Query 008787
Match_columns 553
No_of_seqs 193 out of 2052
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 11:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 9.1E-69 3.1E-73 568.3 43.9 450 32-552 9-474 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1E-68 3.5E-73 566.2 43.5 458 20-552 4-469 (536)
3 1v25_A Long-chain-fatty-acid-C 100.0 6.9E-68 2.4E-72 560.2 44.4 439 41-552 17-470 (541)
4 3rix_A Luciferase, luciferin 4 100.0 3.7E-68 1.3E-72 563.7 40.2 453 35-552 13-474 (550)
5 3etc_A AMP-binding protein; ad 100.0 4E-67 1.4E-71 557.6 44.9 443 39-552 53-510 (580)
6 3o83_A Peptide arylation enzym 100.0 1.2E-67 4E-72 558.8 40.4 437 41-552 29-474 (544)
7 3r44_A Fatty acyl COA syntheta 100.0 2.9E-67 1E-71 552.3 41.7 434 39-552 13-448 (517)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.3E-67 7.9E-72 555.9 38.5 433 41-552 24-465 (539)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.1E-66 7.2E-71 544.6 42.5 426 41-552 1-437 (504)
10 2d1s_A Luciferase, luciferin 4 100.0 2.5E-66 8.6E-71 548.8 42.8 442 41-552 24-476 (548)
11 4fuq_A Malonyl COA synthetase; 100.0 1.5E-66 5.2E-71 545.0 37.4 428 46-552 4-434 (503)
12 3c5e_A Acyl-coenzyme A synthet 100.0 3.1E-65 1.1E-69 542.3 44.5 440 39-552 35-491 (570)
13 3ivr_A Putative long-chain-fat 100.0 7.2E-66 2.5E-70 541.5 38.8 428 40-552 4-435 (509)
14 4gr5_A Non-ribosomal peptide s 100.0 7.6E-66 2.6E-70 548.0 37.8 417 39-552 72-504 (570)
15 1pg4_A Acetyl-COA synthetase; 100.0 1.9E-65 6.4E-70 552.2 41.1 453 40-552 74-552 (652)
16 2v7b_A Benzoate-coenzyme A lig 100.0 7E-65 2.4E-69 536.5 41.2 437 39-550 21-462 (529)
17 1ry2_A Acetyl-coenzyme A synth 100.0 3.8E-65 1.3E-69 549.9 39.4 453 40-552 80-561 (663)
18 4dg8_A PA1221; ANL superfamily 100.0 1.8E-64 6E-69 540.1 42.6 414 41-552 26-454 (620)
19 1amu_A GRSA, gramicidin synthe 100.0 3.2E-64 1.1E-68 533.8 39.6 415 41-552 38-465 (563)
20 3e7w_A D-alanine--poly(phospho 100.0 2.3E-64 7.8E-69 530.1 38.1 419 42-552 1-433 (511)
21 3tsy_A Fusion protein 4-coumar 100.0 1.6E-64 5.6E-69 570.0 39.2 474 10-552 33-516 (979)
22 3fce_A D-alanine--poly(phospho 100.0 9.6E-65 3.3E-69 533.3 34.3 420 42-552 1-434 (512)
23 3rg2_A Enterobactin synthase c 100.0 4.9E-64 1.7E-68 538.8 39.9 435 41-552 26-469 (617)
24 3l8c_A D-alanine--poly(phospho 100.0 5.6E-64 1.9E-68 528.9 36.8 421 41-552 3-438 (521)
25 3ipl_A 2-succinylbenzoate--COA 100.0 2.4E-64 8.2E-69 529.0 33.6 429 43-552 2-433 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 6.6E-64 2.2E-68 525.0 31.7 417 39-552 19-441 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 2.3E-63 8E-68 532.5 34.6 435 40-552 9-496 (590)
28 3gqw_A Fatty acid AMP ligase; 100.0 2.1E-62 7.1E-67 523.9 39.4 440 31-551 10-495 (576)
29 3ite_A SIDN siderophore synthe 100.0 5.6E-63 1.9E-67 525.9 34.2 435 39-552 17-463 (562)
30 2vsq_A Surfactin synthetase su 100.0 3.8E-59 1.3E-63 539.1 44.6 419 41-552 463-896 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 3E-58 1E-62 480.7 30.7 401 40-514 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 6.6E-41 2.3E-45 334.1 17.5 247 219-549 36-285 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.6E-40 1.2E-44 339.2 21.3 273 216-552 81-366 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 1.6E-39 5.4E-44 334.5 23.0 274 215-551 85-367 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 3.2E-39 1.1E-43 332.8 23.9 273 216-551 88-369 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 3.3E-28 1.1E-32 244.3 18.7 237 217-521 88-365 (369)
37 4eql_A 4-substituted benzoates 98.8 2.3E-08 7.9E-13 103.0 12.0 134 383-539 297-447 (581)
38 4b2g_A GH3-1 auxin conjugating 98.7 2.8E-07 9.7E-12 95.1 16.2 132 383-537 302-457 (609)
39 4epl_A Jasmonic acid-amido syn 98.5 9.1E-07 3.1E-11 91.0 14.0 137 380-538 299-453 (581)
40 3lax_A Phenylacetate-coenzyme 98.2 5.3E-07 1.8E-11 72.2 3.5 39 513-552 1-39 (109)
41 3gxs_A Phenylacetate-coenzyme 98.1 1.6E-06 5.5E-11 69.3 3.5 38 513-551 1-38 (109)
42 3qov_A Phenylacetate-coenzyme 93.1 0.93 3.2E-05 45.3 13.1 114 68-182 95-217 (436)
43 2y27_A Phenylacetate-coenzyme 93.0 1.2 4.1E-05 44.5 13.6 124 56-182 89-221 (437)
44 2y4o_A Phenylacetate-coenzyme 93.0 1.2 4E-05 44.6 13.6 123 56-182 91-223 (443)
45 3ipl_A 2-succinylbenzoate--COA 88.0 7 0.00024 39.6 14.1 122 55-182 161-285 (501)
46 3hgu_A EHPF; phenazine, antibi 87.2 3.1 0.00011 40.3 10.5 123 56-182 90-242 (369)
47 1mdb_A 2,3-dihydroxybenzoate-A 82.9 17 0.00059 37.1 14.2 122 55-182 180-309 (539)
48 4gs5_A Acyl-COA synthetase (AM 82.3 6.2 0.00021 38.0 10.0 131 41-182 24-159 (358)
49 3o83_A Peptide arylation enzym 80.2 17 0.00056 37.3 12.9 121 56-182 190-318 (544)
50 2d1s_A Luciferase, luciferin 4 78.8 12 0.00042 38.3 11.3 122 57-182 192-320 (548)
51 4dg8_A PA1221; ANL superfamily 76.2 16 0.00056 38.1 11.5 122 56-183 163-288 (620)
52 3r44_A Fatty acyl COA syntheta 75.9 27 0.00093 35.3 12.9 120 56-182 169-295 (517)
53 4gr5_A Non-ribosomal peptide s 73.4 14 0.00047 38.1 10.0 123 55-183 212-338 (570)
54 1t5h_X 4-chlorobenzoyl COA lig 73.0 17 0.00059 36.7 10.5 122 55-182 151-283 (504)
55 3rg2_A Enterobactin synthase c 72.3 42 0.0014 34.8 13.5 122 56-183 183-314 (617)
56 3kxw_A Saframycin MX1 syntheta 72.0 24 0.00082 36.4 11.5 123 55-182 165-300 (590)
57 3e7w_A D-alanine--poly(phospho 71.7 26 0.00091 35.3 11.6 122 56-182 142-271 (511)
58 3rix_A Luciferase, luciferin 4 70.6 24 0.00081 36.1 11.0 123 57-182 190-318 (550)
59 3fce_A D-alanine--poly(phospho 70.3 22 0.00076 35.9 10.6 122 56-182 143-272 (512)
60 1v25_A Long-chain-fatty-acid-C 67.2 21 0.00073 36.4 9.7 123 56-182 175-304 (541)
61 3ivr_A Putative long-chain-fat 66.8 69 0.0024 32.1 13.5 121 55-181 158-282 (509)
62 3c5e_A Acyl-coenzyme A synthet 64.3 35 0.0012 35.1 10.7 122 56-182 205-333 (570)
63 3g7s_A Long-chain-fatty-acid-- 63.9 67 0.0023 32.7 12.8 107 218-328 32-140 (549)
64 1pg4_A Acetyl-COA synthetase; 62.5 40 0.0014 35.3 11.0 124 56-183 255-390 (652)
65 3ni2_A 4-coumarate:COA ligase; 61.7 48 0.0016 33.6 11.2 101 218-328 35-137 (536)
66 1ry2_A Acetyl-coenzyme A synth 58.1 57 0.002 34.2 11.2 123 56-182 261-395 (663)
67 3etc_A AMP-binding protein; ad 57.4 42 0.0014 34.6 9.8 122 56-182 224-352 (580)
68 3tbh_A O-acetyl serine sulfhyd 56.7 42 0.0014 31.8 9.0 66 92-157 61-127 (334)
69 3nyq_A Malonyl-COA ligase; A/B 56.1 56 0.0019 32.8 10.4 103 55-164 153-259 (505)
70 3t5a_A Long-chain-fatty-acid-- 54.5 1.1E+02 0.0036 30.3 12.1 107 218-328 37-148 (480)
71 3ite_A SIDN siderophore synthe 53.5 76 0.0026 32.3 11.0 114 68-182 184-305 (562)
72 2vsq_A Surfactin synthetase su 51.9 38 0.0013 39.0 9.1 123 55-183 605-732 (1304)
73 1amu_A GRSA, gramicidin synthe 50.6 1.1E+02 0.0036 31.3 11.5 84 238-324 63-148 (563)
74 4h1h_A LMO1638 protein; MCCF-l 47.0 52 0.0018 31.0 7.8 61 97-157 8-87 (327)
75 3l8c_A D-alanine--poly(phospho 46.9 1.4E+02 0.0049 29.8 11.8 124 56-182 144-275 (521)
76 2v7b_A Benzoate-coenzyme A lig 45.7 71 0.0024 32.2 9.3 87 238-327 47-135 (529)
77 3vc3_A Beta-cyanoalnine syntha 45.0 87 0.003 29.7 9.1 64 94-157 78-142 (344)
78 3sr3_A Microcin immunity prote 43.6 66 0.0023 30.4 7.9 61 97-157 9-88 (336)
79 4fuq_A Malonyl COA synthetase; 42.5 72 0.0025 32.0 8.7 85 239-326 28-114 (503)
80 3tla_A MCCF; serine protease, 42.2 69 0.0023 30.8 7.8 61 97-157 39-118 (371)
81 4e5s_A MCCFLIKE protein (BA_56 39.8 75 0.0026 30.0 7.6 61 97-157 8-87 (331)
82 3tsy_A Fusion protein 4-coumar 39.1 67 0.0023 35.5 8.3 99 218-326 74-174 (979)
83 3ezx_A MMCP 1, monomethylamine 38.6 1.2E+02 0.004 26.5 8.2 77 277-403 105-195 (215)
84 4eez_A Alcohol dehydrogenase 1 38.5 1.4E+02 0.0048 27.9 9.6 77 76-155 136-215 (348)
85 1z7w_A Cysteine synthase; tran 35.2 1.5E+02 0.0051 27.6 9.0 64 94-157 58-122 (322)
86 4aec_A Cysteine synthase, mito 34.2 1.5E+02 0.0051 29.1 9.0 63 94-156 166-229 (430)
87 2q3b_A Cysteine synthase A; py 32.4 1.9E+02 0.0065 26.7 9.2 64 93-157 58-122 (313)
88 2egu_A Cysteine synthase; O-ac 31.0 2.1E+02 0.007 26.4 9.2 64 93-157 56-120 (308)
89 2jtq_A Phage shock protein E; 29.8 1.3E+02 0.0043 21.2 6.0 46 75-127 22-67 (85)
90 1ofu_X SULA, hypothetical prot 29.1 1.8E+02 0.0063 22.5 7.0 54 89-142 46-101 (119)
91 3ju7_A Putative PLP-dependent 29.1 1.3E+02 0.0044 28.8 7.6 61 90-153 67-134 (377)
92 3goh_A Alcohol dehydrogenase, 28.6 1.6E+02 0.0056 27.1 8.1 73 76-153 115-190 (315)
93 3gqw_A Fatty acid AMP ligase; 27.8 2.5E+02 0.0087 28.3 10.1 86 238-326 48-142 (576)
94 2pqm_A Cysteine synthase; OASS 27.7 2.1E+02 0.0071 26.9 8.6 64 93-157 69-133 (343)
95 1ve1_A O-acetylserine sulfhydr 27.4 2.6E+02 0.0089 25.6 9.2 64 93-157 51-117 (304)
96 3pc3_A CG1753, isoform A; CBS, 26.9 2.1E+02 0.0071 28.9 9.0 62 94-156 105-167 (527)
97 3tqh_A Quinone oxidoreductase; 26.7 1.5E+02 0.0052 27.4 7.5 75 76-155 125-203 (321)
98 3two_A Mannitol dehydrogenase; 26.3 1.7E+02 0.0058 27.4 7.8 73 77-153 150-225 (348)
99 2v03_A Cysteine synthase B; py 26.2 2.8E+02 0.0097 25.3 9.2 62 94-156 53-115 (303)
100 2cf5_A Atccad5, CAD, cinnamyl 25.6 1.6E+02 0.0054 27.8 7.5 78 76-156 152-233 (357)
101 3ijw_A Aminoglycoside N3-acety 25.4 51 0.0018 30.0 3.6 24 87-110 18-41 (268)
102 1h2b_A Alcohol dehydrogenase; 25.2 2.2E+02 0.0075 26.8 8.4 63 91-156 175-239 (359)
103 3s2e_A Zinc-containing alcohol 25.0 2E+02 0.0069 26.8 8.1 77 76-156 139-218 (340)
104 1zl0_A Hypothetical protein PA 24.0 2E+02 0.0067 26.8 7.4 61 97-157 13-89 (311)
105 2nyg_A YOKD protein; PFAM02522 23.8 57 0.0019 29.8 3.6 22 88-109 17-38 (273)
106 3sma_A FRBF; N-acetyl transfer 23.8 57 0.002 29.9 3.6 28 75-109 20-47 (286)
107 3dwg_A Cysteine synthase B; su 23.6 2.8E+02 0.0095 25.8 8.6 64 93-157 64-128 (325)
108 1oft_A SULA, hypothetical prot 23.0 2E+02 0.007 23.7 6.5 52 90-141 89-142 (161)
109 3ri6_A O-acetylhomoserine sulf 22.6 2.8E+02 0.0096 27.0 8.8 62 105-166 100-164 (430)
110 2ayi_A Aminopeptidase T; metal 22.5 1.3E+02 0.0045 29.2 6.1 51 82-132 4-58 (408)
111 3jv7_A ADH-A; dehydrogenase, n 22.3 2.4E+02 0.0083 26.3 8.1 78 77-157 143-225 (345)
112 1eg5_A Aminotransferase; PLP-d 22.2 2.8E+02 0.0097 25.8 8.7 9 100-108 88-96 (384)
113 3dzz_A Putative pyridoxal 5'-p 22.2 2.7E+02 0.0092 26.1 8.5 51 99-152 107-164 (391)
114 1yqd_A Sinapyl alcohol dehydro 21.9 2.7E+02 0.0094 26.2 8.4 63 91-156 177-240 (366)
115 1y80_A Predicted cobalamin bin 21.9 2.9E+02 0.0099 23.6 7.8 57 101-157 88-148 (210)
116 1zsy_A Mitochondrial 2-enoyl t 21.8 2.3E+02 0.0077 26.7 7.8 78 77-155 140-223 (357)
117 1o69_A Aminotransferase; struc 21.0 2.7E+02 0.0092 26.4 8.2 57 96-155 67-129 (394)
118 3ist_A Glutamate racemase; str 20.6 3.1E+02 0.011 24.7 7.9 62 47-115 20-81 (269)
119 2e7j_A SEP-tRNA:Cys-tRNA synth 20.5 3.9E+02 0.013 24.7 9.2 45 98-145 90-140 (371)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=9.1e-69 Score=568.25 Aligned_cols=450 Identities=22% Similarity=0.259 Sum_probs=367.8
Q ss_pred CCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCC--CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 008787 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (553)
Q Consensus 32 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~--~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~ 109 (553)
.++|..+.+..++.++|.++++++|+++|+++. +. ..+..+++||+||.++++++|+.|+++|+++||+|+++++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 345555556789999999999999999999987 42 1334468999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHH
Q 008787 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (553)
Q Consensus 110 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (553)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+...... .....++..+..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence 99999999999999999999999999999999999999999999998876665443322 124455554432
Q ss_pred HhhCCceeeeHHHHHhcccccccccCCCC-CCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcE
Q 008787 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV 268 (553)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~ 268 (553)
..++.++....... ....... ++++++|+|||||||.||+|++||+++.+.+......+ ++..+|+
T Consensus 157 -------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~ 223 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSED-FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDT 223 (549)
T ss_dssp -------SSCHHHHHHHSCSC-CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCE
T ss_pred -------CcCHHHHHhcCccc-cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCE
Confidence 23566666544322 1222333 48999999999999999999999999999988877766 7889999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008787 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (553)
Q Consensus 269 ~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (553)
+++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++........
T Consensus 224 ~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------- 292 (549)
T 3g7s_A 224 IVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT----------- 292 (549)
T ss_dssp EECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-----------
T ss_pred EEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-----------
Confidence 9999999999998887778999999998876 9999999999999999999999999987643221000
Q ss_pred HHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh----cC---CceEeeeccccC
Q 008787 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTET 420 (553)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~i~~~YG~tE~ 420 (553)
. ..+++|.+++||+++++++.+++.+. ++ +.+++.||+||+
T Consensus 293 ------------------------~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 340 (549)
T 3g7s_A 293 ------------------------Y--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA 340 (549)
T ss_dssp ------------------------C--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGG
T ss_pred ------------------------C--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecccc
Confidence 0 11489999999999999999999887 66 889999999999
Q ss_pred CCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc---cCC--cc
Q 008787 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WF 495 (553)
Q Consensus 421 g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~---~~g--~~ 495 (553)
+.+++...........++|+|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++|+.+++.| .+| ||
T Consensus 341 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~ 418 (549)
T 3g7s_A 341 CPMVTTNPPLRLDKSTTQGVPMSDIELKVIS-LEDG-RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418 (549)
T ss_dssp SSEEEECCGGGGGGTTSCCEECTTCEEEEEC-SSSC-CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEE
T ss_pred chhhhcCCccccCcCCCccccCCCCEEEEEe-CCCC-cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceE
Confidence 9888776655545558899999999999999 3333 456678999999999999999999999999998 678 99
Q ss_pred ccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 496 ~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|||+|++|+||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 419 ~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 474 (549)
T 3g7s_A 419 RTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPD 474 (549)
T ss_dssp EEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC
T ss_pred ccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEc
Confidence 99999999999999999999999997 899999999999999999999999999875
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1e-68 Score=566.20 Aligned_cols=458 Identities=26% Similarity=0.335 Sum_probs=379.2
Q ss_pred CCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCC
Q 008787 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (553)
Q Consensus 20 ~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~ 99 (553)
.+..+|++......+|. ..++.++|.++++++|+++|+++. ++ + +++||+||.++++++|++|+++|++
T Consensus 4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 44567777766555553 578999999999999999999864 22 2 5899999999999999999999999
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEe
Q 008787 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF 179 (553)
Q Consensus 100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (553)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+....... .. .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence 9999999999999999999999999999999999999999999999999999999988766554433211 12 34444
Q ss_pred cCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccc
Q 008787 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259 (553)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~ 259 (553)
+... .....+.++..... ...+.....++++++|+|||||||.||+|++||+++++.+........ .
