20.1 38 0.00081 26.9 0.2 15 31-45 4-18 (43)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.63 E-value=2.3e-16 Score=153.20 Aligned_cols=244 Identities=27% Similarity=0.326 Sum_probs=123.5
Q ss_pred cCchhhHHHHHhhhhccccccceeeeecccccccccCCCCCCcccccceeecchhhhhccc-cccccchhhh-hhhhhhh
Q 008784 259 KSMNHFLWSFLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAA-SVLDKEQFWS-DWNKWQK 336 (553)
Q Consensus 259 kgm~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~~n~~g~~eegkd~r~yfD~ehl~~tv-~Vld~~qfw~-dw~~W~~ 336 (553)
.|.|.|.-+|+-|+-=|+.||||||||- .+.....+ +......-.|.-+||+++|++.+ +||+-.+|.. .|..=..
T Consensus 8 GGfnNQr~~~~~a~~~A~~LnRTLVLPp-~~~~~~~~-~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 8 GGFNNQRMGFENAVVFAKALNRTLVLPP-FIKHYHWK-DQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp SSHHHHHHHHHHHHHHHHHHT-EEE--E-EEEESSSS-----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEcCC-cccccccc-ccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 4899999999999999999999999987 33332222 11112334577899999999999 9988888762 2322000
Q ss_pred h--------------------------cCCcceeeee-Eeeecce-ecc------------cccceeeeecCCCCCCCce
Q 008784 337 K--------------------------DGLNLYLVED-FRVTPMK-LSE------------VKDSLIMRKFGSVEPDNYW 376 (553)
Q Consensus 337 ~--------------------------~~l~~r~v~~-~~Vtp~~-l~~------------~k~~li~rkf~~~ep~nyW 376 (553)
. ++........ ....+.- +.+ ....+.+..+....+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 0 0111110000 0111110 111 1123333334444333322
Q ss_pred eEeeccccccccccccchhccchhHHHHHHHHHhhcC---CCCceEEeecc-cc--------------------------
Q 008784 377 YRVCEGETESVVQRPWHLLWKSRRLLDIVSAIASRLN---WDYDAVHVERG-EK-------------------------- 426 (553)
Q Consensus 377 y~vCeg~~~s~i~~P~~~L~~skrLmdiv~~I~~rm~---~DfDavHVrRG-Dk-------------------------- 426 (553)
- ..+++ .|..++.|+++|+++..++. +.|-|||+|+| |+
T Consensus 166 ~--------~~~~r---~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~~~~~~ 234 (351)
T PF10250_consen 166 D--------RDLQR---YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGKKSINP 234 (351)
T ss_dssp G--------GGGGG---G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-GGGTT-
T ss_pred C--------ccceE---EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHHHHhHhhccccccc
Confidence 1 22233 78888999999999998877 99999999999 88
Q ss_pred -c-ccccCCCCCCCCCCHHHHHHHhhhccC--CCceEEEecCCCC--cCCccccccceeeeeccchhhhhccCchhhhhh
Q 008784 427 -A-RNKDLWPNLDADTSPDALISTLADKIE--NGRNVYIATNEPD--TSFFNPLKDKYSTHFLDEYKDLWDENSEWYSET 500 (553)
Q Consensus 427 -~-~nk~l~P~LD~DtspE~i~~~i~~~I~--~GR~LYIATnE~~--~~FFdpLk~kY~v~fLdDFk~Lw~~~sewy~Et 500 (553)
. ......| +.+.++..|++.+. ..++||||||+.. ...+++|++.|.-.+ .++.+.. ..|.
