Query 008788
Match_columns 553
No_of_seqs 476 out of 4630
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 16:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 1E-68 2.2E-73 525.1 39.5 355 161-549 1-358 (397)
2 KOG0545 Aryl-hydrocarbon recep 100.0 1.7E-38 3.6E-43 289.3 17.0 277 265-546 8-329 (329)
3 KOG0543 FKBP-type peptidyl-pro 100.0 4.1E-35 8.8E-40 288.4 25.9 347 37-512 1-357 (397)
4 KOG0549 FKBP-type peptidyl-pro 100.0 9.1E-29 2E-33 216.5 16.2 171 81-259 1-177 (188)
5 KOG0549 FKBP-type peptidyl-pro 100.0 1.6E-28 3.5E-33 214.9 16.4 175 200-383 1-178 (188)
6 KOG0544 FKBP-type peptidyl-pro 99.9 6.9E-27 1.5E-31 179.8 11.9 106 30-143 2-107 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 1.5E-26 3.3E-31 207.6 12.1 112 21-143 93-204 (205)
8 KOG0544 FKBP-type peptidyl-pro 99.9 2.4E-25 5.1E-30 171.4 11.7 107 268-381 2-108 (108)
9 COG0545 FkpA FKBP-type peptidy 99.9 3.6E-23 7.8E-28 185.9 12.2 104 151-257 99-204 (205)
10 PRK11570 peptidyl-prolyl cis-t 99.9 2.1E-22 4.6E-27 188.1 13.9 112 21-143 94-205 (206)
11 KOG0552 FKBP-type peptidyl-pro 99.9 2E-22 4.3E-27 186.1 12.4 118 15-143 106-225 (226)
12 TIGR03516 ppisom_GldI peptidyl 99.9 4.4E-21 9.5E-26 174.9 13.6 111 24-144 64-176 (177)
13 PRK10902 FKBP-type peptidyl-pr 99.8 4.3E-20 9.4E-25 178.8 14.1 114 21-146 138-251 (269)
14 KOG0552 FKBP-type peptidyl-pro 99.8 4.1E-20 8.9E-25 170.8 12.1 106 151-257 118-225 (226)
15 TIGR03516 ppisom_GldI peptidyl 99.8 2.1E-19 4.5E-24 163.9 13.5 107 151-258 67-176 (177)
16 KOG0553 TPR repeat-containing 99.8 1.9E-19 4E-24 171.2 12.4 125 393-533 76-200 (304)
17 KOG4234 TPR repeat-containing 99.8 6.5E-19 1.4E-23 157.0 14.1 135 392-537 89-223 (271)
18 PRK11570 peptidyl-prolyl cis-t 99.8 2.1E-18 4.6E-23 161.2 13.9 105 150-257 99-205 (206)
19 PF00254 FKBP_C: FKBP-type pep 99.8 2.6E-18 5.6E-23 141.7 12.2 94 41-141 1-94 (94)
20 PF00254 FKBP_C: FKBP-type pep 99.7 2.1E-17 4.5E-22 136.3 12.3 91 165-255 1-94 (94)
21 PRK10902 FKBP-type peptidyl-pr 99.7 5.7E-17 1.2E-21 157.2 13.8 106 150-258 143-249 (269)
22 KOG0546 HSP90 co-chaperone CPR 99.7 4.4E-16 9.5E-21 151.0 10.7 243 291-545 110-372 (372)
23 KOG0547 Translocase of outer m 99.7 1.4E-15 3E-20 152.3 14.3 109 387-510 104-212 (606)
24 KOG4648 Uncharacterized conser 99.6 9.3E-16 2E-20 147.2 10.0 121 391-527 90-210 (536)
25 PRK15095 FKBP-type peptidyl-pr 99.6 5E-15 1.1E-19 132.6 13.8 83 45-143 5-87 (156)
26 KOG0548 Molecular co-chaperone 99.6 2.3E-15 5.1E-20 152.8 12.8 117 397-529 357-473 (539)
27 KOG0550 Molecular chaperone (D 99.6 7E-15 1.5E-19 144.7 11.0 129 391-532 242-370 (486)
28 PLN03088 SGT1, suppressor of 99.5 8.5E-14 1.8E-18 143.0 15.4 119 398-532 2-120 (356)
29 KOG0551 Hsp90 co-chaperone CNS 99.5 5.2E-14 1.1E-18 135.1 11.9 104 397-511 80-183 (390)
30 COG1047 SlpA FKBP-type peptidy 99.5 2.1E-13 4.6E-18 121.0 14.6 71 45-119 3-73 (174)
31 TIGR00990 3a0801s09 mitochondr 99.5 3.1E-13 6.7E-18 149.8 18.1 135 364-515 94-228 (615)
32 PRK10737 FKBP-type peptidyl-pr 99.5 2.2E-13 4.8E-18 125.1 13.8 82 45-143 3-84 (196)
33 PRK15359 type III secretion sy 99.4 2.3E-12 5.1E-17 114.9 14.6 109 401-525 27-135 (144)
34 KOG0548 Molecular co-chaperone 99.4 5.3E-13 1.1E-17 135.9 11.3 113 398-526 2-114 (539)
35 PRK15095 FKBP-type peptidyl-pr 99.4 2.9E-13 6.3E-18 121.2 7.5 72 168-239 4-76 (156)
36 KOG4642 Chaperone-dependent E3 99.4 9.3E-13 2E-17 121.1 10.8 118 396-528 8-129 (284)
37 PRK10737 FKBP-type peptidyl-pr 99.4 2.8E-12 6E-17 117.9 11.0 73 168-240 2-74 (196)
38 COG1047 SlpA FKBP-type peptidy 99.3 1.9E-12 4.1E-17 115.0 7.6 74 168-241 2-76 (174)
39 KOG0376 Serine-threonine phosp 99.3 3E-12 6.6E-17 129.5 7.2 122 397-534 3-124 (476)
40 TIGR02552 LcrH_SycD type III s 99.3 7.7E-11 1.7E-15 103.8 14.1 114 398-527 17-130 (135)
41 PRK15363 pathogenicity island 99.3 1.1E-10 2.3E-15 103.0 14.1 100 397-511 34-133 (157)
42 PF13414 TPR_11: TPR repeat; P 99.2 6.4E-11 1.4E-15 91.3 7.9 66 447-512 3-69 (69)
43 PRK10370 formate-dependent nit 99.1 9.1E-10 2E-14 103.6 14.9 103 398-515 73-178 (198)
44 PRK11189 lipoprotein NlpI; Pro 99.1 1.1E-09 2.3E-14 110.1 16.3 104 397-515 63-166 (296)
45 PRK02603 photosystem I assembl 99.0 7.4E-09 1.6E-13 95.4 14.1 116 394-521 31-160 (172)
46 TIGR00990 3a0801s09 mitochondr 99.0 6.5E-09 1.4E-13 115.4 16.0 103 397-514 330-432 (615)
47 TIGR02795 tol_pal_ybgF tol-pal 99.0 7.9E-09 1.7E-13 88.3 12.7 105 399-515 3-110 (119)
48 KOG0547 Translocase of outer m 99.0 4.2E-09 9E-14 106.4 12.3 117 396-530 324-440 (606)
49 KOG1308 Hsp70-interacting prot 99.0 4.5E-10 9.8E-15 109.0 5.1 119 390-525 106-224 (377)
50 KOG4626 O-linked N-acetylgluco 99.0 5.2E-09 1.1E-13 108.2 12.2 113 397-525 285-397 (966)
51 KOG0624 dsRNA-activated protei 99.0 2.3E-09 5E-14 103.7 9.0 132 388-531 259-390 (504)
52 PF12895 Apc3: Anaphase-promot 98.9 2.5E-09 5.5E-14 85.9 7.4 83 411-507 2-84 (84)
53 CHL00033 ycf3 photosystem I as 98.9 3.3E-08 7.1E-13 90.7 14.8 116 395-522 32-161 (168)
54 KOG4626 O-linked N-acetylgluco 98.9 4.8E-09 1E-13 108.4 10.0 109 399-523 355-463 (966)
55 PF13432 TPR_16: Tetratricopep 98.9 4.8E-09 1E-13 79.7 7.7 64 451-514 1-64 (65)
56 KOG0624 dsRNA-activated protei 98.9 1.1E-08 2.4E-13 99.1 11.8 105 396-515 36-140 (504)
57 cd00189 TPR Tetratricopeptide 98.9 1.3E-08 2.9E-13 81.6 10.3 98 401-513 3-100 (100)
58 KOG4555 TPR repeat-containing 98.9 6.7E-08 1.5E-12 81.1 14.2 115 393-525 38-156 (175)
59 KOG1126 DNA-binding cell divis 98.9 3.8E-09 8.2E-14 110.6 8.4 113 398-514 421-556 (638)
60 PRK09782 bacteriophage N4 rece 98.9 3.3E-08 7.1E-13 113.3 16.7 110 400-525 611-720 (987)
61 PF13414 TPR_11: TPR repeat; P 98.8 6.5E-09 1.4E-13 80.0 6.1 66 398-478 3-69 (69)
62 PRK15331 chaperone protein Sic 98.8 7.4E-08 1.6E-12 85.5 12.6 102 397-514 36-137 (165)
63 PRK15359 type III secretion sy 98.8 4.8E-08 1E-12 87.1 11.0 93 418-529 13-105 (144)
64 TIGR03302 OM_YfiO outer membra 98.8 1.7E-07 3.6E-12 90.9 15.5 107 397-515 32-149 (235)
65 PRK10370 formate-dependent nit 98.8 1.4E-07 3.1E-12 88.7 14.2 119 410-545 51-172 (198)
66 KOG1155 Anaphase-promoting com 98.8 6.5E-08 1.4E-12 97.4 12.1 125 402-543 334-458 (559)
67 KOG1173 Anaphase-promoting com 98.8 6.7E-08 1.5E-12 99.5 12.4 116 401-525 417-532 (611)
68 KOG1125 TPR repeat-containing 98.7 1.9E-08 4.2E-13 103.8 7.5 98 401-513 433-530 (579)
69 PRK12370 invasion protein regu 98.7 1.2E-07 2.7E-12 103.7 14.4 91 410-515 316-406 (553)
70 PRK12370 invasion protein regu 98.7 1.5E-07 3.3E-12 102.9 15.1 110 400-525 340-450 (553)
71 PRK15179 Vi polysaccharide bio 98.7 1.2E-07 2.5E-12 104.9 14.0 112 397-524 85-196 (694)
72 TIGR02521 type_IV_pilW type IV 98.7 4.1E-07 8.9E-12 86.7 16.0 112 401-526 102-213 (234)
73 TIGR00115 tig trigger factor. 98.7 3.3E-08 7.1E-13 104.0 8.8 95 45-155 147-241 (408)
74 COG3063 PilF Tfp pilus assembl 98.7 3.1E-07 6.8E-12 85.0 13.8 105 396-515 33-173 (250)
75 COG0544 Tig FKBP-type peptidyl 98.7 3.2E-08 7E-13 103.1 7.5 95 45-155 158-252 (441)
76 PF13371 TPR_9: Tetratricopept 98.7 1.1E-07 2.4E-12 73.9 8.7 66 454-520 2-67 (73)
77 PLN02789 farnesyltranstransfer 98.7 5.1E-07 1.1E-11 91.1 15.2 111 399-525 72-185 (320)
78 TIGR02521 type_IV_pilW type IV 98.7 6.8E-07 1.5E-11 85.1 15.6 113 398-514 31-168 (234)
79 PRK09782 bacteriophage N4 rece 98.7 4.1E-07 8.9E-12 104.4 16.2 101 411-528 589-689 (987)
80 PRK11189 lipoprotein NlpI; Pro 98.7 4.6E-07 1E-11 91.0 14.8 94 411-515 39-132 (296)
81 PRK15179 Vi polysaccharide bio 98.6 4.3E-07 9.2E-12 100.4 15.3 117 397-528 119-235 (694)
82 PRK01490 tig trigger factor; P 98.6 7.8E-08 1.7E-12 102.0 9.0 90 45-150 158-247 (435)
83 PRK15174 Vi polysaccharide exp 98.6 3.9E-07 8.4E-12 101.6 14.7 106 404-525 218-327 (656)
84 TIGR02552 LcrH_SycD type III s 98.6 3.7E-07 8E-12 80.2 11.7 94 420-529 5-98 (135)
85 PRK10803 tol-pal system protei 98.6 8.2E-07 1.8E-11 87.0 14.7 104 400-515 144-251 (263)
86 PF14559 TPR_19: Tetratricopep 98.6 1.2E-07 2.6E-12 72.6 7.0 67 457-524 1-67 (68)
87 KOG1155 Anaphase-promoting com 98.6 1E-06 2.2E-11 89.0 15.1 130 398-544 364-493 (559)
88 PRK10866 outer membrane biogen 98.6 1.8E-06 3.9E-11 83.9 16.2 124 398-533 32-178 (243)
89 COG5010 TadD Flp pilus assembl 98.6 9.6E-07 2.1E-11 83.5 13.3 114 398-527 100-213 (257)
90 KOG1310 WD40 repeat protein [G 98.6 2.2E-07 4.7E-12 94.8 9.1 109 391-514 367-478 (758)
91 PRK15174 Vi polysaccharide exp 98.6 9.6E-07 2.1E-11 98.5 15.2 101 399-514 247-351 (656)
92 KOG1126 DNA-binding cell divis 98.6 7.1E-07 1.5E-11 93.9 13.0 121 397-533 488-608 (638)
93 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3E-07 6.5E-12 94.1 9.8 64 447-510 75-141 (453)
94 PRK11788 tetratricopeptide rep 98.5 1.4E-06 3E-11 91.0 15.0 68 448-515 181-248 (389)
95 PF13525 YfiO: Outer membrane 98.5 2.7E-06 6E-11 80.5 15.3 125 398-534 5-145 (203)
96 COG3063 PilF Tfp pilus assembl 98.5 1.2E-06 2.7E-11 81.2 12.3 105 397-514 102-206 (250)
97 KOG4162 Predicted calmodulin-b 98.5 5.3E-07 1.2E-11 96.1 11.2 103 398-515 684-788 (799)
98 PF13512 TPR_18: Tetratricopep 98.5 1.6E-06 3.6E-11 75.3 12.2 106 398-515 10-133 (142)
99 PF13432 TPR_16: Tetratricopep 98.5 2.2E-07 4.7E-12 70.5 6.1 64 403-481 2-65 (65)
100 PLN02789 farnesyltranstransfer 98.5 2.1E-06 4.6E-11 86.6 14.7 121 408-545 47-170 (320)
101 COG4785 NlpI Lipoprotein NlpI, 98.5 1.8E-07 4E-12 85.4 6.2 132 365-514 35-166 (297)
102 PRK11447 cellulose synthase su 98.5 2E-06 4.4E-11 102.2 16.6 122 398-524 303-427 (1157)
103 KOG0553 TPR repeat-containing 98.5 7.8E-07 1.7E-11 85.6 10.6 77 450-527 84-160 (304)
104 PRK10049 pgaA outer membrane p 98.5 1.8E-06 3.8E-11 98.3 15.4 111 398-525 49-159 (765)
105 KOG0550 Molecular chaperone (D 98.5 1.9E-06 4.2E-11 85.9 13.0 113 397-513 202-319 (486)
106 PF13429 TPR_15: Tetratricopep 98.5 6.5E-07 1.4E-11 89.3 9.5 116 398-529 146-261 (280)
107 TIGR00115 tig trigger factor. 98.4 1.1E-06 2.3E-11 92.6 10.8 86 168-259 146-231 (408)
108 PRK11447 cellulose synthase su 98.4 3.8E-06 8.3E-11 99.9 16.6 113 399-515 386-529 (1157)
109 PF06552 TOM20_plant: Plant sp 98.4 2.9E-06 6.2E-11 76.1 11.6 98 414-527 7-125 (186)
110 PF13424 TPR_12: Tetratricopep 98.4 5.6E-07 1.2E-11 71.0 6.3 65 446-510 4-75 (78)
111 TIGR02917 PEP_TPR_lipo putativ 98.4 3.6E-06 7.9E-11 96.9 15.6 104 397-515 124-227 (899)
112 CHL00033 ycf3 photosystem I as 98.4 6E-06 1.3E-10 75.6 13.7 111 403-527 4-117 (168)
113 TIGR02917 PEP_TPR_lipo putativ 98.4 4.9E-06 1.1E-10 95.8 16.1 98 401-514 706-803 (899)
114 PRK11788 tetratricopeptide rep 98.4 7.3E-06 1.6E-10 85.6 15.7 99 401-514 183-282 (389)
115 TIGR03302 OM_YfiO outer membra 98.4 6.5E-06 1.4E-10 79.7 14.0 104 399-514 71-199 (235)
116 PF14559 TPR_19: Tetratricopep 98.4 8.3E-07 1.8E-11 67.9 6.0 67 408-489 1-67 (68)
117 PRK10049 pgaA outer membrane p 98.4 5.5E-06 1.2E-10 94.3 15.0 102 399-515 360-461 (765)
118 PRK15363 pathogenicity island 98.4 4.6E-06 9.9E-11 73.9 10.9 80 447-527 35-114 (157)
119 cd00189 TPR Tetratricopeptide 98.3 7.3E-06 1.6E-10 65.3 11.5 80 449-529 2-81 (100)
120 KOG2076 RNA polymerase III tra 98.3 1.1E-05 2.5E-10 87.5 15.9 113 397-513 138-273 (895)
121 COG4235 Cytochrome c biogenesi 98.3 6.8E-06 1.5E-10 79.7 12.8 105 397-516 155-262 (287)
122 TIGR02795 tol_pal_ybgF tol-pal 98.3 8.4E-06 1.8E-10 69.4 12.0 100 448-548 3-107 (119)
123 PLN03088 SGT1, suppressor of 98.3 6.1E-06 1.3E-10 85.0 12.7 78 450-528 5-82 (356)
124 PRK01490 tig trigger factor; P 98.3 4.2E-06 9.1E-11 88.8 10.8 86 168-259 157-242 (435)
125 PF09976 TPR_21: Tetratricopep 98.3 6.6E-06 1.4E-10 73.4 10.4 97 399-508 49-145 (145)
126 PF12688 TPR_5: Tetratrico pep 98.3 1.6E-05 3.6E-10 67.9 11.9 98 400-509 3-103 (120)
127 KOG2003 TPR repeat-containing 98.2 9.7E-06 2.1E-10 81.5 11.4 112 398-525 490-601 (840)
128 COG0544 Tig FKBP-type peptidyl 98.2 3.8E-06 8.2E-11 87.8 8.6 82 169-258 158-241 (441)
129 PF13424 TPR_12: Tetratricopep 98.2 4.6E-06 9.9E-11 65.7 7.2 74 396-477 3-76 (78)
130 PF13371 TPR_9: Tetratricopept 98.2 6.7E-06 1.5E-10 63.8 7.9 69 406-489 3-71 (73)
131 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.4E-05 3.1E-10 82.0 12.2 71 395-477 72-142 (453)
132 PF15015 NYD-SP12_N: Spermatog 98.2 1.7E-05 3.6E-10 79.3 12.3 137 397-534 175-318 (569)
133 COG1729 Uncharacterized protei 98.2 2.3E-05 5E-10 75.2 12.4 106 398-515 141-249 (262)
134 KOG1129 TPR repeat-containing 98.2 7.1E-06 1.5E-10 79.5 8.7 110 403-528 329-441 (478)
135 PRK02603 photosystem I assembl 98.2 2.1E-05 4.5E-10 72.4 11.5 78 447-525 35-115 (172)
136 COG4783 Putative Zn-dependent 98.2 5.6E-05 1.2E-09 77.5 15.3 109 403-527 345-453 (484)
137 KOG2076 RNA polymerase III tra 98.1 2.6E-05 5.6E-10 84.9 12.6 102 396-511 412-513 (895)
138 KOG2003 TPR repeat-containing 98.1 8.3E-06 1.8E-10 82.0 8.2 98 402-510 241-338 (840)
139 PF03704 BTAD: Bacterial trans 98.1 0.00013 2.8E-09 65.1 15.3 111 399-509 7-124 (146)
140 KOG1840 Kinesin light chain [C 98.1 3.6E-05 7.7E-10 81.6 13.2 109 395-510 238-354 (508)
141 PRK14574 hmsH outer membrane p 98.1 4.4E-05 9.5E-10 86.3 14.5 146 398-550 34-202 (822)
142 COG5010 TadD Flp pilus assembl 98.1 5.5E-05 1.2E-09 71.8 12.7 68 449-516 102-169 (257)
143 PF00515 TPR_1: Tetratricopept 98.1 6E-06 1.3E-10 53.6 4.4 33 481-513 1-33 (34)
144 COG4783 Putative Zn-dependent 98.1 8.8E-05 1.9E-09 76.1 14.6 114 400-529 308-421 (484)
145 KOG2002 TPR-containing nuclear 98.0 5.5E-05 1.2E-09 83.0 13.4 118 399-529 271-389 (1018)
146 PRK10153 DNA-binding transcrip 98.0 9.1E-05 2E-09 79.7 15.1 113 398-515 339-487 (517)
147 KOG2002 TPR-containing nuclear 98.0 5.7E-05 1.2E-09 82.9 12.5 129 398-532 452-580 (1018)
148 KOG1840 Kinesin light chain [C 98.0 0.0001 2.2E-09 78.2 14.1 123 398-527 199-333 (508)
149 PRK14574 hmsH outer membrane p 98.0 7.6E-05 1.7E-09 84.4 13.6 97 412-525 116-212 (822)
150 cd05804 StaR_like StaR_like; a 98.0 7.1E-05 1.5E-09 77.1 12.5 110 400-513 45-180 (355)
151 PF14938 SNAP: Soluble NSF att 98.0 4.3E-05 9.4E-10 76.2 10.4 133 397-540 113-253 (282)
152 PF12968 DUF3856: Domain of Un 98.0 0.00031 6.8E-09 58.3 13.2 110 398-510 9-129 (144)
153 KOG0545 Aryl-hydrocarbon recep 98.0 2.4E-06 5.1E-11 79.6 1.0 85 23-111 4-91 (329)
154 PF07719 TPR_2: Tetratricopept 97.9 2E-05 4.3E-10 51.0 5.0 34 481-514 1-34 (34)
155 KOG4151 Myosin assembly protei 97.9 2.4E-05 5.1E-10 84.4 8.3 114 390-514 45-160 (748)
156 KOG1128 Uncharacterized conser 97.9 5.2E-05 1.1E-09 80.9 10.7 101 398-513 485-585 (777)
157 cd05804 StaR_like StaR_like; a 97.9 8E-05 1.7E-09 76.8 11.8 99 399-512 115-217 (355)
158 PRK10803 tol-pal system protei 97.9 0.00014 3E-09 71.4 12.2 100 448-548 143-248 (263)
159 PF13431 TPR_17: Tetratricopep 97.9 1.5E-05 3.2E-10 51.7 3.6 34 469-502 1-34 (34)
160 KOG1125 TPR repeat-containing 97.9 0.00017 3.7E-09 75.3 13.2 67 448-514 431-497 (579)
161 COG2956 Predicted N-acetylgluc 97.9 0.00026 5.7E-09 68.9 12.9 138 388-529 100-262 (389)
162 KOG1174 Anaphase-promoting com 97.8 0.00018 4E-09 72.0 11.6 62 398-474 334-395 (564)
163 PF00515 TPR_1: Tetratricopept 97.8 3.3E-05 7.1E-10 50.1 4.3 33 448-480 2-34 (34)
164 PRK11906 transcriptional regul 97.8 0.00034 7.3E-09 72.2 13.3 101 402-514 259-371 (458)
165 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00014 2.9E-09 75.2 10.3 91 404-509 206-296 (395)
166 PF12895 Apc3: Anaphase-promot 97.8 6E-05 1.3E-09 60.3 6.0 75 460-536 2-78 (84)
167 PRK14720 transcript cleavage f 97.7 0.00034 7.4E-09 78.7 13.6 100 398-514 31-149 (906)
168 PF13429 TPR_15: Tetratricopep 97.7 0.00016 3.4E-09 72.1 10.0 114 403-530 115-228 (280)
169 PRK11906 transcriptional regul 97.7 0.00038 8.2E-09 71.8 12.6 89 411-514 317-405 (458)
170 TIGR00540 hemY_coli hemY prote 97.7 0.0016 3.4E-08 68.7 17.5 116 394-513 80-219 (409)
171 KOG1129 TPR repeat-containing 97.7 0.00022 4.8E-09 69.4 9.8 97 402-514 227-323 (478)
172 COG4105 ComL DNA uptake lipopr 97.7 0.0022 4.9E-08 61.2 16.0 124 398-533 34-170 (254)
173 KOG1156 N-terminal acetyltrans 97.7 0.00028 6.1E-09 74.5 10.8 117 401-533 10-126 (700)
174 KOG3060 Uncharacterized conser 97.7 0.0016 3.5E-08 61.6 14.6 130 403-537 91-246 (289)
175 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00032 6.8E-09 50.3 7.6 48 482-530 2-49 (53)
176 PF09976 TPR_21: Tetratricopep 97.6 0.003 6.5E-08 56.2 15.8 101 394-506 7-110 (145)
177 PRK10747 putative protoheme IX 97.6 0.0022 4.8E-08 67.3 17.2 106 394-514 80-186 (398)
178 PF13428 TPR_14: Tetratricopep 97.6 0.00015 3.3E-09 50.0 5.5 39 450-488 4-42 (44)
179 TIGR00540 hemY_coli hemY prote 97.6 0.00069 1.5E-08 71.4 13.0 130 397-542 262-395 (409)
180 PF13428 TPR_14: Tetratricopep 97.6 0.00016 3.6E-09 49.9 5.5 42 481-523 1-42 (44)
181 KOG1128 Uncharacterized conser 97.6 0.00023 5E-09 76.1 9.0 77 448-525 486-562 (777)
182 PF14938 SNAP: Soluble NSF att 97.6 0.00024 5.1E-09 70.9 8.7 105 396-510 33-144 (282)
183 KOG1130 Predicted G-alpha GTPa 97.6 0.00022 4.7E-09 71.4 7.9 111 393-512 190-306 (639)
184 COG4700 Uncharacterized protei 97.6 0.0026 5.7E-08 57.4 13.6 102 399-514 90-193 (251)
185 PRK10747 putative protoheme IX 97.5 0.0018 3.8E-08 68.0 14.8 97 405-515 125-221 (398)
186 PF12569 NARP1: NMDA receptor- 97.5 0.0012 2.6E-08 70.8 13.5 68 447-514 194-261 (517)
187 PF07719 TPR_2: Tetratricopept 97.5 0.00024 5.2E-09 45.8 4.9 33 448-480 2-34 (34)
188 KOG3060 Uncharacterized conser 97.5 0.0027 5.8E-08 60.1 13.6 55 447-501 188-245 (289)
189 PF13181 TPR_8: Tetratricopept 97.5 0.00019 4.2E-09 46.3 4.2 32 482-513 2-33 (34)
190 PF12688 TPR_5: Tetratrico pep 97.5 0.0023 5E-08 54.7 11.9 66 448-513 2-70 (120)
191 KOG4555 TPR repeat-containing 97.4 0.0005 1.1E-08 58.3 6.9 62 452-513 48-109 (175)
192 KOG1130 Predicted G-alpha GTPa 97.4 0.0015 3.2E-08 65.6 11.2 103 399-510 236-344 (639)
193 PF04733 Coatomer_E: Coatomer 97.4 0.0024 5.1E-08 63.8 12.8 88 412-514 181-269 (290)
194 KOG4648 Uncharacterized conser 97.4 0.0006 1.3E-08 66.8 8.0 63 451-513 101-163 (536)
195 COG4235 Cytochrome c biogenesi 97.3 0.006 1.3E-07 59.5 14.4 120 412-548 136-258 (287)
196 PRK14720 transcript cleavage f 97.3 0.002 4.3E-08 72.7 12.6 112 399-527 117-268 (906)
197 COG2956 Predicted N-acetylgluc 97.3 0.006 1.3E-07 59.8 14.1 104 396-514 178-282 (389)
198 PRK10866 outer membrane biogen 97.3 0.0041 8.8E-08 60.5 13.0 70 447-516 32-104 (243)
199 PF13525 YfiO: Outer membrane 97.3 0.0058 1.3E-07 57.7 13.7 69 447-515 5-76 (203)
200 KOG4507 Uncharacterized conser 97.3 0.0011 2.4E-08 69.3 8.9 108 403-525 612-719 (886)
201 KOG1173 Anaphase-promoting com 97.2 0.0026 5.6E-08 66.5 10.9 110 400-525 314-423 (611)
202 KOG1156 N-terminal acetyltrans 97.2 0.004 8.7E-08 66.1 12.4 94 403-511 80-173 (700)
203 COG1729 Uncharacterized protei 97.2 0.0036 7.9E-08 60.3 11.2 99 450-549 144-247 (262)
204 KOG4162 Predicted calmodulin-b 97.2 0.0037 8E-08 67.6 12.0 111 403-529 655-767 (799)
205 PRK10941 hypothetical protein; 97.2 0.0049 1.1E-07 60.5 11.9 70 445-514 179-248 (269)
206 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.002 4.3E-08 46.3 6.7 42 448-489 2-43 (53)
207 KOG1127 TPR repeat-containing 97.1 0.0044 9.4E-08 68.7 11.5 74 454-528 9-83 (1238)
208 KOG4340 Uncharacterized conser 97.1 0.0027 5.9E-08 61.3 8.6 93 398-505 144-265 (459)
209 PF13512 TPR_18: Tetratricopep 97.0 0.015 3.3E-07 50.8 12.4 69 447-515 10-81 (142)
210 KOG3364 Membrane protein invol 97.0 0.0056 1.2E-07 52.3 9.3 82 447-529 32-118 (149)
211 KOG3785 Uncharacterized conser 97.0 0.0034 7.4E-08 62.0 9.1 86 408-507 32-117 (557)
212 PF09986 DUF2225: Uncharacteri 97.0 0.028 6E-07 53.4 14.6 103 404-514 83-198 (214)
213 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.0089 1.9E-07 61.9 12.0 105 412-535 183-287 (395)
214 KOG4814 Uncharacterized conser 96.9 0.005 1.1E-07 65.1 10.0 104 398-510 354-457 (872)
215 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0025 5.5E-08 58.9 6.7 70 446-515 64-133 (297)
216 PF13181 TPR_8: Tetratricopept 96.9 0.0017 3.6E-08 41.8 4.1 33 448-480 2-34 (34)
217 PF04733 Coatomer_E: Coatomer 96.9 0.0044 9.6E-08 61.8 9.1 67 449-515 165-235 (290)
218 KOG4642 Chaperone-dependent E3 96.9 0.0015 3.3E-08 61.1 5.1 61 454-514 17-77 (284)
219 PRK15331 chaperone protein Sic 96.9 0.022 4.8E-07 50.9 12.2 67 448-514 38-104 (165)
220 KOG0495 HAT repeat protein [RN 96.8 0.017 3.7E-07 61.5 13.0 124 401-529 587-732 (913)
221 COG3118 Thioredoxin domain-con 96.8 0.039 8.5E-07 53.8 14.4 131 399-544 135-304 (304)
222 KOG1586 Protein required for f 96.8 0.027 5.8E-07 52.9 12.6 129 401-540 116-252 (288)
223 KOG2796 Uncharacterized conser 96.8 0.025 5.4E-07 54.0 12.5 115 400-514 179-319 (366)
224 KOG3785 Uncharacterized conser 96.8 0.011 2.4E-07 58.5 10.3 73 451-525 155-227 (557)
225 KOG4234 TPR repeat-containing 96.8 0.018 3.9E-07 52.8 10.9 70 398-482 134-203 (271)
226 KOG1174 Anaphase-promoting com 96.7 0.012 2.6E-07 59.4 10.5 100 400-514 302-401 (564)
227 PF10300 DUF3808: Protein of u 96.7 0.0093 2E-07 63.8 10.5 99 401-511 270-377 (468)
228 PF13174 TPR_6: Tetratricopept 96.7 0.0027 5.9E-08 40.3 3.9 31 483-513 2-32 (33)
229 PF13431 TPR_17: Tetratricopep 96.7 0.002 4.3E-08 41.7 3.0 34 420-468 1-34 (34)
230 COG2976 Uncharacterized protei 96.6 0.027 5.9E-07 51.5 11.1 103 398-513 89-191 (207)
231 KOG2376 Signal recognition par 96.6 0.038 8.3E-07 58.3 13.4 127 403-547 84-254 (652)
232 smart00028 TPR Tetratricopepti 96.6 0.0038 8.2E-08 38.6 3.9 32 482-513 2-33 (34)
233 KOG1127 TPR repeat-containing 96.5 0.038 8.2E-07 61.6 13.3 98 402-514 6-107 (1238)
234 KOG0551 Hsp90 co-chaperone CNS 96.4 0.022 4.7E-07 56.1 9.8 68 448-515 82-153 (390)
235 KOG0495 HAT repeat protein [RN 96.4 0.032 6.9E-07 59.5 11.6 82 446-530 684-765 (913)
236 KOG2396 HAT (Half-A-TPR) repea 96.4 0.16 3.5E-06 52.8 16.1 93 415-523 88-181 (568)
237 PF13176 TPR_7: Tetratricopept 96.2 0.0098 2.1E-07 38.9 4.3 29 483-511 1-29 (36)
238 KOG0376 Serine-threonine phosp 96.1 0.0044 9.6E-08 63.9 3.6 65 450-514 7-71 (476)
239 PF12569 NARP1: NMDA receptor- 96.1 0.045 9.9E-07 58.9 11.4 78 448-526 5-82 (517)
240 COG3071 HemY Uncharacterized e 96.1 0.2 4.2E-06 50.8 14.9 107 393-514 79-186 (400)
241 PF04184 ST7: ST7 protein; In 96.1 0.084 1.8E-06 55.0 12.6 124 386-509 179-323 (539)
242 KOG2376 Signal recognition par 96.1 0.056 1.2E-06 57.1 11.4 111 401-515 113-258 (652)
243 KOG1941 Acetylcholine receptor 96.1 0.054 1.2E-06 54.0 10.5 118 397-514 5-155 (518)
244 KOG3824 Huntingtin interacting 96.0 0.031 6.7E-07 54.4 8.4 69 447-515 116-184 (472)
245 PF08631 SPO22: Meiosis protei 96.0 0.27 5.9E-06 48.8 15.6 122 388-511 25-151 (278)
246 PF13174 TPR_6: Tetratricopept 96.0 0.013 2.7E-07 37.2 4.0 32 449-480 2-33 (33)
247 PF13176 TPR_7: Tetratricopept 95.9 0.013 2.9E-07 38.3 4.0 29 449-477 1-29 (36)
248 smart00028 TPR Tetratricopepti 95.9 0.013 2.9E-07 35.9 4.0 33 448-480 2-34 (34)
249 COG4976 Predicted methyltransf 95.9 0.014 3E-07 54.5 5.4 60 456-515 4-63 (287)
250 COG3071 HemY Uncharacterized e 95.9 0.081 1.7E-06 53.5 11.0 96 400-513 265-360 (400)
251 KOG1915 Cell cycle control pro 95.8 0.21 4.6E-06 51.6 13.7 124 401-543 76-200 (677)
252 KOG1585 Protein required for f 95.8 0.081 1.8E-06 50.1 9.9 132 403-546 115-252 (308)
253 COG4105 ComL DNA uptake lipopr 95.7 0.21 4.6E-06 47.9 12.7 70 446-515 33-105 (254)
254 COG0457 NrfG FOG: TPR repeat [ 95.7 0.16 3.4E-06 46.8 12.0 94 407-513 139-234 (291)
255 PRK10153 DNA-binding transcrip 95.5 0.2 4.4E-06 54.2 13.3 111 415-527 337-464 (517)
256 KOG1941 Acetylcholine receptor 95.4 0.039 8.4E-07 55.0 6.6 99 403-510 127-235 (518)
257 COG0457 NrfG FOG: TPR repeat [ 95.4 0.16 3.5E-06 46.7 10.9 102 397-513 94-199 (291)
258 PF06552 TOM20_plant: Plant sp 95.4 0.063 1.4E-06 48.6 7.4 52 463-514 7-68 (186)
259 PF14561 TPR_20: Tetratricopep 95.3 0.21 4.5E-06 40.4 9.6 63 466-528 7-70 (90)
260 KOG3081 Vesicle coat complex C 95.2 0.28 6.1E-06 47.2 11.3 65 450-514 172-240 (299)
261 PF10255 Paf67: RNA polymerase 95.0 0.093 2E-06 54.2 8.5 132 421-552 138-272 (404)
262 PRK04841 transcriptional regul 94.9 0.17 3.7E-06 59.1 11.6 100 403-511 496-603 (903)
263 KOG4340 Uncharacterized conser 94.9 0.14 3E-06 49.9 8.7 63 447-509 144-206 (459)
264 KOG1586 Protein required for f 94.9 0.77 1.7E-05 43.4 13.2 110 394-513 29-146 (288)
265 PF04781 DUF627: Protein of un 94.8 0.14 3E-06 42.6 7.3 103 404-511 2-108 (111)
266 KOG3824 Huntingtin interacting 94.8 0.19 4.2E-06 49.1 9.2 83 395-492 113-195 (472)
267 KOG1308 Hsp70-interacting prot 94.7 0.011 2.3E-07 58.5 0.8 59 457-515 124-182 (377)
268 COG2912 Uncharacterized conser 94.7 0.26 5.7E-06 47.8 10.0 70 445-514 179-248 (269)
269 KOG4507 Uncharacterized conser 94.6 0.13 2.8E-06 54.3 8.2 119 410-541 225-345 (886)
270 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.21 4.6E-06 38.7 7.3 68 397-476 5-72 (80)
271 PRK04841 transcriptional regul 94.6 0.3 6.4E-06 57.1 12.4 104 402-512 535-643 (903)
272 PF10952 DUF2753: Protein of u 94.6 0.18 3.8E-06 42.5 7.3 118 400-525 3-125 (140)
273 KOG1915 Cell cycle control pro 94.5 0.47 1E-05 49.2 11.8 99 396-510 402-500 (677)
274 KOG2471 TPR repeat-containing 94.4 0.11 2.3E-06 53.9 7.0 97 398-494 283-382 (696)
275 PF13374 TPR_10: Tetratricopep 94.4 0.087 1.9E-06 35.2 4.5 29 448-476 3-31 (42)
276 PF07079 DUF1347: Protein of u 94.3 0.98 2.1E-05 46.7 13.5 74 454-531 469-545 (549)
277 KOG2053 Mitochondrial inherita 94.3 0.9 2E-05 50.6 14.0 89 409-513 20-109 (932)
278 PLN03081 pentatricopeptide (PP 94.2 0.29 6.3E-06 55.4 11.0 63 448-510 495-557 (697)
279 KOG3081 Vesicle coat complex C 94.2 0.84 1.8E-05 44.0 12.1 68 447-514 207-275 (299)
280 PF10602 RPN7: 26S proteasome 94.2 0.33 7.2E-06 44.6 9.3 100 398-509 36-141 (177)
281 COG3629 DnrI DNA-binding trans 94.1 0.67 1.5E-05 45.6 11.5 72 439-510 145-216 (280)
282 PF12968 DUF3856: Domain of Un 94.1 0.4 8.8E-06 40.3 8.4 72 401-476 58-129 (144)
283 PF05843 Suf: Suppressor of fo 93.9 0.75 1.6E-05 45.7 11.8 87 413-514 16-103 (280)
284 COG3947 Response regulator con 93.8 0.34 7.3E-06 47.2 8.6 76 433-508 265-340 (361)
285 KOG3364 Membrane protein invol 93.4 0.21 4.5E-06 43.0 5.7 41 447-487 71-111 (149)
286 PLN03218 maturation of RBCL 1; 93.3 1.9 4.1E-05 50.9 15.6 59 450-508 652-711 (1060)
287 KOG1585 Protein required for f 93.3 2.8 6E-05 40.1 13.6 99 403-510 36-139 (308)
288 KOG0686 COP9 signalosome, subu 93.0 0.36 7.8E-06 49.1 7.8 97 400-508 152-256 (466)
289 KOG2610 Uncharacterized conser 92.9 1.6 3.4E-05 43.6 11.7 104 399-506 104-234 (491)
290 PF10516 SHNi-TPR: SHNi-TPR; 92.9 0.19 4.1E-06 33.3 3.8 30 482-511 2-31 (38)
291 KOG2471 TPR repeat-containing 92.8 0.14 3.1E-06 53.0 4.7 118 401-525 243-378 (696)
292 PF02259 FAT: FAT domain; Int 92.7 0.91 2E-05 46.4 10.8 113 401-513 187-341 (352)
293 PLN03218 maturation of RBCL 1; 92.7 1.9 4.1E-05 50.9 14.4 62 449-510 581-643 (1060)
294 PF06957 COPI_C: Coatomer (COP 92.6 1.3 2.7E-05 46.2 11.3 120 395-514 201-333 (422)
295 PF13374 TPR_10: Tetratricopep 92.5 0.3 6.4E-06 32.5 4.6 30 481-510 2-31 (42)
296 PF12862 Apc5: Anaphase-promot 92.1 0.73 1.6E-05 37.4 7.3 63 409-477 9-71 (94)
297 PF08631 SPO22: Meiosis protei 92.0 5 0.00011 39.8 14.7 99 408-513 3-119 (278)
298 PF12862 Apc5: Anaphase-promot 92.0 0.75 1.6E-05 37.4 7.2 57 457-513 8-73 (94)
299 PLN03077 Protein ECB2; Provisi 91.7 2.4 5.3E-05 49.3 13.8 62 448-509 658-719 (857)
300 PHA02537 M terminase endonucle 91.7 1.7 3.7E-05 41.5 10.2 120 408-532 93-227 (230)
301 KOG2300 Uncharacterized conser 91.4 3.1 6.8E-05 43.5 12.3 98 398-511 367-475 (629)
302 PF03704 BTAD: Bacterial trans 91.1 1 2.2E-05 39.6 7.8 63 397-474 61-123 (146)
303 KOG2053 Mitochondrial inherita 91.0 1.6 3.4E-05 48.8 10.4 112 403-530 48-159 (932)
304 PF04184 ST7: ST7 protein; In 90.9 2.2 4.8E-05 44.9 10.8 101 401-514 262-379 (539)
305 PLN03081 pentatricopeptide (PP 90.5 2.4 5.3E-05 48.0 12.1 88 405-510 266-354 (697)
306 PF14561 TPR_20: Tetratricopep 90.5 3.2 7E-05 33.4 9.5 64 418-496 8-73 (90)
307 KOG4814 Uncharacterized conser 90.5 2.4 5.2E-05 45.7 10.8 69 446-514 353-427 (872)
308 PF10300 DUF3808: Protein of u 90.4 4 8.6E-05 43.8 12.9 67 447-513 267-337 (468)
309 KOG1070 rRNA processing protei 90.4 5.3 0.00012 47.0 14.1 66 448-513 1531-1596(1710)
310 PF04910 Tcf25: Transcriptiona 90.3 3.5 7.6E-05 42.5 11.9 101 411-516 7-138 (360)
311 KOG2422 Uncharacterized conser 90.1 7.4 0.00016 41.7 13.8 116 328-482 256-378 (665)
312 KOG2610 Uncharacterized conser 90.0 1.3 2.9E-05 44.0 7.9 89 410-513 187-281 (491)
313 COG4700 Uncharacterized protei 89.9 9.1 0.0002 35.2 12.5 93 401-507 127-219 (251)
314 PRK10941 hypothetical protein; 89.8 2.5 5.5E-05 41.6 9.8 78 399-491 182-259 (269)
315 cd02682 MIT_AAA_Arch MIT: doma 89.7 1.6 3.4E-05 33.8 6.5 36 396-431 4-39 (75)
316 PF08424 NRDE-2: NRDE-2, neces 89.6 6.3 0.00014 40.0 13.1 125 419-547 6-132 (321)
317 COG4976 Predicted methyltransf 89.5 0.69 1.5E-05 43.6 5.3 59 407-480 4-62 (287)
318 COG5191 Uncharacterized conser 89.4 0.88 1.9E-05 44.8 6.1 73 447-520 107-180 (435)
319 COG3898 Uncharacterized membra 89.0 4.5 9.8E-05 41.2 10.9 107 407-523 197-303 (531)
320 PLN03077 Protein ECB2; Provisi 88.8 3.7 8.1E-05 47.7 12.1 26 401-426 557-582 (857)
321 COG2976 Uncharacterized protei 88.7 7.7 0.00017 35.9 11.3 96 412-507 48-152 (207)
322 PF07720 TPR_3: Tetratricopept 88.5 1.6 3.4E-05 28.5 5.0 33 482-514 2-36 (36)
323 PF09613 HrpB1_HrpK: Bacterial 88.5 5.2 0.00011 35.8 9.9 80 446-528 43-122 (160)
324 KOG0292 Vesicle coat complex C 88.2 2.4 5.3E-05 47.3 9.0 120 395-514 988-1117(1202)
325 cd02683 MIT_1 MIT: domain cont 88.1 1.5 3.2E-05 34.2 5.6 34 397-430 5-38 (77)
326 PF13281 DUF4071: Domain of un 88.1 13 0.00028 38.3 13.9 105 447-551 141-260 (374)
327 PF02259 FAT: FAT domain; Int 88.1 9.4 0.0002 38.8 13.4 117 397-525 145-301 (352)
328 TIGR03504 FimV_Cterm FimV C-te 87.8 2.1 4.5E-05 29.4 5.5 25 485-509 3-27 (44)
329 PF09986 DUF2225: Uncharacteri 87.4 3.5 7.7E-05 39.1 8.9 85 396-489 123-208 (214)
330 KOG2796 Uncharacterized conser 87.4 10 0.00022 36.7 11.7 115 390-505 121-236 (366)
331 PF07721 TPR_4: Tetratricopept 87.2 0.88 1.9E-05 27.1 3.0 23 483-505 3-25 (26)
332 KOG1070 rRNA processing protei 86.5 4.5 9.8E-05 47.6 10.4 108 391-513 1520-1632(1710)
333 PF10345 Cohesin_load: Cohesin 86.4 9 0.00019 42.7 12.8 125 389-515 294-446 (608)
334 PF09613 HrpB1_HrpK: Bacterial 86.1 25 0.00055 31.5 14.6 82 447-529 10-91 (160)
335 KOG3617 WD40 and TPR repeat-co 86.0 7.3 0.00016 43.5 11.1 63 448-510 913-996 (1416)
336 KOG2114 Vacuolar assembly/sort 85.9 8 0.00017 43.2 11.5 32 398-429 368-399 (933)
337 cd02677 MIT_SNX15 MIT: domain 85.9 2.5 5.4E-05 32.7 5.7 36 395-430 3-38 (75)
338 cd02684 MIT_2 MIT: domain cont 85.7 2.6 5.5E-05 32.7 5.7 36 395-430 3-38 (75)
339 PRK13184 pknD serine/threonine 85.4 6.6 0.00014 45.5 11.1 100 403-515 480-586 (932)
340 KOG2422 Uncharacterized conser 85.3 12 0.00026 40.2 12.0 120 402-524 239-386 (665)
341 cd02656 MIT MIT: domain contai 84.7 3.5 7.5E-05 31.8 6.1 35 396-430 4-38 (75)
342 COG5091 SGT1 Suppressor of G2 84.4 5.2 0.00011 38.6 8.1 126 405-537 2-133 (368)
343 PF04212 MIT: MIT (microtubule 84.4 3.1 6.6E-05 31.5 5.6 35 396-430 3-37 (69)
344 cd02681 MIT_calpain7_1 MIT: do 84.1 4.9 0.00011 31.2 6.6 34 397-430 5-38 (76)
345 PF10255 Paf67: RNA polymerase 84.1 1.7 3.6E-05 45.2 5.2 59 451-509 126-192 (404)
346 cd02678 MIT_VPS4 MIT: domain c 83.8 4.4 9.4E-05 31.3 6.3 36 395-430 3-38 (75)
347 PF10602 RPN7: 26S proteasome 83.1 32 0.0007 31.5 12.8 65 447-511 36-103 (177)
348 PF05843 Suf: Suppressor of fo 82.6 9.9 0.00021 37.7 10.0 99 449-549 3-102 (280)
349 PF14863 Alkyl_sulf_dimr: Alky 82.0 4.2 9.1E-05 35.8 6.2 51 448-498 71-121 (141)
350 smart00745 MIT Microtubule Int 82.0 7.4 0.00016 30.1 7.0 36 395-430 5-40 (77)
351 PF10516 SHNi-TPR: SHNi-TPR; 81.7 2.8 6E-05 27.7 3.8 30 448-477 2-31 (38)
352 KOG2561 Adaptor protein NUB1, 81.0 32 0.00069 35.8 12.6 110 396-509 161-295 (568)
353 PF13281 DUF4071: Domain of un 80.9 11 0.00023 39.0 9.5 69 448-516 180-261 (374)
354 COG3118 Thioredoxin domain-con 80.3 7.9 0.00017 38.2 7.9 54 453-506 140-193 (304)
355 KOG1550 Extracellular protein 80.2 15 0.00032 40.4 11.1 91 403-512 293-395 (552)
356 KOG1463 26S proteasome regulat 80.0 19 0.00041 36.2 10.4 117 398-527 209-329 (411)
357 PF11817 Foie-gras_1: Foie gra 79.7 6.6 0.00014 38.2 7.4 63 403-474 183-245 (247)
358 COG3914 Spy Predicted O-linked 79.7 25 0.00054 38.0 11.9 68 447-514 101-175 (620)
359 PF07721 TPR_4: Tetratricopept 79.6 2.8 6.1E-05 24.9 3.0 24 448-471 2-25 (26)
360 KOG2300 Uncharacterized conser 79.2 42 0.00092 35.5 13.0 103 410-513 287-399 (629)
361 PF08424 NRDE-2: NRDE-2, neces 78.5 12 0.00026 37.9 9.2 82 468-551 6-99 (321)
362 COG2909 MalT ATP-dependent tra 78.0 53 0.0011 37.4 14.2 107 401-513 418-529 (894)
363 PF09670 Cas_Cas02710: CRISPR- 77.1 29 0.00063 36.1 11.7 101 397-510 130-270 (379)
364 cd02680 MIT_calpain7_2 MIT: do 76.7 11 0.00025 29.1 6.3 35 396-430 4-38 (75)
365 PF04910 Tcf25: Transcriptiona 74.8 35 0.00076 35.2 11.4 115 395-525 100-234 (360)
366 PF07720 TPR_3: Tetratricopept 74.5 11 0.00023 24.6 4.9 32 449-480 3-36 (36)
367 cd02682 MIT_AAA_Arch MIT: doma 74.4 15 0.00033 28.4 6.5 19 496-514 28-46 (75)
368 PF10373 EST1_DNA_bind: Est1 D 74.0 12 0.00026 36.6 7.7 59 466-525 1-59 (278)
369 TIGR02561 HrpB1_HrpK type III 73.5 33 0.00071 30.4 9.1 50 449-498 46-95 (153)
370 COG0790 FOG: TPR repeat, SEL1 73.3 47 0.001 32.8 11.8 96 401-512 112-222 (292)
371 KOG1839 Uncharacterized protei 73.0 15 0.00032 43.3 8.7 107 396-510 930-1044(1236)
372 cd02683 MIT_1 MIT: domain cont 72.5 27 0.00059 27.1 7.6 17 497-513 29-45 (77)
373 PF10373 EST1_DNA_bind: Est1 D 72.3 14 0.0003 36.2 7.7 62 417-493 1-62 (278)