T Consensus 150 ~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~ 216 (536)
T 3ni2_A 150 DSAP-----------DGCLHFSELTQADE-NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-P 216 (536)
T ss_dssp SCCC-----------TTCEETHHHHTSCG-GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-C
T ss_pred cCCC-----------CCccCHHHHhhccc-cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-c
Confidence 4321 13456666665442 223344567899999999999999999999999999887765433211 0
Q ss_pred cCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhh
Q 008787 260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (553)
Q Consensus 260 ~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~ 337 (553)
...+..++++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|++..
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------- 289 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------- 289 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence 125678899999999999999865 6678999999999876 9999999999999999999999999886411
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeec
Q 008787 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG 416 (553)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG 416 (553)
..+..+ +++||.+++||+++++++.+++++.+ ++++++.||
T Consensus 290 ------------------------------~~~~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 290 ------------------------------DLDKHD--------LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp ------------------------------CGGGSC--------CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred ------------------------------ccccCC--------CccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 111111 24899999999999999999999998 899999999
Q ss_pred cccCCCceeecc----CCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c
Q 008787 417 LTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491 (553)
Q Consensus 417 ~tE~g~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~ 491 (553)
+||++.+++.+. .......+++|+|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+++|+.+.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 999998766542 12233457899999999999999 4433 556678999999999999999999999999999 7
Q ss_pred CCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 492 ~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|||+|||+|++|+||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 410 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKD 469 (536)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred CCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeec
Confidence 999999999999999999999999999998 899999999999999999999999999754
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=6.9e-68 Score=560.17 Aligned_cols=439 Identities=25% Similarity=0.318 Sum_probs=356.8
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
..++.++|.++++++|+++|+++. ++ +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 22 2347899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (553)
|+++|++++|+++.++.+++.++++.++++++|++......+.... ...+....++.++.... ....++
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence 9999999999999999999999999999999999987765543322 22334455665554311 023456
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhc--hhhhccccCCCCCCcEEEEecChHHH
Q 008787 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI 278 (553)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~ 278 (553)
.+++..... .....++++++|+|||||||.||+|++||+++....... ...+ ++..+|++++.+|++|.
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV 231 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence 665433211 134567899999999999999999999999998766542 2222 57789999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (553)
Q Consensus 279 ~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (553)
+++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..|++......
T Consensus 232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 289 (541)
T 1v25_A 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------- 289 (541)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence 998767778999999999864 89999999999999999999999999876433211
Q ss_pred hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-----
Q 008787 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (553)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~----- 431 (553)
..++++|.+++||+++++++.+++ +.+|+++++.||+||++.+++......
T Consensus 290 -----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 345 (541)
T 1v25_A 290 -----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 345 (541)
T ss_dssp -----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence 011489999999999999999999 557999999999999998777654321
Q ss_pred -----ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEcc
Q 008787 432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (553)
Q Consensus 432 -----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~ 505 (553)
.....++|+|+|+++++|+| +++...+.+.++.|||+|+||.++.||+++|+.+++.| .+|||+|||+|++|+
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~ 424 (541)
T 1v25_A 346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424 (541)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence 12347899999999999999 66655554445789999999999999999999999999 499999999999999
Q ss_pred CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 470 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPH 470 (541)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEEC
T ss_pred CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecC
Confidence 9999999999999996 899999999999999999999999999865
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.7e-68 Score=563.69 Aligned_cols=453 Identities=25% Similarity=0.307 Sum_probs=332.7
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 008787 35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (553)
Q Consensus 35 ~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~ 114 (553)
|..+....|+.++|.++++++|+++|++... ++..+ +++||+||.++++++|++|+++|+++||+|+++++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4444556899999999999999999986320 22122 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCC
Q 008787 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (553)
Q Consensus 115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (553)
++++|||+++|++++|+++.++.+++.++++.++++++|++......+..... ..+....++.++.... .
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~ 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTD---------Y 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSC---------B
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCcc---------c
Confidence 99999999999999999999999999999999999999999987766544332 3344556666554321 1
Q ss_pred ceeeeHHHHHhcccccc------cccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcE
Q 008787 195 IKPYSWDEFLHLGKVNE------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV 268 (553)
Q Consensus 195 ~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~ 268 (553)
....++.++........ .+.....++++++|+|||||||.||+|++||+++...+......+ ...++..+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 12345555554322211 111222457899999999999999999999999988876654431 1125678899
Q ss_pred EEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008787 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (553)
Q Consensus 269 ~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (553)
+++.+|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++..
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------- 299 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST----------------- 299 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----------------
Confidence 9999999999999877888999999999876 9999999999999999999999999886421
Q ss_pred HHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCc-eEeeeccccCCCceee
Q 008787 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTV 426 (553)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-i~~~YG~tE~g~~~~~ 426 (553)
..+..++ ++||.+++||+++++++.+++.+.++.. +++.||+||++..++.
T Consensus 300 --------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 300 --------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp --------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred --------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 1111112 4899999999999999999999999875 9999999999987776
Q ss_pred ccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEcc
Q 008787 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (553)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~ 505 (553)
..... ...+++|+|+|+++++|+| ++++ .+++.|+.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++|+
T Consensus 352 ~~~~~-~~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGD-DKPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTC-CCTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCC-CCCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 65543 3448999999999999999 4433 556678999999999999999999999999999 899999999999999
Q ss_pred CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
||+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 429 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 474 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPD 474 (550)
T ss_dssp TCCEEEC----------------------------------------
T ss_pred CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeec
Confidence 9999999999999997 899999999999999999999999999875
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4e-67 Score=557.59 Aligned_cols=443 Identities=17% Similarity=0.162 Sum_probs=368.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (553)
Q Consensus 39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (553)
..++.+.++|+++|+++|+++|+++. +. .+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45667779999999999999999986 33 344579999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhh--hhhhccccccccCc-cEEEEecCCchHHHHHHhhCCc
Q 008787 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI 195 (553)
Q Consensus 119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (553)
|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.+... ..+.. ..++.++... ..
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDV----------LE 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSC----------CT
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcc----------cc
Confidence 99999999999999999999999999999999999987653 33322221 22232 3444444321 12
Q ss_pred eeeeHHHHHhccccccccc---CCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEe
Q 008787 196 KPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272 (553)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (553)
+..++.+.+.......... ....++++++|+|||||||.||+|.++|.+++..+......+ ++..++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence 3556776665443221111 245789999999999999999999999999887776644433 67888999999
Q ss_pred cChHHHHHHHH-HHHHHHcCcEEEEec---CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008787 273 LPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (553)
Q Consensus 273 ~p~~~~~g~~~-~~~~l~~g~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (553)
.|+.|..++.. ++.++..|+++++.+ .++..+++.|+++++|+++++|+++..|.+..
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------ 334 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------ 334 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence 99999888775 566789999998874 28999999999999999999999999886410
Q ss_pred HHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeecc
Q 008787 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428 (553)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~ 428 (553)
... ..+++||.+++||+++++++.+++.+.+|+++++.||+||++..++...
T Consensus 335 --------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 335 --------------------LSH--------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp --------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred --------------------ccc--------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 011 1124899999999999999999999989999999999999987666544
Q ss_pred CCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec-----CCccccccCChhhhhhhccCCccccCceEEE
Q 008787 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (553)
Q Consensus 429 ~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~ 503 (553)
.. ....+++|+|+|+++++|+| +++. +++.|+.|||+|+| +.++.||+++|+.+++.|.+|||+|||+|++
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~ 462 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM 462 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence 33 34458999999999999999 6554 55677999999997 7899999999999999999999999999999
Q ss_pred ccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 504 ~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
|+||+|+|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 463 d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~ 510 (580)
T 3etc_A 463 DEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPD 510 (580)
T ss_dssp CTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred CCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeec
Confidence 999999999999999997 799999999999999999999999999865
No 6
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.2e-67 Score=558.81 Aligned_cols=437 Identities=15% Similarity=0.168 Sum_probs=333.2
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
..++.++|.++++++|+++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh----hhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (553)
|+++|++++|+++.++.+++.+++++++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876431 111111222234445555544311
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (553)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 276 (553)
...+.++...............++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 223444444433222233456789999999999999999999999999999988877766 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (553)
Q Consensus 277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (553)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|++......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 303 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK------------------- 303 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence 9999874 6678999999999876 99999999999999999999999999876432111
Q ss_pred HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (553)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~ 433 (553)
.++ ++||.+++||+++++++.+++.+.+++++++.||+||++............
T Consensus 304 ------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 304 ------------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp ------------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ------------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 111 389999999999999999999999999999999999987554443333334
Q ss_pred ccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEE
Q 008787 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (553)
Q Consensus 434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~ 511 (553)
...++|+|+ ++.+++|+| +++. ++++|+.|||+|+||+++.||+++|+.+.+.| .+|||+|||+|++|+||+|++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 447899996 899999999 5554 55677999999999999999999999999999 799999999999999999999
Q ss_pred EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 474 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVD 474 (544)
T ss_dssp EEEEC------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccC
Confidence 9999999996 899999999999999999999999999865
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.9e-67 Score=552.32 Aligned_cols=434 Identities=23% Similarity=0.317 Sum_probs=360.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (553)
Q Consensus 39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (553)
+.+.|+.++|.++++++|+++|+++. +. .+++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 34789999999999999999999875 22 258999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (553)
Q Consensus 119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (553)
|||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++.... ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987665543322111 11111111110 01
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (553)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 278 (553)
.+.+.+... ....+.....++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++.+|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 233333322 122234456789999999999999999999999999999988877666 78899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008787 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (553)
Q Consensus 279 ~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (553)
+++...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+.....
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 279 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------ 279 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence 999876666569999998876 9999999999999999999999999886522111
Q ss_pred ccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-ccccC
Q 008787 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (553)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-~~~~~ 436 (553)
...++++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+
T Consensus 280 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 280 ---------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp ---------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred ---------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 1122489999999999999999999987 999999999999988776554332 34458
Q ss_pred ccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEeccc
Q 008787 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (553)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~ 516 (553)
++|+|.++.++++++ +++. +++.| .|||+|+|+.++.||+++|+.+.+.|.+|||+|||+|++|+||+|+++||.+
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~--~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 413 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGV--IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK 413 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSC--EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred CCCcCCCCeEEEEEC-CCCC--CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence 899999999999999 5543 33344 7999999999999999999999999999999999999999999999999999
Q ss_pred CceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 517 NLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 517 d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~ 448 (517)
T 3r44_A 414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPD 448 (517)
T ss_dssp GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccc
Confidence 99997 899999999999999999999999999764
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.3e-67 Score=555.94 Aligned_cols=433 Identities=19% Similarity=0.190 Sum_probs=357.6
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
..++.++|.++++++|+++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 2 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh----hhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (553)
|+++|++++|+++.++.+++.++++.++++++|+++.... ..........+....++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111111223344444433221
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (553)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 276 (553)
.+.++.... ..........++++++++|||||||.||+|++||+++.+.+......+ ++..++++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 111111111 111122345778999999999999999999999999999888776666 788899999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (553)
Q Consensus 277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (553)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 6778999999999876 99999999999999999999999999875322110
Q ss_pred HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (553)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~ 433 (553)
..+++||.+++||+++++++.+++++.+|+++++.||+||++............
T Consensus 295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 011489999999999999999999998999999999999965333222111123
Q ss_pred ccCccCCCCCC-eeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEE
Q 008787 434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (553)
Q Consensus 434 ~~~~~G~~~~~-~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~ 511 (553)
..+++|+|+++ .+++|+| +++ .+++.|+.|||+|+||+++.||+++|+.+++.| .+|||+|||+|++|+||+|++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCC--CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 5899999 554 455677999999999999999999999999999 799999999999999999999
Q ss_pred EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
.||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 465 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPD 465 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccc
Confidence 9999999996 899999999999999999999999999764
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.1e-66 Score=544.61 Aligned_cols=426 Identities=21% Similarity=0.258 Sum_probs=349.6
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
|+++.++|.++++++|+++|+++. +. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---AR--G--LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TT--T--EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CC--C--ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 21 1 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEE--cchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (553)
|+++|++++|+++.++.+++.+++++++++++++ +......+.... .... ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 665443331111 1111 11
Q ss_pred eHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCC--CCCcEEEEe
Q 008787 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (553)
Q Consensus 199 ~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 272 (553)
.+.++..... ..........++++++++|||||||.||+|++||+++.+.+......+ ++ ..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1222221110 111112345678999999999999999999999999998887765554 55 778999999
Q ss_pred cChHHHHHHH-HHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 008787 273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (553)
Q Consensus 273 ~p~~~~~g~~-~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (553)
+|++|.+|+. ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------- 266 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------- 266 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence 9999999985 46778999999999876 99999999999999999999999999875321000
Q ss_pred HHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCC
Q 008787 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~ 430 (553)
.. ..+++||.+++||+++++++.+.+++.++..+++.||+||++ .+....
T Consensus 267 -------------------~~--------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 267 -------------------SS--------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp -------------------CC--------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred -------------------cc--------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 00 011489999999999999999999999999999999999983 333222
Q ss_pred CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEe-cCCccccccCChhhhhhhccCCccccCceEEEccCCcE
Q 008787 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (553)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l 509 (553)
....+++|.|.++.++++++.+++...+++.|+.|||+|+ |+.++.||+++|+.+.+.|.+|||+|||+|++|+||+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1234789999999999999933322356677899999999 99999999999999999999999999999999999999
Q ss_pred EEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 437 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLAD 437 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeec
Confidence 999999999997 899999999999999999999999999865
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.5e-66 Score=548.81 Aligned_cols=442 Identities=26% Similarity=0.309 Sum_probs=361.2
Q ss_pred cccHHH-HHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787 41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (553)
Q Consensus 41 ~~~l~~-~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (553)
+.++.+ +|.++++++ +++|+++. +. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VT--G--VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CC--C--CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 468999 898999999 99999863 21 1 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (553)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (553)
||+++|++++|+++.++.+++.+++++++++++|++......+..... ..+....++.++.... .....+
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeCCccc---------cccccc
Confidence 999999999999999999999999999999999999887655433221 1122334555443210 001234
Q ss_pred HHHHHhcccccccccCCC------CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEec
Q 008787 200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (553)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (553)
|+++.........+.... .++++++++|||||||.||+|++||+++.+.+......+. ..++..+|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence 666654431110111111 2389999999999999999999999999988776654411 12567889999999
Q ss_pred ChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 008787 274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (553)
Q Consensus 274 p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (553)
|++|.+|+.. ++.++ .|+++++.+. +++.+++.|+++++|+++++|+++..|.+..
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------- 301 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE--------------------- 301 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS---------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc---------------------
Confidence 9999999876 44456 9999998876 9999999999999999999999999886410
Q ss_pred HHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCC
Q 008787 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD 430 (553)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~ 430 (553)
..+..+ ++++|.+++||+++++++.+++++.+ +..+++.||+||++..++.....
T Consensus 302 ----------------~~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 357 (548)
T 2d1s_A 302 ----------------LLNKYD--------LSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG 357 (548)
T ss_dssp ----------------CGGGSC--------CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred ----------------cccccc--------ccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence 011111 14899999999999999999999998 67899999999998877664333
Q ss_pred CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcE
Q 008787 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (553)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l 509 (553)
....+++|+|+|+++++|+| ++++ .+++.|+.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++|+||+|
T Consensus 358 -~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 434 (548)
T 2d1s_A 358 -DDKPGASGKVVPLFKAKVID-LDTK-KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434 (548)
T ss_dssp -CCCTTCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred -cCCCCCCCccCCCceEEEEe-CCcC-ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence 33457899999999999999 4333 455678999999999999999999999999999 7999999999999999999
Q ss_pred EEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 510 ~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus 435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~ 476 (548)
T 2d1s_A 435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPD 476 (548)
T ss_dssp EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEc
Confidence 999999999997 899999999999999999999999999864
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.5e-66 Score=544.97 Aligned_cols=428 Identities=23% Similarity=0.331 Sum_probs=353.1
Q ss_pred HHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 008787 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (553)
Q Consensus 46 ~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G 125 (553)
++|.+.++++|+++++... +.. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~-~--~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA-G--DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT-C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC-C--cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4688899999999999864 211 1 589999999999999999999999999999999999999999999999999
Q ss_pred CEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHh
Q 008787 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (553)
Q Consensus 126 ~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (553)
++++|+++.++.+++.+++++++++++|++......+....... . ..+..++.... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987655443222111 1 13333332211 11222111
Q ss_pred cccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-H
Q 008787 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (553)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~ 284 (553)
.. ..........++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122233355789999999999999999999999999999988877766 7889999999999999999764 6
Q ss_pred HHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcC
Q 008787 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (553)
Q Consensus 285 ~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (553)
+.+++.|+++++.+. +++.+++.++ ++|+++++|+++..|++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 678889999888876 9999999998 89999999999998864210
Q ss_pred CcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCC
Q 008787 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (553)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~ 443 (553)
... ...+++|.+++||+++++++.+.+.+.++.++++.||+||++..+.... ......+++|+|+|
T Consensus 262 -----~~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTK--------ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CST--------TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----ccc--------cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 000 1124899999999999999999999999999999999999987654332 33444578999999
Q ss_pred CeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecC
Q 008787 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (553)
Q Consensus 444 ~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~ 522 (553)
+++++|+| ++++ .+++.|+.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++|+||+|+++||.||+|++
T Consensus 328 ~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 99999999 4433 456678999999999999999999999999999 6999999999999999999999999999997
Q ss_pred CceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 523 QGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 523 ~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 434 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPH 434 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEc
Confidence 899999999999999999999999999764
No 12
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.1e-65 Score=542.25 Aligned_cols=440 Identities=19% Similarity=0.227 Sum_probs=365.6
Q ss_pred CCcccHHHHHHHHHHc-----CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCch
Q 008787 39 SDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCP 112 (553)
Q Consensus 39 ~~~~~l~~~l~~~a~~-----~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-gl~~gd~V~l~~~n~~ 112 (553)
..++++.++|.+++++ +|+++|+++. +. ++..+++||+||.++++++|++|.+. |+++||+|+++++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3467788999999998 9999999975 32 23347899999999999999999999 9999999999999999
Q ss_pred hHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhh
Q 008787 113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (553)
Q Consensus 113 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (553)
++++++|||+++|++++|+++.++.+++.++++.++++++|++......+..... ..+.+..++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999999999877665533222 2344455555543210
Q ss_pred CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHH--HHhhchhhhccccCCCCCCcEEE
Q 008787 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYL 270 (553)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 270 (553)
.....+.+++..... ..+.....++++++|+|||||||.||+|++||+ ++. ..... ..+ ++..+|+++
T Consensus 182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~ 251 (570)
T 3c5e_A 182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMW 251 (570)
T ss_dssp --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEE
Confidence 123456666654322 122234568899999999999999999999999 444 33332 333 678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCcEEEEec---CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 008787 271 SFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (553)
Q Consensus 271 ~~~p~~~~~g~~~-~~~~l~~g~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (553)
+..|++|.+++.. ++.++..|+++++.+ .++..+++.++++++|+++++|+++..|.+..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 315 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------- 315 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence 9999999999874 677899999999885 38999999999999999999999999886410
Q ss_pred HHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceee
Q 008787 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~ 426 (553)
... ..++++|.+++||+++++++.+.+.+.+|+++++.||+||++..++.