T Consensus 235 ~~~~~~~~~p------~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~---~~~~~~~----~~~~ 301 (351)
T PF10250_consen 235 EKKRRNGCCP------STPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVV---TKDDLLS----HEEL 301 (351)
T ss_dssp ----HHHHS--------HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHH---GGGT--E----E--S
T ss_pred hhhhhcCCCC------ChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhE---eccccCC----HHHh
Confidence 0 1112233 24556666666663 5699999999943 357788888887444 1111110 1122
Q ss_pred hhccCCcccccCCcchhhhhHhhhhcCceeEeeccc
Q 008784 501 MKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETFND 536 (553)
Q Consensus 501 ~~Ln~G~PV~fdgYmr~mVDteVf~rGK~fVeTF~~ 536 (553)
..+++.+..|||++|.+++..||+|..+
T Consensus 302 --------~~~~~~~~a~vD~~i~~~s~~Figt~~S 329 (351)
T PF10250_consen 302 --------EPLNDDQLAMVDQEICSRSDVFIGTCGS 329 (351)
T ss_dssp -------------S--HHHHHHHHHHSSEEEE-TT-
T ss_pred --------hhccccchhHHHHHHHhcCCEEEecCcc
Confidence 2344477899999999999999999876
No 2
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=87.75 E-value=0.81 Score=45.91 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=25.6
Q ss_pred CcCcCchhhHHHHHhhhhccccccceeeeec
Q 008784 256 DRCKSMNHFLWSFLCALGEAQYLNRTLVMDL 286 (553)
Q Consensus 256 d~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl 286 (553)
....++|-|++-+-..++.|+.++|+.+++.
T Consensus 36 ~~~g~LGNqmfqya~l~~lak~~~~~~~i~~ 66 (298)
T PF01531_consen 36 NLNGRLGNQMFQYASLYGLAKLNGRTAFIPI 66 (298)
T ss_pred EEcchHHHHHhHHHHHHHHHHhcCCccccch
Confidence 4567899999999899999998888877653
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=54.31 E-value=7.1 Score=41.39 Aligned_cols=237 Identities=17% Similarity=0.298 Sum_probs=101.9
Q ss_pred CcCcCchhhHHHHHhhhhccccccceeeeecc-cccccccCCCCCCcccccceeecchhhhhcccccc-c--------cc
Q 008784 256 DRCKSMNHFLWSFLCALGEAQYLNRTLVMDLT-ICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAASVL-D--------KE 325 (553)
Q Consensus 256 d~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~-mCLs~~~n~~g~~eegkd~r~yfD~ehl~~tv~Vl-d--------~~ 325 (553)
.+|.|||--+|||--|-.=|+-+|||||+|-+ -|.-..-. --+|.-+|+.-.=-..|+|+ | .+
T Consensus 8 r~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f-------~n~f~~ffepv~~i~~~~~~~~d~i~~~~~~g 80 (321)
T PF05830_consen 8 RRRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPF-------TNAFPVFFEPVEDIAGVRVICDDRINQFSFPG 80 (321)
T ss_dssp E--S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTT-------SBSHHHHB---SEETTEEEE-SGGGGT----S
T ss_pred eccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcc-------cccCCcccchhhhhcCceeEecchhhhhcCCC
Confidence 47999999999999999999999999999964 34331111 12344444332211234444 2 12
Q ss_pred hhhhhhhhhhhhcCCcceeeeeEee--ec------ceeccc--ccceeeeecCCCCCCCceeEeeccccccccccccchh
Q 008784 326 QFWSDWNKWQKKDGLNLYLVEDFRV--TP------MKLSEV--KDSLIMRKFGSVEPDNYWYRVCEGETESVVQRPWHLL 395 (553)