374 PF09205 DUF1955: Domain of un 72.1 45 0.00098 29.0 9.3 61 450-510 88-149 (161)
375 PF11817 Foie-gras_1: Foie gra 71.6 31 0.00067 33.5 9.7 85 413-506 153-243 (247)
376 KOG0529 Protein geranylgeranyl 70.9 23 0.0005 36.6 8.7 93 459-552 87-184 (421)
377 KOG3617 WD40 and TPR repeat-co 70.7 24 0.00051 39.7 9.1 100 409-509 811-940 (1416)
378 KOG1550 Extracellular protein 70.5 60 0.0013 35.7 12.7 82 410-510 340-426 (552)
379 cd02679 MIT_spastin MIT: domai 69.9 33 0.00071 26.8 7.5 65 395-459 5-75 (79)
380 COG0790 FOG: TPR repeat, SEL1 69.2 84 0.0018 31.0 12.6 80 415-514 172-270 (292)
381 KOG2047 mRNA splicing factor [ 68.4 51 0.0011 36.2 10.8 112 396-512 423-542 (835)
382 COG4455 ImpE Protein of avirul 68.3 43 0.00093 31.8 9.1 60 456-515 10-69 (273)
383 KOG1464 COP9 signalosome, subu 68.1 14 0.00031 35.8 6.2 52 459-510 39-94 (440)
384 PF00244 14-3-3: 14-3-3 protei 68.1 20 0.00044 34.6 7.4 54 414-475 142-197 (236)
385 PF10579 Rapsyn_N: Rapsyn N-te 68.0 55 0.0012 25.6 8.2 57 453-509 12-71 (80)
386 TIGR03504 FimV_Cterm FimV C-te 67.8 9.1 0.0002 26.2 3.5 26 451-476 3-28 (44)
387 TIGR02710 CRISPR-associated pr 67.7 55 0.0012 33.9 10.8 103 398-510 130-275 (380)
388 KOG2581 26S proteasome regulat 67.4 20 0.00044 36.9 7.3 66 449-514 211-280 (493)
389 KOG0889 Histone acetyltransfer 66.8 37 0.00079 44.3 10.7 85 446-532 2811-2903(3550)
390 PF01239 PPTA: Protein prenylt 66.4 17 0.00037 22.4 4.4 29 466-494 2-30 (31)
391 KOG0530 Protein farnesyltransf 65.3 1.4E+02 0.003 29.3 12.1 105 390-515 41-147 (318)
392 PF11846 DUF3366: Domain of un 65.2 23 0.0005 32.8 7.1 51 463-514 127-177 (193)
393 PF10345 Cohesin_load: Cohesin 64.5 1.4E+02 0.0031 33.2 14.3 106 396-511 57-169 (608)
394 cd02680 MIT_calpain7_2 MIT: do 64.3 42 0.00092 25.9 7.0 24 487-510 12-35 (75)
395 COG2912 Uncharacterized conser 63.4 31 0.00066 33.8 7.6 74 402-490 185-258 (269)
396 KOG2047 mRNA splicing factor [ 63.2 93 0.002 34.3 11.5 67 448-514 103-171 (835)
397 PF14863 Alkyl_sulf_dimr: Alky 62.5 44 0.00095 29.4 7.8 50 479-529 68-117 (141)
398 KOG1839 Uncharacterized protei 62.1 21 0.00045 42.2 7.1 107 398-511 973-1087(1236)
399 PF11207 DUF2989: Protein of u 61.6 60 0.0013 30.3 8.8 54 447-501 141-198 (203)
400 COG3898 Uncharacterized membra 60.5 2.2E+02 0.0047 29.6 13.4 50 459-508 166-215 (531)
401 KOG0739 AAA+-type ATPase [Post 60.2 40 0.00087 33.5 7.7 37 394-430 6-42 (439)
402 cd02678 MIT_VPS4 MIT: domain c 58.5 62 0.0014 24.8 7.3 16 498-513 30-45 (75)
403 KOG1497 COP9 signalosome, subu 58.1 1.6E+02 0.0035 29.6 11.4 90 444-535 100-199 (399)
404 COG3914 Spy Predicted O-linked 57.9 1.3E+02 0.0029 32.7 11.6 69 453-522 73-142 (620)
405 KOG2041 WD40 repeat protein [G 57.8 25 0.00055 38.7 6.4 93 401-506 762-877 (1189)
406 COG2178 Predicted RNA-binding 56.7 75 0.0016 29.5 8.4 101 398-507 29-147 (204)
407 PF04212 MIT: MIT (microtubule 56.4 43 0.00093 25.1 6.0 22 487-508 11-32 (69)
408 KOG3807 Predicted membrane pro 56.3 2.1E+02 0.0045 29.0 11.8 93 414-506 232-336 (556)
409 PF15469 Sec5: Exocyst complex 55.9 71 0.0015 29.2 8.5 25 406-430 94-118 (182)
410 cd02679 MIT_spastin MIT: domai 55.4 64 0.0014 25.2 6.8 17 462-478 4-20 (79)
411 cd02656 MIT MIT: domain contai 55.0 72 0.0016 24.3 7.1 17 497-513 29-45 (75)
412 KOG1310 WD40 repeat protein [G 54.9 41 0.0009 35.9 7.2 69 460-529 387-458 (758)
413 smart00745 MIT Microtubule Int 54.9 56 0.0012 25.0 6.5 17 497-513 31-47 (77)
414 COG4649 Uncharacterized protei 54.8 1.7E+02 0.0038 26.8 12.2 97 401-509 97-195 (221)
415 COG4455 ImpE Protein of avirul 54.6 2E+02 0.0043 27.4 11.4 93 406-513 9-118 (273)
416 COG5159 RPN6 26S proteasome re 54.4 1.7E+02 0.0037 29.0 10.7 63 402-471 7-69 (421)
417 KOG3540 Beta amyloid precursor 54.4 1.8E+02 0.004 30.7 11.5 108 398-514 267-381 (615)
418 KOG0985 Vesicle coat protein c 53.9 2E+02 0.0042 33.8 12.4 102 403-510 1053-1162(1666)
419 KOG0529 Protein geranylgeranyl 53.7 1.4E+02 0.003 31.1 10.6 89 413-516 90-184 (421)
420 cd00280 TRFH Telomeric Repeat 53.6 69 0.0015 29.5 7.5 48 451-499 115-162 (200)
421 KOG3783 Uncharacterized conser 53.0 1.1E+02 0.0023 33.0 9.9 72 402-487 271-342 (546)
422 KOG0530 Protein farnesyltransf 52.7 82 0.0018 30.8 8.3 86 459-545 55-141 (318)
423 KOG1464 COP9 signalosome, subu 52.3 51 0.0011 32.2 6.8 105 403-510 150-260 (440)
424 cd02684 MIT_2 MIT: domain cont 50.9 1.1E+02 0.0024 23.5 7.7 17 497-513 29-45 (75)
425 PF04781 DUF627: Protein of un 50.5 1.5E+02 0.0033 24.8 10.2 62 453-514 2-77 (111)
426 KOG3783 Uncharacterized conser 50.5 1.6E+02 0.0035 31.7 10.8 66 449-514 451-524 (546)
427 PF04053 Coatomer_WDAD: Coatom 49.0 49 0.0011 35.2 6.9 24 449-472 349-372 (443)
428 COG4941 Predicted RNA polymera 48.7 1.6E+02 0.0035 29.8 9.9 64 450-513 332-397 (415)
429 PF07079 DUF1347: Protein of u 48.1 81 0.0018 33.2 7.9 60 398-473 462-521 (549)
430 PF08238 Sel1: Sel1 repeat; I 45.3 48 0.001 21.1 4.2 30 481-510 1-37 (39)
431 smart00101 14_3_3 14-3-3 homol 44.1 87 0.0019 30.3 7.2 54 414-475 144-199 (244)
432 PF03097 BRO1: BRO1-like domai 43.7 3E+02 0.0064 28.4 11.9 60 481-540 239-311 (377)
433 cd09034 BRO1_Alix_like Protein 43.5 2E+02 0.0043 29.3 10.4 30 481-510 251-280 (345)
434 smart00671 SEL1 Sel1-like repe 43.3 51 0.0011 20.4 4.0 29 482-510 2-34 (36)
435 PF10952 DUF2753: Protein of u 42.8 1.2E+02 0.0026 26.0 6.8 64 450-513 4-86 (140)
436 smart00386 HAT HAT (Half-A-TPR 42.6 62 0.0013 19.2 4.2 19 496-514 2-20 (33)
437 KOG0546 HSP90 co-chaperone CPR 41.3 22 0.00048 35.9 2.8 50 447-496 309-358 (372)
438 PF15015 NYD-SP12_N: Spermatog 41.2 2.4E+02 0.0052 29.6 9.9 54 461-514 197-261 (569)
439 KOG0985 Vesicle coat protein c 41.0 62 0.0013 37.5 6.3 34 391-424 1097-1130(1666)
440 cd02677 MIT_SNX15 MIT: domain 40.9 1.6E+02 0.0034 22.8 6.9 43 495-542 20-69 (75)
441 COG5159 RPN6 26S proteasome re 40.9 2.3E+02 0.0049 28.2 9.3 106 398-512 206-316 (421)
442 PF09797 NatB_MDM20: N-acetylt 40.7 1.3E+02 0.0028 31.0 8.6 46 461-506 197-242 (365)
443 KOG4563 Cell cycle-regulated h 40.3 61 0.0013 33.0 5.6 66 394-466 37-102 (400)
444 PF07219 HemY_N: HemY protein 40.1 1.6E+02 0.0034 24.4 7.4 49 448-496 60-108 (108)
445 COG2909 MalT ATP-dependent tra 40.1 3.7E+02 0.0081 30.9 12.1 84 403-496 463-552 (894)
446 COG3629 DnrI DNA-binding trans 40.1 1.1E+02 0.0024 30.3 7.3 64 398-476 153-216 (280)
447 PF09122 DUF1930: Domain of un 39.8 36 0.00078 25.0 2.9 21 91-111 36-56 (68)
448 PRK15180 Vi polysaccharide bio 39.5 2.6E+02 0.0056 29.8 10.0 85 409-508 300-384 (831)
449 PF11207 DUF2989: Protein of u 39.4 62 0.0013 30.3 5.2 56 400-467 143-198 (203)
450 KOG1811 Predicted Zn2+-binding 39.2 1.3E+02 0.0029 32.7 8.1 59 459-520 568-626 (1141)
451 PRK13184 pknD serine/threonine 38.8 2.6E+02 0.0056 32.8 11.1 77 450-528 555-640 (932)
452 PRK10869 recombination and rep 38.8 2.9E+02 0.0064 30.3 11.3 49 465-513 248-296 (553)
453 KOG4459 Membrane-associated pr 38.8 82 0.0018 33.1 6.4 114 399-523 32-174 (471)
454 cd02681 MIT_calpain7_1 MIT: do 38.4 1.4E+02 0.0029 23.2 6.2 16 493-508 18-33 (76)
455 PF01535 PPR: PPR repeat; Int 38.3 50 0.0011 19.5 3.2 25 450-474 3-27 (31)
456 KOG3616 Selective LIM binding 38.2 1.2E+02 0.0026 34.0 7.7 46 460-507 745-791 (1636)
457 COG3947 Response regulator con 38.1 1.3E+02 0.0028 29.9 7.3 48 481-529 279-326 (361)
458 TIGR02561 HrpB1_HrpK type III 37.8 3E+02 0.0064 24.5 12.4 80 448-528 11-90 (153)
459 PF12854 PPR_1: PPR repeat 37.2 89 0.0019 19.7 4.3 26 480-505 6-31 (34)
460 KOG3677 RNA polymerase I-assoc 36.9 64 0.0014 33.5 5.2 98 451-548 276-376 (525)
461 COG4649 Uncharacterized protei 36.6 1.8E+02 0.0039 26.7 7.4 50 444-494 164-213 (221)
462 PF04190 DUF410: Protein of un 36.5 3.8E+02 0.0083 26.1 10.7 99 397-505 9-114 (260)
463 cd09241 BRO1_ScRim20-like Prot 36.3 4.9E+02 0.011 26.7 11.9 29 481-509 237-265 (355)
464 KOG0880 Peptidyl-prolyl cis-tr 36.3 43 0.00094 30.9 3.6 41 291-337 134-177 (217)
465 PF12925 APP_E2: E2 domain of 35.6 3.7E+02 0.008 25.0 10.7 67 446-513 97-165 (193)
466 COG5191 Uncharacterized conser 35.0 38 0.00083 33.7 3.2 61 410-485 119-180 (435)
467 PF04053 Coatomer_WDAD: Coatom 34.6 2.2E+02 0.0048 30.3 9.2 47 458-509 329-375 (443)
468 PRK15180 Vi polysaccharide bio 34.2 6.1E+02 0.013 27.2 12.0 66 464-530 759-824 (831)
469 PF13812 PPR_3: Pentatricopept 33.4 1.1E+02 0.0023 18.5 4.3 27 449-475 3-29 (34)
470 PF12063 DUF3543: Domain of un 32.9 3.9E+02 0.0085 25.8 9.8 95 414-509 69-194 (238)
471 cd00632 Prefoldin_beta Prefold 32.6 2.8E+02 0.0061 22.7 8.9 56 449-509 18-73 (105)
472 TIGR00756 PPR pentatricopeptid 32.2 96 0.0021 18.6 3.9 25 450-474 3-27 (35)
473 PF12652 CotJB: CotJB protein; 32.0 2.1E+02 0.0045 22.4 6.2 53 490-543 4-56 (78)
474 PHA02872 EFc gene family prote 31.8 1.3E+02 0.0028 24.9 5.2 47 260-310 29-76 (124)
475 KOG0276 Vesicle coat complex C 31.6 1E+02 0.0023 33.6 6.0 50 456-510 646-695 (794)
476 PF12739 TRAPPC-Trs85: ER-Golg 31.2 3.4E+02 0.0073 28.6 10.0 102 400-510 210-329 (414)
477 PLN00122 serine/threonine prot 31.2 2.2E+02 0.0048 25.9 7.2 69 478-546 94-162 (170)
478 KOG2396 HAT (Half-A-TPR) repea 30.9 1.8E+02 0.004 31.1 7.5 58 412-484 119-177 (568)
479 PF03745 DUF309: Domain of unk 30.6 2.2E+02 0.0048 21.0 6.0 59 403-470 4-62 (62)
480 PF05688 DUF824: Salmonella re 30.3 84 0.0018 21.9 3.4 36 42-86 6-41 (47)
481 KOG2709 Uncharacterized conser 30.2 1.7E+02 0.0037 30.4 6.9 74 448-530 23-100 (560)
482 PRK11619 lytic murein transgly 30.2 3.1E+02 0.0067 30.8 9.8 54 456-509 321-374 (644)
483 KOG0276 Vesicle coat complex C 29.6 4.3E+02 0.0092 29.2 10.0 27 400-426 668-694 (794)
484 KOG2041 WD40 repeat protein [G 29.4 1.9E+02 0.004 32.3 7.4 55 457-511 770-826 (1189)
485 PF15469 Sec5: Exocyst complex 29.2 1.6E+02 0.0035 26.8 6.4 46 492-537 97-145 (182)
486 PF00244 14-3-3: 14-3-3 protei 28.2 3.1E+02 0.0067 26.4 8.3 56 451-506 5-62 (236)
487 cd09243 BRO1_Brox_like Protein 27.9 6.8E+02 0.015 25.7 11.2 16 415-430 211-226 (353)
488 PF03745 DUF309: Domain of unk 27.8 2.3E+02 0.005 20.9 5.7 29 485-513 3-31 (62)
489 COG5187 RPN7 26S proteasome re 27.7 3.3E+02 0.0071 27.1 8.1 63 447-509 115-183 (412)
490 COG1747 Uncharacterized N-term 27.7 7.4E+02 0.016 26.9 11.1 123 391-514 125-292 (711)
491 PF09670 Cas_Cas02710: CRISPR- 27.4 6E+02 0.013 26.4 10.8 62 449-510 133-198 (379)
492 PF13041 PPR_2: PPR repeat fam 26.9 1.5E+02 0.0032 20.2 4.5 34 480-513 2-37 (50)
493 KOG4563 Cell cycle-regulated h 26.6 1.1E+02 0.0023 31.3 4.8 56 449-504 43-106 (400)
494 KOG1914 mRNA cleavage and poly 26.5 3.7E+02 0.0081 29.2 8.9 62 447-509 20-81 (656)
495 PF02184 HAT: HAT (Half-A-TPR) 26.4 1.4E+02 0.003 19.0 3.5 18 496-513 2-19 (32)
496 cd08977 SusD starch binding ou 26.0 6.2E+02 0.013 25.7 10.8 29 482-510 177-210 (359)
497 PF07163 Pex26: Pex26 protein; 25.7 5.8E+02 0.013 25.4 9.4 111 403-515 40-151 (309)
498 PF08969 USP8_dimer: USP8 dime 25.6 1.3E+02 0.0029 25.1 4.7 44 388-431 28-71 (115)
499 KOG1463 26S proteasome regulat 25.1 5.2E+02 0.011 26.4 9.1 65 446-510 127-197 (411)
500 KOG2582 COP9 signalosome, subu 24.8 1.1E+02 0.0023 31.4 4.4 100 399-509 103-211 (422)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-68 Score=525.05 Aligned_cols=355 Identities=38% Similarity=0.604 Sum_probs=332.2
Q ss_pred ecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCC
Q 008788 161 NEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240 (553)
Q Consensus 161 ~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~ 240 (553)
.+|.|+++|..||.|.+||++++.||+.|+||.++.|+.|.+|.++++.||..++.+|+.|+. ..++
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g~~-------------~~pp 67 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKGEA-------------GSPP 67 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCcccccccccccccccccc-------------CCCC
Confidence 379999999999999999999999999999998899999999999999999999999998442 4678
Q ss_pred CCCCCceEEEEEEEeeeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCe
Q 008788 241 VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPL 320 (553)
Q Consensus 241 ~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~ 320 (553)
.||++++|.|+|+|+ ||+|+|+|+++|.|+ ..+|..|..|+|||.|++.+ + +|+++. ..|
T Consensus 68 ~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~V~v~~~G~~~~--~-~f~~~~-----~~f 127 (397)
T KOG0543|consen 68 KIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAVVKVHLEGELED--G-VFDQRE-----LRF 127 (397)
T ss_pred CCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcEEEEEEEEEECC--c-ceeccc-----cce
Confidence 899999999999998 999999999999996 35789999999999999976 4 675443 348
Q ss_pred EEEeCC-CCchhHHHHHHhcCCCCcEEEEEeCCCCccc-CCCCCCCCCCCCeEEEEEEEeeee-cCCCCCCCChhhHHHH
Q 008788 321 EFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIELLGFE-KPKDWTGLSFDGIMDE 397 (553)
Q Consensus 321 ~f~lG~-~~v~~g~e~~l~~M~~GE~~~~~~~~~~~yg-~~g~~~~ip~~~~l~~~ieL~~~~-~~~~~~~~~~~e~~~~ 397 (553)
+|.+|+ ..||.||+.||+.|++||++.|+|+|+|+|| ..++++.|||++++.|+|+|+++. .....|.|..++++..
T Consensus 128 e~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~ 207 (397)
T KOG0543|consen 128 EFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEA 207 (397)
T ss_pred EEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHH
Confidence 899998 5899999999999999999999999999999 667888999999999999999999 6666777888889999
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
|...|++||.+|+.|+|..|...|.+|+++|++..+.++++.++...++..||+|+|+||+|+++|.+|+.+|+++|+++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLG 549 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~ 549 (553)
|+|+|||||+|+|+..+++|+.|+.+|++|++++|+| .+++.+|..|++++++++.+++++|+|||++.+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999998 5799999999999999999999999999999774
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=289.34 Aligned_cols=277 Identities=26% Similarity=0.347 Sum_probs=243.6
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCCc
Q 008788 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (553)
Q Consensus 265 ~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~GE 344 (553)
.-.+|.|+||..|.|..|..+ .|.+|++||.....++.+++++||+. .|+|+++++|.-.-++-||.+|.+|+++|
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~E 83 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHE 83 (329)
T ss_pred cchhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence 446789999999999988664 69999999999999988999999986 59999999999999999999999999999
Q ss_pred EEEEEeCCCC--------------cccCCCCC-------CC--C--------------CCCCeEEEEEEEeeeecCC---
Q 008788 345 IALVTCPPDY--------------AYDKFLRP-------AN--V--------------PEGAHIQWEIELLGFEKPK--- 384 (553)
Q Consensus 345 ~~~~~~~~~~--------------~yg~~g~~-------~~--i--------------p~~~~l~~~ieL~~~~~~~--- 384 (553)
++.|+|.-.. +-|+.... .. + ..-.+|+|.++|+.++.|.
T Consensus 84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 9999995421 11221100 00 0 0015799999999998874
Q ss_pred -CCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhhhHHHHHHHHHHHH
Q 008788 385 -DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLK 459 (553)
Q Consensus 385 -~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~----~~~~~ee~~~~~~~~~~~~~nla~~~~k 459 (553)
+.|.|+.++++.....++++||.+|+.|+|.+|..+|+.|+..+..+ .|.+ .||.++......+++|.|+|+++
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-~eW~eLdk~~tpLllNy~QC~L~ 242 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE-PEWLELDKMITPLLLNYCQCLLK 242 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHHHhhhHHHHhHHHHHhh
Confidence 45789999999999999999999999999999999999999988765 3443 67888888889999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008788 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENS 539 (553)
Q Consensus 460 l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (553)
.++|.+++++|+.+|..+|.|+|||||||+|+....+.++|.++|.++|+++|+-.+.+.++|+.+..++++.+..+|-.
T Consensus 243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~ 322 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLR 322 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHhhccc
Q 008788 540 LKGCLTR 546 (553)
Q Consensus 540 ~~~mf~~ 546 (553)
|.+||+.
T Consensus 323 ~~kmfs~ 329 (329)
T KOG0545|consen 323 CRKMFSQ 329 (329)
T ss_pred HHHhcCC
Confidence 9999974
No 3
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-35 Score=288.36 Aligned_cols=347 Identities=24% Similarity=0.359 Sum_probs=266.0
Q ss_pred ecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccC
Q 008788 37 RPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116 (553)
Q Consensus 37 ~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g 116 (553)
++|.|..+|..||.|.+||++++.||+.||||.+ +.|+.|.+|.|+++.||..++..|+. |
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g 61 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G 61 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence 4799998899999999999999999999999985 78999999999999999999999998 5
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEEEEeeeccccccCCCCeEEEEEecCCC-cCCCCCCceEEEEEEEEeCCCcEEeecCCC
Q 008788 117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREG 195 (553)
Q Consensus 117 ~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~~~~i~~~g~g-~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~ 195 (553)
+.+.| +.||++++|+|+|++. |.+++++|+++|.| ..+|..|..|+|||.+++.++ +|+++.-
T Consensus 62 ~~~~p----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~- 125 (397)
T KOG0543|consen 62 EAGSP----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL- 125 (397)
T ss_pred ccCCC----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-
Confidence 55554 7899999999999998 78999999999999 899999999999999998888 6665432
Q ss_pred CceEEEcCC-CCccchHHHhhccCCcCcEEEEEEeCCccCCC--CCCCCCCCCceEEEEEEEeeeeeeeeccCCCceEEE
Q 008788 196 EPYFFTFGK-SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 272 (553)
Q Consensus 196 ~p~~~~~g~-~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~--~~~~~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~ 272 (553)
.|.|..|+ ..++.||+.+|..|++||.+.|+|+|+|+||+ ..++.||||++|.|+|+|++|.-..+.+
T Consensus 126 -~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s-------- 196 (397)
T KOG0543|consen 126 -RFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDES-------- 196 (397)
T ss_pred -ceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccc--------
Confidence 37777777 47999999999999999999999999999995 4678999999999999999995211111
Q ss_pred EEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCC-chhHHHHHHhcCCCCcEEEEEeC
Q 008788 273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL-VPEGFEMCVRLMLPGEIALVTCP 351 (553)
Q Consensus 273 il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~-v~~g~e~~l~~M~~GE~~~~~~~ 351 (553)
+. .....++.+..+. .+.|+.+ |.-|.-. -..-++.|+..|.
T Consensus 197 ------~~-------~~~~e~l~~A~~~-ke~Gn~~-------------fK~gk~~~A~~~Yerav~~l~---------- 239 (397)
T KOG0543|consen 197 ------WK-------MFAEERLEAADRK-KERGNVL-------------FKEGKFKLAKKRYERAVSFLE---------- 239 (397)
T ss_pred ------cc-------cchHHHHHHHHHH-HHhhhHH-------------HhhchHHHHHHHHHHHHHHhh----------
Confidence 00 0000000000000 0012221 2222211 2333444443331
Q ss_pred CCCcccCCCCCCCCCCCCeEEEEEEEeeeecCCCCCCCChh-hHHH---HHHHHHhhhccccccCCHHHHHHHHHHHHHH
Q 008788 352 PDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD-GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (553)
Q Consensus 352 ~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~-e~~~---~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~ 427 (553)
|.. . .+.+ +... ....+.+.+-.+.+.++|..|+...+++|.
T Consensus 240 ----~~~-----~------------------------~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe- 285 (397)
T KOG0543|consen 240 ----YRR-----S------------------------FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE- 285 (397)
T ss_pred ----ccc-----c------------------------CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 000 0 0111 1111 233466888889999999999999999999
Q ss_pred hhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 008788 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEM 506 (553)
Q Consensus 428 l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A-~~~l~~ 506 (553)
++|.+ +.+++.+|.|++.+++|+.|+.++++|++++|+|..+.-.+..+.....++.+. .+.|.+
T Consensus 286 ---~~~~N-----------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 286 ---LDPNN-----------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred ---cCCCc-----------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887 789999999999999999999999999999999988888888888887776665 777887
Q ss_pred HHHhCC
Q 008788 507 MMKVDK 512 (553)
Q Consensus 507 al~l~P 512 (553)
.+..-+
T Consensus 352 mF~k~~ 357 (397)
T KOG0543|consen 352 MFAKLA 357 (397)
T ss_pred Hhhccc
Confidence 776544
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.1e-29 Score=216.51 Aligned_cols=171 Identities=21% Similarity=0.295 Sum_probs=140.5
Q ss_pred EEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccccc---cCCCCeEE
Q 008788 81 HVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKII---ADDFGVVK 157 (553)
Q Consensus 81 ~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~---~~d~g~~~ 157 (553)
|.+|.+.+++|++.++.+|+.|+++.+.+||+++||..+.. .-..++|.+.++.+..+... ..+..+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I 72 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG--------DLNILVITILLVLLFRASAAEKWNPDEELQI 72 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc--------cccceEEEeeeeehhhhhhhhhcCCCCceeE
Confidence 35788999999999999999999999999999999965542 13456777777665433211 13344444
Q ss_pred EEEecCC-CcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCC
Q 008788 158 KVINEGQ-GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTP 235 (553)
Q Consensus 158 ~i~~~g~-g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g 235 (553)
.++..-. .....+.||.|.+||++.+.||++||||. ++.|++|.||.+++|+||+.||.+|++||++.++|||+++||
T Consensus 73 ~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG 152 (188)
T KOG0549|consen 73 GVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYG 152 (188)
T ss_pred EEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCc
Confidence 4444311 34778899999999999999999999996 578999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCCceEEEEEEEeeeee
Q 008788 236 SPL-MPVVEGCEEVHFEVELVHLIQ 259 (553)
Q Consensus 236 ~~~-~~~i~~~~~l~~~v~l~~~~~ 259 (553)
+++ ++.||++++|+|||||+++.+
T Consensus 153 ~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 153 ERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred cCCCCCCCCCCeeEEEEEEEEEeec
Confidence 965 566999999999999999964
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=214.95 Aligned_cols=175 Identities=23% Similarity=0.323 Sum_probs=145.9
Q ss_pred EEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCceEEEEEEEeeeeee---eeccCCCceEEEEEec
Q 008788 200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQV---RDMLGDGRLIKRRIRD 276 (553)
Q Consensus 200 ~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~l~~~v~l~~~~~~---~d~~~dg~l~k~il~~ 276 (553)
+++|.+.++||++.+|.+|+.||++.+++||+++||.... ..--.++|.+.++.+... ..+..+..+.-.++++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~ 77 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---GDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKK 77 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---ccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEEC
Confidence 3578899999999999999999999999999999994321 122346777777776643 3455667777777777
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCCcEEEEEeCCCCcc
Q 008788 277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356 (553)
Q Consensus 277 G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~GE~~~~~~~~~~~y 356 (553)
-.... .....||.+.+||++.++| |++|+ |++. +++|++|.||.++||+|||.+|.+|++||+..++|||+++|
T Consensus 78 p~~C~--~kak~GD~l~~HY~g~leD--Gt~fd-SS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgY 151 (188)
T KOG0549|consen 78 PEECP--EKAKKGDTLHVHYTGSLED--GTKFD-SSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGY 151 (188)
T ss_pred Ccccc--ccccCCCEEEEEEEEEecC--CCEEe-eecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccC
Confidence 33221 2347899999999999987 99985 5554 68999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCeEEEEEEEeeeecC
Q 008788 357 DKFLRPANVPEGAHIQWEIELLGFEKP 383 (553)
Q Consensus 357 g~~g~~~~ip~~~~l~~~ieL~~~~~~ 383 (553)
|+.|.++.||+++.|.|+|||+++...
T Consensus 152 G~~G~~~~IP~~A~LiFdiELv~i~~~ 178 (188)
T KOG0549|consen 152 GERGAPPKIPGDAVLIFDIELVKIERG 178 (188)
T ss_pred ccCCCCCCCCCCeeEEEEEEEEEeecC
Confidence 999999899999999999999999874
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.9e-27 Score=179.79 Aligned_cols=106 Identities=30% Similarity=0.608 Sum_probs=102.3
Q ss_pred ceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEE
Q 008788 30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109 (553)
Q Consensus 30 g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~i 109 (553)
|+.++++++|+|...|++||+|++||++.+.||+.||||.+ ++.|+.|.+|.|++|.||++++..|.+|+++.++|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d----r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti 77 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD----RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI 77 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc----cCCCeeEEecCcceeechhhcchhccccccceeee
Confidence 68999999999998899999999999999999999999999 89999999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 110 p~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
.|++|||..|.| ..||||++|+|+|||+++
T Consensus 78 ~pd~aYG~~G~p----~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 78 SPDYAYGPRGHP----GGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccccCCCCCC----CccCCCcEEEEEEEEEec
Confidence 999999999965 789999999999999986
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-26 Score=207.61 Aligned_cols=112 Identities=31% Similarity=0.633 Sum_probs=106.1
Q ss_pred hhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCC
Q 008788 21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100 (553)
Q Consensus 21 ~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~ 100 (553)
+..+.++++||.|++++.|+|.. |..+|.|.+||+|++.||++|||+++ +++|+.|.+| ++|+||.++|.+|+
T Consensus 93 ~~~v~~~~sgl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~----rg~p~~f~l~--~vI~Gw~egl~~M~ 165 (205)
T COG0545 93 EKGVKTLPSGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYD----RGQPAEFPLG--GVIPGWDEGLQGMK 165 (205)
T ss_pred cCCceECCCCcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccc----cCCCceeecC--CeeehHHHHHhhCC
Confidence 45677899999999999999998 99999999999999999999999998 9999999996 99999999999999
Q ss_pred CCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 101 ~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
+|+++.++|||++|||.+|.+ ..||||++|+|+|+|+++
T Consensus 166 vG~k~~l~IP~~laYG~~g~~----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 166 VGGKRKLTIPPELAYGERGVP----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CCceEEEEeCchhccCcCCCC----CCCCCCCeEEEEEEEEec
Confidence 999999999999999999975 459999999999999987
No 8
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-25 Score=171.36 Aligned_cols=107 Identities=36% Similarity=0.597 Sum_probs=98.6
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCCcEEE
Q 008788 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 347 (553)
Q Consensus 268 ~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~GE~~~ 347 (553)
++.+.+|..|+|.+ .|++|++|++||+|.|.| |+.| ||+.+ +++||.|.+|.|+||.||+.++..|.+||++.
T Consensus 2 Gv~~~~i~~Gdg~t---fpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak 74 (108)
T KOG0544|consen 2 GVEKQVISPGDGRT---FPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK 74 (108)
T ss_pred CceeEEeeCCCCcc---cCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence 37789999999963 358999999999999987 9998 66666 68999999999999999999999999999999
Q ss_pred EEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeee
Q 008788 348 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (553)
Q Consensus 348 ~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~ 381 (553)
++|+|+||||..|.+..||||++|.|+|||++++
T Consensus 75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred eeeccccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 9999999999999999999999999999999763
No 9
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-23 Score=185.90 Aligned_cols=104 Identities=24% Similarity=0.333 Sum_probs=98.4
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeec-CCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (553)
Q Consensus 151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~-~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~ 229 (553)
..+|+.+.++..|.| ..|+.++.|+|||+|++.||++|||| .+|.|+.|.+| ++|+||.+||.+|++|++++++||
T Consensus 99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP 175 (205)
T COG0545 99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP 175 (205)
T ss_pred CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence 567999999999999 88999999999999999999999999 57999999998 999999999999999999999999
Q ss_pred CCccCCCCCC-CCCCCCceEEEEEEEeee
Q 008788 230 SQYLTPSPLM-PVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 230 ~~~~~g~~~~-~~i~~~~~l~~~v~l~~~ 257 (553)
|++|||.++. ..||||++|+|+|+|+++
T Consensus 176 ~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 176 PELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred chhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999874 449999999999999986
No 10
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=2.1e-22 Score=188.07 Aligned_cols=112 Identities=24% Similarity=0.453 Sum_probs=105.4
Q ss_pred hhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCC
Q 008788 21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100 (553)
Q Consensus 21 ~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~ 100 (553)
+.....+++|++|+|+++|+|.. |..||.|.+||++++.||++|+||+. ++.|+.|.+| .+++||+++|.+|+
T Consensus 94 ~~gv~~t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~----~g~P~~f~l~--~vipG~~eaL~~M~ 166 (206)
T PRK11570 94 KEGVNSTESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVA----RGEPAEFPVN--GVIPGWIEALTLMP 166 (206)
T ss_pred cCCcEECCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccC----CCCCeEEEee--chhhHHHHHHcCCC
Confidence 45778899999999999999997 99999999999999999999999997 7889999995 69999999999999
Q ss_pred CCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 101 ~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
+|+++.|+|||++|||..+.+ +.|||+++|+|+|+|++|
T Consensus 167 ~G~k~~~~IP~~lAYG~~g~~----~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 167 VGSKWELTIPHELAYGERGAG----ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CCCEEEEEECHHHcCCCCCCC----CCcCCCCeEEEEEEEEEE
Confidence 999999999999999999875 689999999999999987
No 11
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2e-22 Score=186.07 Aligned_cols=118 Identities=24% Similarity=0.473 Sum_probs=108.2
Q ss_pred CCChhhhhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceE-EEcCCCccchhH
Q 008788 15 APSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIR-HVLGKSKILLGL 92 (553)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~-~~~G~~~~~~g~ 92 (553)
.-.++..+..++.++||.|+.++.|+|.. |..|+.|.+||.+++. +|++|++++. +.|+. |.+|.+++|+||
T Consensus 106 ~~~ek~~~~~~tl~~Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-----~kp~~~f~lg~g~VIkG~ 179 (226)
T KOG0552|consen 106 KEVEKQKPKSRTLPGGLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNFG-----GKPFKLFRLGSGEVIKGW 179 (226)
T ss_pred ccccccCccceecCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeecccC-----CCCccccccCCCCCCchH
Confidence 33455555557889999999999999998 9999999999999998 9999999984 77888 999999999999
Q ss_pred HhhcCCCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 93 LEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 93 ~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
+.+|.||++|.+++|+|||++|||..+. +.||||++|+|+|+|+.+
T Consensus 180 d~gv~GMkvGGkRrviIPp~lgYg~~g~-----~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 180 DVGVEGMKVGGKRRVIIPPELGYGKKGV-----PEIPPNSTLVFDVELLSV 225 (226)
T ss_pred HHhhhhhccCCeeEEEeCccccccccCc-----CcCCCCCcEEEEEEEEec
Confidence 9999999999999999999999999987 489999999999999986
No 12
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.86 E-value=4.4e-21 Score=174.88 Aligned_cols=111 Identities=19% Similarity=0.326 Sum_probs=101.3
Q ss_pred cccCCCceEEEEEec--CCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788 24 MKIVPGSLMKAVMRP--GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (553)
Q Consensus 24 ~~~~~~g~~~~i~~~--G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~ 101 (553)
...+++|++|.+++. |+|.. |+.||.|.+||++++.||++|+|++. ..|+.|.+|.+++++||+++|.+|++
T Consensus 64 ~~~t~sGl~Y~v~~~~~g~g~~-p~~gd~V~v~Y~~~~~dG~v~~ss~~-----~~P~~f~vg~~~vi~Gl~e~L~~Mk~ 137 (177)
T TIGR03516 64 YETSQNGFWYYYNQKDTGEGTT-PEFGDLVTFEYDIRALDGDVIYSEEE-----LGPQTYKVDQQDLFSGLRDGLKLMKE 137 (177)
T ss_pred ceECCCccEEEEEEecCCCCCc-CCCCCEEEEEEEEEeCCCCEEEeCCC-----CCCEEEEeCCcchhHHHHHHHcCCCC
Confidence 367899999999987 55555 89999999999999999999999985 45999999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (553)
Q Consensus 102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~ 144 (553)
||+++|+|||++|||..|.+ ..||+|++|+|+|+|++|.