T Consensus 316 ----------------------~~~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 316 ----------------------LSS--------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp ----------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred ----------------------ccc--------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 000 01248999999999999999999999889999999999999866554
Q ss_pred ccCCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEe-----cCCccccccCChhhhhhhccCCccccCceE
Q 008787 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (553)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g 501 (553)
... .....+++|+|+++++++|+| +++ .+++.|+.|||+|+ |++++.||+++|+.+.+.|.+|||+|||+|
T Consensus 366 ~~~-~~~~~~~vG~p~~~~~v~i~d-~~g--~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKT-MKIKPGYMGTAASCYDVQIID-DKG--NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTT-SCCCTTCCCEECTTCCEEEEC-TTS--CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Ccc-cccCCCcccccCCCceEEEEC-CCC--CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 432 233458999999999999999 655 45567799999999 999999999999999999999999999999
Q ss_pred EEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
++|+||+|++.||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 442 ~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~ 491 (570)
T 3c5e_A 442 IKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPD 491 (570)
T ss_dssp EECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred EEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeC
Confidence 99999999999999999997 899999999999999999999999999764
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=7.2e-66 Score=541.46 Aligned_cols=428 Identities=23% Similarity=0.305 Sum_probs=325.2
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (553)
Q Consensus 40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (553)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4589999999999999999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeee
Q 008787 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (553)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (553)
||+++|++++|+++.++.+++.+++++++++++|++......+.... ........++.+++.. ..
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------GP 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------SS
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------cC
Confidence 99999999999999999999999999999999999988766543333 2334555666655421 12
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHH
Q 008787 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (553)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 279 (553)
+.++.........+.....++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111223334456789999999999999999999999999999988877766 788999999999999999
Q ss_pred HHHHHHHHHHc-CcEEEEecCChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 008787 280 DRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (553)
Q Consensus 280 g~~~~~~~l~~-g~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (553)
|+...+.++.. |+++++...++..+++.++++++|++.++|+++..|++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 99876665544 44455444599999999999999999999999999875320
Q ss_pred cCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCCccccCc
Q 008787 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437 (553)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~ 437 (553)
..++ +++|.++.+|++ ++.+.+.+.+ ++++++.||+||++++++....... ..+
T Consensus 268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 0011 389999999987 8888888888 9999999999999987766543322 245
Q ss_pred cCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecc--
Q 008787 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK-- 515 (553)
Q Consensus 438 ~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~-- 515 (553)
+|+|+++++++|+| +++ .+++.|+.|||+|+|++++.||+++|+.+.+.|.+|||+|||+|++|+||+|++.||.
T Consensus 323 ~G~p~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 89999999999999 554 4566779999999999999999999999999999999999999999999999999999
Q ss_pred cCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 516 KNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 516 ~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~ 435 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPD 435 (509)
T ss_dssp -------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccc
Confidence 999996 899999999999999999999999999875
No 14
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.6e-66 Score=548.04 Aligned_cols=417 Identities=20% Similarity=0.206 Sum_probs=315.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (553)
Q Consensus 39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (553)
....++.++|.++++++|+++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34679999999999999999999864 3 58999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceee
Q 008787 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (553)
Q Consensus 119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (553)
|||+++|++++|+++.++.+++.+++++++++++|++......+ .....+...+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~--------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA--------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc---------------
Confidence 99999999999999999999999999999999999997654432 1111221111100
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (553)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 278 (553)
.............++++++|+|||||||.||+|++||+++.+.+... ..+ ++..++++++.+|++|.
T Consensus 200 -------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~ 266 (570)
T 4gr5_A 200 -------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWD 266 (570)
T ss_dssp -----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSS
T ss_pred -------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHH
Confidence 00011122334578899999999999999999999999998776542 222 67889999999999987
Q ss_pred HHHHHHHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (553)
Q Consensus 279 ~g~~~~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (553)
.+...++.+++.|+++++.+. ++..+++.++++++|++.++|+++..|++....
T Consensus 267 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------- 323 (570)
T 4gr5_A 267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------- 323 (570)
T ss_dssp THHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------
Confidence 666667778999999998763 899999999999999999999999998652110
Q ss_pred HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC---
Q 008787 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--- 431 (553)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~--- 431 (553)
..++||.+++||+++++++.+.+.+.+ ++++++.||+||++++++......
T Consensus 324 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~ 378 (570)
T 4gr5_A 324 -------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL 378 (570)
T ss_dssp -------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGT
T ss_pred -------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccccc
Confidence 014899999999999999998888877 889999999999988776543322
Q ss_pred ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cC--------CccccCceEE
Q 008787 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQ 502 (553)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~--------g~~~TGD~g~ 502 (553)
.....++|+|+++++++|+| +++ .+++.|+.|||+|+|++++.||+++|+.+.+.| .+ |||+|||+|+
T Consensus 379 ~~~~~~iG~p~~~~~v~i~d-~~~--~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~ 455 (570)
T 4gr5_A 379 SGTALPIGVPLAGKRAYVLD-DDL--KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR 455 (570)
T ss_dssp TSSSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred CCCccccceeeCCCEEEEEC-CCC--CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence 22335689999999999999 554 455677999999999999999999999999998 33 6999999999
Q ss_pred EccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|+||+|+|+||.+|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 456 ~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 504 (570)
T 4gr5_A 456 RRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDS 504 (570)
T ss_dssp ECTTSCEEEEEC--------------------------------------
T ss_pred ECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeC
Confidence 9999999999999999997 899999999999999999999999999764
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.9e-65 Score=552.16 Aligned_cols=453 Identities=17% Similarity=0.210 Sum_probs=367.0
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (553)
Q Consensus 40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (553)
..+++.++|+++++++|+++|+++. +...+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3567889999999999999999985 3333455799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh---------hhhcccccc-ccCccEEEEecCCchHHHHH
Q 008787 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (553)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (553)
||+++|++++|+++.++++++.+++++++++++|+++.... .+.+..... ...+..+++++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999876422 111111110 01344556554321000
Q ss_pred HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHh-hchhhhccccCCCCCCcE
Q 008787 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV 268 (553)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~-~~~~~~~~~~~~~~~~~~ 268 (553)
.........|++++..... ..+.....++++++|+|||||||.||||++||++++.... .....+ ++..+|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 0000123567777654321 1233345678999999999999999999999999886653 333334 6788999
Q ss_pred EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHH
Q 008787 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (553)
Q Consensus 269 ~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (553)
+++..|++|..|+.. ++.++..|+++++.++ ++..+++.++++++|+++++|+++..|.+.....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------- 371 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA--------- 371 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG---------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc---------
Confidence 999999999999854 6778999999999864 7899999999999999999999999886421100
Q ss_pred HHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeecccc
Q 008787 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (553)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~tE 419 (553)
.... .+++||.+++||+++++++.+++.+.+| +++++.||+||
T Consensus 372 --------------------------~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 372 --------------------------IEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp --------------------------TTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred --------------------------cccC--------CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 0011 1248999999999999999999999888 89999999999
Q ss_pred CCCceeeccCC-CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhhc---cCC
Q 008787 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (553)
Q Consensus 420 ~g~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g 493 (553)
+++.++..... .....+++|+|++|++++|+| +++. +++.|+.|||+|+| |.++.||+++++.+.+.+ .+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 99876655432 234558999999999999999 6554 45567899999999 789999999999988876 389
Q ss_pred ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 494 ~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
||+|||+|++|+||+|+|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~ 552 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPH 552 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEE
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEc
Confidence 9999999999999999999999999998 799999999999999999999999999764
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=7e-65 Score=536.51 Aligned_cols=437 Identities=21% Similarity=0.245 Sum_probs=350.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 008787 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (553)
Q Consensus 39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (553)
..++++.++|.++++ +|+++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 456779999999999 9999999853 2 48999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCc-cEEEEecCCchHHHHHHhhCCcee
Q 008787 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIKP 197 (553)
Q Consensus 119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 197 (553)
|||+++|++++|+++.++.+++.+++++++++++|++......+..... ..... ..++.++..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc--------cccc
Confidence 9999999999999999999999999999999999999876654433221 11122 334443332110 0012
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhH-HHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (553)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 276 (553)
..++++..... .........++++++++|||||||.||+|++||+++ ..........+ ++..+|++++.+|++
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred cchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence 24666654321 122233457889999999999999999999999999 56555544333 678899999999999
Q ss_pred HHHHHHH-HHHHHHcCcEEEEec-C-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787 277 HILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (553)
Q Consensus 277 ~~~g~~~-~~~~l~~g~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (553)
|.+++.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..+++... .
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~---------------- 294 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L---------------- 294 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C----------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c----------------
Confidence 9999875 556899999998873 3 89999999999999999999999988753100 0
Q ss_pred HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (553)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~ 433 (553)
.... ..++|.+++||+++++++.+.+++.+|+++++.||+||++.+.+...... .
T Consensus 295 ------------~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 295 ------------PARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp ------------CCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred ------------cccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 0000 02799999999999999999999989999999999999977666554433 3
Q ss_pred ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEe
Q 008787 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (553)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~G 513 (553)
..+++|+|+++++++|+| +++. ++++|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+|++.|
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~G 426 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAG 426 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred ccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeC
Confidence 447899999999999999 6554 5567799999999999999999999999999999999999999999999999999
Q ss_pred cccCceecCCceeecchhHHHHHhcCcCcceEEEEec
Q 008787 514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYS 550 (553)
Q Consensus 514 R~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~ 550 (553)
|.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.
T Consensus 427 R~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~ 462 (529)
T 2v7b_A 427 RSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGV 462 (529)
T ss_dssp EGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEE
T ss_pred ccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999997 8999999999999999999999999986
No 17
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.8e-65 Score=549.89 Aligned_cols=453 Identities=17% Similarity=0.210 Sum_probs=366.7
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHH
Q 008787 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM 118 (553)
Q Consensus 40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~-~~gl~~gd~V~l~~~n~~~~~~~~ 118 (553)
..+++.++|+++++++|+++|+++. +...+..+++||+||.+++.++|+.|+ ++|+++||+|+++++|++++++++
T Consensus 80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence 3578999999999999999999985 333345579999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh---------hhhccccccccCccEEEEecCCchHHHHH
Q 008787 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (553)
Q Consensus 119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (553)
|||+++|++++|+++.++.+++.+++++++++++|+++.... .+.+.. ...+.+..+++++......
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~--- 232 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPS--- 232 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSS---
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCc---
Confidence 999999999999999999999999999999999999876432 111111 1223445566654321000
Q ss_pred HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhh-chhhhccccCCCCCCcE
Q 008787 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV 268 (553)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~ 268 (553)
..........|.++..... ...+.....++++++|+|||||||.||||++||.+++..... ....+ ++..+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 306 (663)
T 1ry2_A 233 VAFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDV 306 (663)
T ss_dssp CCCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCE
T ss_pred cccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcE
Confidence 0000112456777765432 222334457889999999999999999999999998766543 33333 6788999
Q ss_pred EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHH
Q 008787 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (553)
Q Consensus 269 ~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (553)
+++..|++|..|+.. ++.++..|+++++.++ ++..+++.|+++++|+++++|++++.|.+....
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---------- 376 (663)
T 1ry2_A 307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS---------- 376 (663)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT----------
T ss_pred EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc----------
Confidence 999999999999854 6778999999999864 789999999999999999999999887531100
Q ss_pred HHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeecccc
Q 008787 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (553)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~i~~~YG~tE 419 (553)
..+.. .+++||.+++||+++++++.+++.+.+| +++++.||+||
T Consensus 377 -------------------------~~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 423 (663)
T 1ry2_A 377 -------------------------YIENH--------SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 423 (663)
T ss_dssp -------------------------SSSSC--------CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred -------------------------ccccC--------CcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcc
Confidence 00011 1248999999999999999999999887 89999999999
Q ss_pred CCCceeeccC--CCccccCccCCCCCCeeEEEeecC-CCCCCCCCC-CCCCeEEEec--CCccccccCChhhhhhhc---
Q 008787 420 TCGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI--- 490 (553)
Q Consensus 420 ~g~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~-~~~Gei~v~~--~~~~~gy~~~~~~~~~~~--- 490 (553)
+++.++.... ......+++|+|++|++++|+| + ++. +++. |+.|||+|+| |+++.||+++++.+.+.|
T Consensus 424 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~ 500 (663)
T 1ry2_A 424 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP 500 (663)
T ss_dssp TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS
T ss_pred ccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC
Confidence 9877666543 2234558999999999999999 5 443 3334 7899999999 589999999999998876
Q ss_pred cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 491 ~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
.+|||+|||+|++|+||+|+|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 501 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~ 561 (663)
T 1ry2_A 501 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFND 561 (663)
T ss_dssp STTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCC
T ss_pred CCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEec
Confidence 3799999999999999999999999999997 799999999999999999999999999875
No 18
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.8e-64 Score=540.14 Aligned_cols=414 Identities=19% Similarity=0.161 Sum_probs=347.5
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
..++.++|.++++++|+++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 26 ~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~la 96 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA 96 (620)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999874 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (553)
|+++|++++|+++.++.+++.++++++++++++++........ ..... .+
T Consensus 97 ilkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~----------------------~~ 146 (620)
T 4dg8_A 97 ILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV----------------------PV 146 (620)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE----------------------EG
T ss_pred HHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee----------------------ee
Confidence 9999999999999999999999999999999997654332110 11110 00
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (553)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 280 (553)
..+. ............++++++++|||||||.||||+++|+++.+.+.. ...+ .+..+++++...|++|..+
T Consensus 147 ~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 147 RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 0000 001111223346889999999999999999999999999887765 2333 6788999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 008787 281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (553)
Q Consensus 281 ~~~~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (553)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++...
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------- 272 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------- 272 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG--------------------------
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh--------------------------
Confidence 8888889999999998752 89999999999999999999999998864100
Q ss_pred ccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC---cc
Q 008787 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MC 433 (553)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~---~~ 433 (553)
..+++||.+++||+++++++.+.+.+.+ ++++++.||+||++..++...... ..
T Consensus 273 ----------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 330 (620)
T 4dg8_A 273 ----------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE 330 (620)
T ss_dssp ----------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred ----------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence 0014899999999999988888776665 889999999999998766543222 23
Q ss_pred ccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccC--------CccccCceEEEcc
Q 008787 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILP 505 (553)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~TGD~g~~~~ 505 (553)
...++|+|+++++++|+| +++. ..++.|+.|||+|+|+.++.||+++|+.|++.|.+ +||+|||+|++++
T Consensus 331 ~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~ 408 (620)
T 4dg8_A 331 DDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE 408 (620)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT
T ss_pred CCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC
Confidence 346899999999999999 5544 33556799999999999999999999999999943 7999999999999
Q ss_pred CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
||+|+|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++
T Consensus 409 dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~ 454 (620)
T 4dg8_A 409 QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRER 454 (620)
T ss_dssp TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeC
Confidence 9999999999999998 899999999999999999999999998753
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.2e-64 Score=533.78 Aligned_cols=415 Identities=20% Similarity=0.255 Sum_probs=345.6
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
..++.++|.++++++|+++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (553)
|+++|++++|+++.++.+++.+++++++++++|++......+.... ....+..+.... +
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------~ 167 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------I 167 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST----------------T
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh----------------h
Confidence 9999999999999999999999999999999999987654432211 111222222110 0
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (553)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 280 (553)
... .......+..++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++..|++|..+
T Consensus 168 ----~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 237 (563)
T 1amu_A 168 ----KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS 237 (563)
T ss_dssp ----TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred ----ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence 000 011112334678999999999999999999999999998877766555 7788999999999999998
Q ss_pred HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (553)
Q Consensus 281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (553)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+.
T Consensus 238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 290 (563)
T 1amu_A 238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------------------------- 290 (563)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------------
T ss_pred HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------------
Confidence 8777788999999998764 889999999999999999999998765310
Q ss_pred hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC--ccc
Q 008787 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCM 434 (553)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--~~~ 434 (553)
..+++|.+++||+++++++.+.+.+ .+++++.||+||++..++...... ...
T Consensus 291 ------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 344 (563)
T 1amu_A 291 ------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH 344 (563)
T ss_dssp ------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred ------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence 0148999999999999999999877 478999999999987766543322 223
Q ss_pred cCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc-------CCccccCceEEEccCC
Q 008787 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507 (553)
Q Consensus 435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~g~~~~dG 507 (553)
..++|+|+|+++++|+| +++. +++.|+.|||+|+|++++.||+++|+.|++.|. ++||+|||+|++|+||
T Consensus 345 ~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG 421 (563)
T 1amu_A 345 SVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG 421 (563)
T ss_dssp SCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred CCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence 46899999999999999 5554 556679999999999999999999999999883 2499999999999999
Q ss_pred cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus 422 ~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~ 465 (563)
T 1amu_A 422 NIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKD 465 (563)
T ss_dssp CEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred eEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence 99999999999997 899999999999999999999999999864
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.3e-64 Score=530.10 Aligned_cols=419 Identities=17% Similarity=0.214 Sum_probs=355.0
Q ss_pred ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 008787 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
+|+.++|+++++++|+++|+++. + +++||+||.++++++|++|.++ |.++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999864 3 6899999999999999999986 889999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (553)
|+++|++++|+++.++.+++.++++.++++++|++......... . .....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~-------~---------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG-------Q---------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC-------C---------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc-------c---------------------ccceecH
Confidence 99999999999999999999999999999999987653221100 0 0113345
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (553)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 280 (553)
.++...............++++++|+|||||||.||+|++||+++.+.+......+ ++..++++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554433322333445788999999999999999999999999999888776666 7888999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (553)
Q Consensus 281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (553)
+...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++...
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8778889999999998764 89999999999999999999999988753110
Q ss_pred hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC----
Q 008787 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (553)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~---- 431 (553)
... ..++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++......
T Consensus 254 ------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------ccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 000 1124899999999999999999999998 899999999999988766543221
Q ss_pred ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc--cCC--ccccCceEEEccCC
Q 008787 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (553)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~--~~g--~~~TGD~g~~~~dG 507 (553)
.....++|+|+|+++++|+| +++ .++++|+.|||+|+||+++.||+++|+.+++.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEG--QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCC--CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12235799999999999999 554 456678999999999999999999999999998 344 7999999999 599
Q ss_pred cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 433 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQP 433 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECS
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcC
Confidence 99999999999997 899999999999999999999999999764
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.6e-64 Score=569.99 Aligned_cols=474 Identities=26% Similarity=0.342 Sum_probs=346.1
Q ss_pred ccccCCCCCCCCCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHH
Q 008787 10 EGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQI 89 (553)
Q Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~l 89 (553)
+.-+..++++....+|++......+| ...++.++|.++++++|+++|+++. +. + +++||+||.++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~tl~~~l~~~a~~~pd~~Al~~~---~~--~--~~~TY~eL~~~~~~l 101 (979)
T 3tsy_A 33 QVMEKQSNNNNSDVIFRSKLPDIYIP----NHLSLHDYIFQNISEFATKPCLING---PT--G--HVYTYSDVHVISRQI 101 (979)
T ss_dssp ------------CCCBCCSSCCCCCC----TTSCHHHHHTTTGGGTTTSEEEEET---TT--C--CEEEHHHHHHHHHHH
T ss_pred HhhhhcccCCCCCceeecCCCCCCCC----CCCCHHHHHHHHHHhCCCCeEEEEC---CC--C--cEEEHHHHHHHHHHH
Confidence 33344555666778888876554444 3589999999999999999999864 21 2 589999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhcccccc
Q 008787 90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 169 (553)
Q Consensus 90 a~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (553)
|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++++++.+++++++++++|++......+.......
