Query 008784
Match_columns 553
No_of_seqs 65 out of 67
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 11:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008784.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008784hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzha1 c.66.1.53 (A:8-211) tR 57.6 4.3 0.00031 35.3 4.2 64 443-509 126-197 (204)
2 d2fcaa1 c.66.1.53 (A:10-213) t 24.6 19 0.0014 31.1 2.7 26 443-468 124-149 (204)
3 d1gxha_ a.28.2.1 (A:) ImmE8 (I 23.1 20 0.0014 28.6 2.3 31 420-454 45-75 (85)
4 d1pdoa_ c.54.1.1 (A:) IIA doma 23.0 48 0.0035 26.3 4.8 56 397-468 12-70 (129)
5 d2vlqa1 a.28.2.1 (A:4-84) ImmE 21.1 25 0.0018 27.8 2.5 31 420-454 43-73 (81)
6 d1ayia_ a.28.2.1 (A:) ImmE7 pr 21.1 24 0.0018 28.1 2.5 30 420-453 47-76 (86)
7 d1a8ya1 c.47.1.3 (A:3-126) Cal 16.6 18 0.0013 28.0 0.7 32 123-157 71-103 (124)
8 d1jiha1 d.240.1.1 (A:390-509) 13.6 35 0.0025 27.3 1.7 55 399-453 25-92 (120)
9 d2f2ha4 c.1.8.13 (A:248-585) P 13.2 1.3E+02 0.0094 26.5 5.7 46 400-452 38-91 (338)
10 d1pd6a_ b.1.1.4 (A:) Cardiac m 12.9 53 0.0039 23.8 2.5 28 171-198 48-76 (94)
No 1
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=57.61 E-value=4.3 Score=35.32 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=38.4
Q ss_pred HHHHHHhhhccCCCceEEEecCCCCcCCcccccc-------ceeeeeccchhhhhccC-chhhhhhhhccCCccc
Q 008784 443 DALISTLADKIENGRNVYIATNEPDTSFFNPLKD-------KYSTHFLDEYKDLWDEN-SEWYSETMKLNKGAAV 509 (553)
Q Consensus 443 E~i~~~i~~~I~~GR~LYIATnE~~~~FFdpLk~-------kY~v~fLdDFk~Lw~~~-sewy~Et~~Ln~G~PV 509 (553)
.++++.+...+.||..|||+||-.+ ||+-..+ .......+.+..-+... .-+| |.+-+..|+||
T Consensus 126 ~~~l~~~~~~LkpgG~l~i~TD~~~--Y~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~T~y-E~k~~~~G~~I 197 (204)
T d1yzha1 126 KTFLDTFKRILPENGEIHFKTDNRG--LFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEY-EQKFSNKGQVI 197 (204)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHH-HHHTGGGCCCC
T ss_pred HHHHHHHHHhCCCCcEEEEEECCcc--HHHHHHHHHHHCCcccccccccccccccCCCCCCHH-HHHHHHcCCCe
Confidence 6789999999999999999998544 3332111 11122223333222211 1233 67788888887
No 2
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=24.55 E-value=19 Score=31.05 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHHHHhhhccCCCceEEEecCCCCc
Q 008784 443 DALISTLADKIENGRNVYIATNEPDT 468 (553)
Q Consensus 443 E~i~~~i~~~I~~GR~LYIATnE~~~ 468 (553)
.++++.+...+.||..|+||||-..+
T Consensus 124 ~~~l~~~~r~LkpgG~l~i~TD~~~y 149 (204)
T d2fcaa1 124 SHFLKKYEEVMGKGGSIHFKTDNRGL 149 (204)
T ss_dssp HHHHHHHHHHHTTSCEEEEEESCHHH
T ss_pred HHHHHHHHHhCCCCcEEEEEECChHH
Confidence 46789999999999999999986543
No 3
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=23.07 E-value=20 Score=28.63 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=24.8
Q ss_pred EeecccccccccCCCCCCCCCCHHHHHHHhhhccC
Q 008784 420 HVERGEKARNKDLWPNLDADTSPDALISTLADKIE 454 (553)
Q Consensus 420 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I~ 454 (553)
|-...|+++ ||.=+++.|||.|++.|++|=.