T Consensus 138 Ge~~~~~iP~~~AYG~~g~~----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 138 GETATFLFPSHKAYGYYGDQ----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CCEEEEEECHHHcCCCCCCC----CCcCcCCcEEEEEEEEEec
Confidence 99999999999999998865 6799999999999999985
No 13
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=4.3e-20 Score=178.78 Aligned_cols=114 Identities=25% Similarity=0.509 Sum_probs=104.9
Q ss_pred hhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCC
Q 008788 21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100 (553)
Q Consensus 21 ~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~ 100 (553)
+.+...+++||+|+|+++|+|.. |+.||.|.|||++++.||++|+|++. ++.|+.|.+ +.++|||+++|.+|+
T Consensus 138 ~~gv~~t~sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--~~vipG~~EaL~~Mk 210 (269)
T PRK10902 138 EKGVKTTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIK 210 (269)
T ss_pred CCCcEECCCccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeecccc----CCCceEEec--CCcchHHHHHHhcCC
Confidence 34567889999999999999997 89999999999999999999999997 788999998 469999999999999
Q ss_pred CCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeecc
Q 008788 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146 (553)
Q Consensus 101 ~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~ 146 (553)
+|+++.|+||++++||..+. ++||+|++|+|+|+|+++.+.
T Consensus 211 ~Gek~~l~IP~~laYG~~g~-----~gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 211 KGGKIKLVIPPELAYGKAGV-----PGIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred CCcEEEEEECchhhCCCCCC-----CCCCCCCcEEEEEEEEEeccC
Confidence 99999999999999999875 479999999999999999754
No 14
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.1e-20 Score=170.77 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=101.9
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeC-CCcEEeecCCCCceE-EEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG-DGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (553)
Q Consensus 151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~-~g~~~~s~~~~~p~~-~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v 228 (553)
...|+++.-++.|.| +.+..|+.|.|||.+++. +|.+|+++..+.|+. |.+|.+++|+||+.++.+|++|.+++|+|
T Consensus 118 l~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviI 196 (226)
T KOG0552|consen 118 LPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVII 196 (226)
T ss_pred cCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEe
Confidence 457999999999999 999999999999999998 999999999999999 99999999999999999999999999999
Q ss_pred eCCccCCCCCCCCCCCCceEEEEEEEeee
Q 008788 229 TSQYLTPSPLMPVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 229 ~~~~~~g~~~~~~i~~~~~l~~~v~l~~~ 257 (553)
||++|||.++.+.||+|++|+|+|+|+.+
T Consensus 197 Pp~lgYg~~g~~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 197 PPELGYGKKGVPEIPPNSTLVFDVELLSV 225 (226)
T ss_pred CccccccccCcCcCCCCCcEEEEEEEEec
Confidence 99999999999999999999999999986
No 15
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.81 E-value=2.1e-19 Score=163.90 Aligned_cols=107 Identities=20% Similarity=0.164 Sum_probs=98.1
Q ss_pred CCCCeEEEEEec--CCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788 151 DDFGVVKKVINE--GQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (553)
Q Consensus 151 ~d~g~~~~i~~~--g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v 228 (553)
...|+.+.++.+ |.| ..|+.||.|++||++++.||++|+|+....|+.|.+|.+++++||+++|.+|++||+++|+|
T Consensus 67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i 145 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF 145 (177)
T ss_pred CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence 456899988876 555 78999999999999999999999999877899999999999999999999999999999999
Q ss_pred eCCccCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788 229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLI 258 (553)
Q Consensus 229 ~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~ 258 (553)
||++|||..+ ...||+|++|+|+|+|+++.
T Consensus 146 P~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 146 PSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999864 46799999999999999984
No 16
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=171.25 Aligned_cols=125 Identities=28% Similarity=0.478 Sum_probs=117.3
Q ss_pred hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
+....|+.+|.+||.+++.++|.+|+.+|.+||. +.|.+ ..+|+|+|++|.++|+|..|+++|..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTN-----------AVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCc-----------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6778899999999999999999999999999999 88888 78999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788 473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK 533 (553)
Q Consensus 473 al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (553)
||.+||+..|+|-|+|.||..+|+|++|++.|++||.|||+|+ ..+..|+.+++++.+..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne-~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE-SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999985 68888888887776554
No 17
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=6.5e-19 Score=156.99 Aligned_cols=135 Identities=31% Similarity=0.554 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (553)
Q Consensus 392 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (553)
+..+..+..+|..||.+|+.|+|.+|...|..||..+..+ . .+.+..||.|+|.|++|++.|+.|+..|.
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~-------~e~rsIly~Nraaa~iKl~k~e~aI~dcs 158 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST---S-------TEERSILYSNRAAALIKLRKWESAIEDCS 158 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc---c-------HHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Confidence 3446789999999999999999999999999999964332 2 23457799999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008788 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE 537 (553)
Q Consensus 472 ~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~ 537 (553)
+||+++|.+.||+-|||.+|..+..|++|+.+|++.++++|.+. .+++.+.+|-.++.+.+++.+
T Consensus 159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~-ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR-EAREAIARLPPKINERNEKMK 223 (271)
T ss_pred hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH-HHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999974 788888888888877776654
No 18
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.78 E-value=2.1e-18 Score=161.18 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=97.4
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (553)
Q Consensus 150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v 228 (553)
..++|+.++++++|.| ..|+.+|.|.|||++++.||++|+|+. ++.|+.|.++ +++|||+++|.+|++|+++.|+|
T Consensus 99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 3567999999999999 789999999999999999999999986 5789999996 79999999999999999999999
Q ss_pred eCCccCCCCC-CCCCCCCceEEEEEEEeee
Q 008788 229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 229 ~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~ 257 (553)
||+++||..+ ++.|||+++|+|+|+|+++
T Consensus 176 P~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999964 4689999999999999987
No 19
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.78 E-value=2.6e-18 Score=141.75 Aligned_cols=94 Identities=35% Similarity=0.606 Sum_probs=86.5
Q ss_pred CCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCC
Q 008788 41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120 (553)
Q Consensus 41 g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~ 120 (553)
|...|+.||.|.+||++++.+|++|++++. .+.|+.|.+|.+++++||+.+|.+|++|+++.|.||++++||..+.
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~ 76 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ----EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL 76 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT----TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee----cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence 455689999999999999999999999986 6789999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCeEEEEEEEE
Q 008788 121 PVAAPSTFPKDEELHFEIEMI 141 (553)
Q Consensus 121 ~~~~~~~i~~~~~l~~~v~l~ 141 (553)
.. ..||++++|+|+|+|+
T Consensus 77 ~~---~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 77 EP---PKIPPNSTLVFEIELL 94 (94)
T ss_dssp CT---TTBTTTSEEEEEEEEE
T ss_pred CC---CCcCCCCeEEEEEEEC
Confidence 42 4699999999999986
No 20
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.74 E-value=2.1e-17 Score=136.34 Aligned_cols=91 Identities=31% Similarity=0.439 Sum_probs=83.8
Q ss_pred CcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCC--CC
Q 008788 165 GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PV 241 (553)
Q Consensus 165 g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~--~~ 241 (553)
|.+.|+.||.|++||++++.+|+.|+++. .+.|+.|.+|.+++++||+++|.+|++||++.|+|||+++||..+. ..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 34679999999999999999999999984 6789999999999999999999999999999999999999998654 45
Q ss_pred CCCCceEEEEEEEe
Q 008788 242 VEGCEEVHFEVELV 255 (553)
Q Consensus 242 i~~~~~l~~~v~l~ 255 (553)
||++++|+|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999985
No 21
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.72 E-value=5.7e-17 Score=157.15 Aligned_cols=106 Identities=24% Similarity=0.344 Sum_probs=98.7
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (553)
Q Consensus 150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v 228 (553)
..++|+.++++.+|.| ..|+.||.|+|||.+++.||++|+++. ++.|+.|.++ +++|||+++|.+|++|+++.|+|
T Consensus 143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEE
Confidence 3568999999999999 789999999999999999999999985 5789999885 69999999999999999999999
Q ss_pred eCCccCCCCCCCCCCCCceEEEEEEEeeee
Q 008788 229 TSQYLTPSPLMPVVEGCEEVHFEVELVHLI 258 (553)
Q Consensus 229 ~~~~~~g~~~~~~i~~~~~l~~~v~l~~~~ 258 (553)
|++++||..+.+.||+|++|+|+|+|+++.
T Consensus 220 P~~laYG~~g~~gIppns~LvfeVeLl~V~ 249 (269)
T PRK10902 220 PPELAYGKAGVPGIPANSTLVFDVELLDVK 249 (269)
T ss_pred CchhhCCCCCCCCCCCCCcEEEEEEEEEec
Confidence 999999998777899999999999999985
No 22
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.4e-16 Score=150.98 Aligned_cols=243 Identities=24% Similarity=0.354 Sum_probs=176.3
Q ss_pred EEEEEEEEEEecCCCcEEEeccCCC---CCCCeEEEeCCCCchhHHHHH--HhcCCCCcEE----EEEe--CCCCcccC-
Q 008788 291 LLCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMC--VRLMLPGEIA----LVTC--PPDYAYDK- 358 (553)
Q Consensus 291 ~V~v~y~~~~~~~~g~~~~~s~~~~---~~~~~~f~lG~~~v~~g~e~~--l~~M~~GE~~----~~~~--~~~~~yg~- 358 (553)
++++...| +|++|+.||.|+... +|..++| |+||.|.+.+ |...+..+.. .|.| ..++.-+.
T Consensus 110 lLSMAN~G--pNTNgSQFFITT~p~PHLdGkHVVF----GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 110 LLSMANRG--PNTNGSQFFITTVPTPHLDGKHVVF----GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSK 183 (372)
T ss_pred hhhhhcCC--CCCCCcceEEeCCCCCCcCCceeEE----eeEeechhHHHHHhccccccCCCCccceEeccccccccccc
Confidence 45566666 678899999998754 5677777 5688777654 4444444332 2222 12221110
Q ss_pred --CCCCCCCCCCCeEEEEEEEeeeec-CCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCC
Q 008788 359 --FLRPANVPEGAHIQWEIELLGFEK-PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435 (553)
Q Consensus 359 --~g~~~~ip~~~~l~~~ieL~~~~~-~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~ 435 (553)
....+.-+....-.++ ++.. ...|...+....+..++..++.|+..|+.++|..|...|.++++++.. .+.+
T Consensus 184 ~~~~~~a~~~~~sgd~~~----d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~-~s~~ 258 (372)
T KOG0546|consen 184 VKEDAGASEPDETGDSYE----DYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSE-QSRD 258 (372)
T ss_pred ccccccCCCCCCCCCccc----ccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcc-cccc
Confidence 0000000111111111 1110 112223345666778889999999999999999999999999999875 2222
Q ss_pred h-hH----HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 436 D-EE----GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 436 ~-ee----~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
. .+ ...+..++..++.|++.|-++++.|..|+..|..+++.++++.+||||+++++..+.++++|+++++.|...
T Consensus 259 ~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 259 REKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred cccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 1 11 233666777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788 511 DKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT 545 (553)
Q Consensus 511 ~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (553)
+|++ ..+.+++...+++..+++.++++.+++||+
T Consensus 339 ~p~d-~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 339 APND-KAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred Ccch-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9996 579999999999999999999999999995
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.4e-15 Score=152.28 Aligned_cols=109 Identities=31% Similarity=0.536 Sum_probs=100.3
Q ss_pred CCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788 387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (553)
Q Consensus 387 ~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (553)
..++.+++++.|..+|.+||.+|+.|+|++||.+|++||+ +.|.. ...|.|+|.||..+|+|++.
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~----l~p~e-----------piFYsNraAcY~~lgd~~~V 168 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE----LCPDE-----------PIFYSNRAACYESLGDWEKV 168 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh----cCCCC-----------chhhhhHHHHHHHHhhHHHH
Confidence 3578889999999999999999999999999999999999 56653 56899999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+++|.+||+++|+.+|||+||+.||..||++++|+.|+....-+
T Consensus 169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~ 212 (606)
T KOG0547|consen 169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL 212 (606)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence 99999999999999999999999999999999999998854433
No 24
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.63 E-value=9.3e-16 Score=147.16 Aligned_cols=121 Identities=26% Similarity=0.432 Sum_probs=110.0
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (553)
.++.+..+..++++||.+|++|+|++|+.||.+++. +.|.+ ..++.|+|++|++++.|..|..+|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~N-----------pV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA----VYPHN-----------PVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc----cCCCC-----------ccchhhHHHHHHHHHHHHHHHHhH
Confidence 566788888999999999999999999999999999 77766 568999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 471 ~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
+.|+.+|....|||-||+.|...||+..+|.++++.+|+|+|++ .+.++.+..+..
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~-~ELkK~~a~i~S 210 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN-IELKKSLARINS 210 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc-HHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999996 456666555543
No 25
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.63 E-value=5e-15 Score=132.60 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=74.4
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
++.||.|.+||++++.||++|+||+. .+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||..
T Consensus 5 i~~~~~V~v~Y~~~~~dG~v~dst~~----~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~------ 74 (156)
T PRK15095 5 VQSNSAVLVHFTLKLDDGSTAESTRN----NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP------ 74 (156)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEECCC----CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence 78999999999999999999999986 67899999999999999999999999999999999999999975
Q ss_pred CCCCCCCCeEEEEEEEEee
Q 008788 125 PSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~ 143 (553)
+..++..+....+
T Consensus 75 ------d~~~v~~vp~~~f 87 (156)
T PRK15095 75 ------SPDLIQYFSRRDF 87 (156)
T ss_pred ------ChHHEEEecHHHC
Confidence 4556666655555
No 26
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.3e-15 Score=152.81 Aligned_cols=117 Identities=29% Similarity=0.542 Sum_probs=108.9
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+...|+.||.+|+.|+|..|+..|.+||. .+|.+ ..+|.|+|+||++++++..|+.+|+.++++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk----r~P~D-----------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK----RDPED-----------ARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCch-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 377788999999999999999999999999 78887 789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
||++.|+|+|.|.|+..+.+|+.|++.|+.++++||++ .++...+.+|-..+
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997 46777777777654
No 27
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7e-15 Score=144.66 Aligned_cols=129 Identities=27% Similarity=0.414 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (553)
..-..+..+.+++.||.+|+.|+|..|-++|..||. ++|.+ .+..+.||.|+|.+..++|+..+|+.+|
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n-------~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN-------KKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc-------cchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 344566788999999999999999999999999999 88876 3445789999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 008788 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL 532 (553)
Q Consensus 471 ~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~ 532 (553)
+.|+.+|+...|||.+||.||..|++|++|+++|++|++++-+ .++++.|.+.+..+++.
T Consensus 311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKS 370 (486)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999876 35777776666655543
No 28
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.54 E-value=8.5e-14 Score=143.04 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=110.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..++..|+.+|..++|..|+..|++||+ ..|.+ ..+|+++|.||+++++|.+|+.++++|+.++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~-----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAID----LDPNN-----------AELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34578899999999999999999999999 77776 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL 532 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~ 532 (553)
|+++.+|+++|.+|+.+|+|++|+..|++|++++|++ ..+...+..|..+++..
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD-SRFTKLIKECDEKIAEE 120 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999997 56888899998888654
No 29
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.2e-14 Score=135.11 Aligned_cols=104 Identities=30% Similarity=0.442 Sum_probs=94.7
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.|..+|+.||.+|+.++|..|+..|.++|+ ....+ .++.+.+|+|+|+|++-+++|..|+.+|.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk----~kc~D-------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK----KKCAD-------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh----hcCCC-------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999 55555 3455789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
+|.+.||+||-|+|++.|..+.+|..+++..+.++
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999888888887766654
No 30
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.1e-13 Score=121.05 Aligned_cols=71 Identities=28% Similarity=0.468 Sum_probs=66.8
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~ 119 (553)
+++||.|.++|++++.||++||+|.. ...|+.|.+|.+++++||+++|.+|.+|++.+|.|||+.|||.+.
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDE----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccc----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 68999999999999999999999975 477999999999999999999999999999999999999999763
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.51 E-value=3.1e-13 Score=149.84 Aligned_cols=135 Identities=27% Similarity=0.393 Sum_probs=116.7
Q ss_pred CCCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHh
Q 008788 364 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV 443 (553)
Q Consensus 364 ~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~ 443 (553)
..|+...+....++..++. .+.+.++.+++...+..+++.|+.+|+.|+|.+|+..|++||. +.|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~----~~p~--------- 159 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE----CKPD--------- 159 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc---------
Confidence 3455555556655555444 4456789999999999999999999999999999999999998 5553
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
..+|+|+|.||+++++|++|+.+|++||+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 247999999999999999999999999999999999999999999999999999999999988877654
No 32
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.51 E-value=2.2e-13 Score=125.08 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=72.7
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
+++++.|+|+|++++.||++|++|+. ..|+.|.+|.++++|+|+++|.+|++|++++|+|||+.|||.+
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~------ 71 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY------ 71 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence 67899999999999999999999974 6799999999999999999999999999999999999999976
Q ss_pred CCCCCCCCeEEEEEEEEee
Q 008788 125 PSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~ 143 (553)
+..++..|....|
T Consensus 72 ------d~~lV~~vpr~~F 84 (196)
T PRK10737 72 ------DENLVQRVPKDVF 84 (196)
T ss_pred ------ChHHEEEecHHHC
Confidence 4556666654444
No 33
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=2.3e-12 Score=114.88 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=98.8
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|..+++.|+|.+|+..|++++. .+|.+ ..+++++|.++.++|+|.+|+..++++++++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM----AQPWS-----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 55679999999999999999999999 78877 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+.+++++|.++..+|++++|+..|++|++++|++ ..........
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-~~~~~~~~~~ 135 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-ASWSEIRQNA 135 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence 9999999999999999999999999999999997 4454444333
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.3e-13 Score=135.90 Aligned_cols=113 Identities=27% Similarity=0.462 Sum_probs=104.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..++++||..|..|+|+.|+..|..||. ++|.+ +.+|.|++.||.++++|.+|+.+..+..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~----l~p~n-----------hvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIM----LSPTN-----------HVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHc----cCCCc-----------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999 78877 7899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
|.++|+|+|+|.+++.||+|++|+..|...|+.+|+|+ ....-|....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~-~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK-QLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH-HHHHhHHHhh
Confidence 99999999999999999999999999999999999984 3555555544
No 35
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.42 E-value=2.9e-13 Score=121.23 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=67.6
Q ss_pred CCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCC
Q 008788 168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM 239 (553)
Q Consensus 168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~ 239 (553)
.++.|+.|++||++++.||++|+||.. ++|+.|.+|.+++++||+++|.+|++|+++.|.|||+.+||..++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~ 76 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP 76 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 578899999999999999999999974 799999999999999999999999999999999999999997754
No 36
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.3e-13 Score=121.15 Aligned_cols=118 Identities=25% Similarity=0.360 Sum_probs=105.6
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+++.||.+|...+|..|+.+|.+||. ++|.. +..|.|+|+||+++++|+.+..+|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~----~nP~~-----------~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC----INPTV-----------ASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHh----cCCCc-----------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 3588899999999999999999999999999 78766 67899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD----KSSEPDATAALSKLKKQ 528 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~----P~~~~~~~~~l~~l~~~ 528 (553)
++|+.+|++|-+|.+++....|++|+..|++|..+- +.+..++.++|...+.+
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 999999999999999999999999999999997762 22334688888777654
No 37
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.38 E-value=2.8e-12 Score=117.88 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=68.6
Q ss_pred CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCC
Q 008788 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240 (553)
Q Consensus 168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~ 240 (553)
+++.++.|+++|++++.+|++|++|...+|+.|.+|.++++|+|+++|.+|++|++.+|.|||+.|||.+.+.
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~ 74 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN 74 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 3577899999999999999999999888999999999999999999999999999999999999999987653
No 38
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.9e-12 Score=115.02 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=69.3
Q ss_pred CCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCC
Q 008788 168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPV 241 (553)
Q Consensus 168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ 241 (553)
.++.||.|++||++++.||++|++|.. ..|+.|.+|.+++++||+++|.+|.+|++.++.|||+.|||.+++..
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~l 76 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDL 76 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHH
Confidence 467899999999999999999999987 89999999999999999999999999999999999999999886643
No 39
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.30 E-value=3e-12 Score=129.48 Aligned_cols=122 Identities=30% Similarity=0.452 Sum_probs=113.0
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.|+.+++++|.+|+.+.|+.|+..|.+||+ ++|.. +.++.|+|++++|.+.|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnc-----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIE----LDPNC-----------AIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcc-----------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 467889999999999999999999999999 67755 668899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKV 534 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (553)
+|...|+|+|+|.+++.+++|.+|+.+|+...++.|+. ..+.+.+..|.+...+++.
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec~~~vs~~~f 124 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND-PDATRKIDECNKIVSEEKF 124 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc-HHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999985 6799999999988876543
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=7.7e-11 Score=103.81 Aligned_cols=114 Identities=18% Similarity=0.346 Sum_probs=101.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+......|..+++.|++.+|+..|++++. ..|.+ ..++.++|.|+++++++.+|+..+++++..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYN-----------SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45577899999999999999999999988 66766 5789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
|.++..++.+|.++..+|++++|+..|+++++++|++. ......+.+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~ 130 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP-EYSELKERAEA 130 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hHHHHHHHHHH
Confidence 99999999999999999999999999999999999873 34444444443
No 41
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.27 E-value=1.1e-10 Score=102.98 Aligned_cols=100 Identities=9% Similarity=0.096 Sum_probs=94.2
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
..+.+...|..++..|++++|...|+-.+. .+|.+ ...|+|||.|+..+++|.+|+..|.+|+.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~-----------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWS-----------FDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456788999999999999999999998888 67776 679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
+|+++.++++.|.|++.+|+.+.|++.|+.|+.+-
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999886
No 42
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=6.4e-11 Score=91.34 Aligned_cols=66 Identities=32% Similarity=0.605 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P 512 (553)
+.+|.++|.+++.+++|++|+.+++++++++|+++.+|+++|.|+..+| ++++|+++|++|++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5689999999999999999999999999999999999999999999999 79999999999999998
No 43
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=9.1e-10 Score=103.60 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=95.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHH-HHcCC--HHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL-LKLGE--CRKSIEACNKVL 474 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~-~kl~~--~~~A~~~~~~al 474 (553)
++.+...|..+...|+++.|+..|++|++ +.|.+ ..+++++|.|+ ...++ +.+|+..+++++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~-----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGEN-----------AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 55678899999999999999999999999 78877 67899999985 67787 599999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+.+|+++.+++.+|.+++.+|+|++|+..++++++++|.+.
T Consensus 138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999864
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.1e-09 Score=110.10 Aligned_cols=104 Identities=22% Similarity=0.240 Sum_probs=98.2
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+.++|..+...|++.+|+..|++|++ .+|.+ ..+|+++|.++..+++|++|+..+++++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 466688999999999999999999999999 78876 679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+|++..+|+++|.++...|++++|+++|+++++++|++.
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999873
No 45
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=7.4e-09 Score=95.38 Aligned_cols=116 Identities=21% Similarity=0.318 Sum_probs=97.7
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
....+..+...|..++..|++++|+..|++|++ ..+...+ ...++.++|.++.++|+|++|+.++.++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALK----LEEDPND--------RSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----Hhhccch--------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445677889999999999999999999999998 3332211 1468899999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHH
Q 008788 474 LDANPAHVKGLYRRGMAYMALGE--------------FEEAQRDFEMMMKVDKSSEPDATAA 521 (553)
Q Consensus 474 l~~dp~n~ka~~r~g~a~~~lg~--------------~~~A~~~l~~al~l~P~~~~~~~~~ 521 (553)
+.++|.+..+++.+|.++..+++ +++|++.+++++.++|++-.++...
T Consensus 99 l~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 160 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160 (172)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHH
Confidence 99999999999999999999988 6888899999999999864333333
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.99 E-value=6.5e-09 Score=115.43 Aligned_cols=103 Identities=25% Similarity=0.324 Sum_probs=73.1
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|++++|+..|++|+. .+|.. ..+|+++|.+++.++++++|+.++++++++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345567788888889999999999999988 56654 345666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+|+++.+|+.+|.++..+|+|++|+.+|+++++++|++
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 66666666666666666666666666666666666664
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.98 E-value=7.9e-09 Score=88.34 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=92.0
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
+.+...|..+++.|+|.+|+..|.+++. ..|.+. ....+++++|.++++.++|.+|+..+.+++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 4566889999999999999999999998 444331 1145788999999999999999999999999998
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 479 AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 479 ~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
++ ..+++.+|.++..++++++|+..|+++++..|++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 75 67899999999999999999999999999999973
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.2e-09 Score=106.38 Aligned_cols=117 Identities=25% Similarity=0.312 Sum_probs=105.1
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..|..+.-+|..+|-.|++-.|...++++|+ ++|.+ ..+|..+|..|+..++..+-..++++|..
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~-----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ 388 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAF-----------NSLYIKRAAAYADENQSEKMWKDFNKAED 388 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHh----cCccc-----------chHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 4588899999999999999999999999999 67765 56799999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR 530 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (553)
+||.|+..||.||+.++-|++|++|+++|++|++|+|+| +...++.|-...+
T Consensus 389 ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~---~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 389 LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN---AYAYIQLCCALYR 440 (606)
T ss_pred cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 4555555555444
No 49
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.98 E-value=4.5e-10 Score=108.97 Aligned_cols=119 Identities=28% Similarity=0.473 Sum_probs=107.6
Q ss_pred ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (553)
Q Consensus 390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (553)
..++.++++...+..+...+..|.++.|+..|.+||. ++|.. ..+|.+++.++++++++..|+++
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~----lnp~~-----------a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIE----LNPPL-----------AILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccc----cCCch-----------hhhcccccceeeeccCCchhhhh
Confidence 4678889999999999999999999999999999999 78876 67899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 470 ~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
|+.|++++|+.++.|-.|+.|+..||+|++|..+|..|++++-+- ++...|+.+
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE--~~~a~lKeV 224 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE--ANSATLKEV 224 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH--HHHHHHHHh
Confidence 999999999999999999999999999999999999999998762 344444443
No 50
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.96 E-value=5.2e-09 Score=108.23 Aligned_cols=113 Identities=23% Similarity=0.308 Sum_probs=96.6
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.|..+-+.|..++.+|..+.|+..|++||+ +.|.. ..+|+|+|.++-..|+..+|.+++++||.+
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~----~~P~F-----------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALE----LQPNF-----------PDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHh----cCCCc-----------hHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 466777888889999999999999999999 77765 568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
.|+.+.+++++|.++.+.+.+++|...|++|++..|... .+.+.|..+
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a-aa~nNLa~i 397 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA-AAHNNLASI 397 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh-hhhhhHHHH
Confidence 999999999999999999999999999999999999853 344444433
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=2.3e-09 Score=103.73 Aligned_cols=132 Identities=21% Similarity=0.350 Sum_probs=109.5
Q ss_pred CCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (553)
Q Consensus 388 ~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (553)
..++-.+++.+.+..+.+......++|.+++..+++.++ ..|.. ...+...+--++.|+..-+++-+||
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk----~ep~~-------~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK----NEPEE-------TMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCCcc-------cceeeeeeheeeecccccCCHHHHH
Confidence 345666777788888888899999999999999999888 45432 1112334556789999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 008788 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRK 531 (553)
Q Consensus 468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~ 531 (553)
+.|+++|+++|+++.+|..||.||+.-.+|+.|+.+|++|++++++|. .++.-+.+.++..++
T Consensus 328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~-~~reGle~Akrlkkq 390 (504)
T KOG0624|consen 328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT-RAREGLERAKRLKKQ 390 (504)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 588777776665443
No 52
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.94 E-value=2.5e-09 Score=85.90 Aligned_cols=83 Identities=29% Similarity=0.514 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
.++|+.|+..|+++++ ..|.+. ....++++|.||+++++|++|+..+++ +..++.+...++.+|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~----~~~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE----LDPTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHH----HHCGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH----HCCCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 5899999999999999 344221 145788899999999999999999999 99999999999999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 008788 491 YMALGEFEEAQRDFEMM 507 (553)
Q Consensus 491 ~~~lg~~~~A~~~l~~a 507 (553)
+..+|+|++|+..|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 53
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.91 E-value=3.3e-08 Score=90.69 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=94.2
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...+..+...|..++..++|++|+..|++|+. +.+... ....+++|+|.++.+++++++|+..|.+|+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----l~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR----LEIDPY--------DRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----ccccch--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34678888999999999999999999999998 333221 124589999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCChHHHHHHH
Q 008788 475 DANPAHVKGLYRRGMAYM-------ALGEFE-------EAQRDFEMMMKVDKSSEPDATAAL 522 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~-------~lg~~~-------~A~~~l~~al~l~P~~~~~~~~~l 522 (553)
.++|.+..+++.+|.++. .+|+++ +|+..|++++.++|.+...+...+
T Consensus 100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~ 161 (168)
T CHL00033 100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL 161 (168)
T ss_pred HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 999999999999999999 777876 556666677888998654444333
No 54
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.91 E-value=4.8e-09 Score=108.45 Aligned_cols=109 Identities=23% Similarity=0.362 Sum_probs=59.6
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
..+.+.||.+...|.++.|.+.|.+|++++ | ..+.+++|||..|-..|++++|+.+++.||+++|
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~----p-----------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVF----P-----------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhC----h-----------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 334444444444455555555555554421 1 1244556666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
..+.||.++|..|..+|+.+.|+.+|.+|+.++|.. +++...|.
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-AeAhsNLa 463 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-AEAHSNLA 463 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-HHHHhhHH
Confidence 666666666666666666666666666666666553 33443333
No 55
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.91 E-value=4.8e-09 Score=79.74 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3678999999999999999999999999999999999999999999999999999999999986
No 56
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.91 E-value=1.1e-08 Score=99.11 Aligned_cols=105 Identities=22% Similarity=0.437 Sum_probs=98.8
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+++..+.|+.++.+|+|..|+..|..|++ .+|.+ -.+++.+|.+|+.||+-+.|+.+++++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~-----------Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNN-----------YQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchh-----------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 4577888999999999999999999999999 77766 56889999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+.|+..-|...||.+++..|+++.|.++|+.+|+-+|++.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999764
No 57
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.89 E-value=1.3e-08 Score=81.65 Aligned_cols=98 Identities=33% Similarity=0.587 Sum_probs=87.9
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|..++..|++.+|+..+.++++ ..|.+ ..++.++|.|+...+++++|+..+++++...|.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE----LDPDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45678888899999999999999998 55544 3578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
..+++.+|.++...++++.|...+.++++++|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999998874
No 58
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.89 E-value=6.7e-08 Score=81.15 Aligned_cols=115 Identities=21% Similarity=0.321 Sum_probs=98.3
Q ss_pred hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
.-++....+-.+|..+-..|+.+.|++.|.+||. +-|.. .++|+|+|+++.-.++.++|+++.++
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~----l~P~r-----------aSayNNRAQa~RLq~~~e~ALdDLn~ 102 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALC----LAPER-----------ASAYNNRAQALRLQGDDEEALDDLNK 102 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----hcccc-----------hHhhccHHHHHHHcCChHHHHHHHHH
Confidence 4466777788899999999999999999999999 55554 78999999999999999999999999
Q ss_pred HHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 473 VLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 473 al~~dp~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
|+++--.. ..+|..||..|..+|+-+.|+.+|..|.+|-... ++.+|-.+
T Consensus 103 AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F---Ar~QLV~l 156 (175)
T KOG4555|consen 103 ALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF---AREQLVEL 156 (175)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH---HHHHHHhc
Confidence 99996543 4579999999999999999999999999998653 55555444
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=3.8e-09 Score=110.61 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=67.2
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh-------------hHH-HHHhhh---------hhHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-------------EEG-KVFVGK---------RNLLHLNVA 454 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~-------------ee~-~~~~~~---------~~~~~~nla 454 (553)
-+.+...||.+--+++++.|+++|++|+. ++|... +|. +..... --.+|+-+|
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 45688999999999999999999999999 666441 010 000000 012445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
++|+|+++++.|.-++.+|++++|.|.-.+...|..+.++|+.++|+..|++|+.+||.|
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 555555555555555555555555555555555555555555555555555555555554
No 60
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.89 E-value=3.3e-08 Score=113.29 Aligned_cols=110 Identities=10% Similarity=0.082 Sum_probs=91.7
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+...|..+.+.|++++|+..|++|+. ..|.+ ..+++|+|.++..+|++++|+..+.+|++++|+
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~-----------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALE----LEPNN-----------SNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 445667777777888888888888777 66766 568899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
++.+++.+|.++..+|++++|+..|++|++++|++ ..+......+
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~ 720 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQ 720 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHH
Confidence 99999999999999999999999999999999986 3455444333
No 61
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.84 E-value=6.5e-09 Score=80.00 Aligned_cols=66 Identities=29% Similarity=0.499 Sum_probs=61.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~ 476 (553)
+..+...|..++..++|++|+..|++|++ .+|.+ ..+++|+|.||.+++ ++.+|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67788999999999999999999999999 67765 679999999999999 799999999999999
Q ss_pred CC
Q 008788 477 NP 478 (553)
Q Consensus 477 dp 478 (553)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 98
No 62
>PRK15331 chaperone protein SicA; Provisional
Probab=98.81 E-value=7.4e-08 Score=85.45 Aligned_cols=102 Identities=9% Similarity=0.149 Sum_probs=91.6
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
..+.....|-.+|..|+|++|...|+-... .++.+ ...++.||.|+..+++|.+|+..+..|..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456778899999999999999999986555 56666 567899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+++++...|+.|.|++.+|+.+.|+..|..|+. .|.+
T Consensus 101 ~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 101 LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 999999999999999999999999999999998 4553
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=4.8e-08 Score=87.08 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008788 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (553)
Q Consensus 418 ~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~ 497 (553)
...|++|++ ++|. .+.++|.++..+|+|++|+.+|.+++.++|.+..+|+.+|.++..+|++
T Consensus 13 ~~~~~~al~----~~p~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLS----VDPE--------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHH----cCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 345778887 5542 2567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 498 ~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
++|+..|++|+.++|++ ..+...+..+....
T Consensus 75 ~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~ 105 (144)
T PRK15359 75 TTAINFYGHALMLDASH-PEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHc
Confidence 99999999999999987 45666565554443
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=1.7e-07 Score=90.91 Aligned_cols=107 Identities=21% Similarity=0.318 Sum_probs=94.7
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..+++.|+|++|+..|++++. ..|.+.. ...+++++|.+++++++|++|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~~--------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSPY--------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchh--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 366778999999999999999999999998 5665421 1357899999999999999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCh
Q 008788 477 NPAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 477 dp~n~k---a~~r~g~a~~~l--------g~~~~A~~~l~~al~l~P~~~ 515 (553)
+|++.. ++|.+|.++..+ +++++|++.|+++++.+|++.
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 998887 799999999987 889999999999999999974
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=1.4e-07 Score=88.68 Aligned_cols=119 Identities=11% Similarity=0.079 Sum_probs=96.5
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~ 489 (553)
..++.++++..|+++++ .+|.+ ...|.++|.+|+.++++++|+..+.+|++++|+++.+++.+|.
T Consensus 51 ~~~~~~~~i~~l~~~L~----~~P~~-----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46788999999999999 78887 6799999999999999999999999999999999999999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788 490 AY-MALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT 545 (553)
Q Consensus 490 a~-~~lg~--~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (553)
++ ...|+ +++|++.|+++++++|++ ..+...+..........+ +-...|.++..
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~-~Ai~~~~~aL~ 172 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYA-QAIELWQKVLD 172 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHH-HHHHHHHHHHh
Confidence 86 67787 599999999999999997 456666655544433322 23334444443
No 66
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.5e-08 Score=97.39 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=106.6
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ 481 (553)
.-.||-+--+++.+.|+..|++||+ ++|.. ..+|.-+|.-|+.|++-+.|+..+++|++++|.+.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALk----LNp~~-----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy 398 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALK----LNPKY-----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY 398 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHh----cCcch-----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH
Confidence 3568888888999999999999999 78876 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGC 543 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~m 543 (553)
+|||-+|++|..++.+.-|+-+|++|+.+-|++ +.++..|..|-.++..... ..+.|++.
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~e-AiKCykra 458 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPND-SRLWVALGECYEKLNRLEE-AIKCYKRA 458 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHH-HHHHHHHH
Confidence 999999999999999999999999999999986 5588888888766543322 23455543
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.7e-08 Score=99.53 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=99.4
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+.+.|...|..+.|.+|...+++++..+....+... .-.+.++|+|..+.|++.|.+|+..+++||.+.|.+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 568899999999999999999999976555443221 125789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+.+|--.|.+|..+|+++.|++.|.+||-++|+|. -+...|+.+
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~-~~~~lL~~a 532 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI-FISELLKLA 532 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH-HHHHHHHHH
Confidence 99999999999999999999999999999999973 455555543
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.9e-08 Score=103.84 Aligned_cols=98 Identities=27% Similarity=0.399 Sum_probs=91.7
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
.-..|..++-.++|++|+.+|+.||. .+|.+ ..+|+.||+.+..-.+..+|+..|++||++.|..
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd-----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQ----VKPND-----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHh----cCCch-----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 33567888889999999999999999 88988 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
+.+.|++|.+++.+|.|.+|..+|-.||.+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999775
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=98.73 E-value=1.2e-07 Score=103.66 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=85.5
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~ 489 (553)
..+++.+|+..+++|++ ++|.+ ..++.++|.++..++++++|+..+++|++++|+++.+|+.+|.
T Consensus 316 ~~~~~~~A~~~~~~Al~----ldP~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 316 KQNAMIKAKEHAIKATE----LDHNN-----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred cchHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55679999999999999 78877 5688999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 490 AYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 490 a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
++..+|++++|+..|+++++++|.+.
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999999999863
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=98.73 E-value=1.5e-07 Score=102.90 Aligned_cols=110 Identities=9% Similarity=0.087 Sum_probs=94.2
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+...|..+...|++++|+..|++|++ ++|.+ ..+++++|.++..+|++++|+.+++++++++|.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANL----LSPIS-----------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 455678888899999999999999999 78877 568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-KSSEPDATAALSKL 525 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~-P~~~~~~~~~l~~l 525 (553)
++.+++.++.+++.+|++++|++.++++++.. |++ +.+...+..+
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~ 450 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN-PILLSMQVMF 450 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC-HHHHHHHHHH
Confidence 99888888888999999999999999999886 544 4444444433
No 71
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=1.2e-07 Score=104.88 Aligned_cols=112 Identities=7% Similarity=0.061 Sum_probs=98.3
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.++.++..|....+.|++++|...|..++. ..|++ ..++.|+|.++.+++++++|+..|+++|..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~-----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDS-----------SEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 366788889999999999999999999999 78877 778999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~ 524 (553)
+|+|+.+++.+|.++.++|+|++|++.|++++.-+|++ ..++-.+..
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~~~a~ 196 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYVGWAQ 196 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHHHHHH
Confidence 99999999999999999999999999999999988875 334433333
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.72 E-value=4.1e-07 Score=86.68 Aligned_cols=112 Identities=19% Similarity=0.293 Sum_probs=86.1
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|..++..|++++|+..|.+++.. ... ......+.++|.|+..++++.+|+..+.+++..+|.+
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIED----PLY---------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc----ccc---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 344566666667777777777776651 110 0124578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
..+++.+|.++...|++++|+..+++++++.|.+ ......+..+.
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 213 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIA 213 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 9999999999999999999999999999998775 33433333333
No 73
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.72 E-value=3.3e-08 Score=103.99 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
++.||.|.++|+++. +|+.|+++. ..++.|.+|.+.+++||+.+|.||++|++++|.+++...|+.....
T Consensus 147 ~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~--- 216 (408)
T TIGR00115 147 AEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA--- 216 (408)
T ss_pred cCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC---
Confidence 689999999999985 899888653 4689999999999999999999999999999999988889876543
Q ss_pred CCCCCCCCeEEEEEEEEeeeccccccCCCCe
Q 008788 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGV 155 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~ 155 (553)
|.++.|.|+|.++.....+.-|..+
T Consensus 217 ------gk~~~f~v~i~~I~~~~~peldDef 241 (408)
T TIGR00115 217 ------GKEATFKVTVKEVKEKELPELDDEF 241 (408)
T ss_pred ------CCeEEEEEEEEEeccCCCCCCCHHH
Confidence 8999999999999765443333333
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.71 E-value=3.1e-07 Score=85.04 Aligned_cols=105 Identities=25% Similarity=0.336 Sum_probs=71.6
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+....+.|-.++..|++..|....++||+ .+|.+ ..+|.-+|..|.++|+.+.|-+.|++||.
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~-----------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls 97 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSY-----------YLAHLVRAHYYQKLGENDLADESYRKALS 97 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence 4566777889999999999999999999998 66665 34455555555555555555555555555
Q ss_pred hCCCC------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 476 ANPAH------------------------------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 476 ~dp~n------------------------------------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
++|+| ...|-+.|.|.++.|+++.|.++|+++|+++|++.
T Consensus 98 l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 98 LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 55554 44555666666666666666677777777777653
No 75
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.2e-08 Score=103.13 Aligned_cols=95 Identities=22% Similarity=0.336 Sum_probs=79.5
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
++.||.|+|+|.|+ .||..|. |+....+.+.+|+|++||||+.+|.||++|++..|.|.....|....+.
T Consensus 158 a~~gD~v~IDf~g~-iDg~~fe------gg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La--- 227 (441)
T COG0544 158 AENGDRVTIDFEGS-VDGEEFE------GGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA--- 227 (441)
T ss_pred cccCCEEEEEEEEE-EcCeecc------CccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC---
Confidence 68999999999997 5999888 4456789999999999999999999999999999877766777766654
Q ss_pred CCCCCCCCeEEEEEEEEeeeccccccCCCCe
Q 008788 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGV 155 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~ 155 (553)
|.+..|.|+|..+.....+.-|..+
T Consensus 228 ------GK~a~F~V~vkeVk~~elpEldDEf 252 (441)
T COG0544 228 ------GKEATFKVKVKEVKKRELPELDDEF 252 (441)
T ss_pred ------CCceEEEEEEEEEeecCCCCCCHHH
Confidence 8999999999999876554443333
No 76
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.68 E-value=1.1e-07 Score=73.93 Aligned_cols=66 Identities=24% Similarity=0.443 Sum_probs=60.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~ 520 (553)
...|+..++|.+|+..+++++.++|+++.+++.+|.++..+|+|++|+++|++++++.|++ .++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999986 33443
No 77
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=5.1e-07 Score=91.06 Aligned_cols=111 Identities=17% Similarity=0.110 Sum_probs=90.8
Q ss_pred HHHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH--HHHHHHHHHHHh
Q 008788 399 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--RKSIEACNKVLD 475 (553)
Q Consensus 399 ~~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~--~~A~~~~~~al~ 475 (553)
..+..+|..+...+ ++.+|+..+.+++. .+|.+ ..++++++.++.+++.. .+++.+++++|+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npkn-----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKN-----------YQIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcc-----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 34445666666666 57888888888887 66666 56899999999888874 788999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+||.|..||+.|+.++..+++|++|++++.+++++||+|.. ++.....+
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s-AW~~R~~v 185 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS-AWNQRYFV 185 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-HHHHHHHH
Confidence 99999999999999999999999999999999999999854 55544443
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.66 E-value=6.8e-07 Score=85.12 Aligned_cols=113 Identities=17% Similarity=0.318 Sum_probs=59.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH-----------------HH------HHhhhhhHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------GK------VFVGKRNLLHLNVA 454 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee-----------------~~------~~~~~~~~~~~nla 454 (553)
+..+...|..++..|++++|+..|+++++ ..|.+..- .+ ........++.+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE----HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 44555666666777777777777777665 33332100 00 00000123455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 455 ACLLKLGECRKSIEACNKVLDAN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~d--p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.++..++++++|+..+.+++... +....+++.+|.++..+|++++|...|.++++.+|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 55555555555555555555432 3344455555666666666666666666666665554
No 79
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.66 E-value=4.1e-07 Score=104.41 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=83.6
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
.|++++|+..|++|++ ..|. ..++.|+|.++.++|++++|+..+.++++++|+++.+++.+|.+
T Consensus 589 ~Gr~~eAl~~~~~AL~----l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 589 PGQPELALNDLTRSLN----IAPS------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred CCCHHHHHHHHHHHHH----hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3666666666666665 3441 35789999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 491 ~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
+..+|++++|++.|++|++++|++ ..+...+..+...
