Query 008788
Match_columns 553
No_of_seqs 476 out of 4630
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jxv_A 70 kDa peptidyl-prolyl 100.0 8.7E-65 3E-69 519.7 29.6 344 22-382 4-355 (356)
2 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 3E-56 1E-60 474.6 43.1 383 151-548 29-417 (457)
3 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 6E-44 2E-48 379.8 28.8 373 27-503 29-407 (457)
4 1q1c_A FK506-binding protein 4 100.0 7.9E-42 2.7E-46 336.1 29.3 222 27-262 49-277 (280)
5 3jxv_A 70 kDa peptidyl-prolyl 100.0 1.1E-38 3.6E-43 326.5 28.4 228 24-259 122-355 (356)
6 1q1c_A FK506-binding protein 4 100.0 2.2E-38 7.6E-43 311.5 28.7 223 151-387 49-279 (280)
7 2if4_A ATFKBP42; FKBP-like, al 100.0 5E-39 1.7E-43 328.4 23.1 277 266-550 48-332 (338)
8 1p5q_A FKBP52, FK506-binding p 100.0 7.4E-36 2.5E-40 304.7 34.4 275 260-548 18-296 (336)
9 2if4_A ATFKBP42; FKBP-like, al 99.9 3.1E-25 1.1E-29 226.2 15.9 275 152-515 48-333 (338)
10 3o5e_A Peptidyl-prolyl CIS-tra 99.9 1.1E-24 3.7E-29 192.7 14.3 136 1-144 3-142 (144)
11 3kz7_A FK506-binding protein 3 99.9 8.7E-24 3E-28 181.3 14.7 114 27-143 2-118 (119)
12 3o5q_A Peptidyl-prolyl CIS-tra 99.9 1E-23 3.5E-28 182.8 14.7 112 25-144 15-126 (128)
13 1yat_A FK506 binding protein; 99.9 1.2E-23 4.2E-28 178.6 14.5 111 25-143 2-112 (113)
14 1r9h_A FKB-6, FK506 binding pr 99.9 1.2E-23 4.2E-28 183.9 14.2 114 27-148 12-125 (135)
15 2y78_A Peptidyl-prolyl CIS-tra 99.9 3.4E-23 1.2E-27 180.3 15.3 112 23-143 22-133 (133)
16 2f4e_A ATFKBP42; FKBP-like, al 99.9 2E-23 7E-28 191.2 14.5 134 7-147 27-162 (180)
17 2ppn_A FK506-binding protein 1 99.9 3.8E-23 1.3E-27 173.8 14.2 106 30-143 1-106 (107)
18 2lgo_A FKBP; infectious diseas 99.9 4.5E-23 1.5E-27 178.9 12.5 114 22-143 15-130 (130)
19 1jvw_A Macrophage infectivity 99.9 6.6E-23 2.3E-27 184.7 13.5 115 22-146 30-144 (167)
20 4dip_A Peptidyl-prolyl CIS-tra 99.9 1.7E-22 5.9E-27 174.6 15.6 116 22-145 5-123 (125)
21 3b7x_A FK506-binding protein 6 99.9 2.6E-23 8.8E-28 181.6 9.4 116 20-144 17-133 (134)
22 1u79_A FKBP-type peptidyl-prol 99.9 4.5E-23 1.5E-27 179.1 10.6 121 18-143 1-128 (129)
23 1p5q_A FKBP52, FK506-binding p 99.9 1.5E-22 5.1E-27 206.1 15.7 267 149-510 21-294 (336)
24 2vn1_A 70 kDa peptidylprolyl i 99.9 3.8E-22 1.3E-26 173.4 15.4 116 22-145 8-127 (129)
25 2lkn_A AH receptor-interacting 99.9 6E-23 2.1E-27 183.2 9.4 120 25-148 6-161 (165)
26 3uf8_A Ubiquitin-like protein 99.9 4E-22 1.4E-26 186.9 15.0 111 24-143 99-209 (209)
27 1r9h_A FKB-6, FK506 binding pr 99.9 4.6E-22 1.6E-26 173.9 14.1 120 151-271 12-135 (135)
28 3rkv_A Putative peptidylprolyl 99.9 3.6E-22 1.2E-26 180.5 14.0 155 391-546 4-162 (162)
29 1fd9_A Protein (macrophage inf 99.9 3.8E-22 1.3E-26 186.7 14.3 113 22-145 99-211 (213)
30 3oe2_A Peptidyl-prolyl CIS-tra 99.9 4.1E-22 1.4E-26 186.1 13.9 109 22-144 110-218 (219)
31 2lkn_A AH receptor-interacting 99.9 2.5E-22 8.7E-27 179.1 10.7 120 264-387 7-163 (165)
32 2awg_A 38 kDa FK-506 binding p 99.9 9.4E-22 3.2E-26 168.1 13.7 109 24-144 7-117 (118)
33 2jwx_A FKBP38NTD, FK506-bindin 99.9 1.4E-21 4.9E-26 174.0 15.0 110 26-147 39-151 (157)
34 3kz7_A FK506-binding protein 3 99.9 2.2E-21 7.6E-26 166.2 15.0 106 152-257 3-118 (119)
35 1q6h_A FKBP-type peptidyl-prol 99.9 1.9E-21 6.4E-26 183.2 14.5 110 22-143 114-223 (224)
36 2d9f_A FK506-binding protein 8 99.9 1.3E-21 4.5E-26 171.0 11.9 118 19-148 7-126 (135)
37 3o5e_A Peptidyl-prolyl CIS-tra 99.9 4.1E-21 1.4E-25 169.7 15.0 108 151-258 33-142 (144)
38 3o5q_A Peptidyl-prolyl CIS-tra 99.9 5.2E-21 1.8E-25 165.8 14.1 108 151-258 17-126 (128)
39 4dip_A Peptidyl-prolyl CIS-tra 99.9 6.7E-21 2.3E-25 164.6 14.8 111 149-259 8-123 (125)
40 2f4e_A ATFKBP42; FKBP-like, al 99.8 8E-21 2.7E-25 173.9 14.6 126 266-398 48-179 (180)
41 1yat_A FK506 binding protein; 99.8 1.5E-20 5E-25 159.5 14.9 106 152-257 5-112 (113)
42 2ppn_A FK506-binding protein 1 99.8 1.5E-20 5.1E-25 157.9 13.5 104 154-257 1-106 (107)
43 2y78_A Peptidyl-prolyl CIS-tra 99.8 2.2E-20 7.5E-25 162.5 14.7 107 150-257 25-133 (133)
44 2pbc_A FK506-binding protein 2 99.8 2.1E-20 7.2E-25 155.5 13.4 98 41-146 2-99 (102)
45 3b7x_A FK506-binding protein 6 99.8 5.1E-21 1.8E-25 167.0 10.0 116 259-381 18-133 (134)
46 3oe2_A Peptidyl-prolyl CIS-tra 99.8 3.8E-20 1.3E-24 172.9 14.1 104 150-258 114-218 (219)
47 2lgo_A FKBP; infectious diseas 99.8 6.4E-20 2.2E-24 159.0 13.2 107 151-257 20-130 (130)
48 2awg_A 38 kDa FK-506 binding p 99.8 1.6E-19 5.3E-24 154.3 14.4 113 259-381 5-117 (118)
49 2vn1_A 70 kDa peptidylprolyl i 99.8 1.7E-19 5.7E-24 156.7 14.7 117 261-382 10-127 (129)
50 3uf8_A Ubiquitin-like protein 99.8 2.3E-19 7.8E-24 168.1 16.1 108 149-257 100-209 (209)
51 2jwx_A FKBP38NTD, FK506-bindin 99.8 2E-19 6.7E-24 160.2 14.1 115 260-384 36-151 (157)
52 1u79_A FKBP-type peptidyl-prol 99.8 8.1E-20 2.8E-24 158.5 10.7 107 150-257 9-128 (129)
53 2d9f_A FK506-binding protein 8 99.8 1.2E-19 4E-24 158.6 11.6 122 260-391 10-132 (135)
54 1jvw_A Macrophage infectivity 99.8 1.9E-19 6.7E-24 162.0 12.4 108 150-259 34-143 (167)
55 4gco_A Protein STI-1; structur 99.8 1.8E-18 6.2E-23 149.7 16.0 115 395-525 10-124 (126)
56 1fd9_A Protein (macrophage inf 99.8 6.4E-19 2.2E-23 164.8 13.9 107 150-259 103-211 (213)
57 1q6h_A FKBP-type peptidyl-prol 99.8 8E-19 2.7E-23 165.3 14.5 104 151-257 119-223 (224)
58 2hr2_A Hypothetical protein; a 99.8 4.1E-19 1.4E-23 158.0 11.0 139 393-536 6-156 (159)
59 2pbc_A FK506-binding protein 2 99.8 8E-19 2.8E-23 145.9 12.1 94 167-260 4-99 (102)
60 2fbn_A 70 kDa peptidylprolyl i 99.8 7.3E-18 2.5E-22 157.3 17.5 169 375-548 15-188 (198)
61 1ihg_A Cyclophilin 40; ppiase 99.7 1.4E-17 4.9E-22 171.4 16.6 155 390-545 215-370 (370)
62 4gcn_A Protein STI-1; structur 99.7 2.2E-16 7.6E-21 136.6 13.5 115 394-525 4-125 (127)
63 4dt4_A FKBP-type 16 kDa peptid 99.7 6.5E-16 2.2E-20 138.5 16.4 84 44-143 24-107 (169)
64 3upv_A Heat shock protein STI1 99.7 1.1E-15 3.9E-20 131.1 14.3 117 397-529 3-125 (126)
65 2kr7_A FKBP-type peptidyl-prol 99.6 1E-14 3.5E-19 129.3 17.4 83 44-143 6-89 (151)
66 3pr9_A FKBP-type peptidyl-prol 99.6 3E-15 1E-19 132.8 12.8 86 45-143 2-96 (157)
67 3gyz_A Chaperone protein IPGC; 99.6 8.7E-15 3E-19 130.6 15.5 104 396-514 34-137 (151)
68 3sz7_A HSC70 cochaperone (SGT) 99.6 9.1E-15 3.1E-19 131.8 15.2 125 395-534 8-133 (164)
69 1hxv_A Trigger factor; FKBP fo 99.6 6E-16 2E-20 130.1 6.5 82 45-143 30-112 (113)
70 2kfw_A FKBP-type peptidyl-prol 99.6 6.4E-15 2.2E-19 135.4 13.0 82 45-143 3-84 (196)
71 2k8i_A SLYD, peptidyl-prolyl C 99.6 1E-14 3.5E-19 131.4 13.6 71 169-239 3-73 (171)
72 1ix5_A FKBP; ppiase, isomerase 99.6 1.2E-15 4.1E-20 135.2 6.7 87 45-143 2-97 (151)
73 1hxv_A Trigger factor; FKBP fo 99.6 3E-15 1E-19 125.8 7.5 84 167-257 28-112 (113)
74 2k8i_A SLYD, peptidyl-prolyl C 99.6 1.7E-14 5.8E-19 130.0 12.6 70 45-119 3-72 (171)
75 2xcb_A PCRH, regulatory protei 99.6 6.1E-14 2.1E-18 123.3 15.1 122 396-533 16-137 (142)
76 2vgx_A Chaperone SYCD; alterna 99.5 5.8E-14 2E-18 124.7 14.3 117 396-528 19-135 (148)
77 3prb_A FKBP-type peptidyl-prol 99.5 1.4E-14 4.8E-19 136.1 10.1 74 45-119 2-84 (231)
78 3q49_B STIP1 homology and U bo 99.5 5.7E-14 1.9E-18 121.8 13.3 120 398-533 9-133 (137)
79 3prb_A FKBP-type peptidyl-prol 99.5 3.3E-14 1.1E-18 133.6 10.9 69 169-238 2-84 (231)
80 2kr7_A FKBP-type peptidyl-prol 99.5 4.7E-13 1.6E-17 118.5 17.8 84 167-257 5-89 (151)
81 3cgm_A SLYD, peptidyl-prolyl C 99.5 3.2E-13 1.1E-17 120.2 15.8 77 45-143 3-79 (158)
82 4ga2_A E3 SUMO-protein ligase 99.5 1.2E-13 4E-18 123.0 12.4 113 397-525 30-143 (150)
83 4dt4_A FKBP-type 16 kDa peptid 99.5 3.9E-13 1.3E-17 120.4 14.6 83 168-257 24-107 (169)
84 3pr9_A FKBP-type peptidyl-prol 99.5 3.9E-14 1.3E-18 125.7 7.1 71 169-240 2-86 (157)
85 1elw_A TPR1-domain of HOP; HOP 99.5 1.2E-12 4.1E-17 109.2 14.5 114 397-526 3-116 (118)
86 1a17_A Serine/threonine protei 99.4 6.1E-12 2.1E-16 112.1 18.8 119 391-525 6-124 (166)
87 1hxi_A PEX5, peroxisome target 99.4 5.7E-13 1.9E-17 113.9 10.6 99 401-514 20-118 (121)
88 4ga2_A E3 SUMO-protein ligase 99.4 1.9E-13 6.6E-18 121.6 7.9 110 404-529 3-112 (150)
89 3urz_A Uncharacterized protein 99.4 2.5E-12 8.4E-17 120.8 15.7 123 398-525 4-131 (208)
90 2kfw_A FKBP-type peptidyl-prol 99.4 4.7E-13 1.6E-17 123.0 9.9 72 169-240 3-74 (196)
91 1ix5_A FKBP; ppiase, isomerase 99.4 1.8E-13 6.2E-18 121.2 6.8 73 169-241 2-88 (151)
92 2vyi_A SGTA protein; chaperone 99.4 9.7E-12 3.3E-16 105.5 16.9 120 392-527 6-125 (131)
93 1zu2_A Mitochondrial import re 99.4 7.3E-13 2.5E-17 117.4 10.0 104 410-529 14-138 (158)
94 2dba_A Smooth muscle cell asso 99.4 4.4E-12 1.5E-16 110.8 15.0 117 397-526 27-143 (148)
95 2lni_A Stress-induced-phosphop 99.4 3.1E-12 1E-16 109.4 13.6 114 397-526 15-128 (133)
96 1elr_A TPR2A-domain of HOP; HO 99.4 3.7E-12 1.3E-16 108.3 13.8 118 397-531 3-127 (131)
97 4gyw_A UDP-N-acetylglucosamine 99.4 2.8E-12 9.4E-17 142.7 16.1 104 396-514 7-110 (723)
98 2c2l_A CHIP, carboxy terminus 99.4 3E-12 1E-16 126.3 14.2 102 398-514 4-105 (281)
99 2xev_A YBGF; tetratricopeptide 99.4 6.5E-12 2.2E-16 107.4 14.5 114 400-526 4-120 (129)
100 3cgm_A SLYD, peptidyl-prolyl C 99.4 1.4E-11 4.6E-16 109.6 14.8 78 169-258 3-80 (158)
101 1wao_1 Serine/threonine protei 99.3 9.7E-12 3.3E-16 132.2 14.5 116 396-527 4-119 (477)
102 2pl2_A Hypothetical conserved 99.3 1E-11 3.6E-16 117.3 13.2 100 400-514 7-117 (217)
103 4i17_A Hypothetical protein; T 99.3 2.3E-11 7.8E-16 115.2 15.0 102 399-515 8-110 (228)
104 2h6f_A Protein farnesyltransfe 99.3 1.2E-11 4E-16 127.6 13.9 115 398-528 131-246 (382)
105 4gyw_A UDP-N-acetylglucosamine 99.3 1.1E-11 3.8E-16 137.8 14.7 114 398-527 43-156 (723)
106 3urz_A Uncharacterized protein 99.3 2.3E-11 7.7E-16 114.2 14.7 110 403-529 59-203 (208)
107 3k9i_A BH0479 protein; putativ 99.3 3.9E-12 1.3E-16 107.6 8.0 94 410-515 2-95 (117)
108 1na0_A Designed protein CTPR3; 99.3 1.2E-10 4.3E-15 97.7 16.2 113 398-526 9-121 (125)
109 2h6f_A Protein farnesyltransfe 99.3 2.4E-11 8.1E-16 125.3 14.0 118 396-529 95-213 (382)
110 2kck_A TPR repeat; tetratricop 99.3 2.7E-11 9.3E-16 99.9 11.5 100 400-514 8-110 (112)
111 2pl2_A Hypothetical conserved 99.3 5.9E-11 2E-15 112.1 15.1 115 398-529 39-164 (217)
112 3vtx_A MAMA; tetratricopeptide 99.3 2.5E-11 8.5E-16 110.8 11.7 112 398-513 39-173 (184)
113 3vtx_A MAMA; tetratricopeptide 99.2 1.5E-10 5.1E-15 105.5 15.5 141 398-544 5-168 (184)
114 2e2e_A Formate-dependent nitri 99.2 1.4E-10 4.7E-15 105.3 14.6 103 398-515 44-149 (177)
115 1w26_A Trigger factor, TF; cha 99.2 2.4E-11 8.3E-16 126.4 10.1 87 45-147 158-244 (432)
116 4i17_A Hypothetical protein; T 99.2 2.3E-10 7.8E-15 108.3 15.5 112 399-526 43-163 (228)
117 3ieg_A DNAJ homolog subfamily 99.2 2.7E-10 9.1E-15 114.3 16.4 122 400-533 236-357 (359)
118 2l6j_A TPR repeat-containing p 99.2 1E-11 3.5E-16 102.9 3.9 95 397-506 3-103 (111)
119 2gw1_A Mitochondrial precursor 99.2 3.1E-10 1.1E-14 120.2 16.0 117 394-526 2-118 (514)
120 3uq3_A Heat shock protein STI1 99.2 2.8E-10 9.7E-15 108.7 13.9 112 397-524 138-255 (258)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.5E-10 8.5E-15 106.5 12.9 101 399-514 38-154 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.6E-10 1.2E-14 105.4 13.9 102 396-515 4-105 (213)
123 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.1E-09 3.7E-14 105.9 17.5 105 396-515 41-145 (275)
124 3gyz_A Chaperone protein IPGC; 99.1 9.4E-11 3.2E-15 104.3 8.3 84 447-531 36-119 (151)
125 4gco_A Protein STI-1; structur 99.1 4.7E-10 1.6E-14 96.3 12.3 84 447-531 13-96 (126)
126 1t11_A Trigger factor, TF; hel 99.1 5.5E-11 1.9E-15 122.0 7.1 90 45-150 161-250 (392)
127 2kat_A Uncharacterized protein 99.1 9.7E-10 3.3E-14 92.1 13.6 83 416-513 3-85 (115)
128 2vsy_A XCC0866; transferase, g 99.1 5.3E-10 1.8E-14 121.3 14.8 116 398-529 23-138 (568)
129 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.5E-09 5.1E-14 102.8 16.0 106 398-515 4-130 (225)
130 4abn_A Tetratricopeptide repea 99.1 6.4E-10 2.2E-14 118.1 14.7 117 399-531 171-307 (474)
131 1w26_A Trigger factor, TF; cha 99.1 2.4E-10 8.3E-15 118.8 10.8 86 167-258 156-241 (432)
132 3qky_A Outer membrane assembly 99.1 2.3E-09 8E-14 103.7 16.1 106 398-515 15-131 (261)
133 2fo7_A Synthetic consensus TPR 99.1 2E-09 6.8E-14 91.2 13.6 111 400-526 3-113 (136)
134 3uq3_A Heat shock protein STI1 99.1 2.2E-09 7.4E-14 102.4 15.4 102 396-513 3-111 (258)
135 4abn_A Tetratricopeptide repea 99.1 1.2E-09 4.2E-14 115.9 14.8 115 398-529 102-226 (474)
136 3qky_A Outer membrane assembly 99.1 3.6E-09 1.2E-13 102.3 16.8 105 398-514 52-181 (261)
137 2e2e_A Formate-dependent nitri 99.1 5E-10 1.7E-14 101.5 9.9 129 401-546 13-144 (177)
138 3as5_A MAMA; tetratricopeptide 99.1 3.6E-09 1.2E-13 95.2 15.6 116 398-529 42-157 (186)
139 2y4t_A DNAJ homolog subfamily 99.0 3E-09 1E-13 110.9 16.8 119 400-530 259-377 (450)
140 3fp2_A TPR repeat-containing p 99.0 1E-09 3.6E-14 117.1 13.5 113 387-515 14-126 (537)
141 2vgx_A Chaperone SYCD; alterna 99.0 4.1E-10 1.4E-14 99.7 8.5 81 447-528 21-101 (148)
142 2pzi_A Probable serine/threoni 99.0 3.4E-10 1.2E-14 125.7 8.8 105 402-523 471-575 (681)
143 3ieg_A DNAJ homolog subfamily 99.0 3.6E-09 1.2E-13 106.0 15.3 109 398-522 3-114 (359)
144 2fo7_A Synthetic consensus TPR 99.0 3.6E-09 1.2E-13 89.6 12.8 100 399-513 36-135 (136)
145 2pzi_A Probable serine/threoni 99.0 5.4E-10 1.9E-14 124.1 9.6 115 399-530 434-548 (681)
146 3as5_A MAMA; tetratricopeptide 99.0 3.1E-09 1.1E-13 95.6 13.0 114 397-526 7-120 (186)
147 4eqf_A PEX5-related protein; a 99.0 2E-09 6.8E-14 109.2 13.0 102 398-514 213-314 (365)
148 2q7f_A YRRB protein; TPR, prot 99.0 7E-09 2.4E-13 98.1 15.5 102 398-514 57-158 (243)
149 2q7f_A YRRB protein; TPR, prot 99.0 2.4E-09 8.1E-14 101.4 11.7 114 397-526 22-135 (243)
150 4eqf_A PEX5-related protein; a 99.0 3.4E-09 1.2E-13 107.4 13.6 111 404-528 183-293 (365)
151 3mkr_A Coatomer subunit epsilo 99.0 8.8E-09 3E-13 101.9 16.1 69 447-515 200-269 (291)
152 1fch_A Peroxisomal targeting s 99.0 3.3E-09 1.1E-13 107.3 13.3 102 398-514 217-318 (368)
153 3u4t_A TPR repeat-containing p 99.0 3.2E-09 1.1E-13 102.6 12.6 118 401-523 6-149 (272)
154 3ma5_A Tetratricopeptide repea 99.0 3.5E-09 1.2E-13 86.7 10.7 67 447-513 7-73 (100)
155 2y4t_A DNAJ homolog subfamily 99.0 1.2E-08 4E-13 106.4 17.4 104 396-514 24-127 (450)
156 1hxi_A PEX5, peroxisome target 99.0 1.2E-08 4.2E-13 86.6 14.3 97 449-547 19-115 (121)
157 3mkr_A Coatomer subunit epsilo 99.0 6.6E-09 2.2E-13 102.8 14.3 110 398-525 130-243 (291)
158 4gcn_A Protein STI-1; structur 99.0 3E-09 1E-13 91.3 10.4 68 447-514 8-75 (127)
159 3qou_A Protein YBBN; thioredox 98.9 6.6E-09 2.2E-13 102.5 13.8 117 398-529 117-268 (287)
160 2xcb_A PCRH, regulatory protei 98.9 2E-09 7E-14 94.0 9.0 81 447-528 18-98 (142)
161 2ho1_A Type 4 fimbrial biogene 98.9 1E-08 3.5E-13 97.9 14.6 79 447-526 141-219 (252)
162 1pc2_A Mitochondria fission pr 98.9 6.5E-09 2.2E-13 91.0 11.8 102 412-529 12-118 (152)
163 1na3_A Designed protein CTPR2; 98.9 1.4E-08 4.7E-13 80.5 12.9 78 447-525 9-86 (91)
164 1w3b_A UDP-N-acetylglucosamine 98.9 1E-08 3.6E-13 104.9 15.4 78 447-525 237-314 (388)
165 2vq2_A PILW, putative fimbrial 98.9 1.3E-08 4.6E-13 94.7 14.9 77 448-525 77-156 (225)
166 1fch_A Peroxisomal targeting s 98.9 8.7E-09 3E-13 104.1 14.7 101 400-515 66-166 (368)
167 3hym_B Cell division cycle pro 98.9 6.2E-09 2.1E-13 103.1 13.3 121 398-525 193-313 (330)
168 3cv0_A Peroxisome targeting si 98.9 1.1E-08 3.7E-13 101.2 15.1 101 398-513 172-272 (327)
169 2r5s_A Uncharacterized protein 98.9 9E-09 3.1E-13 93.4 13.1 113 401-528 9-156 (176)
170 3upv_A Heat shock protein STI1 98.9 1E-08 3.4E-13 87.2 12.5 82 447-529 4-85 (126)
171 3u4t_A TPR repeat-containing p 98.9 9.5E-09 3.2E-13 99.2 13.8 113 398-526 74-186 (272)
172 2vq2_A PILW, putative fimbrial 98.9 1.7E-08 5.8E-13 94.0 15.1 80 447-527 113-193 (225)
173 2kc7_A BFR218_protein; tetratr 98.9 9.4E-10 3.2E-14 89.4 5.5 65 451-515 4-69 (99)
174 2ho1_A Type 4 fimbrial biogene 98.9 8.5E-09 2.9E-13 98.4 13.0 123 398-525 37-184 (252)
175 1t11_A Trigger factor, TF; hel 98.9 8.6E-10 2.9E-14 113.2 6.2 86 167-258 159-244 (392)
176 1w3b_A UDP-N-acetylglucosamine 98.9 1.5E-08 5E-13 103.7 15.5 110 400-525 171-280 (388)
177 2l6j_A TPR repeat-containing p 98.9 1.6E-08 5.5E-13 83.3 12.5 68 447-514 4-71 (111)
178 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-08 4.7E-13 96.1 13.6 139 398-549 41-216 (225)
179 1qqe_A Vesicular transport pro 98.9 8.3E-09 2.8E-13 101.9 12.4 110 397-515 76-192 (292)
180 1xnf_A Lipoprotein NLPI; TPR, 98.9 1.7E-08 5.8E-13 97.4 14.2 114 403-528 10-123 (275)
181 3n71_A Histone lysine methyltr 98.9 2.6E-08 8.8E-13 105.6 16.2 116 391-514 302-431 (490)
182 1na3_A Designed protein CTPR2; 98.9 1.6E-08 5.4E-13 80.1 11.0 84 397-495 8-91 (91)
183 3hym_B Cell division cycle pro 98.9 2.2E-08 7.6E-13 99.1 14.4 114 399-528 91-205 (330)
184 1qqe_A Vesicular transport pro 98.9 7.2E-09 2.5E-13 102.4 10.6 108 398-514 117-232 (292)
185 3sz7_A HSC70 cochaperone (SGT) 98.9 2.1E-08 7.2E-13 89.6 12.4 82 447-529 11-92 (164)
186 3edt_B KLC 2, kinesin light ch 98.8 1.6E-08 5.4E-13 97.5 12.1 108 396-510 41-156 (283)
187 3u3w_A Transcriptional activat 98.8 1.5E-08 5.3E-13 99.9 11.8 107 397-511 154-267 (293)
188 2vsy_A XCC0866; transferase, g 98.8 2.3E-08 7.8E-13 108.4 13.8 102 398-514 57-161 (568)
189 4g1t_A Interferon-induced prot 98.8 3.2E-08 1.1E-12 103.9 13.9 121 398-525 51-181 (472)
190 3cv0_A Peroxisome targeting si 98.8 3.3E-08 1.1E-12 97.7 13.3 103 398-515 21-123 (327)
191 2hr2_A Hypothetical protein; a 98.8 2.4E-08 8.2E-13 88.5 10.8 72 447-519 11-101 (159)
192 2kc7_A BFR218_protein; tetratr 98.8 3.8E-08 1.3E-12 79.7 11.3 61 446-514 33-94 (99)
193 2ifu_A Gamma-SNAP; membrane fu 98.8 3.3E-08 1.1E-12 98.3 12.9 107 397-514 115-227 (307)
194 3fp2_A TPR repeat-containing p 98.8 5.4E-08 1.9E-12 103.6 15.1 127 397-528 242-390 (537)
195 1a17_A Serine/threonine protei 98.8 5.1E-08 1.7E-12 86.3 11.5 98 398-510 47-146 (166)
196 3q49_B STIP1 homology and U bo 98.7 8.9E-08 3E-12 82.1 12.5 82 447-529 9-90 (137)
197 3ro3_A PINS homolog, G-protein 98.7 6.3E-08 2.1E-12 84.6 11.7 109 395-512 6-120 (164)
198 3edt_B KLC 2, kinesin light ch 98.7 4.9E-08 1.7E-12 94.0 11.9 108 396-510 83-198 (283)
199 3qww_A SET and MYND domain-con 98.7 1.3E-07 4.3E-12 98.6 15.3 121 393-522 293-427 (433)
200 2kck_A TPR repeat; tetratricop 98.7 4.8E-08 1.7E-12 79.9 9.6 101 447-549 6-109 (112)
201 3q15_A PSP28, response regulat 98.7 7E-08 2.4E-12 98.7 12.5 109 396-513 180-293 (378)
202 2xpi_A Anaphase-promoting comp 98.7 1.7E-07 5.7E-12 101.4 15.8 115 401-524 478-592 (597)
203 2gw1_A Mitochondrial precursor 98.7 6.4E-08 2.2E-12 102.3 12.0 114 402-525 376-492 (514)
204 2ifu_A Gamma-SNAP; membrane fu 98.7 3.2E-08 1.1E-12 98.4 8.9 108 397-514 75-188 (307)
205 2qfc_A PLCR protein; TPR, HTH, 98.7 5.5E-08 1.9E-12 95.9 10.5 107 397-511 154-267 (293)
206 3ulq_A Response regulator aspa 98.7 1.1E-07 3.7E-12 97.3 13.0 108 396-512 182-295 (383)
207 3u3w_A Transcriptional activat 98.7 8.5E-08 2.9E-12 94.5 11.3 107 398-513 115-228 (293)
208 3qwp_A SET and MYND domain-con 98.7 2.1E-07 7.1E-12 97.1 14.5 124 397-529 286-423 (429)
209 3ro3_A PINS homolog, G-protein 98.7 1.4E-07 4.9E-12 82.3 11.4 108 397-513 48-161 (164)
210 4a1s_A PINS, partner of inscut 98.7 1.1E-07 3.9E-12 97.6 12.3 106 395-511 45-156 (411)
211 3nf1_A KLC 1, kinesin light ch 98.7 1E-07 3.4E-12 93.4 11.3 110 397-513 152-310 (311)
212 3rkv_A Putative peptidylprolyl 98.6 1.4E-07 4.7E-12 84.0 10.7 80 447-527 11-108 (162)
213 2qfc_A PLCR protein; TPR, HTH, 98.6 3.4E-07 1.2E-11 90.1 14.6 105 399-512 116-227 (293)
214 3ulq_A Response regulator aspa 98.6 2.1E-07 7.2E-12 95.2 13.4 107 396-510 141-253 (383)
215 1wao_1 Serine/threonine protei 98.6 2E-08 6.9E-13 106.6 5.8 102 398-514 40-154 (477)
216 1elw_A TPR1-domain of HOP; HOP 98.6 3.5E-07 1.2E-11 75.4 12.3 97 447-545 4-100 (118)
217 3gw4_A Uncharacterized protein 98.6 1.3E-07 4.6E-12 86.7 10.4 106 397-511 25-137 (203)
218 2xev_A YBGF; tetratricopeptide 98.6 3.6E-07 1.2E-11 77.3 12.1 79 449-527 4-87 (129)
219 2xpi_A Anaphase-promoting comp 98.6 3.5E-07 1.2E-11 98.9 15.0 112 398-525 373-484 (597)
220 2ond_A Cleavage stimulation fa 98.6 3.3E-07 1.1E-11 90.9 13.6 87 414-514 80-167 (308)
221 2lni_A Stress-induced-phosphop 98.6 2.6E-07 9E-12 78.1 11.1 82 447-529 16-97 (133)
222 3nf1_A KLC 1, kinesin light ch 98.6 1.6E-07 5.4E-12 92.0 10.6 108 396-510 67-182 (311)
223 2c2l_A CHIP, carboxy terminus 98.6 8.5E-08 2.9E-12 94.2 8.6 130 398-543 38-196 (281)
224 3ro2_A PINS homolog, G-protein 98.6 2.7E-07 9.3E-12 90.8 12.0 105 398-513 5-115 (338)
225 1dce_A Protein (RAB geranylger 98.6 5.5E-07 1.9E-11 97.4 15.2 114 399-528 64-190 (567)
226 3bee_A Putative YFRE protein; 98.6 6.5E-07 2.2E-11 72.1 11.7 67 447-513 6-75 (93)
227 2fbn_A 70 kDa peptidylprolyl i 98.6 1.5E-07 5.1E-12 86.8 8.9 97 398-509 88-185 (198)
228 2ond_A Cleavage stimulation fa 98.5 5.7E-07 2E-11 89.2 13.0 108 403-525 139-250 (308)
229 3q15_A PSP28, response regulat 98.5 3.3E-07 1.1E-11 93.6 11.6 125 395-528 138-273 (378)
230 3sf4_A G-protein-signaling mod 98.5 3.9E-07 1.3E-11 92.9 12.1 105 398-513 9-119 (406)
231 1dce_A Protein (RAB geranylger 98.5 5.4E-07 1.8E-11 97.5 13.7 135 399-549 29-176 (567)
232 4f3v_A ESX-1 secretion system 98.5 4.4E-07 1.5E-11 88.4 11.0 109 400-523 137-248 (282)
233 2vyi_A SGTA protein; chaperone 98.5 1.3E-06 4.4E-11 73.2 12.7 81 447-528 12-92 (131)
234 3dra_A Protein farnesyltransfe 98.5 9.3E-07 3.2E-11 87.7 13.4 110 398-523 67-187 (306)
235 1ouv_A Conserved hypothetical 98.5 1.5E-06 5.1E-11 84.1 14.7 63 447-511 74-144 (273)
236 2dba_A Smooth muscle cell asso 98.5 9.2E-07 3.1E-11 76.3 11.8 82 447-529 28-112 (148)
237 4g1t_A Interferon-induced prot 98.5 4.1E-07 1.4E-11 95.4 11.2 117 398-522 94-215 (472)
238 3dra_A Protein farnesyltransfe 98.5 7.7E-07 2.6E-11 88.3 12.5 122 414-551 49-180 (306)
239 1ihg_A Cyclophilin 40; ppiase 98.5 5.3E-07 1.8E-11 92.3 11.3 92 397-503 272-363 (370)
240 1na0_A Designed protein CTPR3; 98.5 1.6E-06 5.6E-11 71.9 12.5 80 447-527 9-88 (125)
241 3sf4_A G-protein-signaling mod 98.5 5.7E-07 2E-11 91.6 11.4 108 397-513 186-299 (406)
242 1nzn_A CGI-135 protein, fissio 98.5 1.9E-06 6.5E-11 72.6 12.3 100 414-529 17-121 (126)
243 3q7a_A Farnesyltransferase alp 98.5 1.9E-06 6.4E-11 86.7 14.4 125 411-551 67-201 (349)
244 2v5f_A Prolyl 4-hydroxylase su 98.5 1.5E-06 5E-11 71.6 11.3 82 447-529 5-93 (104)
245 3k9i_A BH0479 protein; putativ 98.4 5.5E-07 1.9E-11 75.4 8.7 75 396-485 25-99 (117)
246 2v5f_A Prolyl 4-hydroxylase su 98.4 1.4E-06 4.6E-11 71.8 10.3 83 398-488 5-87 (104)
247 3dss_A Geranylgeranyl transfer 98.4 1.8E-06 6E-11 86.4 12.8 92 408-514 39-143 (331)
248 3dss_A Geranylgeranyl transfer 98.4 5.7E-06 1.9E-10 82.7 16.2 100 414-529 90-192 (331)
249 2r5s_A Uncharacterized protein 98.4 1.1E-06 3.6E-11 79.5 10.0 107 398-509 40-172 (176)
250 3ro2_A PINS homolog, G-protein 98.4 1.3E-06 4.6E-11 85.8 11.4 108 397-513 182-295 (338)
251 4a1s_A PINS, partner of inscut 98.4 2.6E-06 8.8E-11 87.3 13.8 107 398-513 223-335 (411)
252 1elr_A TPR2A-domain of HOP; HO 98.4 1.7E-06 5.9E-11 72.5 10.1 68 447-514 4-71 (131)
253 3gw4_A Uncharacterized protein 98.4 1.9E-06 6.5E-11 78.8 11.1 109 396-512 64-178 (203)
254 3qou_A Protein YBBN; thioredox 98.4 8.2E-07 2.8E-11 87.3 9.0 108 398-509 151-283 (287)
255 1ouv_A Conserved hypothetical 98.4 6.2E-06 2.1E-10 79.7 15.2 63 448-512 147-217 (273)
256 3rjv_A Putative SEL1 repeat pr 98.4 3.2E-06 1.1E-10 79.0 12.5 126 398-525 18-171 (212)
257 3rjv_A Putative SEL1 repeat pr 98.3 3.4E-06 1.2E-10 78.8 11.8 110 400-526 87-210 (212)
258 3ma5_A Tetratricopeptide repea 98.3 1.7E-06 5.7E-11 70.4 8.0 80 398-492 7-88 (100)
259 3q7a_A Farnesyltransferase alp 98.3 2.5E-06 8.7E-11 85.7 10.4 110 400-525 90-210 (349)
260 1zu2_A Mitochondrial import re 98.2 3E-06 1E-10 74.9 8.9 69 459-528 14-92 (158)
261 1klx_A Cysteine rich protein B 98.2 2.2E-05 7.5E-10 68.0 13.0 90 404-512 31-128 (138)
262 2kat_A Uncharacterized protein 98.2 5.3E-06 1.8E-10 68.9 8.2 81 398-493 19-101 (115)
263 4f3v_A ESX-1 secretion system 98.1 4.5E-06 1.6E-10 81.2 8.3 95 401-511 105-201 (282)
264 1hz4_A MALT regulatory protein 98.1 2E-05 6.8E-10 79.8 13.3 108 397-513 52-167 (373)
265 3n71_A Histone lysine methyltr 98.1 7.3E-06 2.5E-10 86.7 9.7 108 395-510 348-464 (490)
266 2ooe_A Cleavage stimulation fa 98.1 5.2E-05 1.8E-09 81.0 16.2 114 415-544 255-383 (530)
267 3o48_A Mitochondria fission 1 98.0 4E-05 1.4E-09 64.7 11.3 83 447-530 40-126 (134)
268 1hz4_A MALT regulatory protein 98.0 3.1E-05 1.1E-09 78.3 13.0 107 399-512 94-205 (373)