Q Consensus 326 qfw~dw~~W~~~~~l~~r~v~~~~V--tp------~~l~~~--k~~li~rkf~~~ep~nyWy~vCeg~~~s~i~~P~~~L 395 (553)
-|-..| |.+ ..+.--.-.|..+ .+ -+++++ .+|+|--+-.-. -|+-++|+-| |..|
T Consensus 81 ~~fp~~--w~~-p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~--------~c~~~aeR~i---f~sl 146 (321)
T PF05830_consen 81 PFFPAW--WNK-PSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMW--------RCDEEAEREI---FSSL 146 (321)
T ss_dssp SEESGG--GGS--GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TT--------SS-HHHHHHH---HHHS
T ss_pred CcChhH--HhC-CCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCC--------cchhHHHHHH---HHhC
Confidence 233333 332 1110000111100 01 112222 334443333322 3666677655 4566
Q ss_pred ccchhHHHHHHHHHhhcCCCCc--eEEeecccc---cccccCCCCCCCCCCHHHHH----HHhh--hccCCC--ceEEEe
Q 008784 396 WKSRRLLDIVSAIASRLNWDYD--AVHVERGEK---ARNKDLWPNLDADTSPDALI----STLA--DKIENG--RNVYIA 462 (553)
Q Consensus 396 ~~skrLmdiv~~I~~rm~~DfD--avHVrRGDk---~~nk~l~P~LD~DtspE~i~----~~i~--~~I~~G--R~LYIA 462 (553)
-..+....-+++|..+.-.++. +||||+|.- ..-..- =+.++.-+ ..|+ +...++ -.||+|
T Consensus 147 kpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h~~~------~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLA 220 (321)
T PF05830_consen 147 KPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDHAPY------WADEERALRQVCTAIDKAKALAPPKPVRIFLA 220 (321)
T ss_dssp -B-HHHHHHHHHHHHHHTTTSEEEEEEE---------------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhccCcc------ccCchHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 6777888889998776655664 689999943 211100 11233222 2232 223444 459999
Q ss_pred cCCCCcCCcccccccee--eeeccchhhhhccCchhhhhhhhccCCcccccCCcchhhhhHhhhhcCceeE
Q 008784 463 TNEPDTSFFNPLKDKYS--THFLDEYKDLWDENSEWYSETMKLNKGAAVEFDGYMRASVDTEVFLRGKKQI 531 (553)
Q Consensus 463 TnE~~~~FFdpLk~kY~--v~fLdDFk~Lw~~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~fV 531 (553)
||+.. .-+.||++|- ++--++|..- ....+.+--..+++ =...+||-..++|-.+-|
T Consensus 221 TDSae--Vid~fr~~FPdiiti~k~F~~~--~~g~Lhs~~~g~~g--------g~~ALIDM~LLSrCD~LI 279 (321)
T PF05830_consen 221 TDSAE--VIDQFRKKFPDIITIPKQFPAS--QAGPLHSAAVGIEG--------GESALIDMYLLSRCDYLI 279 (321)
T ss_dssp ES-HH--HHHHHHHHSTTEE------------------HHHHHHH--------HHHHHHHHHHHTTSSEEE
T ss_pred cCcHH--HHHHHHHHCCCeEEcccccCCC--CCCcCcccccccch--------HHHHHHHHHHHHhCCeEE
Confidence 99875 3566666665 2223344311 11122221112333 224778888888888777
No 4
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=37.97 E-value=25 Score=31.02 Aligned_cols=30 Identities=13% Similarity=0.401 Sum_probs=23.4
Q ss_pred EeecccccccccCCCCCCCCCCHHHHHHHhhhcc
Q 008784 420 HVERGEKARNKDLWPNLDADTSPDALISTLADKI 453 (553)
Q Consensus 420 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I 453 (553)
|-...|.+ -||.-++|-|||.|++.|++|=
T Consensus 46 HP~gSDLI----fYP~~~~edsPegIv~~vKeWR 75 (85)
T PF01320_consen 46 HPDGSDLI----FYPEDGREDSPEGIVKEVKEWR 75 (85)