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~ 689 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQR 689 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 999999999999999999999987 4566555555444
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.66 E-value=4.6e-07 Score=91.05 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
..+.+.++..+.++|. ..+.+++ .....|+++|.++..+|++.+|+..++++++++|+++.+|+.+|.+
T Consensus 39 ~~~~e~~i~~~~~~l~----~~~~~~~-------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 107 (296)
T PRK11189 39 TLQQEVILARLNQILA----SRDLTDE-------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY 107 (296)
T ss_pred chHHHHHHHHHHHHHc----cccCCcH-------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3567889999999886 2232211 2356899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 491 YMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 491 ~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+..+|++++|++.|+++++++|++.
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999974
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=4.3e-07 Score=100.44 Aligned_cols=117 Identities=12% Similarity=0.098 Sum_probs=101.5
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+......+..+++.+++++|+..+++++. ..|++ ...++++|.|+.++|+|++|+..|++++..
T Consensus 119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-----------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 119 SSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-----------AREILLEAKSWDEIGQSEQADACFERLSRQ 183 (694)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 466677999999999999999999999999 78877 678999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
+|++++++..+|.++..+|+.++|...|++|+.+...-.....+.+.++.+.
T Consensus 184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (694)
T PRK15179 184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNAD 235 (694)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998654322233444444443
No 82
>PRK01490 tig trigger factor; Provisional
Probab=98.64 E-value=7.8e-08 Score=101.98 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=77.9
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
++.||.|+++|+++. ||+.|+++. ..++.|.+|.+.+++||+.+|.||++|+++.|.++....|+.....
T Consensus 158 ~~~gD~V~vd~~~~~-~g~~~~~~~------~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la--- 227 (435)
T PRK01490 158 AENGDRVTIDFVGSI-DGEEFEGGK------AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA--- 227 (435)
T ss_pred CCCCCEEEEEEEEEE-CCEECcCCC------CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC---
Confidence 689999999999996 898887553 4689999999999999999999999999999999988888766543
Q ss_pred CCCCCCCCeEEEEEEEEeeecccccc
Q 008788 125 PSTFPKDEELHFEIEMIDFAKAKIIA 150 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~~~~~~~~ 150 (553)
|.++.|.|+|.++.....+.
T Consensus 228 ------gk~~~f~v~v~~V~~~~~pe 247 (435)
T PRK01490 228 ------GKEATFKVTVKEVKEKELPE 247 (435)
T ss_pred ------CCeEEEEEEEEEeccCCCCC
Confidence 89999999999997654433
No 83
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.64 E-value=3.9e-07 Score=101.62 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=74.9
Q ss_pred hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCC
Q 008788 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK----SIEACNKVLDANPA 479 (553)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~----A~~~~~~al~~dp~ 479 (553)
.+..++..|++++|+..|++++. ..|.+ ..+++++|.++..+|++.+ |+..|+++++++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~----~~p~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA----RGLDG-----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 35566778888888888888887 55554 4566777777777777764 67777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~ 327 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARA 327 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 77777777777777777777777777777777775 3344444433
No 84
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=3.7e-07 Score=80.16 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=80.6
Q ss_pred HHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 008788 420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE 499 (553)
Q Consensus 420 ~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~ 499 (553)
.|++++. .+|.+ .....++|.++++.+++.+|+..+.+++..+|.+..+++++|.++..++++++
T Consensus 5 ~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLG----LDSEQ-----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHc----CChhh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4677777 66655 45788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 500 AQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 500 A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
|+..|+++++++|++ ......+..+....
T Consensus 70 A~~~~~~~~~~~p~~-~~~~~~la~~~~~~ 98 (135)
T TIGR02552 70 AIDAYALAAALDPDD-PRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHhcCCCC-hHHHHHHHHHHHHc
Confidence 999999999999986 44655555554444
No 85
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.62 E-value=8.2e-07 Score=86.97 Aligned_cols=104 Identities=10% Similarity=0.141 Sum_probs=88.6
Q ss_pred HHHhhhccc-cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 400 KIRVTGNRL-FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 400 ~~k~~G~~~-~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
.....+..+ ++.|+|.+|+..|++.++ ..|.+. ....+++-+|.+|+..++|++|+..+.+++...|
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~--------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVK----KYPDST--------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 334555555 567999999999999999 566542 1245789999999999999999999999999988
Q ss_pred C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 479 A---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 479 ~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+ .+.|+|.+|.++..+|+++.|+..|+++++..|++.
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 7 477899999999999999999999999999999974
No 86
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.61 E-value=1.2e-07 Score=72.60 Aligned_cols=67 Identities=28% Similarity=0.489 Sum_probs=59.6
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (553)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~ 524 (553)
+++.|+|.+|+..+++++..+|+|..+++.+|.|+...|++++|+..+++++..+|++ +.++..+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999985 556655543
No 87
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1e-06 Score=89.01 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=106.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+--.|.++...++-..|+..|++|++ ++|.| ..+|+-+|++|--|+..-=|+-++++|+.+.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~D-----------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRD-----------YRAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchh-----------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 44566789999999999999999999999 88877 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL 544 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (553)
|++...|-.+|.||.++++.++|+.+|++|+.+.-.+ ..+...|.++-+++...++ ..+.|.+..
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~e-Aa~~yek~v 493 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNE-AAQYYEKYV 493 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999987654 3455566666666654333 334444443
No 88
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.59 E-value=1.8e-06 Score=83.86 Aligned_cols=124 Identities=25% Similarity=0.335 Sum_probs=99.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|+|.+|+..|++.+. ..|.... ...+.+++|.+|+++++|.+|+..+++.++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~~--------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGPY--------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44566788899999999999999999988 6665521 24567899999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHH
Q 008788 478 PAHV---KGLYRRGMAYMALGE------------------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRRKLK 533 (553)
Q Consensus 478 p~n~---ka~~r~g~a~~~lg~------------------~~~A~~~l~~al~l~P~~~--~~~~~~l~~l~~~~~~~~ 533 (553)
|+++ -|+|.+|.++..++. ...|+..|++.++.-|++. .+++..+..|+.++.+.+
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 8775 479999999876651 2578899999999999864 456666777777766544
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=9.6e-07 Score=83.49 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=100.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+...|..+++.|+|.+|+..+++|.. ..|.+ ..+|+-+|.||.++|+++.|...+.+++++.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d-----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~ 164 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTD-----------WEAWNLLGAALDQLGRFDEARRAYRQALELA 164 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCC-----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence 34455699999999999999999999999 78877 5789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
|+++.++-++|..+.-.|+++.|...+..+...-+.+ ..+...|..+..
T Consensus 165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~ 213 (257)
T COG5010 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVG 213 (257)
T ss_pred cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHh
Confidence 9999999999999999999999999999998777755 346665655543
No 90
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=2.2e-07 Score=94.82 Aligned_cols=109 Identities=24% Similarity=0.283 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc---CCHHHHH
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRKSI 467 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl---~~~~~A~ 467 (553)
..+..+.++..+++||..|..+....|+..|.+|+. ..|.. +.+|.|+|.+++|. ++-..|+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q----~~~~~-----------~~~l~nraa~lmkRkW~~d~~~Al 431 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ----YVPDA-----------IYLLENRAAALMKRKWRGDSYLAL 431 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh----hccch-----------hHHHHhHHHHHHhhhccccHHHHH
Confidence 456778899999999999999999999999999998 34433 67999999999986 4788999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+|..|+++||...||+|+++.|+..++++.+|+.+...+....|.+
T Consensus 432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999999999999999999999988887778864
No 91
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.56 E-value=9.6e-07 Score=98.45 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=84.2
Q ss_pred HHHHhhhccccccCCHHH----HHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 399 EKIRVTGNRLFKEGKFEL----AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~----A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
..+...|..++..|++.+ |+..|++|+. ..|.+ ..++.++|.++.++|++++|+..+++++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDN-----------VRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344567888888888885 7888888888 67765 5678888888888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+++|+++.+++.+|.++..+|++++|++.|++++..+|++
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8888888888888888888888888888888888888875
No 92
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=7.1e-07 Score=93.88 Aligned_cols=121 Identities=19% Similarity=0.317 Sum_probs=106.0
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.=.++.-.|..+.++++|+.|.-.|++|++ ++|.+ ..+..-++..+.++++.++|+..+++|+.+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~n-----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSN-----------SVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc----CCccc-----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 345677889999999999999999999999 88877 556677889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK 533 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (553)
||.|+-+.|.+|..++.+++|++|+..|+...++-|++ ..+..++.++-+++....
T Consensus 553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTD 608 (638)
T ss_pred CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccch
Confidence 99999999999999999999999999999999999996 557777777766665443
No 93
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=3e-07 Score=94.08 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka---~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
...|+|+|.+|.++++|++|+..|++||+++|++..+ ||++|.||..+|++++|+++|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999865 999999999999999999999999998
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.54 E-value=1.4e-06 Score=91.04 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
.++.++|.++++.+++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++.+|.+.
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 35677888888888888888888888888888888888888888888888888888888888888753
No 95
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.53 E-value=2.7e-06 Score=80.45 Aligned_cols=125 Identities=23% Similarity=0.348 Sum_probs=97.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|+|.+|+..|++.+. ..|.+. ....+.+.+|.++++.++|.+|+..+++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~----~~P~s~--------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLID----RYPNSP--------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH----H-TTST--------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCh--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 66788999999999999999999999988 445432 224678899999999999999999999999999
Q ss_pred CCCHH---HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHH
Q 008788 478 PAHVK---GLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRRKLKV 534 (553)
Q Consensus 478 p~n~k---a~~r~g~a~~~lg-----------~~~~A~~~l~~al~l~P~~~--~~~~~~l~~l~~~~~~~~~ 534 (553)
|++.. |+|.+|.+++.+. ...+|+..|+..++.-|++. .+++..+..|+.++.+.+=
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 98754 8999999987764 24589999999999999864 3566667777776665543
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.53 E-value=1.2e-06 Score=81.16 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=91.8
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.++.+.+.|-.++.+|+|++|...|.+|+. .|.-.+ ....+.|++.|.+++|++..|..++.++|++
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-----~P~Y~~--------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALA-----DPAYGE--------PSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHh-----CCCCCC--------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 356678899999999999999999999998 332211 2457899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
||+++-++..++.-++..|+|-.|+..+++...--+.+
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ 206 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999988876654
No 97
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.52 E-value=5.3e-07 Score=96.10 Aligned_cols=103 Identities=23% Similarity=0.328 Sum_probs=95.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE--ACNKVLD 475 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~--~~~~al~ 475 (553)
+..++..|..+-.+|++.+|...|..|+. ++|++ ..+...+|.|+++.|+..-|.. ....|++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~h-----------v~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDH-----------VPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCC-----------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 45578889999999999999999999999 89988 7788899999999998888888 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+||.|.+|||.+|.++..+|+.+.|.++|..|++|++++.
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999863
No 98
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.52 E-value=1.6e-06 Score=75.31 Aligned_cols=106 Identities=24% Similarity=0.413 Sum_probs=90.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+.+.|...++.|+|.+|++.++.... ..|... ....+.+.++-+|++.++|.+|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~----ryP~g~--------ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDT----RYPFGE--------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45567888889999999999998887655 555441 124578899999999999999999999999999
Q ss_pred CCCHH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCh
Q 008788 478 PAHVK---GLYRRGMAYMALGE---------------FEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 478 p~n~k---a~~r~g~a~~~lg~---------------~~~A~~~l~~al~l~P~~~ 515 (553)
|.+++ |+|++|.+++.+.. ...|..+|++.++.-|++.
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 98876 79999999999987 8899999999999999873
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.52 E-value=2.2e-07 Score=70.51 Aligned_cols=64 Identities=17% Similarity=0.400 Sum_probs=57.3
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ 481 (553)
..|..+++.|+|++|+..|+++++ ..|.+ ..+++.+|.|++.+|++++|+..++++++.+|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK----QDPDN-----------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC----CSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578889999999999999999999 67765 67999999999999999999999999999999885
No 100
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=2.1e-06 Score=86.60 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=97.4
Q ss_pred ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHH
Q 008788 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYR 486 (553)
Q Consensus 408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~dp~n~ka~~r 486 (553)
+...+++.+|+..+.++|. ++|.+ ..++++++.|+.+++ .+++++..+++++..+|.|..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~----lnP~~-----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIR----LNPGN-----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 4456789999999999999 78877 679999999999998 6899999999999999999999999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788 487 RGMAYMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT 545 (553)
Q Consensus 487 ~g~a~~~lg~~--~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (553)
|+.++..+++. ++++..+.++++++|.|. .++....-+-......+ ++-..+.++..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy-~AW~~R~w~l~~l~~~~-eeL~~~~~~I~ 170 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNY-HAWSHRQWVLRTLGGWE-DELEYCHQLLE 170 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Confidence 99999999974 788999999999999974 46655555544443322 23344444443
No 101
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=1.8e-07 Score=85.44 Aligned_cols=132 Identities=21% Similarity=0.235 Sum_probs=108.3
Q ss_pred CCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhh
Q 008788 365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG 444 (553)
Q Consensus 365 ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~ 444 (553)
+|-..++.-+|-+..+.+.-....++.+++ |.-+.++|+.+-..|-+..|...+.+|+. +.|.-
T Consensus 35 ~~~qp~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m--------- 98 (297)
T COG4785 35 VPLQPTLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALA----IRPDM--------- 98 (297)
T ss_pred ccCCccHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCc---------
Confidence 344444443433333333222234555554 77889999999999999999999999999 77765
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
..+++.+|..+...++|+.|.+.++.++++||.+--|+.+||.++.--|+|..|.+++.+-.+-||++
T Consensus 99 --~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 99 --PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred --HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999986
No 102
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.50 E-value=2e-06 Score=102.23 Aligned_cols=122 Identities=17% Similarity=0.276 Sum_probs=96.6
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH--H-HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--G-KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee--~-~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
+..+...|..+++.|++++|+..|++|++ ..|.+... + ..+......++.+++.++++.+++++|+..+.+++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44566788889999999999999999998 55544211 1 11111122344577889999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~ 524 (553)
+++|+++.+++.+|.++..+|++++|++.|+++++++|++. .+...+..
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~ 427 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLAN 427 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Confidence 99999999999999999999999999999999999999974 34444433
No 103
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=7.8e-07 Score=85.64 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
+-+-|.-+++.++|.+|+..|++||+++|.|+--|.+||.||.+||+|+.|+++++.|+++||+. ..++-.|-.+..
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~ 160 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999999999985 334433433333
No 104
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.50 E-value=1.8e-06 Score=98.28 Aligned_cols=111 Identities=11% Similarity=0.188 Sum_probs=98.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+.+.|++.+|+..|++++. ..|.+ ..++.+++.+++..+++.+|+..+.++++.+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33467788899999999999999999999 77876 4577899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
|+++. ++.+|.++...|++++|+..|+++++++|++. .+...+..+
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-~~~~~la~~ 159 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-QYPTEYVQA 159 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence 99999 99999999999999999999999999999974 454444433
No 105
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.9e-06 Score=85.88 Aligned_cols=113 Identities=23% Similarity=0.348 Sum_probs=97.1
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhh-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK-RNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~-~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
.+.+++-+|..++...+.+.|+..|+++|+ ++|+..+........ ....+-+.|.-.++.|.|..|-+.|..||.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 477889999999999999999999999999 788765443222211 234567888889999999999999999999
Q ss_pred hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 476 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 476 ~dp~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
+||+| ++.|++||.++.+||+..+|+.+.+.|++|||.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 99975 678999999999999999999999999999986
No 106
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.46 E-value=6.5e-07 Score=89.28 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=93.9
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+...|..+.+.|++++|+..|++|++ ..|.+ ..+..+++.+++.++++.++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~-----------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDD-----------PDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 44567888999999999999999999999 78887 4577788888999999999999998888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
|.++..+..+|.++..+|++++|+..|+++++.+|+| +.+...+..+-...
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQA 261 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT--
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccc-cccccccccccccc
Confidence 8899999999999999999999999999999999987 44655555544433
No 107
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.43 E-value=1.1e-06 Score=92.56 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=72.9
Q ss_pred CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCce
Q 008788 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247 (553)
Q Consensus 168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~ 247 (553)
.++.||.|+++|+++. +|..++++. +.++.|.+|.+.+++||+++|.||++|+++.|.++....|+... -++.+
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----~~gk~ 219 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----LAGKE 219 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc----CCCCe
Confidence 5788999999999965 888877653 57899999999999999999999999999999998766665432 25789
Q ss_pred EEEEEEEeeeee
Q 008788 248 VHFEVELVHLIQ 259 (553)
Q Consensus 248 l~~~v~l~~~~~ 259 (553)
+.|.|+|+++.+
T Consensus 220 ~~f~v~i~~I~~ 231 (408)
T TIGR00115 220 ATFKVTVKEVKE 231 (408)
T ss_pred EEEEEEEEEecc
Confidence 999999999953
No 108
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.43 E-value=3.8e-06 Score=99.93 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=93.2
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHH-------------------------------Hhhhhh
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-------------------------------FVGKRN 447 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~-------------------------------~~~~~~ 447 (553)
..+...|..++..|++++|+..|++|++ .+|.+...... ...+..
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 3456788999999999999999999998 45554321100 011123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
..+.++|.++...+++.+|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++.
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 45667899999999999999999999999999999999999999999999999999999999999873
No 109
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.43 E-value=2.9e-06 Score=76.14 Aligned_cols=98 Identities=30% Similarity=0.343 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCCHHH
Q 008788 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG----------ECRKSIEACNKVLDANPAHVKG 483 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~----------~~~~A~~~~~~al~~dp~n~ka 483 (553)
|+.|.+.|..+.. .+|.+ ...++|-|.+++.+. .+++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~----~nP~D-----------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYA----KNPLD-----------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHH----hCcHh-----------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 6778888888777 67877 456667776666653 3678999999999999999999
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 484 LYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 484 ~~r~g~a~~~lg~-----------~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
++.+|.||..++. |+.|..+|++|..++|+|. ..++.|....+
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~k 125 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHh
Confidence 9999999998776 7899999999999999984 46776766654
No 110
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.42 E-value=5.6e-07 Score=70.96 Aligned_cols=65 Identities=25% Similarity=0.409 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
...+++|+|.+|..+++|++|+.++++++++. |.-+.+++++|.++..+|++++|++.+++|+++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999772 223778999999999999999999999999876
No 111
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.41 E-value=3.6e-06 Score=96.93 Aligned_cols=104 Identities=24% Similarity=0.393 Sum_probs=89.7
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|++++|+..|+++++ ..|.+ ..+++.+|.+++..++|.+|+..+++++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 188 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRS-----------LYAKLGLAQLALAENRFDEARALIDEVLTA 188 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------hhhHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456677899999999999999999999998 56655 457788888888889999999999999888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+|.+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence 888888999999999999999999999999998888763
No 112
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.40 E-value=6e-06 Score=75.64 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=85.7
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-- 480 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n-- 480 (553)
...+.+|-...|..+...+...++ .... .....+++++|.++..+++|++|+..+.+++.+.|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~~---------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 4 SQRNDNFIDKTFTIVADILLRILP----TTSG---------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD 70 (168)
T ss_pred ccccccccccccccchhhhhHhcc----CCch---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence 355677777777777777755443 2221 1236789999999999999999999999999997653
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 481 -VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 481 -~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
+-+|+.+|.++..+|++++|++.|++|++++|.+. .....+..+..
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~~la~i~~ 117 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALNNMAVICH 117 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Confidence 45899999999999999999999999999999863 34444443333
No 113
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.39 E-value=4.9e-06 Score=95.82 Aligned_cols=98 Identities=15% Similarity=0.313 Sum_probs=74.8
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|..+++.|+|++|+..|++++. ..|.+ ..+.+++.++.++|++++|+..+.++++.+|++
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALK----RAPSS------------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCc------------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44577888889999999999999888 44433 345667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 7777777777777777777777777777777765
No 114
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.38 E-value=7.3e-06 Score=85.59 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=63.0
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|..+++.+++++|+..|+++++ ..|.+ ..+++.+|.++.++|++++|+..+.+++..+|.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALA----ADPQC-----------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh----HCcCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 44566667777888888888888777 33333 3355566666666666666666666666666654
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 481 -VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 481 -~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
..++..++.+|..+|++++|+..++++++++|++
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 2345566666666666666666666666666654
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=6.5e-06 Score=79.72 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=87.6
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc--------CCHHHHHHHH
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------GECRKSIEAC 470 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~~~ 470 (553)
..+...|..+++.+++++|+..|+++++ ..|.+.. ...+++++|.|+..+ +++.+|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPD--------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 3456789999999999999999999999 5665421 123678899999876 7899999999
Q ss_pred HHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 471 NKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 471 ~~al~~dp~n~ka~-----------------~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+++++.+|++..++ +.+|.+++..|++++|+..|+++++..|++
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 99999999986542 467889999999999999999999998875
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=8.3e-07 Score=67.88 Aligned_cols=67 Identities=27% Similarity=0.397 Sum_probs=58.8
Q ss_pred ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008788 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (553)
Q Consensus 408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~ 487 (553)
+++.|+|++|+..|++++. ..|.+ ..+++++|.||++.|++++|...+.+++..+|+++..+.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ----RNPDN-----------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH----HTTTS-----------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3678999999999999999 78877 67889999999999999999999999999999987777666
Q ss_pred HH
Q 008788 488 GM 489 (553)
Q Consensus 488 g~ 489 (553)
++
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 117
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.36 E-value=5.5e-06 Score=94.28 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=94.2
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
......+..+...|++++|+..+++++. ..|.+ ..+++++|.++..++++.+|+..+++++.++|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~----~~P~n-----------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAY----NAPGN-----------QGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 3445677788899999999999999999 67877 56899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
++..+++.+|.++..+++|++|...++++++.+|++.
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999973
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.35 E-value=4.6e-06 Score=73.85 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
....+.+|.-+...|++++|...++.+..+||.|+..||.+|.|+..+|+|++|+..|.+|+.++|++. .....+..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-QAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Confidence 445677888889999999999999999999999999999999999999999999999999999999864 3444444443
Q ss_pred H
Q 008788 527 K 527 (553)
Q Consensus 527 ~ 527 (553)
.
T Consensus 114 L 114 (157)
T PRK15363 114 L 114 (157)
T ss_pred H
Confidence 3
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.35 E-value=7.3e-06 Score=65.31 Aligned_cols=80 Identities=28% Similarity=0.444 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
+++++|.++...+++.+|+..+.++++..|.+..+++.+|.++...+++++|+..|++++++.|.+. .+...+..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-hHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999864 344444444443
Q ss_pred H
Q 008788 529 R 529 (553)
Q Consensus 529 ~ 529 (553)
.
T Consensus 81 ~ 81 (100)
T cd00189 81 L 81 (100)
T ss_pred H
Confidence 3
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.34 E-value=1.1e-05 Score=87.55 Aligned_cols=113 Identities=21% Similarity=0.333 Sum_probs=73.3
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHH--------------H---------HhhhhhHHHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK--------------V---------FVGKRNLLHLNV 453 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~--------------~---------~~~~~~~~~~nl 453 (553)
.+..+...+|.+|-+|++++|.+...++|+ .+|.+..... . +...-...|..+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk----qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIK----QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 477888999999999999999999999998 5665532110 0 000001234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
|....+++.+.+|+-++++||..+|.|.+.+++++..|.++|++..|...|.+++.+.|.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 555555566666666666666666666666666666666666666666666666666663
No 121
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.8e-06 Score=79.72 Aligned_cols=105 Identities=21% Similarity=0.334 Sum_probs=91.4
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKV 473 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~a 473 (553)
.++.+.-.|..++..+++..|...|.+|++ +.|++ ..++.-+|.++.... .-.++...+++|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n-----------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR----LAGDN-----------PEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 356677899999999999999999999999 77877 445666666655543 467899999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (553)
Q Consensus 474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~ 516 (553)
|..||.|+.+++.+|..+++.|+|.+|...++..|++.|.+.+
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999998743
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.32 E-value=8.4e-06 Score=69.38 Aligned_cols=100 Identities=24% Similarity=0.313 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAAL 522 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~--~~~~~~l 522 (553)
..++++|..+++.++|++|+..|.+++..+|++ ..+++.+|.++...+++++|+..|++++..+|++. ..+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467899999999999999999999999999876 67999999999999999999999999999999863 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q 008788 523 SKLKKQRRKLKVRLENSLKGCLTRSL 548 (553)
Q Consensus 523 ~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (553)
..+....... .+-.+.|..+....+
T Consensus 83 ~~~~~~~~~~-~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDK-EKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCCh-HHHHHHHHHHHHHCc
Confidence 4443333222 223345555544433
No 123
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.31 E-value=6.1e-06 Score=85.05 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
+...|..++..++|.+|+..+++||+++|+++.+|+.+|.+|..+|+|++|+.++++|++++|++ ..+...+..+...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999987 3455444444333
No 124
>PRK01490 tig trigger factor; Provisional
Probab=98.27 E-value=4.2e-06 Score=88.81 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=71.4
Q ss_pred CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCce
Q 008788 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247 (553)
Q Consensus 168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~ 247 (553)
.++.||.|+++|++.. +|..++++ ...++.|.+|.+++++||+++|.||++|+++.|.++....|+... -++.+
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~-~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~----lagk~ 230 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGG-KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED----LAGKE 230 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCC-CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----CCCCe
Confidence 4789999999999975 88877654 456899999999999999999999999999999887655554322 15689
Q ss_pred EEEEEEEeeeee
Q 008788 248 VHFEVELVHLIQ 259 (553)
Q Consensus 248 l~~~v~l~~~~~ 259 (553)
+.|.|+|+++.+
T Consensus 231 ~~f~v~v~~V~~ 242 (435)
T PRK01490 231 ATFKVTVKEVKE 242 (435)
T ss_pred EEEEEEEEEecc
Confidence 999999999953
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=6.6e-06 Score=73.38 Aligned_cols=97 Identities=21% Similarity=0.350 Sum_probs=65.7
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
......|..++..|+|++|+..|++++. ..+++ .+...+.+++|.|++.+++|++|+..++. +.-.+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~----~~~d~--------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~ 115 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALA----NAPDP--------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDEA 115 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcc
Confidence 3445677777777888888888887777 22211 12244667778888888888888887755 33334
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
-.+.++..+|.++...|++++|+..|++||
T Consensus 116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 455667777888888888888888877764
No 126
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.25 E-value=1.6e-05 Score=67.86 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=83.6
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+.+.+..+-..|+.++|+..|++|+. .....+ ....++.++|.++..+|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~~--------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA----AGLSGA--------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCch--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 355677788889999999999999998 333221 13568899999999999999999999999999887
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 480 ---HVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 480 ---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+.....-++.++..+|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888899999999999999999988774
No 127
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=9.7e-06 Score=81.50 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=96.7
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+-++||..|..|++++|...|++||+ -+ .-...+++|+++.+-++++.++|++++-+.-.+-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~----nd-----------asc~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALN----ND-----------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHc----Cc-----------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999998 11 1235689999999999999999999999988888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
-+|+..++.++.+|..+.+...|+++|.++..+-|++ +.+...|..|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~d-p~ilskl~dl 601 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND-PAILSKLADL 601 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC-HHHHHHHHHH
Confidence 8899999999999999999999999999999999986 4455445444
No 128
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.8e-06 Score=87.81 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=66.4
Q ss_pred CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEE--EEeCCccCCCCCCCCCCCCc
Q 008788 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVI--YVTSQYLTPSPLMPVVEGCE 246 (553)
Q Consensus 169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~--~v~~~~~~g~~~~~~i~~~~ 246 (553)
++.||.|+|+|.| ..||..|... ..+.+.+.+|+++++|||+.+|.||+.|+...| +.|.+|.-++. .++
T Consensus 158 a~~gD~v~IDf~g-~iDg~~fegg-~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aGK 229 (441)
T COG0544 158 AENGDRVTIDFEG-SVDGEEFEGG-KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AGK 229 (441)
T ss_pred cccCCEEEEEEEE-EEcCeeccCc-cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CCC
Confidence 8889999999999 6788877643 446789999999999999999999999999875 44444433222 567
Q ss_pred eEEEEEEEeeee
Q 008788 247 EVHFEVELVHLI 258 (553)
Q Consensus 247 ~l~~~v~l~~~~ 258 (553)
+..|.|+|+.+.
T Consensus 230 ~a~F~V~vkeVk 241 (441)
T COG0544 230 EATFKVKVKEVK 241 (441)
T ss_pred ceEEEEEEEEEe
Confidence 889999999985
No 129
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.21 E-value=4.6e-06 Score=65.69 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=60.9
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|+|++|+..|++|++......+. ....+.++.|+|.|+..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356778899999999999999999999999974444331 122367899999999999999999999999998
Q ss_pred hC
Q 008788 476 AN 477 (553)
Q Consensus 476 ~d 477 (553)
+.
T Consensus 75 i~ 76 (78)
T PF13424_consen 75 IF 76 (78)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.21 E-value=6.7e-06 Score=63.75 Aligned_cols=69 Identities=26% Similarity=0.467 Sum_probs=61.8
Q ss_pred ccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008788 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY 485 (553)
Q Consensus 406 ~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~ 485 (553)
+.+++.++|++|+..+++++. ++|.+ ..++.++|.|+.++|+|.+|+..++++++.+|++..+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE----LDPDD-----------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH----hCccc-----------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 457889999999999999999 77776 678999999999999999999999999999999988776
Q ss_pred HHHH
Q 008788 486 RRGM 489 (553)
Q Consensus 486 r~g~ 489 (553)
-++.
T Consensus 68 ~~a~ 71 (73)
T PF13371_consen 68 LRAM 71 (73)
T ss_pred HHHh
Confidence 6554
No 131
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.20 E-value=1.4e-05 Score=82.03 Aligned_cols=71 Identities=28% Similarity=0.376 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...+..+.+.|..|++.|+|++|+..|++||+ ++|.+.+. ..+|+|+|.||.++|++++|+.++.+|+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA--------~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEA--------QAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44678888999999999999999999999999 78877320 1469999999999999999999999999
Q ss_pred hhC
Q 008788 475 DAN 477 (553)
Q Consensus 475 ~~d 477 (553)
++.
T Consensus 140 els 142 (453)
T PLN03098 140 RDY 142 (453)
T ss_pred Hhc
Confidence 983
No 132
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.20 E-value=1.7e-05 Score=79.34 Aligned_cols=137 Identities=11% Similarity=0.217 Sum_probs=103.5
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~----~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
+.......|..+|++++|..|...|+.||+++..- .|...+ ...+-....-+...+..||+++++.+.|+.+..+
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~-~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKAS-AEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-hhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 44555678899999999999999999999988653 222211 1223333345677899999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHHHHH
Q 008788 473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV---DKSSEPDATAALSKLKKQRRKLKV 534 (553)
Q Consensus 473 al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l---~P~~~~~~~~~l~~l~~~~~~~~~ 534 (553)
.+.++|.+..-+.|+|.|+..|.+|.+|-+.+-.|.-+ .-.+..-+.+.++...+.+-+..-
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqamiEeAi 318 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMIEEAI 318 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887766543 333333455666666665544433
No 133
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=2.3e-05 Score=75.17 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=92.6
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+...++.+-.+++.|+|..|...|..-++ .-|.+. ....+++=|+.|++.+|+|.+|...+..+.+-.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~----~YP~s~--------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIK----KYPNST--------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCc--------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 34488999999999999999999999888 344331 124688889999999999999999999999998
Q ss_pred CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 478 PAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 478 p~n~k---a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
|.++| ++|.+|.+...+|+.++|...|+++++--|+..
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 87765 599999999999999999999999999999964
No 134
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=7.1e-06 Score=79.55 Aligned_cols=110 Identities=20% Similarity=0.339 Sum_probs=88.8
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP---A 479 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp---~ 479 (553)
..|..+|-.++.+.|+..|++.|. +.-.+ ..+++|+|+|.+-.++++-++..+.+|+..-. .
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLq----mG~~s-----------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~ 393 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQ----MGAQS-----------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ 393 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHH----hcCCC-----------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch
Confidence 445566667777777777777776 33333 46899999999999999999999999997743 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
-+..||++|.+..-.|++..|.++|+-||.-||+| .++.+.|..|+.+
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r 441 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAAR 441 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhh
Confidence 56789999999999999999999999999999997 4566666666543
No 135
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.16 E-value=2.1e-05 Score=72.38 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
..+++++|.++..++++++|+.+|.+++.+.|+. ..+++.+|.++..+|+|++|+..|+++++++|++. .....+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP-SALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-HHHHHHH
Confidence 6689999999999999999999999999987653 57999999999999999999999999999999863 3443333
Q ss_pred HH
Q 008788 524 KL 525 (553)
Q Consensus 524 ~l 525 (553)
.+
T Consensus 114 ~~ 115 (172)
T PRK02603 114 VI 115 (172)
T ss_pred HH
Confidence 33
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=5.6e-05 Score=77.48 Aligned_cols=109 Identities=28% Similarity=0.328 Sum_probs=83.2
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
..+..+++.++..+|.+.+++|+. ..|.. ..+..|+|.++++.|++.+|+...+..+..+|+++.
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~----l~P~~-----------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALA----LDPNS-----------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh----cCCCc-----------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 456667777888888888888888 56654 567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
.|..+|++|..+|+-.+|...+...+.+.-.-+ .+...+...++
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~-~A~~~l~~A~~ 453 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLE-QAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHH-HHHHHHHHHHH
Confidence 999988888888888777777777777765532 24434443333
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.12 E-value=2.6e-05 Score=84.92 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=89.2
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
+.+.-+.+.+..+...|+|.+|+..|..++. ..+.. ...+|+++|.||+.++.|++|+.++.+||.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~----~~~~~----------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITN----REGYQ----------NAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhc----Ccccc----------chhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3466788889999999999999999999877 22222 156899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
++|+|..+...++..+.++|++++|.+.+.....-|
T Consensus 478 ~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 478 LAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999999999998876444
No 138
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=8.3e-06 Score=81.99 Aligned_cols=98 Identities=17% Similarity=0.310 Sum_probs=87.8
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ 481 (553)
.+.||.+|++.+|.+|++.|+.||+....+ .++.+..+++|++..+.++|+|+.|+..++..++..| |.
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsi----------nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-n~ 309 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSI----------NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-NF 309 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhcccc----------chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-cH
Confidence 378999999999999999999999944333 2445688999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
++-+++-.|++..|+-+..++.|++.+.+
T Consensus 310 ~a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 310 IAALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred HhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 88889999999999999999999999875
No 139
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.11 E-value=0.00013 Score=65.06 Aligned_cols=111 Identities=18% Similarity=0.104 Sum_probs=85.2
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-------CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-------PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-------~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (553)
..+...|......++...++..|.+|+..+..-- ++-......+......+...++.++...+++.+|+..|.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3344556666677889999999999999654311 111233455666677888899999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 472 ~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+++..||.+..+|..+-.+|...|++.+|++.|+++.+
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
No 140
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.10 E-value=3.6e-05 Score=81.63 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=91.5
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
+..+..++..|+.+...++|.+|+..|++|+..+....-.+ ....+..+.|||..|.+.|+|.+|..+|.+|+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 34455666799999999999999999999999877543332 22346789999999999999999999999999
Q ss_pred hhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 475 DAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 475 ~~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
++- |.-...+-..+..+...+++++|...|++++++
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 874 334567888999999999999999999999987
No 141
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.09 E-value=4.4e-05 Score=86.26 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=105.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh-h---------------H-HHHHhh------hhhHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-E---------------E-GKVFVG------KRNLLHLNVA 454 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~-e---------------e-~~~~~~------~~~~~~~nla 454 (553)
+...+..+...++.|+|..|+..|+++++ .+|.+. . + ...++. .-...+..+|
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 44667888899999999999999999998 455442 0 0 011111 1122344447
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008788 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKV 534 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (553)
.++..+++|++|++.++++++.+|+|+.+++.++.++..++++++|++.++++.+++|.+. .. ..+..+...... ..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-~~-l~layL~~~~~~-~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-NY-MTLSYLNRATDR-NY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-HH-HHHHHHHHhcch-HH
Confidence 7999999999999999999999999999999999999999999999999999999999853 22 334444333222 22
Q ss_pred HHHHHHHhhcccccCC
Q 008788 535 RLENSLKGCLTRSLGK 550 (553)
Q Consensus 535 ~~~~~~~~mf~~~~~~ 550 (553)
+.-..|++++...+++
T Consensus 187 ~AL~~~ekll~~~P~n 202 (822)
T PRK14574 187 DALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3677788887776654
No 142
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=5.5e-05 Score=71.75 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~ 516 (553)
++.-++..++..|+|.+|+..++++..++|++.++|.-+|.+|.++|++++|+..|.+|++|.|++..
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~ 169 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS 169 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch
Confidence 44458888999999999999999999999999999999999999999999999999999999998654
No 143
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=6e-06 Score=53.61 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
+++|+++|.++..+++|++|+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 467777777777777777777777777777775
No 144
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=8.8e-05 Score=76.07 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=92.1
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
..+-++...|..|+++.|...++.-+. ..|++ .-++.-.+..+++.++.++|++.+.+++.++|+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~----~~P~N-----------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~ 372 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA----AQPDN-----------PYYLELAGDILLEANKAKEAIERLKKALALDPN 372 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence 344455555666666666666665444 56666 456667789999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
+.-..+.+|.++++.|++.+|+..+++.+.-+|++ +..+..|.......
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay~~~ 421 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-PNGWDLLAQAYAEL 421 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHh
Confidence 99999999999999999999999999999999997 66888777665544
No 145
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.04 E-value=5.5e-05 Score=82.99 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=99.5
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
..+--.+|.+|-.|+|..+...+.-|+..- . .....+..++++|.||..+|+|++|..+|.+++..++
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~-------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNT-----E-------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----h-------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 345567889999999999999999998832 1 1233467899999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 479 AH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 479 ~n-~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
+| .=++|.+|+.+++.|+++.|..+|+++++..|++ .+....|..+-...
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETMKILGCLYAHS 389 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHHHHHHhHHHhh
Confidence 99 8899999999999999999999999999999997 45666665554444
No 146
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=9.1e-05 Score=79.72 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=85.8
Q ss_pred HHHHHhhhccccccC---CHHHHHHHHHHHHHHhhccCCCCh---------------------hHHHH----H-------
Q 008788 398 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDD---------------------EEGKV----F------- 442 (553)
Q Consensus 398 a~~~k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~~~~~---------------------ee~~~----~------- 442 (553)
|-.+.-+|..++.+. .+.+|+.+|++|++ ++|.+. ..... .
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 445556666665443 47889999998887 444331 11000 0
Q ss_pred -hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 443 -VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 443 -~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
......+|.-+|..++..+++++|..++++|++++| +.-+|+.+|+++...|++++|.+.|++|+.++|.+.
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 111124577788888899999999999999999999 688999999999999999999999999999999864
No 147
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.99 E-value=5.7e-05 Score=82.85 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=106.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
.+.+.+.|..+|..|++..|...+.+|+..+......+ +. ....+.+.+|+|.|+-.++++..|...|..++...
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d--e~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD--EG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc--cc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 45577899999999999999999999998643211111 11 22336678999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL 532 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~ 532 (553)
|..+.||.|+|......++..+|...++.++.+|..| ++++..+-.+..+..+.
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n-p~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN-PNARSLLGNLHLKKSEW 580 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC-cHHHHHHHHHHHhhhhh
Confidence 9999999999977777789999999999999999887 67998888776655443
No 148
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.99 E-value=0.0001 Score=78.23 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=93.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA- 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 476 (553)
...+...+..++.+|+|+.|+..+++|++.+....-.. .........++|..|+.+++|.+|+..|.+||.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44455589999999999999999999999765433211 1122345557999999999999999999999976
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHH
Q 008788 477 -------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS----SEPDATAALSKLKK 527 (553)
Q Consensus 477 -------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~----~~~~~~~~l~~l~~ 527 (553)
+|.-+-++.++|.+|...|+|++|..++++|+++--. +..++...|..+..
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 3555778999999999999999999999999987321 22345555554433
No 149
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.98 E-value=7.6e-05 Score=84.35 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
|+|.+|+..|+++++ .+|.+ ..++.-++..+..++++.+|+..+.+++..+|.+.-. ..++..+
T Consensus 116 gdyd~Aiely~kaL~----~dP~n-----------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 116 KRWDQALALWQSSLK----KDPTN-----------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred CCHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 889999999999988 78877 3466678999999999999999999999999985544 3345555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 492 ~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
...+++.+|++.|+++++++|++.. +..++-.+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e-~~~~~~~~ 212 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEE-VLKNHLEI 212 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 5577777799999999999999854 44333333
No 150
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.97 E-value=7.1e-05 Score=77.12 Aligned_cols=110 Identities=20% Similarity=0.165 Sum_probs=88.6
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH--------------------HHHH------hhhhhHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--------------------GKVF------VGKRNLLHLNV 453 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee--------------------~~~~------~~~~~~~~~nl 453 (553)
....++..++..|++.+|+..+.++++ ..|.+... .+.+ .......+.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 344678888999999999999999987 33433211 0111 01112355688
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
|.++..+|++.+|+..++++++++|+++.++..+|.++..+|++++|+..+++++.+.|.
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999875
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.97 E-value=4.3e-05 Score=76.22 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=96.3
Q ss_pred HHHHHHhhhcccccc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 397 EAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~-g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
.+..+...|..+... +++++|+..|++|++++..... ......++.++|.++.++++|++|+..+.++..
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467788888888888 9999999999999998765431 112357889999999999999999999999987
Q ss_pred hCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008788 476 ANPA------HVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSL 540 (553)
Q Consensus 476 ~dp~------n~k-a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (553)
..-+ +++ .+++.+.|++..|++..|...|++....+|... -.++-+.+...+...+......|
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~--~s~E~~~~~~l~~A~~~~D~e~f 253 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA--SSREYKFLEDLLEAYEEGDVEAF 253 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST--TSHHHHHHHHHHHHHHTT-CCCH
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--CcHHHHHHHHHHHHHHhCCHHHH
Confidence 5321 344 456788899999999999999999999999642 12334445555555555443333
No 152
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.96 E-value=0.00031 Score=58.29 Aligned_cols=110 Identities=20% Similarity=0.340 Sum_probs=82.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA- 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 476 (553)
+-.....|...++.|-|.+|...|++|.+.-..+.+...-+ ..-.-.-||.-|+-++..+++|++++....++|..
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFD---h~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFD---HDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcc---cccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 33445677788889999999999999999766654432111 11122568889999999999999999999999954
Q ss_pred ------CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 477 ------NPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 477 ------dp~----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+.+ ++.+.|.||.++..+|..++|+..|+.+-+.