269 2xm6_A Protein corresponding t 98.0 2.6E-05 8.7E-10 82.5 12.5 76 447-525 363-449 (490)
270 2ooe_A Cleavage stimulation fa 98.0 2.6E-05 9E-10 83.3 12.2 102 399-514 273-389 (530)
271 1y8m_A FIS1; mitochondria, unk 98.0 6.8E-05 2.3E-09 64.1 11.6 82 447-529 39-124 (144)
272 3ly7_A Transcriptional activat 98.0 7.3E-05 2.5E-09 75.1 13.5 109 401-514 199-343 (372)
273 3u64_A Protein TP_0956; tetrat 97.9 6.8E-05 2.3E-09 72.4 10.6 88 413-513 178-272 (301)
274 1xi4_A Clathrin heavy chain; a 97.8 0.00012 4.1E-09 84.5 12.7 107 400-530 1197-1328(1630)
275 3gty_X Trigger factor, TF; cha 97.7 5.9E-05 2E-09 78.2 8.9 76 45-148 155-230 (433)
276 1pc2_A Mitochondria fission pr 97.7 0.00011 3.9E-09 64.0 7.9 79 399-491 33-115 (152)
277 1xi4_A Clathrin heavy chain; a 97.6 0.00022 7.7E-09 82.3 12.3 107 402-514 1053-1167(1630)
278 3gty_X Trigger factor, TF; cha 97.6 0.00011 3.8E-09 76.2 8.9 74 168-259 154-227 (433)
279 1b89_A Protein (clathrin heavy 97.6 0.00016 5.4E-09 74.6 9.2 77 449-530 179-255 (449)
280 4b4t_Q 26S proteasome regulato 97.6 0.00047 1.6E-08 70.9 12.7 118 395-512 52-206 (434)
281 2xm6_A Protein corresponding t 97.6 0.00056 1.9E-08 72.1 13.3 111 398-510 39-180 (490)
282 1klx_A Cysteine rich protein B 97.6 0.00063 2.1E-08 58.6 11.3 92 412-527 9-104 (138)
283 3e4b_A ALGK; tetratricopeptide 97.5 0.00037 1.3E-08 72.9 11.6 100 401-508 179-314 (452)
284 3ffl_A Anaphase-promoting comp 97.4 0.0015 5.2E-08 57.3 12.2 101 401-507 23-148 (167)
285 4b4t_Q 26S proteasome regulato 97.4 0.00048 1.7E-08 70.8 10.1 104 398-510 135-245 (434)
286 3e4b_A ALGK; tetratricopeptide 97.3 0.0014 4.7E-08 68.6 12.7 88 401-509 251-350 (452)
287 2ff4_A Probable regulatory pro 97.3 0.0038 1.3E-07 63.8 15.7 127 397-525 114-254 (388)
288 3mv2_B Coatomer subunit epsilo 97.3 0.0014 4.6E-08 64.6 11.2 86 412-515 192-287 (310)
289 3qwp_A SET and MYND domain-con 97.2 0.00046 1.6E-08 71.7 7.7 93 394-493 325-425 (429)
290 3bee_A Putative YFRE protein; 97.2 0.00087 3E-08 53.5 7.7 68 398-480 6-76 (93)
291 3qww_A SET and MYND domain-con 97.2 0.00074 2.5E-08 70.1 8.3 76 395-477 337-412 (433)
292 3u64_A Protein TP_0956; tetrat 97.1 0.0014 4.9E-08 63.2 9.1 53 462-514 178-237 (301)
293 3mv2_B Coatomer subunit epsilo 96.9 0.0054 1.8E-07 60.3 11.2 99 402-513 104-210 (310)
294 4h7y_A Dual specificity protei 96.8 0.028 9.7E-07 48.3 13.0 127 390-525 12-138 (161)
295 1b89_A Protein (clathrin heavy 96.7 0.0012 4E-08 68.1 5.2 52 448-507 123-174 (449)
296 1nzn_A CGI-135 protein, fissio 96.6 0.0097 3.3E-07 49.9 8.9 45 446-490 73-117 (126)
297 3ffl_A Anaphase-promoting comp 96.4 0.0089 3E-07 52.5 7.8 94 397-491 62-165 (167)
298 3o48_A Mitochondria fission 1 96.3 0.012 4.2E-07 49.5 8.0 45 446-490 77-121 (134)
299 1y8m_A FIS1; mitochondria, unk 96.3 0.02 6.9E-07 48.8 9.3 44 446-489 76-119 (144)
300 4e6h_A MRNA 3'-END-processing 95.4 0.031 1E-06 61.3 8.3 58 403-475 348-406 (679)
301 4e6h_A MRNA 3'-END-processing 95.3 0.18 6.1E-06 55.2 14.3 112 403-514 383-503 (679)
302 4gns_B Protein CSD3, chitin bi 95.3 0.11 3.7E-06 57.2 12.4 59 449-507 339-397 (754)
303 3kae_A CDC27, possible protein 94.7 0.37 1.3E-05 42.2 11.4 67 447-513 62-146 (242)
304 3txn_A 26S proteasome regulato 94.0 0.26 8.9E-06 50.0 10.7 98 403-509 104-209 (394)
305 1zbp_A Hypothetical protein VP 93.6 0.41 1.4E-05 45.4 10.4 61 456-516 6-66 (273)
306 3mkr_B Coatomer subunit alpha; 93.6 0.54 1.8E-05 45.7 11.5 114 400-513 104-230 (320)
307 3mv2_A Coatomer subunit alpha; 93.3 0.29 1E-05 47.6 9.1 118 397-514 113-240 (325)
308 3ly7_A Transcriptional activat 93.0 0.19 6.4E-06 50.4 7.4 68 403-487 282-349 (372)
309 1zbp_A Hypothetical protein VP 91.5 2 6.9E-05 40.7 12.0 64 405-483 4-67 (273)
310 4b4t_R RPN7, 26S proteasome re 91.3 0.43 1.5E-05 49.1 8.1 98 401-510 134-237 (429)
311 1ya0_A SMG-7 transcript varian 91.1 1.4 4.6E-05 46.2 11.6 77 447-524 152-228 (497)
312 2v6y_A AAA family ATPase, P60 90.8 0.32 1.1E-05 37.4 5.0 41 390-430 2-43 (83)
313 2uy1_A Cleavage stimulation fa 90.3 4.3 0.00015 42.3 14.9 108 401-514 216-353 (493)
314 2uy1_A Cleavage stimulation fa 90.3 2.7 9.2E-05 43.9 13.2 39 447-486 213-251 (493)
315 4gns_B Protein CSD3, chitin bi 88.9 0.66 2.2E-05 51.0 7.3 59 400-473 339-397 (754)
316 2cpt_A SKD1 protein, vacuolar 86.6 1.2 4.2E-05 36.6 5.9 43 388-430 7-50 (117)
317 2w2u_A Hypothetical P60 katani 86.1 0.83 2.8E-05 35.1 4.4 39 392-430 13-51 (83)
318 2v6x_A Vacuolar protein sortin 86.1 0.94 3.2E-05 34.9 4.7 41 390-430 5-45 (85)
319 4b4t_P 26S proteasome regulato 85.0 5.9 0.0002 40.7 11.7 105 397-510 136-247 (445)
320 1wfd_A Hypothetical protein 15 84.4 2.2 7.6E-05 33.4 6.2 37 394-430 11-47 (93)
321 4g26_A Pentatricopeptide repea 84.2 7.5 0.00026 40.6 12.2 95 405-513 112-209 (501)
322 4a5x_A MITD1, MIT domain-conta 81.6 2.5 8.6E-05 32.6 5.4 34 397-430 15-48 (86)
323 2wb7_A PT26-6P; extra chromoso 81.4 4.2 0.00014 41.6 8.3 92 391-510 422-516 (526)
324 4g26_A Pentatricopeptide repea 79.9 24 0.00082 36.7 14.1 90 410-513 82-174 (501)
325 3mkq_A Coatomer beta'-subunit; 78.4 6 0.0002 43.4 9.5 60 447-506 681-761 (814)
326 3mkq_B Coatomer subunit alpha; 77.8 5.7 0.00019 35.1 7.1 25 400-424 36-60 (177)
327 3txn_A 26S proteasome regulato 77.4 52 0.0018 33.0 15.1 147 398-544 19-205 (394)
328 1ya0_A SMG-7 transcript varian 76.6 7.9 0.00027 40.4 9.1 79 400-493 154-232 (497)
329 3mkq_A Coatomer beta'-subunit; 75.9 7.3 0.00025 42.7 9.3 91 400-513 683-778 (814)
330 1qsa_A Protein (soluble lytic 74.3 17 0.00058 39.0 11.2 53 457-509 295-347 (618)
331 3mkq_B Coatomer subunit alpha; 73.7 8.2 0.00028 34.1 7.1 46 458-508 16-61 (177)
332 1wy6_A Hypothetical protein ST 72.9 16 0.00054 30.9 8.0 38 474-511 118-155 (172)
333 4fhn_B Nucleoporin NUP120; pro 72.7 6 0.0002 46.0 7.7 106 402-507 846-964 (1139)
334 4b4t_S RPN3, 26S proteasome re 71.9 9.6 0.00033 39.7 8.1 68 447-514 231-303 (523)
335 2crb_A Nuclear receptor bindin 70.5 4.1 0.00014 31.5 3.7 36 395-430 12-47 (97)
336 4a5x_A MITD1, MIT domain-conta 69.9 30 0.001 26.4 8.7 26 484-509 19-44 (86)
337 3lpz_A GET4 (YOR164C homolog); 69.6 39 0.0013 33.0 11.5 37 392-428 29-66 (336)
338 2dl1_A Spartin; SPG20, MIT, st 68.6 14 0.00047 30.0 6.6 73 393-465 17-96 (116)
339 2dl1_A Spartin; SPG20, MIT, st 68.5 7.6 0.00026 31.5 5.1 63 461-531 17-82 (116)
340 2crb_A Nuclear receptor bindin 67.8 7.9 0.00027 29.9 4.8 28 481-508 15-42 (97)
341 2ijq_A Hypothetical protein; s 62.9 26 0.00089 30.3 7.8 71 399-476 33-104 (161)
342 2vkj_A TM1634; membrane protei 62.5 17 0.00059 27.7 5.6 31 396-426 51-81 (106)
343 2wpv_A GET4, UPF0363 protein Y 59.2 65 0.0022 31.1 10.9 27 479-505 132-158 (312)
344 2cpt_A SKD1 protein, vacuolar 58.5 27 0.00093 28.4 6.8 18 497-514 41-58 (117)
345 2ff4_A Probable regulatory pro 58.4 24 0.00081 35.3 7.9 62 399-475 172-233 (388)
346 4h7y_A Dual specificity protei 57.5 30 0.001 29.7 7.0 70 411-496 73-142 (161)
347 3spa_A Mtrpol, DNA-directed RN 57.4 57 0.002 37.1 11.2 99 400-510 129-230 (1134)
348 3t5v_B Nuclear mRNA export pro 57.4 31 0.001 35.4 8.6 104 411-514 139-254 (455)
349 2o8p_A 14-3-3 domain containin 57.1 49 0.0017 30.3 8.9 60 409-476 136-197 (227)
350 2vkj_A TM1634; membrane protei 55.8 28 0.00096 26.6 5.8 32 481-512 53-84 (106)
351 4b4t_R RPN7, 26S proteasome re 55.7 16 0.00056 37.1 6.3 80 448-527 132-215 (429)
352 3kae_A CDC27, possible protein 55.6 1.1E+02 0.0036 26.9 13.1 116 398-513 62-240 (242)
353 2npm_A 14-3-3 domain containin 52.5 40 0.0014 31.6 7.8 53 415-475 173-226 (260)
354 3r9m_A BRO1 domain-containing 49.7 96 0.0033 30.7 10.7 30 481-510 253-282 (376)
355 2ymb_A MITD1, MIT domain-conta 49.4 3.5 0.00012 38.7 0.0 38 394-431 19-56 (257)
356 4b4t_P 26S proteasome regulato 47.4 1.5E+02 0.0052 29.9 12.1 85 446-531 136-229 (445)
357 2rpa_A Katanin P60 ATPase-cont 47.4 76 0.0026 23.7 7.1 49 485-533 16-69 (78)
358 2br9_A 14-3-3E, 14-3-3 protein 46.9 46 0.0016 30.7 7.1 53 415-475 147-201 (234)
359 2w2u_A Hypothetical P60 katani 46.9 90 0.0031 23.5 8.5 18 497-514 42-59 (83)
360 2cfu_A SDSA1; SDS-hydrolase, l 44.8 31 0.0011 37.2 6.6 50 448-497 450-499 (658)
361 3eab_A Spastin; spastin, MIT, 44.7 29 0.00098 26.7 4.4 69 461-534 11-79 (89)
362 2v6y_A AAA family ATPase, P60 43.8 1E+02 0.0034 23.1 8.1 18 497-514 34-51 (83)
363 3ax2_A Mitochondrial import re 43.7 57 0.0019 24.0 5.8 27 487-513 23-49 (73)
364 3uzd_A 14-3-3 protein gamma; s 43.6 56 0.0019 30.4 7.1 53 415-475 148-202 (248)
365 3ubw_A 14-3-3E, 14-3-3 protein 43.3 56 0.0019 30.5 7.1 53 415-475 173-227 (261)
366 2rpa_A Katanin P60 ATPase-cont 43.0 48 0.0017 24.8 5.4 38 389-430 7-44 (78)
367 1o9d_A 14-3-3-like protein C; 42.3 58 0.002 30.5 7.1 52 415-474 152-205 (260)
368 1wfd_A Hypothetical protein 15 40.7 1.2E+02 0.0042 23.2 9.7 17 497-513 38-54 (93)
369 2ijq_A Hypothetical protein; s 40.5 1.3E+02 0.0045 25.8 8.6 60 451-510 36-104 (161)
370 3iqu_A 14-3-3 protein sigma; s 39.4 65 0.0022 29.7 6.8 54 414-475 149-204 (236)
371 4abx_A DNA repair protein RECN 37.5 1E+02 0.0036 26.7 7.8 49 465-513 74-122 (175)
372 3qnk_A Putative lipoprotein; a 37.1 2.7E+02 0.0092 28.7 12.3 48 463-510 153-211 (517)
373 3t5x_A PCI domain-containing p 36.2 67 0.0023 28.8 6.4 53 446-498 13-70 (203)
374 3eab_A Spastin; spastin, MIT, 35.2 88 0.003 24.0 5.8 65 396-460 14-85 (89)
375 4gq2_M Nucleoporin NUP120; bet 35.1 50 0.0017 37.4 6.6 49 456-508 819-867 (950)
376 3htx_A HEN1; HEN1, small RNA m 34.7 38 0.0013 37.6 5.2 64 287-350 562-649 (950)
377 2cwy_A Hypothetical protein TT 34.2 1.1E+02 0.0036 23.7 6.4 62 403-475 6-67 (94)
378 4fhn_B Nucleoporin NUP120; pro 33.8 52 0.0018 38.0 6.6 52 453-508 818-869 (1139)
379 3spa_A Mtrpol, DNA-directed RN 33.6 2.9E+02 0.0098 31.5 12.0 76 447-523 127-208 (1134)
380 3efz_A 14-3-3 protein; 14-3-3, 33.1 67 0.0023 30.2 5.9 54 415-476 169-226 (268)
381 3i4g_A SUSD-like carbohydrate 31.8 2.4E+02 0.0081 29.2 10.8 48 463-510 167-227 (528)
382 3ax2_A Mitochondrial import re 31.3 1.2E+02 0.004 22.3 5.8 35 393-427 12-46 (73)
383 2rkl_A Vacuolar protein sortin 30.5 51 0.0018 22.6 3.4 39 391-429 13-51 (53)
384 1om2_A Protein (mitochondrial 30.4 78 0.0027 24.6 4.9 27 452-478 25-51 (95)
385 3myv_A SUSD superfamily protei 30.2 1E+02 0.0034 31.4 7.4 30 446-475 189-218 (454)
386 2v6x_A Vacuolar protein sortin 28.3 1.8E+02 0.0063 21.6 9.7 18 492-509 24-41 (85)
387 3kez_A Putative sugar binding 28.0 1.1E+02 0.0037 31.2 7.2 30 446-475 195-224 (461)
388 1om2_A Protein (mitochondrial 27.9 85 0.0029 24.4 4.8 39 390-428 12-50 (95)
389 3otn_A SUSD superfamily protei 27.8 1.9E+02 0.0064 29.6 9.0 47 463-509 160-225 (482)
390 1zb1_A BRO1 protein; AIP1, BRO 27.4 2.8E+02 0.0095 27.4 10.0 28 482-509 258-285 (392)
391 3t5x_A PCI domain-containing p 26.6 1.5E+02 0.005 26.5 7.0 26 485-510 18-43 (203)
392 2cfu_A SDSA1; SDS-hydrolase, l 26.5 1.5E+02 0.0051 31.8 8.2 49 480-529 448-496 (658)
393 3mcx_A SUSD superfamily protei 25.8 1.1E+02 0.0038 31.2 6.8 31 446-476 201-231 (477)
394 4gq2_M Nucleoporin NUP120; bet 25.0 2.2E+02 0.0074 32.1 9.5 65 450-514 843-930 (950)
395 3htx_A HEN1; HEN1, small RNA m 24.6 1.7E+02 0.0057 32.6 8.0 59 44-110 560-650 (950)
396 2yin_A DOCK2, dedicator of cyt 24.0 1.1E+02 0.0038 31.0 6.3 95 400-495 37-140 (436)
397 2zan_A Vacuolar protein sortin 23.0 18 0.0006 37.1 0.0 38 394-431 7-44 (444)
398 3lew_A SUSD-like carbohydrate 22.6 1E+02 0.0035 31.7 5.8 32 445-476 201-232 (495)
399 3pmr_A Amyloid-like protein 1; 22.6 4.2E+02 0.015 23.8 10.2 85 447-532 93-183 (219)
400 3jq1_A SUSD superfamily protei 22.2 2E+02 0.0068 29.4 8.0 93 414-508 79-207 (481)
401 3snx_A SUSD homolog, putative 22.0 1.5E+02 0.0053 30.1 7.0 30 446-475 190-219 (460)
402 3bqo_A Telomeric repeat-bindin 21.1 2.5E+02 0.0087 25.0 7.0 45 452-496 122-166 (211)
403 2pmr_A Uncharacterized protein 20.7 1.2E+02 0.004 23.2 4.2 38 391-428 32-69 (87)
404 2oo2_A Hypothetical protein AF 20.6 1.1E+02 0.0039 23.2 4.1 39 391-429 28-66 (86)
405 2yhe_A SEC-alkyl sulfatase; hy 25.9 21 0.00073 38.6 0.0 53 448-500 462-514 (668)
406 3bu8_A Telomeric repeat-bindin 20.3 1.2E+02 0.004 27.5 4.7 43 454-496 121-163 (235)
407 2wm9_A Dedicator of cytokinesi 20.1 1.1E+02 0.0038 30.9 5.3 98 399-497 12-137 (428)
No 1
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=100.00 E-value=8.7e-65 Score=519.70 Aligned_cols=344 Identities=32% Similarity=0.529 Sum_probs=212.3
Q ss_pred hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (553)
Q Consensus 22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~ 101 (553)
+...++++||+|+++++|+|...|+.||.|.+||++++.||++|+||+. ++.|+.|.+|.+++++||+++|.+|++
T Consensus 4 ~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~~~lG~g~~i~g~e~~l~gm~~ 79 (356)
T 3jxv_A 4 EENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKK 79 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEccc----CCCcEEEEeCCCccchHHHHHHhcCCC
Confidence 3456789999999999999976699999999999999999999999997 678999999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEE
Q 008788 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISA 181 (553)
Q Consensus 102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~ 181 (553)
|+++.|+|||++|||..+.+ +.||++++|+|+|+|++|.++.++..|.++.++++++|.|+.+|..||.|+|||++
T Consensus 80 Ge~~~~~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g 155 (356)
T 3jxv_A 80 GENALFTIPPELAYGESGSP----PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEA 155 (356)
T ss_dssp ------------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEE
T ss_pred CCEEEEEEChHHhCCCCCCC----CCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEE
Confidence 99999999999999999876 68999999999999999998888899999999999999999999999999999999
Q ss_pred EeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCC------CCCCCceEEEEEEEe
Q 008788 182 KTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP------VVEGCEEVHFEVELV 255 (553)
Q Consensus 182 ~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~------~i~~~~~l~~~v~l~ 255 (553)
++.||++|+++ .++.|.+|.+++++||+++|.+|++||+++++|||+++||+.+.+ .||++++|+|+|+|+
T Consensus 156 ~l~dgt~~~~~---~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~ 232 (356)
T 3jxv_A 156 RLEDGTVVSKS---EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELV 232 (356)
T ss_dssp EETTSCEEEEE---EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEE
T ss_pred EECCCCEEecc---CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEE
Confidence 99999999987 379999999999999999999999999999999999999985332 599999999999999
Q ss_pred eeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHH
Q 008788 256 HLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEM 335 (553)
Q Consensus 256 ~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~ 335 (553)
+|..+.|++.|++++++++++|.|.. .|..|+.|+|||++++.| |++|+++... +++|+.|.+|.+++|+||+.
T Consensus 233 ~~~~v~dv~~d~~~~~~i~~~g~g~~---~~~~gd~V~v~y~g~l~d--G~~fd~~~~~-~~~p~~f~~G~g~~i~G~e~ 306 (356)
T 3jxv_A 233 SWKTVTEIGDDKKILKKVLKEXEGYE---RPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQEPFEFKTDEEAVIEGLDR 306 (356)
T ss_dssp EEECEEEESTTCCEEEEEEECCBSSC---CCCTTCEEEEEEEEEESS--SCEEEEESCT-TSCCCEEETTTTSSCHHHHH
T ss_pred EEecccccccccceeEEeeecccccC---CCCCCCEEEEEEEEEECC--CCEEeecccc-CCcCEEEEECCCccchHHHH
Confidence 99999999999999999999999953 358999999999999976 9999766443 47899999999999999999
Q ss_pred HHhcCCCCcEEEEEeCCCCcccCCCC--CCCCCCCCeEEEEEEEeeeec
Q 008788 336 CVRLMLPGEIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEK 382 (553)
Q Consensus 336 ~l~~M~~GE~~~~~~~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~ 382 (553)
+|.+|++||++.|+|||+++||..+. ...||++++++|+|+|+++++
T Consensus 307 ~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~ 355 (356)
T 3jxv_A 307 AVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355 (356)
T ss_dssp HHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred HHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence 99999999999999999999998873 357899999999999999874
No 2
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=100.00 E-value=3e-56 Score=474.59 Aligned_cols=383 Identities=29% Similarity=0.466 Sum_probs=323.6
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (553)
Q Consensus 151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~ 229 (553)
.+.|+.+.++++|.|...|+.||.|+|||++++.||++|+||. .+.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus 29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~ 108 (457)
T 1kt0_A 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK 108 (457)
T ss_dssp ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence 5789999999999996669999999999999999999999986 468999999999999999999999999999999999
Q ss_pred CCccCCCC-CCCCCCCCceEEEEEEEeeeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEE
Q 008788 230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVF 308 (553)
Q Consensus 230 ~~~~~g~~-~~~~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~ 308 (553)
|+++||.. .++.||++++++|+|+|++|... |++.|++++++++++|.|.. +|..|+.|+|||+|++ + |++|
T Consensus 109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~---~p~~g~~V~v~y~g~~-~--g~~f 181 (457)
T 1kt0_A 109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYS---NPNEGATVEIHLEGRC-G--GRMF 181 (457)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSC---CCCTTCEEEEEEEEEE-T--TEEE
T ss_pred hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCC---CCCCCCEEEEEEEEEe-C--CeEE
Confidence 99999985 45789999999999999999764 88899999999999998863 4689999999999998 4 7887
Q ss_pred EeccCCCCCCCeEEEeCCCC---chhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCC-CCCCCCeEEEEEEEeeeecCC
Q 008788 309 YDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPK 384 (553)
Q Consensus 309 ~~s~~~~~~~~~~f~lG~~~---v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~~~ 384 (553)
++ ++++|.+|+|. ++++|+.|+..|+.||++.+.++|.++|+..|... .||+++.+.|.+++..++...
T Consensus 182 -~~------~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~ 254 (457)
T 1kt0_A 182 -DC------RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK 254 (457)
T ss_dssp -EE------EEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred -ec------CceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence 43 25899999774 89999999999999999999999999999998654 689999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH
Q 008788 385 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464 (553)
Q Consensus 385 ~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~ 464 (553)
+.+.+..+.....+..++..|+.+++.|+|.+|+..|++|++.........+++..........+|+|+|.||+++++|+
T Consensus 255 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 334 (457)
T 1kt0_A 255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334 (457)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 88889999999999999999999999999999999999999965443333345556677777899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008788 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL 544 (553)
Q Consensus 465 ~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (553)
+|+.+|++||+++|+++++||++|.+|..+++|++|+.+|++|++++|++ ..+...+..+..++.+.+++++++|++||
T Consensus 335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 46888999999999999999999999999
Q ss_pred cccc
Q 008788 545 TRSL 548 (553)
Q Consensus 545 ~~~~ 548 (553)
++..
T Consensus 414 ~k~~ 417 (457)
T 1kt0_A 414 KKFA 417 (457)
T ss_dssp ----
T ss_pred hhhh
Confidence 8865
No 3
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=100.00 E-value=6e-44 Score=379.80 Aligned_cols=373 Identities=21% Similarity=0.317 Sum_probs=274.4
Q ss_pred CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEE
Q 008788 27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM 106 (553)
Q Consensus 27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~ 106 (553)
+++||.|+|+++|+|...|+.||.|+|||++++.||++|+||+. ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus 29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~----~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~ 104 (457)
T 1kt0_A 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104 (457)
T ss_dssp ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC----------CEEEETTSTTSCHHHHHHHTTCCTTCEEE
T ss_pred CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCC----CCCCeEEEeCCcchhhHHHHHHhhCCCCCEEE
Confidence 79999999999999997799999999999999889999999987 67899999999999999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCC
Q 008788 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG 186 (553)
Q Consensus 107 ~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g 186 (553)
|+|||+++||..|.+ +.||++++++|+|+|++|... ++..|.++++.++.+|.|+..|..|+.|+|||++++ +|
T Consensus 105 ~~i~~~~~yg~~g~~----~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g 178 (457)
T 1kt0_A 105 LLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GG 178 (457)
T ss_dssp EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TT
T ss_pred EEEChHHhccccCCC----CCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CC
Confidence 999999999998876 789999999999999999765 455788999999999999999999999999999988 89
Q ss_pred cEEeecCCCCceEEEcCCCC---ccchHHHhhccCCcCcEEEEEEeCCccCCCCCC--CCCCCCceEEEEEEEeeeeeee
Q 008788 187 KLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQVR 261 (553)
Q Consensus 187 ~~~~s~~~~~p~~~~~g~~~---~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~--~~i~~~~~l~~~v~l~~~~~~~ 261 (553)
++|++. ++.|.+|.|. ++++|+.||..|++||++.|.++|.++|+..+. ..||+++.+.|.+.+.++.+..
T Consensus 179 ~~f~~~----~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~ 254 (457)
T 1kt0_A 179 RMFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK 254 (457)
T ss_dssp EEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred eEEecC----ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence 999973 6899999774 899999999999999999999999999998653 3689999999999999986544
Q ss_pred eccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCC-CCchhHHHHHHhcC
Q 008788 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLM 340 (553)
Q Consensus 262 d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~-~~v~~g~e~~l~~M 340 (553)
+.+.... ...| . .... ....|..+ |..|+ ..-+..++.++...
T Consensus 255 ~~~~~~~----------~~~~----~---~a~~------~~~~G~~~-------------~~~g~~~~A~~~y~~Al~~~ 298 (457)
T 1kt0_A 255 ESWEMDT----------KEKL----E---QAAI------VKEKGTVY-------------FKGGKYMQAVIQYGKIVSWL 298 (457)
T ss_dssp CGGGSCH----------HHHH----H---HHHH------HHHHHHHH-------------HHTTCHHHHHHHHHHHHHHH
T ss_pred chhhcCH----------HHHH----H---HHHH------HHHHHHHH-------------HhCCCHHHHHHHHHHHHHHh
Confidence 3320000 0000 0 0000 00001111 01111 11344455554321
Q ss_pred CCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHH
Q 008788 341 LPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAK 420 (553)
Q Consensus 341 ~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~ 420 (553)
. .. ..+ .. ....+.....+..+.+.|..+++.++|++|+..
T Consensus 299 p-----------~~--------------~~~---------~~-----~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 299 E-----------ME--------------YGL---------SE-----KESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp T-----------TC--------------CSC---------CH-----HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c-----------cc--------------ccC---------Ch-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1 10 000 00 000111122467788999999999999999999
Q ss_pred HHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008788 421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500 (553)
Q Consensus 421 Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A 500 (553)
|++||+ ++|.+ ..+|+++|.||+.+++|++|+.++++|++++|++..+++.++.++..++++++|
T Consensus 340 ~~~al~----~~p~~-----------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 340 CDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh----cCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999 67766 678999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 008788 501 QRD 503 (553)
Q Consensus 501 ~~~ 503 (553)
.+.
T Consensus 405 ~~~ 407 (457)
T 1kt0_A 405 DRR 407 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 4
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=100.00 E-value=7.9e-42 Score=336.08 Aligned_cols=222 Identities=26% Similarity=0.441 Sum_probs=205.4
Q ss_pred CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEE
Q 008788 27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM 106 (553)
Q Consensus 27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~ 106 (553)
+++||+|+++++|+|..+|+.||.|+|||++++.||++|++|++ ++.|+.|.+|.+++++||+.+|.+|++|+++.
