Query 008784
Match_columns 553
No_of_seqs 65 out of 67
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 11:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 1.9E-16 6.5E-21 158.2 9.4 275 244-551 20-401 (408)
2 3zy2_A Putative GDP-fucose pro 98.5 2.6E-07 8.8E-12 94.7 10.4 239 258-536 14-334 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 98.0 4.4E-06 1.5E-10 88.2 5.3 242 241-536 140-407 (526)
4 2hhc_A NODZ, nodulation fucosy 97.4 9.8E-05 3.4E-09 71.3 4.4 41 244-288 2-42 (330)
5 3u43_A Colicin-E2 immunity pro 36.7 18 0.00062 31.1 2.4 30 421-454 47-76 (94)
6 1gxg_A Colicin E8 immunity pro 34.7 21 0.00072 30.1 2.5 30 420-453 45-74 (85)
7 1fr2_A Colicin E9 immunity pro 34.7 21 0.00073 30.1 2.5 30 420-453 46-75 (86)
8 1unk_A Colicin E7; immunity pr 30.0 29 0.00099 29.6 2.6 30 420-453 47-76 (87)
9 3gdw_A Sigma-54 interaction do 26.8 91 0.0031 27.5 5.3 51 398-465 17-72 (139)
10 3gx1_A LIN1832 protein; APC633 22.9 1.2E+02 0.0042 26.2 5.3 51 398-465 17-70 (130)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.65 E-value=1.9e-16 Score=158.19 Aligned_cols=275 Identities=19% Similarity=0.191 Sum_probs=163.0
Q ss_pred cccceEEEeCCCCcCcCchhhHHHHHhhhhccccccce----eeeecccccccccCCCCCC-cccccceeecchhhhhcc
Q 008784 244 SRGRYLIYMGGGDRCKSMNHFLWSFLCALGEAQYLNRT----LVMDLTICLNSMYTSSNQD-EEGKDFRFYFDFEHLKEA 318 (553)
Q Consensus 244 ~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRT----fVMdl~mCLs~~~n~~g~~-eegkd~r~yfD~ehl~~t 318 (553)
++.|||.|----+ .|-|=|--.|+=|+.=|+.|||| ||||--.=+ ..|. ++.. +..-.|.-+||+++|++-
T Consensus 20 ~~~rYl~y~~~~g--~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~-~h~~-~~~~~~~~ipf~~fFDv~~L~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPP--EGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRL-YHWQ-SPDIHQVRIPWSEFFDLPSLNKN 95 (408)
T ss_dssp CCCEEEEECCCTT--CCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCS-CGGG-STTSCCCSBCGGGTBCHHHHHTT
T ss_pred cccceEEecCCCC--CcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCccc-cccc-CCcccceeccHHHhcCHHHHHhh
Confidence 5689999954211 45666666666677788999999 999933212 1222 3322 223458889999999999
Q ss_pred ccccccchhhhhhhh--hhh----hc---CCcceeeeeEeeecceecccccceeeeec--CCCCCCCce--------eEe
Q 008784 319 ASVLDKEQFWSDWNK--WQK----KD---GLNLYLVEDFRVTPMKLSEVKDSLIMRKF--GSVEPDNYW--------YRV 379 (553)
Q Consensus 319 v~Vld~~qfw~dw~~--W~~----~~---~l~~r~v~~~~Vtp~~l~~~k~~li~rkf--~~~ep~nyW--------y~v 379 (553)
+|||+-.+|-++... |.. +. +....... ...+.+...+.....+- +.+. +-+| -..