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333 4678899999999999999999999988653
No 153
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.4e-06 Score=79.65 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=75.0
Q ss_pred ccccCCCceEEEEEecCCCCC-CCCCCCEEEEEEEEEecC--CcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCC
Q 008788 23 RMKIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (553)
Q Consensus 23 ~~~~~~~g~~~~i~~~G~g~~-~~~~gd~V~v~y~~~~~~--g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m 99 (553)
+..+...|+.++|+..|.|+- ....|..|.+||.....+ ++++|+|+. .++|+.+++|...-+|-|+..|..|
T Consensus 4 ra~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk----~gkPmeiiiGkkFkL~VwE~il~tM 79 (329)
T KOG0545|consen 4 RALLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK----VGKPMEIIIGKKFKLEVWEIILTTM 79 (329)
T ss_pred hhhccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh----cCCCeEEeeccccccHHHHHHHHHH
Confidence 445677899999999999984 356899999999988754 689999998 8999999999999999999999999
Q ss_pred CCCcEEEEEEcC
Q 008788 100 LKGEVSMFKMKP 111 (553)
Q Consensus 100 ~~G~~~~~~ip~ 111 (553)
+++|.+.|++.-
T Consensus 80 ~v~EvaqF~~d~ 91 (329)
T KOG0545|consen 80 RVHEVAQFWCDT 91 (329)
T ss_pred hhhhHHHhhhhh
Confidence 999999998864
No 154
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.95 E-value=2e-05 Score=51.02 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+++|+.+|.+++.+|+|++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888864
No 155
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.94 E-value=2.4e-05 Score=84.43 Aligned_cols=114 Identities=28% Similarity=0.493 Sum_probs=100.9
Q ss_pred ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CCHHHHH
Q 008788 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GECRKSI 467 (553)
Q Consensus 390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl--~~~~~A~ 467 (553)
+.+..+..+..++.+||.+|+.++|..|.-.|..++..+...+.. ...+..|.+.|++.+ ++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhc
Confidence 556677889999999999999999999999999999954432222 267888999998876 5899999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
..|+-|+...|...+++++|+.+|..++.++-|.+++......+|++
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999997
No 156
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=5.2e-05 Score=80.87 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=89.9
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+.+.+..|+..+.+++|++|.+.++.+++ ++|.. ...|++++.|+++++++..|..+|.+.+.++
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~----~nplq-----------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLE----INPLQ-----------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhh----cCccc-----------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 44556677778888999999999999998 56544 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
|+|..+|.+++.+|..+++-.+|...++.|++-+-+
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999998754
No 157
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.92 E-value=8e-05 Score=76.75 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=86.1
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
..+...|..+...|++.+|+..|+++++ ..|.+ ..++.++|.++...|++++|+.++.+++...|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3344677788899999999999999999 67766 56789999999999999999999999999987
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 479 AHV----KGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 479 ~n~----ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
.+. ..++.+|.++..+|++++|+..|++++...|
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 432 4567899999999999999999999987777
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.90 E-value=0.00014 Score=71.39 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=74.3
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHH
Q 008788 448 LLHLNVAACL-LKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAA 521 (553)
Q Consensus 448 ~~~~nla~~~-~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~--~~~~~ 521 (553)
...++.|.++ ++.++|++|+..|...+...|++ +.|+|.+|.+|+..|+|++|+..|+++++..|++.. ++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5678888887 66799999999999999999988 589999999999999999999999999999998643 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Q 008788 522 LSKLKKQRRKLKVRLENSLKGCLTRSL 548 (553)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (553)
+..+.... ....+-++.|..+....+
T Consensus 223 lg~~~~~~-g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDK-GDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHCc
Confidence 22232221 223344555555544443
No 159
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.89 E-value=1.5e-05 Score=51.75 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008788 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502 (553)
Q Consensus 469 ~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~ 502 (553)
.|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 160
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00017 Score=75.28 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.++.-||..|...++|++|+++++.||..+|+|...|.|+|-++..-.+.++|+..|++||+|.|..
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 4777889999999999999999999999999999999999999999999999999999999999973
No 161
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00026 Score=68.93 Aligned_cols=138 Identities=14% Similarity=0.201 Sum_probs=101.8
Q ss_pred CCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHH----------HhhccCCCChhHHH---------------HH
Q 008788 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR----------DFNHVNPQDDEEGK---------------VF 442 (553)
Q Consensus 388 ~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~----------~l~~~~~~~~ee~~---------------~~ 442 (553)
+++++++ ...+.+.|..++..|-|++|...|..-.+ .|-.+-... .||+ ..
T Consensus 100 dlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 100 DLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred CCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccc
Confidence 3455554 55677888888888888888887765433 110000000 1111 12
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (553)
Q Consensus 443 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l 522 (553)
.-..+.+|+-+|+.++-..+.+.|+....+|+..||.++.|-..+|.++...|+|+.|++.++++++-||+--+++...|
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 22345689999999999999999999999999999999999999999999999999999999999999998655566556
Q ss_pred HHHHHHH
Q 008788 523 SKLKKQR 529 (553)
Q Consensus 523 ~~l~~~~ 529 (553)
..|-.++
T Consensus 256 ~~~Y~~l 262 (389)
T COG2956 256 YECYAQL 262 (389)
T ss_pred HHHHHHh
Confidence 5555444
No 162
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00018 Score=72.03 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=40.9
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...+.-+|+.+...++.++|+-.|+.|.. +.|-+ ..+|--+-.||+..+.+++|...++.++
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~r-----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQM----LAPYR-----------LEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHh----cchhh-----------HHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 44567889999999999999999999988 44433 3455555555555555555444444443
No 163
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.81 E-value=3.3e-05 Score=50.09 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
.+|+++|.||+.+++|++|+.+|++||+++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 579999999999999999999999999999974
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=97.79 E-value=0.00034 Score=72.21 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=70.9
Q ss_pred HhhhccccccC---CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc---------CCHHHHHHH
Q 008788 402 RVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---------GECRKSIEA 469 (553)
Q Consensus 402 k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl---------~~~~~A~~~ 469 (553)
.-+|...+.++ ..++|+..+.+|++. ..++|.. ..+|.-+|.||+.+ ..-.+|.+.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-~~ldp~~-----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNK-SDIQTLK-----------TECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhc-ccCCccc-----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 34444444333 456788888888830 0045544 56777777777664 134567778
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 470 ~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+.+|+++||.++.|++.+|.++...++++.|...|++|+.++|+.
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence 888888888888888888888888888888888888888888875
No 165
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00014 Score=75.20 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=75.9
Q ss_pred hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (553)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka 483 (553)
.+..++..++..+|++..++++. ..|.+ ..++...|..+++.++++.|+..+.+|.++.|++.++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~----~~p~d-----------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~ 270 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALK----ENPQD-----------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFET 270 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHH
Confidence 34444455677788888888886 55555 5677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 484 LYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 484 ~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
|+.++.+|..+|+|+.|+..++.+--
T Consensus 271 W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 271 WYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999988886543
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=6e-05 Score=60.27 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008788 460 LGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRL 536 (553)
Q Consensus 460 l~~~~~A~~~~~~al~~dp~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~ 536 (553)
.++|+.|+..++++++.+|. +...+|.+|.||+++|+|++|+..+++ ++++|.+ ....-.+.+|-..+.+.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHH
Confidence 57899999999999999995 567788899999999999999999999 8888875 456666666666665555443
No 167
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.75 E-value=0.00034 Score=78.66 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=52.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+......+...+++++|+.....+++ ..|.. ..+|+.+|..++..+++.++... .++.+-
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~-----------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKS-----------ISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcc-----------eehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 33444555566677888888888887777 34433 33344444444444333333222 222222
Q ss_pred -------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 478 -------------------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 478 -------------------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
++|-.|||.+|.||-++|++++|.+.|+++|+++|+|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n 149 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN 149 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc
Confidence 2223555555555555555555555555555555554
No 168
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.74 E-value=0.00016 Score=72.11 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=82.2
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
.....+++.+++.++...+.++.... . .+.+ ..++..+|.++.+.|++++|+..+.+||+++|+|..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~-----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELP-A-APDS-----------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T-----T------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcc-C-CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 34445667788888888888866510 0 1122 568889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR 530 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (553)
++..++.++...|++++|++.++...+..|++. .+...+..+...+.
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~lg 228 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-DLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-CHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-HHHHHHHHHhcccc
Confidence 999999999999999999999988888876653 35555555444443
No 169
>PRK11906 transcriptional regulator; Provisional
Probab=97.73 E-value=0.00038 Score=71.83 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
...-.+|.+.-.+|++ +++.| ..++..+|......+++..|+..+++|+.++|+.+.+||.+|..
T Consensus 317 ~~~~~~a~~~A~rAve----ld~~D-----------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 317 ELAAQKALELLDYVSD----ITTVD-----------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred hHHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4455667777777777 67766 67888999988899999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 491 YMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 491 ~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+...|+.++|++.+++|++|+|.-
T Consensus 382 ~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccCchh
Confidence 999999999999999999999973
No 170
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.71 E-value=0.0016 Score=68.72 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh----------------hHH-HHH-------hhhhhHH
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------EEG-KVF-------VGKRNLL 449 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~----------------ee~-~~~-------~~~~~~~ 449 (553)
+...+.....+|-..+..|+|..|.+...++.+. .|... +.. +.+ ......+
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~ 155 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV 155 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH
Confidence 4446777788888899999999999999888773 22210 000 000 0001123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
...++..++..++++.|+..+++.++..|+++.+++..+.++...|+|++|++.+.+.++....
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 3334666677777777777777777777777777777777777777777777777777766443
No 171
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00022 Score=69.44 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=80.0
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ 481 (553)
.+.|.++++.|-+.+|.+.++.+|. ..+. ...++.++-+|.+..++..|+..+...|+.-|.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPH------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh----cCCc------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence 3789999999999999999999998 2222 34567778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.-+.-.|.+|..++++++|.+.|+.+++++|.|
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN 323 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 888888888888888888888888888888754
No 172
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.68 E-value=0.0022 Score=61.18 Aligned_cols=124 Identities=21% Similarity=0.304 Sum_probs=98.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+.+.|....+.|+|.+|++.|++... ..|..+. ...+.+.++.+++|.++|.+|+...++=+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~----~~p~s~~--------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS----RHPFSPY--------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc--------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 67788999999999999999999998776 6665532 13567789999999999999999999999999
Q ss_pred CCCHH---HHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHH
Q 008788 478 PAHVK---GLYRRGMAYMALGE--------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRRKLK 533 (553)
Q Consensus 478 p~n~k---a~~r~g~a~~~lg~--------~~~A~~~l~~al~l~P~~~--~~~~~~l~~l~~~~~~~~ 533 (553)
|.++. ++|.+|.+++..=+ -.+|...|+..+.--|++. .+++..+..++.++...+
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 87765 68889999876432 3568888999999999864 456666666666655443
No 173
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.67 E-value=0.00028 Score=74.47 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=86.1
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+..+.-.+|..++|...++.-+..|+ -.|... ..+.-.|+.+..+|+-++|...+..+++.|+.+
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eHg-----------eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S 74 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK----KFPEHG-----------ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS 74 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH----hCCccc-----------hhHHhccchhhcccchHHHHHHHHHHhccCccc
Confidence 33455556667777777777766666 445442 233445666667888888999898899988888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK 533 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (553)
.-+|.-+|..+..-.+|++|+++|+.||+++|+| ..+.+-|..|+.+++..+
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-LQILRDLSLLQIQMRDYE 126 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhh
Confidence 8888888988888889999999999999999887 456666777766665443
No 174
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0016 Score=61.59 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=93.9
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------HHHhh------hhhHHHHHHHHHHHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------KVFVG------KRNLLHLNVAACLLK 459 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-----------------~~~~~------~~~~~~~nla~~~~k 459 (553)
-.|-.+-..|+|++|++.|..-|+ -+|.+.--. +.+.+ .-..+|.-+|..|+.
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 344455556888888888888776 344432110 00000 113578889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008788 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRL 536 (553)
Q Consensus 460 l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg---~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~ 536 (553)
+++|..|+-.+.+++-+.|.|+-.+-|+|..++-+| +++-|+++|.+|++++|.+ ..+.-.+-.|...+.+.-+.+
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~lc~~~la~~sk~~ 245 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIYLCGSALAQISKAE 245 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999988765 6788999999999999965 346666777777776554444
Q ss_pred H
Q 008788 537 E 537 (553)
Q Consensus 537 ~ 537 (553)
-
T Consensus 246 ~ 246 (289)
T KOG3060|consen 246 L 246 (289)
T ss_pred H
Confidence 3
No 175
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.65 E-value=0.00032 Score=50.33 Aligned_cols=48 Identities=19% Similarity=0.391 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR 530 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (553)
..+|.+|.++.++|+|++|++..+.+|+++|+|. .+..+...+..+++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999873 46655555555443
No 176
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.003 Score=56.18 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
....+..........+..+++..+...+.+.+. ..|... ....+.+.+|.+++..|++++|+..++.+
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~s~--------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPSSP--------YAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCh--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566666777777778888888777777666 344331 12457788999999999999999999999
Q ss_pred HhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 474 LDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 474 l~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
+...|+. ..+.+|+|.++...|+|++|+..|+.
T Consensus 75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9987654 46899999999999999999999976
No 177
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.64 E-value=0.0022 Score=67.32 Aligned_cols=106 Identities=12% Similarity=0.058 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
+.+.+......|-..+-.|+|.+|.+...++-+.. +.. ...+...|....++|+++.|..++.++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~----~~p-----------~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHA----EQP-----------VVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc----cch-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44466667778888888888888887666654411 000 111222233334555555555555555
Q ss_pred HhhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 474 LDANPAHVKG-LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 474 l~~dp~n~ka-~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+.+|++.-+ ..+.+..+...|+++.|++.++++++.+|+|
T Consensus 145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~ 186 (398)
T PRK10747 145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH 186 (398)
T ss_pred HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 5555544322 2233455555555555555555555555554
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.62 E-value=0.00015 Score=50.05 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g 488 (553)
++.+|.+|..+|++++|++.++++++.+|+|+.+++.+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 444555555555555555555555555555555555444
No 179
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.61 E-value=0.00069 Score=71.42 Aligned_cols=130 Identities=16% Similarity=0.020 Sum_probs=94.4
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
........+..+...|++++|...++++++ ..|++.. .....-+....+..++...++..++++++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~----~~pd~~~---------~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK----KLGDDRA---------ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCCccc---------chhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 345566788889999999999999999999 6665521 000112223334467889999999999999
Q ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008788 477 NPAHV--KGLYRRGMAYMALGEFEEAQRDFE--MMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKG 542 (553)
Q Consensus 477 dp~n~--ka~~r~g~a~~~lg~~~~A~~~l~--~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 542 (553)
+|+|+ ..+..+|..+++.|+|++|+++|+ ++++.+|++. ....+..+..+..+. .+-++.|++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~-~~A~~~~~~ 395 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDK-AEAAAMRQD 395 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCH-HHHHHHHHH
Confidence 99999 888899999999999999999999 6888999853 344666555544332 222444443
No 180
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.60 E-value=0.00016 Score=49.90 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
+.+++.+|.+|..+|++++|++.|+++++++|+| .+++..|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHhh
Confidence 3578999999999999999999999999999997 55666554
No 181
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.60 E-value=0.00023 Score=76.09 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
.+...+|...+..++|.+|.++++..++++|-....||++|.|..++++++.|..+|.+++.++|+| .++++.|...
T Consensus 486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~a 562 (777)
T KOG1128|consen 486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTA 562 (777)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHH
Confidence 3444445555567999999999999999999999999999999999999999999999999999998 4566665543
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.00024 Score=70.93 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=75.8
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+..-|+.+-..++|.+|...|.+|.++........ ....+|.+.+.|+.+. ++.+|+.++++|++
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~---------~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKF---------EAAKAYEEAANCYKKG-DPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HH---------HHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHH---------HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence 3466666677777788999999999999988665432211 1256777888887666 88899999888887
Q ss_pred hC--C----CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 008788 476 AN--P----AHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKV 510 (553)
Q Consensus 476 ~d--p----~n~ka~~r~g~a~~~l-g~~~~A~~~l~~al~l 510 (553)
+- . .-++++.++|.+|... ++++.|++.|++|+.+
T Consensus 103 ~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 62 1 1266788888888888 8999999999998887
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.00022 Score=71.41 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
.+..+...+-+.||.+|-.|+|++|+..-+.-|.+...... +.....++.|+|.||.-+++++.|+++|.+
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 34445566778999999999999999988887774332211 111246899999999999999999999998
Q ss_pred HHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 473 VLDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 473 al~~d------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
++.+- ...+..-|-+|.+|..+.+|+.|+.++++-|.+..
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77552 22456689999999999999999999998887654
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.0026 Score=57.41 Aligned_cols=102 Identities=19% Similarity=0.304 Sum_probs=87.7
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
......|+.+...|+|.+|...|.+|+.- +-..+ ...++.+|.+++..+++.+|....+++.+.+|
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSG---IFAHD-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 34567889999999999999999999982 11222 46788999999999999999999999999988
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 479 A--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 479 ~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
. .+......|.++..+|.+.+|...|+.++.-.|+-
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 4 57778888999999999999999999999999874
No 185
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.54 E-value=0.0018 Score=68.04 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=82.2
Q ss_pred hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008788 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484 (553)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~ 484 (553)
+....++|+++.|...|.+|.+ ..|++. .......+..++..++++.|+..++++++.+|+|+.++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~----~~~~~~----------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al 190 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAE----LADNDQ----------LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVL 190 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh----cCCcch----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4444789999999999999988 555441 12333458889999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 485 ~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
..++.+|...|+|++|++.+.+..+..+.+.
T Consensus 191 ~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 191 RLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999999988877653
No 186
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.53 E-value=0.0012 Score=70.83 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.-+++.+|++|..+|++.+|+.+.++||+..|..+..|+.+|+++.+.|++.+|.+.+..|-+||+.+
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 45778999999999999999999999999999999999999999999999999999999999999986
No 187
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.50 E-value=0.00024 Score=45.78 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
.+++++|.+++++++|++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999976
No 188
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.0027 Score=60.14 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008788 447 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501 (553)
Q Consensus 447 ~~~~~nla~~~~kl~---~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~ 501 (553)
..++..+|..++-+| ++.-|..++.++++++|.|..++|-.-.|..++-+...+.
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~ 245 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAE 245 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHH
Confidence 456667787777766 6888999999999999999999999988877766554443
No 189
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.47 E-value=0.00019 Score=46.32 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
++|+.+|.++..+|++++|++.|++|++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888888888888888888888888888874
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.0023 Score=54.71 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+++++|.++-.+|+..+|+..|.++++.... -..++..+|.++..+|++++|+..|++++.-.|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 36789999999999999999999999997543 3679999999999999999999999999998887
No 191
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.41 E-value=0.0005 Score=58.25 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.-|.+....++.+.|++.+.++|.+-|.++.||.+|++++...|+.++|++++++|++|.-.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 34666667899999999999999999999999999999999999999999999999999654
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.40 E-value=0.0015 Score=65.61 Aligned_cols=103 Identities=22% Similarity=0.221 Sum_probs=85.0
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN- 477 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d- 477 (553)
...-+.||.+.-.|+|+.|++.|++++.+...+.....| +..++.+|..|.-+++|..||.+..+-|++-
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE---------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE---------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH---------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999998865544433211 4566789999999999999999999977663
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 478 -----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 478 -----p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
-....|++-+|.+|..+|+.+.|+...++.+++
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 346789999999999999999999988888776
No 193
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.39 E-value=0.0024 Score=63.79 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
.++..|...|++..+ ..+.+ ..+++.+|.|++.+++|++|...+.+|+..+|+++.++.++..+.
T Consensus 181 e~~~~A~y~f~El~~----~~~~t-----------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD----KFGST-----------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp TCCCHHHHHHHHHHC----CS--S-----------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh----ccCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 356777777776333 11222 456778899999999999999999999999999999999999999
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCC
Q 008788 492 MALGEF-EEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 492 ~~lg~~-~~A~~~l~~al~l~P~~ 514 (553)
..+|+. +.+.+.+.+....+|++
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHhCCChhHHHHHHHHHHHhCCCC
Confidence 999888 66777888888888887
No 194
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.38 E-value=0.0006 Score=66.85 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
--.|.-|+|+|.|++||++|.+++..+|.|+-.+-+||.||+++..|..|..++..|+.||-.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 356888999999999999999999999999999999999999999999999999999999853
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.006 Score=59.54 Aligned_cols=120 Identities=15% Similarity=0.052 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
.+.+..+...+..|. .+|.| ..-|.-||..|+.++++..|...|.+|+++.|+|+..+--.|.++
T Consensus 136 ~~~~~l~a~Le~~L~----~nP~d-----------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL 200 (287)
T COG4235 136 QEMEALIARLETHLQ----QNPGD-----------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL 200 (287)
T ss_pred ccHHHHHHHHHHHHH----hCCCC-----------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 335555666666666 68877 557888999999999999999999999999999999999999998
Q ss_pred HHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008788 492 MALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSL 548 (553)
Q Consensus 492 ~~lg---~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (553)
+... .-.+|...|++|+++||+| ..+...|..-. ..+..-++-...+..|++..+
T Consensus 201 ~~~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~a-fe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 201 YYQAGQQMTAKARALLRQALALDPAN-IRALSLLAFAA-FEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCC
Confidence 8764 4678999999999999997 33444443322 222233444556677766654
No 196
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.33 E-value=0.002 Score=72.67 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=90.2
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-- 476 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-- 476 (553)
..++..|.+|-+.|++++|...|+++|+ .+|.+ ..+++|+|..|... +.++|+.++.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D~~n-----------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVK----ADRDN-----------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999 77877 67888888888888 888888888888743
Q ss_pred ------------------CCCCHHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 008788 477 ------------------NPAHVKGLYR--------RG------------MAYMALGEFEEAQRDFEMMMKVDKSSEPDA 518 (553)
Q Consensus 477 ------------------dp~n~ka~~r--------~g------------~a~~~lg~~~~A~~~l~~al~l~P~~~~~~ 518 (553)
+|.+..-+++ ++ .+|...++|++++..|+.+|+++|.|.. +
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~-a 259 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK-A 259 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh-h
Confidence 4555444222 24 7888899999999999999999999854 6
Q ss_pred HHHHHHHHH
Q 008788 519 TAALSKLKK 527 (553)
Q Consensus 519 ~~~l~~l~~ 527 (553)
+..|..|-+
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 666666655
No 197
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.006 Score=59.77 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=88.2
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
+.|.-+.+.+..+....+++.|+....+|+. .+|.. +.+-.-+|..++..|+|..|++.+..+++
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~c-----------vRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKC-----------VRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccc-----------eehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 3455566777777788889999999999988 55544 55667789999999999999999999999
Q ss_pred hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 476 ANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 476 ~dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
-||... ..+-.+..||.++|+.++.+..+.++.+..++.
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 999764 567788999999999999999999999998874
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.0041 Score=60.49 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka---~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~ 516 (553)
...++..|.-++..|+|.+|+..+++++...|...-+ .+.+|.+|+++++|++|+..+++.++++|+|..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 4456788888999999999999999999999987654 599999999999999999999999999999753
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.0058 Score=57.73 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
...++..|..++..|+|.+|+..+++++...|.. .+|++.+|.+++..++|+.|+..|++.++..|++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4567889999999999999999999999988754 68999999999999999999999999999999875
No 200
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.27 E-value=0.0011 Score=69.26 Aligned_cols=108 Identities=20% Similarity=0.281 Sum_probs=90.9
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
..|-.|--.|+-..|+.+..+|+. ..|... -.-..|+|..+++-+-.-+|-...+++|.++-..+-
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~----~~p~~~----------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl 677 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALN----LAPLQQ----------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL 677 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhc----cChhhh----------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch
Confidence 455556678999999999999988 455321 124579999999999999999999999999988899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
.+|-+|.++..|.+.+.|++.|+.|++++|++ ..+.+-|.++
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~-~~~~~~l~~i 719 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTKC-PECENSLKLI 719 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC-hhhHHHHHHH
Confidence 99999999999999999999999999999997 5566655544
No 201
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0026 Score=66.50 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=76.7
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+..-|--++.-+++.+|.+.|.+|.. +++.. ..+|...|..+.-+++.++|+..+..|-++-|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~----lD~~f-----------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATT----LDPTF-----------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhh----cCccc-----------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 355667777777888888888888877 55544 566777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
...-.+.+|.-|.+++++..|.+.|..|+.+.|++ +-+..++..+
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-plv~~Elgvv 423 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-PLVLHELGVV 423 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-chhhhhhhhe
Confidence 77777777777777777777777777777777764 3344444433
No 202
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.21 E-value=0.004 Score=66.06 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=79.6
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
..|-.+-..++|.+|+++|+.|+. +.+++ ..++..+|..+.+|++|+-....-.+.|+++|.+.-
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN-----------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra 144 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALK----IEKDN-----------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA 144 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence 455555567889999999999999 77777 568888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
.|+-.|.++..+|+|..|...++.-.+..
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988877666654
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0036 Score=60.30 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAALSK 524 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~--~~~~~l~~ 524 (553)
.+|.|.-+++.|+|..|...|..=+..-|++ +.|+|++|.+++.+|+|++|...|..+.+-.|++.. ++.--|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999998876 679999999999999999999999999999998753 22222223
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccC
Q 008788 525 LKKQRRKLKVRLENSLKGCLTRSLG 549 (553)
Q Consensus 525 l~~~~~~~~~~~~~~~~~mf~~~~~ 549 (553)
+..++.. ...-+.+|..+-.+.+|
T Consensus 224 ~~~~l~~-~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGN-TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcC-HHHHHHHHHHHHHHCCC
Confidence 3322221 23334555555444443
No 204
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.18 E-value=0.0037 Score=67.55 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=91.4
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
..+..+.+.++-++|..+..+|-. +.+ +.+..|+-+|.++...+++.+|.+.+..|+.+||+++.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~----~~~-----------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASK----IDP-----------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHh----cch-----------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 344444455666777777777665 222 34778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 483 GLYRRGMAYMALGEFEEAQR--DFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~--~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
+.--+|.++.++|+-.-|.+ .+..|+++||.| .+++-.|..+-+++
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKL 767 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc
Confidence 99999999999998888877 999999999998 67888887776554
No 205
>PRK10941 hypothetical protein; Provisional
Probab=97.16 E-value=0.0049 Score=60.47 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.....+.|+=.+|++.++|..|++.++.+|.++|+++--+..||.+|.+++.+..|+.+|+..++.-|+.
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 4467888999999999999999999999999999999999999999999999999999999999999985
No 206
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.15 E-value=0.002 Score=46.25 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~ 489 (553)
.+++.+|..+.++++|.+|.++|+.+|+++|+|..|.--+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 377889999999999999999999999999999887654443
No 207
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.07 E-value=0.0044 Score=68.70 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=63.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~-~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
|--.+..++|++|++.|.++|+.||+|..|++-+|.|+..++. .++|.+.|..|.+++|+| .-+++-|-.+-.+
T Consensus 9 Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn-lLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 9 AKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN-LLAWKGLGNLYER 83 (1238)
T ss_pred HHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh-hHHHHHHHHHHHc
Confidence 3344567899999999999999999999999999999999998 999999999999999997 4566666555443
No 208
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0027 Score=61.28 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=75.6
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
|....+.|..+|+.|+|+.|+++|+.|+.+ .... ..+-+|+|+|+++.++|..|+++....++.-
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGyq-----------pllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhh----cCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 556778999999999999999999999993 2222 3466899999999999999999999988652
Q ss_pred ----CC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 478 ----PA----------------H---------VKGLYRRGMAYMALGEFEEAQRDFE 505 (553)
Q Consensus 478 ----p~----------------n---------~ka~~r~g~a~~~lg~~~~A~~~l~ 505 (553)
|. | ..|+...+-++++.++++.|++.+.
T Consensus 209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 11 1 3567777889999999999998764
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.03 E-value=0.015 Score=50.80 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
..-+++.|...++.++|.+|++.+..+...-|- ...|.+.++.+|+..++|++|+..+++-++|+|.|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 456788999999999999999999999998775 467899999999999999999999999999999975
No 210
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.03 E-value=0.0056 Score=52.33 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008788 447 NLLHLNVAACLLKLG---ECRKSIEACNKVLD-ANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521 (553)
Q Consensus 447 ~~~~~nla~~~~kl~---~~~~A~~~~~~al~-~dp-~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~ 521 (553)
..+.+|+|.|+.+.. +-.+.+..+...++ -.| ..-..+|.+|..|.++++|+.|+.+++..|+.+|+|. .+..+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~-Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR-QALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH-HHHHH
Confidence 467889999998876 46778888888886 334 3567899999999999999999999999999999984 35443
Q ss_pred HHHHHHHH
Q 008788 522 LSKLKKQR 529 (553)
Q Consensus 522 l~~l~~~~ 529 (553)
-+.++.++
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 33343333
No 211
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0034 Score=61.96 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=66.8
Q ss_pred ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008788 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (553)
Q Consensus 408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~ 487 (553)
+..+.+|..|+...+-++. .++||+ ..+..-+|.|++.+|+|++|+..+.-+.+.+..+.+.+.++
T Consensus 32 fls~rDytGAislLefk~~-------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnL 97 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN-------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNL 97 (557)
T ss_pred HHhcccchhHHHHHHHhhc-------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhH
Confidence 4455677777766554443 222222 23445579999999999999999999999988899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 008788 488 GMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 488 g~a~~~lg~~~~A~~~l~~a 507 (553)
|.|++-||.|.+|.....+|
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999876665
No 212
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.95 E-value=0.028 Score=53.38 Aligned_cols=103 Identities=24% Similarity=0.269 Sum_probs=78.0
Q ss_pred hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhh
Q 008788 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-------CRKSIEACNKVLDA 476 (553)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~~~~~al~~ 476 (553)
.+..+-....+++|+..|.-|+-......... ...+.+++.+|.+|..+++ +..|+..+.+|++.
T Consensus 83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 83 KPRDFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33466677889999999999988655433322 1246789999999999998 45566666666655
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 477 dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.. +....+|..|..+.++|++++|+.+|.+++..--.+
T Consensus 155 e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 155 EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 42 236889999999999999999999999999865443
No 213
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.95 E-value=0.0089 Score=61.93 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
++++.|+..+++-.. .+| ....-+|.+++.+++-.+|++..+++|..+|.+...+.-.|..+
T Consensus 183 ~~~~~ai~lle~L~~----~~p--------------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 183 QRYDEAIELLEKLRE----RDP--------------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred ccHHHHHHHHHHHHh----cCC--------------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456667666666444 232 23445788899999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008788 492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVR 535 (553)
Q Consensus 492 ~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (553)
...++|+.|+...++|.++.|++ -..+..|.++--...+.+.+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999996 45777787776666555544
No 214
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.005 Score=65.08 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=88.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
-..+.+.+..+|+..+|..|++.|...+.++.. | ++. ....++..|++.||+++.+.+.|.+++..|-+.|
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D-~~~----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----D-NYS----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc----h-hhh----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 345778999999999999999999999996433 2 111 1236788999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|.++=.-+..-++...-+.-++|+..+.+....
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 999999999999999999999999988877654
No 215
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.90 E-value=0.0025 Score=58.86 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
++.+++-+|..|-.+|-|.-|.-+++++|.+.|..+.++..+|.-+...|+|+.|.+.|...+++||.++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 4678999999999999999999999999999999999999999999999999999999999999999864
No 216
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.90 E-value=0.0017 Score=41.80 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
.+|+++|.+|.+++++++|+.++.++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999964
No 217
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.89 E-value=0.0044 Score=61.82 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=53.2
Q ss_pred HHHHHHHHHHH--cC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 449 LHLNVAACLLK--LG--ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 449 ~~~nla~~~~k--l~--~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+..++|.+|.. .| .+.+|...++......+.+++.+..+|.|++.+|+|++|.+.++.|+..+|++.
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 44555554444 34 699999999998888788999999999999999999999999999999999863
No 218
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0015 Score=61.14 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=56.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+.+++.-+.|..|+..+.+||.++|..+.-|-+++.||+++.+|+.+..+.++|++++|+.
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL 77 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence 4566677899999999999999999999999999999999999999999999999999974
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.86 E-value=0.022 Score=50.93 Aligned_cols=67 Identities=7% Similarity=-0.109 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
...+..|.-++..|++++|...+.-...+||.|.+-++-+|-|+..+++|+.|+..|..|..+++++
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 3455677788899999999999999999999999999999999999999999999999999997764
No 220
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.84 E-value=0.017 Score=61.53 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=94.9
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-------------HHHhhhhh---------HHHHHHHHHHH
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------KVFVGKRN---------LLHLNVAACLL 458 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-------------~~~~~~~~---------~~~~nla~~~~ 458 (553)
+.-.+...+..|+...|.....+|++ .+|.+++-+ +..+.+.. .+|+..+..-.
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 44556667788999999999999988 455544321 11222221 35666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 459 kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
-+++.++|++.|+++|+.-|+..|.|..+|+++.+.++.+.|++.|...++.=|... -.+-.|.+|..+.
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-pLWllLakleEk~ 732 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-PLWLLLAKLEEKD 732 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-hHHHHHHHHHHHh
Confidence 688999999999999999999999999999999999999999999999999999874 3666677666554
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.039 Score=53.78 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=94.4
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH------
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK------ 472 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~------ 472 (553)
+.....+..+...+++.+|...+..|+. ..+.+ ..+..-+|.||+.+|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~-----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQ----AAPEN-----------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 3456778899999999999999999999 45544 34666778888888887554443332
Q ss_pred ----------------------------HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHH
Q 008788 473 ----------------------------VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALS 523 (553)
Q Consensus 473 ----------------------------al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~-~~~~~~~l~ 523 (553)
.+..||++..+-|.+|..+...|++++|.+.|-..++.|-.. +..+++.|-
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 224579999999999999999999999999999999886542 234555555
Q ss_pred HHHHHHH----HHHHHHHHHHHhhc
Q 008788 524 KLKKQRR----KLKVRLENSLKGCL 544 (553)
Q Consensus 524 ~l~~~~~----~~~~~~~~~~~~mf 544 (553)
.+-.... ...+-.|++|+-||
T Consensus 280 e~f~~~g~~Dp~~~~~RRkL~slLy 304 (304)
T COG3118 280 ELFEAFGPADPLVLAYRRKLYSLLY 304 (304)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhhC
Confidence 4433322 34455666666554
No 222
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.027 Score=52.87 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=87.8
Q ss_pred HHhhhcccccc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 401 IRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 401 ~k~~G~~~~~~-g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
+.+.|..+-.. .++++|+..|++|-+++..-.. ...-..|++..|.....+++|.+|++.+.++.+..-+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees---------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES---------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444 6788999999999887653211 1223568888888888899999999999998876544
Q ss_pred C------HHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008788 480 H------VKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSL 540 (553)
Q Consensus 480 n------~ka~-~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (553)
| +|-| +..|.||+-..+.-.|...+++-.+++|... +. ++-+.++..+...+++.-.+|
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~-ds-REckflk~L~~aieE~d~e~f 252 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT-DS-RECKFLKDLLDAIEEQDIEKF 252 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc-cc-HHHHHHHHHHHHHhhhhHHHH
Confidence 4 4554 4558899988999999999999999999852 22 233444444444444443333
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.025 Score=53.98 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=85.8
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCC-------------CChhHHH-----------HHhh--hhhHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-------------QDDEEGK-----------VFVG--KRNLLHLNV 453 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~-------------~~~ee~~-----------~~~~--~~~~~~~nl 453 (553)
.+....+.+...++|.-.+..|++.++.-...+| .|.+..+ .+.. .....+.|.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666777777777777777776663211111 1111000 0111 123467889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+..|+-.++|..|...+++.++.||.++-|..+.|.|++.+|+..+|++.++.++..+|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 224
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.011 Score=58.54 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+.+|-.+...-.|.+||+.+.++|.-+|+....-..+|.||.++.-|+-+.+.+.--|+--|++. +...|+.|
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt--iA~NLkac 227 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST--IAKNLKAC 227 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH--HHHHHHHH
Confidence 34455555666788999999999988887777777889999999999999999998898888863 44444444
No 225
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.018 Score=52.77 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=61.7
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+-.+-++|..+.+.+.++.|+....+||. ++|.. ..++..+|.+|-++.+|++|+.+|.++++.|
T Consensus 134 sIly~Nraaa~iKl~k~e~aI~dcsKaie----l~pty-----------~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 134 SILYSNRAAALIKLRKWESAIEDCSKAIE----LNPTY-----------EKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHhhHh----cCchh-----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 45567899999999999999999999999 77765 5677789999999999999999999999999
Q ss_pred CCCHH
Q 008788 478 PAHVK 482 (553)
Q Consensus 478 p~n~k 482 (553)
|.+-.
T Consensus 199 Ps~~e 203 (271)
T KOG4234|consen 199 PSRRE 203 (271)
T ss_pred cchHH
Confidence 97653
No 226
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.012 Score=59.40 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=60.5
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+.-.|..+|.+++|..|+..-.++|+ .++.+ +..|.--|..++.+++..+|+-+|+.|..+-|.
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~----~~~r~-----------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCID----SEPRN-----------HEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhc----cCccc-----------chHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 344455555666666666666666666 44444 445555566666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
....|--+-.+|...+.+.+|...-+.++++-|.+
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 66666666666666666666666655555555554
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.72 E-value=0.0093 Score=63.80 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=79.6
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|..+..+|+.++|+..|++|+. . ..+ +.++..-+++.++.|++-+.+|++|..++.+.++.+. .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~----~----q~~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-W 337 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIE----S----QSE---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-W 337 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhcc----c----hhh---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-c
Confidence 55778888889999999999999885 1 122 3445577899999999999999999999999998654 5
Q ss_pred HHHHHH--HHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 008788 481 VKGLYR--RGMAYMALGEF-------EEAQRDFEMMMKVD 511 (553)
Q Consensus 481 ~ka~~r--~g~a~~~lg~~-------~~A~~~l~~al~l~ 511 (553)
.+|+|. .|.|+.++++. ++|.+.|.++-.+-
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 676554 58999999999 88888888776654
No 228
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.69 E-value=0.0027 Score=40.34 Aligned_cols=31 Identities=32% Similarity=0.589 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
|+|++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6777777777777777777777777777775
No 229
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.66 E-value=0.002 Score=41.70 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=30.4
Q ss_pred HHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008788 420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468 (553)
Q Consensus 420 ~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~ 468 (553)
+|++||+ ++|.+ ..+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie----~~P~n-----------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE----LNPNN-----------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH----HCCCC-----------HHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999 88988 7899999999999999999863
No 230
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.027 Score=51.53 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=79.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+....+.+..++..+++++|....+.++. .+.| ..+...+-.++|.+++.++++++|+...+..-.-+
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~D-------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~ 156 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALA-----QTKD-------ENLKALAALRLARVQLQQKKADAALKTLDTIKEES 156 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHc-----cchh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 33456778888999999999999999987 3444 22345677899999999999999998776543321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
-..-.--.+|.++...|+-++|+..|.+|+..+++
T Consensus 157 -w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 157 -WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred -HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 11222456899999999999999999999999865
No 231
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.038 Score=58.31 Aligned_cols=127 Identities=14% Similarity=0.225 Sum_probs=87.8
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN----- 477 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d----- 477 (553)
+++-++|+.++.++|+..|+ .+++.+ ..+..-.|+.++++++|++|++.|...++.+
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-------~~~~~~-----------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-------GLDRLD-----------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-------cccccc-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 55666677777777777666 123333 2356667888889999999999998876332
Q ss_pred -------------------------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHH
Q 008788 478 -------------------------P-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-------DKSSEPDATAALSK 524 (553)
Q Consensus 478 -------------------------p-~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-------~P~~~~~~~~~l~~ 524 (553)
| +...-+|+.|.++...|+|.+|++.+++|+++ +-.++.++..+|.-
T Consensus 146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 1 24567999999999999999999999999554 22234567777777
Q ss_pred HHHHHH------HHHHHHHHHHHhhcccc
Q 008788 525 LKKQRR------KLKVRLENSLKGCLTRS 547 (553)
Q Consensus 525 l~~~~~------~~~~~~~~~~~~mf~~~ 547 (553)
|+-++. -+.++....|..+..+.
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 765543 23444556677776553
No 232
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.56 E-value=0.0038 Score=38.57 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+++++|.++..+++++.|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45666777777777777777777777766664
No 233
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.51 E-value=0.038 Score=61.63 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=85.8
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLDANPAH 480 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al~~dp~n 480 (553)
...+.+....++|++|++.-+++++ .+|++ -.++.-+|.++..+++ .++|-.+|-.|.+++|+|
T Consensus 6 LK~Ak~al~nk~YeealEqskkvLk----~dpdN-----------YnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdn 70 (1238)
T KOG1127|consen 6 LKSAKDALRNKEYEEALEQSKKVLK----EDPDN-----------YNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDN 70 (1238)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHh----cCCCc-----------chhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhh
Confidence 3456667788999999999999999 78877 5688889999999998 999999999999999999
Q ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC
Q 008788 481 VKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 481 ~ka~~r~g~a~~~---lg~~~~A~~~l~~al~l~P~~ 514 (553)
.=||-.++..|.. .-+++++-..|.+++.+.|+.
T Consensus 71 lLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 71 LLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107 (1238)
T ss_pred hHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence 9999988888887 456889999999999888874
No 234
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.022 Score=56.12 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
.-|---|.-|+|.++|+.|+..|++.|+.... |+-.|.+||-|++.+|+|..|+.+..+|++++|.+-
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 34445677889999999999999999988643 566799999999999999999999999999999874
No 235
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.41 E-value=0.032 Score=59.52 Aligned_cols=82 Identities=11% Similarity=-0.014 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
...+|+-+|+.+-.+++.+.|...|..-++..|+.+-.|..+++.-...|+.-.|+..|.++..-+|.|. .. .|..+
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-~l--wle~I 760 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-LL--WLESI 760 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-hh--HHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999973 23 34445
Q ss_pred HHHHH
Q 008788 526 KKQRR 530 (553)
Q Consensus 526 ~~~~~ 530 (553)
+-.++
T Consensus 761 r~ElR 765 (913)
T KOG0495|consen 761 RMELR 765 (913)
T ss_pred HHHHH
Confidence 44444
No 236
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.37 E-value=0.16 Score=52.81 Aligned_cols=93 Identities=13% Similarity=0.002 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 008788 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL 494 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~l 494 (553)
.+-...|++|+. .-+.| ..+|++...-..|.+.+.+.-..|.++|...|+|+..|...|.-.+..
T Consensus 88 ~rIv~lyr~at~----rf~~D-----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~ 152 (568)
T KOG2396|consen 88 NRIVFLYRRATN----RFNGD-----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI 152 (568)
T ss_pred HHHHHHHHHHHH----hcCCC-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh
Confidence 344667888887 33444 678888776666777799999999999999999999999999999988
Q ss_pred CC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 495 GE-FEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 495 g~-~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
+. .+.|++.|.++|+.+|++. .++.+.=
T Consensus 153 n~ni~saRalflrgLR~npdsp-~Lw~eyf 181 (568)
T KOG2396|consen 153 NLNIESARALFLRGLRFNPDSP-KLWKEYF 181 (568)
T ss_pred ccchHHHHHHHHHHhhcCCCCh-HHHHHHH
Confidence 76 9999999999999999984 4655443
No 237
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.19 E-value=0.0098 Score=38.93 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
||.++|.+|..+|+|++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999976553
No 238
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.14 E-value=0.0044 Score=63.88 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+-+-|.-+++-+.|+.|+..+.+||+++|+++..+-.|+.|+...++|..|+.|+.+|++++|..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 33556677889999999999999999999999999999999999999999999999999999974
No 239
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.12 E-value=0.045 Score=58.90 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
.+++..+.++...|++++|+++.......-.+....+-.+|.++..+|++++|...|+..++.+|+|. .-...|..+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~-~Yy~~L~~~~ 82 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY-DYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHHHH
Confidence 45566777888999999999999998888888999999999999999999999999999999999974 4555555554
No 240
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.11 E-value=0.2 Score=50.76 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
.+...+......|-.-+-.|+|.+|.+...++-+. .+.. ..+|+--|.+.-.+|++..|-.+..+
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~----~e~p-----------~l~~l~aA~AA~qrgd~~~an~yL~e 143 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH----GEQP-----------VLAYLLAAEAAQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----Ccch-----------HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34556777778888888899999999998886651 1111 22333334444444444444444444
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 473 VLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 473 al~~d-p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
|-+.. .++.-.+..++..+...++++.|+..+..+++..|.+
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~ 186 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH 186 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC
Confidence 44441 1233344444444444444455554444444444444
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.10 E-value=0.084 Score=55.01 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=86.9
Q ss_pred CCCCChhhHHHHHHHHHhhhcc----cc-----ccCCHHHHHHHHHHHHHHhhccCCCCh------hHHHH--Hhhh--h
Q 008788 386 WTGLSFDGIMDEAEKIRVTGNR----LF-----KEGKFELAKAKYEKVLRDFNHVNPQDD------EEGKV--FVGK--R 446 (553)
Q Consensus 386 ~~~~~~~e~~~~a~~~k~~G~~----~~-----~~g~~~~A~~~Y~~Al~~l~~~~~~~~------ee~~~--~~~~--~ 446 (553)
|.+.+...+++.|.+..+.-.. +. ......+|.+.|++|++.-+..-..+. ...+. .++. .