T Consensus 102 A~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~ 181 (979)
T 3tsy_A 102 AANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD 181 (979)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS
T ss_pred HHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987765543332211
Q ss_pred ccCccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccc--cccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHH
Q 008787 170 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247 (553)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~ 247 (553)
...++.+++... ........++.++...... ...+.....++++++|+|||||||.||+|++||+++++
T Consensus 182 ---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~ 252 (979)
T 3tsy_A 182 ---GVVIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT 252 (979)
T ss_dssp ---CCEEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHH
T ss_pred ---CceEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHH
Confidence 123444443211 0111234556655543322 12233456789999999999999999999999999998
Q ss_pred HHhhchhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHH
Q 008787 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEK 325 (553)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~ 325 (553)
.+........ ....+..++++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..
T Consensus 253 ~~~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 331 (979)
T 3tsy_A 253 SVAQQVDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLA 331 (979)
T ss_dssp HHHHHHCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHH
T ss_pred HHHHHHHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHH
Confidence 8765433211 0125678999999999999999965 5668999999999876 99999999999999999999999998
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHH
Q 008787 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV 405 (553)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 405 (553)
|++... ....+ +++||.+++||+++++++.+++.+
T Consensus 332 l~~~~~-------------------------------------~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~ 366 (979)
T 3tsy_A 332 IAKSSE-------------------------------------TEKYD--------LSSIRVVKSGAAPLGKELEDAVNA 366 (979)
T ss_dssp HHHCGG-------------------------------------GGTSC--------CTTCCEEEESSCCCCSSHHHHHHH
T ss_pred HHhCcc-------------------------------------ccCCC--------ccceEEEEEcCCCCCHHHHHHHHH
Confidence 865211 11111 248999999999999999999999
Q ss_pred hc-CCceEeeeccccCCCceeecc----CCCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCcccccc
Q 008787 406 TC-CAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480 (553)
Q Consensus 406 ~~-~~~i~~~YG~tE~g~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~ 480 (553)
.+ ++++++.||+||++.+++... .......+++|+|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+
T Consensus 367 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~ 444 (979)
T 3tsy_A 367 KFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYL 444 (979)
T ss_dssp HCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEET
T ss_pred HCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCcccccc
Confidence 88 899999999999998766542 12233457899999999999999 4433 45667899999999999999999
Q ss_pred CChhhhhhhc-cCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 481 KNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 481 ~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
++|+.+.+.| .+|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 445 ~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~ 516 (979)
T 3tsy_A 445 NNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKE 516 (979)
T ss_dssp TCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------
T ss_pred CChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecc
Confidence 9999999999 7999999999999999999999999999997 799999999999999999999999999764
No 22
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=9.6e-65 Score=533.32 Aligned_cols=420 Identities=18% Similarity=0.191 Sum_probs=349.1
Q ss_pred ccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 008787 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (553)
Q Consensus 42 ~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (553)
+|+.++|+++++++|+++|+++. + +++||+||.++++++|++|.++|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR----D-----AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC----C-----ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999874 3 58999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeHH
Q 008787 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (553)
Q Consensus 122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (553)
+++|++++|+++.++.+++.++++.+++++++++....... .. ..++... .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence 99999999999999999999999999999999875432110 00 1111110 111
Q ss_pred HHHh-cccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787 202 EFLH-LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (553)
Q Consensus 202 ~l~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 280 (553)
.+.. .......+.....++++++++|||||||.||+|++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 1111 111122233445789999999999999999999999999999888877666 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (553)
Q Consensus 281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (553)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8878889999999999874 89999999999999999999999988753110
Q ss_pred hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC----
Q 008787 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (553)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~---- 431 (553)
... ..++++|.+++||+++++++.+++.+.+ ++++++.||+||++..++......
T Consensus 255 ------------~~~--------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSE--------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CST--------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccc--------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 000 1124899999999999999999999988 889999999999988776544322
Q ss_pred ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhcc----CCccccCceEEEccCC
Q 008787 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (553)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~g~~~~dG 507 (553)
.....++|+|.++++++++| +++. ++++|+.|||+|+||+++.||+++|+.+.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346789999999999999 5554 555679999999999999999999999999983 459999999999 799
Q ss_pred cEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 434 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKK 434 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEE
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEec
Confidence 99999999999997 899999999999999999999999998753
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.9e-64 Score=538.84 Aligned_cols=435 Identities=19% Similarity=0.204 Sum_probs=362.1
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
..++.++|.++++ ||++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 26 ~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA 94 (617)
T 3rg2_A 26 DLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA 94 (617)
T ss_dssp CCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 5789999999887 999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhh----hhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (553)
|+++|++++|+++..+.+++.++++++++++++++..... ...............+........
T Consensus 95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (617)
T 3rg2_A 95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------ 162 (617)
T ss_dssp HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence 9999999999999999999999999999999999876531 111111112234444444443321
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (553)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 276 (553)
..+.+...... ......+..++++++++|||||||.||+|+++|+++.+.+......+ ++..++++++.+|++
T Consensus 163 -~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 235 (617)
T 3rg2_A 163 -HNLQDAINHPA-EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA 235 (617)
T ss_dssp -TBHHHHHHSCC-SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred -cchhhhhcccc-cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence 13333333321 22233445788999999999999999999999999999988877776 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 008787 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (553)
Q Consensus 277 ~~~g~~~--~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (553)
|.+++.. .+.++..|+++++.+. ++..++..++++++|++.++|+++..+++........
T Consensus 236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------- 298 (617)
T 3rg2_A 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR----------------- 298 (617)
T ss_dssp SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT-----------------
T ss_pred hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc-----------------
Confidence 9999874 6678999999999876 8999999999999999999999999987643221100
Q ss_pred HHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcc
Q 008787 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (553)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~ 433 (553)
...+++|.+++||+++++++.+.+.+.+++++++.||+||++...+........
T Consensus 299 --------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~ 352 (617)
T 3rg2_A 299 --------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEK 352 (617)
T ss_dssp --------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHH
T ss_pred --------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccc
Confidence 011489999999999999999999999999999999999987655443333333
Q ss_pred ccCccCCCC-CCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEE
Q 008787 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (553)
Q Consensus 434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~ 511 (553)
...++|.|+ ++.+++|+| +++ .+++.|+.|||+|+|+.++.||+++|+.|++.| .++||+|||+|++++||+|++
T Consensus 353 ~~~~~G~p~~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~ 429 (617)
T 3rg2_A 353 IIHTQGYPMCPDDEVWVAD-AEG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITV 429 (617)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTS--CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cccCCCccCCCCceEEEEC-CCC--CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEE
Confidence 346789887 788999999 555 456677999999999999999999999999999 799999999999999999999
Q ss_pred EecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 512 ~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++
T Consensus 430 ~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~ 469 (617)
T 3rg2_A 430 QGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMED 469 (617)
T ss_dssp EEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred EeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccC
Confidence 9999999997 799999999999999999999999998653
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.6e-64 Score=528.85 Aligned_cols=421 Identities=17% Similarity=0.152 Sum_probs=344.3
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
+.++.+.|+++++++|+++|+.+. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (553)
|+++|++++|+++.++.+++.++++.++++++|++.+....+. .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876432211 11 1 1122
Q ss_pred HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHH
Q 008787 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (553)
Q Consensus 201 ~~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 278 (553)
.++.... ...........++++++|+|||||||.||+|++||+++.+.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221110 0112223445789999999999999999999999999998776554331 1256788999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 008787 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (553)
Q Consensus 279 ~g~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (553)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888777888999999988764 89999999999999999999999987753100
Q ss_pred HHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC--
Q 008787 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~-- 431 (553)
.... ..+++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++......
T Consensus 258 --------------~~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQA--------KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------cccc--------cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 0000 114899999999999999999999888 899999999999988766543221
Q ss_pred --ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc----cCCccccCceEEEcc
Q 008787 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP 505 (553)
Q Consensus 432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~----~~g~~~TGD~g~~~~ 505 (553)
.....++|+|+|+++++|+| +++. +++.|+.|||+|+||+++.||+++|+.+++.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12336799999999999999 6554 45667999999999999999999999999988 356999999999999
Q ss_pred CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
||+|++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 438 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYN 438 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCS
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeec
Confidence 9999999999999997 799999999999999999999999998753
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.4e-64 Score=529.04 Aligned_cols=429 Identities=22% Similarity=0.232 Sum_probs=344.5
Q ss_pred cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 008787 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (553)
Q Consensus 43 ~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~ 122 (553)
|+.++|.++++++|+++|+++. + +++||+||.++++++|++|++. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 5678899999999999999864 2 4899999999999999999986 89999999999999999999999
Q ss_pred hcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCcee-eeHH
Q 008787 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWD 201 (553)
Q Consensus 123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (553)
++|++++|+++.++.+++.++++.++++++|++............ .................. ....... ....
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLLD---NTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccccc---cccccccccchh
Confidence 999999999999999999999999999999999876543322111 011111110000000000 0000000 0011
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHH
Q 008787 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (553)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~ 281 (553)
.+...............++++++++|||||||.||+|++||+++.+.+..+...+ ++..++++++.+|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111223345789999999999999999999999999999988877666 78899999999999999999
Q ss_pred HHHHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccC
Q 008787 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (553)
Q Consensus 282 ~~~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (553)
...+.++..|+++++.+. +++.+++.++++++|++.++|+++..|.+....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999876 999999999999999999999999988652100
Q ss_pred CcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCC-ccccCccC
Q 008787 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG 439 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-~~~~~~~G 439 (553)
...++|.+++||+++++++.+.+.+ +++++++.||+||+++.++...... .....++|
T Consensus 272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0027999999999999999999987 4999999999999987655443322 33457899
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCce
Q 008787 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (553)
Q Consensus 440 ~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i 519 (553)
+|+++++++++| ++ .++.|||+|+|+.++.||+++++.+.+ |.+|||+|||+|++|+||+|+++||.+|+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence 999999999999 43 346899999999999999999999887 889999999999999999999999999999
Q ss_pred ecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 520 KISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 520 ~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
++ +|++|+|.+||++|.+||+|.+|+|+|.++
T Consensus 402 k~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~ 433 (501)
T 3ipl_A 402 IS-GGENIYPYQIETVAKQFPGISDAVCVGHPD 433 (501)
T ss_dssp EC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred EE-CCEEECHHHHHHHHHhCCCccEEEEEEEec
Confidence 96 899999999999999999999999999764
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.6e-64 Score=524.98 Aligned_cols=417 Identities=26% Similarity=0.312 Sum_probs=340.3
Q ss_pred CCcccHHHHHHHHHHcCCC-CCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 008787 39 SDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (553)
Q Consensus 39 ~~~~~l~~~l~~~a~~~p~-~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (553)
.+|.++.+.|.++++++|+ ++|+++. + +++||+||.++++++|..|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4578999999999999887 9999864 3 68999999999999998774 488999999999999999
Q ss_pred HHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCcee
Q 008787 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (553)
Q Consensus 118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (553)
+|||+++|++++|+++.++.+++.+++++++++++|++..... ......... +.++..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~-~~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALER-VDVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEE-EECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhccccc-cccccc---------------
Confidence 9999999999999999999999999999999999999865211 000111111 111110
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHH
Q 008787 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (553)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 277 (553)
.....+.....++++++++|||||||.||+|++||+++.+.+......+ ++..+|++++.+|++|
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 207 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH 207 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence 0111223345778999999999999999999999999999988877776 7889999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 008787 278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (553)
Q Consensus 278 ~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (553)
..|+.. .+.++..|+++++.+. ++..+++.+ ++++|+++++|+++..|++.+.....
T Consensus 208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------- 266 (505)
T 3nyq_A 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE-------------------- 266 (505)
T ss_dssp HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--------------------
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--------------------
Confidence 999875 6778999999998876 899999999 88999999999999998764321110
Q ss_pred HhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCcccc
Q 008787 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435 (553)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~ 435 (553)
....+ +++|.+++||+++++++.+++.+.++.++++.||+||++..++..... ....
T Consensus 267 --------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~ 323 (505)
T 3nyq_A 267 --------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRA 323 (505)
T ss_dssp --------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCT
T ss_pred --------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCC
Confidence 01112 279999999999999999999998999999999999998766654433 3344
Q ss_pred CccCCCCCCeeEEEeecCCCCCCCC-CCCCCCeEEEecCCccccccCChhhhhhhc-cCCccccCceEEEccCCcEEEEe
Q 008787 436 GTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID 513 (553)
Q Consensus 436 ~~~G~~~~~~~v~i~~~~~~~~~~~-~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~G 513 (553)
+++|+|+++++++|+| +++...+. +.|+.|||+|+|+.++.||+++|+.+++.| .+|||+|||+|++|+||+|+++|
T Consensus 324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~G 402 (505)
T 3nyq_A 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG 402 (505)
T ss_dssp TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeC
Confidence 7899999999999999 66655443 447899999999999999999999999999 69999999999999999999999
Q ss_pred cc-cCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 514 RK-KNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 514 R~-~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
|. +|+|++ +|++|+|.|||++|.+||+|.+|+|+|.++
T Consensus 403 R~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~ 441 (505)
T 3nyq_A 403 RKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPD 441 (505)
T ss_dssp ESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred CccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeEC
Confidence 98 589997 899999999999999999999999999764
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.3e-63 Score=532.51 Aligned_cols=435 Identities=17% Similarity=0.224 Sum_probs=353.7
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (553)
Q Consensus 40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (553)
...++.++|.++++++|+++|+++. ++ +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 4689999999999999999999986 42 233799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeCCCCCC---hhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCce
Q 008787 120 ACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (553)
Q Consensus 120 A~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (553)
||+++|++++|+++..+ .+++.++++.+++++++++......+........+....+..
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 145 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA------------------ 145 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEE------------------
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccce------------------
Confidence 99999999999999874 578999999999999999988766553322111111111111
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChH
Q 008787 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (553)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 276 (553)
...+.+.... ..........++++++|+|||||||.||+|++||+++++.+......+ ++..++++++++|++
T Consensus 146 -~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 146 -IALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp -EEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred -eechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 1111111111 112233456789999999999999999999999999999998877766 788999999999999
Q ss_pred HHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 008787 277 HILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (553)
Q Consensus 277 ~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (553)
|.+|+.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+++.+....
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------- 282 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK---------------- 282 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG----------------
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh----------------
Confidence 9999986 7778999999998764 79999999999999999999999988865321110
Q ss_pred HHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEeeeccccCCCce
Q 008787 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPT 424 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~i~~~YG~tE~g~~~ 424 (553)
.... .++++|.+++||+++++++.+.+.+.++ .++++.||+||++.++
T Consensus 283 ------------------~~~~--------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~ 336 (590)
T 3kxw_A 283 ------------------KEGL--------DLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV 336 (590)
T ss_dssp ------------------GTTC--------CCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred ------------------ccCC--------CchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence 0111 1248999999999999999999998873 4699999999999877
Q ss_pred eeccCC--------------------------CccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCcccc
Q 008787 425 TVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478 (553)
Q Consensus 425 ~~~~~~--------------------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~g 478 (553)
+..... ......++|+|+++ ++|+| +++ ..+++.|+.|||+|+||+++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~G 412 (590)
T 3kxw_A 337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAKG 412 (590)
T ss_dssp EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCCC
T ss_pred ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccccc
Confidence 754321 12234678999988 78888 443 3566778999999999999999
Q ss_pred ccCChhhhhhhccC-------C--ccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHH-hcCcCcc--eEE
Q 008787 479 YYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DVS 546 (553)
Q Consensus 479 y~~~~~~~~~~~~~-------g--~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l-~~~p~V~--~~~ 546 (553)
|+++|+.+++.|.+ | ||+|||+|++| ||+|+|+||.+|+|++ +|++|+|.|||++| ..||.|. +|+
T Consensus 413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~ 490 (590)
T 3kxw_A 413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCA 490 (590)
T ss_dssp BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEE
T ss_pred ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEE
Confidence 99999999999843 5 99999999999 9999999999999997 89999999999999 8899999 899
Q ss_pred EEecCC
Q 008787 547 ISYSSV 552 (553)
Q Consensus 547 V~g~~~ 552 (553)
|+|.++
T Consensus 491 v~~~~~ 496 (590)
T 3kxw_A 491 AFVIQE 496 (590)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 998754
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.1e-62 Score=523.93 Aligned_cols=440 Identities=19% Similarity=0.249 Sum_probs=355.6
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Q 008787 31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n 110 (553)
...+|...+.+.++.++|+++++++|+.+++.. ..+..+++||+||.++++++|+.|+++|+++||+|+++++|
T Consensus 10 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (576)
T 3gqw_A 10 THSLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAET 83 (576)
T ss_dssp ----CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCS
T ss_pred cCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 345666667789999999999999999887743 22233789999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCEEeeCCCCCC-------hhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCc
Q 008787 111 CPQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (553)
Q Consensus 111 ~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (553)
++++++++|||+++|++++|+++.++ .+++.++++.+++++++++......+..... ..+... +
T Consensus 84 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~-~------- 154 (576)
T 3gqw_A 84 SSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATH-DNPELH-V------- 154 (576)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGG-GCTTCE-E-------
T ss_pred cHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhc-cCCcce-e-------
Confidence 99999999999999999999999998 7899999999999999999887655433221 111111 1
Q ss_pred hHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCC
Q 008787 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM 263 (553)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~ 263 (553)
...... ..............++++++|+|||||||.||+|++||+++++.+...... ..++
T Consensus 155 --------------~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~ 215 (576)
T 3gqw_A 155 --------------LSHAWF-KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD----GIKL 215 (576)
T ss_dssp --------------EEHHHH-HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT----TSCC
T ss_pred --------------cchhhh-hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc----ccCC
Confidence 111111 111122223344568899999999999999999999999999887765433 1267
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhh
Q 008787 264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (553)
Q Consensus 264 ~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~ 337 (553)
..+|++++++|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+.+....
T Consensus 216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--- 292 (576)
T 3gqw_A 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD--- 292 (576)
T ss_dssp CTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH---
T ss_pred CCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc---
Confidence 88999999999999999875 5567888988888763 88999999999999999999999987754221110
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc------CCce
Q 008787 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAFL 411 (553)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~------~~~i 411 (553)
.....++++|.+++||+++++++.+++.+.+ +..+
T Consensus 293 ---------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (576)
T 3gqw_A 293 ---------------------------------------LAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTF 333 (576)
T ss_dssp ---------------------------------------HTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGE
T ss_pred ---------------------------------------cccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccc
Confidence 0111125899999999999999999999887 6789
Q ss_pred EeeeccccCCCceeeccCCCc---------------------------cccCccCCCCCCeeEEEeecCCCCCCCCCCCC
Q 008787 412 VQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP 464 (553)
Q Consensus 412 ~~~YG~tE~g~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~ 464 (553)
++.||+||++..++....... ....++|+|+|+++++|+| +++ .+++.|+
T Consensus 334 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g--~~~~~g~ 410 (576)
T 3gqw_A 334 MPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAG--MPVAERV 410 (576)
T ss_dssp EEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTS--CBCCTTB
T ss_pred cccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCC--CCCCCCC
Confidence 999999999987775532210 1113789999999999999 555 4556779
Q ss_pred CCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHHhcCcCcce
Q 008787 465 CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (553)
Q Consensus 465 ~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~ 544 (553)
.|||+|+|+.++.||+++++.+.+.+.+|||+|||+|++ +||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+
T Consensus 411 ~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 488 (576)
T 3gqw_A 411 VGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHS 488 (576)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCT
T ss_pred eEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCccccc
Confidence 999999999999999999999888789999999999999 79999999999999998 8999999999999999999999
Q ss_pred EEEEecC
Q 008787 545 VSISYSS 551 (553)
Q Consensus 545 ~~V~g~~ 551 (553)
|+|++..