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~----~k~~~~~c~~~~~~~~~~~~~~~-gpfw~~~~v~~~~~~ 170 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWE----EKVDERPCIDQLLYSQDKHEYYR-GWFWGYEETRGLNVS 170 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCC----CCEEEECCSSCCSCEECTTSCEE-CCGGGCTTCEEEEEE
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhccccccc----chhhhhhhhhccccccccccCcc-CCcccccccccCCce
Confidence 999999999766532 110 00 00000000 00111111111111110 0000 0011 012
Q ss_pred ecccc--ccccc-------------------ccc------------chhccchhHHHHHHHHHhh---------------
Q 008784 380 CEGET--ESVVQ-------------------RPW------------HLLWKSRRLLDIVSAIASR--------------- 411 (553)
Q Consensus 380 Ceg~~--~s~i~-------------------~P~------------~~L~~skrLmdiv~~I~~r--------------- 411 (553)
|-.-- .+.+. .|. ..|..++.|+++++....+
T Consensus 171 c~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~ 250 (408)
T 4ap5_A 171 CLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQE 250 (408)
T ss_dssp EEEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCS
T ss_pred eEEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhCcccceeecccch
Confidence 21100 00000 011 1233688899988875542
Q ss_pred ------------cCCCCceEEeeccccccccc-CCCCCCCCCCHHHHHHHhhhccC--CCceEEEecCCCCcCCcccccc
Q 008784 412 ------------LNWDYDAVHVERGEKARNKD-LWPNLDADTSPDALISTLADKIE--NGRNVYIATNEPDTSFFNPLKD 476 (553)
Q Consensus 412 ------------m~~DfDavHVrRGDk~~nk~-l~P~LD~DtspE~i~~~i~~~I~--~GR~LYIATnE~~~~FFdpLk~ 476 (553)
+++.|.++|+||||+++.+. ..| |.+.+++.|++.+. ..+.||||||+.+..+++..+.
T Consensus 251 dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~p------s~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~~~l~~~ 324 (408)
T 4ap5_A 251 DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVP------SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKL 324 (408)
T ss_dssp SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSC------CHHHHHHHHHHHHHHHTCSCEEEEECCCHHHHHHHHHH
T ss_pred hHhhhhcccccccCCCccccccccccchhhhhccCC------CHHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHh
Confidence 35689999999999997653 223 46777777777664 6789999999988777665555
Q ss_pred ceeeeeccchhhhhccCchhhhhhhhccCCcccccCCcchhhhhHhhhhcCceeEeeccc--------------ccc---
Q 008784 477 KYSTHFLDEYKDLWDENSEWYSETMKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETFND--------------LTN--- 539 (553)
Q Consensus 477 kY~v~fLdDFk~Lw~~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~fVeTF~~--------------lt~--- 539 (553)
...+.+++++.+.... ..|||+ .|||++|..||+.||||..+ ++.
T Consensus 325 ~~~~~~~~~~~~~~~~-----------------~~d~~~-a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t 386 (408)
T 4ap5_A 325 LPEMVRFEPTWEELEL-----------------YKDGGV-AIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTT 386 (408)
T ss_dssp CTTEECCCCCHHHHHH-----------------HHHHHH-HHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGT
T ss_pred CCCcEEecCcchhhhc-----------------cCcchh-hHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCcc
Confidence 5566666666654442 234454 89999999999999999877 443
Q ss_pred ---cccccccccccC
Q 008784 540 ---DCKDGINTCNAA 551 (553)
Q Consensus 540 ---DCKdGintC~~~ 551 (553)
=|+|+-..|.-.
T Consensus 387 ~~~~c~~~~~~~~~~ 401 (408)
T 4ap5_A 387 YNRFCGDQEKACEQP 401 (408)
T ss_dssp SCBCCCTTCSSCCCC
T ss_pred ccccCCCCccCCCCC
Confidence 399999999754
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.54 E-value=2.6e-07 Score=94.65 Aligned_cols=239 Identities=16% Similarity=0.191 Sum_probs=137.4
Q ss_pred CcCc---hhhHHHHHhhhhccccccceeeeecccccccccCCCCCCcccccceeecchhhhhccccccccchhhhhhhhh
Q 008784 258 CKSM---NHFLWSFLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEAASVLDKEQFWSDWNKW 334 (553)
Q Consensus 258 Ckgm---~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~~n~~g~~eegkd~r~yfD~ehl~~tv~Vld~~qfw~dw~~W 334 (553)
|--| |-|.--||=+|+=|+-||||||+|-=+ .|.. |+ .----|.-||++|.|++---||.-.+|-+...-
T Consensus 14 CPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi----~y~~-~~-~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~lap- 86 (362)
T 3zy2_A 14 CPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFI----EFKH-PE-TKMIPFEFLFQVGTVAKYTRVVTMQEFTKKIMP- 86 (362)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEE----ECSS-SS-CEEECHHHHBCHHHHTTTSCEECHHHHHHHTHH-
T ss_pred CCCcCccccHHHHHHHHHHHHHhhCceEecCccc----cccC-Cc-ccccchhheeecchhhhhceeeeHHHHHHHhcc-
Confidence 6555 457778888999999999999999754 3432 22 111237889999999998888888888444321
Q ss_pred hhhcCCcceeeeeEeeeccee-----c-----ccccc--eeeee----------cCCCCCCCce------eEeecccc--
Q 008784 335 QKKDGLNLYLVEDFRVTPMKL-----S-----EVKDS--LIMRK----------FGSVEPDNYW------YRVCEGET-- 384 (553)
Q Consensus 335 ~~~~~l~~r~v~~~~Vtp~~l-----~-----~~k~~--li~rk----------f~~~ep~nyW------y~vCeg~~-- 384 (553)
.-=.++.|+.-=+... .++ + +..+. -.|.. |+.--.+..+ -..++-=.