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~ 124 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT----SSSCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEeccc----CCCCEEEEECCcChhHHHHHHHhcCCCCCEEE
Confidence 79999999999999997799999999999999989999999986 67899999999999999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeecccccc--CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeC
Q 008788 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA--DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG 184 (553)
Q Consensus 107 ~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~~~--~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~ 184 (553)
|+|||++|||..+.+ +.||++++++|+|+|+++... ++. .|.++.+.++++|.|+..|+.||.|+|||++++
T Consensus 125 v~ipp~~aYG~~g~~----~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~- 198 (280)
T 1q1c_A 125 ITCKPEYAYGSAGSP----PKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY- 198 (280)
T ss_dssp EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-
T ss_pred EEECcHHhCCCcCcc----CCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEEEEEEEe-
Confidence 999999999998875 689999999999999999764 333 778999999999999778999999999999987
Q ss_pred CCcEEeecCCCCceEEEcCCCC---ccchHHHhhccCCcCcEEEEEEeCCccCCCCCC--CCCCCCceEEEEEEEeeeee
Q 008788 185 DGKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQ 259 (553)
Q Consensus 185 ~g~~~~s~~~~~p~~~~~g~~~---~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~--~~i~~~~~l~~~v~l~~~~~ 259 (553)
+|++|++ .|+.|.+|.++ +++||+++|.+|++||+++|+|||+++||..+. ..||++++++|+|+|+++.+
T Consensus 199 dG~~fd~----~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~ 274 (280)
T 1q1c_A 199 KDKLFDQ----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274 (280)
T ss_dssp TTEEEEE----EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEEC
T ss_pred CCEEEec----CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeC
Confidence 9999997 48999999998 599999999999999999999999999998653 35999999999999999987
Q ss_pred eee
Q 008788 260 VRD 262 (553)
Q Consensus 260 ~~d 262 (553)
.+|
T Consensus 275 ~~~ 277 (280)
T 1q1c_A 275 AKE 277 (280)
T ss_dssp CCC
T ss_pred CCC
Confidence 665
No 5
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=100.00 E-value=1.1e-38 Score=326.47 Aligned_cols=228 Identities=27% Similarity=0.450 Sum_probs=209.4
Q ss_pred cccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCc
Q 008788 24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103 (553)
Q Consensus 24 ~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~ 103 (553)
....++++.++++++|.|..+|..||.|.+||++++.||++|+++. ++.|.+|.+.+++||+.+|.+|++||
T Consensus 122 di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~~--------~~~f~~g~~~v~~gl~~~l~~m~~GE 193 (356)
T 3jxv_A 122 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE--------GVEFTVKDGHLCPALAKAVKTMKKGE 193 (356)
T ss_dssp ETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEEE--------EEEEEGGGCSSSHHHHHHHTTCCBTC
T ss_pred ccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEeccC--------CEEEEeCCCCcchHHHHHHhhCCCCC
Confidence 3446799999999999998789999999999999999999999774 69999999999999999999999999
Q ss_pred EEEEEEcCCCccCCCCCCCCCC-CCCCCCCeEEEEEEEEeeeccccccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEE
Q 008788 104 VSMFKMKPQMHYGEDDCPVAAP-STFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK 182 (553)
Q Consensus 104 ~~~~~ip~~~a~g~~~~~~~~~-~~i~~~~~l~~~v~l~~~~~~~~~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~ 182 (553)
++.++|||+++||..|++...+ ..||++++|+|+|+|++|....++..|.+++++++++|.|++.|+.||.|+|||+++
T Consensus 194 ~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~ 273 (356)
T 3jxv_A 194 KVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGK 273 (356)
T ss_dssp EEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEE
T ss_pred EEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEE
Confidence 9999999999999998763211 259999999999999999988888888999999999999999999999999999999
Q ss_pred eCCCcEEeecC--CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCC---CCCCCCCceEEEEEEEeee
Q 008788 183 TGDGKLILSHR--EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL---MPVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 183 ~~~g~~~~s~~--~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~---~~~i~~~~~l~~~v~l~~~ 257 (553)
+.||++|+++. .++|+.|.+|.+++++||+++|.+|++||+++|+|||+++||+.+ ...||+|++|+|+|+|++|
T Consensus 274 l~dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~ 353 (356)
T 3jxv_A 274 LQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF 353 (356)
T ss_dssp ESSSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEE
T ss_pred ECCCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEE
Confidence 99999999873 478999999999999999999999999999999999999999864 3678999999999999998
Q ss_pred ee
Q 008788 258 IQ 259 (553)
Q Consensus 258 ~~ 259 (553)
.+
T Consensus 354 ~~ 355 (356)
T 3jxv_A 354 VK 355 (356)
T ss_dssp EC
T ss_pred Ec
Confidence 63
No 6
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=100.00 E-value=2.2e-38 Score=311.53 Aligned_cols=223 Identities=30% Similarity=0.441 Sum_probs=202.0
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (553)
Q Consensus 151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~ 229 (553)
.+.++.++++++|.|..+|+.||.|+|||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip 128 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 128 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence 57899999999999976699999999999999999999999864 68999999999999999999999999999999999
Q ss_pred CCccCCCC-CCCCCCCCceEEEEEEEeeeeeeeecc--CCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCc
Q 008788 230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKK 306 (553)
Q Consensus 230 ~~~~~g~~-~~~~i~~~~~l~~~v~l~~~~~~~d~~--~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~ 306 (553)
|+++||.. .++.||++++|+|+|+|++|.. .|+. .|++++++++++|.|.. .|..|+.|+|||.+++ + |+
T Consensus 129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~---~~~~gd~V~i~y~g~~-d--G~ 201 (280)
T 1q1c_A 129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYA---KPNEGAIVEVALEGYY-K--DK 201 (280)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSC---CCCTTCEEEEEEEEEE-T--TE
T ss_pred cHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccc---cccCCceEEEEEEEEe-C--CE
Confidence 99999984 4568999999999999999976 4777 89999999999999974 2478999999999997 4 88
Q ss_pred EEEeccCCCCCCCeEEEeCCCC---chhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCC-CCCCCCeEEEEEEEeeeec
Q 008788 307 VFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382 (553)
Q Consensus 307 ~~~~s~~~~~~~~~~f~lG~~~---v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~ 382 (553)
+|++ +|+.|.+|.+. +|+||+.+|.+|++||++.|+|||+++||..+.+. .||++++++|+|+|+++..
T Consensus 202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~ 274 (280)
T 1q1c_A 202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274 (280)
T ss_dssp EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEEC
T ss_pred EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeC
Confidence 8843 37999999998 59999999999999999999999999999988765 5999999999999999998
Q ss_pred CCCCC
Q 008788 383 PKDWT 387 (553)
Q Consensus 383 ~~~~~ 387 (553)
+.+.|
T Consensus 275 ~~~~W 279 (280)
T 1q1c_A 275 AKESW 279 (280)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 87655
No 7
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=100.00 E-value=5e-39 Score=328.41 Aligned_cols=277 Identities=30% Similarity=0.435 Sum_probs=206.1
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCC-CchhHHHHHHhcCCCCc
Q 008788 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGE 344 (553)
Q Consensus 266 dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~-~v~~g~e~~l~~M~~GE 344 (553)
++++.|+++++|.|..| ..|+.|+|||+|++.+ +|++|++|.. +++|++|.+|.+ .+|+||+.+|.+|++||
T Consensus 48 ~~~~~~~~~~~g~g~~~----~~gd~v~v~y~g~~~~-~g~~fd~~~~--~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge 120 (338)
T 2if4_A 48 DEKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGE 120 (338)
T ss_dssp ETTEEEEEEECCBSCCC----CTTCEEEEEEEEEETT-TCCCCEEHHH--HTCCEEEETTSCCGGGHHHHHHHHHCCBTC
T ss_pred CCCeEEEEEeCCCCCCC----CCCCEEEEEEEEEEcC-CCcEeecccC--CCCCeEEEcCCCCcccHHHHHHHhcCCCCC
Confidence 46799999999999854 7899999999999875 4899866542 368999999999 89999999999999999
Q ss_pred EEEEEeCCCCcccCCCC--CCCCCCCCeEEEEEEEeeeecCCC---CCCCChhhHHHHHHHHHhhhccccccCCHHHHHH
Q 008788 345 IALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKA 419 (553)
Q Consensus 345 ~~~~~~~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~~~~---~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~ 419 (553)
++.|+||+.++||..+. .+.||+++++.|.|+|+++....+ .+.++.++++..+..++..|+.+++.|+|.+|+.
T Consensus 121 ~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~ 200 (338)
T 2if4_A 121 RALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQ 200 (338)
T ss_dssp EEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHH
T ss_pred eEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999987 367999999999999999887543 5678999999999999999999999999999999
Q ss_pred HHHHHHHHhhccC--CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008788 420 KYEKVLRDFNHVN--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (553)
Q Consensus 420 ~Y~~Al~~l~~~~--~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~ 497 (553)
.|++|+....... .......+....+...+|+|+|.||+++++|++|+.+|++||+++|+++++||++|.+|..+|+|
T Consensus 201 ~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~ 280 (338)
T 2if4_A 201 QYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM 280 (338)
T ss_dssp HHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999432210 00111122334445579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 008788 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSLGK 550 (553)
Q Consensus 498 ~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~ 550 (553)
++|+.+|++|++++|++ ..++..|..+..+.+...++.++.|++||+..+.+
T Consensus 281 ~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 281 DSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999997 56888899998888888889999999999987754
No 8
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=100.00 E-value=7.4e-36 Score=304.66 Aligned_cols=275 Identities=29% Similarity=0.469 Sum_probs=244.0
Q ss_pred eeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCC---chhHHHHH
Q 008788 260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMC 336 (553)
Q Consensus 260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~---v~~g~e~~ 336 (553)
..|++.|++|+|+|+++|.|.. +|..|+.|+|||+|++ + |++|++ + |++|.+|.|. ++++|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~~g~g~~---~p~~~~~v~v~y~g~~-~--g~~fd~-~------~~~f~lG~g~~~~~~~~~e~a 84 (336)
T 1p5q_A 18 GSHMEEDGGIIRRIQTRGEGYA---KPNEGAIVEVALEGYY-K--DKLFDQ-R------ELRFEIGEGENLDLPYGLERA 84 (336)
T ss_dssp ----CCTTSEEEEEEECCCCSC---CCCTTCEEEEEEEEEE-T--TEEEEE-E------EEEEETTCGGGGTCCHHHHHH
T ss_pred ceeecCCCcEEEEEEeCCCCCC---CCCCCCeEEEEEEEEE-C--CEEEec-C------CeEEEeCCCCccccchHHHHH
Confidence 4678899999999999999972 3578999999999998 4 888843 2 7999999987 58999999
Q ss_pred HhcCCCCcEEEEEeCCCCcccCCCCCC-CCCCCCeEEEEEEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHH
Q 008788 337 VRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFE 415 (553)
Q Consensus 337 l~~M~~GE~~~~~~~~~~~yg~~g~~~-~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~ 415 (553)
+..|++||++.+.++|+++||..|... .||+++.+.|+++|.+++...+.+.+..+.....+..++..|+.+++.|+|+
T Consensus 85 l~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~ 164 (336)
T 1p5q_A 85 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYK 164 (336)
T ss_dssp HTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999775 5999999999999999999888888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 008788 416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495 (553)
Q Consensus 416 ~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg 495 (553)
+|+..|++|++..........++..........+|+|+|.||+++++|.+|+.+|++||+++|+++++|+++|.+|..+|
T Consensus 165 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 244 (336)
T 1p5q_A 165 QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244 (336)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 99999999999543322222344555666778899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008788 496 EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTRSL 548 (553)
Q Consensus 496 ~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~ 548 (553)
+|++|+.+|++|++++|++ ..+...+..+...+.+.+++++++|++||++.+
T Consensus 245 ~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 245 DFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp CHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997 568889999999999999999999999998754
No 9
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.92 E-value=3.1e-25 Score=226.19 Aligned_cols=275 Identities=15% Similarity=0.145 Sum_probs=163.7
Q ss_pred CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCC-CcEEeecC-CCCceEEEcCCC-CccchHHHhhccCCcCcEEEEEE
Q 008788 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD-GKLILSHR-EGEPYFFTFGKS-EVPKGLEMGIGTMTREEKAVIYV 228 (553)
Q Consensus 152 d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~-g~~~~s~~-~~~p~~~~~g~~-~~~~g~~~~l~~mk~Ge~~~~~v 228 (553)
+.++.+.++++|.| ..|+.||.|+|||++++.+ |++|+++. .++|+.|.+|.+ ++++||+++|.+|++||++.|+|
T Consensus 48 ~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i 126 (338)
T 2if4_A 48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHV 126 (338)
T ss_dssp ETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEE
T ss_pred CCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEEE
Confidence 46899999999999 6899999999999999885 99999985 478999999999 99999999999999999999999
Q ss_pred eCCccCCCCCC---CCCCCCceEEEEEEEeeeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCC
Q 008788 229 TSQYLTPSPLM---PVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK 305 (553)
Q Consensus 229 ~~~~~~g~~~~---~~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g 305 (553)
||+++||..+. +.||++++++|+|+|+++....+ +.... .....-.+...-.+.. .|
T Consensus 127 ~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e----------------~~~~~---~~~~~~~~~~a~~~~~-~g 186 (338)
T 2if4_A 127 GWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE----------------GKARS---DMTVEERIGAADRRKM-DG 186 (338)
T ss_dssp CGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCC----------------CBTTT---BCCHHHHHHHHHHHHH-HH
T ss_pred CHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcc----------------ccccc---cCCHHHHHHHHHHHHH-HH
Confidence 99999998653 78999999999999998854221 00000 0000000000000000 00
Q ss_pred cEEEeccCCCCCCCeEEEeCCC-CchhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeecCC
Q 008788 306 KVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384 (553)
Q Consensus 306 ~~~~~s~~~~~~~~~~f~lG~~-~v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~~~ 384 (553)
..+ |..|+. .-+..++.++.... ... .
T Consensus 187 ~~~-------------~~~g~~~~A~~~y~~Al~~~p-----------~~~----------------~------------ 214 (338)
T 2if4_A 187 NSL-------------FKEEKLEEAMQQYEMAIAYMG-----------DDF----------------M------------ 214 (338)
T ss_dssp HHT-------------CSSSCCHHHHHHHHHHHHHSC-----------HHH----------------H------------
T ss_pred HHH-------------HhcCCHHHHHHHHHHHHHHhc-----------cch----------------h------------
Confidence 000 001110 12333444432210 000 0
Q ss_pred CCCCC-ChhhHHH--HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC
Q 008788 385 DWTGL-SFDGIMD--EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG 461 (553)
Q Consensus 385 ~~~~~-~~~e~~~--~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~ 461 (553)
+..+ ...+... ....+.+.|..+++.++|.+|+..|++||+ ++|.+ ..+|+++|.||+.++
T Consensus 215 -~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~a~~~~g 278 (338)
T 2if4_A 215 -FQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEEKN-----------PKALFRRGKAKAELG 278 (338)
T ss_dssp -HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTT
T ss_pred -hhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcC
Confidence 0000 0001111 123677899999999999999999999999 67766 678999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 462 ECRKSIEACNKVLDANPAHVKGLYRRGMAY-MALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 462 ~~~~A~~~~~~al~~dp~n~ka~~r~g~a~-~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+|++|+.++.++++++|++..++..++.+. ...+.++.|.+.|++++.++|++.
T Consensus 279 ~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 279 QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp CHHHHHHHHHHTTC-----------------------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999999999999984 456788899999999999999864
No 10
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=99.92 E-value=1.1e-24 Score=192.73 Aligned_cols=136 Identities=28% Similarity=0.484 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCCCCCC--hhhhhcccc--CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCC
Q 008788 1 MAVEDEDINPQKKKAPS--EDDKRRMKI--VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKG 76 (553)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~ 76 (553)
|||...+.-+...-.+. -..+..+.. .++|++|+++++|+|...|+.||.|.|||++++.||++|++++. ++
T Consensus 3 ~~mt~~~~~~~~~~~~~~~~~~~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~ 78 (144)
T 3o5e_A 3 MAMTTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RN 78 (144)
T ss_dssp --------------CTTHHHHHHCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGG----GT
T ss_pred ccccccccccccccccccccccccccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecc----cC
Confidence 56666555544332221 222223333 79999999999999986699999999999999999999999987 67
Q ss_pred cceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788 77 IPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (553)
Q Consensus 77 ~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~ 144 (553)
.|+.|.+|.+++++||+.+|.+|++|+++.|+|||++|||..+.+ +.|||+++|+|+|+|++|.
T Consensus 79 ~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ipp~~aYG~~g~~----~~Ipp~~~L~f~VeL~~ik 142 (144)
T 3o5e_A 79 EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFK 142 (144)
T ss_dssp SCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred CCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEChHHCcCCCCCC----CCcCCCCeEEEEEEEEEec
Confidence 899999999999999999999999999999999999999999876 6899999999999999985
No 11
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.91 E-value=8.7e-24 Score=181.26 Aligned_cols=114 Identities=26% Similarity=0.492 Sum_probs=102.4
Q ss_pred CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccC---CCCCcceEEEcCCCccchhHHhhcCCCCCCc
Q 008788 27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY---GGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103 (553)
Q Consensus 27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~---~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~ 103 (553)
.|+|++|+|+++|+|...|+.||.|.+||++++.||++|++|+... +..+.|+.|.+|.+++++||+++|.+|++|+
T Consensus 2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 81 (119)
T 3kz7_A 2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 81 (119)
T ss_dssp CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence 5899999999999998669999999999999999999999998510 0124799999999999999999999999999
Q ss_pred EEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 104 ~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
++.|.|||++|||..+.+ +..|||+++|+|+|+|+++
T Consensus 82 ~~~v~ip~~~aYG~~g~~---~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 82 KARLEIEPEWAYGKKGQP---DAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp EEEEEECGGGTTCTTCBG---GGTBCTTCCEEEEEEEEEE
T ss_pred EEEEEECcHHhcCCCCCC---CCccCcCCeEEEEEEEEEe
Confidence 999999999999999875 1379999999999999987
No 12
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.91 E-value=1e-23 Score=182.85 Aligned_cols=112 Identities=31% Similarity=0.527 Sum_probs=105.5
Q ss_pred ccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcE
Q 008788 25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV 104 (553)
Q Consensus 25 ~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~ 104 (553)
...++|++|+++++|+|...|+.||.|.+||++++.||++|++|+. ++.|+.|.+|.+++++||+++|.+|++|++
T Consensus 15 ~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~ 90 (128)
T 3o5q_A 15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKKGEI 90 (128)
T ss_dssp SSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred ccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHhcCCCCCE
Confidence 3478999999999999986699999999999999999999999987 678999999999999999999999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788 105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (553)
Q Consensus 105 ~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~ 144 (553)
++|.|||++|||..+.+ +.|||+++|+|+|+|+++.
T Consensus 91 ~~v~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~i~ 126 (128)
T 3o5q_A 91 CHLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFK 126 (128)
T ss_dssp EEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred EEEEEChHHcCCCCCCC----CCcCCCCEEEEEEEEEEec
Confidence 99999999999999875 6899999999999999985
No 13
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.91 E-value=1.2e-23 Score=178.56 Aligned_cols=111 Identities=25% Similarity=0.518 Sum_probs=103.9
Q ss_pred ccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcE
Q 008788 25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEV 104 (553)
Q Consensus 25 ~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~ 104 (553)
..+++|++|+++++|+|...|+.||.|.+||++++.||++|++++. ++.|+.|.+|.+++++||+++|.+|++|++
T Consensus 2 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~ 77 (113)
T 1yat_A 2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIGVGQVIKGWDVGIPKLSVGEK 77 (113)
T ss_dssp EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT----TTCCEEEETTSSSSCHHHHHHGGGCCTTCE
T ss_pred CCCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCC----CCCcEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence 4568999999999999987689999999999999989999999986 568999999999999999999999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 105 SMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 105 ~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
++|.|||+++||..+.+ +.||+|++++|+|+|+++
T Consensus 78 ~~v~ip~~~ayG~~~~~----~~Ip~~~~l~f~vel~~i 112 (113)
T 1yat_A 78 ARLTIPGPYAYGPRGFP----GLIPPNSTLVFDVELLKV 112 (113)
T ss_dssp EEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEE
T ss_pred EEEEECHHHCcCCCCCC----CCcCCCCeEEEEEEEEEe
Confidence 99999999999998875 579999999999999987
No 14
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.90 E-value=1.2e-23 Score=183.92 Aligned_cols=114 Identities=28% Similarity=0.553 Sum_probs=105.0
Q ss_pred CCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEE
Q 008788 27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM 106 (553)
Q Consensus 27 ~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~ 106 (553)
+++|++|+++++|+|...|+.||.|++||++++.||++|++++. ++.|+.|.+|.+++++||+++|.+|++|++++
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~ 87 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAE 87 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEE
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCc----CCCCEEEEeCCCCccHHHHHHHhcCCCCCEEE
Confidence 78999999999999985599999999999999889999999986 56899999999999999999999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeecccc
Q 008788 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKI 148 (553)
Q Consensus 107 ~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~~ 148 (553)
|+|||++|||..+.+ +.||++++++|+|+|+++...+.
T Consensus 88 v~ip~~~aYG~~g~~----~~Ip~~~~l~f~v~l~~i~~~~l 125 (135)
T 1r9h_A 88 FTIRSDYGYGDAGSP----PKIPGGATLIFEVELFEWSAEDI 125 (135)
T ss_dssp EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC---
T ss_pred EEEChHHcCCCCCCC----CCcCcCCcEEEEEEEEEeecCCc
Confidence 999999999998875 68999999999999999976543
No 15
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.90 E-value=3.4e-23 Score=180.29 Aligned_cols=112 Identities=27% Similarity=0.462 Sum_probs=104.6
Q ss_pred ccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCC
Q 008788 23 RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG 102 (553)
Q Consensus 23 ~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G 102 (553)
.....++|++|+++++|+|.. |+.||.|++||++++.||++|+++++ ++.|+.|.+|.+++++||+++|.+|++|
T Consensus 22 ~~~~~~~gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~eeaL~gmk~G 96 (133)
T 2y78_A 22 TVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVG 96 (133)
T ss_dssp CCEECTTSCEEEEEECCSSCB-CCTTSEEEEEEEEEETTSCEEEETTT----TTCCEEEETTSSSSCHHHHHHSTTCBTT
T ss_pred CcEECCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEeccCc----CCCCEEEEeCCCChhHHHHHHHcCCCCC
Confidence 456789999999999999986 89999999999999989999999986 6789999999999999999999999999
Q ss_pred cEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 103 ~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
++++|.|||+++||..+.+ ..||||++++|+|+|+++
T Consensus 97 e~~~v~ip~~~aYG~~~~~----~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 97 GVRRLTIPPQLGYGARGAG----GVIPPNATLVFEVELLDV 133 (133)
T ss_dssp CEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred CEEEEEECcHHhCCCCCCC----CCCCCCCeEEEEEEEEEC
Confidence 9999999999999998875 579999999999999875
No 16
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=99.90 E-value=2e-23 Score=191.15 Aligned_cols=134 Identities=25% Similarity=0.384 Sum_probs=113.0
Q ss_pred CCCCCCCCCCChhhhhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceEEEcCC
Q 008788 7 DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGK 85 (553)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~G~ 85 (553)
...|.++.+++.+......++++||+|+++++|+|.. |+.||.|+|||++++. ||++|++|+. ++.|+.|.+|.
T Consensus 27 ~~~~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G~~-~~~Gd~V~v~Y~g~l~~dG~~fdss~~----~~~p~~f~lG~ 101 (180)
T 2f4e_A 27 HSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWH----EQQPIELVLGK 101 (180)
T ss_dssp -------CCSCCCCCSCCEEEETTEEEEEEECCBSCC-BCTTCEEEEEEEEEETTTCCEEEETTT----TTCCEEEETTS
T ss_pred ccCCCCcccCCcccCCCcEECCCceEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCcEEeccCc----cCCCEEEEeCC
Confidence 3344444455555566678889999999999999986 9999999999999987 5999999987 67899999999
Q ss_pred C-ccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeeccc
Q 008788 86 S-KILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147 (553)
Q Consensus 86 ~-~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~~ 147 (553)
+ ++++||+.+|.+|++|+++.|+|||+++||..+.+. ++.||++++|+|+|+|+++..+.
T Consensus 102 g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~--~~~Ip~~s~l~F~VeL~~v~~~~ 162 (180)
T 2f4e_A 102 EKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFS--FPNVPPMADLLYEVEVIGFDETK 162 (180)
T ss_dssp CCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSS--SSCBCTTCCEEEEEEEEEESCBC
T ss_pred CCchhHHHHHHHhCCCCCCEEEEEECchHhCCcCCccc--CCCcCCCCeEEEEEEEEEEecCc
Confidence 9 999999999999999999999999999999988631 15799999999999999997654
No 17
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.90 E-value=3.8e-23 Score=173.77 Aligned_cols=106 Identities=26% Similarity=0.558 Sum_probs=100.0
Q ss_pred ceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEE
Q 008788 30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109 (553)
Q Consensus 30 g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~i 109 (553)
||+|+++++|+|...|+.||.|.+||++++.||++|++++. ++.|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus 1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~i 76 (107)
T 2ppn_A 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76 (107)
T ss_dssp CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEE
Confidence 78999999999987689999999999999989999999986 56899999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 110 p~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
||+++||..+.+ +.||++++++|+|+|+++
T Consensus 77 p~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v 106 (107)
T 2ppn_A 77 SPDYAYGATGHP----GIIPPHATLVFDVELLKL 106 (107)
T ss_dssp CGGGTTTTTCBT----TTBCTTCCEEEEEEEEEE
T ss_pred CHHHccCCCCCC----CCcCCCCeEEEEEEEEEe
Confidence 999999998875 679999999999999987
No 18
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.89 E-value=4.5e-23 Score=178.90 Aligned_cols=114 Identities=32% Similarity=0.549 Sum_probs=105.5
Q ss_pred hccccCCCceEEE--EEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCC
Q 008788 22 RRMKIVPGSLMKA--VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (553)
Q Consensus 22 ~~~~~~~~g~~~~--i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m 99 (553)
.....+++|++|+ ++++|+|...|+.||.|.++|++++.||++|++++. ++.|+.|.+|.+++++||+++|.+|
T Consensus 15 ~~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm 90 (130)
T 2lgo_A 15 QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRS----RGKPFQFTLGAGEVIKGWDQGVATM 90 (130)
T ss_dssp SSCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTT----TTCCEEEETTSTTSCHHHHHHHHHS
T ss_pred ccceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCc----CCCCEEEEeCCCCccHHHHHHHhCC
Confidence 4456679999999 999999997689999999999999889999999986 6689999999999999999999999
Q ss_pred CCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 100 ~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
++|++++|.|||+++||..+.+ +.|||+++++|+|+|+++
T Consensus 91 ~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 91 TLGEKALFTIPYQLAYGERGYP----PVIPPKATLVFEVELLAV 130 (130)
T ss_dssp CTTEEEEEEECTTTSTTTTCCS----TTSCSSCCEEEEEEEEEC
T ss_pred CCCCEEEEEECcHHHCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence 9999999999999999998875 679999999999999875
No 19
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.89 E-value=6.6e-23 Score=184.74 Aligned_cols=115 Identities=23% Similarity=0.398 Sum_probs=106.5
Q ss_pred hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (553)
Q Consensus 22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~ 101 (553)
....++++||+|+++++|+|...|..||.|.|||++++.||++|++++. ++.|+.|.+ +++|+||+++|.+|++
T Consensus 30 ~~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~ 103 (167)
T 1jvw_A 30 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPTTFRP--NEVIKGWTEALQLMRE 103 (167)
T ss_dssp TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH----HTSCEEECG--GGSCHHHHHHHTTCCT
T ss_pred CCcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEe--CchhHHHHHHHcCCCC
Confidence 4677899999999999999987689999999999999889999999987 678999999 5899999999999999
Q ss_pred CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeecc
Q 008788 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146 (553)
Q Consensus 102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~~ 146 (553)
|++++|+|||++|||..+.+ +.||||++|+|+|+|+++.+.
T Consensus 104 Ge~~~~~Ip~~laYG~~g~~----~~Ipp~s~LiF~VeL~~i~~~ 144 (167)
T 1jvw_A 104 GDRWRLFIPYDLAYGVTGGG----GMIPPYSPLEFDVELISIKDG 144 (167)
T ss_dssp TCEEEEEECGGGTTTTTCSS----SSSCTTCCEEEEEEEEEEGGG
T ss_pred CCEEEEEECchhhCCCCCCC----CCcCCCCeEEEEEEEEEEEcC
Confidence 99999999999999998875 679999999999999999753
No 20
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=174.63 Aligned_cols=116 Identities=23% Similarity=0.357 Sum_probs=104.5
Q ss_pred hccccCCCceEEEEEecCC--CCCCCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCC
Q 008788 22 RRMKIVPGSLMKAVMRPGG--GDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98 (553)
Q Consensus 22 ~~~~~~~~g~~~~i~~~G~--g~~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~ 98 (553)
....+.++|++|+++++|+ |.. |+.||.|.+||++++. ||++|++|+.. +.+.|+.|.+|.+++++||+++|.+
T Consensus 5 ~~~~~~~~gl~~~~l~~g~~~g~~-~~~gd~V~v~Y~g~~~~dG~~fdss~~~--~~~~p~~f~lG~~~~i~G~e~~l~g 81 (125)
T 4dip_A 5 MGALIPEPEVKIEVLQKPFICHRK-TKGGDLMLVHYEGYLEKDGSLFHSTHKH--NNGQPIWFTLGILEALKGWDQGLKG 81 (125)
T ss_dssp CGGGCCCCCCEEEEEECCSCCSCC-CCTTCEEEEEEEEEETTTCCEEEEHHHH--TTTCCEEEETTSCSSCHHHHHHSTT
T ss_pred CceEECCCCeEEEEEEcCCCCCCc-CCCCCEEEEEEEEEECCCCcEEEEcccC--CCCcCEEEEeCCCChhHHHHHHHhC
Confidence 3456789999999999998 555 9999999999999998 99999999841 1358999999999999999999999
Q ss_pred CCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788 99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145 (553)
Q Consensus 99 m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~ 145 (553)
|++|+++.|.|||++|||..+. +.||++++|+|+|+|+++.+
T Consensus 82 m~~Ge~~~~~ip~~~aYG~~g~-----~~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 82 MCVGEKRKLIIPPALGYGKEGK-----GKIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp CCTTCEEEEEECGGGTTTTTCB-----TTBCTTCCEEEEEEEEEEEC
T ss_pred CCCCCEEEEEEChHHhcCCCCC-----CCCCCCCeEEEEEEEEEEEc
Confidence 9999999999999999999885 47999999999999999864
No 21
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=181.65 Aligned_cols=116 Identities=27% Similarity=0.403 Sum_probs=100.0
Q ss_pred hhhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCC
Q 008788 20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98 (553)
Q Consensus 20 ~~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~ 98 (553)
......++++||+|+++++|+|.. ++.||.|.+||++++. +|++|++++. ++.|+.|.+|.+++++||+++|.+
T Consensus 17 ~~~~~v~~~~gl~~~vl~~G~g~~-~~~gd~V~v~Y~g~l~~~G~~fdss~~----~~~p~~f~lG~g~~i~G~e~aL~g 91 (134)
T 3b7x_A 17 QRMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMDRPFDSNYF----RKTPRLMKLGEDITLWGMELGLLS 91 (134)
T ss_dssp TTCEESSSSSSEEEEEEECCEEEE-CCTTCEEEEEEEEECTTCSSCSEEC-----------CEEC-CCCCCHHHHHHHHT
T ss_pred cccceeeCCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCeEEEecCC----CCCCEEEEcCCcchhHHHHHHHhC
Confidence 344566789999999999999997 7899999999999987 6999999986 678999999999999999999999
Q ss_pred CCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788 99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (553)
Q Consensus 99 m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~ 144 (553)
|++|++++|+|||++|||..+.+ +.||||++++|+|+|+++.
T Consensus 92 m~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 92 MRRGELARFLFKPNYAYGTLGCP----PLIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp CEETCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEEEECHHHCcCCCCCC----CCcCcCCeEEEEEEEEEEe
Confidence 99999999999999999998875 5699999999999999984
No 22
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.89 E-value=4.5e-23 Score=179.07 Aligned_cols=121 Identities=22% Similarity=0.409 Sum_probs=105.7
Q ss_pred hhhhhccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcC
Q 008788 18 EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP 97 (553)
Q Consensus 18 ~~~~~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~ 97 (553)
|+.......+++||+|+++++|+|.. |+.||.|++||++++.||++|++|+. ++.|+.|.+|.+++++||+++|.
T Consensus 1 ~~~~~~~~~~~~Gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~~i~G~~~~L~ 75 (129)
T 1u79_A 1 ETTSCEFSVSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYN----RGKPLTFRIGVGEVIKGWDQGIL 75 (129)
T ss_dssp ----CCCEECTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHH
T ss_pred CCCCCccEECCCCeEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCCccHHHHHHhc
Confidence 34566778899999999999999987 89999999999999889999999986 56899999999999999999999
Q ss_pred C------CCCCcEEEEEEcCCCccCCCCCCCC-CCCCCCCCCeEEEEEEEEee
Q 008788 98 T------MLKGEVSMFKMKPQMHYGEDDCPVA-APSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 98 ~------m~~G~~~~~~ip~~~a~g~~~~~~~-~~~~i~~~~~l~~~v~l~~~ 143 (553)
+ |++|++++|.|||+++||..+.+.. .+..||||++++|+|+|+++
T Consensus 76 G~~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 76 GSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp CBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred ccccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 8 9999999999999999999875210 01369999999999999986
No 23
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.88 E-value=1.5e-22 Score=206.12 Aligned_cols=267 Identities=15% Similarity=0.190 Sum_probs=197.9
Q ss_pred ccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCC---ccchHHHhhccCCcCcEEE
Q 008788 149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAV 225 (553)
Q Consensus 149 ~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~---~~~g~~~~l~~mk~Ge~~~ 225 (553)
+..|.++.+.++++|+|..+|..|+.|+|||++++ +|++|+++ |+.|.+|.|. ++++|+++|.+|++||++.
T Consensus 21 ~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~ 95 (336)
T 1p5q_A 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI 95 (336)
T ss_dssp -CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred ecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC----CeEEEeCCCCccccchHHHHHHhcCCCCCeEE
Confidence 34688999999999999778999999999999988 99999986 9999999887 5899999999999999999
Q ss_pred EEEeCCccCCCCCCC--CCCCCceEEEEEEEeeeeeeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecC
Q 008788 226 IYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNE 303 (553)
Q Consensus 226 ~~v~~~~~~g~~~~~--~i~~~~~l~~~v~l~~~~~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~ 303 (553)
+.|+|+++||..+.. .||+++++.|++.|.++.+..+.+... +. ..| . ....+ ..
T Consensus 96 l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a------~~----~~p----~---~a~~~------~~ 152 (336)
T 1p5q_A 96 VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMN------SE----EKL----E---QSTIV------KE 152 (336)
T ss_dssp EEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCC------HH----HHH----H---HHHHH------HH
T ss_pred EEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCC------HH----HHH----H---HHHHH------HH
Confidence 999999999986544 689999999999999996543322100 00 000 0 00000 00
Q ss_pred CCcEEEeccCCCCCCCeEEEeCC-CCchhHHHHHHhcCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeec
Q 008788 304 EKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382 (553)
Q Consensus 304 ~g~~~~~s~~~~~~~~~~f~lG~-~~v~~g~e~~l~~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~ 382 (553)
-|... +..|+ ..-+..++.++.... .. ..+ .
T Consensus 153 ~g~~~-------------~~~g~~~~A~~~y~~Al~~~p-----------~~--------------~~~---------~- 184 (336)
T 1p5q_A 153 RGTVY-------------FKEGKYKQALLQYKKIVSWLE-----------YE--------------SSF---------S- 184 (336)
T ss_dssp HHHHH-------------HHHTCHHHHHHHHHHHHHHTT-----------TC--------------CCC---------C-
T ss_pred HHHHH-------------HHCCCHHHHHHHHHHHHHHhh-----------cc--------------ccC---------C-
Confidence 01100 11111 113444555553321 10 000 0
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC
Q 008788 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE 462 (553)
Q Consensus 383 ~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~ 462 (553)
.....+.....+..+.+.|..+++.|+|++|+..|++|++ ++|.+ ..+++++|.||+.+++
T Consensus 185 ----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~ 245 (336)
T 1p5q_A 185 ----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVND 245 (336)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTC
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHCCC
Confidence 0000111122467788999999999999999999999999 67766 6789999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 008788 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEMMMKV 510 (553)
Q Consensus 463 ~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A-~~~l~~al~l 510 (553)
|++|+.++++|++++|++..+++.++.++..++++++| ...|++++..
T Consensus 246 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 5567766643
No 24
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.88 E-value=3.8e-22 Score=173.40 Aligned_cols=116 Identities=22% Similarity=0.534 Sum_probs=101.3
Q ss_pred hccccCCCce-EEEEEecC-CC-CCCCCCCCEEEEEEEEEe-cCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcC
Q 008788 22 RRMKIVPGSL-MKAVMRPG-GG-DSTPSDGDQVAYHCTVRT-LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP 97 (553)
Q Consensus 22 ~~~~~~~~g~-~~~i~~~G-~g-~~~~~~gd~V~v~y~~~~-~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~ 97 (553)
....++++|+ +++++++| .| ...|+.||.|.+||++++ .||++|++|+. ++.|+.|.+|.+++++||+++|.