T ss_dssp -TTTTHHH----HS-STTSTSSHHHHHHHHHHHH
T ss_pred CCCCCcee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 55566666 4788899999999999999985
No 5
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=34.34 E-value=17 Score=29.79 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=25.6
Q ss_pred CcccCCCHHHHHHHHHHHhhhccccceeeecccc
Q 008784 123 SPIDCTDPEVFHLLMSKAIDQFKDIHFYRFGKAV 156 (553)
Q Consensus 123 ~p~dC~Dp~v~~~~~r~~~~~F~~i~f~~fg~PV 156 (553)
.-+||.+.+.-.+..+++|+.+|.+.||.-|.++
T Consensus 54 ~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 87 (109)
T cd03002 54 AAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA 87 (109)
T ss_pred EEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence 3356665444567789999999999999998743
No 6
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.75 E-value=36 Score=37.95 Aligned_cols=142 Identities=19% Similarity=0.259 Sum_probs=76.0
Q ss_pred eeecCCCCCCCceeEeeccccccccccccchhccchhHHHHHHHHHhhcCCCC--ceEEeeccccccccc-CCCCCCCCC
Q 008784 364 MRKFGSVEPDNYWYRVCEGETESVVQRPWHLLWKSRRLLDIVSAIASRLNWDY--DAVHVERGEKARNKD-LWPNLDADT 440 (553)
Q Consensus 364 ~rkf~~~ep~nyWy~vCeg~~~s~i~~P~~~L~~skrLmdiv~~I~~rm~~Df--DavHVrRGDk~~nk~-l~P~LD~Dt 440 (553)
.|--|+|. .|+. |.--+++|||...+. +-.++--..+|||= =.|||||-||.-..- -||--.--+
T Consensus 322 ~rlHgdP~---vwwV---gqFikYL~Rpqp~t~------~~l~~a~k~lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~ 389 (580)
T KOG3705|consen 322 TRLHGDPP---VWWV---GQFIKYLMRPQPATQ------EKLDKALKSLGLDKPIVGVHVRRTDKVGTEAAFHALEEYME 389 (580)
T ss_pred HHhcCCCc---eeeH---HHHHHHHhCCChhhH------HHHHHHHHhCCCCCceeeEEEEecccccchhhhhhHHHHHH
Confidence 35557775 6763 555688999987654 22233333477664 478999999985541 111000011
Q ss_pred CHHHHHHHhhhccC-CCceEEEecCCCCcCCcccccccee-eeeccchhhhhc-cCchhhhhhhhccCCcccccCCcchh
Q 008784 441 SPDALISTLADKIE-NGRNVYIATNEPDTSFFNPLKDKYS-THFLDEYKDLWD-ENSEWYSETMKLNKGAAVEFDGYMRA 517 (553)
Q Consensus 441 spE~i~~~i~~~I~-~GR~LYIATnE~~~~FFdpLk~kY~-v~fLdDFk~Lw~-~~sewy~Et~~Ln~G~PV~fdgYmr~ 517 (553)
-.|...+.+++.-+ -.|-+|+|||.+. -..--|.+|- --+..|=+=-|. ..+.=|.++ .|++ |+.|=|.+-
T Consensus 390 ~vE~~f~~le~rg~~~~rRiflAsDDp~--vv~EAk~kYPnYe~igd~eia~~A~l~nRYTd~-sL~G---vIlDIh~LS 463 (580)
T KOG3705|consen 390 WVEIWFKVLEKRGKPLERRIFLASDDPT--VVPEAKNKYPNYEVIGDTEIAKTAQLNNRYTDA-SLMG---VILDIHILS 463 (580)
T ss_pred HHHHHHHHHHHhCCchhheEEEecCCch--hchHhhccCCCcEEeccHHHHHHhhccccchhh-hhhh---eeeeeeeec
Confidence 23445555555443 4688999999765 3555566664 333333332222 222234443 2333 566666655
Q ss_pred hhhHhh
Q 008784 518 SVDTEV 523 (553)
Q Consensus 518 mVDteV 523 (553)
++|-+|
T Consensus 464 ~~d~LV 469 (580)
T KOG3705|consen 464 KVDYLV 469 (580)
T ss_pred ccceEE
Confidence 555443
No 7
>PF06900 DUF1270: Protein of unknown function (DUF1270); InterPro: IPR009682 This entry is represented by Bacteriophage 92, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.