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 4466778888777665443322 21 124478999999999986543211110 01111 1111 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
.-+...+|+|..++|+.++|++.+...++..|. +...++.+-.|+..++.|.++.+.+.+-=.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345578999999999999999999999988764 678999999999999999999999888643
No 242
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.056 Score=57.11 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=81.4
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-H-------------------HHhhhhhHHHHHHHHHHHHc
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-K-------------------VFVGKRNLLHLNVAACLLKL 460 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-~-------------------~~~~~~~~~~~nla~~~~kl 460 (553)
+.-+|..+|+.++|++|+..|+.-++ -+.++.++. . +..+-...+++|.|..++..
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~k----n~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAK----NNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc
Confidence 34578889999999999999998765 222221111 0 00011235789999999999
Q ss_pred CCHHHHHHHHHHHHhhC-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 461 GECRKSIEACNKVLDAN-------PAH--------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 461 ~~~~~A~~~~~~al~~d-------p~n--------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
|+|.+|++...+|+++. -.+ .-....++.++..+|+-++|...|...++.+|.+.
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999999995441 111 23466789999999999999999999999988643
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.06 E-value=0.054 Score=53.98 Aligned_cols=118 Identities=22% Similarity=0.215 Sum_probs=88.7
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC---------CC--Ch-hHHH----------------HHhhhhhH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---------PQ--DD-EEGK----------------VFVGKRNL 448 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~---------~~--~~-ee~~----------------~~~~~~~~ 448 (553)
++....+.|..+|...++++|+..+.+.|.-++... +. .+ -+.+ .--.....
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999999887654321 10 00 0000 01122346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n-----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
++.|++..+-++.+|.+++.+|..-+.+-... ..++.-+|.||..++.|+.|++.|+.|+++.-++
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999998874322 3567789999999999999999999999985543
No 244
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.02 E-value=0.031 Score=54.43 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+.+-+|.|.-..+.|+.++|...+..||+++|.|+.++.+.|....+-++.-+|-.+|-+||.++|.|.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 345567777788899999999999999999999999999999999999999999999999999999974
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.00 E-value=0.27 Score=48.83 Aligned_cols=122 Identities=13% Similarity=-0.007 Sum_probs=88.5
Q ss_pred CCChhhHHHHHHHHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788 388 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (553)
Q Consensus 388 ~~~~~e~~~~a~~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (553)
.+++......+..+.+.|..+++++ +|..|....++|+++++.... .+.......+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3456667778999999999999999 999999999999998755211 11111224556788999999999998876544
Q ss_pred HHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 467 IEACNKVLDA----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 467 ~~~~~~al~~----dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
.+ |.++++. -|+.+-.++-.=.++...++.+++.+.+.+++.--
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 33 5554433 46666666555666666788999999998888753
No 246
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.98 E-value=0.013 Score=37.16 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+++++|.|+.++|++.+|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999999999864
No 247
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.95 E-value=0.013 Score=38.31 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+|.|+|.+|.++|+|++|+.++.++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 248
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.92 E-value=0.013 Score=35.92 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
.+++++|.|+..++++.+|+..+.++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998853
No 249
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.91 E-value=0.014 Score=54.52 Aligned_cols=60 Identities=25% Similarity=0.451 Sum_probs=56.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
...+.++.+.|.+.+++||++-|.+...|||.|.-...-|+++.|.+.|++.|++||.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678999999999999999999999999999999999999999999999999999864
No 250
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.87 E-value=0.081 Score=53.45 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=62.7
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
..-..+..+...|++++|.+.-..+++ ...++ .++.-. -.++.+++..=++..++.++..|+
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk-----~~~D~-----------~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALK-----RQWDP-----------RLCRLI--PRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-----hccCh-----------hHHHHH--hhcCCCCchHHHHHHHHHHHhCCC
Confidence 334556666778889999888888887 12221 111111 123556677777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
++..++.+|..++..+.|.+|...|+.|++..|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 7777777777777777777777777777777766
No 251
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=0.21 Score=51.59 Aligned_cols=124 Identities=19% Similarity=0.146 Sum_probs=95.8
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|.---.++++++|...|.+||. .+..+ +.+++..|.|-+|.++...|....++|+.+-|.-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALd----vd~r~-----------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALD----VDYRN-----------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh----ccccc-----------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 33444444556778888888888888 44444 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR-KLKVRLENSLKGC 543 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~m 543 (553)
-+.||..-..-..||+..-|+..|.+=++..|+.+ ++ +.-++..++ ..-...+..|.+.
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq--aW--~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ--AW--LSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH--HH--HHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999842 33 333333332 2223445566554
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.081 Score=50.09 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=84.3
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH----HHhhC-
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK----VLDAN- 477 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----al~~d- 477 (553)
+++-.....-+.+.|+..|++++.+++.-+. ......++...+..+.+++.|.+|-..+.+ ++..+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 3444444555677777777777775443211 112246777888889999999998877766 33333
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008788 478 -PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR 546 (553)
Q Consensus 478 -p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (553)
+.-.|++.-.-.+|..+.+|..|..+++.+-++.--+.+ ..-+.|.+.+..+++.....+++|.+.
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s---ed~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS---EDSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh---HHHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 444566666666677778999999999998877543322 123445555666666666666666554
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.72 E-value=0.21 Score=47.94 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
-..-+++-|+..+..|+|.+|+..++.+....|. ..++...++.|+++-++|++|+..+.+-+++.|.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 3567889999999999999999999999988764 478999999999999999999999999999999874
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.69 E-value=0.16 Score=46.78 Aligned_cols=94 Identities=31% Similarity=0.541 Sum_probs=69.5
Q ss_pred cccccCCHHHHHHHHHHHHHHhhccCCC-ChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHH
Q 008788 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQ-DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVKGL 484 (553)
Q Consensus 407 ~~~~~g~~~~A~~~Y~~Al~~l~~~~~~-~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-n~ka~ 484 (553)
.++..+++..|+..|.+++. ..+. .. ....+.+++..+...+++..|+..+.+++...+. ...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALE----LDPELNE---------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh----cCCCccc---------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH
Confidence 77788999999999999866 3331 10 1234444444466777888888888888888887 67888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 485 ~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
+.++.++...++++.|+..+..++...|.
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 88888888888888888888888888876
No 255
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.50 E-value=0.2 Score=54.22 Aligned_cols=111 Identities=8% Similarity=-0.057 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhccCCCChhH-------HHHHhhhhhHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhh--C
Q 008788 415 ELAKAKYEKVLRDFNHVNPQDDEE-------GKVFVGKRNLLHLNVAACLLKLG--------ECRKSIEACNKVLDA--N 477 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~~~~~~~~ee-------~~~~~~~~~~~~~nla~~~~kl~--------~~~~A~~~~~~al~~--d 477 (553)
-.|..+|-+|..++....+.+-.. .-.+......+|.-++.||.... +...+.+...+++.+ +
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 478888888888765444322111 11223334456677777776543 234556666666664 7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
+..+.+|.-+|..+...|++++|...|++|+.++|+ ..+...+.++..
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~ 464 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYE 464 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHH
Confidence 888899999999999999999999999999999995 345555555443
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.39 E-value=0.039 Score=54.97 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=80.8
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA--- 479 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~--- 479 (553)
..|+.+...+.|++|++.|++|+++........ +...++..++..+-.++++++|+-+..+|+++-.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l 197 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL 197 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence 478888888999999999999999755432111 22457888999999999999999999999987421
Q ss_pred ---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 480 ---H----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 480 ---n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+ .-++|+++.++..+|+.-+|.++.+.|.+|
T Consensus 198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2 347899999999999999999999999887
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.38 E-value=0.16 Score=46.66 Aligned_cols=102 Identities=30% Similarity=0.406 Sum_probs=81.2
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~al~ 475 (553)
....+...|......+++..|+..+.+++. ..+.+ ......... ++...+++..|+..+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALA----LDPDP-----------DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----CCCCc-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566778888888889999999999988 44433 112223333 88899999999999999999
Q ss_pred hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 476 ANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 476 ~dp---~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+| .....++.++..+...++++.|+..+.+++...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 887 56777888888888999999999999999999987
No 258
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.36 E-value=0.063 Score=48.62 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCC
Q 008788 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE----------FEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 463 ~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~----------~~~A~~~l~~al~l~P~~ 514 (553)
|+.|++.+..+...||.++.+|+|-|-|+.+|.+ +++|+.-|+.||.|+|+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence 7899999999999999999999999999998855 477899999999999985
No 259
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.30 E-value=0.21 Score=40.35 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHH
Q 008788 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLKKQ 528 (553)
Q Consensus 466 A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~-~~~~~~~l~~l~~~ 528 (553)
.+..+.++++.+|++..+.|.+|.++...|++++|++.|-.+++.+++. +..+++.+-.+=..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999875 23455555444333
No 260
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=0.28 Score=47.19 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=41.4
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 450 HLNVAACLLKL----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 450 ~~nla~~~~kl----~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
++.||.+|.++ +++.+|.-.|...-+.-+.++..+...+.|++.+++|++|...++.||.-+++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 33455555553 246666666666666455566777777777777777777777777777766654
No 261
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=95.04 E-value=0.093 Score=54.24 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=79.3
Q ss_pred HHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHH
Q 008788 421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEE 499 (553)
Q Consensus 421 Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~-lg~~~~ 499 (553)
|..||+.++.++.....-........+.+++..|-||+.+++|.+|++.++.+|-.-......+..+..-+-. .+..|.
T Consensus 138 Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eq 217 (404)
T PF10255_consen 138 YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQ 217 (404)
T ss_pred HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHH
Confidence 4455555555544221111122333467889999999999999999999999886543222233344333333 456677
Q ss_pred HHHHHHHHHHhCCCC-hHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccccCCCC
Q 008788 500 AQRDFEMMMKVDKSS-EPDATAALSK-LKKQRRKLKVRLENSLKGCLTRSLGKFL 552 (553)
Q Consensus 500 A~~~l~~al~l~P~~-~~~~~~~l~~-l~~~~~~~~~~~~~~~~~mf~~~~~~~~ 552 (553)
....+--|+.+.|.. +..+...++. ...++.+-.+..-..|..+|....=+|+
T Consensus 218 MyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFI 272 (404)
T PF10255_consen 218 MYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFI 272 (404)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCcc
Confidence 888888899998852 1223333332 2223333333355688899988777765
No 262
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.95 E-value=0.17 Score=59.12 Aligned_cols=100 Identities=16% Similarity=0.061 Sum_probs=64.6
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA--- 479 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~--- 479 (553)
..|..++..|++.+|...|.+|+.......... ....++.++|.+++..|++.+|...+.+++.+-..
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~---------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYH---------YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 445555566777777777777666433222111 11345677888888888888888888888775211
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 480 -----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 480 -----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
..-++..+|.++...|++++|...+.+++.+.
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 12334566777888888888888888887763
No 263
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.14 Score=49.88 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+....|.|-..+|.++|++|++-++.|++..--++-.-|..|.||++.++|+.|++.....++
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456788888889999999999999999999998999999999999999999999987765554
No 264
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=0.77 Score=43.42 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhhcccc-ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 394 IMDEAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~-~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
+.+.|..+..++...| -+++|..|-..|-+|.++.-.....+| ...+|.-.+.||-+ .+..+|+....+
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhD---------aat~YveA~~cykk-~~~~eAv~cL~~ 98 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHD---------AATTYVEAANCYKK-VDPEEAVNCLEK 98 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHhhc-cChHHHHHHHHH
Confidence 3444444444444444 567788888888888775444443332 25678888888855 499999999999
Q ss_pred HHhhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 008788 473 VLDANPA------HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 473 al~~dp~------n~ka~~r~g~a~~~-lg~~~~A~~~l~~al~l~P~ 513 (553)
++++-.+ -++-+..+|..|.. |.+++.|+.+|++|-+.-..
T Consensus 99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 9988543 24455667777775 58999999999999887543
No 265
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.81 E-value=0.14 Score=42.57 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=68.5
Q ss_pred hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHH----HHHcCCHHHHHHHHHHHHhhCCC
Q 008788 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC----LLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~----~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
++..+|.+|++-+|++.-+..+. .+..+...+ .+......++..+|.. -.|..-...+++.+.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHH----HccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 46678999999999999999887 444332111 1111122222222211 01111255688888899999998
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
.+..+|.+|.=+-....|+++..-.+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 88888888888777788888888888888763
No 266
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.76 E-value=0.19 Score=49.08 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...|......+....+.|+.++|...|..|+. +.|.+ ..++..++...-..++.-+|-.+|.+||
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~-----------p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTN-----------PQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCC-----------HHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 34455555667788899999999999999999 78877 4567777777767788889999999999
Q ss_pred hhCCCCHHHHHHHHHHHH
Q 008788 475 DANPAHVKGLYRRGMAYM 492 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~ 492 (553)
.++|.|.+|+.+|+...-
T Consensus 178 tisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 178 TISPGNSEALVNRARTTP 195 (472)
T ss_pred eeCCCchHHHhhhhccch
Confidence 999999999999987543
No 267
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.74 E-value=0.011 Score=58.51 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=54.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
.+..|.+..|+++|..++.++|.++-.|-.|+.++..|++...|++++..|++++|+..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 33568899999999999999999999999999999999999999999999999999753
No 268
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.26 Score=47.80 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
....+..|+=..++..++|..|.....+.|.++|.++-.+-.+|.+|.++|.+.-|+.++...++.-|+.
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 3456778888889999999999999999999999999999999999999999999999999999998874
No 269
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.62 E-value=0.13 Score=54.34 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=87.6
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~ 489 (553)
-+|+..+|+.+|..|+.+... .. ....++.+|..+.++|...+|--....|+.--+.-..-+|.++.
T Consensus 225 ~~G~~~~A~~Ca~~a~hf~~~---h~----------kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~ 291 (886)
T KOG4507|consen 225 IKGEPYQAVECAMRALHFSSR---HN----------KDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN 291 (886)
T ss_pred HcCChhhhhHHHHHHhhhCCc---cc----------ccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence 578999999999999985322 11 13467889999999999888888888888777766667999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 008788 490 AYMALGEFEEAQRDFEMMMKVDKSSEPDA--TAALSKLKKQRRKLKVRLENSLK 541 (553)
Q Consensus 490 a~~~lg~~~~A~~~l~~al~l~P~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~ 541 (553)
++.++++|.....+|..+++++|.....+ ++..-.|..++.+..+|+++..+
T Consensus 292 i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~ 345 (886)
T KOG4507|consen 292 IYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQ 345 (886)
T ss_pred HHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999754322 22233444444444444443333
No 270
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.59 E-value=0.21 Score=38.68 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=53.6
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+....+.|..+|...+.++|+..+++||+- .+..++ +-.++--++.+|..+|+|.+++++..+=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k----~~~~~~--------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEK----ITDRED--------RFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhh----cCChHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778999999999999999999999993 332211 2456667888899999999999998776654
No 271
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.58 E-value=0.3 Score=57.11 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=79.7
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP--- 478 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp--- 478 (553)
...|..++..|++.+|...+.+++.......... ......++.++|.++...|++++|...+.+++.+..
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ-------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 3456677889999999999999998655432111 001133466789999999999999999999987632
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 479 --AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 479 --~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
....++..+|.++...|++++|.+.+.+++.+.+
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2356677789999999999999999999987643
No 272
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.58 E-value=0.18 Score=42.47 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=80.3
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH----HHh
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK----VLD 475 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----al~ 475 (553)
++-..|+..++.+++-.|+-.|++|+...+.+...++.+.+.+--..+..+.|+|.-+..+|+.+-.+++..- ++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999998777644343333334444566788999999999999988888764 556
Q ss_pred hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a-~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+-|.-++. ...+ -..+|--..|+-+| ++-.|+ +.+.+.++.+
T Consensus 83 LiPQCp~~---~C~afi~sLGCCk~ALl~F---~KRHPN--P~iA~~vq~i 125 (140)
T PF10952_consen 83 LIPQCPNT---ECEAFIDSLGCCKKALLDF---MKRHPN--PEIARLVQHI 125 (140)
T ss_pred hccCCCCc---chHHHHHhhhccHHHHHHH---HHhCCC--HHHHHHHHhc
Confidence 66654432 2223 22456555666555 456786 4566665544
No 273
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.54 E-value=0.47 Score=49.18 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=73.0
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+.-.+....++.+...|.+..-.||- .-|.+ .++-..-..-+++++++.|...+.+-|+
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~------------KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKD------------KLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCch------------hHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444555555566666666666666666 33433 1222222334578999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
..|.|.-+|...|..-..||+.+.|++.|.-|++-
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999864
No 274
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.43 E-value=0.11 Score=53.88 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=74.3
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHH-HhhccCCC-C-hhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHVNPQ-D-DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~-~l~~~~~~-~-~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
+-.+.+.|..+|+.+.|..+...|.+||+ .+..+... . .............+++|.+..|+..|++..|.+.+.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 33445899999999999999999999996 43322111 0 000011222335688999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHc
Q 008788 475 DANPAHVKGLYRRGMAYMAL 494 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~l 494 (553)
..-..|+..|.|+|.|.++.
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999998864
No 275
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.39 E-value=0.087 Score=35.15 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+++|+|.+|..+|+|.+|+..+.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888777765
No 276
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.34 E-value=0.98 Score=46.72 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=59.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHH
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS---EPDATAALSKLKKQRR 530 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~---~~~~~~~l~~l~~~~~ 530 (553)
|.-++..|+|.+|.-++.-+.+++| ++.+|.-+|.|++...+|++|..+|... -|++ +..+++++..|.+.+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhhh
Confidence 4556678999999999999999999 9999999999999999999999998754 3321 2346677777776654
Q ss_pred H
Q 008788 531 K 531 (553)
Q Consensus 531 ~ 531 (553)
.
T Consensus 545 k 545 (549)
T PF07079_consen 545 K 545 (549)
T ss_pred h
Confidence 3
No 277
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.26 E-value=0.9 Score=50.63 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=65.8
Q ss_pred cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHH
Q 008788 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-NPAHVKGLYRR 487 (553)
Q Consensus 409 ~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-dp~n~ka~~r~ 487 (553)
...++|..|+....+.++ ..|.. ..+..--|+.+.++|++++|. -|-+++.. -+++--.+--+
T Consensus 20 ld~~qfkkal~~~~kllk----k~Pn~-----------~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLK----KHPNA-----------LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHH
Confidence 345677888877777776 45543 334445677888999999999 55555554 34566667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 488 GMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 488 g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
-.||..++++++|...|++++..+|+
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 88899999999999999999999998
No 278
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.25 E-value=0.29 Score=55.45 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
..|..+..++.+.++++.|...++++++++|++...|..+..+|...|++++|.+.++...+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 467777777888999999999999999999999999999999999999999999999877654
No 279
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=0.84 Score=44.03 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ-RDFEMMMKVDKSS 514 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~-~~l~~al~l~P~~ 514 (553)
..+++-.|.|++.+++|++|......||..+++.+.++-++-.+-..+|.-.++. +.+.+....+|.+
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 3567889999999999999999999999999999999999999999999876666 4556666678876
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.19 E-value=0.33 Score=44.62 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=75.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+.+.|+.+++.|+++.|++.|.++.+++.. .......++++..+.+-.++|..+..+..+|-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456778999999999999999999998885322 12246788888888899999999999999987664
Q ss_pred CC----CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 478 PA----HV--KGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 478 p~----n~--ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
.. .. +.-...|.+++..++|..|-..|-.++.
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 32 12 2233347777788899999888876654
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.06 E-value=0.67 Score=45.55 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=66.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 439 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 439 ~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
...+.+....++..++..+...++++.++.+.++.+.++|-+.++|.++-.+|...|+...|+..|++.-++
T Consensus 145 R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 145 RRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 455667778899999999999999999999999999999999999999999999999999999999988773
No 282
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.05 E-value=0.4 Score=40.25 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=56.2
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
+--....+...|+|++++..-.+||.|++....-++++.+.+ +.+-+++|.++--+|+.++|+..++.+-++
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW----IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW----IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH----HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 334556677889999999999999999998766666666655 567789999999999999999999988654
No 283
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.86 E-value=0.75 Score=45.74 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 413 ~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
..+.|...|.+|++ ..... ..+|...|..-.. .++.+.|...++.+++.-|.+...|.....-+
T Consensus 16 g~~~aR~vF~~a~~----~~~~~-----------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 16 GIEAARKVFKRARK----DKRCT-----------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHC----CCCS------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHc----CCCCC-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 38889999999975 22211 4577777877556 56777799999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 008788 492 MALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 492 ~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
..+++.+.|+..|++++..-|..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCH
T ss_pred HHhCcHHHHHHHHHHHHHhcCch
Confidence 99999999999999999987764
No 284
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.78 E-value=0.34 Score=47.17 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 433 PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 433 ~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
++-+++.+-+..+...++.-.|..|+..+.+.+|+.+|++++.+||-+...++-+-..+..+|+--.|...|++..
T Consensus 265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556667777778888889999999999999999999999999999999999999999999888888877653
No 285
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.38 E-value=0.21 Score=42.98 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~ 487 (553)
..|.+.+|..|.++++|+.++++++..|+.+|+|..|.-..
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 45778899999999999999999999999999998775443
No 286
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.34 E-value=1.9 Score=50.88 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
|+.+..+|.+.+++++|.+.+...++.. +.+...|..+..+|.+.|++++|++.|+...
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344444444444444444444444332 1234444444455555555555555554443
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=2.8 Score=40.09 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=65.1
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN----- 477 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d----- 477 (553)
.-++.+-..++|++|..+..+|++..+.-.... .-+..|-..++..-.+..|.++..++++|..+-
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 334444466888888888888887544321111 124566677777778889999999999988773
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|+-+..-..+|--..+-.+.++|+..|++++.+
T Consensus 107 pdtAAmaleKAak~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 107 PDTAAMALEKAAKALENVKPDDALQLYQRALAV 139 (308)
T ss_pred cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 333333333333344556788999999998887
No 288
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.03 E-value=0.36 Score=49.07 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=77.7
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-- 477 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-- 477 (553)
.+.+.|..+...|++..|+++|.+|-+++... +..+..+.|+-.+-+-+++|.....+.++|...-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 35577888888999999999999988876542 1235678888888888999999999999988761
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 478 ------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 478 ------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
.-.+++....|.|++.+++|..|.++|-.+-
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1245677788999999999999999887653
No 289
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=1.6 Score=43.55 Aligned_cols=104 Identities=19% Similarity=0.160 Sum_probs=60.1
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh----------------h-----HHHHHhh------hhhHHHH
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------E-----EGKVFVG------KRNLLHL 451 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~----------------e-----e~~~~~~------~~~~~~~ 451 (553)
+.+-..+..++.+|++.+|...+.+.|+. .|.+- + -.+++.. ...-++-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d----~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDD----YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHh----CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 44556677788999999999999998873 23220 0 0000000 0011122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
-+|.|+...|-|.+|.+.+++++++|+.+.-|....+.++...+++.++++...+
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 3455666666666666666666666666666666666666666666666665543
No 290
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.88 E-value=0.19 Score=33.26 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
.+|.++|.+.+...+|+.|+.+|++||++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468889999999999999999999998763
No 291
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.80 E-value=0.14 Score=52.96 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=78.6
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC--
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-AN-- 477 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-~d-- 477 (553)
+.-+.+..|-.|+|..|.+.....-. ...+.. ...-+-....+++|++..++.++.|..++.++.+||+ .+
T Consensus 243 l~LKsq~eY~~gn~~kA~KlL~~sni---~~~~g~---~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 243 LLLKSQLEYAHGNHPKAMKLLLVSNI---HKEAGG---TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhccc---ccccCc---cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666655443211 011110 0000111234578999999999999999999999996 21
Q ss_pred ---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 478 ---------------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 478 ---------------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
......+|+.|..|.+.|+.-.|.++|.+|.+.--.| +.+|-.|..|
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAEc 378 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAEC 378 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 1245679999999999999999999999999986665 3365555544
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.73 E-value=0.91 Score=46.38 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=78.1
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHH-Hhhcc-CCCChh-----------------HHHHHhhhhhHHHHHHHHHHHHc-
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV-NPQDDE-----------------EGKVFVGKRNLLHLNVAACLLKL- 460 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~-~l~~~-~~~~~e-----------------e~~~~~~~~~~~~~nla~~~~kl- 460 (553)
..+.++.+..+|+..+|+...+..+. .+... .+.... ...........+++-+|.-...+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~ 266 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY 266 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 33556666677777888888888777 33321 000000 01122334456777777776677
Q ss_pred -----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008788 461 -----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-----------------EEAQRDFEMMMKVDKS 513 (553)
Q Consensus 461 -----~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~-----------------~~A~~~l~~al~l~P~ 513 (553)
+.+++++..+..|+.++|.+.++|+..|..+..+=+. ..|+..|-+|+.+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8899999999999999999999999999988775332 3478888888888876
No 293
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.72 E-value=1.9 Score=50.88 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
.|+.+-.+|.+.|++++|++.++...+.+ +.+...|..+..+|.+.|++++|++.|+...+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 55666666777777777777777777665 345566666677777777777777777766654
No 294
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=92.57 E-value=1.3 Score=46.24 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--C-----HHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--E-----CRKSI 467 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~-----~~~A~ 467 (553)
+.......+.|-.+|..|+|.+|+..|+..|..+.-+.-.+.+|..+++++...|.-.+-.+.+.+. . .++..
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 3444455667999999999999999999999876655555555556666665554333322222221 1 22333
Q ss_pred HHHHHHHhh-----CCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 468 EACNKVLDA-----NPAHVKGLYRRG-MAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 468 ~~~~~al~~-----dp~n~ka~~r~g-~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+.+..|.-. .|.+.-.-.|.| ...+++++|.-|...-++.|++.|..
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 444444432 232222223333 34557899999999999999999985
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.46 E-value=0.3 Score=32.45 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+.++..+|.+|..+|+|++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999875
No 296
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.10 E-value=0.73 Score=37.44 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=42.6
Q ss_pred cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 409 ~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
.+.++|..|++.+.+..++......... ......+.+|+|.++...|++++|+..+++|+++-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4679999999999998885332211110 11223456778888888888888888888887663
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.04 E-value=5 Score=39.78 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=71.8
Q ss_pred ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CC---C
Q 008788 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA----NP---A 479 (553)
Q Consensus 408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~----dp---~ 479 (553)
..++|+++.|...|.|+=..+....|.. ....+..++|.|...++.+ ++++|+...++|+++ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHH-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 3578999999999999977654444433 2234678999999999999 999999999999988 21 1
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCC
Q 008788 480 -------HVKGLYRRGMAYMALGEFEEAQR---DFEMMMKVDKS 513 (553)
Q Consensus 480 -------n~ka~~r~g~a~~~lg~~~~A~~---~l~~al~l~P~ 513 (553)
..+.+.-++.+|...+.++...+ .++.+-+-.|+
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN 119 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC
Confidence 24567778999999888765444 33334333454
No 298
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.98 E-value=0.75 Score=37.38 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=46.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC----CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 457 LLKLGECRKSIEACNKVLDANP----AH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~dp----~n-----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.++.++|.+|++...+.++.-. .. .-|+..+|..+..+|++++|+..++.|+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4578999999888888776632 12 467889999999999999999999999998554
No 299
>PLN03077 Protein ECB2; Provisional
Probab=91.70 E-value=2.4 Score=49.28 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
.+|..+-.++...++.+.+...++++++++|++...|..++.+|...|+|++|.+..+...+
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 34444444455678888888889999999999999999999999999999999988876654
No 300
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=91.66 E-value=1.7 Score=41.45 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=71.1
Q ss_pred ccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH-HH-HHHHHHHHhh--CCCCHHH
Q 008788 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR-KS-IEACNKVLDA--NPAHVKG 483 (553)
Q Consensus 408 ~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~-~A-~~~~~~al~~--dp~n~ka 483 (553)
+|..|+|+.|++.-.-||+.=. .-|+. -........+.-..+.|....+.|+.- -. ...+..+..- -|+.+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l-~~Pd~--f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGL-TMPDQ--FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCC-CCCcc--ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 4567999999999999988311 11211 001122223344556666666777521 11 1122222111 1455555
Q ss_pred HHH--HHHHHH---------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 008788 484 LYR--RGMAYM---------ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL 532 (553)
Q Consensus 484 ~~r--~g~a~~---------~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~ 532 (553)
-+. .|.++. ..++...|+..|++|++++|+ ..+++.+++|.++++..
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k--~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK--CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHhhc
Confidence 444 455552 345788999999999999997 46888899998888743
No 301
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=3.1 Score=43.45 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=72.9
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL-DA 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al-~~ 476 (553)
+....-.|-....-+.|+.|...|..|.+..+. +++.+.+..|+|..|++.++-.. +.+++ .+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALDLI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHHhc
Confidence 444556677777778889999999988884332 23457789999999999776443 22333 23
Q ss_pred CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 477 NPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 477 dp~n----------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
.|.| ..++|-.|.-.+..+++.||+..+++.|+..
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4442 4578999999999999999999999999987
No 302
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.09 E-value=1 Score=39.65 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=50.9
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
....+...+..+...|++.+|+..+++++. .+|.+ ..+|..+-.||..+|++.+|++.|.+.-
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~----~dP~~-----------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALA----LDPYD-----------EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455667777788899999999999999999 78877 4578888999999999999999988754
No 303
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.02 E-value=1.6 Score=48.79 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=82.1
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
-.|-.+++.|++++|..+ -+|+. ...+.+ ...+--+-.||..++++++|...+.+++..+|+ .+
T Consensus 48 LkaLsl~r~gk~~ea~~~-Le~~~---~~~~~D-----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-ee 111 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKL-LEALY---GLKGTD-----------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EE 111 (932)
T ss_pred HHHHHHHHhcCchhHHHH-Hhhhc---cCCCCc-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HH
Confidence 345667788888888833 33343 233333 234556788999999999999999999999998 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR 530 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (553)
.++.+=.||.+-++|.+-.+.--+..+.-|++.--.+..+..+-+-+.
T Consensus 112 ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhcc
Confidence 999999999999999877666666666778875555665555554443
No 304
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.91 E-value=2.2 Score=44.87 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=73.2
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-NPA 479 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-dp~ 479 (553)
.+..+.++.+.|+.++|++.|+.-++. .|..+ ...++.|+..|++.++.|.++-....+-=++ -|.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke----~p~~~---------~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKE----FPNLD---------NLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhh----CCccc---------hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 456778888999999999999998873 33221 1458999999999999999988887775333 256
Q ss_pred CHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCC
Q 008788 480 HVKGLYRRGMAYMA-LGE---------------FEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 480 n~ka~~r~g~a~~~-lg~---------------~~~A~~~l~~al~l~P~~ 514 (553)
.+...|..|....+ .++ -..|++.+.+|.+.+|..
T Consensus 329 SAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 329 SATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 66666666554433 121 234778899999999974
No 305
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=90.55 E-value=2.4 Score=48.00 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=51.8
Q ss_pred hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Q 008788 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKG 483 (553)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka 483 (553)
-+.|.+.|++++|...|++. ...+ ...|+.+..+|.+.|++++|+..+++..+.. .-+...
T Consensus 266 i~~y~k~g~~~~A~~vf~~m-------~~~~-----------~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGM-------PEKT-----------TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhC-------CCCC-----------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 34556778888887777642 1112 3456666666666666666666666654432 124445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 484 LYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 484 ~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|..+..++.++|++++|.+.+..+++.
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 566666666666666666666666554
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.55 E-value=3.2 Score=33.40 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcC
Q 008788 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALG 495 (553)
Q Consensus 418 ~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n--~ka~~r~g~a~~~lg 495 (553)
+...++++. .+|.+ ..+.+.+|.+++..|++++|++.+-.++..++++ -.+--.+-.++..+|
T Consensus 8 ~~al~~~~a----~~P~D-----------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 8 IAALEAALA----ANPDD-----------LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 445666676 67777 5788999999999999999999999999999866 333333334444444
Q ss_pred C
Q 008788 496 E 496 (553)
Q Consensus 496 ~ 496 (553)
.
T Consensus 73 ~ 73 (90)
T PF14561_consen 73 P 73 (90)
T ss_dssp T
T ss_pred C
Confidence 4
No 307
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.48 E-value=2.4 Score=45.68 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+.++.|.|.-++++++|..+++.|...|..-| ..+|....++.||..|.+.|.|++.++.|-+.+|.+
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 456778999999999999999999999997754 347888889999999999999999999999999986
No 308
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.42 E-value=4 Score=43.81 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.-.++..|..+...++.++|++.+++++..... ..=++|.+|-++..+.+|++|..+|.+.++.+.-
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 446778899999999999999999999964332 2346899999999999999999999999987654
No 309
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.41 E-value=5.3 Score=47.03 Aligned_cols=66 Identities=15% Similarity=0.011 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
..|..|+-.|.+-+.+++|.+.++.-++.--...+.|.+.|..+++.++-++|+..+++||+--|.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 356667888888889999999999888877778899999999999999999999999999999887
No 310
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.30 E-value=3.5 Score=42.55 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHH--HhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------
Q 008788 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKV--FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA------------ 476 (553)
Q Consensus 411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~--~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------ 476 (553)
...|.++...|..|+... +|.. -... ....-+..++.++.++..+|++..|.+.+++||-.
T Consensus 7 s~~Y~~~q~~F~~~v~~~---Dp~~--l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~ 81 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSH---DPNA--LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF 81 (360)
T ss_pred CHHHHHHHHHHHHHHHcc---CHHH--HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456777888888777621 1110 0001 11112678899999999999999999999998821
Q ss_pred --C------------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788 477 --N------------PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (553)
Q Consensus 477 --d------------p~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~ 516 (553)
+ +.| ..|+||....+.+.|-|.-|++..+-.+.|||.+++
T Consensus 82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 1 112 468999999999999999999999999999999443
No 311
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.06 E-value=7.4 Score=41.69 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=72.7
Q ss_pred CchhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhcc
Q 008788 328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNR 407 (553)
Q Consensus 328 ~v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~ 407 (553)
+.-..|..++..|.++....+.+..-| ..+..++.|...+..|..
T Consensus 256 qaq~~F~~av~~~d~n~v~~lL~ssPY-----------------------------------HvdsLLqva~~~r~qgD~ 300 (665)
T KOG2422|consen 256 QAQRDFYLAVIVHDPNNVLILLISSPY-----------------------------------HVDSLLQVADIFRFQGDR 300 (665)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccCCc-----------------------------------chhHHHHHHHHHHHhcch
Confidence 356788889999988888877764322 234456777777777777
Q ss_pred ccccCCHHHHHHHHHHHHHHhhcc------CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Q 008788 408 LFKEGKFELAKAKYEKVLRDFNHV------NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-H 480 (553)
Q Consensus 408 ~~~~g~~~~A~~~Y~~Al~~l~~~------~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-n 480 (553)
-..++-.++|+-.+.+|+.-.=.. -|....+...+ .. +++..-..+.+.|+|.-|.++|...+.+||. +
T Consensus 301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~F---yL-~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eD 376 (665)
T KOG2422|consen 301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQF---YL-ALFRYMQSLAQRGCWRTALEWCKLLLSLDPSED 376 (665)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHH---HH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCC
Confidence 776677777777777776521000 01111122221 12 2222333445789999999999999999997 5
Q ss_pred HH
Q 008788 481 VK 482 (553)
Q Consensus 481 ~k 482 (553)
+-
T Consensus 377 Pl 378 (665)
T KOG2422|consen 377 PL 378 (665)
T ss_pred ch
Confidence 43
No 312
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.00 E-value=1.3 Score=43.99 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHH
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLY 485 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~----n~ka~~ 485 (553)
..|-|.+|.+.-++|++ +++.+ .-+....|.++-..++++++.++..+--..... ...-|.
T Consensus 187 E~g~y~dAEk~A~ralq----iN~~D-----------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW 251 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQ----INRFD-----------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW 251 (491)
T ss_pred HhccchhHHHHHHhhcc----CCCcc-----------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence 34667777777777776 55554 344556677777789999999988765444321 234577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HhCCC
Q 008788 486 RRGMAYMALGEFEEAQRDFEMMM--KVDKS 513 (553)
Q Consensus 486 r~g~a~~~lg~~~~A~~~l~~al--~l~P~ 513 (553)
.-|.+|.+-++|+.|++.|.+-+ +++.+
T Consensus 252 H~Al~~iE~aeye~aleIyD~ei~k~l~k~ 281 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDREIWKRLEKD 281 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhcc
Confidence 78999999999999999997654 34443
No 313
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=89.93 E-value=9.1 Score=35.19 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=67.7
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...++.+|..+++..|....++..+ .+|... ...-.+.+|..+.-+|++.+|...++.++..-| .
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r---------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g 192 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFR---------SPDGHLLFARTLAAQGKYADAESAFEVAISYYP-G 192 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhh----cCCccC---------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-C
Confidence 45666777777777777777666555 344220 022345567778889999999999999999988 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~a 507 (553)
+.+..+.+.-+..+|+.++|.+-+...
T Consensus 193 ~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 193 PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677777889999999888887666544
No 314
>PRK10941 hypothetical protein; Provisional
Probab=89.76 E-value=2.5 Score=41.57 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=64.3
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
.-+.+.-..+.+.++|..|+++-++.+. +.|++. .-+.-+|.+|.+++++..|+.+++.-++..|
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp-----------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQ----FDPEDP-----------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCH-----------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3445666677899999999999999998 788773 3345689999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 008788 479 AHVKGLYRRGMAY 491 (553)
Q Consensus 479 ~n~ka~~r~g~a~ 491 (553)
+.+.+-.-+.+..
T Consensus 247 ~dp~a~~ik~ql~ 259 (269)
T PRK10941 247 EDPISEMIRAQIH 259 (269)
T ss_pred CchhHHHHHHHHH
Confidence 9988876665544
No 315
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.72 E-value=1.6 Score=33.78 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=30.8
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~ 431 (553)
+.|..+-.++..+=+.|+|.+|+.+|++|++.|...
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 456777788899999999999999999999987653
No 316
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.63 E-value=6.3 Score=39.98 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008788 419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (553)
Q Consensus 419 ~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~ 497 (553)
..|++.++ .+|.+-+.+-.+..+.-.+...... --....-.+..+..+.+||+.+|++.+.+..+-.+..++.+-
T Consensus 6 ~el~~~v~----~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 6 AELNRRVR----ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHH----hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 34666676 6787754443332222222110000 001112256677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc
Q 008788 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL-KVRLENSLKGCLTRS 547 (553)
Q Consensus 498 ~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~mf~~~ 547 (553)
+...+-+++++..+|++..-....|..+....... -..-+++|.+++..+
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 99999999999999987432233333333322211 234455666655543
No 317
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.53 E-value=0.69 Score=43.57 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=52.1
Q ss_pred cccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 407 ~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
.+++.++...|.+.|.+|+. +-|.. ..-|+.++....|.+++..|.+.+.++|++||.+
T Consensus 4 ~~~~~~D~~aaaely~qal~----lap~w-----------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE----LAPEW-----------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhh----cCchh-----------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45678999999999999999 66654 5678999999999999999999999999999865
No 318
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.40 E-value=0.88 Score=44.76 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r-~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~ 520 (553)
..+|...+....+.+.|.+.-..|.++|...|.|+..|.. .+.-+...++++.|++.|.++|+++|++. .++-
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p-~iw~ 180 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP-RIWI 180 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc-hHHH
Confidence 4677777777778889999999999999999999999877 56667788999999999999999999974 3543
No 319
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.04 E-value=4.5 Score=41.24 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=77.0
Q ss_pred cccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008788 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 486 (553)
Q Consensus 407 ~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r 486 (553)
..+..|+|+.|++..+....... +.+ + ..+..+..++...|+..+. -+...|..+..+++++.|+.+-+-.-
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~v-ie~-~-----~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKV-IEK-D-----VAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHh-hch-h-----hHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHH
Confidence 44567888888888776554211 111 1 1122234455555544433 46899999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 487 ~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
-+.++++-|+..++-..++.+-+.+|+ +++.....
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~lY~ 303 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPH--PDIALLYV 303 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCC--hHHHHHHH
Confidence 999999999999999999999999997 34554433
No 320
>PLN03077 Protein ECB2; Provisional
Probab=88.77 E-value=3.7 Score=47.73 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=20.6
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHH
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLR 426 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~ 426 (553)
+......+.+.|+.++|+..|++..+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777888999999999998665
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.68 E-value=7.7 Score=35.87 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhh-hH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHH-
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKR-NL-----LHLNVAACLLKLGECRKSIEACNKVLDANP-AHVKG- 483 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~-~~-----~~~nla~~~~kl~~~~~A~~~~~~al~~dp-~n~ka- 483 (553)
.+..+|-..|.++++.+..-.|....+-+.+.... .. ..+-+|..+...+++++|+...+.+|..-. .+.++
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 44568888999999877655553332222222222 22 234567777888999999999999995532 35554
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 484 -LYRRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 484 -~~r~g~a~~~lg~~~~A~~~l~~a 507 (553)
-.|+|.+...++.+++|+..+...
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 568899999999999999988754
No 322
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.48 E-value=1.6 Score=28.54 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008788 482 KGLYRRGMAYMALGEFEEAQRD--FEMMMKVDKSS 514 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~--l~~al~l~P~~ 514 (553)
+.+|-.|..+...|+|++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567777777888888888888 44777777653
No 323
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.47 E-value=5.2 Score=35.84 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
...+-.--|..++..++|.+|+..++.+.+-.|..+-+--.++.|+..+++.+-=. +-..+++-.++ +++....+.+
T Consensus 43 ~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~~d--~~a~~Lv~~L 119 (160)
T PF09613_consen 43 FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRR-YADEVLESGAD--PDARALVRAL 119 (160)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcCCC--hHHHHHHHHH
Confidence 34455666777778888888888888877777777655556677777777764322 23345555544 3455555444
Q ss_pred HHH
Q 008788 526 KKQ 528 (553)
Q Consensus 526 ~~~ 528 (553)
..+
T Consensus 120 l~~ 122 (160)
T PF09613_consen 120 LAR 122 (160)
T ss_pred HHh
Confidence 433
No 324
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=2.4 Score=47.26 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-----cC--CHHHH-
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-----LG--ECRKS- 466 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-----l~--~~~~A- 466 (553)
+....+..+.|-.++..|+|.+|+++|+.+|-.+.-+--++.++....+++...+.-.+.-..+. ++ ...++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 55677778999999999999999999999887544333344444444444444442222211111 11 23333
Q ss_pred -HHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 467 -IEACNKVLDANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 467 -~~~~~~al~~dp~-n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+..|=.-..+.|- ..-|+...-.+++++++|..|...-++.|++.|.-
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 1111111233443 33455555678889999999999999999999974
No 325
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.15 E-value=1.5 Score=34.21 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=29.2
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
.|..+-.+|..+=+.|+|.+|+.+|.+||++|..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4566677888888999999999999999998765
No 326
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.12 E-value=13 Score=38.32 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDAT 519 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----dp~n~ka~~r~g~a~~~---lg~~~~A~~~l~~al~l~P~~~~~~~ 519 (553)
..+..|+=++|...++|+.-++..+..-.+ -++....-+..|.|+.+ -|+.++|+..+..++.-+..+.+++.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 456678888899999999988888776666 34566677888888888 89999999999997766655556666
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHhhcccccCCC
Q 008788 520 AALSKLKKQRR--------KLKVRLENSLKGCLTRSLGKF 551 (553)
Q Consensus 520 ~~l~~l~~~~~--------~~~~~~~~~~~~mf~~~~~~~ 551 (553)
-.+.++-+.+- +...+.-..|++-|...++.|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 66666555442 223344567777777665443
No 327
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.12 E-value=9.4 Score=38.79 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=81.7
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...+..+.+.|++..|.....++.......... ...+.+-.|..+...|+..+|+......+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566777888888999999999888877632111110 1344555666677788888888887777761
Q ss_pred -C---------------------------------CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChH
Q 008788 477 -N---------------------------------PAHVKGLYRRGMAYMAL------GEFEEAQRDFEMMMKVDKSSEP 516 (553)
Q Consensus 477 -d---------------------------------p~n~ka~~r~g~a~~~l------g~~~~A~~~l~~al~l~P~~~~ 516 (553)
. ...+++++.+|.....+ +.++++...|+.|.+++|++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 214 RLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 0 11256788888888888 8999999999999999998754
Q ss_pred HHHHHHHHH
Q 008788 517 DATAALSKL 525 (553)
Q Consensus 517 ~~~~~l~~l 525 (553)
+...+...