T Consensus 87 -~~WP~~~R~~~C~~~~-~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~~p~~ 164 (362)
T 3zy2_A 87 -TVWPPEKRKAFCWTPR-QAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEKFPSE 164 (362)
T ss_dssp -HHSCGGGCEEEESSCB-C-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHHSCTT
T ss_pred -ccCCcccceEeecccc-ccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHhCCcc
Confidence 0002222211111100 110 0 00000 00111 1110000000 00111000
Q ss_pred c-cccc-----------cc----cchhccchhHHHHHHH-HHhhcCCCCceEEeecc-cccccccC-----CCCCCCC--
Q 008784 385 E-SVVQ-----------RP----WHLLWKSRRLLDIVSA-IASRLNWDYDAVHVERG-EKARNKDL-----WPNLDAD-- 439 (553)
Q Consensus 385 ~-s~i~-----------~P----~~~L~~skrLmdiv~~-I~~rm~~DfDavHVrRG-Dk~~nk~l-----~P~LD~D-- 439 (553)
+ .|+. .- ...|-+|+.+++.+++ |++.|+..|=+||.||| |+..--+. -|||=.-
T Consensus 165 ~~pVlAf~gaPa~FPv~~e~r~LqkYm~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~aC~hlk~~~~~~lfaSPQ 244 (362)
T 3zy2_A 165 EYPVLAFSSAPAPFPSKGKVWSIQKYLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRVCEHIDTTTNRPLFASEQ 244 (362)
T ss_dssp TCSEEEESSCSSCSSCCGGGGGGGGGCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHHHHTCCTTTCCCCTTTHH
T ss_pred cCceEeecCCCCCCCcChhhHhHHHhccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHHHhhhccccCcccccCCc
Confidence 0 1111 11 2244589999999999 77779999999999999 77622110 2444211
Q ss_pred -----------------CCHHHHHHHhhhccC--CCceEEEecCCCCcCCccccccce-----eeeeccchhhhhccCch
Q 008784 440 -----------------TSPDALISTLADKIE--NGRNVYIATNEPDTSFFNPLKDKY-----STHFLDEYKDLWDENSE 495 (553)
Q Consensus 440 -----------------tspE~i~~~i~~~I~--~GR~LYIATnE~~~~FFdpLk~kY-----~v~fLdDFk~Lw~~~se 495 (553)
-|.+.|++.|++++. .=+.||||||... +.+-|++.+ +|+-
T Consensus 245 C~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~--~~~ELk~~L~~~~v~vv~------------- 309 (362)
T 3zy2_A 245 CLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH--MIDEINEALKPYEIEAHR------------- 309 (362)
T ss_dssp HHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC--CHHHHHHHHGGGTCCEEC-------------
T ss_pred ccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH--HHHHHHHHhhccCceEEE-------------
Confidence 167889999998886 6799999999754 566665422 1221
Q ss_pred hhhhhhhccCCcccccCCcchhhhhHhhhhcCceeEeeccc
Q 008784 496 WYSETMKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETFND 536 (553)
Q Consensus 496 wy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~fVeTF~~ 536 (553)
++.. ..+||+.|..+++.||+|-.+
T Consensus 310 ---------------~~pe-~a~ID~~I~~~A~~FIGN~~S 334 (362)
T 3zy2_A 310 ---------------QEPD-DMYTSLAIMGRADLFVGNCVS 334 (362)
T ss_dssp ---------------CSSC-CHHHHHHHHHHSSEEEECTTC
T ss_pred ---------------eCCc-hhHHHHHHHHhCCEeecCccc
Confidence 1112 379999999999999998543
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.98 E-value=4.4e-06 Score=88.24 Aligned_cols=242 Identities=17% Similarity=0.230 Sum_probs=123.7
Q ss_pred ccccccceEEEeCCCCcCcCchhhHHHHHhhhhccccccceeeeecccccccccCCCCCCcccccceeecchhhhhcc-c
Q 008784 241 NSFSRGRYLIYMGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLKEA-A 319 (553)
Q Consensus 241 ~~f~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~~n~~g~~eegkd~r~yfD~ehl~~t-v 319 (553)
...+..|||.+.-+ ..-|||=++..++.+|-=|..+|||||+|.+-|. |..++ +.-||.- +++. .