Probab=32.11 E-value=17 Score=29.85 Aligned_cols=20 Identities=20% Similarity=0.610 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhhheeccC
Q 008784 31 FTMFVLGVLIFTIIAATYEP 50 (553)
Q Consensus 31 f~~fV~~vl~fTv~A~ty~P 50 (553)
+--|++|+|.||++|+.-+|
T Consensus 5 ykSylIA~l~ftvlsi~L~~ 24 (53)
T PF06900_consen 5 YKSYLIANLCFTVLSIALMP 24 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34477888888888876653
No 8
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=31.49 E-value=83 Score=30.99 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCCceEEeecccccccccCCCCCCCCCCHHHHHHHhhhccCCCceEEEecCCCCcCCcccc
Q 008784 403 DIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKIENGRNVYIATNEPDTSFFNPL 474 (553)
Q Consensus 403 div~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I~~GR~LYIATnE~~~~FFdpL 474 (553)
++.+.+..++|+.+.-.+- .+++++++.|++.|..|+-|.|.+|.-.-.|+...
T Consensus 53 ~~~~~~~~~lG~~~~~~~~------------------~~~~~~~~~l~~~l~~g~pv~~~~D~~~lpy~~~~ 106 (317)
T PF14399_consen 53 DFEENLLERLGIKYEWREF------------------SSPDEAWEELKEALDAGRPVIVWVDMYYLPYRPNY 106 (317)
T ss_pred HHHHHHHHHCCceEEEEec------------------CCHHHHHHHHHHHHhCCCceEEEeccccCCCCccc
Confidence 8888999999965541111 35899999999999999999999998777777653
No 9
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=30.75 E-value=64 Score=35.36 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhhheeccCCCCCCCcchhhhhhhcccC----CceeecCCceeeccc
Q 008784 31 FTMFVLGVLIFTIIAATYEPEDPLFHPSAKITSFLTSQS----NATFKSDDTVVKTGE 84 (553)
Q Consensus 31 f~~fV~~vl~fTv~A~ty~P~DP~l~~s~~~t~~~t~~~----NaTf~~ddsv~~TGe 84 (553)
+.++++.+|+|+++..+=+| .|...+...+..+|.... +++..+|++|+.+|-
T Consensus 115 ~~~li~l~ll~~~~~ls~~~-~~~~~~~~~l~~~L~~p~l~~V~~~W~~dg~l~LsGy 171 (395)
T PRK15367 115 GVFLIFIGGMGVLLSISGQP-ETVNDLPLRVKFLLDKSNIHYVRAQWKEDGSLQLSGY 171 (395)
T ss_pred HHHHHHHHHHHHHeeccCCC-CCCCChHHHHHHHhhcccccceEEEECCCCcEEEEEE
Confidence 46677788888877777788 444556677777776633 677888999999994
No 10
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.02 E-value=1e+02 Score=31.36 Aligned_cols=49 Identities=16% Similarity=0.404 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHhhcCCCCceEEee------cccccccccCCCCCCCCCCHHHHHHHhhhc
Q 008784 397 KSRRLLDIVSAIASRLNWDYDAVHVE------RGEKARNKDLWPNLDADTSPDALISTLADK 452 (553)
Q Consensus 397 ~skrLmdiv~~I~~rm~~DfDavHVr------RGDk~~nk~l~P~LD~DtspE~i~~~i~~~ 452 (553)
....|+++|++++++ +--+|.+|+- .||+.-+++.||+ |.++++.|++.