T Consensus 489 ~~vv~~~ 495 (576)
T 3gqw_A 489 GDAIAFV 495 (576)
T ss_dssp TSEEEEE
T ss_pred ccEEEEE
Confidence 8888754
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.6e-63 Score=525.87 Aligned_cols=435 Identities=17% Similarity=0.149 Sum_probs=317.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeecccCC----CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 008787 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (553)
Q Consensus 39 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~d~----~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~ 114 (553)
....++.++|+++++++|+++|+++. ++ ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 34688999999999999999999875 32 12234789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCC
Q 008787 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (553)
Q Consensus 115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (553)
++++|||+++|++++|+++.++.+++.+++++++++++|++......+. ......++....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~------------- 153 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN------------- 153 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-------------
Confidence 9999999999999999999999999999999999999999876543321 111122222111
Q ss_pred ceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhc---cccCCCCCCcEEEE
Q 008787 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS 271 (553)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~ 271 (553)
..+.+...... .........++++++|+|||||||.||+|++||+++.+.+..+...+. .....+...+++++
T Consensus 154 ---~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (562)
T 3ite_A 154 ---QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229 (562)
T ss_dssp ---HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred ---hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence 11222222211 111223446788999999999999999999999999888766544321 11124677899999
Q ss_pred ecChHHHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 008787 272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (553)
Q Consensus 272 ~~p~~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (553)
..|+.|..++...+.++..|+++++.+. .++.+.+.++++++|++.++|+++..+..
T Consensus 230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~--------------------- 288 (562)
T 3ite_A 230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL--------------------- 288 (562)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC---------------------
T ss_pred ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc---------------------
Confidence 9999998888777788999999888765 46788999999999999999998776421
Q ss_pred HHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccC
Q 008787 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429 (553)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~ 429 (553)
.+ ...++||.+++||+++++++.+.+++.+++++++.||+||++..++....
T Consensus 289 ----------------~~------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 340 (562)
T 3ite_A 289 ----------------VP------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI 340 (562)
T ss_dssp ----------------CG------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC
T ss_pred ----------------Cc------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee
Confidence 00 01148999999999999999999999889999999999999887776554
Q ss_pred CCccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCC--ccccCceEEEccCC
Q 008787 430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNG 507 (553)
Q Consensus 430 ~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGD~g~~~~dG 507 (553)
.......++|+|++++++++++ ++++ .+++.|+.|||+|+|+.++.||+++|+.+...+.+| ||+|||+|++|+||
T Consensus 341 ~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG 418 (562)
T 3ite_A 341 LPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADS 418 (562)
T ss_dssp CTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTS
T ss_pred cCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCC
Confidence 4444457899999999999999 4433 456678999999999999999999999988777777 99999999999999
Q ss_pred cEEEEecccCceecCCceeecchhHHHHHhcC-cCcceEEEEecCC
Q 008787 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDVSISYSSV 552 (553)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~-p~V~~~~V~g~~~ 552 (553)
+|+++||.+|+|++ +|++|+|.|||++|.+| |.|.+++|++.++
T Consensus 419 ~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~ 463 (562)
T 3ite_A 419 SILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNH 463 (562)
T ss_dssp CEEEEEEC--------------------------------------
T ss_pred eEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecC
Confidence 99999999999997 89999999999999998 8899999887654
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-59 Score=539.10 Aligned_cols=419 Identities=20% Similarity=0.242 Sum_probs=350.4
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (553)
..++.++|.++++++|+++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999864 3 4899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCchHHHHHHhhCCceeeeH
Q 008787 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (553)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (553)
|+++|++++|++|.++.+++.++++++++++++++......+.. .+.....+.+++.. .+
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~---------------~~ 593 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQT---------------RF 593 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGG---------------GG
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEecccc---------------cc
Confidence 99999999999999999999999999999999998875443211 11122333333210 00
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHH
Q 008787 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (553)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 280 (553)
.. ....+.....++++++++|||||||.||||+++|+++.+... ....+ ++..+++++...|+.+..+
T Consensus 594 ----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~~-~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 594 ----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVK-HVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp ----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHS-SCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred ----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHHH-HHHhc-----CCCCCCEEEEECCccHHHH
Confidence 00 111222345788999999999999999999999999987633 33333 6788999999999998888
Q ss_pred HHHHHHHHHcCcEEEEecC----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 008787 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (553)
Q Consensus 281 ~~~~~~~l~~g~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (553)
...++.++..|+++++.+. ++..+.+.|+++++|+++++|+++..|.+....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 7778889999999999874 899999999999999999999999988642100
Q ss_pred hccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCCCceeeccCCC---c
Q 008787 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (553)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~tE~g~~~~~~~~~~---~ 432 (553)
.+ +++|.+++||+++++++.+.+.+.+ +.++++.||+||++..++...... .
T Consensus 718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 01 2799999999999999999888877 468999999999998766543221 2
Q ss_pred cccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhc-c------CCccccCceEEEcc
Q 008787 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQILP 505 (553)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~------~g~~~TGD~g~~~~ 505 (553)
....++|+|+++++++|+| +++ .+++.|+.|||+|+|+.+++||+++|+.|++.| . ++||+|||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQS--QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTS--CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCc--CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2336799999999999999 554 455677999999999999999999999999998 2 34999999999999
Q ss_pred CCcEEEEecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
||.|+|+||.||+||+ +|++|.|.|||++|.+||+|.+|+|++.++
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~ 896 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRH 896 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEec
Confidence 9999999999999998 799999999999999999999999998754
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3e-58 Score=480.66 Aligned_cols=401 Identities=16% Similarity=0.189 Sum_probs=312.0
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 008787 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (553)
Q Consensus 40 ~~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (553)
+..++.++|.++++++|+++|+++....++.++..+++||+||.++++++|++|+++|+ +||+|+++++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 46899999999999999999999871111334555799999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCEEeeCCC---CCChhHHHHHHhhcCceEEEEcchhhhhhhcccccccc-CccEEEEecCCchHHHHHHhhCCc
Q 008787 120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGI 195 (553)
Q Consensus 120 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 195 (553)
||+++|++++|+++ .++.+++.++++.++++++|++......+......... ....++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 77889999999999999999998877665443321110 111222222110
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCC------CcEE
Q 008787 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY 269 (553)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~~~~ 269 (553)
. ............++++++|+|||||||.||+|++||+++.+.+......+ .+.. ++++
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 0 00111233445778999999999999999999999999998888776665 4444 8999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHH
Q 008787 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (553)
Q Consensus 270 ~~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~ 343 (553)
++.+|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +..+|+++..++......
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~---------- 302 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD---------- 302 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc----------
Confidence 99999999999875 6778999999999862 899999999999999 889999988876421100
Q ss_pred HHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEeeecc
Q 008787 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL 417 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~i~~~YG~ 417 (553)
...... .+++||.+++||+++++++.+++.+.++ ..+++.||+
T Consensus 303 -----------------------~~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 303 -----------------------DDMAGR--------DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp -----------------------GGGTTC--------CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred -----------------------cccccc--------chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 001111 1248999999999999999999999874 369999999
Q ss_pred ccCCCceeeccCCC------------------------ccccCccCCCCCCeeEEEeecCCCCCCCCCCCCCCeEEEecC
Q 008787 418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 473 (553)
Q Consensus 418 tE~g~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~ 473 (553)
||++..++...... .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+||
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~ 428 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGD 428 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEEST
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCC
Confidence 99998777654332 123468999999 9999999 5433 4566789999999999
Q ss_pred CccccccCChhhhhhhc------------cCCccccCceEEEccCCcEEEEec
Q 008787 474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (553)
Q Consensus 474 ~~~~gy~~~~~~~~~~~------------~~g~~~TGD~g~~~~dG~l~~~GR 514 (553)
+++.||+++|+.|++.| .+|||+|||+|++| ||+|+|+||
T Consensus 429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999998 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=6.6e-41 Score=334.10 Aligned_cols=247 Identities=18% Similarity=0.138 Sum_probs=208.2
Q ss_pred CCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 008787 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (553)
Q Consensus 219 ~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~ 298 (553)
.+++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++++|++|.+|+...+.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 36889999999999999999999999999988877776 7889999999999999999988888899999988876
Q ss_pred CChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHHHHHHH
Q 008787 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (553)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (553)
.. ...++.++++++|++.++|+++..|++... ...++
T Consensus 111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l---- 147 (358)
T 4gs5_A 111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV---- 147 (358)
T ss_dssp CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred cc-ccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence 42 234678899999999999999998865211 00111
Q ss_pred HHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCceeeccCCCccccCccCCCCCCeeEEEeecCCCCCC
Q 008787 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (553)
Q Consensus 379 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~ 458 (553)
++||.+++||+++++++.+++++. ++++++.||+||++..++......... +++|.+.||+++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheeccccc-CceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 389999999999999999999874 999999999999998777665544333 7888999999887644
Q ss_pred CCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCCcEEEEecccCceecCCceeecchhHHHHH--
Q 008787 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (553)
Q Consensus 459 ~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~GR~~d~i~~~~G~~~~~~~iE~~l-- 536 (553)
.|||+++|+.. .+|||+|||+|++|+|| ++++||.||+|++ +|++|+|.|||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998632 37899999999999888 6677999999997 89999999999887
Q ss_pred -hcCcCcceEEEEe
Q 008787 537 -CVAPIIEDVSISY 549 (553)
Q Consensus 537 -~~~p~V~~~~V~g 549 (553)
..||.|.+|+|++
T Consensus 272 ~~~~p~V~~a~vv~ 285 (358)
T 4gs5_A 272 VFHHLNIGNAFFCW 285 (358)
T ss_dssp HHHHHTCCCCEEEE
T ss_pred hccCCCccEEEEEE
Confidence 4689999998873
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.6e-40 Score=339.20 Aligned_cols=273 Identities=17% Similarity=0.185 Sum_probs=220.6
Q ss_pred CCCC-CCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHH-HHHHHHHcCcE
Q 008787 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (553)
Q Consensus 216 ~~~~-~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~ 293 (553)
...+ +++++++|||||||.||+|++||+++.+.+..+...+.. .++..+|++++..|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 889999999999999999999999998776655333221 2678899999999987655554 46667899999
Q ss_pred EEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHH
Q 008787 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (553)
Q Consensus 294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (553)
+++.+. +++.+++.|+++++|+++++|+++..|++.+.......
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988765 99999999999999999999999999876543221000
Q ss_pred HHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCc-eeeccCCCccccCccCCCCCCeeEEEee
Q 008787 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE 451 (553)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~ 451 (553)
..+++|.+++||+++++++.+++++.||+++++.||+||+++. ........ ...|.+.+++.++|+|
T Consensus 204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~----~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQEQ----NGMHFWEDCYLVEIID 271 (436)
T ss_dssp --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTTC----SSEEECTTTEEEEEEC
T ss_pred --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCCC----CeeEEccCceEEEEEE
Confidence 0148999999999999999999999999999999999999654 33332211 2356777899999999
Q ss_pred cCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccCC------c---EEEEecccCceecC
Q 008787 452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS 522 (553)
Q Consensus 452 ~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~dG------~---l~~~GR~~d~i~~~ 522 (553)
++++ .++++|+.|||+|+|.. .+.+.++||+|||+|+++++| + +++.||.+|+|++
T Consensus 272 -~~~g-~~~~~g~~Gel~v~~~~------------~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~- 336 (436)
T 3qov_A 272 -PETG-EPVPEGEIGELVLTTLD------------REMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII- 336 (436)
T ss_dssp -TTTC-SBCSTTCCEEEEEEESS------------CCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred -CCCC-CCCCCCCceEEEEeccC------------cCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence 4333 55667899999999842 233568999999999999998 5 6999999999998
Q ss_pred CceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 523 QGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 523 ~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
+|++|+|.+||++|.+||+|.+++|++.++
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~ 366 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELGSNYLITLET 366 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEEEEEEEEEEE
T ss_pred CCEEECHHHHHHHHHhCcCcCCcEEEEEEc
Confidence 899999999999999999999999998753
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.6e-39 Score=334.47 Aligned_cols=274 Identities=19% Similarity=0.183 Sum_probs=220.0
Q ss_pred CCCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcE
Q 008787 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGAS 293 (553)
Q Consensus 215 ~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~ 293 (553)
....++++++++|||||||.||+|++||+++...+..+...+.. .++..+|++++.+|+ +|..++...+.++..|++
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 34567889999999999999999999999988766544332211 267889999999998 677777777778999999
Q ss_pred EEEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHH
Q 008787 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (553)
Q Consensus 294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (553)
+++.+. +++.+++.|+++++|+++++|+++..|++.........
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------------------------- 207 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP----------------------------------- 207 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 887766 99999999999999999999999999876433211000
Q ss_pred HHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCc-eeeccCCCccccCccCCCCCCeeEEEee
Q 008787 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE 451 (553)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~ 451 (553)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. .+....... ...+.+.+++.++|+|
T Consensus 208 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d 276 (437)
T 2y27_A 208 --------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID 276 (437)
T ss_dssp --------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC
T ss_pred --------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc
Confidence 0138999999999999999999998889999999999998443 333322111 1245677899999999
Q ss_pred cCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc-CCcE-----EEEecccCceecCCce
Q 008787 452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGE 525 (553)
Q Consensus 452 ~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~-dG~l-----~~~GR~~d~i~~~~G~ 525 (553)
++++ .++++|+.|||+|+|. +.+.|.++||+|||+|++++ ||++ ++.||.+|+|++ +|+
T Consensus 277 -~~~g-~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~ 341 (437)
T 2y27_A 277 -PETG-EVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGV 341 (437)
T ss_dssp -TTTC-CBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTE
T ss_pred -CCCC-CCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCe
Confidence 4432 5566789999999983 23345689999999999998 6985 899999999997 899
Q ss_pred eecchhHHHHHhcCcCcceEEEEecC
Q 008787 526 YVALEYLENVYCVAPIIEDVSISYSS 551 (553)
Q Consensus 526 ~~~~~~iE~~l~~~p~V~~~~V~g~~ 551 (553)
+|+|.+||++|.+||+|.+++|++.+
T Consensus 342 ~v~p~eiE~~l~~~p~V~~~~vv~~~ 367 (437)
T 2y27_A 342 NVFPTQIEEQLLKQRALAPHYQIVLT 367 (437)
T ss_dssp EECHHHHHHHHTTCTTBCSCCEEEEE
T ss_pred EECHHHHHHHHHhCcCcCccEEEEEe
Confidence 99999999999999999999988854
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3.2e-39 Score=332.78 Aligned_cols=273 Identities=17% Similarity=0.176 Sum_probs=218.9
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEE
Q 008787 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (553)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~~ 294 (553)
...++++++++|||||||.||+|++||+++......+...+.. .++..+|++++..|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 4567889999999999999999999999988766544332211 267889999999998 5677776677788899998
Q ss_pred EEecC-ChHHHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccCCcCCcchHHHHHH
Q 008787 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (553)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (553)
++.+. +++.+++.|+++++|+++++|+++..|++.........
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 209 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------ 209 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88766 99999999999999999999999999876433211000
Q ss_pred HHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCCCc-eeeccCCCccccCccCCCCCCeeEEEeec
Q 008787 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (553)
Q Consensus 374 ~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (553)
..+++|.+++||+++++++.+++++.+|+++++.||+||+++. ......... ...+.+.+++.++|+|
T Consensus 210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 278 (443)
T 2y4o_A 210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID- 278 (443)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence 0138999999999999999999999889999999999997443 333222111 1244567899999999
Q ss_pred CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC-CcE-----EEEecccCceecCCcee
Q 008787 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 526 (553)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d-G~l-----~~~GR~~d~i~~~~G~~ 526 (553)
++++ .++++|+.|||+|+|. +.+.|.++||+|||+|+++++ |++ ++.||.+|+|++ +|++
T Consensus 279 ~~~g-~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 279 PVTG-EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTTC-CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCCC-CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 4432 4566789999999983 223356899999999999999 987 899999999997 7999
Q ss_pred ecchhHHHHHhcCcCcceEEEEecC
Q 008787 527 VALEYLENVYCVAPIIEDVSISYSS 551 (553)
Q Consensus 527 ~~~~~iE~~l~~~p~V~~~~V~g~~ 551 (553)
|+|.+||++|.+||+|.+++|++.+
T Consensus 345 v~p~eiE~~l~~~p~V~~~~vv~~~ 369 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSGQFQITLS 369 (443)
T ss_dssp ECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEe
Confidence 9999999999999999999998864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=3.3e-28 Score=244.30 Aligned_cols=237 Identities=17% Similarity=0.158 Sum_probs=171.8
Q ss_pred CCCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEE
Q 008787 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (553)
Q Consensus 217 ~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~~~ 295 (553)
..++++++++|||||||.||+|.++|+++......+...+.. .++..+|++++.+|+ +|..|+...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999888754333221 257789999999999 99999888777788899433
Q ss_pred EecCChH-----------------------HHHHHhhhhcCcEEeechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 008787 296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (553)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
..+.++. .+++.++++++|+++++|+++..|++....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~-------------------- 225 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV-------------------- 225 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence 3333666 778899999999999999999998753211
Q ss_pred HHHHhccCCcCCcchHHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHH-Hhc-CCceEeeeccccCCCceeeccCC
Q 008787 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD 430 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~i~~~YG~tE~g~~~~~~~~~ 430 (553)
...++ +++|.+++||+++++++.+.++ +.| ++++++.||+||+++++..+..
T Consensus 226 -----------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 226 -----------------VLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp -----------------HHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred -----------------hcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 11112 2899999999999999999999 899 8999999999999876644321
Q ss_pred CccccCccCCC------CCCeeEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEc
Q 008787 431 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504 (553)
Q Consensus 431 ~~~~~~~~G~~------~~~~~v~i~~~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~ 504 (553)
.++|++ .|+++++|+| ++++ .++++|+.|||+|++..... + --+|+|||++...
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g-~~vp~G~~GEl~vt~l~~~~------------~-l~ry~tgD~~~~~ 339 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SITA-QTVEYGERGNVIVTHLSPWA------------F-YPRVAERDTAIRL 339 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTTC-SBCCTTCEEEEEEEEEETTE------------E-EEEEEEEEEEEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCCC-cCCCCCCceEEEEEEcCccc------------c-cccccCCceEEEe
Confidence 247888 9999999999 5232 46667899999999842211 1 1137899998875
Q ss_pred cC--C-------cEEEEecccCceec
Q 008787 505 PN--G-------VVKIIDRKKNLIKI 521 (553)
Q Consensus 505 ~d--G-------~l~~~GR~~d~i~~ 521 (553)
+. | .+..++|.++..++
T Consensus 340 ~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 340 PGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp CCSTTCSSCEEEEEEECC--------
T ss_pred cCCCCCcCcccccceeccccCCCcee
Confidence 43 2 23445666666655
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.80 E-value=2.3e-08 Score=103.02 Aligned_cols=134 Identities=18% Similarity=0.132 Sum_probs=82.3
Q ss_pred Cc---eeEEEEcCCCCCHHHHHHHHHhc-CCceE-eeeccccCCCceeeccCCCccccCccC-CCCCCe-eEEEeecCCC
Q 008787 383 GR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEM 455 (553)
Q Consensus 383 ~~---lr~i~~gG~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~~~~ 455 (553)
++ +..+++||. ..-...++..+ +.+++ ..|++||+ .++....+.. .+...+ ..+|+. -...++.++.