T Consensus 140 ~~Cs~aK~Lv~~~~--~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~w~---Y~~g~-------w~~yF~P--~s~~C~ 205 (526)
T 2de0_X 140 KDCSKAKKLVCNIN--KGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWR---YATGG-------WETVFRP--VSETCT 205 (526)
T ss_dssp SCGGGSCEEEEECC--CSSCHHHHHHHHHHHHHHHHHHTCEEEEECTTCS---SCTTC-------GGGTBCC--SCSSCC
T ss_pred CcCCCCCEEEEEec--CCCchHHHHHHHHHHHHHHHhhCCEEEEECCCCC---cCCCC-------HHHhhhC--cCcccc
Confidence 35666799998653 2347888899999999999999999999998875 43221 4555554 3322 1
Q ss_pred cc-cccchhhhhhhhhhhhc-CCcceeeeeEeeecceecccccce--eeeec---------CCCCCCCceeEeecccccc
Q 008784 320 SV-LDKEQFWSDWNKWQKKD-GLNLYLVEDFRVTPMKLSEVKDSL--IMRKF---------GSVEPDNYWYRVCEGETES 386 (553)
Q Consensus 320 ~V-ld~~qfw~dw~~W~~~~-~l~~r~v~~~~Vtp~~l~~~k~~l--i~rkf---------~~~ep~nyWy~vCeg~~~s 386 (553)
+- -.+...|. ... .-...+|..--+. .+...+.-+ -+.+. +++ ..|++-+ .-+
T Consensus 206 ~~~~~~~~~w~------~~~~~~~~~vV~~~~i~--~~~~~~~~~~~~~P~~~~~~L~~l~~dp---~~w~~~q---~~~ 271 (526)
T 2de0_X 206 DRSGISTGHWS------GEVKDKNVQVVELPIVD--SLHPRPPYLPLAVPEDLADRLVRVHGDP---AVWWVSQ---FVK 271 (526)
T ss_dssp CCCCSCCCBCC------CTTGGGGCSEEEECCGG--GCSSCCSCCTTCEEGGGHHHHHHHCSCH---HHHHHHH---HHH
T ss_pred CCCccccCCCC------CcccCCCcceEEeeccc--cccccccccccccchhHHHHHHhccCCc---HHHHHHH---HHH
Confidence 11 11222221 110 0011111110000 000000000 00000 111 1333322 112
Q ss_pred ccccccchhccchhHHHHHHHHHhhc--CCCCceEEeecccccc-cccCCCCCCCCCCHHHHHHHhhhc--------cCC
Q 008784 387 VVQRPWHLLWKSRRLLDIVSAIASRL--NWDYDAVHVERGEKAR-NKDLWPNLDADTSPDALISTLADK--------IEN 455 (553)
Q Consensus 387 ~i~~P~~~L~~skrLmdiv~~I~~rm--~~DfDavHVrRGDk~~-nk~l~P~LD~DtspE~i~~~i~~~--------I~~ 455 (553)
.+ +.+.+.+.+.+++..+++ +.-.=+|||||||+.. ....+| .++.++.++++ -+.