T Consensus 28 s~~~v~~~~~~~~~~-~iP~d~i~iD~~w~~~~g~f~~d~~~FPd------p~~mi~~l~~~ 82 (303)
T cd06592 28 NQETVLNYAQEIIDN-GFPNGQIEIDDNWETCYGDFDFDPTKFPD------PKGMIDQLHDL 82 (303)
T ss_pred CHHHHHHHHHHHHHc-CCCCCeEEeCCCccccCCccccChhhCCC------HHHHHHHHHHC
Confidence 456789999999884 5578999885 6889989999996 88999988873
No 11
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.69 E-value=34 Score=36.58 Aligned_cols=64 Identities=36% Similarity=0.489 Sum_probs=44.9
Q ss_pred cCcCch---hhHHHHHhhhhccccccceeeeecccccccccCCCCCCcc---cccceeecchhhhhccccccccchh
Q 008784 257 RCKSMN---HFLWSFLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEE---GKDFRFYFDFEHLKEAASVLDKEQF 327 (553)
Q Consensus 257 ~Ckgm~---H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~~n~~g~~ee---gkd~r~yfD~ehl~~tv~Vld~~qf 327 (553)
+|--|| .|---||=.|+=|.-||||||+|-=+ .|- .+|- --.|++||-.|-|++---||--.+|
T Consensus 34 yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwi----Ey~---~pe~~n~~vpf~~yF~vepl~~YhRVitm~dF 103 (386)
T KOG3849|consen 34 YCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWI----EYK---HPETKNLMVPFEFYFQVEPLAKYHRVITMQDF 103 (386)
T ss_pred EccccccccchHHHHHHHHHHHHHhcccccCCcch----hcc---CCcccccccchhheeecccHhhhhhheeHHHH
Confidence 355554 45556777788899999999998654 222 2222 1358999999999988888776666
No 12
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.53 E-value=1.2e+02 Score=31.16 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhhcCCCCceEEee----------cccccccccCCCCCCCCCCHHHHHHHhhh
Q 008784 399 RRLLDIVSAIASRLNWDYDAVHVE----------RGEKARNKDLWPNLDADTSPDALISTLAD 451 (553)
Q Consensus 399 krLmdiv~~I~~rm~~DfDavHVr----------RGDk~~nk~l~P~LD~DtspE~i~~~i~~ 451 (553)
..++++|+.+.++ +=-+|+||+. ++++.-+++.||+ |+++++.|++
T Consensus 29 ~~v~~~~~~~r~~-~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd------p~~mi~~L~~ 84 (317)
T cd06599 29 EALLEFIDKCREH-DIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPD------PAAFVAKFHE 84 (317)
T ss_pred HHHHHHHHHHHHc-CCCeeEEEEeccccccCCCceeeeecCcccCCC------HHHHHHHHHH
Confidence 5899999998874 6578999985 4567778899996 8899999988
No 13
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=25.50 E-value=1.1e+02 Score=29.08 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.7
Q ss_pred hhhhcccCCceeecCCceeeccccccccc
Q 008784 62 TSFLTSQSNATFKSDDTVVKTGEDFMALN 90 (553)
Q Consensus 62 t~~~t~~~NaTf~~ddsv~~TGeD~~~~~ 90 (553)
-.++...+..+|..++.++..|+|++.+.
T Consensus 62 ~~~l~~~~rp~~~~~g~Lv~~G~DL~~~G 90 (170)
T PF05620_consen 62 YYFLEKMARPKYDETGELVDAGEDLNQPG 90 (170)
T ss_pred HHHHHHhCCCCcCCCCCeecCcccccCCc
Confidence 34566788999999999999999998665
No 14
>PF14642 FAM47: FAM47 family
Probab=24.71 E-value=54 Score=34.13 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=24.3
Q ss_pred cccCCCCCCCCCCHHHHHHHhhhccCCCceEE
Q 008784 429 NKDLWPNLDADTSPDALISTLADKIENGRNVY 460 (553)
Q Consensus 429 nk~l~P~LD~DtspE~i~~~i~~~I~~GR~LY 460 (553)
.--+||||..|+.|| |+..+-+.|.+.|.|=
T Consensus 130 PLAlyP~LeE~mPpd-Lll~VLevLDPerkLe 160 (258)
T PF14642_consen 130 PLALYPHLEEDMPPD-LLLKVLEVLDPERKLE 160 (258)
T ss_pred ccccCCCccccCCHH-HHHHHHhccCcccchh
Confidence 347899999999997 6666667778888763
No 15
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=23.89 E-value=1.8e+02 Score=26.94 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhhcCCCCceEEeecccccccccCCCCCCCCCCHHHHHHH----hhhccCCCceEEEecCCCCcCCcccc
Q 008784 399 RRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALIST----LADKIENGRNVYIATNEPDTSFFNPL 474 (553)