T Consensus 294 -~~~~~a~~ 301 (352)
T PF02259_consen 294 -AWHSWALF 301 (352)
T ss_pred -HHHHHHHH
Confidence 44434433
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.78 E-value=2.1 Score=29.36 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 485 YRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 485 ~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+.+|.+|..+|+++.|++.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6789999999999999999998884
No 329
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.43 E-value=3.5 Score=39.11 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=52.1
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..|..++..++..-...-+..|+..|.+|+..-. .|... .....+.+-+|..+.++|++++|++.+.+++.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~--~~~~~-------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENED--FPIEG-------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc--CCCCC-------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3444555555544444445666666766665211 11110 00145777899999999999999999999998
Q ss_pred hCCCCH-HHHHHHHH
Q 008788 476 ANPAHV-KGLYRRGM 489 (553)
Q Consensus 476 ~dp~n~-ka~~r~g~ 489 (553)
.-..+. ..+..+|+
T Consensus 194 ~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 194 SKKASKEPKLKDMAR 208 (214)
T ss_pred CCCCCCcHHHHHHHH
Confidence 754333 35555554
No 330
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.38 E-value=10 Score=36.74 Aligned_cols=115 Identities=20% Similarity=0.278 Sum_probs=59.9
Q ss_pred ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (553)
Q Consensus 390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (553)
++.-++-.|+...-.||.+-..-+...-...-++.++.++.. ...+..-..+++......+.++.|++-+++|.-.+..
T Consensus 121 PFsmR~lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~-~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 121 PFSMRILHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQG-LAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence 444455556666555555443333333333333434333221 1111112233344445566677778788888888888
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 470 CNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFE 505 (553)
Q Consensus 470 ~~~al~~dp-~n~ka~~r~g~a~~~lg~~~~A~~~l~ 505 (553)
++++++.+| ..+...-.+|...++.|+.+.|...|+
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 888887773 344444445555555555555555554
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.21 E-value=0.88 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFE 505 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~ 505 (553)
+++.+|.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666666666666666666554
No 332
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=86.55 E-value=4.5 Score=47.56 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=72.0
Q ss_pred hhhHHHHHHH---HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788 391 FDGIMDEAEK---IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (553)
Q Consensus 391 ~~e~~~~a~~---~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (553)
++...+.+.. +......|-+-.++++|.+.|+.-++-+.. . ...|..++..+++..+-++|.
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q----~-----------~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ----T-----------RKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc----h-----------hhHHHHHHHHHhcccHHHHHH
Confidence 4455555553 445566667778888888888887774431 1 456666677777777777777
Q ss_pred HHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 468 EACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 468 ~~~~~al~~dp~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
....+||..-|. +....-.-|+.-++.|+-+.++..|+-.|.-+|.
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 777777777665 5556666666677777777777777777777765
No 333
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.37 E-value=9 Score=42.67 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=89.7
Q ss_pred CChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC---CCCh--------hHHHHHhhhhhHHHHHHHHHH
Q 008788 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDD--------EEGKVFVGKRNLLHLNVAACL 457 (553)
Q Consensus 389 ~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~---~~~~--------ee~~~~~~~~~~~~~nla~~~ 457 (553)
++.++.. +-.+.--|-.....+...+|.+.+.+|++.++... +... +.......+...++...+.|.
T Consensus 294 l~~~~l~--~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 294 LPKEELY--ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred cCHHHHH--HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555553 33344457777777777799999999999887654 1110 112233444566788889999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCCh
Q 008788 458 LKLGECRKSIEACNKVLDANP---------AHVKGLYRRGMAYMALGEFEEAQRDFE--------MMMKVDKSSE 515 (553)
Q Consensus 458 ~kl~~~~~A~~~~~~al~~dp---------~n~ka~~r~g~a~~~lg~~~~A~~~l~--------~al~l~P~~~ 515 (553)
+-+++|..|......+..... -.+-.+|-.|..+...|+.+.|+..|. .+....+.++
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 999999999998887776532 247789999999999999999999998 5555566554
No 334
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.06 E-value=25 Score=31.53 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
+..+..+..+-++.++..++...+.-+--+.|+++..-.--|..|...|+|.+|+..|+.+..-.|.. +-++..+..|.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL 88 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHH
Confidence 45566777777788888888888888888889999999999999999999999999999877777764 55666666665
Q ss_pred HHH
Q 008788 527 KQR 529 (553)
Q Consensus 527 ~~~ 529 (553)
...
T Consensus 89 ~~~ 91 (160)
T PF09613_consen 89 YAL 91 (160)
T ss_pred HHc
Confidence 543
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=86.04 E-value=7.3 Score=43.46 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLD---------------------ANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~---------------------~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
.+|.-.|+..-..|+.+.|+.+|..|-. ....+..|-|.+|+-|...|++.+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5666678777788998888888887652 2356778999999999999999999999988
Q ss_pred HHHh
Q 008788 507 MMKV 510 (553)
Q Consensus 507 al~l 510 (553)
|-.+
T Consensus 993 Aqaf 996 (1416)
T KOG3617|consen 993 AQAF 996 (1416)
T ss_pred HHHH
Confidence 7543
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=8 Score=43.21 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=28.6
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~ 429 (553)
++.++..|+.+|++|+|++|...|-++|.+++
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 56688999999999999999999999988654
No 337
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=85.90 E-value=2.5 Score=32.73 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
+..|..+..+|...=+.|+|.+|+.+|..||+.|..
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345666677778888889999999999999998765
No 338
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.69 E-value=2.6 Score=32.70 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
+..|..+..+|...=..|+|++|+.+|..||++|..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 455677778888888999999999999999998765
No 339
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.38 E-value=6.6 Score=45.47 Aligned_cols=100 Identities=13% Similarity=0.217 Sum_probs=68.7
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-------CCHHHHHHHHHHHHh
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSIEACNKVLD 475 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-------~~~~~A~~~~~~al~ 475 (553)
.-.+.+...+.|++|+..|++... .-|+..|-. .+.+.+|...+.. ..+.+|+.-+++.-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 546 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRE----SFPGRKEGY--------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH- 546 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhh----cCCCcccch--------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-
Confidence 445556667788889988888776 455543322 2344444444432 24666666665533
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
--|.-+=-|.-.|.+|.++++|++-+++|..|++--|++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 2355666788888999999999999999999999999873
No 340
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.30 E-value=12 Score=40.17 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=81.4
Q ss_pred Hhhhccccc---cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 008788 402 RVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-- 476 (553)
Q Consensus 402 k~~G~~~~~---~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-- 476 (553)
.+.|+.+|+ ...|++|.+.|.-|....+ |.+--..-+-...-+..++.+|......|+.+.|.....++|-.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d---~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHD---PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcC---CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 467777774 5678999999888877422 11100000001112567788898888999988888877777611
Q ss_pred -------------------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Q 008788 477 -------------------NPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-SEPDATAALSK 524 (553)
Q Consensus 477 -------------------dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~-~~~~~~~~l~~ 524 (553)
.|.| ..|+||.-+-+.+.|-|.-|.++.+..++|+|. +.-.+.-.+..
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~ 386 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI 386 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH
Confidence 1333 568889899999999999999999999999998 43334444443
No 341
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=84.72 E-value=3.5 Score=31.81 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
..|..+-..|...=+.|+|++|+.+|..|++.|..
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45556667777777889999999999999998765
No 342
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=84.38 E-value=5.2 Score=38.58 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=74.2
Q ss_pred hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C-
Q 008788 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---H- 480 (553)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n- 480 (553)
+..++..++.-.|+..|...+. ..|.+--....-......+|.....|+.. -....|.++++.||-.-.. .
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~----~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~-~~~~n~~e~~d~ALm~Ae~r~D~~ 76 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILK----GSPTNLTALIFKAACLEKLYFGFSDWHSD-ATMENAKELLDKALMTAEGRGDRS 76 (368)
T ss_pred ccchhcccchHHHhhhhhhhhc----cCCcceeEEeehhhhHHHHHhhhhhhhcc-cChhhHHHHHHHHHHhhhccCCcc
Confidence 3456666667777888877665 33332100000000112344455555532 3467789999998855321 1
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008788 481 --VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE 537 (553)
Q Consensus 481 --~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~ 537 (553)
.-+-||++.+|+.+.+|+.|..+|..|+++--+.. .-..-.+|...+...+++++
T Consensus 77 ~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~--L~~We~rLet~L~~~~kkQ~ 133 (368)
T COG5091 77 KIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDT--LPLWEDRLETKLNKKNKKQK 133 (368)
T ss_pred eeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHhHhhHhhc
Confidence 22568999999999999999999999999855432 33333445555544444443
No 343
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.37 E-value=3.1 Score=31.52 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
+.|..+-..|..+=+.|+|.+|+..|.+|++.|..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45666677788888899999999999999998754
No 344
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.11 E-value=4.9 Score=31.21 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
.|..+-.++..+=+.|+|.+|+.+|..|+++|..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4666777888888999999999999999998755
No 345
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.07 E-value=1.7 Score=45.21 Aligned_cols=59 Identities=19% Similarity=0.417 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 451 LNVAACLLKLGECRKSIEACNKVL--------DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al--------~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
.-|...|.-+|+|..|++..+.+= ..-+.++..+|..|.||+++++|.+|++.|..+|-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667999999998765421 11245778899999999999999999999998874
No 346
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=83.81 E-value=4.4 Score=31.34 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
++.|..+-.+|...=..|+|++|+.+|.+|++.|..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456777778888888999999999999999998755
No 347
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.09 E-value=32 Score=31.48 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~---n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
..++..+|.-|.+.|++..|++.|.++.+.... -...+++.-.+.+..++|..+...+.+|-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998887643 34567888889999999999999999998763
No 348
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=82.62 E-value=9.9 Score=37.71 Aligned_cols=99 Identities=7% Similarity=-0.071 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~-lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
+|..+.....+.+..+.|...+.+|++..+.+...|...|..-++ .++.+.|...|+++++.-|.+..-+...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~- 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI- 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 344555555666679999999999997777788999999999777 466666999999999999987433333333332
Q ss_pred HHHHHHHHHHHHHHhhcccccC
Q 008788 528 QRRKLKVRLENSLKGCLTRSLG 549 (553)
Q Consensus 528 ~~~~~~~~~~~~~~~mf~~~~~ 549 (553)
.+. ...+-|..|.+..+..+.
T Consensus 82 ~~~-d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 82 KLN-DINNARALFERAISSLPK 102 (280)
T ss_dssp HTT--HHHHHHHHHHHCCTSSC
T ss_pred HhC-cHHHHHHHHHHHHHhcCc
Confidence 222 234556777776665443
No 349
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.97 E-value=4.2 Score=35.77 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~ 498 (553)
......|...+..|+|.-|+..++.++..||+|..|...++.++.+++.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456778888889999999999999999999999999999999998887543
No 350
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.96 E-value=7.4 Score=30.07 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
+..|..+...|..+=..|++++|+.+|.+|++.|..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345666777788888899999999999999998765
No 351
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=81.74 E-value=2.8 Score=27.75 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
.+|..||.+.+..++|++|+.++.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999874
No 352
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.95 E-value=32 Score=35.79 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=73.2
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC---HHHHH---HH
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE---CRKSI---EA 469 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~---~~~A~---~~ 469 (553)
=.+.-+.+.|..++++..|.+|+.+.-.|=++|..+.+.- -..-+..+.+.+.+-.||+.+++ .++|- ..
T Consensus 161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~kl----Le~VDNyallnLDIVWCYfrLknitcL~DAe~RL~r 236 (568)
T KOG2561|consen 161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKL----LELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVR 236 (568)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHH----HHhhcchhhhhcchhheehhhcccccCChHHHHHHH
Confidence 3566788999999999999999999988877766554421 01112234455566788888875 33332 23
Q ss_pred HHHHHhh--------------CCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHH
Q 008788 470 CNKVLDA--------------NPAHVKGLYRR-----GMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 470 ~~~al~~--------------dp~n~ka~~r~-----g~a~~~lg~~~~A~~~l~~al~ 509 (553)
|.+-+.. ...-.+|+|.| |...++.|+-++|.+.|+.|..
T Consensus 237 a~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 237 ARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3333322 12334565544 8999999999999999998864
No 353
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=80.91 E-value=11 Score=38.96 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCC
Q 008788 448 LLHLNVAACLLK---LGECRKSIEACNKVL-DANPAHVKGLYRRGMAYMALG---------EFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 448 ~~~~nla~~~~k---l~~~~~A~~~~~~al-~~dp~n~ka~~r~g~a~~~lg---------~~~~A~~~l~~al~l~P~~ 514 (553)
.+...+|.++.+ .|+.++|++.+..++ ..++.++..|...|.+|..+- .++.|+.+|.++.+++|+.
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 345567888888 899999999999954 555678888988898887642 3688999999999999864
Q ss_pred hH
Q 008788 515 EP 516 (553)
Q Consensus 515 ~~ 516 (553)
-+
T Consensus 260 Y~ 261 (374)
T PF13281_consen 260 YS 261 (374)
T ss_pred cc
Confidence 33
No 354
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.33 E-value=7.9 Score=38.17 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=48.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
-+.-.+..+++.+|...+..++..+|.|..+...++.|+...|+.+.|...|..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344556789999999999999999999999999999999999999999887764
No 355
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.23 E-value=15 Score=40.44 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=69.6
Q ss_pred hhhcccccc----C-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 008788 403 VTGNRLFKE----G-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL 474 (553)
Q Consensus 403 ~~G~~~~~~----g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al 474 (553)
..|..+++. . ++..|+..|.+|.+ ... ..+.+++|.|+..-. ++..|..++..|.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~-------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGN-------------PDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHh----cCC-------------chHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 455555553 2 78889999999887 332 346788898888765 5778999998887
Q ss_pred hhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCC
Q 008788 475 DANPAHVKGLYRRGMAYMAL----GEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~l----g~~~~A~~~l~~al~l~P 512 (553)
.. .+..|.|++|.||..- .+...|..++++|.+..+
T Consensus 356 ~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 356 KA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred Hc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 74 5889999999988863 578899999999988873
No 356
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=80.05 E-value=19 Score=36.25 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=82.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH--HHHHHHHh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI--EACNKVLD 475 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~--~~~~~al~ 475 (553)
+..=.+.|-.+....+|.-|...|-+|.+-+..+...- +. ...+-.+-+|...++..++.- -....+++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v----~A-----~~sLKYMlLcKIMln~~ddv~~lls~K~~l~ 279 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV----KA-----LTSLKYMLLCKIMLNLPDDVAALLSAKLALK 279 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcH----HH-----HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence 33344677778888999999999999988665543321 11 233344566777777776644 44556888
Q ss_pred hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~--lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
.+.....|+--.|.|+.+ |.+|+.|+.+|+.=|.-|| -++.+++.|-.
T Consensus 280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~----ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP----IVRSHLQSLYD 329 (411)
T ss_pred ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh----HHHHHHHHHHH
Confidence 888899999999999875 6799999999998888776 25555554433
No 357
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.69 E-value=6.6 Score=38.18 Aligned_cols=63 Identities=13% Similarity=0.258 Sum_probs=33.5
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
+.|..+|+.|+|++|+..|+.++..+.. +-+..+...++..+..|+.++++.+..+..|-+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~---------egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRR---------EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5566666666666666666665442221 01222334455566666666666666666554443
No 358
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.68 E-value=25 Score=37.98 Aligned_cols=68 Identities=19% Similarity=0.027 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 447 NLLHLNVAACLLKLGE-CRKSIEACNKVLDANPAHVKGLYRR------GMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~-~~~A~~~~~~al~~dp~n~ka~~r~------g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
..++.|++.++...+. +..+...+..+....|+|...+..+ +..+..+++..+|...+.++..+.|.+
T Consensus 101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 101 CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 6788999888877664 5556666666999999998887777 888888999999999999999999987
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.56 E-value=2.8 Score=24.90 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACN 471 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~ 471 (553)
.+++++|..+..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367899999999999999998875
No 360
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.16 E-value=42 Score=35.48 Aligned_cols=103 Identities=16% Similarity=0.229 Sum_probs=74.6
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC-------
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---PA------- 479 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d---p~------- 479 (553)
..|-|++|.+.-++||...+++...+ -....+.-.+..++-+++.|.+-.+++.+|++....+.+.. |.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d-~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQAD-LMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 45678888888888887655443222 12233444456678899999999999999998887777653 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+..++-+|.-....+.|+.|...|..|.++-..
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~ 399 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES 399 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH
Confidence 3456677777777888899999999999998654
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.55 E-value=12 Score=37.94 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=56.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 008788 468 EACNKVLDANPAHVKGLYRRGMAYMALGE------------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVR 535 (553)
Q Consensus 468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~------------~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (553)
..+++.++-+|.++.+|..+..-.-.+-. .+..+..|++||+.+|++.. +...+-++..++- ...+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~-L~l~~l~~~~~~~-~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER-LLLGYLEEGEKVW-DSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhC-CHHH
Confidence 45788999999999999998876666543 46677899999999998743 3332222222222 3345
Q ss_pred HHHHHHhhcccccCCC
Q 008788 536 LENSLKGCLTRSLGKF 551 (553)
Q Consensus 536 ~~~~~~~mf~~~~~~~ 551 (553)
..+.++++....++++
T Consensus 84 l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHCCCCh
Confidence 5667888877776654
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.05 E-value=53 Score=37.39 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=77.1
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
....+=.+....+|.+|.....++...+....-.. ...+.....--.|.+.+..++++.|++.++.++..-|.+
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 33445555667888898888888777543321111 112234444556777778899999999999999887654
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 481 -----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 481 -----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.-++...|.+++-.|+++.|+...+.+.++.-.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 457778899999999999999999999888443
No 363
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.11 E-value=29 Score=36.09 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=65.0
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--LGECRKSIEACNKVL 474 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k--l~~~~~A~~~~~~al 474 (553)
.+.....++..+|++++|..|...+...+.- -+.+.+ ...+.+++.+|.. .-+|.+|.+.++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~---------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRR----LPGREE---------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh---------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4566778888999999999999999997762 222211 2344555554433 446777777777555
Q ss_pred hhCC------------------------------CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 475 DANP------------------------------AH--------VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 475 ~~dp------------------------------~n--------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
..+- .+ ..-++.-|.-....|+|+.|..-+-+++++
T Consensus 197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3210 00 112344444455688999999999999886
No 364
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.70 E-value=11 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=29.3
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
+.+..+-.+|...=..|+|++|+..|..|+++|..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 35666667778888899999999999999998765
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.82 E-value=35 Score=35.22 Aligned_cols=115 Identities=16% Similarity=0.056 Sum_probs=83.9
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...-..+......+-++|.|.-|++..+--+. ++|.+|- ..+.+-+=...++.++|+--++.++...
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLls----Ldp~~DP---------~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLS----LDPDEDP---------LGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCCCCc---------chhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 34455566677777888999999987776666 7887432 3455556667778899999999998876
Q ss_pred hhCCC-----CHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 475 DANPA-----HVKGLYRRGMAYMALGEF---------------EEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 475 ~~dp~-----n~ka~~r~g~a~~~lg~~---------------~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
..... -+..-|-.+.|++.+++- +.|...+++|+..-|. .+...++++
T Consensus 167 ~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~---vl~~Ll~~l 234 (360)
T PF04910_consen 167 AKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW---VLVPLLDKL 234 (360)
T ss_pred hhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH---HHHHHHHHh
Confidence 63221 235678899999999998 8999999999999886 244445444
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.54 E-value=11 Score=24.60 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCC
Q 008788 449 LHLNVAACLLKLGECRKSIEACN--KVLDANPAH 480 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~--~al~~dp~n 480 (553)
.+..+|.++..+|+|++|+..++ -+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35667888999999999999944 888888765
No 367
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.37 E-value=15 Score=28.36 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 008788 496 EFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 496 ~~~~A~~~l~~al~l~P~~ 514 (553)
.|.+|++.|.+++++.|++
T Consensus 28 ~Y~~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 28 NYKKAIEVLSQIVKNYPDS 46 (75)
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 3455566666667777775
No 368
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.99 E-value=12 Score=36.61 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 466 A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
|+.+|.+|+.+.|++...|..+|..+...++.=.|+-+|-|++-..-.. +.++..|..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999765443 3344444443
No 369
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.47 E-value=33 Score=30.42 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~ 498 (553)
+-.--+..++..++|.+|++.++.+.+-.+..+-+--.++.|+..+|+.+
T Consensus 46 ~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 46 LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 44455666666777777777777666666555544445566666666653
No 370
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.34 E-value=47 Score=32.82 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=67.5
Q ss_pred HHhhhccccc----cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc----C---CHHHHHHH
Q 008788 401 IRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----G---ECRKSIEA 469 (553)
Q Consensus 401 ~k~~G~~~~~----~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl----~---~~~~A~~~ 469 (553)
+...|..++. ..++.+|...|++|.+ ...... ..+.++++.+|..- + ....|+..
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~----~g~~~a----------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~ 177 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAK----LGNVEA----------ALAMYRLGLAYLSGLQALAVAYDDKKALYL 177 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHH----cCChhH----------HHHHHHHHHHHHcChhhhcccHHHHhHHHH
Confidence 3344444443 4488999999999888 322110 23366777777663 1 23478888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008788 470 CNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 470 ~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P 512 (553)
+.++-... +..+.+++|.+|.. ..++.+|..+|.+|.+...
T Consensus 178 ~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 178 YRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88887765 88999999988876 3489999999999998775
No 371
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=72.98 E-value=15 Score=43.28 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=85.6
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+....+.|......+.+.+|.+ ..+++.+++.... +++.-...+|..+|..+.+++++.+|+..+.+|.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~-------~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMG-------VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhh-------hcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 457778888988889999999988 7788876653211 11222367899999999999999999999998775
Q ss_pred hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 476 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 476 ~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+. |+...+|-.++...+...+...|+..+.+++.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 53 456778889999999999999999999999886
No 372
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=72.52 E-value=27 Score=27.13 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhCCC
Q 008788 497 FEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 497 ~~~A~~~l~~al~l~P~ 513 (553)
|.+|++.|..+++.+|+
T Consensus 29 Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 29 YQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 44455555566666775
No 373
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=72.26 E-value=14 Score=36.19 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008788 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (553)
Q Consensus 417 A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~ 493 (553)
|...|.+|+. +.|.. ...|+.+|..+...++.-.|+-+|-+++......+.|.-++...+..
T Consensus 1 A~~~Y~~A~~----l~P~~-----------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR----LLPSN-----------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH----H-TTB-----------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----hCCCC-----------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999 66766 57899999999999999999999999998876677787777777766
No 374
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.12 E-value=45 Score=29.02 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 450 HLNVAACLLKLGECRKSIE-ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~-~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|.++|+-++-...-++.++ .++..+..+..++..++.+|.||.++|+..+|-+.+++|.+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5566666555444344443 344444455678999999999999999999999999998763
No 375
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.55 E-value=31 Score=33.46 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHH
Q 008788 413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYR 486 (553)
Q Consensus 413 ~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp------~n~ka~~r 486 (553)
.-...+..+.+|+..+..... .-+...+...+|.-|++.|+|++|+..++.+...-. -....+-+
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~ 223 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWR 223 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 344567778888876654332 112345677899999999999999999999965422 12456777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 008788 487 RGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 487 ~g~a~~~lg~~~~A~~~l~~ 506 (553)
+..|..++|+.+..+...-+
T Consensus 224 l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 224 LLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 88999999998877665443
No 376
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.93 E-value=23 Score=36.56 Aligned_cols=93 Identities=11% Similarity=0.048 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH---H
Q 008788 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKL---K 533 (553)
Q Consensus 459 kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg--~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~---~ 533 (553)
+..-+++-+.+...+|..+|+..-+|+.|.-++.+.. ++..-++..+++|++||.|. .++..-+-+-...+.. .
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf-h~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF-HAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc-cchHHHHHHHHHHhcccccc
Confidence 3445777788888899999999999999999988765 46788888999999999874 3444444444444333 4
Q ss_pred HHHHHHHHhhcccccCCCC
Q 008788 534 VRLENSLKGCLTRSLGKFL 552 (553)
Q Consensus 534 ~~~~~~~~~mf~~~~~~~~ 552 (553)
+.+-..-.+|-+..+.+|+
T Consensus 166 ~~El~ftt~~I~~nfSNYs 184 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYS 184 (421)
T ss_pred hhHHHHHHHHHhccchhhh
Confidence 4444444455555555554
No 377
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=70.73 E-value=24 Score=39.72 Aligned_cols=100 Identities=19% Similarity=0.120 Sum_probs=63.2
Q ss_pred cccCCHHHHHHHHHHHHHH--hhc----cCCCChh----HHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 008788 409 FKEGKFELAKAKYEKVLRD--FNH----VNPQDDE----EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV----- 473 (553)
Q Consensus 409 ~~~g~~~~A~~~Y~~Al~~--l~~----~~~~~~e----e~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a----- 473 (553)
...|-.++|...|+++-++ +++ ....++. |.+. +-.....|+|.|.-+-..++-+.|+++|.++
T Consensus 811 ieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~D-RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~haf 889 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKD-RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAF 889 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcc-ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHH
Confidence 3456777788877776442 222 1111110 0111 1122357888888888888999999998873
Q ss_pred -----HhhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 474 -----LDANPA----------HVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 474 -----l~~dp~----------n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
|.-+|. +.+.|-..|+-+...|+.+.|+..|..|-.
T Consensus 890 ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 890 EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 222332 345566678888889999999999988754
No 378
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.51 E-value=60 Score=35.65 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHH
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----GECRKSIEACNKVLDANPAHVKGLY 485 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl----~~~~~A~~~~~~al~~dp~n~ka~~ 485 (553)
+..++.+|...|..|.. .. + ..+++++|.||..- .+...|..++.+|-+.+ ++.|.+
T Consensus 340 ~~~d~~~A~~yy~~Aa~----~G--~-----------~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~ 400 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAK----AG--H-----------ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAY 400 (552)
T ss_pred ccccHHHHHHHHHHHHH----cC--C-----------hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHH
Confidence 44678999999999987 21 1 56888999999763 47999999999999987 788889
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHh
Q 008788 486 RRGMAYMAL-GEFEEAQRDFEMMMKV 510 (553)
Q Consensus 486 r~g~a~~~l-g~~~~A~~~l~~al~l 510 (553)
+++..+... +.++.+...+..+..+
T Consensus 401 ~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 401 LLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHh
Confidence 988887765 7777776665555444
No 379
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=69.95 E-value=33 Score=26.85 Aligned_cols=65 Identities=18% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc--CC----CChhHHHHHhhhhhHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV--NP----QDDEEGKVFVGKRNLLHLNVAACLLK 459 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~--~~----~~~ee~~~~~~~~~~~~~nla~~~~k 459 (553)
.+.|-..-++|-.+=..|+.++|+..|++|++.|..- -| ...++++....+..+.-.|+..+-.+
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~R 75 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTR 75 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777877777899999999999999987642 11 12245555555555555555554433
No 380
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.19 E-value=84 Score=30.95 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
..|+..|.+|.... ...+.++++.||.. ..++.+|...+.+|-+... ..+.|+.+ +
T Consensus 172 ~~A~~~~~~aa~~~-----------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAELG-----------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHHhc-----------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 46777777776621 24678899999876 3489999999999999876 89999999 6
Q ss_pred HHHcC---------------CHHHHHHHHHHHHHhCCCC
Q 008788 491 YMALG---------------EFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 491 ~~~lg---------------~~~~A~~~l~~al~l~P~~ 514 (553)
+..-| +...|..++.++....+..
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 66555 8888899999888877653
No 381
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=68.42 E-value=51 Score=36.17 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=76.3
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChh-------H-HHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-------E-GKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~e-------e-~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (553)
+.+..+.+.|..-.+..+++.|+++.++|+.. |...+ + .+..--....+|.-++..--..|-++.+.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-----P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-----PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-----CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 45777888888888899999999999998762 22111 0 01111111345555565555667788888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
..|+++|++.-..+....+.|.-+..-..|++|-+.|++.+.|-+
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 888888888777777777777777777777777777777777743
No 382
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.33 E-value=43 Score=31.75 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=52.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
.+++.+...+|+.....-++.+|.+.-...-+=+.+.-.|+|+.|...++-+-.++|+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456778899999999999999999988777777888889999999999999999999854
No 383
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.09 E-value=14 Score=35.83 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=45.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 459 KLGECRKSIEACNKVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 459 kl~~~~~A~~~~~~al~~dp~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+..++++|+..+.++|++.+.. .||+-.+-++++++++|++....|++.|-.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 5678999999999999998754 689999999999999999999988877653
No 384
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.06 E-value=20 Score=34.55 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 008788 414 FELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~-~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (553)
.+.|...|++|+..... +.|.+ .++..+.+|.+..|.. +++..+|++.+.+|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~--------p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTH--------PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTS--------HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCC--------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47799999999998776 55544 3556788888877755 8999999999988754
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.01 E-value=55 Score=25.59 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=42.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 453 VAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~dp~n~ka---~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
.++-++..++..+|+....+||+..++.... +=.+.+||...|+|.+++++-.+=+.
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456788999999999999998876653 33457889999999998877554433
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.81 E-value=9.1 Score=26.23 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
+++|.+|+.+|+++.|....+.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 68999999999999999999999953
No 387
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=67.73 E-value=55 Score=33.88 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=62.2
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH--cCCHHHHHHHHHHHH-
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--LGECRKSIEACNKVL- 474 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k--l~~~~~A~~~~~~al- 474 (553)
.......+..+|++++|..|...|..++. ..+.. +.. ....++.+++.||.. .=++++|.+.+++.+
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~----r~l~~-~~~-----~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~ 199 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLR----RLLSA-VNH-----TFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLP 199 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHh----cccCh-hhh-----hHHHHHHHHHHHHHHHHccCHHHHHHHHhhccc
Confidence 34444677799999999999999999887 22222 111 123455566665544 446777777776211
Q ss_pred ----------------------hhCCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 475 ----------------------DANPAH------------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 475 ----------------------~~dp~n------------------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
.+-|.. ..-++.-|.-....|+|+.|..-+-+++++
T Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 200 ERLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred hhhhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 011210 011222344445789999999988888875
No 388
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.40 E-value=20 Score=36.89 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDA--NP--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~--dp--~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+.+-+-.||+..+.|+.|-....++--- +. ..+.-+|..|.+..-..+|..|.++|-.|+...|++
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 4444556788888899988888776622 22 345668889999999999999999999999999974
No 389
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.75 E-value=37 Score=44.34 Aligned_cols=85 Identities=14% Similarity=-0.003 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHHhCCCChHH
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL----GE----FEEAQRDFEMMMKVDKSSEPD 517 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~l----g~----~~~A~~~l~~al~l~P~~~~~ 517 (553)
.+..+.-.|.-+.+++++++|-..+..|+.++-.-.|||+..|.-+.++ .. -..|+.+|-+|....-++ .
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~s--k 2888 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSS--K 2888 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccch--h
Confidence 4567778899999999999999999999999999999999998876652 11 356888888888877553 4
Q ss_pred HHHHHHHHHHHHHHH
Q 008788 518 ATAALSKLKKQRRKL 532 (553)
Q Consensus 518 ~~~~l~~l~~~~~~~ 532 (553)
+++.|.++.-.+.-.
T Consensus 2889 aRk~iakvLwLls~d 2903 (3550)
T KOG0889|consen 2889 ARKLIAKVLWLLSFD 2903 (3550)
T ss_pred hHHHHHHHHHHHHhc
Confidence 788888776666533
No 390
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=66.35 E-value=17 Score=22.42 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 008788 466 SIEACNKVLDANPAHVKGLYRRGMAYMAL 494 (553)
Q Consensus 466 A~~~~~~al~~dp~n~ka~~r~g~a~~~l 494 (553)
.+..+..+|..+|.|..+|..|-.+..++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46788899999999999988887766554
No 391
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.25 E-value=1.4e+02 Score=29.26 Aligned_cols=105 Identities=21% Similarity=0.244 Sum_probs=71.1
Q ss_pred ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-CCHHHHHH
Q 008788 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIE 468 (553)
Q Consensus 390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~ 468 (553)
.+++.+....+.. ++..+-.+|++.-..+|. ++|.+ -.++..+=.|...+ .+..+-++
T Consensus 41 ~fr~~m~YfRAI~------~~~E~S~RAl~LT~d~i~----lNpAn-----------YTVW~yRr~iL~~l~~dL~~El~ 99 (318)
T KOG0530|consen 41 DFRDVMDYFRAII------AKNEKSPRALQLTEDAIR----LNPAN-----------YTVWQYRRVILRHLMSDLNKELE 99 (318)
T ss_pred hHHHHHHHHHHHH------hccccCHHHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555544432 234456778888888888 67766 34444444444443 35677778
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCh
Q 008788 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFE-EAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 469 ~~~~al~~dp~n~ka~~r~g~a~~~lg~~~-~A~~~l~~al~l~P~~~ 515 (553)
+.+.+++-+|.|...|..|-.....+|++. .-++..+.++..|..|-
T Consensus 100 ~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY 147 (318)
T KOG0530|consen 100 YLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY 147 (318)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch
Confidence 888888888888888888888888888777 67777888888776653
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.21 E-value=23 Score=32.81 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 463 ~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
....++...+.++..| ++..+.+++.++..+|+.++|...++++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4556677777888888 89999999999999999999999999999999953
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.53 E-value=1.4e+02 Score=33.23 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=77.4
Q ss_pred HHHHHHHhhhcccc-ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 396 DEAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 396 ~~a~~~k~~G~~~~-~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
..+....+.|..++ ...++++|.....+|+..... +. +.+++..+.+-++.++.+.+... |+..|++++
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~-------~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER--HR-------LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cc-------hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 35667778888888 678999999999999886554 21 23344556667788888877666 999999999
Q ss_pred hhCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC
Q 008788 475 DANPA----HVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 475 ~~dp~----n~ka~~r~g~a~~~--lg~~~~A~~~l~~al~l~ 511 (553)
+.-.. ...-.||.-++... .+++..|++.++....+.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 87554 45555665544332 369999999999988875
No 394
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.32 E-value=42 Score=25.94 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=16.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 487 RGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 487 ~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
.|.-.-..|+|++|+..|..|+++
T Consensus 12 ~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 12 QAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHhhHhhhHHHHHHHHHHHHHH
Confidence 333344568888888888888765
No 395
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=63.42 E-value=31 Score=33.78 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=59.0
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ 481 (553)
...-+.+...+++..|...-.+.+. ++|.+.. -..-+|..|.+++.++-|+.+....++.-|+.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~----l~P~dp~-----------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLD----LNPEDPY-----------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHh----hCCCChh-----------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 3444556678899999999888888 6777632 244689999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 008788 482 KGLYRRGMA 490 (553)
Q Consensus 482 ka~~r~g~a 490 (553)
.|-.-+++.
T Consensus 250 ~a~~ir~~l 258 (269)
T COG2912 250 IAEMIRAQL 258 (269)
T ss_pred HHHHHHHHH
Confidence 877666554
No 396
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=63.21 E-value=93 Score=34.28 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~--n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+|...++.+++++........+++||..-|- +-+.|--.-+-....+-.+-++..|++-|+++|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~ 171 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA 171 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH
Confidence 46667777788889999999999999988763 33333333344455566789999999999999985
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.45 E-value=44 Score=29.39 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
.-...+..+++..+..|+|..|.+.+..++..+|+|. +++.....+-.++
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~-~ar~l~A~al~~l 117 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE-EARQLKADALEQL 117 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHH
Confidence 3566777889999999999999999999999999984 5666555554444
No 398
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=62.15 E-value=21 Score=42.16 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=79.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..++..+..+.+.+++++|+..-.+|.-..+.....+.. .....|.|++...+..++...|+..+.+++.+.
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~-------~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP-------NTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH-------HHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 5566777778888888888888877776543333322211 124578899999999999999999999998774
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 478 --------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 478 --------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
|.-+-..-+.+..+..+++++.|++.++.|+++.
T Consensus 1046 ~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1046 LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4334444567777888999999999999999863
No 399
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.59 E-value=60 Score=30.35 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP----AHVKGLYRRGMAYMALGEFEEAQ 501 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp----~n~ka~~r~g~a~~~lg~~~~A~ 501 (553)
+.+.+.+|.-|. ..+..+|+..+.++|++.. -|+..+.-++.++..+++++.|-
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345666666665 4667888888888887743 25777888888888888887764
No 400
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=60.48 E-value=2.2e+02 Score=29.65 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=35.3
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 459 kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
++|.++.|++|..++-..-|.-+-|.--.-......|+|+.|++.+....
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 46777777777777777777777776666666777777777777665443
No 401
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=60.21 E-value=40 Score=33.50 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
.++.|-.+-..+...-+.++|.+|...|..|++|+..
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 4566777777888888899999999999999998753
No 402
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=58.55 E-value=62 Score=24.82 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhCCC
Q 008788 498 EEAQRDFEMMMKVDKS 513 (553)
Q Consensus 498 ~~A~~~l~~al~l~P~ 513 (553)
..|++.|..+++.+|+
T Consensus 30 ~~aie~l~~~~k~e~~ 45 (75)
T cd02678 30 QHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 3344444455555664
No 403
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.11 E-value=1.6e+02 Score=29.62 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=64.7
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 008788 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVK--GLYRRGMAYMALGEFEEAQRDFEMMMKV--DKS 513 (553)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp------~n~k--a~~r~g~a~~~lg~~~~A~~~l~~al~l--~P~ 513 (553)
+..+.+...+|..|-+.++|..|..... ++.++. .+.| .+.|.|.+|...++-.+|....+++--+ +.+
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 3346788899999999999999877552 333332 1223 3677899999999999999999887443 444
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 008788 514 SEPDATAALSKLKKQRRKLKVR 535 (553)
Q Consensus 514 ~~~~~~~~l~~l~~~~~~~~~~ 535 (553)
| ..++-+++.|..+.-.++.+
T Consensus 179 N-e~Lqie~kvc~ARvlD~krk 199 (399)
T KOG1497|consen 179 N-EQLQIEYKVCYARVLDYKRK 199 (399)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 4 56787888887776655543
No 404
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=57.94 E-value=1.3e+02 Score=32.69 Aligned_cols=69 Identities=16% Similarity=0.059 Sum_probs=56.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHH
Q 008788 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM-MMKVDKSSEPDATAAL 522 (553)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~-al~l~P~~~~~~~~~l 522 (553)
++..+..++....+.-....++..||.++.++-.++.+....+....|...+.. |..+.|+|. .....+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA-EFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH-HHHhhH
Confidence 677777888888999999999999999999999999999998877666665555 999999873 344333
No 405
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=57.85 E-value=25 Score=38.68 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=54.8
Q ss_pred HHhhhcccc-ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Q 008788 401 IRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL----- 474 (553)
Q Consensus 401 ~k~~G~~~~-~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al----- 474 (553)
.+..+..++ +.|+|.+-...|+..- .+++++ .+..++.|+|..+..+..|.+|.++|.+.-
T Consensus 762 rrDLAielr~klgDwfrV~qL~r~g~-------~d~dD~------~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~ 828 (1189)
T KOG2041|consen 762 RRDLAIELRKKLGDWFRVYQLIRNGG-------SDDDDE------GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQ 828 (1189)
T ss_pred hhhhhHHHHHhhhhHHHHHHHHHccC-------CCcchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhH
Confidence 344444444 5678877777776521 122221 123455666666666666666666655421
Q ss_pred -----------------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 475 -----------------DANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 475 -----------------~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
+.-|++.+.+=.+|..+...|.-++|.+.|-+
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 22377777777788888888888888776643
No 406
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=56.73 E-value=75 Score=29.47 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=66.2
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
..++-..+..+..+|++++|...+++|.+.+..+...- . - .+-.++.+.|-.-+++|-+|...+.-.-.-.
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l-------~-~-~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~ 99 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLL-------A-G-FPELYFAGFVTTALQEYVEATLLYSILKDGR 99 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-------h-h-hHHHHHHHhhcchHHHHHHHHHHHHHHhcCC
Confidence 33455566677789999999999999988665542100 0 0 2234556777777889999999887766544
Q ss_pred CCCHH------H------------HHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 478 PAHVK------G------------LYRRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 478 p~n~k------a------------~~r~g~a~~~lg~~~~A~~~l~~a 507 (553)
-..++ + +.|...-....|+++.|...++-.
T Consensus 100 ~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 100 LPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFM 147 (204)
T ss_pred CCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 22221 2 444555667788999998776533
No 407
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=56.38 E-value=43 Score=25.12 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=10.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 008788 487 RGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 487 ~g~a~~~lg~~~~A~~~l~~al 508 (553)
+|.-+-..|+|++|+..|..|+
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3333444555555555554444
No 408
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.29 E-value=2.1e+02 Score=29.00 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCC--------hhHHHHHhhhhhHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CH
Q 008788 414 FELAKAKYEKVLRDFNHVNPQD--------DEEGKVFVGKRNLL--HLNVAACLLKLGECRKSIEACNKVLDANPA--HV 481 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~~~~~~--------~ee~~~~~~~~~~~--~~nla~~~~kl~~~~~A~~~~~~al~~dp~--n~ 481 (553)
..+|.+.+++||+..+..-..+ .-+....++..+.. -..+|+|..|+|+..+|++.++...+--|- -.
T Consensus 232 i~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~l 311 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTML 311 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHH
Confidence 5567777777777543321110 01112223333333 357899999999999999999988877662 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
..+-++-.++.++.-|.+....+.+
T Consensus 312 niheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 312 NIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566666555554444433
No 409
>PF15469 Sec5: Exocyst complex component Sec5
Probab=55.85 E-value=71 Score=29.22 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=20.2
Q ss_pred ccccccCCHHHHHHHHHHHHHHhhc
Q 008788 406 NRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 406 ~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
..+.++|+|+.|+..|.+|-..+..
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~ 118 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEK 118 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999886654
No 410
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.44 E-value=64 Score=25.22 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHhhCC
Q 008788 462 ECRKSIEACNKVLDANP 478 (553)
Q Consensus 462 ~~~~A~~~~~~al~~dp 478 (553)
.|+.|..+.++||..|.