T Consensus 45 HP~gsDLIf----YP~~~~edsPegIv~~IKeWRa 75 (85)
T d1gxha_ 45 HPSGSDLIY----YPEGNNDGSPEAVIKEIKEWRA 75 (85)
T ss_dssp CTTTTHHHH----SCCSSCSSCTHHHHHHHHHHHH
T ss_pred CCCCCceee----eCCCCCCCCHHHHHHHHHHHHH
Confidence 556666664 6778999999999999999853
No 4
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=23.01 E-value=48 Score=26.33 Aligned_cols=56 Identities=9% Similarity=0.195 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHhhcCCCCceEEeecccccccccCCCCCCCCCCHHHHHHHhhhcc---CCCceEEEecCCCCc
Q 008784 397 KSRRLLDIVSAIASRLNWDYDAVHVERGEKARNKDLWPNLDADTSPDALISTLADKI---ENGRNVYIATNEPDT 468 (553)
Q Consensus 397 ~skrLmdiv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I---~~GR~LYIATnE~~~ 468 (553)
-|+-|.+.|+-|.+... ++.++... .|.+++++.+++++.+ .++..+.|-||=..=
T Consensus 12 ~A~gl~~s~~~i~G~~~-~i~~i~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~vliltDl~GG 70 (129)
T d1pdoa_ 12 AAEQLLKTAEMLLGEQE-NVGWIDFV---------------PGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGG 70 (129)
T ss_dssp HHHHHHHHHHHHHCCCS-SEEEECBC---------------TTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTS
T ss_pred HHHHHHHHHHHHhCCCC-CeEEEEcc---------------CCCCHHHHHHHHHHHHHhcCCCCCEEEEEecccc
Confidence 36778888999887543 44444433 4577899999988777 467789998886433
No 5
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=21.08 E-value=25 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=24.7
Q ss_pred EeecccccccccCCCCCCCCCCHHHHHHHhhhccC
Q 008784 420 HVERGEKARNKDLWPNLDADTSPDALISTLADKIE 454 (553)
Q Consensus 420 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I~ 454 (553)
|-...|.++ ||.=+++-|||-|++.|++|=.
T Consensus 43 HP~gsDLIf----YP~~~~edsPegIv~~IK~WRa 73 (81)
T d2vlqa1 43 HPSGSDLIY----YPKEGDDDSPSGIVNTVKQWRA 73 (81)
T ss_dssp CTTTTHHHH----SCCTTCCCSHHHHHHHHHHHHH
T ss_pred CCCCCceee----eCCCCCcCCHHHHHHHHHHHHH
Confidence 555667764 6677899999999999999853
No 6
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=21.06 E-value=24 Score=28.14 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=24.8
Q ss_pred EeecccccccccCCCCCCCCCCHHHHHHHhhhcc
Q 008784 420 HVERGEKARNKDLWPNLDADTSPDALISTLADKI 453 (553)
Q Consensus 420 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~I 453 (553)
|-...|.++ ||.=++|-|||-|++.|++|=
T Consensus 47 HP~gsDLIy----YP~~~~edsPegI~k~IKeWR 76 (86)
T d1ayia_ 47 HPDGTDLIY----YPSDNRDDSPEGIVKEIKEWR 76 (86)
T ss_dssp CTTTTHHHH----SCCTTSCCSHHHHHHHHHHHH
T ss_pred CCCCCceee----eCCCCCCCCHHHHHHHHHHHH
Confidence 666677774 677799999999999999985
No 7
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=16.58 E-value=18 Score=28.00 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=25.9
Q ss_pred CcccCC-CHHHHHHHHHHHhhhccccceeeeccccc
Q 008784 123 SPIDCT-DPEVFHLLMSKAIDQFKDIHFYRFGKAVR 157 (553)
Q Consensus 123 ~p~dC~-Dp~v~~~~~r~~~~~F~~i~f~~fg~PV~ 157 (553)
+-|||. +++ +.++++|+.||.|.||+=|.|+.