Q Consensus 399 krLmdiv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~----i~~~I~~GR~LYIATnE~~~~FFdpL 474 (553)
.++.+-+..+..++.+==||.=|+-|+-++--....+ .....+.|..+ +++..+..++|||.||. .+|..|
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~~--~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~---~~~~ri 148 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLDF--NRFNTKKIKKKVEKAVKSADPRIYNVYVSTDP---DIFDRI 148 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEecc--cccchhHHHHHHHHHHHHhCCCccEEEEEcCH---HHHHHH
Confidence 3444445555556776667777777777766533220 02334444444 44445555999999974 456554
Q ss_pred c
Q 008784 475 K 475 (553)
Q Consensus 475 k 475 (553)
+
T Consensus 149 ~ 149 (177)
T PF09580_consen 149 R 149 (177)
T ss_pred H
Confidence 4
No 16
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=22.54 E-value=2.3e+02 Score=29.11 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=38.7
Q ss_pred cchhHHHHHHHHHhhcCCCCceEEee------cc--cccccccCCCCCCCCCCHHHHHHHhhh
Q 008784 397 KSRRLLDIVSAIASRLNWDYDAVHVE------RG--EKARNKDLWPNLDADTSPDALISTLAD 451 (553)
Q Consensus 397 ~skrLmdiv~~I~~rm~~DfDavHVr------RG--Dk~~nk~l~P~LD~DtspE~i~~~i~~ 451 (553)
....++++|+.+.+. +--.|++++. +| +|.-+++.||+ |+++++.+++
T Consensus 22 ~~~ev~~~~~~~~~~-~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPd------p~~mi~~L~~ 77 (319)
T cd06591 22 TQEELLDVAKEYRKR-GIPLDVIVQDWFYWPKQGWGEWKFDPERFPD------PKAMVRELHE 77 (319)
T ss_pred CHHHHHHHHHHHHHh-CCCccEEEEechhhcCCCceeEEEChhhCCC------HHHHHHHHHH
Confidence 456789999998874 5577888876 67 89999999996 8888888885
No 17
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=20.57 E-value=47 Score=30.96 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=35.2
Q ss_pred CCCceEEeecccccccccCCCCCCCCCCHHHHHHHhhhccCCCceEEEecCCCC---cCCccccccc
Q 008784 414 WDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKIENGRNVYIATNEPD---TSFFNPLKDK 477 (553)
Q Consensus 414 ~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I~~GR~LYIATnE~~---~~FFdpLk~k 477 (553)
..||-|-. -|-.|+.++ .+.|++.++..+.++..+|||.-.|. ..||+.+++|
T Consensus 118 ~~~D~Ila--sDv~Y~~~~---------~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k~ 173 (173)
T PF10294_consen 118 HSFDVILA--SDVLYDEEL---------FEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKKH 173 (173)
T ss_dssp SSBSEEEE--ES--S-GGG---------HHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH---
T ss_pred ccCCEEEE--ecccchHHH---------HHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhhC
Confidence 37886554 488888765 68899999999999999999988763 4678777764
No 18
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=20.30 E-value=52 Score=25.24 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.8
Q ss_pred HHHhhhHHHHHHHHHHHhh
Q 008784 24 AMIGNLCFTMFVLGVLIFT 42 (553)
Q Consensus 24 ~~i~n~cf~~fV~~vl~fT 42 (553)
++|||+.|..+|..-|++=
T Consensus 1 ~~I~n~GFPi~va~yLL~R 19 (38)
T PF12841_consen 1 QLISNVGFPIAVAIYLLVR 19 (38)
T ss_pred CchhhcCcHHHHHHHHHHH
Confidence 3689999999999888753
No 19
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=20.13 E-value=38 Score=26.94 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhh
Q 008784 31 FTMFVLGVLIFTIIA 45 (553)
Q Consensus 31 f~~fV~~vl~fTv~A 45 (553)
+++|||++|+++-..
T Consensus 4 YsvfvFaiLaissvs 18 (43)
T PF10917_consen 4 YSVFVFAILAISSVS 18 (43)
T ss_pred eeehHHHHhhhhccc
Confidence 688999998877544
Done!