T Consensus 297 Pnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~~~~~ffEFip~~~~ 370 (581)
T 4eql_A 297 PNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLC--KPEDVSYTFMPNMSYFEFIPMDGG 370 (581)
T ss_dssp TTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTS--CGGGCCEEECTTSSEEEEEECSTT
T ss_pred CCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCC--CcccCceeecCCcEEEEEEecccc
Confidence 57 445555663 33334455544 67777 89999994 3333222211 111222 223333 1223331211
Q ss_pred -CC-----CCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc----CCcEEEEecccCceecCCce
Q 008787 456 -GY-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGE 525 (553)
Q Consensus 456 -~~-----~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~----dG~l~~~GR~~d~i~~~~G~ 525 (553)
.. ..+..|+.+||+++..+ |.|+ |++||+.++.. ..++.|+||.+++|++ .|+
T Consensus 371 ~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Ge 433 (581)
T 4eql_A 371 DKNDVVDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSD 433 (581)
T ss_dssp CCSSCEEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSC
T ss_pred CCCcEeCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eee
Confidence 11 12235688999998753 4333 89999999875 3589999999999997 799
Q ss_pred eecchhHHHHHhcC
Q 008787 526 YVALEYLENVYCVA 539 (553)
Q Consensus 526 ~~~~~~iE~~l~~~ 539 (553)
++++.+||++|.+.
T Consensus 434 kl~~~~v~~al~~a 447 (581)
T 4eql_A 434 KTNEEDLFKAVSQA 447 (581)
T ss_dssp CEEHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHH
Confidence 99999999999743
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.69 E-value=2.8e-07 Score=95.09 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=81.2
Q ss_pred Ccee---EEEEcCCCCCHHHHHHHHHhc-CCceE-eeeccccCCCceeeccCCCccccCccC-CCCCCee-EEEeecCCC
Q 008787 383 GRLR---LVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSE-LRLEEVPEM 455 (553)
Q Consensus 383 ~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~~-v~i~~~~~~ 455 (553)
+++| .+++||. ..-...++..+ +.+++ ..|++||+ .++....+.. .+...+ ..+|+.- ...++.++.
T Consensus 302 Pnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~~~~ 375 (609)
T 4b2g_A 302 PNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPMS--KPSEVSYTIMPNMAYFEFLPHEHS 375 (609)
T ss_dssp TTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCTTS--CGGGCCEEECTTSCEEEEEEGGGT
T ss_pred CCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeeecCCCC--CcccCceeecCCcEEEEEEecccc
Confidence 6754 4455663 23334455544 66766 89999995 3333222211 111222 2333331 223332211
Q ss_pred ------C-------CCCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEcc----CCcEEEEecccCc
Q 008787 456 ------G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNL 518 (553)
Q Consensus 456 ------~-------~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~----dG~l~~~GR~~d~ 518 (553)
. ...+..|+.+||+|+.. .|.|+ |++||+.+++. ...+.|+||.+++
T Consensus 376 ~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~ 439 (609)
T 4b2g_A 376 SIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVL 439 (609)
T ss_dssp TSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred ccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCe
Confidence 0 01234568899999764 35554 89999999873 4689999999999
Q ss_pred eecCCceeecchhHHHHHh
Q 008787 519 IKISQGEYVALEYLENVYC 537 (553)
Q Consensus 519 i~~~~G~~~~~~~iE~~l~ 537 (553)
|++ .|+++++.+||++|.
T Consensus 440 l~~-~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 440 LSI-DSDKTDEAELQKAVD 457 (609)
T ss_dssp BCS-SSCCBCHHHHHHHHH
T ss_pred EEc-cccCCCHHHHHHHHH
Confidence 997 799999999999996
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.52 E-value=9.1e-07 Score=90.96 Aligned_cols=137 Identities=20% Similarity=0.144 Sum_probs=81.5
Q ss_pred HhCCceeEE--EEcCCCCCHHHHHHHHHhc-CCceE-eeeccccCCCceeeccCCCccccCccC-CCCCCeeE-EEeecC
Q 008787 380 RLGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSEL-RLEEVP 453 (553)
Q Consensus 380 ~~~~~lr~i--~~gG~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~~v-~i~~~~ 453 (553)
++=+++++| +.+|. + ..-...++..+ +.+++ ..|++||+ .++....+.. .++..+ ..+|+... ..++.+
T Consensus 299 ~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~ 373 (581)
T 4epl_A 299 ALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL--SPEEATFAVIPNLGYFEFLPVS 373 (581)
T ss_dssp HHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTS--CTTTCCEEECTTSCEEEEEEC-
T ss_pred HhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCC--CccccceeecCCcEEEEEEecc
Confidence 344788643 23342 2 22334555555 66776 99999994 3333222211 111122 23333311 222211
Q ss_pred CC-C----C---CCCCCCCCCeEEEecCCccccccCChhhhhhhccCCccccCceEEEccC----CcEEEEecccCceec
Q 008787 454 EM-G----Y---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKI 521 (553)
Q Consensus 454 ~~-~----~---~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~g~~~~d----G~l~~~GR~~d~i~~ 521 (553)
+. . . ..+..|+.+||+++... |.|+ |++||+.++..- ..+.|+||.+++|++
T Consensus 374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp ------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred cccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 11 1 0 12345688999998753 4333 899999998642 579999999999998
Q ss_pred CCceeecchhHHHHHhc
Q 008787 522 SQGEYVALEYLENVYCV 538 (553)
Q Consensus 522 ~~G~~~~~~~iE~~l~~ 538 (553)
.|+++++.+||++|.+
T Consensus 438 -~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 438 -NIDKNTERDLQLSVES 453 (581)
T ss_dssp -SSCCBCHHHHHHHHHH
T ss_pred -eeeECCHHHHHHHHHH
Confidence 7999999999999964
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.24 E-value=5.3e-07 Score=72.20 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=36.1
Q ss_pred ecccCceecCCceeecchhHHHHHhcCcCcceEEEEecCC
Q 008787 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSSV 552 (553)
Q Consensus 513 GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~~ 552 (553)
.|.||||++ +|.+++|.+||++|.+||+|.+++|+|.++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~ 39 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLET 39 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEE
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEec
Confidence 389999998 799999999999999999999999998763
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.09 E-value=1.6e-06 Score=69.26 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=35.7
Q ss_pred ecccCceecCCceeecchhHHHHHhcCcCcceEEEEecC
Q 008787 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDVSISYSS 551 (553)
Q Consensus 513 GR~~d~i~~~~G~~~~~~~iE~~l~~~p~V~~~~V~g~~ 551 (553)
||.+|+|++ +|.+++|.+||++|.+||+|.++++++.+
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~ 38 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLE 38 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEE
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEE
Confidence 899999998 89999999999999999999999888765
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=93.14 E-value=0.93 Score=45.27 Aligned_cols=114 Identities=9% Similarity=-0.053 Sum_probs=86.0
Q ss_pred CCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeeCCCCCChhHHHHH
Q 008787 68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLYDTLGPGAVNFI 143 (553)
Q Consensus 68 d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 143 (553)
.|.+|..+ .+|...+...+..++..+...|+.++|++....+-+ ...+..+++++..|+.+++.+. ..++.+...
T Consensus 95 SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~ 173 (436)
T 3qov_A 95 SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKF 173 (436)
T ss_dssp SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHH
T ss_pred CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHH
Confidence 56666654 679999998888888888888999999999988743 3445567888999999887754 467889999
Q ss_pred HhhcCceEEEEcchhhhhhhccccc-----cccCccEEEEecCC
Q 008787 144 LDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (553)
Q Consensus 144 l~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 182 (553)
+++.++.+++..+.....+.+.... ....++.++.-++.
T Consensus 174 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 174 ISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp HHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred HHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 9999999999988877666543211 13456676666654
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.00 E-value=1.2 Score=44.49 Aligned_cols=124 Identities=14% Similarity=0.053 Sum_probs=89.0
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeeC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 131 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l 131 (553)
++.++.+.. ..|.+|..+ .+|...+...+..++..+...|+.++|++....+-. ...+...++++..|+.++++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455554432 155666554 678999988888888888788999999999988853 34455678889999998877
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccc-----cccCccEEEEecCC
Q 008787 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (553)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 182 (553)
+. .+++.+...+++.++.+++..+.....+.+.... ....++.++.-++.
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 65 4788899999999999999988877666543211 12456666666554
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.97 E-value=1.2 Score=44.62 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=89.0
Q ss_pred CCCCcee-eecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEee
Q 008787 56 PGNRMLG-WRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (553)
Q Consensus 56 p~~~al~-~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~ 130 (553)
++.++.+ +- .|.+|..+ .+|...+...+..++..+...|+.++|++...++-+ ...+...++++..|+.+++
T Consensus 91 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 91 REQVVRVHAS---SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp GGGCCEEEEE---CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred hhheEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 3445533 33 56677665 568899888888888878788999999999988853 3345567888899999887
Q ss_pred CCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccc-----cccCccEEEEecCC
Q 008787 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (553)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 182 (553)
++.. +.+.+...+++.++.+++..+.....+.+.... ....++.++.-++.
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 7654 788899999999999999888876665443211 12456666666554
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=87.99 E-value=7 Score=39.58 Aligned_cols=122 Identities=7% Similarity=0.009 Sum_probs=85.3
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeC
Q 008787 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (553)
Q Consensus 55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l 131 (553)
.|+.+|++.. -.|.+|..| .+|...+...+..+.. ..++.++|++...+|-.-.+ +..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4566665543 145666554 6788888776655543 34889999998888765332 33467888899998877
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCC
Q 008787 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (553)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (553)
+ ..+++.+...+++.++.+++..+.....+.+........++.++.-++.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 4688999999999999999999888777655443333356666665544
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=87.25 E-value=3.1 Score=40.27 Aligned_cols=123 Identities=13% Similarity=0.026 Sum_probs=78.7
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeeC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 131 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l 131 (553)
++.++.+.. ..|.+|..+ .+|...+...+..++..+...|+.++|++...+|-+ .--+...++++..|+.+++.
T Consensus 90 ~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 90 ADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp TTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred ccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 455554433 156677665 558888888777766677777999999999988862 22334455568899855543
Q ss_pred CCCCChh-----------------------HHHHHHhhcCceEEEEcchhhhhhhcccc---ccccCccEEEEecCC
Q 008787 132 YDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (553)
Q Consensus 132 ~~~~~~~-----------------------~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 182 (553)
..++. .+..++++.++.+++..+.....+.+... .....++.++.-++.
T Consensus 168 --~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 168 --DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTE 242 (369)
T ss_dssp --CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred --cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCcc
Confidence 33444 66668999999999998887766654421 222455666655543
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=82.91 E-value=17 Score=37.05 Aligned_cols=122 Identities=7% Similarity=-0.081 Sum_probs=83.9
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HH-HHHHHHhcCCEEe
Q 008787 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (553)
Q Consensus 55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~--~~-~~lA~~~~G~~~v 129 (553)
.|+.+|++.. -.|.+|..| .+|...+...+..... ..++.++|++...+|-+-.+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4566665543 145555554 6788888776655544 34788999998888865433 32 4788899999988
Q ss_pred eCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc---cccccCccEEEEecCC
Q 008787 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 130 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 182 (553)
..+ ..+++.+...+++.++.+++..+.....+.+.. ......++.++.-++.
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 765 467888999999999999998887766654432 2234566666666554
No 48
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=82.35 E-value=6.2 Score=38.01 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=82.7
Q ss_pred cccHHHHHHHHHHcCCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHH
Q 008787 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEA 117 (553)
Q Consensus 41 ~~~l~~~l~~~a~~~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~-~~~~ 117 (553)
.....+.+..|.. |.+|++.. -.|.+|..| .+|.+.+...+..++. ..++.++|++...+|-+-. .+..
T Consensus 24 ~~~~~~~~~~w~~---d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~ 95 (358)
T 4gs5_A 24 FAQAYDFMEKWLG---GAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMM 95 (358)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHH
T ss_pred ccchhhHhhccCC---CCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHH
Confidence 3445556665543 55555432 156777765 7899888776655544 3488999999988876533 2444
Q ss_pred HHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc--cccccCccEEEEecCC
Q 008787 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD--CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 182 (553)
++..+..|+..+...+.... ...+++.++..+...+.....+.+.. ......++.++.-+..
T Consensus 96 ~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~ 159 (358)
T 4gs5_A 96 LVRGMELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAP 159 (358)
T ss_dssp HHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSC
T ss_pred HHHHHHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccC
Confidence 56667788887777654332 34678889999988887766654432 2234556666665544
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=80.19 E-value=17 Score=37.27 Aligned_cols=121 Identities=11% Similarity=-0.036 Sum_probs=82.2
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhcCCEEee
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP 130 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~ 130 (553)
++.+|++.. -.|.+|..| .+|...+...+..++.. .++.++|++...+|-...+-. .+++++..|+..+.
T Consensus 190 ~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 190 ADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp TTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred ccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 455665543 145566554 67888887776665543 488999999998876544332 47888899999887
Q ss_pred CCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc---cccccCccEEEEecCC
Q 008787 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 182 (553)
.+. ..+..+...+++.++..++..+.....+.+.. ......++.++.-++.
T Consensus 265 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 265 APN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred CCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 654 57888889999999999999887766554432 2233566666666554
No 50
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=78.85 E-value=12 Score=38.33 Aligned_cols=122 Identities=11% Similarity=-0.023 Sum_probs=82.2
Q ss_pred CCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHhcCCEEeeCC
Q 008787 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY 132 (553)
Q Consensus 57 ~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~--~~~~lA~~~~G~~~v~l~ 132 (553)
+.+|++.. -.|.+|..| .+|...+...+......+...++.++|++...+|-.-.+ ...+++++ .|+..+.++
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 55665543 145555443 688988877666554443335788999988887765433 33456777 999988775
Q ss_pred CCCChhHHHHHHhhcCceEEEEcchhhhhhhcccc---ccccCccEEEEecCC
Q 008787 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (553)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 182 (553)
..+++.+...+++.++.+++..+.....+.+... .....++.++.-++.
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 5678899999999999999998887776654321 123456666665544
No 51
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=76.21 E-value=16 Score=38.10 Aligned_cols=122 Identities=13% Similarity=0.021 Sum_probs=86.1
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeCC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~ 132 (553)
|+.+|++.. -.|.+|..| .+|...+...+. .....++.++|+++..++-+-+. +..+++.+..|+.++..+
T Consensus 163 ~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~ 236 (620)
T 4dg8_A 163 ADQIAYINF--SSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLND 236 (620)
T ss_dssp TTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECC
T ss_pred CCCeEEEEE--CCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCc
Confidence 566665443 156677665 677776644332 22335889999999988876554 345788899999888763
Q ss_pred -CCCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCc
Q 008787 133 -DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (553)
Q Consensus 133 -~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (553)
...+++.+..++++.++..++..+.....+.+........++.++.-++.-
T Consensus 237 ~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l 288 (620)
T 4dg8_A 237 LGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDIL 288 (620)
T ss_dssp SSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred cccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcC
Confidence 356788899999999999999988877776655455556777777776653
No 52
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=75.94 E-value=27 Score=35.32 Aligned_cols=120 Identities=8% Similarity=-0.089 Sum_probs=78.6
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHhcCCEEeeC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVPL 131 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~l 131 (553)
|+.+|++.. -.|.+|..| .+|...+...+..++.. .++.++|++...+|-.-.+-. .+++++ .|+..+.+
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 345554433 156666655 67888887776665544 488999999988887644333 245555 88888876
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc---cccccCccEEEEecCC
Q 008787 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 182 (553)
+ ...+..+...+++.++.++...+.....+.... ....+.++.++.-++.
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP 295 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCC
Confidence 4 578889999999999999999888766654432 1233456666665554
No 53
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=73.38 E-value=14 Score=38.12 Aligned_cols=123 Identities=9% Similarity=-0.011 Sum_probs=86.4
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch-hHHHHHHHHHhcCCEEeeC
Q 008787 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPL 131 (553)
Q Consensus 55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~-~~~~~~lA~~~~G~~~v~l 131 (553)
.|+.+|++.. -.|.+|..| .+|...+...... ....++.++|+++..+|-+. -+...+++++..|+.++.+
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4566665543 145555554 6788776433221 22348899999998888753 3455678888999988877
Q ss_pred CC-CCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCc
Q 008787 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (553)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (553)
+. ...+..+...+++.++.++...+.....+.+........++.++.-++.-
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l 338 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPA 338 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccC
Confidence 64 46778899999999999999998887777665555667777777776653
No 54
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=73.01 E-value=17 Score=36.68 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=81.1
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEeCCchhHH--HHHHHHHhcCCEE
Q 008787 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGA--EPGCRVGIYGANCPQWV--EAMEACNALSLIC 128 (553)
Q Consensus 55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl--~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~ 128 (553)
.|+.+|++.. -.|.+|..| .+|...+...+..+.. ..++ .++|++...+|-.-.+- ..+++++..|+..
T Consensus 151 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFY--TSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEE--CCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 4566666544 145566554 6788887766555433 3477 78888888877654432 3578889999998
Q ss_pred eeCCCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc-----cccccCccEEEEecCC
Q 008787 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-----CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 129 v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 182 (553)
+..+. ..+..+...+++.++.+++..+.....+.+.. ......++.++.-++.
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~ 283 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT 283 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTT
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCc
Confidence 87754 67888899999999999999888777665432 1123556666665554
No 55
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=72.34 E-value=42 Score=34.84 Aligned_cols=122 Identities=10% Similarity=-0.062 Sum_probs=82.9
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHH-HHHHHHhcCCEEee
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVE-AMEACNALSLICVP 130 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~--~~~-~~lA~~~~G~~~v~ 130 (553)
|+.+|++.. -.|.+|..| .+|...+...+...... .++.++|++...+|-+.. ... .+++++..|+..+.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 455655443 155666554 67888887666655443 478899999998885433 332 47888889999887
Q ss_pred CCCCCChhHHHHHHhhcCceEEEEcchhhhhhhcccc-----ccccCccEEEEecCCc
Q 008787 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSLT 183 (553)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 183 (553)
.+. .+...+...+++.++.++...+.....+.+... .....++.++.-++.-
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l 314 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARL 314 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcC
Confidence 654 577788889999999999998877665544321 1345667777666553
No 56
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=72.04 E-value=24 Score=36.38 Aligned_cols=123 Identities=2% Similarity=-0.200 Sum_probs=83.3
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHhcCCEEee
Q 008787 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVP 130 (553)
Q Consensus 55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~ 130 (553)
.|+.+|++.. -.|.+|..| .+|...+...+..+.. ..++.++|++...+|-.-.+-. .+++++..|+..+.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 3566666544 145566554 6899888877666544 4588999999998887755433 37888999999888
Q ss_pred CCCCC---ChhHHHHHHhhcCceEEEEcchhhhhhhccc------cccccCccEEEEecCC
Q 008787 131 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPD------CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 131 l~~~~---~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 182 (553)
+++.. .+..+...+++.++.++.........+.+.. ......++.++.-+..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 76532 5677888999999999988776655443321 1123456666665554
No 57
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=71.69 E-value=26 Score=35.33 Aligned_cols=122 Identities=8% Similarity=-0.109 Sum_probs=82.8
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeCC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~ 132 (553)
++.+|++.. -.|.+|..| .+|...+...+..+.. ..++.++|++...+|-+..+ +..+++++..|+..+.++
T Consensus 142 ~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 216 (511)
T 3e7w_A 142 EHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT 216 (511)
T ss_dssp TTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 455555433 156677665 6788887766554443 45788999999988876443 345788899999988775
Q ss_pred CC--CChhHHHHHHhhcCceEEEEcchhhhhhhccc---cccccCccEEEEecCC
Q 008787 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 182 (553)
.. ..+..+...+++.++.+++..+.....+.... ......++.++.-++.