T Consensus 8 ~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~----~~~p~~f~lG~g~~i~g~e~~l~ 83 (129)
T 2vn1_A 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD----RNVPFKFHLEQGEVIKGWDICVS 83 (129)
T ss_dssp EEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG----TTCCEEEETTSSSSCHHHHHHHT
T ss_pred CCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC----CCccEEEEeCCCCcCHHHHHHHh
Confidence 3445555554 55799977 55 234899999999999998 79999999987 67899999999999999999999
Q ss_pred CCCCCcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788 98 TMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145 (553)
Q Consensus 98 ~m~~G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~ 145 (553)
+|++|+++.|.|||+++||..+.+ +.||||++++|+|+|+++..
T Consensus 84 gm~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 84 SMRKNEKCLVRIESMYGYGDEGCG----ESIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp TCCTTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred CCCCCCEEEEEEChHHcCCCCCCC----CCcCCCCeEEEEEEEEEEec
Confidence 999999999999999999998875 67999999999999999965
No 25
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=99.88 E-value=6e-23 Score=183.18 Aligned_cols=120 Identities=21% Similarity=0.331 Sum_probs=99.5
Q ss_pred ccCCCceEEEEEecCCCCC-CCCCCCEEEEEEEEEecC--CcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788 25 KIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (553)
Q Consensus 25 ~~~~~g~~~~i~~~G~g~~-~~~~gd~V~v~y~~~~~~--g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~ 101 (553)
+++++||+|+|+++|+|+. .+.+||.|++||++++.| |++||||++ ++.|+.|.+|.+++|+||+++|.+|++
T Consensus 6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~----rg~P~~f~lG~g~vI~Gwd~gl~~M~~ 81 (165)
T 2lkn_A 6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA----RGKPMELIIGKKFKLPVWETIVCTMRE 81 (165)
T ss_dssp HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT----TTCCEEEESSSSCSCSHHHHHHTTCCT
T ss_pred cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc----CCCCEEEEecCCCccHHHHHHHhcCcc
Confidence 5678999999999999985 246899999999999954 999999998 889999999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCC-------CCC-CCCCC-------------------------CCCCCCeEEEEEEEEeeecccc
Q 008788 102 GEVSMFKMKPQMHYGED-------DCP-VAAPS-------------------------TFPKDEELHFEIEMIDFAKAKI 148 (553)
Q Consensus 102 G~~~~~~ip~~~a~g~~-------~~~-~~~~~-------------------------~i~~~~~l~~~v~l~~~~~~~~ 148 (553)
|++++|+|||++|||.. ..+ ...|. -|+++++|+|+|||++|..+..
T Consensus 82 Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e 161 (165)
T 2lkn_A 82 GEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT 161 (165)
T ss_dssp TCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred CceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence 99999999999999920 000 00000 0344578999999999976543
No 26
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.88 E-value=4e-22 Score=186.89 Aligned_cols=111 Identities=27% Similarity=0.472 Sum_probs=105.1
Q ss_pred cccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCc
Q 008788 24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103 (553)
Q Consensus 24 ~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~ 103 (553)
..++++|++|+++++|+|.. |+.||.|.+||++++.||++|++++. ++.|+.|.+|.+++++||+++|.+|++|+
T Consensus 99 ~~~~~sGl~~~vl~~G~G~~-~~~gd~V~v~Y~g~l~dG~~fdss~~----~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge 173 (209)
T 3uf8_A 99 VVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGG 173 (209)
T ss_dssp CEECTTSCEEEEEECCCSCB-CCTTCEEEEEEEEEETTSCEEEESGG----GTCCEEEETTSSSSCHHHHHHHTTCBTTC
T ss_pred ccCCCCceEEEEEEcCCCCc-CCCCCEEEEEEEEEECCCCEEEEccc----cCCCEEEEeCCCccchhHHHHHhCCCCCC
Confidence 56689999999999999998 99999999999999999999999987 68899999999999999999999999999
Q ss_pred EEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 104 ~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
+++|.|||++|||..+.+ +.|||+++|+|+|+|+++
T Consensus 174 ~~~v~Ipp~~aYG~~g~~----~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 174 VRRLTIPPQLGYGARGAA----GVIPPNATLVFEVELLDV 209 (209)
T ss_dssp EEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred EEEEEECcHHhCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence 999999999999999875 569999999999999975
No 27
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.88 E-value=4.6e-22 Score=173.94 Aligned_cols=120 Identities=32% Similarity=0.495 Sum_probs=101.8
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (553)
Q Consensus 151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~ 229 (553)
.+.++.++++++|.|...|+.||.|+|||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip 91 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR 91 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 67899999999999966799999999999999999999999863 68999999999999999999999999999999999
Q ss_pred CCccCCCC-CCCCCCCCceEEEEEEEeeeeeeeecc--CCCceEE
Q 008788 230 SQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIK 271 (553)
Q Consensus 230 ~~~~~g~~-~~~~i~~~~~l~~~v~l~~~~~~~d~~--~dg~l~k 271 (553)
|+++||+. .++.||++++|+|+|+|+++.. .|+. +||+|+|
T Consensus 92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k 135 (135)
T 1r9h_A 92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSA-EDISPDRDGTILR 135 (135)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred hHHcCCCCCCCCCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence 99999985 4478999999999999999976 4777 8888876
No 28
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.88 E-value=3.6e-22 Score=180.50 Aligned_cols=155 Identities=21% Similarity=0.355 Sum_probs=130.0
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~----~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (553)
.+++++.+..+++.|+.+|+.|+|.+|+..|.+|+..+... .|.+ +++.........+|+|+|.||+++++|.+|
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE-PEWVELDRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS-HHHHHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35678899999999999999999999999999999976542 2333 344455666788999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008788 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR 546 (553)
Q Consensus 467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (553)
+.+|++||+++|+++++||++|.+|..+|+|++|+.+|++|++++|++...++..|..|..++++.+++++++|++||+.
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~ 162 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQP 162 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC--------
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999854789999999999999999999999999963
No 29
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=99.88 E-value=3.8e-22 Score=186.70 Aligned_cols=113 Identities=26% Similarity=0.439 Sum_probs=105.0
Q ss_pred hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (553)
Q Consensus 22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~ 101 (553)
....++++|++|+++++|+|.. |..||.|+|||++++.||++|++++. ++.|+.|.+ +++|+||+++|.+|++
T Consensus 99 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~ 171 (213)
T 1fd9_A 99 PGVVVLPSGLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQV--SQVIPGWTEALQLMPA 171 (213)
T ss_dssp TTEEECTTSCEEEEEECCCSCC-CCTTCEEEEEEEEEETTSCEEEEHHH----HCSCEEEEG--GGSCHHHHHHHTTCCT
T ss_pred CCcEECCCccEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEc--CchhhHHHHHHcCCCC
Confidence 3567889999999999999987 99999999999999999999999987 678999999 5899999999999999
Q ss_pred CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeeec
Q 008788 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145 (553)
Q Consensus 102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~~ 145 (553)
|++++|+|||+++||..+.+ +.|||+++++|+|+|+++.+
T Consensus 172 Gek~~v~IP~~laYG~~g~~----~~Ipp~stLiF~VeLl~v~~ 211 (213)
T 1fd9_A 172 GSTWEIYVPSGLAYGPRSVG----GPIGPNETLIFKIHLISVKK 211 (213)
T ss_dssp TCEEEEEECGGGTTTTCCCS----SSCCTTCCEEEEEEEEEEEC
T ss_pred CCEEEEEECchhccCccCCC----CCCCCCCeEEEEEEEEEEEc
Confidence 99999999999999998864 67999999999999999864
No 30
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=99.87 E-value=4.1e-22 Score=186.12 Aligned_cols=109 Identities=21% Similarity=0.353 Sum_probs=101.3
Q ss_pred hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (553)
Q Consensus 22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~ 101 (553)
....++++||+|+++++|+|.. |..||.|.|||++++.||++|+|| . .|+.|.+| ++|+||+++|.+|++
T Consensus 110 ~gv~~~~sGl~y~vl~~G~G~~-p~~gd~V~V~Y~g~l~dG~vfDss-~------~P~~f~lG--~vI~G~eeaL~gMk~ 179 (219)
T 3oe2_A 110 PGVKELADGILMTELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS-T------QPQWFRLD--SVISGWTSALQNMPT 179 (219)
T ss_dssp TTCEECGGGCEEEEEECCCSCC-CCTTSEEEEEEEEECTTSCEEEEC-S------SCEEEEGG--GSCHHHHHHHTTCCT
T ss_pred CCcEECCCCeEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEeecc-C------CcEEEEec--chhHHHHHHHhCCCC
Confidence 4467889999999999999987 999999999999999999999988 3 59999996 899999999999999
Q ss_pred CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (553)
Q Consensus 102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~ 144 (553)
|++++|+|||++|||..+.+ +.|||+++|+|+|+|++|.
T Consensus 180 Gek~~v~IPp~lAYG~~g~~----~~IPpnstLvFeVeLl~Ik 218 (219)
T 3oe2_A 180 GAKWRLVIPSDQAYGAEGAG----DLIDPFTPLVFEIELIAVS 218 (219)
T ss_dssp TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred CCEEEEEECchhcCCCCCCC----CCCCCCCeEEEEEEEEEEe
Confidence 99999999999999999875 5799999999999999985
No 31
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=179.13 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=98.6
Q ss_pred cCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhcCCCC
Q 008788 264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343 (553)
Q Consensus 264 ~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~M~~G 343 (553)
+.+.+|+|+++++|.|..|. +..|++|+|||+|+|.|++|++|++ +.+ +++|++|.+|.++||+||+.+|.+|++|
T Consensus 7 ~~~~Gv~~~vl~~G~G~~p~--~~~G~~V~vhY~g~l~d~~G~~FDs-S~~-rg~P~~f~lG~g~vI~Gwd~gl~~M~~G 82 (165)
T 2lkn_A 7 LREDGIQKRVIQEGRGELPD--FQDGTKATFHYRTLHSDDEGTVLDD-SRA-RGKPMELIIGKKFKLPVWETIVCTMREG 82 (165)
T ss_dssp HHTTSCCCCEEECCSSCCCC--CCTTCEEEEECEEECSSSSCCEEEE-STT-TTCCEEEESSSSCSCSHHHHHHTTCCTT
T ss_pred ccCCCeEEEEEECCcCCCCC--CCCCCEEEEEEEEEEeCCCccEEEe-ccc-CCCCEEEEecCCCccHHHHHHHhcCccC
Confidence 45677999999999998652 2479999999999998878999955 444 6899999999999999999999999999
Q ss_pred cEEEEEeCCCCcccC--------CCCCCC-----------------------------CCCCCeEEEEEEEeeeecCCCC
Q 008788 344 EIALVTCPPDYAYDK--------FLRPAN-----------------------------VPEGAHIQWEIELLGFEKPKDW 386 (553)
Q Consensus 344 E~~~~~~~~~~~yg~--------~g~~~~-----------------------------ip~~~~l~~~ieL~~~~~~~~~ 386 (553)
|++.|+|||++|||. ...... +++.++|+|+|||++++.|.++
T Consensus 83 e~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~ey 162 (165)
T 2lkn_A 83 EIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTY 162 (165)
T ss_dssp CEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTC
T ss_pred ceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCccc
Confidence 999999999999982 100111 2223679999999999998765
Q ss_pred C
Q 008788 387 T 387 (553)
Q Consensus 387 ~ 387 (553)
.
T Consensus 163 e 163 (165)
T 2lkn_A 163 Q 163 (165)
T ss_dssp C
T ss_pred c
Confidence 3
No 32
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.87 E-value=9.4e-22 Score=168.10 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=98.6
Q ss_pred cccCCCc-eEEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788 24 MKIVPGS-LMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (553)
Q Consensus 24 ~~~~~~g-~~~~i~~~G~g~-~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~ 101 (553)
..++++| ++|+++++|+|. ..|+.||.|++||++++.||++|+++ .|+.|.+|.+++++||+++|.+|++
T Consensus 7 ~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~--------~p~~f~lG~~~~i~g~e~~l~gm~~ 78 (118)
T 2awg_A 7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPLMDV 78 (118)
T ss_dssp EESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE--------EEEEEETTSSCSCHHHHHHGGGSCT
T ss_pred eEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC--------CCEEEEECCCChhHHHHHHHhCCCC
Confidence 3444556 999999999997 34899999999999998899999963 4899999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 008788 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (553)
Q Consensus 102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~~ 144 (553)
|+++.|.|||+++||..+.+ +.|||+++++|+|+|+++.
T Consensus 79 Ge~~~~~ip~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 79 GETAMVTADSKYCYGPQGRS----PYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred CCEEEEEEChHHccCCCCCC----CccCCCCeEEEEEEEEEec
Confidence 99999999999999998875 6799999999999999984
No 33
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=173.96 Aligned_cols=110 Identities=23% Similarity=0.358 Sum_probs=99.8
Q ss_pred cCCCce-EEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCc
Q 008788 26 IVPGSL-MKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103 (553)
Q Consensus 26 ~~~~g~-~~~i~~~G~g~-~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~ 103 (553)
++++|+ +|+++++|+|. ..|+.||.|+|||++++.||++|+|+ .|+.|.+|.+++++||+++|.+|++|+
T Consensus 39 ~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~--------~p~~f~lG~g~vi~G~eeaL~gMk~Ge 110 (157)
T 2jwx_A 39 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPLMDVGE 110 (157)
T ss_dssp SSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE--------EEEEEETTTTSSCHHHHHHTTTSCTTC
T ss_pred ECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC--------CCEEEEeCCCChhHHHHHHHcCCCCCC
Confidence 567776 89999999997 34999999999999999899999964 489999999999999999999999999
Q ss_pred EEEEEEcCCCccCCCC-CCCCCCCCCCCCCeEEEEEEEEeeeccc
Q 008788 104 VSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAK 147 (553)
Q Consensus 104 ~~~~~ip~~~a~g~~~-~~~~~~~~i~~~~~l~~~v~l~~~~~~~ 147 (553)
+++|+|||+++||..+ .+ +.||||++|+|+|+|+++....
T Consensus 111 ~~~v~IP~~~aYG~~g~~~----~~IPp~stLiF~VeL~~i~~~~ 151 (157)
T 2jwx_A 111 TAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDLE 151 (157)
T ss_dssp EEEEEECGGGTTTTTCCSS----SCCCTTCCEEEEEEEEEEEECS
T ss_pred EEEEEECchhcCCcccccC----CCcCCCCeEEEEEEEEEEEccc
Confidence 9999999999999988 43 6799999999999999997643
No 34
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.87 E-value=2.2e-21 Score=166.21 Aligned_cols=106 Identities=23% Similarity=0.374 Sum_probs=98.6
Q ss_pred CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC--------CCceEEEcCCCCccchHHHhhccCCcCcE
Q 008788 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE--------GEPYFFTFGKSEVPKGLEMGIGTMTREEK 223 (553)
Q Consensus 152 d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~--------~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~ 223 (553)
..++.++++++|+|...|+.||.|+|||++++.||++|+++.. +.|+.|.+|.+++++||+++|.+|++||+
T Consensus 3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~ 82 (119)
T 3kz7_A 3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK 82 (119)
T ss_dssp SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence 4689999999999977899999999999999999999999864 48999999999999999999999999999
Q ss_pred EEEEEeCCccCCCCCCC--CCCCCceEEEEEEEeee
Q 008788 224 AVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHL 257 (553)
Q Consensus 224 ~~~~v~~~~~~g~~~~~--~i~~~~~l~~~v~l~~~ 257 (553)
++|+|||+++||+.+.+ .||++++|+|+|+|+++
T Consensus 83 ~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 83 ARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp EEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred EEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence 99999999999997543 79999999999999987
No 35
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=99.86 E-value=1.9e-21 Score=183.19 Aligned_cols=110 Identities=25% Similarity=0.545 Sum_probs=102.3
Q ss_pred hccccCCCceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCC
Q 008788 22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (553)
Q Consensus 22 ~~~~~~~~g~~~~i~~~G~g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~ 101 (553)
+...++++|++|+++++|+|.. |..||.|+|||++++.||++|+|++. ++.|+.|.+ +++|+||+++|.+|++
T Consensus 114 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~ 186 (224)
T 1q6h_A 114 KGVKTSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIKK 186 (224)
T ss_dssp TTEEECTTSCEEEEEECCSSCC-CCTTCEEEEEEEEEETTSCEEEEGGG----GTSCEEEEG--GGSCHHHHHHGGGSCT
T ss_pred CCeEECCCceEEEEEecccCcc-ccCCCEEEEEEEEEeCCCCEEeeccc----cCCCEEEEc--CCcchhHHHHHcCCCC
Confidence 4556789999999999999987 99999999999999999999999997 678999999 5899999999999999
Q ss_pred CcEEEEEEcCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 102 G~~~~~~ip~~~a~g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
|++++|+|||+++||..+.+ + ||||++++|+|+|+++
T Consensus 187 Gek~~v~IP~~laYG~~g~~----~-IPp~stLiF~VeL~~i 223 (224)
T 1q6h_A 187 GGKIKLVIPPELAYGKAGVP----G-IPPNSTLVFDVELLDV 223 (224)
T ss_dssp TCEEEEEECGGGTTTTTCBT----T-BCTTCCEEEEEEEEEE
T ss_pred CCEEEEEECchhhcCcCCCC----C-CCCCCEEEEEEEEEEe
Confidence 99999999999999998864 4 9999999999999987
No 36
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=170.99 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=102.7
Q ss_pred hhhhccccCCCceEEEEEecCCCC-CCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcC
Q 008788 19 DDKRRMKIVPGSLMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP 97 (553)
Q Consensus 19 ~~~~~~~~~~~g~~~~i~~~G~g~-~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~ 97 (553)
++++...+.+++++|+++++|+|. ..|+.||.|.+||++++.||++|+++ .|+.|.+|.+++++||+++|.
T Consensus 7 ~~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~--------~p~~f~lG~g~~i~G~e~~L~ 78 (135)
T 2d9f_A 7 GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVP 78 (135)
T ss_dssp CSSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE--------EEEEEETTSCCSCTTTTTTGG
T ss_pred cccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC--------CCEEEEeCCCChhHHHHHHHh
Confidence 344445554444999999999997 34899999999999999899999963 489999999999999999999
Q ss_pred CCCCCcEEEEEEcCCCccCCCC-CCCCCCCCCCCCCeEEEEEEEEeeecccc
Q 008788 98 TMLKGEVSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAKI 148 (553)
Q Consensus 98 ~m~~G~~~~~~ip~~~a~g~~~-~~~~~~~~i~~~~~l~~~v~l~~~~~~~~ 148 (553)
+|++|+++.|.|||+++||..+ .+ +.|||+++++|+|+|+++....+
T Consensus 79 gm~~Ge~~~v~ip~~~aYG~~~~~~----~~Ip~~~~l~f~vel~~v~~~~~ 126 (135)
T 2d9f_A 79 LMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDRPD 126 (135)
T ss_dssp GSCTTCEEEEEECHHHHTCTTCCSS----SCCCTTCCEEEEEEEEEEESSCS
T ss_pred CCCCCCEEEEEEChhHccCcCCcCC----CccCCCCeEEEEEEEEEeecCCc
Confidence 9999999999999999999987 43 67999999999999999976543
No 37
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=99.86 E-value=4.1e-21 Score=169.71 Aligned_cols=108 Identities=31% Similarity=0.474 Sum_probs=101.5
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (553)
Q Consensus 151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~ 229 (553)
.|.++.+.++++|.|...|+.||.|+|||++++.||++|+++. .+.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus 33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip 112 (144)
T 3o5e_A 33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 112 (144)
T ss_dssp CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence 6889999999999997689999999999999999999999986 478999999999999999999999999999999999
Q ss_pred CCccCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788 230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLI 258 (553)
Q Consensus 230 ~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~ 258 (553)
|+++||..+ ++.||++++|+|+|+|++|.
T Consensus 113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik 142 (144)
T 3o5e_A 113 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 142 (144)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred hHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence 999999864 46899999999999999985
No 38
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.85 E-value=5.2e-21 Score=165.81 Aligned_cols=108 Identities=31% Similarity=0.474 Sum_probs=101.2
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (553)
Q Consensus 151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~ 229 (553)
.|.++.+.++++|.|...|+.||.|+|||++++.||++|+++. +++|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus 17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip 96 (128)
T 3o5q_A 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 96 (128)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 6789999999999996689999999999999999999999985 478999999999999999999999999999999999
Q ss_pred CCccCCCCC-CCCCCCCceEEEEEEEeeee
Q 008788 230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLI 258 (553)
Q Consensus 230 ~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~ 258 (553)
|+++||..+ ++.||++++|+|+|+|+++.
T Consensus 97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~ 126 (128)
T 3o5q_A 97 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 126 (128)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred hHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence 999999864 46899999999999999985
No 39
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=164.59 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=102.5
Q ss_pred ccCCCCeEEEEEecCCC-cCCCCCCceEEEEEEEEeC-CCcEEeecC---CCCceEEEcCCCCccchHHHhhccCCcCcE
Q 008788 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTG-DGKLILSHR---EGEPYFFTFGKSEVPKGLEMGIGTMTREEK 223 (553)
Q Consensus 149 ~~~d~g~~~~i~~~g~g-~~~~~~gd~V~v~y~~~~~-~g~~~~s~~---~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~ 223 (553)
...+.++.++++++|.+ ...|+.||.|+|||++++. ||++|+++. .++|+.|.+|.+++++||+++|.+|++||+
T Consensus 8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~ 87 (125)
T 4dip_A 8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK 87 (125)
T ss_dssp GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence 34678999999999982 2889999999999999998 999999986 579999999999999999999999999999
Q ss_pred EEEEEeCCccCCCCCCCCCCCCceEEEEEEEeeeee
Q 008788 224 AVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQ 259 (553)
Q Consensus 224 ~~~~v~~~~~~g~~~~~~i~~~~~l~~~v~l~~~~~ 259 (553)
++|.|||+++||+.+.+.||+|++|+|+|+|+++.+
T Consensus 88 ~~~~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 88 RKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp EEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred EEEEEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEc
Confidence 999999999999987779999999999999999863
No 40
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=99.85 E-value=8e-21 Score=173.92 Aligned_cols=126 Identities=30% Similarity=0.456 Sum_probs=101.0
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCC-CchhHHHHHHhcCCCCc
Q 008788 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGE 344 (553)
Q Consensus 266 dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~-~v~~g~e~~l~~M~~GE 344 (553)
+++|.++++++|.|..| ..|+.|+|||.+++.+ +|++|++|+ . +++|+.|.+|.+ .+++||+.+|.+|++||
T Consensus 48 ~~gl~~~vl~~G~G~~~----~~Gd~V~v~Y~g~l~~-dG~~fdss~-~-~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge 120 (180)
T 2f4e_A 48 DEKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKFEDTW-H-EQQPIELVLGKEKKELAGLAIGVASMKSGE 120 (180)
T ss_dssp ETTEEEEEEECCBSCCB----CTTCEEEEEEEEEETT-TCCEEEETT-T-TTCCEEEETTSCCGGGHHHHHHHTTCCBTC
T ss_pred CCceEEEEEeCCCCCCC----CCCCEEEEEEEEEECC-CCcEEeccC-c-cCCCEEEEeCCCCchhHHHHHHHhCCCCCC
Confidence 45799999999999854 7899999999999875 489985553 3 478999999999 99999999999999999
Q ss_pred EEEEEeCCCCcccCCCC--CCCCCCCCeEEEEEEEeeeecCCC---CCCCChhhHHHHH
Q 008788 345 IALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEA 398 (553)
Q Consensus 345 ~~~~~~~~~~~yg~~g~--~~~ip~~~~l~~~ieL~~~~~~~~---~~~~~~~e~~~~a 398 (553)
++.|.|||+++||..+. ++.||++++++|+|+|+++..+.+ .|.|+.++++..|
T Consensus 121 ~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A 179 (180)
T 2f4e_A 121 RALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA 179 (180)
T ss_dssp EEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred EEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence 99999999999999886 457999999999999999998877 7899999998776
No 41
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.85 E-value=1.5e-20 Score=159.48 Aligned_cols=106 Identities=23% Similarity=0.323 Sum_probs=98.0
Q ss_pred CCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeC
Q 008788 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTS 230 (553)
Q Consensus 152 d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~ 230 (553)
++|+.+.++++|.|...|+.||.|++||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||++++.|||
T Consensus 5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip~ 84 (113)
T 1yat_A 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG 84 (113)
T ss_dssp GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECG
T ss_pred CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECH
Confidence 4689999999999954499999999999999999999999865 689999999999999999999999999999999999
Q ss_pred CccCCCCC-CCCCCCCceEEEEEEEeee
Q 008788 231 QYLTPSPL-MPVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 231 ~~~~g~~~-~~~i~~~~~l~~~v~l~~~ 257 (553)
+++||+.. ++.||++++|+|+|+|+++
T Consensus 85 ~~ayG~~~~~~~Ip~~~~l~f~vel~~i 112 (113)
T 1yat_A 85 PYAYGPRGFPGLIPPNSTLVFDVELLKV 112 (113)
T ss_dssp GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred HHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence 99999864 4569999999999999987
No 42
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.84 E-value=1.5e-20 Score=157.90 Aligned_cols=104 Identities=27% Similarity=0.442 Sum_probs=96.0
Q ss_pred CeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCc
Q 008788 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY 232 (553)
Q Consensus 154 g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~ 232 (553)
|+.++++++|.|...|+.||.|++||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||++++.|||++
T Consensus 1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ 80 (107)
T 2ppn_A 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80 (107)
T ss_dssp CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence 57899999999955599999999999999999999999863 68999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCCCCCceEEEEEEEeee
Q 008788 233 LTPSPL-MPVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 233 ~~g~~~-~~~i~~~~~l~~~v~l~~~ 257 (553)
+||+.. ++.||++++|+|+|+|+++
T Consensus 81 ayG~~~~~~~Ip~~~~l~f~v~l~~v 106 (107)
T 2ppn_A 81 AYGATGHPGIIPPHATLVFDVELLKL 106 (107)
T ss_dssp TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence 999864 4679999999999999987
No 43
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.84 E-value=2.2e-20 Score=162.50 Aligned_cols=107 Identities=23% Similarity=0.321 Sum_probs=99.3
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (553)
Q Consensus 150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v 228 (553)
..+.++.+.++++|.| ..|+.||.|+|||++++.||++|+++.+ ++|+.|.+|.+++++||+++|.+|++||+++|+|
T Consensus 25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i 103 (133)
T 2y78_A 25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI 103 (133)
T ss_dssp ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence 4567999999999999 7899999999999999999999999864 6899999999999999999999999999999999
Q ss_pred eCCccCCCCCC-CCCCCCceEEEEEEEeee
Q 008788 229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 229 ~~~~~~g~~~~-~~i~~~~~l~~~v~l~~~ 257 (553)
||+++||+.+. +.||||++|+|+|+|+++
T Consensus 104 p~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 104 PPQLGYGARGAGGVIPPNATLVFEVELLDV 133 (133)
T ss_dssp CGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred CcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence 99999998654 469999999999999875
No 44
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=155.46 Aligned_cols=98 Identities=24% Similarity=0.465 Sum_probs=89.9
Q ss_pred CCCCCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCC
Q 008788 41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120 (553)
Q Consensus 41 g~~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~ 120 (553)
|...++.||.|++||++++.||++|++|+. ++.|+.|.+|.+++++||+++|.+|++|++++|+|||+++||..+.
T Consensus 2 ~g~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~ 77 (102)
T 2pbc_A 2 SPIKSRKGDVLHMHYTGKLEDGTEFDSSLP----QNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA 77 (102)
T ss_dssp CCCCCCTTCEEEEEEEEECTTSCEEEESTT----TTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCB
T ss_pred CCCcCCCCCEEEEEEEEEECCCCEEEeCCC----CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC
Confidence 333489999999999999889999999986 5789999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCeEEEEEEEEeeecc
Q 008788 121 PVAAPSTFPKDEELHFEIEMIDFAKA 146 (553)
Q Consensus 121 ~~~~~~~i~~~~~l~~~v~l~~~~~~ 146 (553)
+ +.||++++++|+|+|+++...
T Consensus 78 ~----~~Ip~~~~l~f~v~l~~v~~~ 99 (102)
T 2pbc_A 78 P----PKIPGGATLVFEVELLKIERR 99 (102)
T ss_dssp T----TTBCTTCCEEEEEEEEEEGGG
T ss_pred C----CCcCcCCeEEEEEEEEEeccc
Confidence 5 679999999999999999754
No 45
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=167.03 Aligned_cols=116 Identities=30% Similarity=0.479 Sum_probs=98.7
Q ss_pred eeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHh
Q 008788 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR 338 (553)
Q Consensus 259 ~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~ 338 (553)
++.|++.+++|+++++++|.|..+ ..|+.|+|||++++.+ +|++|+++ .. +++|+.|.+|.+.+++||+.+|.
T Consensus 18 ~~~~v~~~~gl~~~vl~~G~g~~~----~~gd~V~v~Y~g~l~~-~G~~fdss-~~-~~~p~~f~lG~g~~i~G~e~aL~ 90 (134)
T 3b7x_A 18 RMLDISGDRGVLKDVIREGAGDLV----APDASVLVKYSGYLEH-MDRPFDSN-YF-RKTPRLMKLGEDITLWGMELGLL 90 (134)
T ss_dssp TCEESSSSSSEEEEEEECCEEEEC----CTTCEEEEEEEEECTT-CSSCSEEC---------CEEC-CCCCCHHHHHHHH
T ss_pred ccceeeCCCCEEEEEEEcCCCCCC----CCCCEEEEEEEEEECC-CCeEEEec-CC-CCCCEEEEcCCcchhHHHHHHHh
Confidence 357899999999999999999865 5799999999999874 48888544 33 36899999999999999999999
Q ss_pred cCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeee
Q 008788 339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (553)
Q Consensus 339 ~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~ 381 (553)
+|++||++.|.|||+++||..+.++.||++++++|+|+|+++.
T Consensus 91 gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 91 SMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp TCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence 9999999999999999999999888899999999999999875
No 46
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=99.83 E-value=3.8e-20 Score=172.87 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=97.5
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (553)
Q Consensus 150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~ 229 (553)
..++|+.++++++|+| ..|+.||.|+|||++++.||++|+|+ +.|++|.+| ++++||+++|.+|++|++++|+||
T Consensus 114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss--~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IP 188 (219)
T 3oe2_A 114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS--TQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIP 188 (219)
T ss_dssp ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC--SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc--CCcEEEEec--chhHHHHHHHhCCCCCCEEEEEEC
Confidence 3567999999999999 78999999999999999999999998 899999998 899999999999999999999999
Q ss_pred CCccCCCCCCC-CCCCCceEEEEEEEeeee
Q 008788 230 SQYLTPSPLMP-VVEGCEEVHFEVELVHLI 258 (553)
Q Consensus 230 ~~~~~g~~~~~-~i~~~~~l~~~v~l~~~~ 258 (553)
|+++||..+.+ .||||++|+|+|+|+++.
T Consensus 189 p~lAYG~~g~~~~IPpnstLvFeVeLl~Ik 218 (219)
T 3oe2_A 189 SDQAYGAEGAGDLIDPFTPLVFEIELIAVS 218 (219)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred chhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence 99999997655 599999999999999985
No 47
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.82 E-value=6.4e-20 Score=159.01 Aligned_cols=107 Identities=33% Similarity=0.464 Sum_probs=96.7
Q ss_pred CCCCeEEE--EEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEE
Q 008788 151 DDFGVVKK--VINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY 227 (553)
Q Consensus 151 ~d~g~~~~--i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~ 227 (553)
.++|+.+. ++++|.|...|+.||.|+|||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||++.|.
T Consensus 20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ 99 (130)
T 2lgo_A 20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99 (130)
T ss_dssp SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence 45677666 999999954499999999999999999999999864 589999999999999999999999999999999
Q ss_pred EeCCccCCCCC-CCCCCCCceEEEEEEEeee
Q 008788 228 VTSQYLTPSPL-MPVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 228 v~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~ 257 (553)
|||+++||+.+ ++.||++++|+|+|+|+++
T Consensus 100 ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 100 IPYQLAYGERGYPPVIPPKATLVFEVELLAV 130 (130)
T ss_dssp ECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred ECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence 99999999864 4569999999999999875
No 48
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.82 E-value=1.6e-19 Score=154.27 Aligned_cols=113 Identities=27% Similarity=0.373 Sum_probs=101.2
Q ss_pred eeeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHh
Q 008788 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR 338 (553)
Q Consensus 259 ~~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~ 338 (553)
.+.+++.+|.+.++++++|.|.. ..|..|+.|+|||++++.+ |++|++ ++|+.|.+|.+.+++||+.+|.
T Consensus 5 ~~~~~~~~g~~~~~vl~~G~G~~--~~~~~gd~V~v~y~g~~~d--G~~~ds------~~p~~f~lG~~~~i~g~e~~l~ 74 (118)
T 2awg_A 5 EWLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVP 74 (118)
T ss_dssp CEEESSSSSSEEEEEEECCCTTC--CCCCTTSEEEEEEEEECTT--SCEEEE------EEEEEEETTSSCSCHHHHHHGG
T ss_pred cceEECCCCCEEEEEEEcCCCCC--ccCCCCCEEEEEEEEEECC--CCEEEC------CCCEEEEECCCChhHHHHHHHh
Confidence 35789999999999999999972 1247899999999999855 898843 2689999999999999999999
Q ss_pred cCCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeee
Q 008788 339 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (553)
Q Consensus 339 ~M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~ 381 (553)
+|++||++.|.|||+++||..+.++.||++++++|+|+|+++.
T Consensus 75 gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 75 LMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp GSCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence 9999999999999999999999888899999999999999875
No 49
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.82 E-value=1.7e-19 Score=156.65 Aligned_cols=117 Identities=32% Similarity=0.530 Sum_probs=101.0
Q ss_pred eeccCCCceEEEEEecC-CCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhc
Q 008788 261 RDMLGDGRLIKRRIRDG-KGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339 (553)
Q Consensus 261 ~d~~~dg~l~k~il~~G-~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~ 339 (553)
.+++.+|.++|+++++| .|.- ..|..|+.|+|||+++++. +|++|+++. . +++|++|.+|.+.+++||+.+|.+
T Consensus 10 ~~~~~~g~~~~~il~~G~~g~g--~~~~~gd~V~v~Y~g~~~~-dG~~fd~s~-~-~~~p~~f~lG~g~~i~g~e~~l~g 84 (129)
T 2vn1_A 10 VELTADGGVIKTILKKGDEGEE--NIPKKGNEVTVHYVGKLES-TGKVFDSSF-D-RNVPFKFHLEQGEVIKGWDICVSS 84 (129)
T ss_dssp EECSTTSSEEEEEEECCCCSGG--GSCCTTCEEEEEEEEEETT-TCCEEEEGG-G-TTCCEEEETTSSSSCHHHHHHHTT
T ss_pred cEECCCCCEEEEEEeCCCCCCC--CcCCCCCEEEEEEEEEECC-CCeEEEecC-C-CCccEEEEeCCCCcCHHHHHHHhC
Confidence 46788999999999977 5531 1247899999999999832 389985554 2 368999999999999999999999
Q ss_pred CCCCcEEEEEeCCCCcccCCCCCCCCCCCCeEEEEEEEeeeec
Q 008788 340 MLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382 (553)
Q Consensus 340 M~~GE~~~~~~~~~~~yg~~g~~~~ip~~~~l~~~ieL~~~~~ 382 (553)
|++||++.|.|||+++||..+.++.||++++++|+|+|+++..