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 46677777777777664
No 411
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.99 E-value=72 Score=24.32 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 008788 497 FEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 497 ~~~A~~~l~~al~l~P~ 513 (553)
|..|++.|..+++.+|+
T Consensus 29 Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 29 YKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 33444444455555654
No 412
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=54.90 E-value=41 Score=35.92 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL---GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 460 l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~l---g~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
...+..|+.++.+++..-|.+.-.|-+|+.++++. |+.-.|+.+...|++++|... .++-.|.++...+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~-kah~~la~aL~el 458 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ-KAHFRLARALNEL 458 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH-HHHHHHHHHHHHH
Confidence 35678899999999999999999999999999985 456789999999999999753 2443444443333
No 413
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.90 E-value=56 Score=25.04 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhCCC
Q 008788 497 FEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 497 ~~~A~~~l~~al~l~P~ 513 (553)
|..|++.|.++++.+|+
T Consensus 31 Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 31 YKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 34444555555566765
No 414
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.85 E-value=1.7e+02 Score=26.81 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=65.5
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA--NP 478 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--dp 478 (553)
....|..+...|+-..|+..|..+-. ..+-. ...+-.+.+..|..+...+-|++...-.+. |.- +|
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~----dt~~P-------~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~ 164 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAA----DTSIP-------QIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNP 164 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhc----cCCCc-------chhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCCh
Confidence 34556667778888899988888766 22221 111123455666777778889887665543 333 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
-...|.--+|.+-.+-|+|..|+.+|.....
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4455556678888999999999999998877
No 415
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.58 E-value=2e+02 Score=27.45 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=60.1
Q ss_pred ccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--
Q 008788 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG-- 483 (553)
Q Consensus 406 ~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka-- 483 (553)
.++.+.++..+|+..-+.-++ .+|.+ ..+...+=..+.-+|+|.+|...|+-+-.++|+..+-
T Consensus 9 seLL~~~sL~dai~~a~~qVk----akPtd-----------a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ 73 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK----AKPTD-----------AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGAS 73 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh----cCCcc-----------ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHH
Confidence 456677888999988888777 67766 2233333334556899999999999999999976542
Q ss_pred HHHHHH---HHHH-----------cC-CHHHHHHHHHHHHHhCCC
Q 008788 484 LYRRGM---AYMA-----------LG-EFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 484 ~~r~g~---a~~~-----------lg-~~~~A~~~l~~al~l~P~ 513 (553)
+||-.. +..+ +| ...+=+..+..|+.++-+
T Consensus 74 lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 74 LYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 333221 1111 22 445555666777777655
No 416
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.44 E-value=1.7e+02 Score=29.02 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=42.2
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (553)
.+.+|.+.+.+++++|+..|.+.|.. -...++ ...+......+++...|..+|++..-.+...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k---g~s~de----k~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK---GVSKDE----KTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC---CCChhh----hhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 36788889999999999999998772 111111 1111224567889999999998765444443
No 417
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=54.40 E-value=1.8e+02 Score=30.67 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=65.8
Q ss_pred HHHHHhhhccccccCCHHHHHH-----HHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKA-----KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~-----~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
-..+|+++..-.+.++. +|-+ .|++.++.|+. +..-.++.....+..+-.+++. .+-..|+..|..
T Consensus 267 d~VmkEW~~ae~qaKnP-KAekqalnqhFQ~~v~sLEe-------e~a~erqqlvetH~~RV~AmlN-drrR~Ale~yla 337 (615)
T KOG3540|consen 267 DKVMKEWEEAETQAKNP-KAEKQALNQHFQKTVSSLEE-------EAARERQQLVETHEARVEAMLN-DRRRDALENYLA 337 (615)
T ss_pred HHHHHHHHHHHhcccCc-hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 33455666655566663 3433 34444443322 2111222334555555554433 456789999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC
Q 008788 473 VLDANPAHVKGLYRRGMAYMAL--GEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 473 al~~dp~n~ka~~r~g~a~~~l--g~~~~A~~~l~~al~l~P~~ 514 (553)
||..+|..+.-.+..-+.|.+. ++-.-.+..|+.++..||..
T Consensus 338 ALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkk 381 (615)
T KOG3540|consen 338 ALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKK 381 (615)
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 9999998887666655555544 44455789999999999974
No 418
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.89 E-value=2e+02 Score=33.75 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=70.5
Q ss_pred hhhccccccCCHHHHHHHHHH------HHHHhhc-cCCCChhHHH-HHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEK------VLRDFNH-VNPQDDEEGK-VFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~------Al~~l~~-~~~~~~ee~~-~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
+.|+.....+-|++|...|++ |+..|-. +..-+ ...+ ..+-....+|..+|.+++..+..++|++.+-+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ld-RA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLD-RAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHH-HHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 455666666777888777664 5554321 21111 0000 011123568999999999999999999999443
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+++.+|..--.+..+.|.|++-+.++..|-+-
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 56777888888899999999999999988765
No 419
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.74 E-value=1.4e+02 Score=31.10 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 413 ~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
.++.-+..-..|+. .+|++ -.+++-+..++.+.. +|..=++.|+++|+.||.|..+|..|-.+
T Consensus 90 ~ld~eL~~~~~~L~----~npks-----------Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV 154 (421)
T KOG0529|consen 90 LLDEELKYVESALK----VNPKS-----------YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV 154 (421)
T ss_pred hhHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence 45555555556666 56655 467888888888766 47889999999999999999987555333
Q ss_pred HH-HcCC---HHHHHHHHHHHHHhCCCChH
Q 008788 491 YM-ALGE---FEEAQRDFEMMMKVDKSSEP 516 (553)
Q Consensus 491 ~~-~lg~---~~~A~~~l~~al~l~P~~~~ 516 (553)
.. .... ..+-++...+++.-+++|-.
T Consensus 155 ~~~~~~~~~~~~~El~ftt~~I~~nfSNYs 184 (421)
T KOG0529|consen 155 VEQAERSRNLEKEELEFTTKLINDNFSNYS 184 (421)
T ss_pred HHHHhcccccchhHHHHHHHHHhccchhhh
Confidence 33 3333 67777888888888888754
No 420
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.57 E-value=69 Score=29.48 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE 499 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~ 499 (553)
-...+++++.|.|++|.+.+.+... ||++.+--..+...-...+.|..
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 3445667788999999999998888 88777763333443333333333
No 421
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.02 E-value=1.1e+02 Score=33.03 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=51.7
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ 481 (553)
...+..+...|+.+.|+..++.+++ .. +++..+-+++-+|.|+.-+.+|.+|..++....+.. ++.
T Consensus 271 l~~ar~l~~~g~~eaa~~~~~~~v~----------~~---~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS 336 (546)
T KOG3783|consen 271 LMEARILSIKGNSEAAIDMESLSIP----------IR---MKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWS 336 (546)
T ss_pred HHHHHHHHHcccHHHHHHHHHhccc----------HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhh
Confidence 3455555555665666666655444 12 344557789999999999999999999999988876 477
Q ss_pred HHHHHH
Q 008788 482 KGLYRR 487 (553)
Q Consensus 482 ka~~r~ 487 (553)
+|+|..
T Consensus 337 ~a~Y~Y 342 (546)
T KOG3783|consen 337 HAFYTY 342 (546)
T ss_pred HHHHHH
Confidence 777765
No 422
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.71 E-value=82 Score=30.78 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=61.0
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008788 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLE 537 (553)
Q Consensus 459 kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~ 537 (553)
+...-..|++....+|.++|.|...|-.|-.++.+++ +..+-++++....+-+|.|- .++..-+.+-+.+....-++-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY-QvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY-QVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch-hHHHHHHHHHHHhcCcccchH
Confidence 4566788999999999999999999877777777765 67888899999999999874 355555555444443332344
Q ss_pred HHHHhhcc
Q 008788 538 NSLKGCLT 545 (553)
Q Consensus 538 ~~~~~mf~ 545 (553)
..-++||.
T Consensus 134 ef~~~~l~ 141 (318)
T KOG0530|consen 134 EFTKLMLD 141 (318)
T ss_pred HHHHHHHh
Confidence 44444444
No 423
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.28 E-value=51 Score=32.21 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=62.4
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
..|+.+|.+++|.+-.+..++.-.. +...+.++...--.....+|.---+.|...++.+.-...+.++|.+...-+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~S---Cq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQS---CQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHH---hccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3566677777666544444433222 2222222111111112345555556777778888888889999988643333
Q ss_pred HH----HHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 008788 483 GL----YRR--GMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 483 a~----~r~--g~a~~~lg~~~~A~~~l~~al~l 510 (553)
-+ .|- |+.|++-|+|++|..+|-.|.+-
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 22 222 67788899999999999988874
No 424
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=50.91 E-value=1.1e+02 Score=23.50 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 008788 497 FEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 497 ~~~A~~~l~~al~l~P~ 513 (553)
|..|++.|..+++.+++
T Consensus 29 Y~~ale~~~~~~k~e~~ 45 (75)
T cd02684 29 YCSALQYFVPALHYETD 45 (75)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 33444444555555654
No 425
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=50.54 E-value=1.5e+02 Score=24.85 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=48.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCC
Q 008788 453 VAACLLKLGECRKSIEACNKVLDANPAHVK---GLYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~dp~n~k---a~~r~g~a~~~lg~-----------~~~A~~~l~~al~l~P~~ 514 (553)
+|.-++..|++-+|++.....+....++.. .++..|..+..+.. .-.|+++|.++..|.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 466778899999999999999988877664 45556887766543 356889999999999974
No 426
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.51 E-value=1.6e+02 Score=31.69 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh------CC-CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDA------NP-AHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~------dp-~n~ka~~r~g~a~~~lg~-~~~A~~~l~~al~l~P~~ 514 (553)
-++-+|.|+..+|+...|...+..+++. |+ --+-|+|.+|..+..++. ..+|++++.+|-...-+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4567899999999999999999888733 12 136799999999999999 999999999998877554
No 427
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=48.98 E-value=49 Score=35.22 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
.|-.||...+..|+++-|...+.+
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 455566666666666666555554
No 428
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.69 E-value=1.6e+02 Score=29.81 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~--dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
-+|+|.+..+..-...++......++- -....-.+--+|-.+.++|+-++|...|.+|+.+.++
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 468888887777777777776655543 1234555667899999999999999999999999987
No 429
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=48.07 E-value=81 Score=33.24 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=46.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
.....+.+..+|..|+|.++...-.- +..+.| + ..+|--+|+|.+-.++|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~W----L~~iaP-S-----------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSW----LTKIAP-S-----------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHH----HHHhCC-c-----------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55667888999999999988654333 333667 3 467888999999999999999987543
No 430
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=45.29 E-value=48 Score=21.08 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=18.3
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHHh
Q 008788 481 VKGLYRRG--MAYMALG-----EFEEAQRDFEMMMKV 510 (553)
Q Consensus 481 ~ka~~r~g--~a~~~lg-----~~~~A~~~l~~al~l 510 (553)
+.|.|++| .++..-. ++++|..+|++|.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35667777 4444332 467777777777654
No 431
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=44.07 E-value=87 Score=30.35 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 008788 414 FELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~-~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (553)
-+.|...|+.|++.... +.|.+ ..+..+.+|.+..|.. +++..+|+..+.+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~--------PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTH--------PIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45889999999987654 55544 3446677888877665 5888888887777664
No 432
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=43.71 E-value=3e+02 Score=28.39 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV-------------DKSSEPDATAALSKLKKQRRKLKVRLENSL 540 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-------------~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (553)
+-|+|..|..+...++|-+|+..|+.|... .+.....+...+..+...+...++....+|
T Consensus 239 A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~Iy 311 (377)
T PF03097_consen 239 ALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASKLAKKCSKSSSLQDDLKSLLDQIQEKLEKAEKDNDFIY 311 (377)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCCCHSCCSTTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 346788888888888888888777776543 112223455555666666665555544444
No 433
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=43.54 E-value=2e+02 Score=29.32 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+-|+|+.|..+...+++-+|+..|+.|+..
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 346778888888888888899888888764
No 434
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=43.35 E-value=51 Score=20.43 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 008788 482 KGLYRRGMAYMAL----GEFEEAQRDFEMMMKV 510 (553)
Q Consensus 482 ka~~r~g~a~~~l----g~~~~A~~~l~~al~l 510 (553)
.|.+++|..|..- .+...|..+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4556666666532 3666777777766543
No 435
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=42.82 E-value=1.2e+02 Score=25.99 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHh
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPA---------------HVKGLYRRGMAYMALGEFEEAQRDFEMM----MKV 510 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~---------------n~ka~~r~g~a~~~lg~~~~A~~~l~~a----l~l 510 (553)
+.++|.-.++.+++-.++-+|.+|+.+-.+ ++-.-.++|.-+...|+-+-.+++++-| +.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888889999999999999999965211 1334667889999999999999999755 445
Q ss_pred CCC
Q 008788 511 DKS 513 (553)
Q Consensus 511 ~P~ 513 (553)
-|.
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 554
No 436
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.63 E-value=62 Score=19.21 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 008788 496 EFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 496 ~~~~A~~~l~~al~l~P~~ 514 (553)
+++.|+..|++++...|.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~ 20 (33)
T smart00386 2 DIERARKIYERALEKFPKS 20 (33)
T ss_pred cHHHHHHHHHHHHHHCCCC
Confidence 4555666666666655543
No 437
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=41.29 E-value=22 Score=35.93 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~ 496 (553)
...|+.+++.++++.++++|+++...+...+|++....-+...+.....+
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 57899999999999999999999999999999877654444444433333
No 438
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=41.22 E-value=2.4e+02 Score=29.60 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhhCC-CCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 461 GECRKSIEACNKVLDANP-AHVK----------GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 461 ~~~~~A~~~~~~al~~dp-~n~k----------a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
++|..|++.|.+.-.+.. ..+. .--.+..||..+++.+.|+....+.+.++|..
T Consensus 197 ~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 197 GRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 455566666665444432 1111 12246889999999999999999999999985
No 439
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.99 E-value=62 Score=37.52 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHH
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKV 424 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~A 424 (553)
+.+++.....+-+.|....+.+...+|++.|-+|
T Consensus 1097 fAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1097 FAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 3344444555778888889999999999998876
No 440
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.89 E-value=1.6e+02 Score=22.75 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008788 495 GEFEEAQRDFEMMMK-------VDKSSEPDATAALSKLKKQRRKLKVRLENSLKG 542 (553)
Q Consensus 495 g~~~~A~~~l~~al~-------l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 542 (553)
++|++|...|..++. .+++ ... -..++.+..++-.+--+++..
T Consensus 20 ~~y~eA~~~Y~~~i~~~~~~~k~e~~--~~~---k~~ir~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 20 GDYEAAFEFYRAGVDLLLKGVQGDSS--PER---REAVKRKIAEYLKRAEEILRL 69 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCC--HHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555554 4544 112 233455555554444444433
No 441
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.86 E-value=2.3e+02 Score=28.18 Aligned_cols=106 Identities=13% Similarity=0.190 Sum_probs=65.3
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH--HHHHHHHHh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS--IEACNKVLD 475 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A--~~~~~~al~ 475 (553)
++.=...|-.++...+|.-|...|-+|++-+.....+ .+.+..+ -|.-++... ++.-++. +-....+++
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d----~kAc~sL---kYmlLSkIM--lN~~~evk~vl~~K~t~~ 276 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD----VKACVSL---KYMLLSKIM--LNRREEVKAVLRNKNTLK 276 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccch----HHHHHHH---HHHHHHHHH--HhhHHHHHHHHccchhHh
Confidence 3334466778888899999999999999865443322 1222211 133333333 3333332 222333444
Q ss_pred -hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 008788 476 -ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 476 -~dp~n~ka~~r~g~a~~~--lg~~~~A~~~l~~al~l~P 512 (553)
.+.....|+...+.+|.. +.+|..|++.|..-+.-||
T Consensus 277 ~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 277 HYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred hhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 566778888888888764 6789999999987776554
No 442
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=40.72 E-value=1.3e+02 Score=31.01 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 461 ~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
...-+|+...+.++..+|.|......+.+.|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3467888888999999999999999999999999999999988853
No 443
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.28 E-value=61 Score=33.02 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (553)
+-..+..+...|+.++..++|..|...|..|..++.......-.+ ....++..|..++++.++...
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e-------~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLE-------TFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 455788899999999999999999999999999766544221111 123445556666666554443
No 444
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=40.13 E-value=1.6e+02 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~ 496 (553)
...+..|+..+-.|+|..|.+...++-+..+...-+|.--|+|-...||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3445556666667777777777777766655444455555555555543
No 445
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.10 E-value=3.7e+02 Score=30.93 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=63.1
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN----P 478 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d----p 478 (553)
-+|.....+++++.|+..-+.|+..+...... .+..++.+++.++.-.|++.+|+.+...+.++. .
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~ 532 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV 532 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc
Confidence 34556667788999999999998855433222 236789999999999999999999999998873 2
Q ss_pred C--CHHHHHHHHHHHHHcCC
Q 008788 479 A--HVKGLYRRGMAYMALGE 496 (553)
Q Consensus 479 ~--n~ka~~r~g~a~~~lg~ 496 (553)
. ..-+.+.++.++...|+
T Consensus 533 ~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 2 24456677888889993
No 446
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=40.08 E-value=1.1e+02 Score=30.30 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=51.7
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
...+.+....+...++++.++...++-+. .+|.+ ..+|..+-..|++.|+...|+..|.+.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~-----------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE----LDPYD-----------EPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 55566777888888889999988888777 78877 356777788899999999999999886653
No 447
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=39.83 E-value=36 Score=25.02 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.0
Q ss_pred hHHhhcCCCCCCcEEEEEEcC
Q 008788 91 GLLEGIPTMLKGEVSMFKMKP 111 (553)
Q Consensus 91 g~~~~l~~m~~G~~~~~~ip~ 111 (553)
-+..++..|+.||++.++..+
T Consensus 36 El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 36 ELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHhhcCceeEEEEec
Confidence 688999999999999998875
No 448
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=39.50 E-value=2.6e+02 Score=29.84 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=39.3
Q ss_pred cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008788 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488 (553)
Q Consensus 409 ~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g 488 (553)
...|+...|-+....+|+ ..|.+. ..-.-.+..+-.+|.|+.|.+...-+-.+-..-.+++--+-
T Consensus 300 ~~~gd~~aas~~~~~~lr----~~~~~p-----------~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~ 364 (831)
T PRK15180 300 LADGDIIAASQQLFAALR----NQQQDP-----------VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL 364 (831)
T ss_pred hhccCHHHHHHHHHHHHH----hCCCCc-----------hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH
Confidence 344566666665555555 333331 12222344444555555555554444433333344444444
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 008788 489 MAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 489 ~a~~~lg~~~~A~~~l~~al 508 (553)
..++.|++|++|...-.-.|
T Consensus 365 r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 365 RSLHGLARWREALSTAEMML 384 (831)
T ss_pred HhhhchhhHHHHHHHHHHHh
Confidence 44555555555554444333
No 449
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=39.40 E-value=62 Score=30.28 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=39.8
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (553)
-....|.. |-..+-.+|+..|.++|+....-+..+ ..++.-||..+.++++++.|-
T Consensus 143 lq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 143 LQYALATY-YTKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhh
Confidence 33344443 446778999999999999544322222 568889999999999999874
No 450
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=39.24 E-value=1.3e+02 Score=32.73 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=43.6
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 008788 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520 (553)
Q Consensus 459 kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~ 520 (553)
....|..|+..|.+. .-+-.-+|...|.|+.+.++|..|+.-|++|+++--.+-+++..
T Consensus 568 e~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~ 626 (1141)
T KOG1811|consen 568 EAERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIF 626 (1141)
T ss_pred HHHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHH
Confidence 345677777777553 22345688889999999999999999999999997554444433
No 451
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.81 E-value=2.6e+02 Score=32.85 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKG-------LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATA 520 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka-------~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~--~~~~~ 520 (553)
|+--|++|.++++|.+-++.+..|++.-|+.+-. .||+=.+.... ...|....--|+...|.+. ...++
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSREEEK 632 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccchHHHH
Confidence 7788999999999999999999999999987654 45554444433 3457777888888899742 22334
Q ss_pred HHHHHHHH
Q 008788 521 ALSKLKKQ 528 (553)
Q Consensus 521 ~l~~l~~~ 528 (553)
.++.++.+
T Consensus 633 ~~~~~~~~ 640 (932)
T PRK13184 633 FLEILYHK 640 (932)
T ss_pred HHHHHHhh
Confidence 44444443
No 452
>PRK10869 recombination and repair protein; Provisional
Probab=38.80 E-value=2.9e+02 Score=30.34 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 465 ~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.|+.....+-.+||.-....-++-.++..+.+....+..|..-+..||.
T Consensus 248 ~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~ 296 (553)
T PRK10869 248 SAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPN 296 (553)
T ss_pred HHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 4555555555667766667777888888888877777777777777774
No 453
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=38.75 E-value=82 Score=33.10 Aligned_cols=114 Identities=24% Similarity=0.239 Sum_probs=69.1
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhcc-----------C--CCChhHHH--H----HhhhhhHHHHHHHHHHHH
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-----------N--PQDDEEGK--V----FVGKRNLLHLNVAACLLK 459 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~-----------~--~~~~ee~~--~----~~~~~~~~~~nla~~~~k 459 (553)
......|...+...+|..|+....+||+.+..+ . ....++.+ . +......-++..+.|.
T Consensus 32 ~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl-- 109 (471)
T KOG4459|consen 32 ELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACL-- 109 (471)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHH--
Confidence 344577888888999999999999998864321 1 11111100 0 0001112233344443
Q ss_pred cCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 460 LGECRKSIEACNKVLDANPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 460 l~~~~~A~~~~~~al~~dp~n----------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
.-|...+.-.+.. -..|-++=.||++.|++..|++.-...+--+|+++ +++..+.
T Consensus 110 --------~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde-~ik~~ld 174 (471)
T KOG4459|consen 110 --------RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDE-DIKQNLD 174 (471)
T ss_pred --------HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHH-HHHHHHH
Confidence 3444444333322 35677788999999999999999998888899864 4554443
No 454
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.39 E-value=1.4e+02 Score=23.21 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=7.4
Q ss_pred HcCCHHHHHHHHHHHH
Q 008788 493 ALGEFEEAQRDFEMMM 508 (553)
Q Consensus 493 ~lg~~~~A~~~l~~al 508 (553)
..|+|++|+.+|+.++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 18 QEGRYSEAVFYYKEAA 33 (76)
T ss_pred HccCHHHHHHHHHHHH
Confidence 3444444444444443
No 455
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=38.33 E-value=50 Score=19.52 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
|+.+-.+|.+.+++++|.+.+++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4445555556666666666665543
No 456
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.20 E-value=1.2e+02 Score=33.97 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 008788 460 LGECRKSIEACNKVLDANPAHVKGLY-RRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 460 l~~~~~A~~~~~~al~~dp~n~ka~~-r~g~a~~~lg~~~~A~~~l~~a 507 (553)
.++|++|+...+..-.. +-...|| ..+.-|..+|+|+-|.+.|.++
T Consensus 745 akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 44566555554433222 2222333 3477777888888888776544
No 457
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=38.11 E-value=1.3e+02 Score=29.88 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
.|.+...+.+|...|.+.+|....++++.++|-+. ..++.|..+-..+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e-~~nk~lm~~la~~ 326 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE-QDNKGLMASLATL 326 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh-HHHHHHHHHHHHh
Confidence 46677789999999999999999999999999874 4555555544433
No 458
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=37.79 E-value=3e+02 Score=24.54 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
..+.....+.+...+..++.......--+.|+++..-.--|..|+..|+|.+|+..|+....-.+.. +-.+..+..|.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~ 89 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHH
Confidence 3445555666668888888888777777789888888888999999999999999998887766653 445555555555
Q ss_pred H
Q 008788 528 Q 528 (553)
Q Consensus 528 ~ 528 (553)
.
T Consensus 90 a 90 (153)
T TIGR02561 90 A 90 (153)
T ss_pred h
Confidence 3
No 459
>PF12854 PPR_1: PPR repeat
Probab=37.16 E-value=89 Score=19.68 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFE 505 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~ 505 (553)
|.-.|-.+-.+|.+.|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455556666666666666666655
No 460
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.87 E-value=64 Score=33.48 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHH-
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSE-PDATAALSKLKK- 527 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P~~~-~~~~~~l~~l~~- 527 (553)
+..|.+|+.+++|.+|++.+..+|-.=..--+.+-+++.++...+ +++.-.+.+..|+.+.|... ..+...|+.+--
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d 355 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGD 355 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcc
Confidence 567888888899999998888877653222223334455555554 56667777888888888642 123333333311
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 008788 528 QRRKLKVRLENSLKGCLTRSL 548 (553)
Q Consensus 528 ~~~~~~~~~~~~~~~mf~~~~ 548 (553)
++-...+..-+.|+.||.-+-
T Consensus 356 ~ml~mqng~~q~~ks~f~y~c 376 (525)
T KOG3677|consen 356 KMLPMQNGDPQVFKSLFSYLC 376 (525)
T ss_pred hhhhhhcCChHHHHHHHHHcC
Confidence 111222334567777776543
No 461
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.57 E-value=1.8e+02 Score=26.68 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 008788 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL 494 (553)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~l 494 (553)
.+++.+.-.|+++.+|.|+|..|...|.++.. |...+.....|+++.+.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 34577888899999999999999999999887 777788888888877654
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.53 E-value=3.8e+02 Score=26.13 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=47.0
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLD 475 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al~ 475 (553)
..+.+.+-+..+++.+++.-|...-.--++.+.......+++. ..+++.+...+.. -.+-....++|++
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~----------~~rl~~l~~~~~~~~p~r~~fi~~ai~ 78 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEES----------IARLIELISLFPPEEPERKKFIKAAIK 78 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHH----------HHHHHHHHHHS-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 3444556666677888888887776555555544322211111 1223333322221 1112222223332
Q ss_pred h------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 476 A------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505 (553)
Q Consensus 476 ~------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~ 505 (553)
- .-.++..+...|..+.+.++|.+|+.+|-
T Consensus 79 WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 79 WSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 1 12456677777777777777777777663
No 463
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=36.30 E-value=4.9e+02 Score=26.73 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+-|+|+.|..+...++|-+|+..|+.|+.
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34577777777777788888888887765
No 464
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.25 E-value=43 Score=30.92 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=28.9
Q ss_pred EEEEEEEEEEecCCCcEEEeccCCC---CCCCeEEEeCCCCchhHHHHHH
Q 008788 291 LLCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMCV 337 (553)
Q Consensus 291 ~V~v~y~~~~~~~~g~~~~~s~~~~---~~~~~~f~lG~~~v~~g~e~~l 337 (553)
.+.+.+.| +|++|+.||.++... +|+.+.| |+|++|++...
T Consensus 134 ~lSMAn~G--pDtNGsQFfItT~~t~wLDGkhVVF----GqVl~Gmdvv~ 177 (217)
T KOG0880|consen 134 RLSMANAG--PDTNGSQFFITTVKTPWLDGKHVVF----GQVLEGMDVVR 177 (217)
T ss_pred eEeeeccC--CCCCCceEEEEecCCccccCceeEE----eeehhhHHHHH
Confidence 34555655 567899999987643 4666666 67999998754
No 465
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=35.62 E-value=3.7e+02 Score=25.01 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL--GEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~l--g~~~~A~~~l~~al~l~P~ 513 (553)
....+.-+..+.+. .+-..|+..|..||..+|-|+.-.+..-+.|.+. .+---.+..|+.++..||.
T Consensus 97 L~~~H~qRV~a~Ln-erkr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~ 165 (193)
T PF12925_consen 97 LVETHQQRVQAMLN-ERKRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPE 165 (193)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHH
Confidence 34556666655544 4557889999999999998988777666555543 4555678899999999996
No 466
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.98 E-value=38 Score=33.72 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=43.0
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN-VAACLLKLGECRKSIEACNKVLDANPAHVKGLY 485 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~n-la~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~ 485 (553)
+.+-|.+--..|.+++. .+|.+-+ +|.. -+.-+.-.++++.|...+.++|+++|++++.|+
T Consensus 119 k~k~y~~~~nI~~~~l~----khP~nvd-----------lWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 119 KKKMYGEMKNIFAECLT----KHPLNVD-----------LWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCCce-----------eeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 33466777777888887 7887733 3322 122334467899999999999999999998654
No 467
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=34.61 E-value=2.2e+02 Score=30.31 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 458 ~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+++|+.+.|.+.+ ...++...|-++|.+.+..|+++-|..+|+++-.
T Consensus 329 l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 3567777666644 2345788999999999999999999999998744
No 468
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=34.21 E-value=6.1e+02 Score=27.17 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR 530 (553)
Q Consensus 464 ~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (553)
.+-++++.+.|-.|..|+-|+-..+.-.+++.+|..|+.++++.-+.+...++ +..++..|-..++
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 824 (831)
T PRK15180 759 YEHLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEP-VTRQISTCITALQ 824 (831)
T ss_pred hhhHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcc-hHHHHHHHHHHHh
Confidence 34567778888899999999988898899999999999999999888754433 5666776655443
No 469
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=33.40 E-value=1.1e+02 Score=18.51 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
.|+.+-.++.+.++++.|.+.++.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666667777777777777666443
No 470
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=32.93 E-value=3.9e+02 Score=25.76 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHH----HhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CC
Q 008788 414 FELAKAKYEKVLRDFNHVNPQDDEEGKV----FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-----------NP 478 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~----~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-----------dp 478 (553)
..+|+-.|-+|+.+|...-..-...+.. -..+......|....++ ..+|.+++.-|+.+-.. .|
T Consensus 69 ~~E~LVLYvKaL~lLa~am~~a~~~w~~~~~~~~~~~~S~~vn~vVqwl-r~rfneclekae~lr~~l~~~~~~l~~~~~ 147 (238)
T PF12063_consen 69 SAEALVLYVKALSLLAKAMDIASAWWYSKNRGSGSLNPSSRVNQVVQWL-RERFNECLEKAEFLRLRLQEAQKQLPDDHP 147 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence 5677777777777664311000011111 01222334445544443 35677777766543211 11
Q ss_pred ---C-----CHHHHHHHHHHH-------HHcC-CHHHHHHHHHHHHH
Q 008788 479 ---A-----HVKGLYRRGMAY-------MALG-EFEEAQRDFEMMMK 509 (553)
Q Consensus 479 ---~-----n~ka~~r~g~a~-------~~lg-~~~~A~~~l~~al~ 509 (553)
. --|..|.+|.-. ...| ++..+...|..|+-
T Consensus 148 ~~~~~~~itAekLiYdrALemsr~AA~~El~g~~~~~ce~~Y~tA~~ 194 (238)
T PF12063_consen 148 SMPSSSGITAEKLIYDRALEMSRTAAVDELFGENLEGCEQRYETAIW 194 (238)
T ss_pred cccCccccCHHHHHHHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHHH
Confidence 1 134566665433 3356 66666666666654
No 471
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.64 E-value=2.8e+02 Score=22.74 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+..++...-..+.+...|+.. |..-+.+.+.|+..|.++.. -+.++|...+..-++
T Consensus 18 l~~~~~~l~~~~~E~~~v~~E----L~~l~~d~~vy~~VG~vfv~-~~~~ea~~~Le~~~e 73 (105)
T cd00632 18 YIVQRQKVEAQLNENKKALEE----LEKLADDAEVYKLVGNVLVK-QEKEEARTELKERLE 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCCcchHHHHhhhHHhh-ccHHHHHHHHHHHHH
Confidence 444444444444444444433 33334689999999999988 677888888876543
No 472
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.20 E-value=96 Score=18.58 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
|+.+-.+|.+.+++++|.+.+.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445556666666666665544
No 473
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=31.95 E-value=2.1e+02 Score=22.37 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=36.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008788 490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGC 543 (553)
Q Consensus 490 a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~m 543 (553)
.+.++..++=|+.++.--|.-.|++. .+....+...+++++..++-.+.|..+
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~-~Al~~y~~~~~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQ-EALEYYNEYSKQRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566677778899999999999974 566667666666655555555555544
No 474
>PHA02872 EFc gene family protein; Provisional
Probab=31.81 E-value=1.3e+02 Score=24.93 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=33.6
Q ss_pred eeeccCCCceEEEEEecCCCCC-CCCCCCCCCEEEEEEEEEEecCCCcEEEe
Q 008788 260 VRDMLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYD 310 (553)
Q Consensus 260 ~~d~~~dg~l~k~il~~G~g~~-~~~~p~~~~~V~v~y~~~~~~~~g~~~~~ 310 (553)
..|.++||...-++++.-.=.. ..-|...|++|+|.| |++ .|.++|+
T Consensus 29 ~n~hTgdg~f~~~~irNi~f~~~~ylca~~gdtvkIYf---lEG-kG~LIfS 76 (124)
T PHA02872 29 ENDHTGDGIFEAITIRNIDFCRPRYLCADAGDTVKIYF---LEG-KGGLIFS 76 (124)
T ss_pred ccCccCCceEEEEEEeccccccceEeeecCCCeEEEEE---Eec-CCcEEEE
Confidence 3678899999988888765332 355778999999987 344 3555554
No 475
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.59 E-value=1e+02 Score=33.59 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+.+++++++.|.+.+. +.++.--|-.+|.+.+..+++..|.++|.+|..+
T Consensus 646 lal~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4567899998877543 3456777888999999999999999999999765
No 476
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=31.23 E-value=3.4e+02 Score=28.56 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=63.0
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH-------HHHHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-------RKSIEACNK 472 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~-------~~A~~~~~~ 472 (553)
.++..|...|-.++|+.|...|+-+.+.+.. |..+ ...+.++--.|+|.+.++.. +....+++.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-----Dkaw----~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN-----DKAW----KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-----chhH----HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 3456888999999999999999998885432 1111 12244555566777766632 132333333
Q ss_pred HHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 473 VLD-----------ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 473 al~-----------~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|+. .-.....+.+..+.++...+.|.+|...+-++...
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 221 11234556677777888888888877777666654
No 477
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=31.16 E-value=2.2e+02 Score=25.91 Aligned_cols=69 Identities=9% Similarity=0.025 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR 546 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (553)
|--..+||+-++-|-..-=...+...++...++||.--.++....+.-+.+.++.+++.+..+++++..
T Consensus 94 PIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~~ 162 (170)
T PLN00122 94 PIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEEA 162 (170)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555443333333444445555566665322333333333333344445555566666543
No 478
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=30.87 E-value=1.8e+02 Score=31.08 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHH
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLDANPAHVKGL 484 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al~~dp~n~ka~ 484 (553)
+.|.+-...|.++|. .+|.+ +.+|.--|.-.+.-+. .+.|.+.+.++|+.+|++++.|
T Consensus 119 ~~~~~v~ki~~~~l~----~Hp~~-----------~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLA----KHPNN-----------PDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred cchhHHHHHHHHHHH----hCCCC-----------chhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 336667777888887 67777 4455444444444443 8899999999999999998754
No 479
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.56 E-value=2.2e+02 Score=20.98 Aligned_cols=59 Identities=27% Similarity=0.356 Sum_probs=37.0
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (553)
..|..+|..|+|-+|-+.....-. ..+.+ +... +..-+..-.|..++++|+...|...+
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~----~~~~~--~~~~---lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWK----AAPGP--ERDF---LQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCC----CT-CC--HHHH---HHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHH----HCCcc--hHHH---HHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 567888999999999988887654 22222 2221 12334455567777888988887653
No 480
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=30.30 E-value=84 Score=21.89 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCC
Q 008788 42 DSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKS 86 (553)
Q Consensus 42 ~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~ 86 (553)
..+++.|+.+.+..+.+..+|..+- +.||.+..|.+
T Consensus 6 aakaK~Ge~I~ltVt~kda~G~pv~---------n~~f~l~r~~~ 41 (47)
T PF05688_consen 6 AAKAKVGETIPLTVTVKDANGNPVP---------NAPFTLTRGDA 41 (47)
T ss_pred hhheecCCeEEEEEEEECCCCCCcC---------CceEEEEecCc
Confidence 4568899999999999988887664 45677777654
No 481
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.19 E-value=1.7e+02 Score=30.42 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
-+..|+|+||-.+++|.+|+.+|.++|.+--+ ..|. +.-...-.|+.|.+..++..+-. ..++-.|+
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~-----k~~~~~~~W~dAcaliQklkes~----~~vr~Rl~ 93 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKM-----KNARKSEMWKDACALIQKLKESK----SSVRHRLN 93 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccc-----cccccchhhHHHHHHHHHHHHHH----HHHHHHHH
Confidence 45678999999999999999999998876321 1110 01111234666666665554322 23555666
Q ss_pred HHHHHHH
Q 008788 524 KLKKQRR 530 (553)
Q Consensus 524 ~l~~~~~ 530 (553)
.|++..+
T Consensus 94 vL~kqkq 100 (560)
T KOG2709|consen 94 VLKKQKQ 100 (560)
T ss_pred HHHhhhc
Confidence 6666443
No 482
>PRK11619 lytic murein transglycosylase; Provisional
Probab=30.17 E-value=3.1e+02 Score=30.83 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=43.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
..+..++|+.+..++...-..........|.+|.++..+|+-++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344788998888777775444456788999999999999999999999998754
No 483
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.57 E-value=4.3e+02 Score=29.19 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=15.0
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLR 426 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~ 426 (553)
++++.|+...+++++..|.+++.+|-+
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 355555555555555555555555544
No 484
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=29.37 E-value=1.9e+02 Score=32.35 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 457 LLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~--dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
++++++|-...+.++.-=.- |..-..|+...|.-+..+.+|++|.++|..+-..+
T Consensus 770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 45778888877766542211 23345678888888888888888888887765443
No 485
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.24 E-value=1.6e+02 Score=26.84 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=26.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHHHHHHHHH
Q 008788 492 MALGEFEEAQRDFEMMMKVDKS---SEPDATAALSKLKKQRRKLKVRLE 537 (553)
Q Consensus 492 ~~lg~~~~A~~~l~~al~l~P~---~~~~~~~~l~~l~~~~~~~~~~~~ 537 (553)
...|+|+.|+.+|.+|..+--+ +.....+.+..+...+.+.++...
T Consensus 97 i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~ 145 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLW 145 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766322 223345555556555555554443
No 486
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.25 E-value=3.1e+02 Score=26.37 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPA-HVKGLYRRGMAYMA-LGEFEEAQRDFEM 506 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~-n~ka~~r~g~a~~~-lg~~~~A~~~l~~ 506 (553)
..+|...-..++|++.+.+..+++..++. +..=..-++.||.. .+....+.+.+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~ 62 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSS 62 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhh
Confidence 34555555666666666666666666543 22223333444432 3444444444443
No 487
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=27.92 E-value=6.8e+02 Score=25.73 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 008788 415 ELAKAKYEKVLRDFNH 430 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~~ 430 (553)
.++...|++|.+.+..
T Consensus 211 ~q~a~~Y~~A~~~l~~ 226 (353)
T cd09243 211 YETAKLFQKADDSLSS 226 (353)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4555667777766544
No 488
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=27.78 E-value=2.3e+02 Score=20.91 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 485 ~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
+..|..++..|+|=+|.+.++.+-...+.
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~ 31 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPG 31 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-C
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCc
Confidence 44566666667777777766666655444
No 489
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.75 E-value=3.3e+02 Score=27.14 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVK-----GLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-n~k-----a~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
..++-|+|..|.+.++-+.+.+.|.+.++.+-. ..| .-.|+|..|....-.++.++...-.++
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iE 183 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIE 183 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999988865421 111 233555555544444444444443333
No 490
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.70 E-value=7.4e+02 Score=26.91 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHh-----------------hccCCCChhHHHHHhhhhhHHHHHH
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF-----------------NHVNPQDDEEGKVFVGKRNLLHLNV 453 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l-----------------~~~~~~~~ee~~~~~~~~~~~~~nl 453 (553)
.+--+..+..-++.+..+-+ .+-+.|...|.+|+.-+ ..+..+-|.-...+.+....+-.++
T Consensus 125 ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~ 203 (711)
T COG1747 125 VEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGR 203 (711)
T ss_pred HHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccch
Q ss_pred HHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHH
Q 008788 454 AACLLK--------LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA--------------------LGEFEEAQRDFE 505 (553)
Q Consensus 454 a~~~~k--------l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~--------------------lg~~~~A~~~l~ 505 (553)
+.+.+. ..+|.+|++.....|+.|..|.+|.-..-.-+.. -.++.+|+.+|.
T Consensus 204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFe 283 (711)
T COG1747 204 GSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFE 283 (711)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHH
Q ss_pred HHHHhCCCC
Q 008788 506 MMMKVDKSS 514 (553)
Q Consensus 506 ~al~l~P~~ 514 (553)
+.+.++..|
T Consensus 284 k~m~f~eGn 292 (711)
T COG1747 284 KLMHFDEGN 292 (711)
T ss_pred HHheeccCc
No 491
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.39 E-value=6e+02 Score=26.38 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHV--KGLYRRGMAYMALG--EFEEAQRDFEMMMKV 510 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~--ka~~r~g~a~~~lg--~~~~A~~~l~~al~l 510 (553)
.....+.-.+..++|..|.+.++..+..-|.+. ..+..++.+|.... +|.+|.+.|+.++..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666677788999999999999888533333 46777778887654 789999999988765
No 492
>PF13041 PPR_2: PPR repeat family
Probab=26.88 E-value=1.5e+02 Score=20.19 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DKS 513 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l--~P~ 513 (553)
|.-.|-.+-.++.+.|++++|.+.|++..+. .|+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 4456667778899999999999999988875 554
No 493
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.62 E-value=1.1e+02 Score=31.34 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDF 504 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l 504 (553)
-+.-.|.-++.+++++.|...+..|..+- -.+..++|..|++++.+++++.++-..
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456677777999999999999998763 356889999999999999998877443
No 494
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=26.49 E-value=3.7e+02 Score=29.19 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+..|+.|-.-+- ..-++++...+.+.+..-|..+.+|-......++.++|+.....|.+||.
T Consensus 20 i~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 20 IDSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 556666654443 34899999999999999999999999999999999999999999999885
No 495
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.45 E-value=1.4e+02 Score=19.00 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 008788 496 EFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 496 ~~~~A~~~l~~al~l~P~ 513 (553)
+++.|+..|++.+...|+
T Consensus 2 E~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE 19 (32)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 456667777777666665
No 496
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=26.02 E-value=6.2e+02 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 008788 482 KGLYRRGMAYMALG-----EFEEAQRDFEMMMKV 510 (553)
Q Consensus 482 ka~~r~g~a~~~lg-----~~~~A~~~l~~al~l 510 (553)
-|+-.++++++.++ +|++|++..+.++.-
T Consensus 177 aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 177 AARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 35666788888888 788999888888764
No 497
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=25.67 E-value=5.8e+02 Score=25.37 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=64.4
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HV 481 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-n~ 481 (553)
+.+..++-..+|..|+...+++++.+....... +......+.+..++.-=-+|+..|++|.+++...-+-...-.+ -+
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~e-e~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAE-EPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 345556678899999999999999764321111 1111122333444443447788899999998887665544322 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
|.+-.--..|.+.++...+.+.-. +---+|+|.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~-~WL~~p~Nq 151 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVAS-AWLQDPSNQ 151 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH-HHHhCcccC
Confidence 544444455667777766554333 333356553
No 498
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=25.55 E-value=1.3e+02 Score=25.13 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=37.2
Q ss_pred CCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc
Q 008788 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (553)
Q Consensus 388 ~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~ 431 (553)
..++...+..|..+...|..+++.|+.+.|--.|.+.+.+++.+
T Consensus 28 ~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 28 NIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 45677788899999999999999999999999999999988443
No 499
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=25.09 E-value=5.2e+02 Score=26.42 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDA----N--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----d--p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+..+-..+...|+..++|.+|+...+..++- | +.-+..+..-.++|+.+.+...|+..+..|--.
T Consensus 127 Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~ 197 (411)
T KOG1463|consen 127 RQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTT 197 (411)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHh
Confidence 4556678889999999999999999887743 2 334566777899999999999999999877654
No 500
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.80 E-value=1.1e+02 Score=31.40 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=62.8
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhh-
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV-LDA- 476 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a-l~~- 476 (553)
..++..++...+.+....-++...+|+..+..... ....++..+.+|.++.++|.-+..+.+.- .++
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-----------qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~ 171 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-----------QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEIC 171 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHhccCcc-----------chhhhHHHHHHHHHHhhcccccCCccchhHHHHh
Confidence 34555566666666666666666666664332111 12457778888888999887776655432 222
Q ss_pred --CCCC-HH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 477 --NPAH-VK----GLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 477 --dp~n-~k----a~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+|.+ +| -+|.-|..+..+++|+.|+.+|..++-
T Consensus 172 ~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 172 KANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred ccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 3322 22 234457788899999999999998864
Done!