T Consensus 272 yl------~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrGDk~~~E~~~~~-------~~~Y~~~v~~~~~~l~~~~~~~ 338 (526)
T 2de0_X 272 YL------IRPQPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHP-------IEEYMVHVEEHFQLLARRMQVD 338 (526)
T ss_dssp HH------TCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC-----CCCSCS-------HHHHHHHHHHHHHHHHTTSCCS
T ss_pred HH------cCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCccccccCC-------HHHHHHHHHHHHHHHHhhcCCC
Confidence 22 335566677777777664 5567799999999953 334444 34444444433 357
Q ss_pred CceEEEecCCCCcCCcccccccee-eeeccchhhhhccCchhhhhhhhccCCcccccCCcchhhhhHhhhhcCceeEeec
Q 008784 456 GRNVYIATNEPDTSFFNPLKDKYS-THFLDEYKDLWDENSEWYSETMKLNKGAAVEFDGYMRASVDTEVFLRGKKQIETF 534 (553)
Q Consensus 456 GR~LYIATnE~~~~FFdpLk~kY~-v~fLdDFk~Lw~~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~fVeTF 534 (553)
.+.+|||||.+. .++-++++|. ..+..|-+--|.. ...++.+ .++-...++|-.++++...+|+|+
T Consensus 339 ~~~ifLATDDp~--v~~e~k~~~p~~~~~~d~~~~~~a-----~~~~R~s------~~~l~~~l~DL~lLs~cd~~Vgt~ 405 (526)
T 2de0_X 339 KKRVYLATDDPS--LLKEAKTKYPNYEFISDNSISWSA-----GLHNRYT------ENSLRGVILDIHFLSQADFLVCTF 405 (526)
T ss_dssp SCEEEEEESCHH--HHHHHHHHCTTSEEECCCCSSCSS-----GGGGGTC------CTHHHHHHHHHHHHHHSSEEEECT
T ss_pred CCeEEEEcCCHH--HHHHHHHhCCCCEEecCccccccc-----Ccccccc------HHHHHHHHHHHHHHhcCCeeecCC
Confidence 899999999654 5777776553 1111211100110 0011111 111133689999999999999998
Q ss_pred cc
Q 008784 535 ND 536 (553)
Q Consensus 535 ~~ 536 (553)
.+
T Consensus 406 sS 407 (526)
T 2de0_X 406 SS 407 (526)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.40 E-value=9.8e-05 Score=71.29 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=36.5
Q ss_pred cccceEEEeCCCCcCcCchhhHHHHHhhhhccccccceeeeeccc
Q 008784 244 SRGRYLIYMGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLTI 288 (553)
Q Consensus 244 ~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~m 288 (553)
++.||++|...| |||-||..+..|+.-|+-.||++++|...
T Consensus 2 ~~~r~iv~~~~g----GLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 2 TKERFVISRRRT----GFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCCEEEEECCS----CHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCCEEEEeCCC----cHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 468999997544 89999999999999999999999999774
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=36.66 E-value=18 Score=31.13 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=23.2
Q ss_pred eecccccccccCCCCCCCCCCHHHHHHHhhhccC
Q 008784 421 VERGEKARNKDLWPNLDADTSPDALISTLADKIE 454 (553)
Q Consensus 421 VrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I~ 454 (553)
-...|.+ -||.=++|.|||.|++.|++|=.