T Consensus 217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 217 KDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp HHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred hhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 43 46778889999999999999888776654432 2223455666655544
No 58
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=70.57 E-value=24 Score=36.11 Aligned_cols=123 Identities=7% Similarity=-0.074 Sum_probs=80.0
Q ss_pred CCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeCCC
Q 008787 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLYD 133 (553)
Q Consensus 57 ~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 133 (553)
+.+|++.. -.|.+|..| .+|...+...+......+...++.++|++...+|-.-.+ +...++++..|+..+.++
T Consensus 190 ~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 190 KTIALIMN--SSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TSEEEEEE--C-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCEEEEEE--CCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 44555443 145555554 678887776655544433335788999998888765432 345677788999988774
Q ss_pred CCChhHHHHHHhhcCceEEEEcchhhhhhhcccc---ccccCccEEEEecCC
Q 008787 134 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (553)
Q Consensus 134 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 182 (553)
..+++.+...+++.++..++..+.....+.+... .....++.++.-++.
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 5678889999999999999998887766654322 223566666666554
No 59
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=70.28 E-value=22 Score=35.88 Aligned_cols=122 Identities=9% Similarity=-0.052 Sum_probs=80.3
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeCC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~ 132 (553)
++.+|++.. -.|.+|..| .+|...+...+..... ..++.++|++...+|-+-.+ +..+++++..|+..+.++
T Consensus 143 ~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 143 GDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217 (512)
T ss_dssp TTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECC
Confidence 455554443 155666655 6788888766554443 45889999999988866433 445788899999988876
Q ss_pred CC--CChhHHHHHHhhcCceEEEEcchhhhhhhccc---cccccCccEEEEecCC
Q 008787 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 182 (553)
.. .++..+...+++.++.+++..+.....+.... ....+.++.++.-++.
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 53 46778889999999999998888776554332 2223456666665554
No 60
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=67.24 E-value=21 Score=36.41 Aligned_cols=123 Identities=12% Similarity=-0.083 Sum_probs=81.2
Q ss_pred CCCCcee-eecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhcCCEEeeC
Q 008787 56 PGNRMLG-WRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (553)
Q Consensus 56 p~~~al~-~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~-~~~lA~~~~G~~~v~l 131 (553)
++.+|++ +- .|.+|..| .+|...+...+.... .....++.++|++...+|-.-.+- ..+++++..|+..+..
T Consensus 175 ~~~~a~i~~T---SGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~ 250 (541)
T 1v25_A 175 ERAACGMAYT---TGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 250 (541)
T ss_dssp TTSEEEEEEE---CSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred CCCcEEEEEC---CCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEee
Confidence 4555544 33 56677665 568877754433211 112347889999988887643332 2457778899999888
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhhhhhhcccc---ccccCccEEEEecCC
Q 008787 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (553)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 182 (553)
+...+++.+...+++.++.+++..+.....+.+... .....++.+++-++.
T Consensus 251 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 304 (541)
T 1v25_A 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSA 304 (541)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSC
T ss_pred CCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCC
Confidence 766789999999999999999998877666544321 233566666665554
No 61
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=66.85 E-value=69 Score=32.13 Aligned_cols=121 Identities=7% Similarity=-0.104 Sum_probs=75.1
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhcCCEEeeC
Q 008787 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (553)
Q Consensus 55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~-~~~lA~~~~G~~~v~l 131 (553)
.++.+|++.. -.|.+|..| .+|...+...+..+.. ..++.++|++...+|-.-.+- ...+.+...|+..+.+
T Consensus 158 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIH--TAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEE--EEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEe--CCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 3455554433 156677665 6788888776665544 348899999998888654432 2334434444444444
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhhhhhhccc-cccccCccEEEEecC
Q 008787 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-CRSAQRLRVMVCFTS 181 (553)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 181 (553)
. ..+++.+...+++.++.+++..+.....+.+.. ......++.++..+.
T Consensus 233 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 233 A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDT 282 (509)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECC
T ss_pred c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCC
Confidence 4 678899999999999999988887766664432 223345555554443
No 62
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=64.30 E-value=35 Score=35.10 Aligned_cols=122 Identities=11% Similarity=-0.061 Sum_probs=80.2
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEeeC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~l 131 (553)
|+.+|++.. -.|.+|..| .+|.. +...... ......++.++|++...+|-+-.+- ..+++.+..|+..+..
T Consensus 205 ~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 279 (570)
T 3c5e_A 205 SQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH 279 (570)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred CCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence 455555543 145666555 66777 4331111 1123458899999988887765443 3467888899988877
Q ss_pred CC-CCChhHHHHHHhhcCceEEEEcchhhhhhhcccc--ccccCccEEEEecCC
Q 008787 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSL 182 (553)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 182 (553)
+. ..++..+...++..++.+++..+.....+.+... .....++.++..++.
T Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp CCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred cCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 54 6788899999999999999999887777655321 123556666666554
No 63
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=63.89 E-value=67 Score=32.66 Aligned_cols=107 Identities=9% Similarity=-0.062 Sum_probs=76.0
Q ss_pred CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 008787 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (553)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~ 297 (553)
.++.++++....+..+ -..-.+|.+.+...+..+...+... ++.++|++...++-.. -.....+.++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEcc
Confidence 3456776655322111 1124689998988888877766443 6789999988887653 2334566678889998877
Q ss_pred cC--ChHHHHHHhhhhcCcEEeechHHHHHHHH
Q 008787 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (553)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (553)
+. ..+.+...++..++.+++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 65 78899999999999999998887766543
No 64
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=62.47 E-value=40 Score=35.29 Aligned_cols=124 Identities=9% Similarity=0.006 Sum_probs=82.2
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEeeC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~l 131 (553)
++.++++.. -.|.+|..| .+|.+.+........ -...+++++|++....+-+...- ..+++.+..|+..+..
T Consensus 255 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILY--TSGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEE--ECCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEe--ccCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 445554433 156677666 567766654332211 12357899999888877665443 3467899999999887
Q ss_pred CCC---CChhHHHHHHhhcCceEEEEcchhhhhhhcccc-----ccccCccEEEEecCCc
Q 008787 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSLT 183 (553)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 183 (553)
+.. .+++.+..++++.++.++++.+.....+.+... .....++.++..++.-
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l 390 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPI 390 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCC
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCC
Confidence 642 467889999999999999999887776655332 2345677777766553
No 65
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=61.72 E-value=48 Score=33.62 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 008787 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (553)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~ 297 (553)
.++.++++... +| -.+|.+.+...+..+...+... ++.++|++...++-.. -.....+.++..|+..+..
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKI--GIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 45667765422 22 4589999988888877776443 6788999988887753 3334566678889988877
Q ss_pred cC--ChHHHHHHhhhhcCcEEeechHHHHHHHH
Q 008787 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (553)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (553)
+. ..+.+...++..++.+++........+.+
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 65 88899999999999999998877766544
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=58.15 E-value=57 Score=34.20 Aligned_cols=123 Identities=10% Similarity=-0.070 Sum_probs=79.9
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEeeC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~l 131 (553)
++.++++.. -.|.+|..| .+|.+.+...+.... -...++.++|++....+-+...- ..+++.+..|+..+..
T Consensus 261 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~ 336 (663)
T 1ry2_A 261 SEDPLFLLY--TSGSTGAPKGVQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF 336 (663)
T ss_dssp TTSCCEEEE--ECCSSSSCEEEEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred CCCceEEEe--ccCCCCCCceEEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence 455555443 156677766 456665543332211 12358899999888777654432 3467889999998887
Q ss_pred CCC---CChhHHHHHHhhcCceEEEEcchhhhhhhcccc-----ccccCccEEEEecCC
Q 008787 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 182 (553)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 182 (553)
+.. .+++.+..++++.++.++++.+.....+.+... .....++.++..++.
T Consensus 337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 395 (663)
T 1ry2_A 337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP 395 (663)
T ss_dssp CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSC
T ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCC
Confidence 642 467889999999999999999887776654332 233566666666654
No 67
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=57.38 E-value=42 Score=34.59 Aligned_cols=122 Identities=9% Similarity=-0.113 Sum_probs=78.8
Q ss_pred CCCCceeeecccCCCCCCceEe--eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHhcCCEEeeC
Q 008787 56 PGNRMLGWRPFVDGKFGPYVWK--TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVPL 131 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~~~--Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~l 131 (553)
++.+|++.. -.|.+|..|-+ |...+... +.......++.+++++....+....... .+++.+..|+.+++.
T Consensus 224 ~~d~a~i~~--TSGTTG~PKgV~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 298 (580)
T 3etc_A 224 NEDICLVYF--SSGTAGFPKMVEHDNTYPLGH---ILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVY 298 (580)
T ss_dssp TTSEEEEEE--ECCSSSSCEEEEEETTHHHHH---HHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCcEEEEE--eCCCCCCccEEEeccHHHHHH---HHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEe
Confidence 455554432 16777777754 44322222 1222223488899998888776654333 478889999998877
Q ss_pred C-CCCChhHHHHHHhhcCceEEEEcchhhhhhhcccc--ccccCccEEEEecCC
Q 008787 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSL 182 (553)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 182 (553)
+ ....++.+-..+++.++..++..+.....+..... .....++.++.-++.
T Consensus 299 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~ 352 (580)
T 3etc_A 299 DYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEP 352 (580)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSC
T ss_pred cCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCC
Confidence 5 56788899999999999999998887766654321 123456666666554
No 68
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=56.70 E-value=42 Score=31.75 Aligned_cols=66 Identities=8% Similarity=-0.020 Sum_probs=47.2
Q ss_pred HHHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 92 ALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 92 ~L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
.+.+.| +++|++|.+....+-.-..+.++|...|..++.+-|...+..-..+++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 334455 488988655555566666777788888988776666655556677888999999999764
No 69
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=56.09 E-value=56 Score=32.84 Aligned_cols=103 Identities=10% Similarity=-0.095 Sum_probs=71.8
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHhcCCEEee
Q 008787 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 130 (553)
Q Consensus 55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~ 130 (553)
.|+.+|++.. -.|.+|..| .+|...+...+..+...+ ++.++|++...+|-.-. ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3555665443 156666665 678888887777665544 78899998887775432 23457888999999887
Q ss_pred CCCCCChhHHHHHHhhcCceEEEEcchhhhhhhc
Q 008787 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (553)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 164 (553)
.+ ...++.+...+ ..++..++..+.....+.+
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 74 46677777777 6789999888877665544
No 70
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=54.52 E-value=1.1e+02 Score=30.32 Aligned_cols=107 Identities=12% Similarity=-0.000 Sum_probs=75.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 008787 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (553)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~ 297 (553)
.++.++++.........-....+|.+.+...+..+...+... +. ++|++...++-.. --+...+.++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEee
Confidence 456777766543211112346799999999988888877544 33 7888888777653 2334566778889988776
Q ss_pred cC-----ChHHHHHHhhhhcCcEEeechHHHHHHHH
Q 008787 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (553)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (553)
.. ..+++...++..++.+++..+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 43 56889999999999999998887766544
No 71
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=53.45 E-value=76 Score=32.32 Aligned_cols=114 Identities=6% Similarity=-0.157 Sum_probs=76.7
Q ss_pred CCCCCCce--EeeHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeCCCCCChhH
Q 008787 68 DGKFGPYV--WKTYKEVYEEVLQIVSALR-----ASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLYDTLGPGA 139 (553)
Q Consensus 68 d~~~~~~~--~~Ty~el~~~v~~la~~L~-----~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~ 139 (553)
.|.+|..| .+|...+...+..++..+. ...+...+++....+...+. +..++..+..|+..+........+.
T Consensus 184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 263 (562)
T 3ite_A 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD 263 (562)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence 56666665 6799999888887777654 23567788888777766543 3447778889988877654434466
Q ss_pred HHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCC
Q 008787 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (553)
Q Consensus 140 l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (553)
+...+++.++.+++..+.....+.. .......++.++.-+..
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~~-~~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTGL-VPEDAPHLVYLGVGGEK 305 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHTC-CGGGSTTCCEEEEESSC
T ss_pred HHHHHHHcCCCEEEcCHHHHhhccc-CccccCceEEEEEecCC
Confidence 7788999999999988876655422 23344566776666554
No 72
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=51.86 E-value=38 Score=38.98 Aligned_cols=123 Identities=9% Similarity=-0.049 Sum_probs=84.8
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhcCCEEeeC
Q 008787 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (553)
Q Consensus 55 ~p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~-~~~lA~~~~G~~~v~l 131 (553)
.|+.+|++.. -.|.+|..| .+|.+.+... .......++.++|+++...+-+.+.. .-+++.+..|+..+..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 3566655443 156777665 6787776532 22222348889999998888776644 4478888999998887
Q ss_pred CC--CCChhHHHHHHhhcCceEEEEcchhhhhhhccccccccCccEEEEecCCc
Q 008787 132 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (553)
Q Consensus 132 ~~--~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (553)
++ ..++..+...+++.++.+++..+.....+.+........++.+++-++..
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERA 732 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCC
Confidence 65 35778899999999999999888877666543333345677777766653
No 73
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=50.56 E-value=1.1e+02 Score=31.33 Aligned_cols=84 Identities=7% Similarity=-0.079 Sum_probs=64.3
Q ss_pred EEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcE
Q 008787 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (553)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (553)
-.+|.+.+...+..+...+... ++.++|++...++-.. -.....+.++..|+..+..+. ..+.+...++..++.+
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~ 139 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEK--GIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARM 139 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred ceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCE
Confidence 3689999988887777666433 6788999988887653 233456667888998887765 7889999999999999
Q ss_pred EeechHHHH
Q 008787 316 LAGVPRVFE 324 (553)
Q Consensus 316 l~~~p~~~~ 324 (553)
++..+....
T Consensus 140 li~~~~~~~ 148 (563)
T 1amu_A 140 LLTQKHLVH 148 (563)
T ss_dssp EEECGGGHH
T ss_pred EEEcCchhh
Confidence 998876543
No 74
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=46.96 E-value=52 Score=31.03 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCCCCCEEEEEeCCch------hHHH-HHHHHHhcCCEEeeCCCCC------------ChhHHHHHHhhcCceEEEEcch
Q 008787 97 GAEPGCRVGIYGANCP------QWVE-AMEACNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 97 gl~~gd~V~l~~~n~~------~~~~-~~lA~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
-+++||+|+|++|.+. +.+- +.--+-..|..++.-+... .++++..++.+-++++|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4799999999999853 2222 2222345688877654222 2456888899999999999764
No 75
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=46.89 E-value=1.4e+02 Score=29.81 Aligned_cols=124 Identities=7% Similarity=-0.130 Sum_probs=77.0
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeeCC
Q 008787 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (553)
Q Consensus 56 p~~~al~~~~~~d~~~~~~~--~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~ 132 (553)
++.+|++.. -.|.+|..| .+|...+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.++
T Consensus 144 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 220 (521)
T 3l8c_A 144 GDDNYYIIF--TSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALP 220 (521)
T ss_dssp TTSEEEEEE--CCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCcEEEEE--cCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 345555443 145555544 678888876554333221 24678888888777665443 445778888999988776
Q ss_pred CC--CChhHHHHHHhhcCceEEEEcchhhhhhhccc---cccccCccEEEEecCC
Q 008787 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (553)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 182 (553)
.. .....+...+...++.++...+.....+.... ....+.++.++.-+..
T Consensus 221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~ 275 (521)
T 3l8c_A 221 KELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEE 275 (521)
T ss_dssp GGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEeccc
Confidence 54 36678889999999999998887665543322 2233456666655544
No 76
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=45.65 E-value=71 Score=32.23 Aligned_cols=87 Identities=7% Similarity=-0.118 Sum_probs=66.7
Q ss_pred EEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcE
Q 008787 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (553)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (553)
..+|...+...+..+...+... ++.++|++...++-..- .....+.++..|+..+..+. .++.+...++..++..
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 123 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTL--GVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARA 123 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred CCccHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeE
Confidence 3589999988888877766433 67889999888876532 23446667888998887765 7889999999999999
Q ss_pred EeechHHHHHHH
Q 008787 316 LAGVPRVFEKIH 327 (553)
Q Consensus 316 l~~~p~~~~~l~ 327 (553)
++..+.....+.
T Consensus 124 vi~~~~~~~~~~ 135 (529)
T 2v7b_A 124 VIASGALVQNVT 135 (529)
T ss_dssp EEEEGGGHHHHH
T ss_pred EEechhhhhHHH
Confidence 999887765543
No 77
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=45.02 E-value=87 Score=29.66 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=49.8
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 94 ~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
.+.| +++|.+..+....+-.-....++|.++|..+..+-|...+..-...++..++++++++..
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444 678876666766677777788889999998887777777777788899999999998754
No 78
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=43.63 E-value=66 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHH-HHhcCCEEeeCCCCC------------ChhHHHHHHhhcCceEEEEcch
Q 008787 97 GAEPGCRVGIYGANCPQ------WVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 97 gl~~gd~V~l~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
-+++||+|+|++|.+.- .+-.... +-..|..++.-+... ..+++..++.+-++++|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 57999999999999832 2222232 334788877643211 2346888888889999999764
No 79
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=42.55 E-value=72 Score=31.97 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=66.0
Q ss_pred EeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChHHHHHHhhhhcCcEE
Q 008787 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLL 316 (553)
Q Consensus 239 ~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~~i~~~~~t~l 316 (553)
.+|.+.+...+..+...+... ++.++|++...++-.. -.....+.++..|+..+..+. ..+.+...++..++.++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 589999988888877766443 6788999988887663 333456677888998887765 78899999999999999
Q ss_pred eechHHHHHH
Q 008787 317 AGVPRVFEKI 326 (553)
Q Consensus 317 ~~~p~~~~~l 326 (553)
+..+.....+
T Consensus 105 i~~~~~~~~~ 114 (503)
T 4fuq_A 105 VCDPSKRDGI 114 (503)
T ss_dssp EECGGGTTTT
T ss_pred EECchhhHHH
Confidence 9987765443
No 80
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=42.24 E-value=69 Score=30.79 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHH-HHhcCCEEeeCCCCC------------ChhHHHHHHhhcCceEEEEcch
Q 008787 97 GAEPGCRVGIYGANCPQ------WVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 97 gl~~gd~V~l~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
-+++||+|+|++|.+.- .+-.... +-..|..++.-+... ..+++..++.+-++++|++...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 58999999999999742 2222232 334788887653221 2346888888889999999764
No 81
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=39.76 E-value=75 Score=29.97 Aligned_cols=61 Identities=5% Similarity=0.011 Sum_probs=41.9
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHH-HHhcCCEEeeCCCCC------------ChhHHHHHHhhcCceEEEEcch
Q 008787 97 GAEPGCRVGIYGANCPQ------WVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 97 gl~~gd~V~l~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
-+++||+|+|++|.+.- .+-.... +-..|..++.-+... ..+++..++.+-++++|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999998752 2222233 334788887654221 2356888888889999999764
No 82
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=39.14 E-value=67 Score=35.54 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=73.3
Q ss_pred CCCCeEEEEecCCCCCCCceEEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 008787 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (553)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~ 297 (553)
.++.++++... +| -.+|...+...+..+...+... ++.++|++...++-.. --+...+.++..|+..+..
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKL--GVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHc--CCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 46677766422 22 4689999988888877766443 6789999988888763 3334566778889998877
Q ss_pred cC--ChHHHHHHhhhhcCcEEeechHHHHHH
Q 008787 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (553)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (553)
+. .++.+...++..++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 65 788999999999999999987665544
No 83
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=38.59 E-value=1.2e+02 Score=26.49 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCcEEEEecC---ChHHHHHHhhhhcCcEEee------chHH--HHHHHHHHHHHHHhhchHHHHHH
Q 008787 277 HILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAG------VPRV--FEKIHEGIKKALEELRPLRRRIF 345 (553)
Q Consensus 277 ~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~~i~~~~~t~l~~------~p~~--~~~l~~~~~~~~~~~~~~~~~~~ 345 (553)
|..|..+....+...+-=++.-+ .++.+++.+++++++++.. ++.. +..+++.++..