T Consensus 85 m~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 85 MRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp CCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred CCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence 9999999999999999999998888999999999999999875
No 50
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.81 E-value=2.3e-19 Score=168.14 Aligned_cols=108 Identities=23% Similarity=0.321 Sum_probs=100.0
Q ss_pred ccCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEE
Q 008788 149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY 227 (553)
Q Consensus 149 ~~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~ 227 (553)
...++|+.+.++.+|+| ..|+.||.|+|||++++.||++|+++. .+.|+.|.+|.+++++||+++|.+|++||+++|+
T Consensus 100 ~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~ 178 (209)
T 3uf8_A 100 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT 178 (209)
T ss_dssp EECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEE
T ss_pred cCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEE
Confidence 44678999999999999 679999999999999999999999986 4789999999999999999999999999999999
Q ss_pred EeCCccCCCCCC-CCCCCCceEEEEEEEeee
Q 008788 228 VTSQYLTPSPLM-PVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 228 v~~~~~~g~~~~-~~i~~~~~l~~~v~l~~~ 257 (553)
|||+++||+.+. +.||+|++|+|+|+|+++
T Consensus 179 Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 179 IPPQLGYGARGAAGVIPPNATLVFEVELLDV 209 (209)
T ss_dssp ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred ECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence 999999999654 459999999999999875
No 51
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=160.17 Aligned_cols=115 Identities=27% Similarity=0.360 Sum_probs=102.3
Q ss_pred eeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhc
Q 008788 260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339 (553)
Q Consensus 260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~ 339 (553)
+.|++.+|.+.++++++|+|.. ..|..|+.|+|||++++.| |++|++ ++|++|.+|.+.+++||+.+|.+
T Consensus 36 ~~~~~~sG~v~~~vl~~G~G~~--~~p~~gd~V~v~Y~g~l~d--G~~fds------~~p~~f~lG~g~vi~G~eeaL~g 105 (157)
T 2jwx_A 36 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVPL 105 (157)
T ss_dssp CEESSSSSSEEEEEEECCSTTS--CCCCTTEEEEEEEEEECTT--SCEEEE------EEEEEEETTTTSSCHHHHHHTTT
T ss_pred cceECCCCCEEEEEEEccCCCc--cCCCCCCEEEEEEEEEECC--CCEeec------CCCEEEEeCCCChhHHHHHHHcC
Confidence 4578899999999999999962 1247899999999999865 999854 26899999999999999999999
Q ss_pred CCCCcEEEEEeCCCCcccCCC-CCCCCCCCCeEEEEEEEeeeecCC
Q 008788 340 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPK 384 (553)
Q Consensus 340 M~~GE~~~~~~~~~~~yg~~g-~~~~ip~~~~l~~~ieL~~~~~~~ 384 (553)
|++||++.|.||++++||..+ .++.||++++++|+|+|+++....
T Consensus 106 Mk~Ge~~~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~~ 151 (157)
T 2jwx_A 106 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLE 151 (157)
T ss_dssp SCTTCEEEEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEECS
T ss_pred CCCCCEEEEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEccc
Confidence 999999999999999999999 677899999999999999998754
No 52
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.81 E-value=8.1e-20 Score=158.47 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=98.9
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhcc------CCcCc
Q 008788 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGT------MTREE 222 (553)
Q Consensus 150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~------mk~Ge 222 (553)
..++++.+.++++|.| ..++.||.|+|||++++.+|++|+++.. ++|+.|.+|.+++++||+++|.+ |++||
T Consensus 9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge 87 (129)
T 1u79_A 9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG 87 (129)
T ss_dssp ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence 3567999999999999 7899999999999999999999999864 68999999999999999999998 99999
Q ss_pred EEEEEEeCCccCCCCCC------CCCCCCceEEEEEEEeee
Q 008788 223 KAVIYVTSQYLTPSPLM------PVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 223 ~~~~~v~~~~~~g~~~~------~~i~~~~~l~~~v~l~~~ 257 (553)
+++|.|||+++||+... +.||+|++|+|+|+|+++
T Consensus 88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 99999999999998653 579999999999999986
No 53
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=158.61 Aligned_cols=122 Identities=26% Similarity=0.324 Sum_probs=107.4
Q ss_pred eeeccCCCceEEEEEecCCCCCCCCCCCCCCEEEEEEEEEEecCCCcEEEeccCCCCCCCeEEEeCCCCchhHHHHHHhc
Q 008788 260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339 (553)
Q Consensus 260 ~~d~~~dg~l~k~il~~G~g~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~~s~~~~~~~~~~f~lG~~~v~~g~e~~l~~ 339 (553)
+.+++.+|.+.++++++|.|.. ..|..|+.|+|||++++.| |++|++ ++|+.|.+|.+.+++||+.+|.+
T Consensus 10 ~~~~~~~g~l~~~vl~~G~G~~--~~~~~gd~V~v~Y~g~~~d--G~~fds------~~p~~f~lG~g~~i~G~e~~L~g 79 (135)
T 2d9f_A 10 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQE------EPELVFTLGDCDVIQALDLSVPL 79 (135)
T ss_dssp CEESSSSSSSEEEEEECCCSSC--CCCCTTSEEEEEEEEEESS--SCEEEE------EEEEEEETTSCCSCTTTTTTGGG
T ss_pred CcEECCCCCEEEEEEEcCCCCC--ccCCCCCEEEEEEEEEECC--CCEEec------CCCEEEEeCCCChhHHHHHHHhC
Confidence 5688999999999999999962 1247899999999999865 898853 36899999999999999999999
Q ss_pred CCCCcEEEEEeCCCCcccCCC-CCCCCCCCCeEEEEEEEeeeecCCCCCCCCh
Q 008788 340 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPKDWTGLSF 391 (553)
Q Consensus 340 M~~GE~~~~~~~~~~~yg~~g-~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~ 391 (553)
|++||++.|.||++++||..+ .++.||++++++|+|+|+++....+...++.
T Consensus 80 m~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e~~s~ 132 (135)
T 2d9f_A 80 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSGP 132 (135)
T ss_dssp SCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred CCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence 999999999999999999998 6778999999999999999998776665553
No 54
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.80 E-value=1.9e-19 Score=162.05 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=98.1
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (553)
Q Consensus 150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v 228 (553)
..++|+.+.++++|.|...|+.||.|+|||++++.||++|+++. ++.|+.|.+ +++++||+++|.+|++|++++|+|
T Consensus 34 ~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~I 111 (167)
T 1jvw_A 34 KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRLFI 111 (167)
T ss_dssp ECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred ECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEEE
Confidence 45689999999999994339999999999999999999999986 468999999 499999999999999999999999
Q ss_pred eCCccCCCCC-CCCCCCCceEEEEEEEeeeee
Q 008788 229 TSQYLTPSPL-MPVVEGCEEVHFEVELVHLIQ 259 (553)
Q Consensus 229 ~~~~~~g~~~-~~~i~~~~~l~~~v~l~~~~~ 259 (553)
||+++||..+ ++.||||++|+|+|+|+++..
T Consensus 112 p~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~ 143 (167)
T 1jvw_A 112 PYDLAYGVTGGGGMIPPYSPLEFDVELISIKD 143 (167)
T ss_dssp CGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred CchhhCCCCCCCCCcCCCCeEEEEEEEEEEEc
Confidence 9999999865 457999999999999999964
No 55
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=1.8e-18 Score=149.72 Aligned_cols=115 Identities=28% Similarity=0.543 Sum_probs=107.3
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
.+.++.++++|+.+|+.|+|++|+..|++|++ .+|.+ ..+|+|+|.|+++++++++|+.+|++|+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 35688999999999999999999999999999 67877 6799999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+++|+++++|+++|.++..+|+|++|+.+|++|++++|+| .+++..|..|
T Consensus 75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~a~~~l~~~ 124 (126)
T 4gco_A 75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN-EEAREGVRNC 124 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 5677777665
No 56
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=99.79 E-value=6.4e-19 Score=164.78 Aligned_cols=107 Identities=24% Similarity=0.287 Sum_probs=98.5
Q ss_pred cCCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEE
Q 008788 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (553)
Q Consensus 150 ~~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v 228 (553)
..++|+.+.++++|+| ..|+.||.|+|||++++.||++|+++. ++.|+.|.+ +++++||+++|.+|++|++++|+|
T Consensus 103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I 179 (213)
T 1fd9_A 103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV 179 (213)
T ss_dssp ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence 3568999999999999 889999999999999999999999986 478999999 489999999999999999999999
Q ss_pred eCCccCCCCCC-CCCCCCceEEEEEEEeeeee
Q 008788 229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLIQ 259 (553)
Q Consensus 229 ~~~~~~g~~~~-~~i~~~~~l~~~v~l~~~~~ 259 (553)
||+++||+.+. +.|||+++|+|+|+|+++.+
T Consensus 180 P~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~ 211 (213)
T 1fd9_A 180 PSGLAYGPRSVGGPIGPNETLIFKIHLISVKK 211 (213)
T ss_dssp CGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred CchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence 99999998654 67999999999999999863
No 57
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=99.79 E-value=8e-19 Score=165.26 Aligned_cols=104 Identities=23% Similarity=0.363 Sum_probs=97.1
Q ss_pred CCCCeEEEEEecCCCcCCCCCCceEEEEEEEEeCCCcEEeecC-CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe
Q 008788 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (553)
Q Consensus 151 ~d~g~~~~i~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~ 229 (553)
.++++.+.++++|.| ..|+.||.|+|||++++.||++|+|+. ++.|+.|.+ ++++|||+++|.+|++|++++|+||
T Consensus 119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP 195 (224)
T 1q6h_A 119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP 195 (224)
T ss_dssp CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence 467999999999999 789999999999999999999999986 478999999 4999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCceEEEEEEEeee
Q 008788 230 SQYLTPSPLMPVVEGCEEVHFEVELVHL 257 (553)
Q Consensus 230 ~~~~~g~~~~~~i~~~~~l~~~v~l~~~ 257 (553)
|+++||..+.+.||+|++|+|+|+|+++
T Consensus 196 ~~laYG~~g~~~IPp~stLiF~VeL~~i 223 (224)
T 1q6h_A 196 PELAYGKAGVPGIPPNSTLVFDVELLDV 223 (224)
T ss_dssp GGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred chhhcCcCCCCCCCCCCEEEEEEEEEEe
Confidence 9999999766569999999999999987
No 58
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.79 E-value=4.1e-19 Score=157.97 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-KVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (553)
Q Consensus 393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (553)
.....+..+++.|+.+|+.|+|++|+..|++||++ +|.+.+.. .........+|+|+|.|+.++|+|++|+.+|+
T Consensus 6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34568899999999999999999999999999994 44321100 00111234599999999999999999999999
Q ss_pred HHHhh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008788 472 KVLDA-------NPAHVKGL----YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRL 536 (553)
Q Consensus 472 ~al~~-------dp~n~ka~----~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~ 536 (553)
+||++ +|++.++| |++|.++..+|+|++|+.+|++|++++|++. .+.+++..+++.+++..++.
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~-~~~~~~~~~~~~~~~~~~k~ 156 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK-GETPGKERMMEVAIDRIAQL 156 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC-SCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHh
Confidence 99999 99999999 9999999999999999999999999999874 57888888888888776654
No 59
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.78 E-value=8e-19 Score=145.86 Aligned_cols=94 Identities=24% Similarity=0.326 Sum_probs=87.0
Q ss_pred CCCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCC-CCCCCC
Q 008788 167 ETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPL-MPVVEG 244 (553)
Q Consensus 167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~-~~~i~~ 244 (553)
..++.||.|++||++++.||++|+++.. ++|+.|.+|.+++++||+++|.+|++||+++|+|||+++||+.. ++.||+
T Consensus 4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~ 83 (102)
T 2pbc_A 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG 83 (102)
T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence 6789999999999999889999999864 68999999999999999999999999999999999999999864 457999
Q ss_pred CceEEEEEEEeeeeee
Q 008788 245 CEEVHFEVELVHLIQV 260 (553)
Q Consensus 245 ~~~l~~~v~l~~~~~~ 260 (553)
+++++|+|+|+++.+.
T Consensus 84 ~~~l~f~v~l~~v~~~ 99 (102)
T 2pbc_A 84 GATLVFEVELLKIERR 99 (102)
T ss_dssp TCCEEEEEEEEEEGGG
T ss_pred CCeEEEEEEEEEeccc
Confidence 9999999999999754
No 60
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.77 E-value=7.3e-18 Score=157.33 Aligned_cols=169 Identities=21% Similarity=0.245 Sum_probs=131.5
Q ss_pred EEEeeeecCCCCCCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChh-----HHHHHhhhhhHH
Q 008788 375 IELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----EGKVFVGKRNLL 449 (553)
Q Consensus 375 ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~e-----e~~~~~~~~~~~ 449 (553)
..+..++...+.|.++.+++...+..++..|+.++..|+|.+|+..|++|++. .|.+.+ .......+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHHH
Confidence 34556777888889999999999999999999999999999999999999994 333320 111123334579
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
++|+|.|++++++|++|+.+|+++++++|.+.++++++|.++..+|+|++|+..|+++++++|++ ..+...+..+...+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 56899999999999
Q ss_pred HHHHHHHHHHHHhhccccc
Q 008788 530 RKLKVRLENSLKGCLTRSL 548 (553)
Q Consensus 530 ~~~~~~~~~~~~~mf~~~~ 548 (553)
.+..+.++..|++||+...
T Consensus 170 ~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHC--------------
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 9999999999999998753
No 61
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.75 E-value=1.4e-17 Score=171.44 Aligned_cols=155 Identities=26% Similarity=0.451 Sum_probs=132.7
Q ss_pred ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008788 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468 (553)
Q Consensus 390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~ 468 (553)
+.++.+..+..++..|+.+++.|+|++|+..|++|++++.... ..+.++..........+|+|+|.||+++++|++|+.
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 5788889999999999999999999999999999999654421 011222233455567899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT 545 (553)
Q Consensus 469 ~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (553)
+|++||+++|+++++||++|.+|..+++|++|+.+|++|++++|++ ..++..+..+...+.+.++++++.|++||+
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~ 370 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999997 569999999999999999999999999995
No 62
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=2.2e-16 Score=136.61 Aligned_cols=115 Identities=21% Similarity=0.354 Sum_probs=102.7
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
..+.|..+++.|+.+|+.|+|++|+..|++||+ ++|.+ ..+|+|+|.||+++++|++|+.+|+++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~-----------~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN-----------ITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 356788999999999999999999999999999 67876 678999999999999999999999999
Q ss_pred HhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 474 LDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 474 l~~dp~n-------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
|+++|++ .++|+++|.++..+++|++|++.|+++++++|+ ++..+.|..+
T Consensus 69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~l 125 (127)
T 4gcn_A 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD--PELVKKVKEL 125 (127)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC--HHHHHHHHHH
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--HHHHHHHHHh
Confidence 9999876 468999999999999999999999999999997 3455555544
No 63
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.69 E-value=6.5e-16 Score=138.45 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCC
Q 008788 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (553)
Q Consensus 44 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~ 123 (553)
.+++||.|++||++++.||++|+||+. ++.|+.|.+|.+++++||+++|.+|++|++++|.|||++|||..
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~----~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~----- 94 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRN----NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP----- 94 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC-----
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----
Confidence 478999999999999999999999987 56899999999999999999999999999999999999999975
Q ss_pred CCCCCCCCCeEEEEEEEEee
Q 008788 124 APSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 124 ~~~~i~~~~~l~~~v~l~~~ 143 (553)
+..+++.|....+
T Consensus 95 -------~~~lv~~vp~~~f 107 (169)
T 4dt4_A 95 -------SPDLIQYFSRREF 107 (169)
T ss_dssp -------CGGGEEEEEGGGG
T ss_pred -------ChHHEEEeCHHHC
Confidence 4567777765555
No 64
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.1e-15 Score=131.13 Aligned_cols=117 Identities=26% Similarity=0.415 Sum_probs=107.4
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|+.+++.|+|++|+..|++|++ ..|.+ ..+++|+|.|++++++|++|+.++++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 477889999999999999999999999999 67766 679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSKLKKQR 529 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~------P~~~~~~~~~l~~l~~~~ 529 (553)
+|+++.+|+++|.++..+|++++|+.+|+++++++ |++ ..+...+..+..++
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~-~~~~~~l~~~~~~l 125 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYKASQQR 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH-HHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 875 56777777776543
No 65
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.63 E-value=1e-14 Score=129.25 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=73.4
Q ss_pred CCCCCCEEEEEEEEEec-CCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCC
Q 008788 44 TPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV 122 (553)
Q Consensus 44 ~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~ 122 (553)
.++.||.|++||++++. ||++|+||+. ..|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||..+
T Consensus 6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~-----~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~--- 77 (151)
T 2kr7_A 6 LESIKQAALIEYEVREQGSSIVLDSNIS-----KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE--- 77 (151)
T ss_dssp CTTSCCEEEEEEEEEESSCSCEEEESTT-----TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC---
T ss_pred CCCCCCEEEEEEEEEECCCCCEEEeCCC-----CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC---
Confidence 37899999999999987 9999999984 57999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCCCeEEEEEEEEee
Q 008788 123 AAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 123 ~~~~~i~~~~~l~~~v~l~~~ 143 (553)
..+++.|....+
T Consensus 78 ---------~~~v~~v~~~~f 89 (151)
T 2kr7_A 78 ---------SSYLQEVPRDQF 89 (151)
T ss_dssp ---------SCEEEEEEGGGG
T ss_pred ---------cceEEEEcHHHc
Confidence 556776655554
No 66
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.62 E-value=3e-15 Score=132.85 Aligned_cols=86 Identities=26% Similarity=0.334 Sum_probs=72.3
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccc-------C--CCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCcc
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y--GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY 115 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~-------~--~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~ 115 (553)
+++||.|++||++++ ||++|+||+.. + +..+.|+.|.+|.+++++||+++|.+|++|++++|+|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 588999999999999 99999999851 0 1113799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 116 GEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 116 g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
|..+ ..++..|....+
T Consensus 81 G~~~------------~~~V~~v~~~~f 96 (157)
T 3pr9_A 81 GKRD------------PSKIKLIPLSEF 96 (157)
T ss_dssp CCCC------------GGGEEEEEHHHH
T ss_pred CCCC------------hHhEEEcCHHHC
Confidence 9764 556666655444
No 67
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=8.7e-15 Score=130.63 Aligned_cols=104 Identities=12% Similarity=0.156 Sum_probs=99.2
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..+++.|+|++|+..|++++. .+|.+ ..+|+|+|.|+..+++|++|+..|.+|++
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~-----------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYN-----------VDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 4577889999999999999999999999999 78877 67999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
++|+++.+||++|.||..+|++++|+..|++|+++.|++
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999984
No 68
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.61 E-value=9.1e-15 Score=131.80 Aligned_cols=125 Identities=18% Similarity=0.304 Sum_probs=110.6
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...+..+...|+.+++.|+|++|+..|++|++ ..|.+ ..+++++|.||+++++|++|+.++++++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al 72 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAAAYSASGQHEKAAEDAELAT 72 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35688899999999999999999999999999 67766 6789999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHHHHH
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP-DATAALSKLKKQRRKLKV 534 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~-~~~~~l~~l~~~~~~~~~ 534 (553)
+++|+++.+|+++|.++..+|+|++|+.+|+++++++|++.. .+...+..+++++.+..+
T Consensus 73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998742 255666666666655443
No 69
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.61 E-value=6e-16 Score=130.13 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=73.9
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEc-CCCccCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK-PQMHYGEDDCPVA 123 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip-~~~a~g~~~~~~~ 123 (553)
++.||.|+++|++++ ||++|++++ +.|+.|.+|.+++++||+++|.+|++|++++|.|| |+. ||..+.
T Consensus 30 ~~~gD~V~v~Y~g~~-dG~~fdss~------~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~--- 98 (113)
T 1hxv_A 30 LANGDIAIIDFTGIV-DNKKLASAS------AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL--- 98 (113)
T ss_dssp CCSSEEEEEEEEEEE-TTEECSTTC------CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG---
T ss_pred CCCCCEEEEEEEEEE-CCEEcccCC------ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC---
Confidence 899999999999998 999999885 47999999999999999999999999999999997 443 997654
Q ss_pred CCCCCCCCCeEEEEEEEEee
Q 008788 124 APSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 124 ~~~~i~~~~~l~~~v~l~~~ 143 (553)
++++++|+|+|+++
T Consensus 99 ------~g~~l~F~V~l~~V 112 (113)
T 1hxv_A 99 ------QSKPVTFEVVLKAI 112 (113)
T ss_dssp ------GSCCCEEEEEECCB
T ss_pred ------CCCEEEEEEEEEEE
Confidence 37999999999886
No 70
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.60 E-value=6.4e-15 Score=135.42 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=72.3
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
+++||.|+|+|++++.||++|+||+. ..|+.|.+|.++++|||+++|.+|++|++++|+|||++|||.++
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~----- 72 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD----- 72 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT-----TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC-----
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC-----CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC-----
Confidence 68999999999999889999999985 47999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCeEEEEEEEEee
Q 008788 125 PSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~ 143 (553)
..+++.|.+..|
T Consensus 73 -------~~lV~~vp~~~f 84 (196)
T 2kfw_A 73 -------ENLVQRVPKDVF 84 (196)
T ss_dssp -------TTTCEEECGGGC
T ss_pred -------hhhEEEEEHHHC
Confidence 445666655444
No 71
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.59 E-value=1e-14 Score=131.44 Aligned_cols=71 Identities=17% Similarity=0.104 Sum_probs=67.0
Q ss_pred CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCC
Q 008788 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM 239 (553)
Q Consensus 169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~ 239 (553)
++.||.|+++|++++.+|++|+|+..++|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||.+.+
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~ 73 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE 73 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence 67899999999999889999999987799999999999999999999999999999999999999998643
No 72
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=99.58 E-value=1.2e-15 Score=135.24 Aligned_cols=87 Identities=21% Similarity=0.349 Sum_probs=73.1
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccc-------C-C-CCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCcc
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y-G-GKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY 115 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~-------~-~-~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~ 115 (553)
+++||.|++||++++.||++|+||+.+ + . ....|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus 2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY 81 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81 (151)
T ss_dssp CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence 689999999999998899999999620 0 0 023699999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 008788 116 GEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 116 g~~~~~~~~~~~i~~~~~l~~~v~l~~~ 143 (553)
|..+ ..+++.|.+..+
T Consensus 82 G~~~------------~~~v~~v~~~~f 97 (151)
T 1ix5_A 82 GNRN------------EMLIQKIPRDAF 97 (151)
T ss_dssp CSCC------------STTBCCEETHHH
T ss_pred CCCC------------ccEEEEEEHHHc
Confidence 9764 455666666655
No 73
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.57 E-value=3e-15 Score=125.85 Aligned_cols=84 Identities=21% Similarity=0.196 Sum_probs=74.4
Q ss_pred CCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEe-CCccCCCCCCCCCCCC
Q 008788 167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT-SQYLTPSPLMPVVEGC 245 (553)
Q Consensus 167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~-~~~~~g~~~~~~i~~~ 245 (553)
..++.||.|+++|++++ ||++|+++. ++|+.|.+|.++++|||+++|.+|++||++.|.|| |+. ||... .++
T Consensus 28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~-~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~----~~g 100 (113)
T 1hxv_A 28 KKLANGDIAIIDFTGIV-DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKE----LQS 100 (113)
T ss_dssp -CCCSSEEEEEEEEEEE-TTEECSTTC-CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSG----GGS
T ss_pred CCCCCCCEEEEEEEEEE-CCEEcccCC-ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCC----CCC
Confidence 56889999999999998 999999885 78999999999999999999999999999999996 544 88653 256
Q ss_pred ceEEEEEEEeee
Q 008788 246 EEVHFEVELVHL 257 (553)
Q Consensus 246 ~~l~~~v~l~~~ 257 (553)
++++|+|+|+++
T Consensus 101 ~~l~F~V~l~~V 112 (113)
T 1hxv_A 101 KPVTFEVVLKAI 112 (113)
T ss_dssp CCCEEEEEECCB
T ss_pred CEEEEEEEEEEE
Confidence 999999999886
No 74
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.57 E-value=1.7e-14 Score=130.03 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~ 119 (553)
+++||.|+++|++++.||++|+||+. ..|+.|.+|.++++|||+++|.+|++|++++|.|||+.|||..+
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~ 72 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCS-----SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccC-----CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence 68899999999999889999999984 47999999999999999999999999999999999999999874
No 75
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=6.1e-14 Score=123.32 Aligned_cols=122 Identities=14% Similarity=0.221 Sum_probs=106.4
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..+++.|+|.+|+..|++++. .+|.+ ..+++++|.|+.++++|++|+..+.+++.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYD-----------ARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3566788899999999999999999999999 67876 67899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK 533 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (553)
++|+++.+++.+|.++..+|++++|+..|+++++++|++. .......++...+...+
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP-AHEALAARAGAMLEAVT 137 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999863 34444555555444433
No 76
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.55 E-value=5.8e-14 Score=124.73 Aligned_cols=117 Identities=13% Similarity=0.203 Sum_probs=102.8
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|+|.+|+..|++++. .+|.+ ..+++++|.|+..+++|++|+..|++++.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYD-----------SRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3566788899999999999999999999999 67877 67899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
++|+++.+++.+|.++..+|++++|+..|+++++++|++. .......++...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~ 135 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP-EFXELSTRVSSM 135 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC-cchHHHHHHHHH
Confidence 9999999999999999999999999999999999999863 333333333333
No 77
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.54 E-value=1.4e-14 Score=136.15 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEecCCcEEEecccc-------C--CCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCcc
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y--GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY 115 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~-------~--~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~ 115 (553)
+++||.|++||++++ ||++|+||+.. + +..+.|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY 80 (231)
T 3prb_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (231)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence 578999999999999 99999999851 0 1123799999999999999999999999999999999999999
Q ss_pred CCCC
Q 008788 116 GEDD 119 (553)
Q Consensus 116 g~~~ 119 (553)
|.++
T Consensus 81 Ge~~ 84 (231)
T 3prb_A 81 GKRD 84 (231)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9875
No 78
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=5.7e-14 Score=121.76 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=107.6
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|+|++|+..|++|+. ..|.+ ..+++++|.|++.+++|++|+.++.++++++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 66788999999999999999999999999 66665 5789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-----SEPDATAALSKLKKQRRKLK 533 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~-----~~~~~~~~l~~l~~~~~~~~ 533 (553)
|+++.+++.+|.++..+|++++|+..|+++++++|+ + ..+...+..+..+.....
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~ 133 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALRIAKKKRWNSI 133 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 4 457777777766655443
No 79
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.52 E-value=3.3e-14 Score=133.64 Aligned_cols=69 Identities=22% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCCCceEEEEEEEEeCCCcEEeecCC--------------CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccC
Q 008788 169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT 234 (553)
Q Consensus 169 ~~~gd~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~ 234 (553)
++.||.|++||++++ ||++|+||.. ++|+.|.+|.++++|||+++|.+|++|++++++|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY 80 (231)
T 3prb_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (231)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence 578999999999999 9999999864 3899999999999999999999999999999999999999
Q ss_pred CCCC
Q 008788 235 PSPL 238 (553)
Q Consensus 235 g~~~ 238 (553)
|.++
T Consensus 81 Ge~~ 84 (231)
T 3prb_A 81 GKRD 84 (231)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9753
No 80
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.52 E-value=4.7e-13 Score=118.52 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=75.1
Q ss_pred CCCCCCceEEEEEEEEeC-CCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCC
Q 008788 167 ETPRAPYEVKAWISAKTG-DGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGC 245 (553)
Q Consensus 167 ~~~~~gd~V~v~y~~~~~-~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~ 245 (553)
+.++.||.|++||++++. +|++|+|+..++|+.|.+|.++++|||+++|.+|++|+++.|.|||+.+||.++
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------- 77 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------- 77 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC-------
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC-------
Confidence 568899999999999987 999999998789999999999999999999999999999999999999999764
Q ss_pred ceEEEEEEEeee
Q 008788 246 EEVHFEVELVHL 257 (553)
Q Consensus 246 ~~l~~~v~l~~~ 257 (553)
..+++.+....|
T Consensus 78 ~~~v~~v~~~~f 89 (151)
T 2kr7_A 78 SSYLQEVPRDQF 89 (151)
T ss_dssp SCEEEEEEGGGG
T ss_pred cceEEEEcHHHc
Confidence 345666666555
No 81
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.51 E-value=3.2e-13 Score=120.20 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=69.8
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
+++||.|+++|+++ .||++|+||+ +.|.+|.+++++||+++|.+|++|++++|.|||+.|||..
T Consensus 3 i~~gd~V~v~Y~g~-~dG~~fdss~---------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~------ 66 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ-VEGEVLDQGE---------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH------ 66 (158)
T ss_dssp CCTTEEEEEEEEEE-ETTEEEEEEE---------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC------
T ss_pred CCCCCEEEEEEEEE-ECCEEEEeeE---------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC------
Confidence 67899999999999 8999999774 8899999999999999999999999999999999999975
Q ss_pred CCCCCCCCeEEEEEEEEee
Q 008788 125 PSTFPKDEELHFEIEMIDF 143 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~ 143 (553)
+..+++.|.+..+
T Consensus 67 ------~~~lv~~v~~~~f 79 (158)
T 3cgm_A 67 ------DPEGVQVVPLSAF 79 (158)
T ss_dssp ------CGGGEEEEEGGGS
T ss_pred ------CcceEEEEEHHHC
Confidence 4667888877666
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.50 E-value=1.2e-13 Score=122.98 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=98.2
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
....+...|+.+++.|+|++|+..|++|++ ++|.+ ..+|+++|.||.+++++++|+.++.+++++
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERD-----------PKAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 344566889999999999999999999999 78877 679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRD-FEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~-l~~al~l~P~~~~~~~~~l~~l 525 (553)
+|+++.+|+.+|.++..++++++|... +++|++++|+| +.+......+
T Consensus 95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~l 143 (150)
T 4ga2_A 95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQL 143 (150)
T ss_dssp CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHH
Confidence 999999999999999999999877665 69999999997 4455544433
No 83
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.49 E-value=3.9e-13 Score=120.40 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=72.9
Q ss_pred CCCCCceEEEEEEEEeCCCcEEeecCC-CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCc
Q 008788 168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE 246 (553)
Q Consensus 168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~ 246 (553)
.++.||.|++||++++.||++|+|+.. ++|+.|.+|.++++|||+++|.+|++||++.|.|||+++||+++ .
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~-------~ 96 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS-------P 96 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC-------G
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC-------h
Confidence 588999999999999999999999864 58999999999999999999999999999999999999999764 3
Q ss_pred eEEEEEEEeee
Q 008788 247 EVHFEVELVHL 257 (553)
Q Consensus 247 ~l~~~v~l~~~ 257 (553)
.++..|....|
T Consensus 97 ~lv~~vp~~~f 107 (169)
T 4dt4_A 97 DLIQYFSRREF 107 (169)
T ss_dssp GGEEEEEGGGG
T ss_pred HHEEEeCHHHC
Confidence 44555555444
No 84
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.48 E-value=3.9e-14 Score=125.69 Aligned_cols=71 Identities=21% Similarity=0.130 Sum_probs=65.5
Q ss_pred CCCCceEEEEEEEEeCCCcEEeecCC--------------CCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccC
Q 008788 169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT 234 (553)
Q Consensus 169 ~~~gd~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~ 234 (553)
++.||.|++||++++ +|++|+||.. ++|+.|.+|.++++|||+++|.+|++||+++|+|||+++|
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 578999999999999 9999999864 3899999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 008788 235 PSPLMP 240 (553)
Q Consensus 235 g~~~~~ 240 (553)
|++++.
T Consensus 81 G~~~~~ 86 (157)
T 3pr9_A 81 GKRDPS 86 (157)
T ss_dssp CCCCGG
T ss_pred CCCChH
Confidence 977543
No 85
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=1.2e-12 Score=109.22 Aligned_cols=114 Identities=26% Similarity=0.461 Sum_probs=103.0
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|.+|+..|++++. ..|.+ ..+++++|.|+..+++|++|+..+.++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999 56655 568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
+|++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHhh
Confidence 99999999999999999999999999999999999987 45666665554
No 86
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.44 E-value=6.1e-12 Score=112.12 Aligned_cols=119 Identities=27% Similarity=0.466 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (553)
.......+..+...|..++..|+|.+|+..|.++++ ..|.+ ..+++++|.|+..+++|.+|+..+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~ 70 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDA 70 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356677899999999999999999999999999999 56655 578999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 471 ~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
.++++++|.++.+++.+|.++..+|++++|+..|+++++++|++. .+...+..+
T Consensus 71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~ 124 (166)
T 1a17_A 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQEC 124 (166)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999999874 455444444
No 87
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=5.7e-13 Score=113.94 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=89.6
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|..+++.|++.+|+..|++|++ .+|.+ ..+++++|.|+..+|++.+|+..+.++++++|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45788899999999999999999999 78877 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999999999999999999985
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.43 E-value=1.9e-13 Score=121.55 Aligned_cols=110 Identities=11% Similarity=0.058 Sum_probs=92.4
Q ss_pred hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (553)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka 483 (553)
.|..+..+|++++|+..|++|+. ..|.+ ...++++|.+|+++++|++|+.+++++++++|+++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~----~~p~~-----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP----SPRQK-----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC----SHHHH-----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc----cCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 47778889999999999999887 33322 4567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 484 ~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
|+.+|.++..+|++++|+..|++|++++|++ ..+...+..+-...
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Confidence 9999999999999999999999999999997 45666666554443
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=2.5e-12 Score=120.84 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=99.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHH-----HHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----VFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~-----~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 472 (553)
+..+..+|..++..|+|++|+..|+++++ .+|.+.+-.- ........+++++|.|+.++|++++|+..+++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55677899999999999999999999999 5554411000 00011122334499999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 473 al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+++++|+++.+++.+|.++..+|++++|+.+|+++++++|++ ..+...+..+
T Consensus 80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~ 131 (208)
T 3urz_A 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLGNY 131 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 4566555544
No 90
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.42 E-value=4.7e-13 Score=123.00 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=67.8
Q ss_pred CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCC
Q 008788 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240 (553)
Q Consensus 169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~ 240 (553)
+++||.|+|+|++++.+|++|+|+..++|++|.+|.++++|||+++|.+|++|++++|+|||+.+||++.+.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~ 74 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN 74 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChh
Confidence 678999999999998899999999877999999999999999999999999999999999999999987544
No 91
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=99.41 E-value=1.8e-13 Score=121.19 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=66.7
Q ss_pred CCCCceEEEEEEEEeCCCcEEeecC--------------CCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccC
Q 008788 169 PRAPYEVKAWISAKTGDGKLILSHR--------------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT 234 (553)
Q Consensus 169 ~~~gd~V~v~y~~~~~~g~~~~s~~--------------~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~ 234 (553)
++.||.|++||++++.+|++|+||. ..+|+.|.+|.++++|||+++|.+|++|++++++|||+.+|
T Consensus 2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY 81 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81 (151)
T ss_dssp CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence 6789999999999988999999995 34799999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 008788 235 PSPLMPV 241 (553)
Q Consensus 235 g~~~~~~ 241 (553)
|++++..