T Consensus 47 P~gSDLI----fyP~~~~e~SPEgIv~~IKeWRa 76 (94)
T 3u43_A 47 PDGSDLI----YYPRDDREDSPEGIVKEIKEWRA 76 (94)
T ss_dssp TTTTHHH----HSCCTTSCSSHHHHHHHHHHHHH
T ss_pred CCccCee----eeCCCCCCCCHHHHHHHHHHHHH
Confidence 3334555 47888899999999999999853
No 6
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=34.68 E-value=21 Score=30.07 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=23.5
Q ss_pred EeecccccccccCCCCCCCCCCHHHHHHHhhhcc
Q 008784 420 HVERGEKARNKDLWPNLDADTSPDALISTLADKI 453 (553)
Q Consensus 420 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I 453 (553)
|-...|.+ -||+=++|.|||.|++.+++|=
T Consensus 45 HP~gSDLI----fyP~~~~e~spE~Iv~~ik~wR 74 (85)
T 1gxg_A 45 HPSGSDLI----YYPEGNNDGSPEAVIKEIKEWR 74 (85)
T ss_dssp CTTTTHHH----HSCCTTCCSSHHHHHHHHHHHH
T ss_pred CCCcCcee----ecCCCCCCCCHHHHHHHHHHHH
Confidence 44445555 3888889999999999999874
No 7
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=34.65 E-value=21 Score=30.08 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=23.8
Q ss_pred EeecccccccccCCCCCCCCCCHHHHHHHhhhcc
Q 008784 420 HVERGEKARNKDLWPNLDADTSPDALISTLADKI 453 (553)
Q Consensus 420 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I 453 (553)
|-...|.++ ||+=++|.|||.|++.+++|=
T Consensus 46 HP~gSDLIf----yP~~~~e~spE~Iv~~ik~wR 75 (86)
T 1fr2_A 46 HPSGSDLIY----YPKEGDDDSPSGIVNTVKQWR 75 (86)
T ss_dssp CTTTTHHHH----SCCTTCCCSHHHHHHHHHHHH
T ss_pred CCCcCceee----cCCCCCCCCHHHHHHHHHHHH
Confidence 444455553 888899999999999999884
No 8
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=29.97 E-value=29 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=23.9
Q ss_pred EeecccccccccCCCCCCCCCCHHHHHHHhhhcc
Q 008784 420 HVERGEKARNKDLWPNLDADTSPDALISTLADKI 453 (553)
Q Consensus 420 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I 453 (553)
|-...|++ -||.=++|-|||.|++.|++|=
T Consensus 47 HP~gsDLI----fYP~~~~edsPEgIv~~iKeWR 76 (87)
T 1unk_A 47 HPDGTDLI----YYPSDNRDDSPEGIVKEIKEWR 76 (87)
T ss_dssp CTTTTHHH----HSCCSSCCCSHHHHHHHHHHHH
T ss_pred CCCCCCee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 44555666 4777889999999999999984
No 9
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=26.82 E-value=91 Score=27.47 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHhhcCCCCceEEeecccccccccCCCCCCCCCCHHHHHHHhhhccCC-----CceEEEecCC
Q 008784 398 SRRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKIEN-----GRNVYIATNE 465 (553)
Q Consensus 398 skrLmdiv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I~~-----GR~LYIATnE 465 (553)
|..|.+.|+.|.+. . .+.++-+. .+.+||++++++++.|.. |.-|.|-||=
T Consensus 17 A~~l~~~a~~i~G~-~-~~~aid~~---------------~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~Dm 72 (139)
T 3gdw_A 17 ASSMLKTAQELLGT-S-IGTAMNMP---------------LTMEVQTMYEQLRNQVITQKESLNNGILLLTDM 72 (139)
T ss_dssp HHHHHHHHHHHHTC-C-CCEEEEEC---------------TTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECS
T ss_pred HHHHHHHHHHHcCc-c-cEEEEEcc---------------CCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 67899999999987 3 66666443 357899999998888743 7789998987
No 10
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=22.87 E-value=1.2e+02 Score=26.23 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHhhcCCCCceEEeecccccccccCCCCCCCCCCHHHHHHHhhhccC---CCceEEEecCC
Q 008784 398 SRRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKIE---NGRNVYIATNE 465 (553)
Q Consensus 398 skrLmdiv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I~---~GR~LYIATnE 465 (553)
|..|.+.|+.|.+. . .+.++-+- .|.+||++++++++.|. .|.-|.|-||=
T Consensus 17 A~~l~~~a~~i~G~-~-~~~aid~~---------------~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm 70 (130)
T 3gx1_A 17 ATSMVETVQELLSI-E-SGIALDMP---------------LTVEVKAMYEKLKQTVVKLNPVKGVLILSDM 70 (130)
T ss_dssp HHHHHHHHHHHHTC-C-CCEEEEEC---------------TTSCHHHHHHHHHHHHHTSCCTTCEEEEECS
T ss_pred HHHHHHHHHHHcCc-c-CEEEEEec---------------CCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 67889999999987 3 67776443 35789999999888774 57788888886
Done!