T Consensus 71 a~Vd~~~~~~---l~~~~~I~~yPTi~~f~~g~~~~ 103 (124)
T d1a8ya1 71 GLVDSEKDAA---VAKKLGLTEEDSIYVFKEDEVIE 103 (124)
T ss_dssp EEEETTTSHH---HHHTTTCCSTTCEEEEESSSEEE
T ss_pred EEEEeecccc---hhhccccccCCcEEEeccCccEE
Confidence 457777 444 57899999999999999888874
No 8
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.64 E-value=35 Score=27.32 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhhcCCCCc-----------eEEeeccccccc-cc-CCCCCCCCCCHHHHHHHhhhcc
Q 008784 399 RRLLDIVSAIASRLNWDYD-----------AVHVERGEKARN-KD-LWPNLDADTSPDALISTLADKI 453 (553)
Q Consensus 399 krLmdiv~~I~~rm~~DfD-----------avHVrRGDk~~n-k~-l~P~LD~DtspE~i~~~i~~~I 453 (553)
.-|...+.+|.+|+.-+-+ ++|+|-++++.. |+ -.|.-+.+...++|++..++.+
T Consensus 25 ~WL~~la~el~~RL~~~~~~~~~~~~~kTltl~~r~~~~~~~SRs~~i~~~~~~~~~~~i~~~a~~LL 92 (120)
T d1jiha1 25 SWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGIKFV 92 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECTTCCEEEEEEECCCSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccEEEEEEEeCCCCEecceeecCCCcccccHHHHHHHHHHHH
Confidence 5688899999999984333 799999887633 32 2465566777888887766555
No 9
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}
Probab=13.21 E-value=1.3e+02 Score=26.54 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhhcCCCCceEEee--------cccccccccCCCCCCCCCCHHHHHHHhhhc
Q 008784 400 RLLDIVSAIASRLNWDYDAVHVE--------RGEKARNKDLWPNLDADTSPDALISTLADK 452 (553)
Q Consensus 400 rLmdiv~~I~~rm~~DfDavHVr--------RGDk~~nk~l~P~LD~DtspE~i~~~i~~~ 452 (553)
.++++|+.+.+ .+=-.|++++. .|++..+++.||+ |.++++.+++.
T Consensus 38 ~v~~~~~~~r~-~~iP~d~i~iD~~w~~~~~~~~f~~d~~~FPd------p~~~i~~l~~~ 91 (338)
T d2f2ha4 38 TVNSFIDGMAE-RNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPD------PEGMIRRLKAK 91 (338)
T ss_dssp HHHHHHHHHHH-TTCCCCEEEECGGGBCTTCCSSCCBCTTTCSC------HHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCCcceEEEcCchhcCCCcCceeeCcccCCC------HHHHHHHHHHC
Confidence 47888888886 56678999994 4677778889994 88999999884
No 10
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.94 E-value=53 Score=23.77 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=19.9
Q ss_pred ccceeEEEeeCC-CceEEEeeecccccCc
Q 008784 171 KDYRRFTITRSA-NCTLSVVSIGDYHSGV 198 (553)
Q Consensus 171 kDyRRf~~~~~~-~C~~~V~~ig~~hSG~ 198 (553)
.+-+|+.+..+. .+.|.|.++..-|+|.
T Consensus 48 ~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 76 (94)
T d1pd6a_ 48 MSGSKYIFESIGAKRTLTISQCSLADDAA 76 (94)
T ss_dssp CCSSSSEEEEETTEEEEEECSCSSSSCEE
T ss_pred eeeeeEeeeccCCeEEeecCCCCceecEE
Confidence 344566666555 7788888888888875
Done!