T Consensus 82 G~~~~~~ 88 (151)
T 1ix5_A 82 GNRNEML 88 (151)
T ss_dssp CSCCSTT
T ss_pred CCCCccE
Confidence 9875443
No 92
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.41 E-value=9.7e-12 Score=105.55 Aligned_cols=120 Identities=26% Similarity=0.388 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (553)
Q Consensus 392 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (553)
+.....+..+...|..++..|+|.+|+..|++++. ..|.+ ..++.++|.|+..++++++|+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPAN-----------AVYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhhchHHHHHHHH
Confidence 34456788899999999999999999999999998 55655 5689999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 472 ~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
+++..+|++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~ 125 (131)
T 2vyi_A 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 445555555543
No 93
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.40 E-value=7.3e-13 Score=117.40 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=91.4
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCC
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC----------RKSIEACNKVLDANPA 479 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~----------~~A~~~~~~al~~dp~ 479 (553)
+.++|++|+..|++|++ ++|.+ ..+|+|+|.|++.++++ ++|+..|++||+++|+
T Consensus 14 r~~~feeA~~~~~~Ai~----l~P~~-----------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhHHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 44679999999999999 78887 67999999999999876 4999999999999999
Q ss_pred CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg-----------~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
+..|||.+|.||..+| +|++|+++|++|++++|++ ...++.++.+.+..
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~-~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAP 138 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHhCH
Confidence 9999999999999985 8999999999999999997 45666666554443
No 94
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.4e-12 Score=110.79 Aligned_cols=117 Identities=31% Similarity=0.491 Sum_probs=103.1
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|.+|+..|+++++ ..|.+. ....+++++|.|++.+++|++|+..|.+++++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQ--------DQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccch--------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 367788999999999999999999999998 555431 13578999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
+|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 143 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-KVFQEALRNIS 143 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 45666665553
No 95
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.40 E-value=3.1e-12 Score=109.44 Aligned_cols=114 Identities=25% Similarity=0.470 Sum_probs=102.5
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
....+...|..++..|+|++|+..|+++++ ..|.+ ..+++++|.|+..++++++|+..+.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 477788999999999999999999999998 56655 578999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~ 128 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-KEAADGYQRCM 128 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-THHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 34555555543
No 96
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.40 E-value=3.7e-12 Score=108.33 Aligned_cols=118 Identities=22% Similarity=0.377 Sum_probs=105.2
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|.+|+..|.+++. ..|.+ ..+++++|.|+..+++|++|+.++.+++.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 467788999999999999999999999999 55655 568999999999999999999999999999
Q ss_pred CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 008788 477 NPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRK 531 (553)
Q Consensus 477 dp~n-------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~ 531 (553)
+|.+ ..+++++|.++..+|++++|+..|++++++.|+ ..+...+..+...+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHH
Confidence 9877 999999999999999999999999999999994 4577777777666554
No 97
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=2.8e-12 Score=142.68 Aligned_cols=104 Identities=17% Similarity=0.269 Sum_probs=63.0
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+.+.|+.+.+.|+|++|+..|++||+ ++|.+ ..+|+|+|.+|.++|++++|+.++++||+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~-----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF-----------AAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777888888888888888888888887 56655 33455555555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
++|+++.+|+++|.++..+|++++|++.|++|++++|++
T Consensus 72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 555555555555555555555555555555555555544
No 98
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.38 E-value=3e-12 Score=126.34 Aligned_cols=102 Identities=25% Similarity=0.443 Sum_probs=96.7
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..++..|+.+++.|+|++|+..|++|+. ..|.+ ..+++|+|.||+++++|++|+.++++|++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999 67766 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
|++.++++++|.++..+|+|++|+..|+++++++|++
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999965
No 99
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.38 E-value=6.5e-12 Score=107.36 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=97.8
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+...|..++..|+|++|+..|+++++ ..|.+. ....+++++|.|++++++|++|+..+.+++..+|+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLE----LYPNGV--------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCCc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 355788899999999999999999998 566541 11368899999999999999999999999999999
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 480 H---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 480 n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
+ +.+++.+|.++..+|++++|+..|+++++..|++. .+...+..+.
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~a~~~l~ 120 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD-AARVAQERLQ 120 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH-HHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHH
Confidence 9 89999999999999999999999999999999873 4544444443
No 100
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.35 E-value=1.4e-11 Score=109.63 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=70.3
Q ss_pred CCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCceE
Q 008788 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV 248 (553)
Q Consensus 169 ~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~l 248 (553)
++.||.|++||+++ .+|++|+|+. +.|.+|.++++|||+++|.+|++||++.|.|||+.+||.+ +..+
T Consensus 3 i~~gd~V~v~Y~g~-~dG~~fdss~----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------~~~l 70 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ-VEGEVLDQGE----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------DPEG 70 (158)
T ss_dssp CCTTEEEEEEEEEE-ETTEEEEEEE----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------CGGG
T ss_pred CCCCCEEEEEEEEE-ECCEEEEeeE----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------Ccce
Confidence 67899999999999 9999999886 8999999999999999999999999999999999999976 3456
Q ss_pred EEEEEEeeee
Q 008788 249 HFEVELVHLI 258 (553)
Q Consensus 249 ~~~v~l~~~~ 258 (553)
++.|.+..|.
T Consensus 71 v~~v~~~~f~ 80 (158)
T 3cgm_A 71 VQVVPLSAFP 80 (158)
T ss_dssp EEEEEGGGSC
T ss_pred EEEEEHHHCC
Confidence 7777777763
No 101
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.32 E-value=9.7e-12 Score=132.21 Aligned_cols=116 Identities=27% Similarity=0.458 Sum_probs=105.3
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
+.+..+...|+.+++.|+|++|+..|++|++ ..|.+ ..+++|+|.||+++++|++|+.++++|++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 68 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDATRAIE 68 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4577788999999999999999999999999 67766 67999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
++|+++.+++++|.+|..+|++++|++.|++|++++|++. .+...+..+..
T Consensus 69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~ 119 (477)
T 1wao_1 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQECNK 119 (477)
T ss_dssp SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-THHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874 46666666533
No 102
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.32 E-value=1e-11 Score=117.33 Aligned_cols=100 Identities=26% Similarity=0.354 Sum_probs=54.2
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+...|..+++.|++++|+..|++|++ .+|.+ ..+++++|.++.++|++++|+..++++++++|+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 71 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALK----ENPQD-----------PEALYWLARTQLKLGLVNPALENGKTLVARTPR 71 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT----TSSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344556666666666666666666666 55554 334455555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCC
Q 008788 480 HVKGLYRRGMAYMAL-----------GEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 480 n~ka~~r~g~a~~~l-----------g~~~~A~~~l~~al~l~P~~ 514 (553)
++.+++.+|.++..+ |++++|+..|+++++++|++
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 117 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc
Confidence 555555555555555 55555555555555555543
No 103
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=2.3e-11 Score=115.24 Aligned_cols=102 Identities=15% Similarity=0.264 Sum_probs=95.2
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCC-CChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~-~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
..+...|..++..|+|++|+..|+++++ ..| .+ ..+++++|.|+..+++|++|+.++.++++++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLK----LTNNQD-----------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTTCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh----ccCCCC-----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999 555 44 4678889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
|++..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 99999999999999999999999999999999999974
No 104
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.31 E-value=1.2e-11 Score=127.59 Aligned_cols=115 Identities=8% Similarity=0.042 Sum_probs=84.7
Q ss_pred HHHHHhhhccccccCC-HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 398 AEKIRVTGNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~-~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
+..+..+|..+...|+ |++|+..|++||. ++|.+ ..+|+|+|.++.++++|.+|+.+|++||++
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----l~P~~-----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKN-----------YQVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3345556666666664 6666666666666 55555 567888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
+|+|..+|+.+|.++..+|+|++|+.+|+++++++|++. .++..+..+...
T Consensus 196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~-~a~~~lg~~l~~ 246 (382)
T 2h6f_A 196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN-SVWNQRYFVISN 246 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Confidence 888888888888888888888888888888888888863 455555554443
No 105
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=1.1e-11 Score=137.77 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=104.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+.+.|+.+++.|++++|+..|++|++ ++|.+ ..+|+|+|.++..++++++|+.++++|++++
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~-----------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTF-----------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56678999999999999999999999999 78877 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
|+++.+|+++|.+|..+|++++|++.|++|++++|++ ..+...|..+..
T Consensus 108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~ 156 (723)
T 4gyw_A 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQ 156 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHH
Confidence 9999999999999999999999999999999999997 456655555544
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=2.3e-11 Score=114.20 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=95.1
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
..|..+++.|+|++|+..|++|++ .+|.+ ..+++++|.++..+|++++|+.+++++++++|+++.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ----KAPNN-----------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 389999999999999999999999 78877 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 483 GLYRRGMAYMA-----------------------------------LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 483 a~~r~g~a~~~-----------------------------------lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
+|+.+|.+|.. +++|++|+.+|++|++++|++ .+...|.++.+
T Consensus 124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~l~~i~~ 201 (208)
T 3urz_A 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKILR 201 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH--HHHHHHHHHHH
Confidence 88888776643 456899999999999999984 46666666654
Q ss_pred HH
Q 008788 528 QR 529 (553)
Q Consensus 528 ~~ 529 (553)
..
T Consensus 202 ~~ 203 (208)
T 3urz_A 202 IE 203 (208)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 107
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.30 E-value=3.9e-12 Score=107.64 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=80.4
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~ 489 (553)
..|+|++|+..|++|++ ..+.+. ....+++++|.|+.++++|++|+..+.++++++|+++.+++.+|.
T Consensus 2 ~~g~~~~A~~~~~~al~----~~~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA----SGLQGK--------DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHS----SCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH----cCCCCc--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 35889999999999998 432111 126789999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 490 AYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 490 a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
++..+|++++|+..|+++++++|++.
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999999999999873
No 108
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=1.2e-10 Score=97.67 Aligned_cols=113 Identities=27% Similarity=0.490 Sum_probs=100.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|++++|+..|.++++ ..|.+ ..+++++|.++..++++++|+..+.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 55677889999999999999999999998 45544 5688999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 121 (125)
T 1na0_A 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 121 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 44555554443
No 109
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.28 E-value=2.4e-11 Score=125.27 Aligned_cols=118 Identities=9% Similarity=0.017 Sum_probs=106.2
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVL 474 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~al 474 (553)
..+..+...|..+.+.|++++|+..|++||. ++|.+ ..+|+++|.++..+++ +++|+.++++||
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~-----------~~a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAAN-----------YTVWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccC-----------HHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4577788899999999999999999999999 78877 6799999999999997 999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
+++|++..+|+.+|.++..+|++++|+.+|++|++++|+| ..++..+..+...+
T Consensus 160 ~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEF 213 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998 45666555554443
No 110
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.27 E-value=2.7e-11 Score=99.92 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=92.7
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+...|..++..|+|.+|+..|+++++ ..|.+ ..+++++|.++..+++|++|+..++++++++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQ----LDPEE-----------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 345788889999999999999999999 56655 568899999999999999999999999999999
Q ss_pred --CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008788 480 --HVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 480 --n~ka~~r~g~a~~~l-g~~~~A~~~l~~al~l~P~~ 514 (553)
+..+++.+|.++..+ |++++|++.|+++++..|++
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999999975
No 111
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.27 E-value=5.9e-11 Score=112.10 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=91.9
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-----------CCHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----------GECRKS 466 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-----------~~~~~A 466 (553)
+..+...|..+++.|++++|+..|++|++ .+|.+ ..+++++|.++.++ |++++|
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVA----RTPRY-----------LGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 45677889999999999999999999999 77876 56778888888888 888888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
+..++++++++|+++.+++.+|.++..+|++++|+..|++|++++ ++ ..+...+..+....
T Consensus 104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~ 164 (217)
T 2pl2_A 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSM 164 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHc
Confidence 888888888888888888888888888888888888888888888 54 45555555544433
No 112
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=2.5e-11 Score=110.80 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=66.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH-----------------------HHHHhhhhhHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------------GKVFVGKRNLLHLNVA 454 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee-----------------------~~~~~~~~~~~~~nla 454 (553)
+..+...|..+++.|++++|+..+.+++. ..|.+... ..........++.++|
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg 114 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVV----LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLG 114 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 44455666666666777777777666665 33333100 0000111134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.++.++|+|++|+..++++++++|.++.+|+.+|.+|..+|++++|+.+|++|++++|+
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 115 LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 66666666666666666666666666666666666666666666666666666666665
No 113
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.5e-10 Score=105.55 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=104.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH-----------------------HHHhhhhhHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVA 454 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~-----------------------~~~~~~~~~~~~nla 454 (553)
+..+.+.|+.+++.|+|++|+..|++|++ .+|.+.+-. .........++.++|
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK----ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 55677899999999999999999999999 677663210 011112234677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008788 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKV 534 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (553)
.++...+++..|+..+.+++.++|.+..+++.+|.++..+|+|++|++.|+++++++|++ ..+...+..+-......++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888888888889999999999999999999999999999999987 4566666666555443332
Q ss_pred HHHHHHHhhc
Q 008788 535 RLENSLKGCL 544 (553)
Q Consensus 535 ~~~~~~~~mf 544 (553)
-...|.+.+
T Consensus 160 -A~~~~~~al 168 (184)
T 3vtx_A 160 -AVKYFKKAL 168 (184)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 233444443
No 114
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.23 E-value=1.4e-10 Score=105.26 Aligned_cols=103 Identities=11% Similarity=0.191 Sum_probs=95.2
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHH-HHHcCCH--HHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC-LLKLGEC--RKSIEACNKVL 474 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~-~~kl~~~--~~A~~~~~~al 474 (553)
+..+...|..++..|+|.+|+..|.+|+. ..|.+ ..++.++|.+ ++..+++ ++|+..+.+++
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQ----LRGEN-----------AELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCSC-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45677899999999999999999999999 55655 5688999999 8899999 99999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+++|++..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999873
No 115
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.22 E-value=2.4e-11 Score=126.38 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=79.1
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
++.||.|++||+++ .||+.|++++ +.|+.|.+|.|+++|||+.+|.||++|+++.|.||+..+||..+.+
T Consensus 158 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~la--- 227 (432)
T 1w26_A 158 VEAEDRVTIDFTGS-VDGEEFEGGK------ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLK--- 227 (432)
T ss_dssp CCTTCEEEECEEEE-SSSCBCSSCC------CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTTS---
T ss_pred CCCCCEEEEEEEEe-eCCeEccCCC------ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCCC---
Confidence 79999999999999 5999999775 4689999999999999999999999999999999999999976643
Q ss_pred CCCCCCCCeEEEEEEEEeeeccc
Q 008788 125 PSTFPKDEELHFEIEMIDFAKAK 147 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~~~~~ 147 (553)
|.+++|+|+|.++....
T Consensus 228 ------g~~~~F~V~v~~v~~~~ 244 (432)
T 1w26_A 228 ------GKAAKFAINLKKVEERE 244 (432)
T ss_dssp ------SCEEEEEEECCEECCEE
T ss_pred ------CceEEEEEEEEEEeccC
Confidence 79999999999997543
No 116
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=2.3e-10 Score=108.26 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=98.5
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
..+...|..++..|+|++|+..|++|++ ..|.+ ..++.++|.|+..++++++|+..++++++++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNL-----------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcch-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 3455689999999999999999999998 66755 67899999999999999999999999999999
Q ss_pred CCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHH
Q 008788 479 AHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLK 526 (553)
Q Consensus 479 ~n~-------ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~--~~~~~~~~l~~l~ 526 (553)
++. .+|+.+|.++..+|++++|+..|++|++++|+ + ..+...+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~ 163 (228)
T 4i17_A 108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLF 163 (228)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHH
Confidence 999 77999999999999999999999999999998 5 34554444443
No 117
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.20 E-value=2.7e-10 Score=114.31 Aligned_cols=122 Identities=23% Similarity=0.415 Sum_probs=106.2
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.....|..+++.|++++|+..|++++. ..|.+.. ....++.++|.|+.+++++++|+..++++++.+|+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMK----TEPSVAE-------YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSSHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCchH-------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 345668899999999999999999999 5665421 23457889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK 533 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (553)
++.+++.+|.++..+|++++|+..|+++++++|++ ..++..+..+...+++.+
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999997 468888888877766543
No 118
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=1e-11 Score=102.94 Aligned_cols=95 Identities=29% Similarity=0.427 Sum_probs=79.1
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|++|++ ..|.+ ..+++|+|.|++++++|++|+.+|++++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356677888888889999999999999888 56655 567888999999999999999999999999
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
+|++ .++++++|.++..+|+++.|+..|++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9888 88889999998888888877766553
No 119
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.16 E-value=3.1e-10 Score=120.17 Aligned_cols=117 Identities=25% Similarity=0.386 Sum_probs=104.3
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
+.+.+..+...|+.+++.|+|.+|+..|++++. ..| + ..+++++|.|++++|+|++|+..++++
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p-~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALE----LKE-D-----------PVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCC-C-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCc-c-----------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 456789999999999999999999999999999 455 3 468999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
++++|++..+++.+|.++..+|++++|+..|+++++++|.+.......+..+.
T Consensus 66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999976554444444443
No 120
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.16 E-value=2.8e-10 Score=108.67 Aligned_cols=112 Identities=26% Similarity=0.410 Sum_probs=96.4
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|++++. ..|.+ ..+++++|.|+.+++++++|+..++++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 455677889999999999999999999998 56655 568899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSK 524 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~------P~~~~~~~~~l~~ 524 (553)
+|+++.+++.+|.++..+|++++|+..|+++++++ |++ ..+...+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~-~~~~~~l~~ 255 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYK 255 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch-HHHHHHHHH
Confidence 99999999999999999999999999999999999 775 446555544
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=2.5e-10 Score=106.50 Aligned_cols=101 Identities=9% Similarity=0.091 Sum_probs=66.8
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
..+...|..+++.|+|++|+..|++|+. ..|.+ ..+++++|.|+..+++|++|+.++++++++.|
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 3455666666666666666666666666 34443 45666777777777777777777777777666
Q ss_pred CCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 479 AHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 479 ~n~----------------ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+. .+++.+|.++..+|++++|+..|+++++++|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 555 667777777777777777777777777776653
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=3.6e-10 Score=105.39 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=92.9
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|+.++..|+|++|+..|++++. + + ..+++++|.|+.++++|++|+.++.++++
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~-~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD------P-H-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C-C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C-C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456678899999999999999999999853 1 2 46899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
++|.++.+++.+|.++..+|+|++|+..|++++++.|.+.
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999998753
No 123
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.15 E-value=1.1e-09 Score=105.91 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=98.1
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|++++|+..|++|++ ..|.+ ..++.++|.++..+++|++|+.++.++++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3567788899999999999999999999999 56765 56899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
++|.+..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999999999974
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.13 E-value=9.4e-11 Score=104.27 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...++++|.+++++|+|++|+..|++++.++|+++.+|+.+|.++..+|+|++|+..|++|++++|++ ..+...+..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999997 45666666665
Q ss_pred HHHHH
Q 008788 527 KQRRK 531 (553)
Q Consensus 527 ~~~~~ 531 (553)
..+..
T Consensus 115 ~~lg~ 119 (151)
T 3gyz_A 115 LRLKA 119 (151)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 54433
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.12 E-value=4.7e-10 Score=96.35 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...+.|+|.++++.|+|++|+.+++++|+++|.++.+|+.+|.++..+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999997 45666666665
Q ss_pred HHHHH
Q 008788 527 KQRRK 531 (553)
Q Consensus 527 ~~~~~ 531 (553)
..+..
T Consensus 92 ~~~~~ 96 (126)
T 4gco_A 92 VAMRE 96 (126)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 55443
No 126
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.12 E-value=5.5e-11 Score=122.02 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
++.||.|++||+++ .||+.|+++. +.|+.|.+|.|+++|||+.+|.||++|++++|.|+....||..+.
T Consensus 161 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l---- 229 (392)
T 1t11_A 161 AENGKRVSIDFVGS-IDGVEFEGGK------AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL---- 229 (392)
T ss_dssp CCTTCEEEEEEEEE-SSSSCCTTCE------EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT----
T ss_pred CCCCCEEEEEEEEE-ECCEEccCCC------ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC----
Confidence 78999999999999 5999999774 469999999999999999999999999999999986678886654
Q ss_pred CCCCCCCCeEEEEEEEEeeecccccc
Q 008788 125 PSTFPKDEELHFEIEMIDFAKAKIIA 150 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~~~~~~~~ 150 (553)
+|.+++|+|+|.++.....+.
T Consensus 230 -----aGk~~~F~V~v~~i~~~~lpe 250 (392)
T 1t11_A 230 -----KGKAAKFAIKVNKVEARELPE 250 (392)
T ss_dssp -----SSCEEEECCCEEEEEEEECCC
T ss_pred -----CCCeEEEEEEEEEEEcCCCCC
Confidence 389999999999997654333
No 127
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.12 E-value=9.7e-10 Score=92.15 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 008788 416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495 (553)
Q Consensus 416 ~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg 495 (553)
.|+..|+++++ ..|.+ ..+++++|.+++.+++|++|+..+.++++++|.+..+|+.+|.++..+|
T Consensus 3 ~a~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 3 AITERLEAMLA----QGTDN-----------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CHHHHHHHHHT----TTCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 57889999998 67766 5789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 008788 496 EFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 496 ~~~~A~~~l~~al~l~P~ 513 (553)
++++|+..|+++++++|.
T Consensus 68 ~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 68 DRAGARQAWESGLAAAQS 85 (115)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 999999999999999885
No 128
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=5.3e-10 Score=121.32 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=104.2
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|+|++|+..|++|++ ..|.+ ..+++++|.+|..++++++|+.+++++++++
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-----------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 56678899999999999999999999999 67766 5789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
|++..+++.+|.++..+|++++|++.|+++++++|++ ..+...+..+....
T Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-PYITAQLLNWRRRL 138 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987 45666666655544
No 129
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=1.5e-09 Score=102.85 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=93.3
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+++.|+|++|+..|+++++ ..|.+.. ...+++++|.|++++++|++|+..++++++.+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDN----RYPFGPY--------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTSTT--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 45567889999999999999999999998 5554421 24688999999999999999999999999999
Q ss_pred CCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCh
Q 008788 478 PAHVK---GLYRRGMAYMA------------------LGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 478 p~n~k---a~~r~g~a~~~------------------lg~~~~A~~~l~~al~l~P~~~ 515 (553)
|++.. |+|.+|.++.. +|++++|+..|+++++.+|++.
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 99876 89999999987 5799999999999999999974
No 130
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.10 E-value=6.4e-10 Score=118.09 Aligned_cols=117 Identities=10% Similarity=0.056 Sum_probs=103.0
Q ss_pred HHHHhhhcccccc---------CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc--------C
Q 008788 399 EKIRVTGNRLFKE---------GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------G 461 (553)
Q Consensus 399 ~~~k~~G~~~~~~---------g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl--------~ 461 (553)
..+...|..++.. |+|++|+..|++|++ +.|.+ ..+++++|.+|+.+ +
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLD-----------GRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHHHhhccccc
Confidence 4566778888888 999999999999999 67766 57899999999999 9
Q ss_pred CHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 008788 462 ECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRK 531 (553)
Q Consensus 462 ~~~~A~~~~~~al~~dp---~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~ 531 (553)
+|++|+.++++|++++| .++.+|+.+|.+|..+|+|++|++.|++|++++|++ ..++..+..+...+..
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999999999999997 4566666655554443
No 131
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.09 E-value=2.4e-10 Score=118.85 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=78.2
Q ss_pred CCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCc
Q 008788 167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE 246 (553)
Q Consensus 167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~ 246 (553)
..++.||.|++||+++ .||+.|+++. +.|+.|.+|.++++|||+++|.||++|+++.|.+|+..+||... .+++
T Consensus 156 ~~~~~gD~V~i~y~g~-~dG~~fd~~~-~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~----lag~ 229 (432)
T 1w26_A 156 GAVEAEDRVTIDFTGS-VDGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN----LKGK 229 (432)
T ss_dssp SCCCTTCEEEECEEEE-SSSCBCSSCC-CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTT----TSSC
T ss_pred CCCCCCCEEEEEEEEe-eCCeEccCCC-ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCC----CCCc
Confidence 5689999999999998 5999999876 78999999999999999999999999999999999999999653 2568
Q ss_pred eEEEEEEEeeee
Q 008788 247 EVHFEVELVHLI 258 (553)
Q Consensus 247 ~l~~~v~l~~~~ 258 (553)
+++|+|+|+++.
T Consensus 230 ~~~F~V~v~~v~ 241 (432)
T 1w26_A 230 AAKFAINLKKVE 241 (432)
T ss_dssp EEEEEEECCEEC
T ss_pred eEEEEEEEEEEe
Confidence 999999999985
No 132
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=2.3e-09 Score=103.65 Aligned_cols=106 Identities=12% Similarity=0.211 Sum_probs=95.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+++.|+|++|+..|+++++ ..|.+. ....+++++|.|++++++|.+|+..++++++.+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFT----YGRTHE--------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGG----GCSCST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCc--------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 56778999999999999999999999998 566542 125689999999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCh
Q 008788 478 PAH---VKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 478 p~n---~ka~~r~g~a~~~--------lg~~~~A~~~l~~al~l~P~~~ 515 (553)
|++ ..++|.+|.++.. +|++++|+..|+++++++|++.
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 854 6799999999999 9999999999999999999874
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=2e-09 Score=91.19 Aligned_cols=111 Identities=25% Similarity=0.441 Sum_probs=95.9
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+...|..++..|++++|+..|.++++ ..|.+ ..++.++|.++...+++++|+..+.+++..+|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH----cCCcc-----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 355678888999999999999999998 45544 467889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
+..+++.+|.++...|++++|+..|++++++.|.+ ..+...+..+.
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~ 113 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAY 113 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Confidence 99999999999999999999999999999999986 34544444443
No 134
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.06 E-value=2.2e-09 Score=102.41 Aligned_cols=102 Identities=24% Similarity=0.363 Sum_probs=94.3
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|+|++|+..|+++++. . .+ ..+++++|.|+..+++|++|+..+.++++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----~-~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 66 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL----H-KD-----------ITYLNNRAAAEYEKGEYETAISTLNDAVE 66 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----S-CC-----------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----h-cc-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999993 3 33 56899999999999999999999999999
Q ss_pred hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 476 ANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 476 ~dp~n-------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
++|.+ +.+++.+|.++..+|++++|+..|+++++++|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 67 QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence 99877 799999999999999999999999999999886
No 135
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.06 E-value=1.2e-09 Score=115.87 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=103.3
Q ss_pred HHHHHhhhccccccCCH-HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 398 AEKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~-~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
+..+...|..++..|+| ++|+..|++|++ .+|.+ ..+++++|.||+++++|++|+.++.+++++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVK----LEPEL-----------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678899999999999 999999999999 67766 678999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~l---------g~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
+|+ ..+++.+|.++..+ |++++|+..|++|++++|++ ..++..+..+....
T Consensus 167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSL 226 (474)
T ss_dssp CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence 998 79999999999999 99999999999999999997 45666666655444
No 136
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=3.6e-09 Score=102.32 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=94.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH--------cCCHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--------LGECRKSIEA 469 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k--------l~~~~~A~~~ 469 (553)
...+...|..+++.|+|.+|+..|+++++ ..|.+.. ...+++++|.|+++ ++++.+|+..
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQ----IYQIDPR--------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH----HCCCCch--------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 56677899999999999999999999999 5665421 24689999999999 9999999999
Q ss_pred HHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 470 CNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 470 ~~~al~~dp~n~ka~-----------------~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
++++++.+|++..+. +.+|.+|..+|+|++|+..|+++++..|++
T Consensus 120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 181 (261)
T 3qky_A 120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT 181 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 999999999987666 999999999999999999999999999985
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.05 E-value=5e-10 Score=101.52 Aligned_cols=129 Identities=11% Similarity=0.074 Sum_probs=100.1
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...++.++..|+|++|+..|++++. ..|.+ ..+++++|.+++.+++|++|+.++.++++++|++
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 77 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHH----HCCSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 34567888999999999999999999 67766 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008788 481 VKGLYRRGMA-YMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLTR 546 (553)
Q Consensus 481 ~ka~~r~g~a-~~~lg~~--~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~ 546 (553)
+.+++.+|.+ +...|++ ++|+..|+++++++|++ ..+...+..+........ +....|.+.+..
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~-~A~~~~~~al~~ 144 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYA-QAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHH-HHHHHHHHHHhh
Confidence 9999999999 8899999 99999999999999997 445555555544433222 233344444443
No 138
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.05 E-value=3.6e-09 Score=95.18 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=98.4
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+...|..++..|++++|+..|+++++ ..|.+ ..++.++|.++..++++++|+..+.+++..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLA----DAPDN-----------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566788888889999999999999988 45544 5688999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+....
T Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~ 157 (186)
T 3as5_A 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQM 157 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999986 44555555554443
No 139
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.04 E-value=3e-09 Score=110.85 Aligned_cols=119 Identities=24% Similarity=0.423 Sum_probs=103.2
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.....|..+++.|++++|+..|+++++ ..|.+.. ....++.++|.++.++|++++|+..++++++++|+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMK----TEPSIAE-------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH----HCCSSHH-------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 345569999999999999999999999 5665521 22468899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR 530 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (553)
++.+|+.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-QQIREGLEKAQRLLK 377 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999997 567777776655543
No 140
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.04 E-value=1e-09 Score=117.06 Aligned_cols=113 Identities=28% Similarity=0.491 Sum_probs=99.8
Q ss_pred CCCChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788 387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (553)
Q Consensus 387 ~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (553)
..++..++...+..+...|+.+++.|+|++|+..|++++. ..|.+ ..+++++|.|++++|+|++|
T Consensus 14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A 78 (537)
T 3fp2_A 14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNE-----------PVFYSNISACYISTGDLEKV 78 (537)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHH
Confidence 3567788888999999999999999999999999999999 67766 67899999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+..|+++++++|+++.+++.+|.++..+|++++|+..|+ ++.++|+..
T Consensus 79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~ 126 (537)
T 3fp2_A 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD 126 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC------
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence 999999999999999999999999999999999999996 999998753
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.04 E-value=4.1e-10 Score=99.65 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...++++|.+++..|+|++|+..+.+++.++|.++.+|+.+|.++..+|+|++|+..|++|++++|++. .+...+..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP-RFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999974 4555555444
Q ss_pred HH
Q 008788 527 KQ 528 (553)
Q Consensus 527 ~~ 528 (553)
..
T Consensus 100 ~~ 101 (148)
T 2vgx_A 100 LQ 101 (148)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 142
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=3.4e-10 Score=125.69 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=70.6
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ 481 (553)
...|..++..|+|++|+..|++|++ ++|.+ ..+++|+|.|+.++|+|++ +.+|++|++++|+++
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~-----------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~ 534 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLD----TFPGE-----------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI 534 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH----HSTTC-----------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence 3444444444444444444444444 33333 4577788888888888888 888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
.+|+++|.++..+|++++|+++|++|++++|++ ..++..+.
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~ 575 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSA 575 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHH
Confidence 888888888888888888888888888888875 33443333
No 143
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.01 E-value=3.6e-09 Score=105.98 Aligned_cols=109 Identities=20% Similarity=0.382 Sum_probs=99.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
++.+...|+.++..|+|++|+..|+++++ ..|.+ ..+++++|.|++.++++++|+..+.++++++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56778899999999999999999999999 66665 5689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK---SSEPDATAAL 522 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P---~~~~~~~~~l 522 (553)
|++..+++.+|.++..+|++++|+..|+++++++| ++ ..+...+
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l 114 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQL 114 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHH
Confidence 99999999999999999999999999999999999 64 3444444
No 144
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=3.6e-09 Score=89.59 Aligned_cols=100 Identities=26% Similarity=0.490 Sum_probs=90.8
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
..+...|..++..|++++|+..|.+++. ..|.+ ..+++++|.++..++++++|+..+.+++..+|
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3455678888899999999999999998 45544 46788999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+..+++.+|.++..+|++++|+..|+++++++|+
T Consensus 101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999986
No 145
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=5.4e-10 Score=124.10 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=102.3
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
..+...|..+++.|+|++|+..|++|++ .+|.+ ..+++++|.+++++++|++|+.++++|++++|
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 498 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWR-----------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFP 498 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4566788999999999999999999999 67776 67999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR 530 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (553)
+++.+|+.+|.++..+|+|++ +++|++|++++|++ ..+...+..+.....
T Consensus 499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-ISAAFGLARARSAEG 548 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-HHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-HHHHHHHHHHHHHcC
Confidence 999999999999999999999 99999999999997 456655655554443
No 146
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.00 E-value=3.1e-09 Score=95.57 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=100.1
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|++.+|+..|++++. ..|.+ ..++.++|.++..++++++|+..+.++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD----ADAFD-----------VDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC----TTSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 466778899999999999999999999887 55554 568899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
+|.+..+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 120 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVAL 120 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 34544444443
No 147
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.00 E-value=2e-09 Score=109.19 Aligned_cols=102 Identities=23% Similarity=0.409 Sum_probs=86.9
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|++++|+..|+++++ ..|.+ ..+++++|.++.++|++++|+..+.++++++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT----VRPED-----------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34456778888888888888888888888 56655 5688899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999998763
No 148
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.99 E-value=7e-09 Score=98.12 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=57.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|++++|+..|+++++ ..|.+ ..++.++|.++..++++++|+..+.++++.+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALE----LDSSA-----------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCcc-----------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 34455667777777777777777777776 33433 3344555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
|.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 5555555555555555555555555555555555543
No 149
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.98 E-value=2.4e-09 Score=101.40 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=83.9
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|+++++ ..|.+ ..++.++|.++.+++++++|+..+.++++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----ENKED-----------AIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp --------------------CCTTHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 366677899999999999999999999998 66655 568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 135 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-GDLFYMLGTVL 135 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-HHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 34554444443
No 150
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.98 E-value=3.4e-09 Score=107.43 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=92.2
Q ss_pred hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (553)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka 483 (553)
.|..+...|++++|+..|++++. ..|... ...+++++|.++.+++++++|+..+.++++++|+++.+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~----~~p~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 249 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAH----QNGDMI---------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHH----HSCSSC---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH----hCcCcc---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 48888899999999999999999 566510 15689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 484 ~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
|+.+|.++..+|++++|+..|+++++++|++ ..+...+..+...
T Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 4455555554443
No 151
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.98 E-value=8.8e-09 Score=101.88 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCh
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE-AQRDFEMMMKVDKSSE 515 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~-A~~~l~~al~l~P~~~ 515 (553)
..+++++|.|++++|+|++|+..++++|+++|+++.+++++|.++..+|++++ |.+.++++++++|++.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 45788889999999999999999999999999999999999998988988876 5678888999999873
No 152
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.98 E-value=3.3e-09 Score=107.31 Aligned_cols=102 Identities=22% Similarity=0.363 Sum_probs=90.4
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+++.|++++|+..|++++. ..|.+ ..+++++|.++.++|++++|+..++++++++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566788888899999999999999998 56655 5688999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
|++..+++.+|.++..+|++++|+..|+++++++|++
T Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999998876
No 153
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.97 E-value=3.2e-09 Score=102.61 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=77.5
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChh----------------H-H----HHH-----hhhhhHHHHHHH
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------------E-G----KVF-----VGKRNLLHLNVA 454 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~e----------------e-~----~~~-----~~~~~~~~~nla 454 (553)
+...|..++..|+|++|+..|+++++ ..|.+.+ + . +.+ ......++.++|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEA----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 44566677777777777777777776 3443310 0 0 000 011234577777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
.|+..++++++|+.++.++++++|.++.+++.+|.++..+|++++|+..|+++++++|.+ ..+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~ 149 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-PKVFYELG 149 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-HHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-HHHHHHHH
Confidence 778778888888888888888777777777788888888888888888888887777775 33444443
No 154
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.97 E-value=3.5e-09 Score=86.71 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
..+++++|.+++++++|++|+.+++++++++|+++.+|+.+|.++..+|++++|++.|++++++.|.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5789999999999999999999999999999999999999999999999999999999999999875
No 155
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.96 E-value=1.2e-08 Score=106.35 Aligned_cols=104 Identities=20% Similarity=0.388 Sum_probs=97.9
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..+++.|+|.+|+..|+++++ ..|.+ ..+++++|.|++.++++++|+..+.++++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4577888999999999999999999999998 56665 67899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+|++..+++.+|.+|..+|++++|+..|+++++++|++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999985
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.96 E-value=1.2e-08 Score=86.64 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
.++++|.++++.|++.+|+..+.++++.+|+++.+|+.+|.++..+|++++|+..|++|++++|++ ..+...+..+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999997 4566666666555
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 008788 529 RRKLKVRLENSLKGCLTRS 547 (553)
Q Consensus 529 ~~~~~~~~~~~~~~mf~~~ 547 (553)
.....+. ...|.+.....
T Consensus 98 ~g~~~~A-~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAA-LASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHH-HHHHHHHHC--
T ss_pred cCCHHHH-HHHHHHHHHhC
Confidence 5443333 34555554433
No 157
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.96 E-value=6.6e-09 Score=102.81 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=87.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHH----HHcCCHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKLGECRKSIEACNKV 473 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~----~kl~~~~~A~~~~~~a 473 (553)
...+...|..+.+.|++++|+..|+++++ ..|.+ ...+++.++ ...+++++|+..++++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~----~~p~~-------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQD----QDEDA-------------TLTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCc-------------HHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 34455677888888999999999999888 45544 123333332 2348999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++ .++...+..+
T Consensus 193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~ 243 (291)
T 3mkr_A 193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVL 243 (291)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 4455444433
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.95 E-value=3e-09 Score=91.27 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+.++.|+|.++++.|+|++|+.++++||+++|+++.+|+.+|.+|..+|+|++|+++|++|++++|++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999875
No 159
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=6.6e-09 Score=102.51 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=94.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH-----------
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS----------- 466 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A----------- 466 (553)
...+...|..+...|++++|+..|++++. .+|.+ ..+++++|.+++.+|++++|
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQN-----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSC-----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcc-----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 45677899999999999999999999999 77877 44666666666666666655
Q ss_pred -----------------------HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHH
Q 008788 467 -----------------------IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAAL 522 (553)
Q Consensus 467 -----------------------~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~-~~~~~~l 522 (553)
+..+.++++.+|+++.+++.+|.++...|++++|++.|+++++++|++. ..++..|
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 4555666788999999999999999999999999999999999999862 3456655
Q ss_pred HHHHHHH
Q 008788 523 SKLKKQR 529 (553)
Q Consensus 523 ~~l~~~~ 529 (553)
..+-...
T Consensus 262 ~~~~~~~ 268 (287)
T 3qou_A 262 QEILAAL 268 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5554443
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.94 E-value=2e-09 Score=94.01 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...++++|.++++.++|.+|+..+.+++..+|+++.+|+.+|.++..+|+|++|+..|+++++++|++. .+...+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP-RFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999974 4555555444
Q ss_pred HH
Q 008788 527 KQ 528 (553)
Q Consensus 527 ~~ 528 (553)
..
T Consensus 97 ~~ 98 (142)
T 2xcb_A 97 LQ 98 (142)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 161
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.94 E-value=1e-08 Score=97.92 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
..++.++|.++.+++++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 219 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLA 219 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777765 33444444443
No 162
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=6.5e-09 Score=90.98 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHH
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDAN-P-AHVKGLYR 486 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al~~d-p-~n~ka~~r 486 (553)
.....+.+.|.+++. ..+.+ ..+.+|+|.|+.+.+ +..+++..+..+++.+ | ++..++|.
T Consensus 12 ~~l~~~~~~y~~e~~----~~~~~-----------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~ 76 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 76 (152)
T ss_dssp HHHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHH
Confidence 345667788888876 44444 568899999999988 6779999999999999 7 67999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 487 ~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
+|.+|+++++|++|+++++++|+++|+| ..+....+.+.+++
T Consensus 77 LAv~~~kl~~Y~~A~~y~~~lL~ieP~n-~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 77 LAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 44666555555444
No 163
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.94 E-value=1.4e-08 Score=80.49 Aligned_cols=78 Identities=23% Similarity=0.438 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
..+++++|.++..+++|.+|+.++.++++++|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999987 4455555444
No 164
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=1e-08 Score=104.87 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
..++.++|.++.++|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++ ..+...+..+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777765 3344434333
No 165
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.94 E-value=1.3e-08 Score=94.65 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788 448 LLHLNVAACLLKL-GECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (553)
Q Consensus 448 ~~~~nla~~~~kl-~~~~~A~~~~~~al~--~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~ 524 (553)
.++.++|.++..+ +++++|+..+.++++ .+|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~ 155 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF-PPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHH
Confidence 4556666666666 666666666666666 445556666666666666666666666666666666664 234444433
Q ss_pred H
Q 008788 525 L 525 (553)
Q Consensus 525 l 525 (553)
+
T Consensus 156 ~ 156 (225)
T 2vq2_A 156 T 156 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.94 E-value=8.7e-09 Score=104.14 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=94.0
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+...|..+++.|+|.+|+..|+++++ ..|.+ ..+++++|.|+.+++++++|+..+.++++++|+
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 130 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKPD 130 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 345788999999999999999999999 67766 568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 999999999999999999999999999999999864
No 167
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.93 E-value=6.2e-09 Score=103.14 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=98.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+...|..++..|++++|+..|+++++.......... ......++.++|.++.++|++++|+.+++++++++
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 344567788888888888888888888885433221110 01125689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
|++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 313 (330)
T 3hym_B 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-TFSVTMLGHC 313 (330)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-hHHHHHHHHH
Confidence 9999999999999999999999999999999999997 4455555544
No 168
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.93 E-value=1.1e-08 Score=101.21 Aligned_cols=101 Identities=19% Similarity=0.328 Sum_probs=92.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+...|..++..|++++|+..|++++. ..|.+ ..++.++|.++..++++++|+..+.++++.+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPDD-----------AQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34566788889999999999999999998 56655 5688999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
|++..+++.+|.++..+|++++|+..|+++++++|+
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999998
No 169
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=9e-09 Score=93.35 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=80.7
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH----------------
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR---------------- 464 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~---------------- 464 (553)
+...|..++..|++++|+..|+++++ .+|.+ ..+++++|.+++.+|+++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 73 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD----ELQSR-----------GDVKLAKADCLLETKQFELAQELLATIPLEYQDN 73 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH----HHHTS-----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCCh
Confidence 44667777778888888888888777 44444 233444444444444433
Q ss_pred ------------------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHH
Q 008788 465 ------------------KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKL 525 (553)
Q Consensus 465 ------------------~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~-~~~~~~l~~l 525 (553)
+|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++. ..++..+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence 356666677788899999999999999999999999999999999999742 3355555554
Q ss_pred HHH
Q 008788 526 KKQ 528 (553)
Q Consensus 526 ~~~ 528 (553)
-..
T Consensus 154 ~~~ 156 (176)
T 2r5s_A 154 LSA 156 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 170
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1e-08 Score=87.20 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...+.++|.++++.++|++|+..++++++++|+++.+|+.+|.++..+|+|++|+.+|+++++++|++ ..+...+..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999997 44555555554
Q ss_pred HHH
Q 008788 527 KQR 529 (553)
Q Consensus 527 ~~~ 529 (553)
...
T Consensus 83 ~~~ 85 (126)
T 3upv_A 83 IAV 85 (126)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 171
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.92 E-value=9.5e-09 Score=99.22 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=95.4
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|++++|+..|+++++ ..|.+ ..++.++|.|+..+++|++|+.+++++++++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVD----RDTTR-----------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 44467788889999999999999999999 56655 5689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
|.++.+++.+|......+++++|+..|+++++++|++ ..+...+..+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~ 186 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARAN 186 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHH
Confidence 9999999999944555569999999999999999997 33444444433
No 172
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.92 E-value=1.7e-08 Score=93.98 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK-SSEPDATAALSKL 525 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P-~~~~~~~~~l~~l 525 (553)
..++.++|.++.+++++++|+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++++| .+ ..+...+..+
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~ 191 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGWKI 191 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999 76 3454444444
Q ss_pred HH
Q 008788 526 KK 527 (553)
Q Consensus 526 ~~ 527 (553)
..
T Consensus 192 ~~ 193 (225)
T 2vq2_A 192 AK 193 (225)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 173
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.92 E-value=9.4e-10 Score=89.38 Aligned_cols=65 Identities=22% Similarity=0.464 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k-a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+++|.++++.++|++|+..++++++.+|+++. +++.+|.++..+|++++|+..|+++++++|++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 45677777777777777777777777777777 777777777777777777777777777777653
No 174
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.91 E-value=8.5e-09 Score=98.43 Aligned_cols=123 Identities=14% Similarity=0.230 Sum_probs=71.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChh----------------H-HH------HHhhhhhHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------------E-GK------VFVGKRNLLHLNVA 454 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~e----------------e-~~------~~~~~~~~~~~nla 454 (553)
+..+...|..++..|++++|+..|+++++ ..|.+.. + .+ ........+++++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE----IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 55566677777777777777777777766 2333210 0 00 00011134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 455 ACLLKLGECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~--~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
.++..++++++|+..+.+++. .+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 184 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ-PSVALEMADL 184 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-HHHHHHHHHH
Confidence 666666666666666666666 566666666666666666666666666666666666664 2344334333
No 175
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=98.91 E-value=8.6e-10 Score=113.15 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=74.5
Q ss_pred CCCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCc
Q 008788 167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE 246 (553)
Q Consensus 167 ~~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~ 246 (553)
..++.||.|++||+++ .||+.|+++ .++|+.|.+|.++++|||+++|.||++|+++.|.|+....|+... .+++
T Consensus 159 ~~~~~gD~V~i~y~g~-~dG~~fd~~-~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~----laGk 232 (392)
T 1t11_A 159 EAAENGKRVSIDFVGS-IDGVEFEGG-KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN----LKGK 232 (392)
T ss_dssp CCCCTTCEEEEEEEEE-SSSSCCTTC-EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----TSSC
T ss_pred CCCCCCCEEEEEEEEE-ECCEEccCC-CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC----CCCC
Confidence 4588999999999997 699999877 468999999999999999999999999999999998445566442 2678
Q ss_pred eEEEEEEEeeee
Q 008788 247 EVHFEVELVHLI 258 (553)
Q Consensus 247 ~l~~~v~l~~~~ 258 (553)
+++|+|+|+++.
T Consensus 233 ~~~F~V~v~~i~ 244 (392)
T 1t11_A 233 AAKFAIKVNKVE 244 (392)
T ss_dssp EEEECCCEEEEE
T ss_pred eEEEEEEEEEEE
Confidence 999999999985
No 176
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=1.5e-08 Score=103.75 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=87.0
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+...|..+.+.|++.+|+..|++|+. .+|.+ ..+++++|.++..++++++|+..+.+++.++|+
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVT----LDPNF-----------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 345566666677777777777777776 45544 567889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 280 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANA 280 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence 99999999999999999999999999999999986 3454444443
No 177
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.6e-08 Score=83.29 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
...++++|.+++.+++|++|+..++++++++|+++.+++.+|.++..+|+|++|+.+|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999986
No 178
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=1.4e-08 Score=96.14 Aligned_cols=139 Identities=15% Similarity=0.162 Sum_probs=103.6
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH------------------
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK------------------ 459 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k------------------ 459 (553)
...+...|..+++.|+|++|+..|+++++ ..|.+.. ...+++++|.|+.+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~P~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 108 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR----LNPTHPN--------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRD 108 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHHC--------------C
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence 34567889999999999999999999999 6776522 12467788888876
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHH
Q 008788 460 LGECRKSIEACNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATA 520 (553)
Q Consensus 460 l~~~~~A~~~~~~al~~dp~n~ka~-----------------~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~--~~~~ 520 (553)
++++++|+..++++++.+|++..++ +.+|.++...|+|++|+..|+++++..|++.. ++..
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 5789999999999999999988665 67899999999999999999999999999742 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 008788 521 ALSKLKKQRRKLKVRLENSLKGCLTRSLG 549 (553)
Q Consensus 521 ~l~~l~~~~~~~~~~~~~~~~~mf~~~~~ 549 (553)
.+..+..++.... .-.+.|+.+....+.
T Consensus 189 ~l~~~~~~~g~~~-~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 189 LMENAYRQMQMNA-QAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCCcH-HHHHHHHHHHhhCCC
Confidence 3333333332222 224455655554443
No 179
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.89 E-value=8.3e-09 Score=101.93 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=92.5
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIEACNKVLD 475 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~al~ 475 (553)
.+..+.+.|+.+.+.|+|++|+..|++|+....... + ......++.|+|.+|..+ +++++|+.++++|++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--Q-------FRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 466778889999999999999999999998654321 1 111256899999999995 999999999999999
Q ss_pred hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 476 ~dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
+.|.+ ..++.++|.++..+|+|++|+..|++++++.|++.
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 98754 57899999999999999999999999999999763
No 180
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.89 E-value=1.7e-08 Score=97.35 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=94.9
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
..+..+...++|++|+..|+++++ ..+.++ .....+++++|.++..++++++|+..+.++++++|.++.
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 78 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILA----SRALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 78 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHT----SSCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred ceeeccCccchHHHHHHHHHHHHh----cccccC-------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence 345566778999999999999998 333221 122678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 483 a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
+++.+|.++..+|++++|+..|+++++++|.+. .+...+..+...
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~ 123 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc-HHHHHHHHHHHH
Confidence 999999999999999999999999999999874 455555544433
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.88 E-value=2.6e-08 Score=105.57 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~-~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (553)
..+.++.+....+.+..+..+|+|++|+..|+++|+..... .+.+ ......++|+|.+|..+|+|++|+.+
T Consensus 302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~H--------p~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTN--------LYVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTS--------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34555667777788888889999999999999999976553 3333 22367899999999999999999999
Q ss_pred HHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC
Q 008788 470 CNKVLDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSS 514 (553)
Q Consensus 470 ~~~al~~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-----~P~~ 514 (553)
+.++|++. |+-+.+++++|.+|..+|+|++|+..|++|+++ -|++
T Consensus 374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999773 444678999999999999999999999999986 5666
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.87 E-value=1.6e-08 Score=80.12 Aligned_cols=84 Identities=26% Similarity=0.412 Sum_probs=76.2
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..++|++|+..|++|++ ..|.+ ..+++++|.|+.+++++++|+.++.+++++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456677899999999999999999999999 56655 568899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 008788 477 NPAHVKGLYRRGMAYMALG 495 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg 495 (553)
+|++..+++.+|.++..+|
T Consensus 73 ~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999998765
No 183
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.86 E-value=2.2e-08 Score=99.09 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=95.9
Q ss_pred HHHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 399 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 399 ~~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
..+...|..++..| ++++|+..|++++. ..|.+ ..++.++|.++..++++++|+..+.++++++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATT----LEKTY-----------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHT----TCTTC-----------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 34667788888888 89999999999988 56655 5678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+...
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~ 205 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAFQ 205 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 3455555544433
No 184
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=7.2e-09 Score=102.38 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=88.7
Q ss_pred HHHHHhhhcccccc-CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 398 AEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~-g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
+..+...|..+... |++++|+..|++|++....... ......++.|+|.++.++|+|++|+.++++++++
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55677889999886 9999999999999995442211 1112468999999999999999999999999999
Q ss_pred CCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 477 NPAHVK-------GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 477 dp~n~k-------a~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+|++.. +|+++|.++..+|++++|+..|+++++++|++
T Consensus 188 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 987643 68999999999999999999999999999985
No 185
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.85 E-value=2.1e-08 Score=89.61 Aligned_cols=82 Identities=24% Similarity=0.215 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...++++|.++++.++|++|+..++++++++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|++ ..+...+..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999997 44655555554
Q ss_pred HHH
Q 008788 527 KQR 529 (553)
Q Consensus 527 ~~~ 529 (553)
...
T Consensus 90 ~~~ 92 (164)
T 3sz7_A 90 FDM 92 (164)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 186
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.84 E-value=1.6e-08 Score=97.53 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=93.5
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|+|.+|+..|++|++........+ ......++.++|.++..++++++|+.++.++++
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566788899999999999999999999999654432211 112367899999999999999999999999999
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 476 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 476 ~--------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+ +|....+++.+|.++..+|++++|+..|++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8 5778899999999999999999999999999998
No 187
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=1.5e-08 Score=99.89 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=91.6
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|++|++.+..... + ......+++|+|.+|.++++|++|+.++++++++
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c-------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4556888999999999999999999999987665422 2 2234678999999999999999999999999988
Q ss_pred CCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 008788 477 NPAH------VKGLYRRGMAYMALG-EFEEAQRDFEMMMKVD 511 (553)
Q Consensus 477 dp~n------~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~ 511 (553)
.+.. +.+|+.+|.++..+| .+++|++.|++|+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6544 889999999999999 5799999999999873
No 188
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=2.3e-08 Score=108.40 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=95.4
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|++++|+..|++|++ ..|.+ ..+++++|.||.+++++++|+..++++++++
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASD----AAPEH-----------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45567889999999999999999999999 67766 5689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCC
Q 008788 478 PAHVKGLYRRGMAYMAL---GEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~l---g~~~~A~~~l~~al~l~P~~ 514 (553)
|++..+++.+|.++..+ |++++|++.|+++++++|++
T Consensus 122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999 99999999999999999985
No 189
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.80 E-value=3.2e-08 Score=103.92 Aligned_cols=121 Identities=16% Similarity=0.065 Sum_probs=93.7
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|+|++|+..|++|++.+....+.. .......+|.|+|.+|..+|+|++|+.++++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 44456789999999999999999999999765432211 011225678999999999999999999999999873
Q ss_pred --------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 478 --------PAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 478 --------p~n~ka~~r~g~a~~~lg--~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+..+.++..+|.++..++ +|++|+.+|++|++++|++ .++...+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~~~ 181 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLAIA 181 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 456788889998887764 6999999999999999987 4455444433
No 190
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.80 E-value=3.3e-08 Score=97.70 Aligned_cols=103 Identities=13% Similarity=0.050 Sum_probs=94.2
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|+|++|+..|+++++ ..|.+ ..++.++|.++..++++++|+..+.++++++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ----AAPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34456788899999999999999999999 56655 5688999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
|.+..+++.+|.++..+|++++|+..|+++++++|.+.
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 123 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 123 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence 99999999999999999999999999999999999863
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.80 E-value=2.4e-08 Score=88.50 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA-------HVK-----GLYRRGMAYMALGEFEEAQRDFEMMMKV---- 510 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-------n~k-----a~~r~g~a~~~lg~~~~A~~~l~~al~l---- 510 (553)
...+.|+|.+++++|+|++|+..|++||+++|+ +.. +|+++|.|+..+|+|++|+.+|.+||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999999999 555 9999999999999999999999999999
Q ss_pred ---CCCChHHHH
Q 008788 511 ---DKSSEPDAT 519 (553)
Q Consensus 511 ---~P~~~~~~~ 519 (553)
+|++ ..++
T Consensus 91 ~e~~pd~-~~A~ 101 (159)
T 2hr2_A 91 GELNQDE-GKLW 101 (159)
T ss_dssp CCTTSTH-HHHH
T ss_pred ccCCCch-HHHH
Confidence 9985 3344
No 192
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=3.8e-08 Score=79.66 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=55.1
Q ss_pred hhH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 446 RNL-LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 446 ~~~-~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
... +++++|.|+..++++++|+.++.++++++|++..++++ +.+.+|+..|++++.++|++
T Consensus 33 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 33 GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 346 89999999999999999999999999999999998865 67888999999999988875
No 193
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=3.3e-08 Score=98.33 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=88.3
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..+.. |+|++|+..|++|++....... ......++.|+|.+|.++|+|++|+.++++++++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667778888888 9999999999999886543211 1123578999999999999999999999999998
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+.+ ..+++.+|.++..+|++++|+..|++++ ++|+.
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 7644 3588999999999999999999999999 99975
No 194
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.78 E-value=5.4e-08 Score=103.63 Aligned_cols=127 Identities=14% Similarity=0.096 Sum_probs=91.9
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCC----------------ChhHHH------HHhhhhhHHHHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ----------------DDEEGK------VFVGKRNLLHLNVA 454 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~----------------~~ee~~------~~~~~~~~~~~nla 454 (553)
.+..+...|..++..|++++|+..|+++++. .|. .++..+ ........++.++|
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 4555666666666666666666666666652 222 000000 01112256889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
.++..+++|++|+..+.++++++|++..+++.+|.++..+|++++|+..|+++++++|++. .+...+..+...
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 390 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP-EVPTFFAEILTD 390 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999873 455555554443
No 195
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=5.1e-08 Score=86.27 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=85.7
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
...+...|..++..|+|.+|+..|.++++ ..|.+ ..+++++|.|+..++++++|+.++.++++++
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 44566789999999999999999999999 56655 5689999999999999999999999999999
Q ss_pred CCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 008788 478 PAHVKGLYRR--GMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 478 p~n~ka~~r~--g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|.+..++..+ +..+..+|++++|+..+.++..+
T Consensus 112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999988555 44488889999999999988665
No 196
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=8.9e-08 Score=82.09 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...++++|.++++.++|++|+..+.+++.++|+++.+++.+|.++..+|+|++|+..|+++++++|++ ..+...+..+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999997 44555555554
Q ss_pred HHH
Q 008788 527 KQR 529 (553)
Q Consensus 527 ~~~ 529 (553)
...
T Consensus 88 ~~~ 90 (137)
T 3q49_B 88 LEM 90 (137)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.74 E-value=6.3e-08 Score=84.65 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=92.8
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...+..+...|..++..|+|++|+..|.+|+........ ......++.++|.++..++++++|+.++.+++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346778889999999999999999999999996554221 11235689999999999999999999999999
Q ss_pred hhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 475 ~~dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
++.+.. ..+++.+|.++..+|++++|+..+++++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 886543 67899999999999999999999999998843
No 198
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.74 E-value=4.9e-08 Score=94.00 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=93.6
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|++++|+..|.+|+.........+ ......++.++|.++..++++++|+.++.++++
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566788899999999999999999999999765432211 012367899999999999999999999999999
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 476 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 476 ~--------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+ +|....+++.+|.++..+|++++|+..|++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9 7788899999999999999999999999999987
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.73 E-value=1.3e-07 Score=98.64 Aligned_cols=121 Identities=10% Similarity=0.068 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (553)
Q Consensus 393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~-~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 471 (553)
+.+..+....+.+......|+|++|+..|++||+..... .+.+. ..+..++|+|.+|..+|+|++|+.++.
T Consensus 293 ~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~~~ 364 (433)
T 3qww_A 293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV--------YMLHMMYQAMGVCLYMQDWEGALKYGQ 364 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH--------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch--------HHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 334445555555666667789999999999999976553 34332 236789999999999999999999999
Q ss_pred HHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHH
Q 008788 472 KVLDA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAAL 522 (553)
Q Consensus 472 ~al~~--------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-----~P~~~~~~~~~l 522 (553)
++|++ .|+-+..|+++|.+|..+|+|++|+..|++|+++ -|++ +.+....
T Consensus 365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~l~ 427 (433)
T 3qww_A 365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH-PYISEIK 427 (433)
T ss_dssp HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHH
Confidence 99977 3445678999999999999999999999999986 5776 3344433
No 200
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=4.8e-08 Score=79.95 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSK 524 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~--~~~~~~~~l~~ 524 (553)
..+++++|.+++.++++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|. + ..+...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998 7 346555555
Q ss_pred HHHHH-HHHHHHHHHHHHhhcccccC
Q 008788 525 LKKQR-RKLKVRLENSLKGCLTRSLG 549 (553)
Q Consensus 525 l~~~~-~~~~~~~~~~~~~mf~~~~~ 549 (553)
+.... ... .+..+.+.++....++
T Consensus 85 ~~~~~~~~~-~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKE-VEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCS-HHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCH-HHHHHHHHHHhhcccC
Confidence 54444 322 3344556666555444
No 201
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.71 E-value=7e-08 Score=98.72 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=95.6
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|+|++|+..|.+|++....... ......+++|+|.||..++++++|+.++.++++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677788999999999999999999999997654321 113367899999999999999999999999999
Q ss_pred -----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 476 -----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 476 -----~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+|..+.+++.+|.++..+|++++|+..+++++++.+.
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999998553
No 202
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.70 E-value=1.7e-07 Score=101.43 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=89.2
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n 480 (553)
+...|..+++.|++++|+..|+++++......... .....++.+++.++.++|++++|+..++++++++|++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE--------KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS--------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch--------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 44555666666666666666666665322111111 0125689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~ 524 (553)
+.+|+.+|.+|...|++++|++.|+++++++|++ ..+...|..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~ 592 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLLKR 592 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-hHHHHHHHH
Confidence 9999999999999999999999999999999997 446555543
No 203
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.4e-08 Score=102.26 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=85.8
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK---LGECRKSIEACNKVLDANP 478 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k---l~~~~~A~~~~~~al~~dp 478 (553)
...|..++..|++++|+..|++++.... .+.. ......+++++|.++.. ++++++|+..+.++++.+|
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~----~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELEN----KLDG-----IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH----TSSS-----CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhh----ccch-----HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 3445555555555555555555555211 1100 00013389999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~ 492 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAITFA 492 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 999999999999999999999999999999999986 4555555443
No 204
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=3.2e-08 Score=98.43 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=88.4
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+.+.|+.+.+.|+|++|+..|++|++...... + ......++.|+|.+|.. ++|++|+.++++|+++
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--T-------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--C-------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 355667778888888888888888888888644321 1 11235689999999999 9999999999999999
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+.. ..+++++|.+|..+|+|++|+..|++++++.|.+
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 7643 6789999999999999999999999999997654
No 205
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=5.5e-08 Score=95.89 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=89.8
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|++|++.+... +.+. .....+++|+|.+|.++++|++|+.++++++++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~-------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNE-------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-Cccc-------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46678889999999999999999999999865543 2221 112368999999999999999999999999988
Q ss_pred CCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 008788 477 NPA------HVKGLYRRGMAYMALGEFEEA-QRDFEMMMKVD 511 (553)
Q Consensus 477 dp~------n~ka~~r~g~a~~~lg~~~~A-~~~l~~al~l~ 511 (553)
.+. ...+|+++|.++..+|++++| ...|++|+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 642 278999999999999999999 78899999774
No 206
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.68 E-value=1.1e-07 Score=97.31 Aligned_cols=108 Identities=10% Similarity=0.103 Sum_probs=94.0
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..+...|+|++|+..|.+|++...... + ......+++|+|.||..+|++++|+.++.+|++
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--Q-------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--C-------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466778899999999999999999999999665432 1 122367899999999999999999999999999
Q ss_pred -----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 476 -----AN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 476 -----~d-p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
.+ |..+.+++.+|.++..+|++++|+..|++|+++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 56 88899999999999999999999999999999843
No 207
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=8.5e-08 Score=94.50 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=86.3
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA- 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 476 (553)
+..+...|..++..++|++|+..|++|++... ...+. .....+++|+|.+|..+++|++|+.++.+|++.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~----~~~~~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQL----TGIDV-----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC----CCSCT-----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc----ccccH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44555688888889999999999999998322 11110 122568999999999999999999999999953
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 477 ------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+..+.+++.+|.+|..+|+|++|+..+++|+++.+.
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2344678999999999999999999999999998654
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.66 E-value=2.1e-07 Score=97.12 Aligned_cols=124 Identities=10% Similarity=0.100 Sum_probs=95.8
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc-CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~-~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
.+..+...-..+.++|+|++|+..|+++++..... .+.+ .....++.|+|.+|..+|+|++|+.++.++|+
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN--------IYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc--------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34455555666778899999999999999855443 3333 22467899999999999999999999999997
Q ss_pred hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHH
Q 008788 476 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 476 ~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-----~P~~~~~~~~~l~~l~~~~ 529 (553)
+. |.-+..++++|.+|..+|+|++|+..|++|+++ -|++ +.+...+..+....
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH-SLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHH
Confidence 72 444678999999999999999999999999986 6666 44554444444433
No 209
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.66 E-value=1.4e-07 Score=82.29 Aligned_cols=108 Identities=21% Similarity=0.228 Sum_probs=90.6
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|++|+........ ......++.++|.++..++++++|+.++.+++++
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999997654321 1123568999999999999999999999999987
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 477 dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+ ....+++.+|.++..+|++++|+..+++++++...
T Consensus 119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 42 23678999999999999999999999999987654
No 210
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.66 E-value=1.1e-07 Score=97.61 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=94.2
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...+..+...|..++..|+|.+|+..|++|++ ..|.+. .....+++++|.+|..+++|++|+.++.+++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQ----AGTEDL-------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----hcccCh-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45677788999999999999999999999999 566552 1235689999999999999999999999999
Q ss_pred hh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 475 DA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 475 ~~------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
++ ++....+++.+|.++..+|++++|+..|++++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 98 67788999999999999999999999999999983
No 211
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.66 E-value=1e-07 Score=93.45 Aligned_cols=110 Identities=23% Similarity=0.295 Sum_probs=92.8
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|++++|+..|++++..+......+ ......++.++|.++..+|++++|+..+.+++++
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677889999999999999999999999765542222 1123568999999999999999999999999974
Q ss_pred -------------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 477 -------------------------------------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 477 -------------------------------------------------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~a 507 (553)
+|.++.+++.+|.+|..+|++++|+..|++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4667889999999999999999999999999
Q ss_pred HHhCCC
Q 008788 508 MKVDKS 513 (553)
Q Consensus 508 l~l~P~ 513 (553)
+++.|+
T Consensus 305 l~l~~~ 310 (311)
T 3nf1_A 305 MRSRKQ 310 (311)
T ss_dssp HHHHC-
T ss_pred HHHhhc
Confidence 999875
No 212
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.64 E-value=1.4e-07 Score=84.04 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
+..+.++|.++++.++|.+|+..+.+|+.+ +|.+..+|+++|.||..+|+|++|+.++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999999 78888999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHH
Q 008788 509 KVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 509 ~l~P~~~~~~~~~l~~l~~ 527 (553)
+++|++. .+...+..+..
T Consensus 91 ~~~p~~~-~a~~~~g~~~~ 108 (162)
T 3rkv_A 91 KREETNE-KALFRRAKARI 108 (162)
T ss_dssp HHSTTCH-HHHHHHHHHHH
T ss_pred hcCCcch-HHHHHHHHHHH
Confidence 9999973 34444444433
No 213
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=3.4e-07 Score=90.14 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=83.1
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH---h
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL---D 475 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al---~ 475 (553)
......|..+...|+|++|+..|++|+......... .....+++++|.+|..+++|++|+.++.+|+ +
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334456777778888888988888888743221111 1125689999999999999999999999999 4
Q ss_pred hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 476 ANPAHV----KGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 476 ~dp~n~----ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
..+++. .+++.+|.+|..+|+|++|+..|++|+++.+
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455532 7999999999999999999999999998864
No 214
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.63 E-value=2.1e-07 Score=95.17 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=90.5
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|++.+|+..|.+|++.+..... . ......+++++|.||..+|+|++|+.++.+|++
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-Y-------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-T-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-c-------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888999999999999999999999997655321 1 122367899999999999999999999999998
Q ss_pred hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 476 ~dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+.+.. ..+++++|.+|..+|++++|+..|++|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 86543 358999999999999999999999999995
No 215
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=2e-08 Score=106.55 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=89.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+++.|+|++|+..|++|++ ++|.+ ..+++|+|.+|..+++|++|+.++++|++++
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55677899999999999999999999999 67766 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008788 478 PAHVKGLYRRGMA--YMALGEFEEAQRDFE-----------MMMKVDKSS 514 (553)
Q Consensus 478 p~n~ka~~r~g~a--~~~lg~~~~A~~~l~-----------~al~l~P~~ 514 (553)
|++..+++.++.+ +..+++|++|++.++ +++.++|+.
T Consensus 105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999 888999999999999 888888753
No 216
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=3.5e-07 Score=75.36 Aligned_cols=97 Identities=10% Similarity=0.113 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...++++|.+++..++|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..++++++++|++ ..+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999987 44555555554
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 008788 527 KQRRKLKVRLENSLKGCLT 545 (553)
Q Consensus 527 ~~~~~~~~~~~~~~~~mf~ 545 (553)
....... +....|.+...
T Consensus 83 ~~~~~~~-~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFE-EAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHH-HHHHHHHHHHT
T ss_pred HHHhhHH-HHHHHHHHHHH
Confidence 4333222 22334444443
No 217
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=1.3e-07 Score=86.66 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=90.6
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|.+|+..+..... ......+++++|.++..+|++++|+.++.+++++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999997665432 1123678999999999999999999999999998
Q ss_pred ---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 477 ---NP----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 477 ---dp----~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
.+ ....+++.+|.++..+|++++|+..|++++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33 346789999999999999999999999999874
No 218
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=3.6e-07 Score=77.30 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALS 523 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~---ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~--~~~~~~l~ 523 (553)
.++++|.+++..++|.+|+..+.++++.+|++. .+++.+|.++..+|+|++|+..|+++++++|++. ..+...+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467899999999999999999999999999998 8999999999999999999999999999999873 23444444
Q ss_pred HHHH
Q 008788 524 KLKK 527 (553)
Q Consensus 524 ~l~~ 527 (553)
.+..
T Consensus 84 ~~~~ 87 (129)
T 2xev_A 84 LSQY 87 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 219
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.61 E-value=3.5e-07 Score=98.92 Aligned_cols=112 Identities=18% Similarity=0.111 Sum_probs=89.6
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+++.|++++|+..|+++++ ..|.+ ..++++++.+|.+.|++++|+..++++++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSST----MDPQF-----------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34455678888888999999999999887 55555 5578888888888889999999888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
|.+..+++.+|.+|...|++++|++.|+++++++|.+ ..+...+..+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~ 484 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVV 484 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence 8888888888888888899999999998888888886 3344444433
No 220
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.61 E-value=3.3e-07 Score=90.93 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHH
Q 008788 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYM 492 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k-a~~r~g~a~~ 492 (553)
+++|+..|++|+.. +.|.+ ..+|.++|.++.+++++++|+..++++++++|.++. +|+.+|.++.
T Consensus 80 ~~~A~~~~~rAl~~---~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 145 (308)
T 2ond_A 80 SDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 145 (308)
T ss_dssp HHHHHHHHHHHHTT---TTTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence 38999999999983 25555 568888888888899999999999999999888886 8888898888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 008788 493 ALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 493 ~lg~~~~A~~~l~~al~l~P~~ 514 (553)
.+|++++|+..|++|++++|.+
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTCC
T ss_pred HhcCHHHHHHHHHHHHhcCCCC
Confidence 8889999999999998888875
No 221
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=2.6e-07 Score=78.14 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...++++|.+++..++|++|+..++++++.+|.+..+++.+|.++..++++++|+..|+++++++|++ ..+...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999986 44555555554
Q ss_pred HHH
Q 008788 527 KQR 529 (553)
Q Consensus 527 ~~~ 529 (553)
...