T Consensus 105 HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~------------ 172 (215)
T 3ezx_A 105 HDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE------------ 172 (215)
T ss_dssp CCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT------------
T ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc------------
Q ss_pred HHHHHHHHHHHhccCCcCCcchHHHHHHHHHHHHHhCCce---eEEEEcCCCCCHHHHHHH
Q 008787 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL---RLVISGGAPLSTEVEEFL 403 (553)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---r~i~~gG~~l~~~~~~~~ 403 (553)
.+ -.+++||.+++++..+.+
T Consensus 173 --------------------------------------~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 --------------------------------------KLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp --------------------------------------TCGGGSEEEEESSSCCHHHHHHH
T ss_pred --------------------------------------CCCCCCEEEEECCCCCHHHHHHh
No 84
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=38.46 E-value=1.4e+02 Score=27.94 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=52.1
Q ss_pred EeeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEE
Q 008787 76 WKTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (553)
Q Consensus 76 ~~Ty~el~~~v~~la---~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 152 (553)
.+++.+......... +.+...++++|++|+|....+.-..++++|....|+.++.+... ++. ..+....+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 367776554433332 33555699999999999887777787888877778877766542 333 356667788777
Q ss_pred EEc
Q 008787 153 FVQ 155 (553)
Q Consensus 153 ~~~ 155 (553)
+..
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 644
No 85
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=35.20 E-value=1.5e+02 Score=27.61 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=43.0
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 94 ~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4455 466643344444555556667778899988777655545555667888899999998753
No 86
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=34.16 E-value=1.5e+02 Score=29.07 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=46.1
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcc
Q 008787 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (553)
Q Consensus 94 ~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~ 156 (553)
.+.| +++|....+....+-.-....++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4555 46775555555556666677778888999887776665666667788999999999975
No 87
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=32.41 E-value=1.9e+02 Score=26.72 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
+.+.| +++|++|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 34444 467776655 44444445556667789988777655544555566788899999998863
No 88
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=30.98 E-value=2.1e+02 Score=26.38 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=42.2
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
+.+.| +++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-..+++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 467766554 44444555566777789988776655544455566778899999998764
No 89
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=29.82 E-value=1.3e+02 Score=21.22 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=34.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCE
Q 008787 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (553)
Q Consensus 75 ~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 127 (553)
..+.+.++.+ .+.+.++.+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4677777654 344557788999999999988888888888888864
No 90
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=29.08 E-value=1.8e+02 Score=22.50 Aligned_cols=54 Identities=11% Similarity=-0.032 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCC--CCCChhHHHH
Q 008787 89 IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLY--DTLGPGAVNF 142 (553)
Q Consensus 89 la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~--~~~~~~~l~~ 142 (553)
.+.+|.+.|+.+...+.+...+..+.+.++-=+++.|...+.+- +..+..+.+.
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RR 101 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 101 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 36778889999998888888888899999999999988655442 4455554333
No 91
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=29.06 E-value=1.3e+02 Score=28.76 Aligned_cols=61 Identities=10% Similarity=-0.034 Sum_probs=38.7
Q ss_pred HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCC-----CChhHHHHHHhhcC--ceEEE
Q 008787 90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT-----LGPGAVNFILDHAE--IDFVF 153 (553)
Q Consensus 90 a~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~i~ 153 (553)
...|...++++||.|.+-.+....+ .-++...|+.++.++.. .+.+++...+...+ .++|+
T Consensus 67 ~~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~ 134 (377)
T 3ju7_A 67 MAAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV 134 (377)
T ss_dssp HHHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC
T ss_pred HHHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE
Confidence 3344455788999988776655443 33456789887776532 36677877774333 56655
No 92
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=28.61 E-value=1.6e+02 Score=27.06 Aligned_cols=73 Identities=7% Similarity=-0.016 Sum_probs=48.2
Q ss_pred EeeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEE
Q 008787 76 WKTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (553)
Q Consensus 76 ~~Ty~el~~~v~~la---~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 152 (553)
.+++.+.......++ +.|...++++|++|++.....+-.++..+|-. .|+.++.+. +++.+ .++++.+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~---~~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNN-AGYVVDLVS---ASLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHH-HTCEEEEEC---SSCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCEEEEEE---ChhhH-HHHHHcCCCEE
Confidence 368887654333333 33434489999999999996677777777654 688777665 23333 34466888887
Q ss_pred E
Q 008787 153 F 153 (553)
Q Consensus 153 ~ 153 (553)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 93
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=27.84 E-value=2.5e+02 Score=28.27 Aligned_cols=86 Identities=9% Similarity=-0.128 Sum_probs=65.5
Q ss_pred EEeccHhHHHHHhhchhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--C-------hHHHHHHh
Q 008787 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--D-------LNALRDDL 308 (553)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~--~-------~~~~~~~i 308 (553)
-.+|.+.+...+..+...+... ++.++|++...++-.. -.....+.++..|+..+..+. . .+.+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSL--NLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 5789999998888887776443 6788999988888754 333456677888998887754 2 57888899
Q ss_pred hhhcCcEEeechHHHHHH
Q 008787 309 MELKPTLLAGVPRVFEKI 326 (553)
Q Consensus 309 ~~~~~t~l~~~p~~~~~l 326 (553)
+..++..++........+
T Consensus 125 ~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHCCSEEEECGGGHHHH
T ss_pred HhcCCCEEEecHHHHHHH
Confidence 999999999988766554
No 94
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=27.74 E-value=2.1e+02 Score=26.95 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=41.7
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
+.+.| +++|+.|..... +-.-..+.++|...|..++.+-|...+..-..+++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445 467776655543 44444555666778987766655545555667888899999998763
No 95
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=27.43 E-value=2.6e+02 Score=25.58 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=41.3
Q ss_pred HHHcC-CCCCC--EEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 93 LRASG-AEPGC--RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 93 L~~~g-l~~gd--~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
+.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33444 56676 4444 33344444556667789988776655544555667788899999998864
No 96
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=26.92 E-value=2.1e+02 Score=28.89 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcc
Q 008787 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (553)
Q Consensus 94 ~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~ 156 (553)
.+.| +++|++|.- ...+-.-....++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 105 ~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 105 EEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3445 578887755 4444455556678888899887776665566667888999999999875
No 97
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=26.75 E-value=1.5e+02 Score=27.42 Aligned_cols=75 Identities=11% Similarity=-0.062 Sum_probs=48.4
Q ss_pred EeeHHHHHHHHHHH--H-HHHHHcCCCCCCEEEEEe-CCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceE
Q 008787 76 WKTYKEVYEEVLQI--V-SALRASGAEPGCRVGIYG-ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 151 (553)
Q Consensus 76 ~~Ty~el~~~v~~l--a-~~L~~~gl~~gd~V~l~~-~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 151 (553)
.+++.+........ | +.|...++++|++|++.. .-.+-..++.+|- ..|+.++.+. +.++ ..++++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 35777765443331 2 334556999999999996 5666666666665 5688766553 3444 45667788887
Q ss_pred EEEc
Q 008787 152 VFVQ 155 (553)
Q Consensus 152 i~~~ 155 (553)
++..
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6643
No 98
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=26.35 E-value=1.7e+02 Score=27.44 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=47.2
Q ss_pred eeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEE
Q 008787 77 KTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (553)
Q Consensus 77 ~Ty~el~~~v~~l---a~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~ 153 (553)
+++.+........ .+.|.+.++++|++|+|...-.+-.+++.+|- ..|+.++.+... ++.+. +++..+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHHH-HHHhcCCCeec
Confidence 6776654322221 23456669999999999987666777666665 468877666543 23333 45668888877
No 99
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=26.15 E-value=2.8e+02 Score=25.35 Aligned_cols=62 Identities=8% Similarity=-0.039 Sum_probs=42.1
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcc
Q 008787 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (553)
Q Consensus 94 ~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~ 156 (553)
.+.| +++|+.|.... .+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 53 ~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 53 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 3444 46777666655 34444455666778998877766655555566788889999999886
No 100
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=25.60 E-value=1.6e+02 Score=27.83 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=48.1
Q ss_pred EeeHHHHHHHHHH---HHHHHHHcCCC-CCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceE
Q 008787 76 WKTYKEVYEEVLQ---IVSALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 151 (553)
Q Consensus 76 ~~Ty~el~~~v~~---la~~L~~~gl~-~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 151 (553)
.+++.+....... .-+.|.+.+++ +|++|+|.....+-..++.+|-. .|+.++.+... ++.+..+.+..+++.
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCce
Confidence 3677664322111 12335566888 99999999876677777777665 58876555442 344445555778876
Q ss_pred EEEcc
Q 008787 152 VFVQD 156 (553)
Q Consensus 152 i~~~~ 156 (553)
++...
T Consensus 229 vi~~~ 233 (357)
T 2cf5_A 229 YVIGS 233 (357)
T ss_dssp EEETT
T ss_pred eeccc
Confidence 66443
No 101
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=25.38 E-value=51 Score=29.95 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeCC
Q 008787 87 LQIVSALRASGAEPGCRVGIYGAN 110 (553)
Q Consensus 87 ~~la~~L~~~gl~~gd~V~l~~~n 110 (553)
..|...|+++||++||.|.+.+.=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 456778999999999999998764
No 102
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=25.20 E-value=2.2e+02 Score=26.81 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=43.6
Q ss_pred HHHHH--cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcc
Q 008787 91 SALRA--SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (553)
Q Consensus 91 ~~L~~--~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~ 156 (553)
+.|.+ .++++|++|+|.....+-..++.+|-...|+.++.+.. +++.+ .+++..+++.++...
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 34556 78999999999998777777777776554887665544 33443 345678888776543
No 103
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=25.00 E-value=2e+02 Score=26.77 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=49.4
Q ss_pred EeeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEE
Q 008787 76 WKTYKEVYEEVLQ---IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (553)
Q Consensus 76 ~~Ty~el~~~v~~---la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 152 (553)
.+++.+....... ..+.|...++++|++|++.....+-.+++.+|- ..|+.++.+.. +++.+ .++++.+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEE
Confidence 3677765432222 123455568999999999887666777777666 46887766644 34443 35677888877
Q ss_pred EEcc
Q 008787 153 FVQD 156 (553)
Q Consensus 153 ~~~~ 156 (553)
+...
T Consensus 215 i~~~ 218 (340)
T 3s2e_A 215 VNAR 218 (340)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6543
No 104
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=23.98 E-value=2e+02 Score=26.77 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=40.7
Q ss_pred CCCCCCEEEEEeCCchh---HHHH-HHHHHhcCCEEeeCCCCC------------ChhHHHHHHhhcCceEEEEcch
Q 008787 97 GAEPGCRVGIYGANCPQ---WVEA-MEACNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 97 gl~~gd~V~l~~~n~~~---~~~~-~lA~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
.+++||+|+|++|.+.- .+-. .--+-..|..++.-+... ..+++..++.+-++++|++...
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 89 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRG 89 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 47899999999998842 1222 222234687777543211 2356888888899999999864
No 105
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=23.82 E-value=57 Score=29.80 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEeC
Q 008787 88 QIVSALRASGAEPGCRVGIYGA 109 (553)
Q Consensus 88 ~la~~L~~~gl~~gd~V~l~~~ 109 (553)
.|...|+++||++||.|.+.+.
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 4677899999999999999875
No 106
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=23.77 E-value=57 Score=29.90 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=22.2
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 008787 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (553)
Q Consensus 75 ~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~ 109 (553)
+.+|-.+ |...|+++||++||.|.+.+.
T Consensus 20 ~~~T~~~-------L~~~L~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 20 ELVTRDR-------LASDLAALGVRPGGVLLVHAS 47 (286)
T ss_dssp CEECHHH-------HHHHHHHHTCCTTCEEEEEEC
T ss_pred CCcCHHH-------HHHHHHHcCCCCCCEEEEEec
Confidence 3566655 566788999999999999865
No 107
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=23.64 E-value=2.8e+02 Score=25.78 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 93 L~~~g-l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
+.+.| +++++.|.... .+-.-....++|.+.|..++.+-|...+..-..+++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEPT-SGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33444 56777765543 444556666777888988877666655566677888999999998853
No 108
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=23.03 E-value=2e+02 Score=23.66 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=36.4
Q ss_pred HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeC--CCCCChhHHH
Q 008787 90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL--YDTLGPGAVN 141 (553)
Q Consensus 90 a~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~ 141 (553)
+.+|.+.|+.+...+.+...+..+.+.++-=+++.|...+.+ .+..+..+.+
T Consensus 89 ~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~Wl~~l~~~~~R 142 (161)
T 1oft_A 89 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARK 142 (161)
T ss_dssp HHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEECCSSCCHHHHH
T ss_pred HHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEECCCcCChHHHH
Confidence 567777888888777777777788888888888888755444 2344544433
No 109
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=22.56 E-value=2.8e+02 Score=26.99 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=32.9
Q ss_pred EEEeCCchhHHHH-HHHHHhcCCEEeeCCCCCChh--HHHHHHhhcCceEEEEcchhhhhhhccc
Q 008787 105 GIYGANCPQWVEA-MEACNALSLICVPLYDTLGPG--AVNFILDHAEIDFVFVQDKKVKELLSPD 166 (553)
Q Consensus 105 ~l~~~n~~~~~~~-~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~i~~~~~~~~~~~~~~ 166 (553)
+++..++.+.+.+ +.++...|-.++..++.+..- .+...+...++++++++....+.+.+..
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai 164 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHAC 164 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhh
Confidence 4555566655443 344555665555555554322 1223566677777777765554444433
No 110
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=22.47 E-value=1.3e+02 Score=29.20 Aligned_cols=51 Identities=10% Similarity=-0.015 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCEEEEEeCCch-hHHH-HHHHHHhcCCEEeeCC
Q 008787 82 VYEEVLQIVSALRAS--GAEPGCRVGIYGANCP-QWVE-AMEACNALSLICVPLY 132 (553)
Q Consensus 82 l~~~v~~la~~L~~~--gl~~gd~V~l~~~n~~-~~~~-~~lA~~~~G~~~v~l~ 132 (553)
+..+..++|..+.+. ++++|+.|.|..+-.. +++- +.-++.++|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 356778888888875 7899999999988653 3333 4667888999877654
No 111
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=22.25 E-value=2.4e+02 Score=26.25 Aligned_cols=78 Identities=8% Similarity=-0.109 Sum_probs=50.1
Q ss_pred eeHHHHHHHHHH---HHHHHHHc--CCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceE
Q 008787 77 KTYKEVYEEVLQ---IVSALRAS--GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 151 (553)
Q Consensus 77 ~Ty~el~~~v~~---la~~L~~~--gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 151 (553)
+++.+....... ..+.|.+. ++++|++|++...-.+-.++..+|-..-|..++.+.. +++. ..+++..+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 566555433222 22345553 7899999999988777778788877665677666644 3333 34567788888
Q ss_pred EEEcch
Q 008787 152 VFVQDK 157 (553)
Q Consensus 152 i~~~~~ 157 (553)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 775543
No 112
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=22.15 E-value=2.8e+02 Score=25.80 Aligned_cols=9 Identities=0% Similarity=-0.363 Sum_probs=3.8
Q ss_pred CCCEEEEEe
Q 008787 100 PGCRVGIYG 108 (553)
Q Consensus 100 ~gd~V~l~~ 108 (553)
+||.|++..
T Consensus 88 ~gd~vl~~~ 96 (384)
T 1eg5_A 88 RKRTIITTP 96 (384)
T ss_dssp TCCEEEECT
T ss_pred CCCEEEECC
Confidence 444444433
No 113
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=22.15 E-value=2.7e+02 Score=26.11 Aligned_cols=51 Identities=6% Similarity=-0.020 Sum_probs=22.4
Q ss_pred CCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCC-------CChhHHHHHHhhcCceEE
Q 008787 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT-------LGPGAVNFILDHAEIDFV 152 (553)
Q Consensus 99 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~i 152 (553)
++||.|++..+.... ...++...|+.++.++.. ...+++...++..++++|
T Consensus 107 ~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v 164 (391)
T 3dzz_A 107 SPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMM 164 (391)
T ss_dssp CTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEE
T ss_pred CCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEE
Confidence 455555544433332 222333455555444431 344555555543444444
No 114
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=21.92 E-value=2.7e+02 Score=26.23 Aligned_cols=63 Identities=24% Similarity=0.244 Sum_probs=42.6
Q ss_pred HHHHHcCCC-CCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcc
Q 008787 91 SALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (553)
Q Consensus 91 ~~L~~~gl~-~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~ 156 (553)
+.|.+.+++ +|++|+|.....+-..++.+|- ..|+.++.+.. +++.+..+.+..+++.++...
T Consensus 177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 345566888 9999999987666777777665 46887655543 345555555577887766433
No 115
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.88 E-value=2.9e+02 Score=23.61 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=43.5
Q ss_pred CCEEEEEeCCc----hhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCceEEEEcch
Q 008787 101 GCRVGIYGANC----PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (553)
Q Consensus 101 gd~V~l~~~n~----~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 157 (553)
..+|.+.+..+ +-..+....+-..|.-++-+....+.+++...+...++++|..+..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 34666665543 4445555566688999999999999999999999999999887653
No 116
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=21.85 E-value=2.3e+02 Score=26.69 Aligned_cols=78 Identities=13% Similarity=-0.015 Sum_probs=48.6
Q ss_pred eeHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEeC-CchhHHHHHHHHHhcCCEEe-eCCCCCChhHHHHHHhhcCce
Q 008787 77 KTYKEVYEEV--LQIV-SALRA-SGAEPGCRVGIYGA-NCPQWVEAMEACNALSLICV-PLYDTLGPGAVNFILDHAEID 150 (553)
Q Consensus 77 ~Ty~el~~~v--~~la-~~L~~-~gl~~gd~V~l~~~-n~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~~ 150 (553)
+++.+..... -..| +.|.+ .++++|++|+|... ..+-.+++.+|-. .|+..+ ........++...+++..+++
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5776654421 1122 23444 48999999999997 5677777777654 687544 344433344445667788988
Q ss_pred EEEEc
Q 008787 151 FVFVQ 155 (553)
Q Consensus 151 ~i~~~ 155 (553)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 87754
No 117
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.97 E-value=2.7e+02 Score=26.41 Aligned_cols=57 Identities=9% Similarity=-0.036 Sum_probs=35.0
Q ss_pred cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCCCC----CChhHHHHHHhhc--CceEEEEc
Q 008787 96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT----LGPGAVNFILDHA--EIDFVFVQ 155 (553)
Q Consensus 96 ~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~i~~~ 155 (553)
.++++||.|.+..+....+.. ++...|+.++.++.. ...+++...++.. ++++|+..
T Consensus 67 l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 67 AGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred cCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 356788888887776655433 334478777666532 3566777777653 45555543
No 118
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=20.61 E-value=3.1e+02 Score=24.74 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 008787 47 IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (553)
Q Consensus 47 ~l~~~a~~~p~~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~la~~L~~~gl~~gd~V~l~~~n~~~~~ 115 (553)
.++...+.-|+..++.+- |...-.+-..|..++.+.+.+.+..|.+.|. ...++.-|+...+
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~ 81 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHH
Confidence 344445678998888776 6655555678999999999999999998654 4556666666653
No 119
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=20.49 E-value=3.9e+02 Score=24.71 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=23.3
Q ss_pred CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeeCC--CC----CChhHHHHHHh
Q 008787 98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLY--DT----LGPGAVNFILD 145 (553)
Q Consensus 98 l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~ 145 (553)
+++||.|++..+....+... +...|+.++.++ .. ...+++...++
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 140 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIE 140 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHH
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHH
Confidence 35667666655544433322 455666655554 21 24556666665
Done!