T Consensus 95 ~~~ 97 (133)
T 2lni_A 95 EAM 97 (133)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 222
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.59 E-value=1.6e-07 Score=92.02 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=91.8
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|++++|+..|.+|+.........+ ......++.++|.++..++++++|+.++.++++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3456677899999999999999999999999654431111 112367899999999999999999999999998
Q ss_pred hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 476 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 476 ~d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+. |....+++.+|.++..+|++++|+..|++++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 84 667889999999999999999999999999998
No 223
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=8.5e-08 Score=94.17 Aligned_cols=130 Identities=12% Similarity=0.113 Sum_probs=97.7
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+++.|+|++|+..|++|++ ++|.+ ..+++++|.++..+|+|++|+.++.++++++
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALE----LDGQS-----------VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45577899999999999999999999999 77776 6789999999999999999999999999999
Q ss_pred CCCH-------HHHHHHHH----------------------HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 478 PAHV-------KGLYRRGM----------------------AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 478 p~n~-------ka~~r~g~----------------------a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
|++. ...++++. ..+..|++++|++.|++|++++|++ ..++..+..+...
T Consensus 103 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~ 181 (281)
T 2c2l_A 103 KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD-GHIRAQQACIEAK 181 (281)
T ss_dssp HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCH-HHHTHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch-hhhhhHHHHHHHH
Confidence 8652 11111111 1124688999999999999999986 3455555555444
Q ss_pred HHHHHHHHHHHHHhh
Q 008788 529 RRKLKVRLENSLKGC 543 (553)
Q Consensus 529 ~~~~~~~~~~~~~~m 543 (553)
.....++....|.+.
T Consensus 182 ~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 182 HDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhh
Confidence 444444455555544
No 224
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.58 E-value=2.7e-07 Score=90.85 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=91.9
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA- 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 476 (553)
+..+...|..++..|+|++|+..|++|++ ..|.+. .....++.++|.++..++++++|+.++.+++.+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCcccH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999 455542 223568999999999999999999999999988
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 477 -----dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5566889999999999999999999999999998654
No 225
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.57 E-value=5.5e-07 Score=97.39 Aligned_cols=114 Identities=17% Similarity=0.083 Sum_probs=98.8
Q ss_pred HHHHhhhccccccCC----------HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHH
Q 008788 399 EKIRVTGNRLFKEGK----------FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKS 466 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~----------~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A 466 (553)
..+..++..+.+.++ +++|+..|.+|+. .+|.+ ..+|++++.++.+++ +|+++
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----~~pK~-----------y~aW~hR~w~l~~l~~~~~~~e 128 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARE 128 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcccccHHHH
Confidence 345556666666666 9999999999998 78877 679999999999999 77999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 467 IEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 467 ~~~~~~al~~dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
+..|++++++||.|..||+.|+.++..++ .+++|++++.++++++|+|. .++.....+...
T Consensus 129 l~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~-saW~~r~~ll~~ 190 (567)
T 1dce_A 129 LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-SSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHh
Confidence 99999999999999999999999999999 99999999999999999985 466666655544
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.56 E-value=6.5e-07 Score=72.14 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
..++..+|.+++..++ ..+|...+.+||++||++++|++.+|.+++..|+|++|+..++++++.+|.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5678889999876665 799999999999999999999999999999999999999999999999998
No 227
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.5e-07 Score=86.81 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=81.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+++.|+|++|+..|++|+. ..|.+ ..+++++|.|+..+++|++|+.++.++++++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLK----IDKNN-----------VKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 46778899999999999999999999999 56665 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 008788 478 PAHVKGLYRRGMAYMALGEFEEAQ-RDFEMMMK 509 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~~~~A~-~~l~~al~ 509 (553)
|++..++..++.++..+++++++. ..|.+.+.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998887 44554443
No 228
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.54 E-value=5.7e-07 Score=89.21 Aligned_cols=108 Identities=7% Similarity=-0.077 Sum_probs=70.0
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHV 481 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~dp~n~ 481 (553)
..|+.+.+.|++++|+..|++|++ ..|.. ..++...+.+..+ ++++++|+..++++++.+|+++
T Consensus 139 ~~~~~~~~~~~~~~A~~~~~~a~~----~~p~~-----------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~ 203 (308)
T 2ond_A 139 QYMKFARRAEGIKSGRMIFKKARE----DARTR-----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 203 (308)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHT----STTCC-----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 344444444555555555555555 33322 2344444444333 6888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHH
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV---DKSSEPDATAALSKL 525 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l---~P~~~~~~~~~l~~l 525 (553)
.+|..++..+..+|++++|+..|++|++. +|++...++..+..+
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888888885 554223454443333
No 229
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.54 E-value=3.3e-07 Score=93.64 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...+..+...|..++..|++..|+..|.+|++.+...... ......+++++|.||..+++|++|+.++.+|+
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456677778888888888888888888888865442211 11236789999999999999999999999999
Q ss_pred hhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Q 008788 475 DANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-----VDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 475 ~~dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~-----l~P~~~~~~~~~l~~l~~~ 528 (553)
++.+ ....+++++|.+|..+|++++|+..|++|++ .+|.. ..+...+..+..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~ 273 (378)
T 3q15_A 210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCK 273 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHH
Confidence 8742 2356899999999999999999999999999 56654 3444444444433
No 230
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.53 E-value=3.9e-07 Score=92.85 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=92.1
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA- 476 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~- 476 (553)
+..+...|..++..|+|.+|+..|+++++ ..|.+. .....+++++|.++..+++|++|+.++.+++.+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCcccH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999 456552 223578999999999999999999999999988
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 477 -----dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.|..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 4566889999999999999999999999999998764
No 231
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=5.4e-07 Score=97.48 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=104.3
Q ss_pred HHHHhhhccccccCCH-HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC----------HHHHH
Q 008788 399 EKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------CRKSI 467 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~-~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~----------~~~A~ 467 (553)
.........+.+.++| ++|+..|.++|. .+|.+ ..+|++++.++.++++ +++++
T Consensus 29 ~~~~~~~~~~~~~~~~~eeal~~~~~~l~----~nP~~-----------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL 93 (567)
T 1dce_A 29 QSATQAVFQKRQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAEL 93 (567)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHhcccccchhhhhhhHHHHH
Confidence 3333444444455555 578999999999 78887 6799999999999998 99999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008788 468 EACNKVLDANPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCLT 545 (553)
Q Consensus 468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg--~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~ 545 (553)
..++++++.+|.+..||+.|+-++.+++ +|++|++.+.+++++||.|. .++..-.-+-.......+++-..+.++..
T Consensus 94 ~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~-~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-HCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc-cHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999 77999999999999999985 46655554444433122344555555554
Q ss_pred cccC
Q 008788 546 RSLG 549 (553)
Q Consensus 546 ~~~~ 549 (553)
..+.
T Consensus 173 ~~p~ 176 (567)
T 1dce_A 173 RNFS 176 (567)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 4443
No 232
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=4.4e-07 Score=88.39 Aligned_cols=109 Identities=12% Similarity=0.016 Sum_probs=88.4
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-- 477 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-- 477 (553)
.....|..+++.++|.+|+..|++++. . +.+ .+...+++++|.++..+|++.+|+.++.+++...
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~----~-~d~--------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~ 203 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGK----W-PDK--------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG 203 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGG----C-SCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc----c-CCc--------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence 556777888888888888888876655 1 111 0124589999999999999999999999999654
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 478 PA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 478 p~-n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
|. ...++|++|.|+.++|+.++|+..|++++.++|+ ..+...|.
T Consensus 204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~ 248 (282)
T 4f3v_A 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALK 248 (282)
T ss_dssp TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence 55 6679999999999999999999999999999998 45666654
No 233
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=1.3e-06 Score=73.21 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
...+.++|.+++..++|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999987 44555555444
Q ss_pred HH
Q 008788 527 KQ 528 (553)
Q Consensus 527 ~~ 528 (553)
..
T Consensus 91 ~~ 92 (131)
T 2vyi_A 91 SS 92 (131)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 234
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=9.3e-07 Score=87.71 Aligned_cols=110 Identities=8% Similarity=-0.086 Sum_probs=83.4
Q ss_pred HHHHHhhhccccccC--CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHH----HHc---CCHHHHHH
Q 008788 398 AEKIRVTGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKL---GECRKSIE 468 (553)
Q Consensus 398 a~~~k~~G~~~~~~g--~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~----~kl---~~~~~A~~ 468 (553)
...+..+|..+...+ ++.+|+..+.++|. .+|.+ ..++++++.++ .++ +++.+++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~-----------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKN-----------YQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTC-----------CHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCccc-----------HHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 344566777777777 89999999999988 67766 45777777777 566 67888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFE--EAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 469 ~~~~al~~dp~n~ka~~r~g~a~~~lg~~~--~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
.|+++|+.+|.|..||+.|+.++..++.++ ++++.+.++++++|.|.. ++....
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s-AW~~R~ 187 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS-AWSHRF 187 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH-HHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 888888888888888888888888888877 888888888888887743 444333
No 235
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=1.5e-06 Score=84.14 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008788 447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~ 511 (553)
..+++++|.+|.. .+++++|+.++.++++.+ ++.+++.+|.+|.. .+++++|+.+|++|++++
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 3455666666666 666666666666666553 56666666666666 666666666666666654
No 236
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=9.2e-07 Score=76.34 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~ 523 (553)
...++++|.+++..++|.+|+..++++++++|++ ..+++.+|.++..+++|++|+..|+++++++|++ ..+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHHH
Confidence 5788999999999999999999999999999988 9999999999999999999999999999999987 44555555
Q ss_pred HHHHHH
Q 008788 524 KLKKQR 529 (553)
Q Consensus 524 ~l~~~~ 529 (553)
.+....
T Consensus 107 ~~~~~~ 112 (148)
T 2dba_A 107 QALEKL 112 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 554443
No 237
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.49 E-value=4.1e-07 Score=95.37 Aligned_cols=117 Identities=11% Similarity=0.045 Sum_probs=92.6
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLD 475 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~ 475 (553)
+..+.+.|..++..|+|++|+..|++|++......... ......++.++|.++++++ +|++|+.++.+|++
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY-------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 34456788899999999999999999998655432211 0112567888888887765 69999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788 476 ANPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (553)
Q Consensus 476 ~dp~n~ka~~r~g~a~~~---lg~~~~A~~~l~~al~l~P~~~~~~~~~l 522 (553)
++|+++.+++.++.++.. .+++++|++.|++|++++|++. .+...+
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~-~~~~~l 215 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ-YLKVLL 215 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH-HHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch-HHHHHH
Confidence 999999999999988655 5778899999999999999973 454444
No 238
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.49 E-value=7.7e-07 Score=88.30 Aligned_cols=122 Identities=11% Similarity=-0.036 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
.++|+..+.++|. ++|.+ ..++++++.++..++ .+++++..++.+|..+|.+..+|+.|+.++
T Consensus 49 s~~aL~~t~~~L~----~nP~~-----------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 49 SERALHITELGIN----ELASH-----------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp SHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----HCcHH-----------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 3689999999999 88888 789999999999999 999999999999999999999999999999
Q ss_pred ----HHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccccCCC
Q 008788 492 ----MAL---GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK-VRLENSLKGCLTRSLGKF 551 (553)
Q Consensus 492 ----~~l---g~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~mf~~~~~~~ 551 (553)
..+ ++++++++.+.++++++|.|. .++..-.-+-.++.... ..+-..+.+++...+.+|
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny-~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~ 180 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPKNH-HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN 180 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH
Confidence 778 899999999999999999984 46655554444433221 245556666665555443
No 239
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.48 E-value=5.3e-07 Score=92.29 Aligned_cols=92 Identities=11% Similarity=0.063 Sum_probs=84.1
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+.+.|..+++.++|++|+..|++|++ ++|.+ ..+++++|.||..+++|++|+.++++|+++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 355677899999999999999999999999 67766 678999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFEEAQRD 503 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~~A~~~ 503 (553)
+|++..++..++.++..++++++|.+.
T Consensus 337 ~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 337 APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888754
No 240
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=1.6e-06 Score=71.88 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
..+++++|.++...+++++|+..+.+++..+|.+..+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999986 34544444443
Q ss_pred H
Q 008788 527 K 527 (553)
Q Consensus 527 ~ 527 (553)
.
T Consensus 88 ~ 88 (125)
T 1na0_A 88 Y 88 (125)
T ss_dssp H
T ss_pred H
Confidence 3
No 241
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.47 E-value=5.7e-07 Score=91.61 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=90.3
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|++|+........ ......++.++|.++..++++++|+.++.+++.+
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3456778899999999999999999999996554221 1123568899999999999999999999999988
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+.. ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 7765 788999999999999999999999999988554
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.47 E-value=1.9e-06 Score=72.61 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHH
Q 008788 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK---SIEACNKVLDAN-P-AHVKGLYRRG 488 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~---A~~~~~~al~~d-p-~n~ka~~r~g 488 (553)
...+...|.+++. ..+.. ..+.+|+|.|+.+.....+ ++..+...++.+ | .+-.++|.+|
T Consensus 17 l~~~~~~y~~e~~----~~~~s-----------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LA 81 (126)
T 1nzn_A 17 LLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 81 (126)
T ss_dssp HHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4556677777765 23322 5688999999999887766 999999999887 5 6788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 489 MAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 489 ~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
.+++++|+|+.|++.++.+|+.+|+| ..+..+...++.++
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n-~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence 99999999999999999999999998 44666555555544
No 243
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.46 E-value=1.9e-06 Score=86.66 Aligned_cols=125 Identities=15% Similarity=-0.015 Sum_probs=102.2
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYRRGM 489 (553)
Q Consensus 411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~dp~n~ka~~r~g~ 489 (553)
.....+|+..+.++|. .+|.+ ..++++++.++..++ .+++++..++++|..+|.|..+|+.|+.
T Consensus 67 ~e~se~AL~lt~~~L~----~nP~~-----------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 67 EEKSERALELTEIIVR----MNPAH-----------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp TCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3455789999999999 78887 679999999999999 5999999999999999999999999999
Q ss_pred HHHHc-C-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcccccCCC
Q 008788 490 AYMAL-G-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLK-------VRLENSLKGCLTRSLGKF 551 (553)
Q Consensus 490 a~~~l-g-~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~~mf~~~~~~~ 551 (553)
++..+ + +++++++.+.++++++|.|. .++....-+-.+..... .++-..+.++....+.+|
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy-~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNY-HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN 201 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCH-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence 99998 8 99999999999999999985 46655555544444333 356666666666555544
No 244
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.45 E-value=1.5e-06 Score=71.56 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~ 519 (553)
..-++.+|..+++.++|..|+..+..|++.. +..+..++.+|.|+.++|+++.|+..+++|++++|++. .+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ-RAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHH
Confidence 4457899999999999999999999999863 35678899999999999999999999999999999984 454
Q ss_pred HHHHHHHHHH
Q 008788 520 AALSKLKKQR 529 (553)
Q Consensus 520 ~~l~~l~~~~ 529 (553)
..+..++..+
T Consensus 84 ~n~~~~~~~~ 93 (104)
T 2v5f_A 84 GNLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 4454444433
No 245
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.45 E-value=5.5e-07 Score=75.43 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=68.0
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|+|++|+..|++|++ ..|.+ ..+++++|.|+.++|++++|+..+.++++
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNH-----------QALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999 67776 67899999999999999999999999999
Q ss_pred hCCCCHHHHH
Q 008788 476 ANPAHVKGLY 485 (553)
Q Consensus 476 ~dp~n~ka~~ 485 (553)
.+|+++....
T Consensus 90 ~~p~~~~~~~ 99 (117)
T 3k9i_A 90 ETSDDETIQS 99 (117)
T ss_dssp HHCCCHHHHH
T ss_pred hCCCcHHHHH
Confidence 9999987654
No 246
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.42 E-value=1.4e-06 Score=71.75 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=69.4
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+|+.++|..|+..|++|++....-... ......++.++|.|+.++|+++.|+.+++++++++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4566789999999999999999999999965422110 11235789999999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 008788 478 PAHVKGLYRRG 488 (553)
Q Consensus 478 p~n~ka~~r~g 488 (553)
|++..++.+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 99999988776
No 247
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=1.8e-06 Score=86.39 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=55.1
Q ss_pred ccccCCHH-HHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhh
Q 008788 408 LFKEGKFE-LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------CRKSIEACNKVLDA 476 (553)
Q Consensus 408 ~~~~g~~~-~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~----------~~~A~~~~~~al~~ 476 (553)
..+.|+|. +|+..+.++|. .+|.+ ..+++.++.+...++. +.+++..++.+|..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~----~nP~~-----------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 34567776 79999999998 77776 3445555555444443 45555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCC
Q 008788 477 NPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg--~~~~A~~~l~~al~l~P~~ 514 (553)
+|.|..+|+.|+.++..++ .++++++.+.++++++|.|
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN 143 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN 143 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence 5555555555555555555 2555555555555555554
No 248
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=5.7e-06 Score=82.69 Aligned_cols=100 Identities=19% Similarity=0.114 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--CRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~--~~~A~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
+.+++..+.+++. .+|.+ ..++++++.++.+++. |.+++..|+++|+.||.|..||+.|+.++
T Consensus 90 l~~EL~~~~~~L~----~~PKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 90 VKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154 (331)
T ss_dssp HHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6788888888887 78877 6799999999999994 99999999999999999999999999999
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 492 MALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 492 ~~lg~-~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
..++. ++++++++.++++++|+|.. ++.....+-..+
T Consensus 155 ~~l~~~~~eel~~~~~~I~~~p~N~S-AW~~R~~ll~~l 192 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITRNFSNYS-SWHYRSCLLPQL 192 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHh
Confidence 99998 69999999999999999864 666555554444
No 249
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.40 E-value=1.1e-06 Score=79.47 Aligned_cols=107 Identities=15% Similarity=0.070 Sum_probs=83.4
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhH------------------HH------HHhhhhhHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE------------------GK------VFVGKRNLLHLNV 453 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee------------------~~------~~~~~~~~~~~nl 453 (553)
+..+...|..++..|++++|+..|++++. ..| +..- .. ........+++++
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l 114 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPL----EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL 114 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence 45566777788888888888888877655 222 1100 00 0111125689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n--~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
|.++..+|++++|+..+.++++.+|++ ..+++.+|.++..+|++++|+..|++++.
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999999976 66999999999999999999999999875
No 250
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.39 E-value=1.3e-06 Score=85.78 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=91.8
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|++++|+..|+++++....... ......++.++|.++..++++++|+..+.+++.+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999986544221 1123568999999999999999999999999998
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 477 dp~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.+.. ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 7665 789999999999999999999999999998654
No 251
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.38 E-value=2.6e-06 Score=87.35 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=86.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|+|++|+..|++|++....... ......++.++|.+|+.++++++|+.++.+++.+.
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 346677899999999999999999999996544211 11224578899999999999999999999999887
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 478 PAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 478 p~n------~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
+.. ..+++.+|.++..+|++++|+..|++++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 644 678889999999999999999999999887543
No 252
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=1.7e-06 Score=72.53 Aligned_cols=68 Identities=12% Similarity=0.269 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
...++++|.++...++|.+|+..+.+++..+|.++.+++.+|.++..+|+|++|+..|+++++++|++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 46789999999999999999999999999999999999999999999999999999999999998754
No 253
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=1.9e-06 Score=78.78 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=89.6
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...|..++..|++++|+..|.+|+..+.... .+ ......+++++|.++..+|++++|+.++.++++
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP-ED-------PLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-cc-------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466778899999999999999999999999766432 12 112357899999999999999999999999997
Q ss_pred hCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 476 ANP--AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 476 ~dp--~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
+.+ .+ ..++..+|.++..+|++++|+..|++++++..
T Consensus 136 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 632 22 34578999999999999999999999998743
No 254
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.37 E-value=8.2e-07 Score=87.33 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=85.0
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCCh-----------------hHHH------HHhhhhhHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-----------------EEGK------VFVGKRNLLHLNVA 454 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~-----------------ee~~------~~~~~~~~~~~nla 454 (553)
+..+...|..+...|++++|+..|++++. ..|... +... ........+++++|
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la 226 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA 226 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence 55667778888888888888888877655 222110 0000 01112256899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 455 ACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~al~~dp~n--~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
.+++.+|++++|+..+.++++.+|++ ..++.+++.++..+|+.++|...|++++.
T Consensus 227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999998 99999999999999999999999999875
No 255
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.36 E-value=6.2e-06 Score=79.68 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008788 448 LLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 448 ~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P 512 (553)
.+++++|.+|.. .+++++|+.++.++++. .++.+++.+|.+|.. .+++++|+.+|+++++++|
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 456666666666 66677777777776665 356666777777776 6777777777777766654
No 256
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.35 E-value=3.2e-06 Score=78.98 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=82.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhh--------c--cCC---CChhHH-----HHHhhhhhHHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN--------H--VNP---QDDEEG-----KVFVGKRNLLHLNVAACLLK 459 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~--------~--~~~---~~~ee~-----~~~~~~~~~~~~nla~~~~k 459 (553)
+..+...|..++..+++++|+..|++|++.-. . ... .+.++. +....-...+++|+|.+|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 44555666666667777777777777655200 0 010 011110 11222235678889999887
Q ss_pred ----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 460 ----LGECRKSIEACNKVLDANP--AHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 460 ----l~~~~~A~~~~~~al~~dp--~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
.+++.+|+.++.++++..+ .++.+++.+|.+|.. .+++++|+.+|++|+++ |.+ ..+...|..+
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-~~a~~~Lg~~ 171 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-GYAEYWAGMM 171 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-THHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-HHHHHHHHHH
Confidence 7889999999999998887 358899999999998 88899999999999888 333 2344444433
No 257
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.32 E-value=3.4e-06 Score=78.81 Aligned_cols=110 Identities=10% Similarity=-0.011 Sum_probs=84.7
Q ss_pred HHHhhhccccc----cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008788 400 KIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACN 471 (553)
Q Consensus 400 ~~k~~G~~~~~----~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~ 471 (553)
.+...|..++. .+++.+|+..|++|++ ..+.+ ....+++|+|.+|.. .+++.+|+.++.
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAAR----DSESD---------AAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTSH---------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCCc---------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 44556666665 6677777777777766 32210 115789999999999 889999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008788 472 KVLDANPAHVKGLYRRGMAYMAL-G-----EFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (553)
Q Consensus 472 ~al~~dp~n~ka~~r~g~a~~~l-g-----~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~ 526 (553)
++++. +.++.+++.+|.+|... + ++++|+.+|++|++.... .+...|..++
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~---~A~~~l~~l~ 210 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD---TGCEEFDRIS 210 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH---HHHHHHHHHH
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHhh
Confidence 99999 77888999999999875 3 899999999999998643 4566665554
No 258
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.30 E-value=1.7e-06 Score=70.43 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=65.5
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..+++.|+|++|+..|++|++ .+|.+ ..+|+++|.||.+++++++|+..+.+++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE----TDPDY-----------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45677899999999999999999999999 67766 5689999999999999999999999999987
Q ss_pred CC--CHHHHHHHHHHHH
Q 008788 478 PA--HVKGLYRRGMAYM 492 (553)
Q Consensus 478 p~--n~ka~~r~g~a~~ 492 (553)
|. +..+...+..++.
T Consensus 72 ~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 72 REEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHH
Confidence 63 3333333333333
No 259
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=2.5e-06 Score=85.67 Aligned_cols=110 Identities=13% Similarity=-0.015 Sum_probs=95.1
Q ss_pred HHHhhhccccccC-CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhh
Q 008788 400 KIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-G-ECRKSIEACNKVLDA 476 (553)
Q Consensus 400 ~~k~~G~~~~~~g-~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-~-~~~~A~~~~~~al~~ 476 (553)
.+..++..+...+ .+++|+..+.++|. .+|.+ ..+++.++.|+.++ + ++.+++..|+++|+.
T Consensus 90 aWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nPKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~ 154 (349)
T 3q7a_A 90 VWQYRFSLLTSLNKSLEDELRLMNEFAV----QNLKS-----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP 154 (349)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence 4556666666667 59999999999998 78887 67999999999998 7 899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 477 NPAHVKGLYRRGMAYMALGEFE--------EAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 477 dp~n~ka~~r~g~a~~~lg~~~--------~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
+|.|..||+.|+.++..++.++ ++++.+.++++++|.|.. ++.....+
T Consensus 155 dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S-AW~~R~~l 210 (349)
T 3q7a_A 155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS-AWGWRWYL 210 (349)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 9999999999999999999888 999999999999999854 55544444
No 260
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.25 E-value=3e-06 Score=74.87 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=59.3
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF----------EEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 459 kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~----------~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
++++|++|+..+.++++++|+++.+|+++|.++..++++ ++|+..|++|++++|++ .++...+-.+-..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999875 59999999999999997 4555555554443
No 261
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.18 E-value=2.2e-05 Score=67.98 Aligned_cols=90 Identities=11% Similarity=-0.009 Sum_probs=80.0
Q ss_pred hhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Q 008788 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 404 ~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~ 479 (553)
.|..++..+.+.+|+..|++|++ . .+ ..+++|+|.+|.. .+++.+|+.++.+|.+. .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~----~--g~-----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g 91 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE----L--NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N 91 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc----C--CC-----------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence 66777777888999999999988 2 22 5789999999999 89999999999999987 6
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008788 480 HVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 480 n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P 512 (553)
++.|++++|.+|.. .+++++|+.+|++|.++..
T Consensus 92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 89999999999999 9999999999999999853
No 262
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=5.3e-06 Score=68.85 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=65.9
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+..+...|..++..|+|++|+..|++|+. ..|.+ ..+++++|.|+..+|++++|+..+.++++++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALD----FDPTY-----------SVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999 66765 5689999999999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHH
Q 008788 478 PA--HVKGLYRRGMAYMA 493 (553)
Q Consensus 478 p~--n~ka~~r~g~a~~~ 493 (553)
|. +..++..+..++..
T Consensus 84 ~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 84 QSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH
Confidence 74 34444444443333
No 263
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.13 E-value=4.5e-06 Score=81.22 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=77.4
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PA 479 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~ 479 (553)
....+..+...|+|++|...|..++. ..|.+ . .++++|.++++.++|.+|+.++..++... |.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~-----------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV----AGSEH-----------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHH-----------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh----cCCch-----------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 34567777888899999998887655 34422 4 78999999999999999999999887763 22
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 480 H-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 480 n-~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
+ ..++|.+|.++..+|++++|+.+|++++.-.
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 1 4589999999999999999999999998654
No 264
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.12 E-value=2e-05 Score=79.78 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=74.9
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..+...|..++..|+|++|+..|.+|+........ ......+++++|.++..+|+|.+|+.++.+++++
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445667777788888888888888888875443211 0112445677778888888888888888877766
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 477 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 477 d--------p~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
. |....+++.+|.++..+|++++|+..+++++.+.|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 4 234556677777888888888888888888777664
No 265
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.10 E-value=7.3e-06 Score=86.72 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=90.0
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
...+..+.+.|..+..+|+|++|+..|++||......- +.+. .....++|+|..|..+|+|++|+.++.+|
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp--------~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA--------QLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34577788899999999999999999999999776543 3332 23678999999999999999999999999
Q ss_pred HhhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 474 LDAN-----PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 474 l~~d-----p~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|++- |++ .+.+-.++.++..++.|++|...|+++.+.
T Consensus 420 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 420 YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9773 444 556778899999999999999999998654
No 266
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.08 E-value=5.2e-05 Score=80.97 Aligned_cols=114 Identities=9% Similarity=0.059 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCC
Q 008788 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-------LGECR-------KSIEACNKVLD-ANPA 479 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-------l~~~~-------~A~~~~~~al~-~dp~ 479 (553)
.+|+..|++|+. ..|.+ ..+|+++|..+.+ +|++. +|+..+.+|++ ++|+
T Consensus 255 ~~a~~~y~~al~----~~p~~-----------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 255 KRVMFAYEQCLL----VLGHH-----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHHHHHHHHHH----HHTTC-----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 478889999998 45655 5688999988886 78877 89999999997 8999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKVRLENSLKGCL 544 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~mf 544 (553)
+..+|+.+|.++..+|++++|+..|+++++++|.+...++..+..+..+... ..+.++.|.+..
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al 383 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAR 383 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999998632344444443332222 223344554443
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.05 E-value=4e-05 Score=64.65 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~dp-~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l 522 (553)
..+.+|+|.|+.+... ..+++..+...++.+| ..-..+|.+|.++.++|+|+.|+++...+|+.+|+|. .+..+.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~-QA~~Lk 118 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK-QVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH-HHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH-HHHHHH
Confidence 5678999999999875 4579999999999888 4578999999999999999999999999999999984 465555
Q ss_pred HHHHHHHH
Q 008788 523 SKLKKQRR 530 (553)
Q Consensus 523 ~~l~~~~~ 530 (553)
..++.+++
T Consensus 119 ~~Ie~ki~ 126 (134)
T 3o48_A 119 SMVEDKIQ 126 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 268
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.05 E-value=3.1e-05 Score=78.28 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=88.3
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
..+...|..++..|+|.+|+..|++++.......... ......++.++|.++..+|++++|+.++.+++.+.+
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 3356788889999999999999999999655432210 011256788999999999999999999999999876
Q ss_pred C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 479 A-----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 479 ~-----n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
. ...+++.+|.++...|++++|+..+++++.+.+
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4 356899999999999999999999999998843
No 269
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.03 E-value=2.6e-05 Score=82.54 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---Ch
Q 008788 447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS---SE 515 (553)
Q Consensus 447 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l~P~---~~ 515 (553)
..+++++|.+|.. .+++++|+.++++|++. .++.+++++|.+|.. .+++++|+.+|++|++++|+ +
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~- 439 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT- 439 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH-
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC-
Confidence 5689999999999 89999999999999986 479999999999999 89999999999999999954 3
Q ss_pred HHHHHHHHHH
Q 008788 516 PDATAALSKL 525 (553)
Q Consensus 516 ~~~~~~l~~l 525 (553)
..+...|..+
T Consensus 440 ~~a~~~l~~~ 449 (490)
T 2xm6_A 440 ENRNITEKKL 449 (490)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhc
Confidence 3444444443
No 270
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.01 E-value=2.6e-05 Score=83.31 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=78.7
Q ss_pred HHHHhhhccccc-------cCCHH-------HHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH
Q 008788 399 EKIRVTGNRLFK-------EGKFE-------LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464 (553)
Q Consensus 399 ~~~k~~G~~~~~-------~g~~~-------~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~ 464 (553)
..+...|..+.+ .|+++ +|+..|++|++. ..|.+ ..++++++..+.++|+++
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~---~~p~~-----------~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT---TCSSC-----------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHH
Confidence 345566666664 68887 899999999862 24554 567888888888888888
Q ss_pred HHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 465 KSIEACNKVLDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 465 ~A~~~~~~al~~dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+|+..++++++++|.++ .+|...+.++.++|++++|++.|++|++..|.+
T Consensus 339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 88888888888888875 588888888888888888888888888877654
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.98 E-value=6.8e-05 Score=64.10 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~dp-~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l 522 (553)
..+.+|+|.|+.+... -.+++..+...++.+| ..-..+|.+|.+++++|+|++|+++.+.+|+.+|+|. .+..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~-QA~~Lk 117 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK-QVGALK 117 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH-HHHHHH
Confidence 5678999999999875 4579999999999888 5678999999999999999999999999999999984 455544
Q ss_pred HHHHHHH
Q 008788 523 SKLKKQR 529 (553)
Q Consensus 523 ~~l~~~~ 529 (553)
..++.++
T Consensus 118 ~~Ie~~i 124 (144)
T 1y8m_A 118 SMVEDKI 124 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 272
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.96 E-value=7.3e-05 Score=75.07 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=81.7
Q ss_pred HHhhhccccc---cCCHHHHHHHHHHHHHHhhccCCCChhHH---------------------HH------------Hhh
Q 008788 401 IRVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEG---------------------KV------------FVG 444 (553)
Q Consensus 401 ~k~~G~~~~~---~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~---------------------~~------------~~~ 444 (553)
+.-+|..++. ...+.+|+.+|++|++ ++|....-. .. ...
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~----lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQ----SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 3344444443 3456899999999998 566542110 00 011
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
....+|.-+|.+++..|++++|+..+++|+.++| +.-+|..+|.++...|++++|++.|.+|+.++|..
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1223555677778888999999999999999997 57888999999999999999999999999999984
No 273
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.86 E-value=6.8e-05 Score=72.42 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHH
Q 008788 413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----GECRKSIEACNKVLDANPAH-VKGLYR 486 (553)
Q Consensus 413 ~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl-----~~~~~A~~~~~~al~~dp~n-~ka~~r 486 (553)
....|....++|++ ++|.. +...+|.-+|..|.+. |+.++|..++++||+++|+. ..+++.
T Consensus 178 ~l~~A~a~lerAle----LDP~~---------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~ 244 (301)
T 3u64_A 178 TVHAAVMMLERACD----LWPSY---------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT 244 (301)
T ss_dssp HHHHHHHHHHHHHH----HCTTH---------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH
T ss_pred hHHHHHHHHHHHHH----hCCCc---------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 34555555666666 45532 1256899999999996 99999999999999999975 999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 008788 487 RGMAYMAL-GEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 487 ~g~a~~~l-g~~~~A~~~l~~al~l~P~ 513 (553)
.|..+... +++++|.+.|++|+.++|.
T Consensus 245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 245 YADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999885 9999999999999999886
No 274
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.78 E-value=0.00012 Score=84.46 Aligned_cols=107 Identities=22% Similarity=0.312 Sum_probs=84.2
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP- 478 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp- 478 (553)
.+...|+.++..|+|++|+..|.+|- .|..+|.|+.++|+|++|++.+.+|...++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 45678999999999999999998862 467788888888889999888888855443
Q ss_pred ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 008788 479 ------------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRR 530 (553)
Q Consensus 479 ------------------------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~ 530 (553)
.++..+..++..|...|.|++|+..|+++|.++|.+ ..+..+|..+..+.+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCC
Confidence 245566678888999999999999999999999886 456666666555443
No 275
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=97.74 E-value=5.9e-05 Score=78.20 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=64.6
Q ss_pred CCCCCEEEEEEEEEecCCcEEEeccccCCCCCcceEEEcCCCccchhHHhhcCCCCCCcEEEEEEcCCCccCCCCCCCCC
Q 008788 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (553)
Q Consensus 45 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~p~~~~~G~~~~~~g~~~~l~~m~~G~~~~~~ip~~~a~g~~~~~~~~ 124 (553)
++.||.|+++|+++ .||+.|+++. +.++.+.+|.++ + |+.+|.||++|+.++|.+.. +
T Consensus 155 a~~gD~V~id~~~~-~dG~~~~~~~------~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF---------a--- 212 (433)
T 3gty_X 155 AEAGDLVRVNMEVY-NEEGKKLTSR------EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY---------E--- 212 (433)
T ss_dssp CCTTSEEEEEEEEE-CTTSCEEEEE------EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE---------T---
T ss_pred cCCCCEEEEEEEEE-ECCEECcCCC------CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee---------C---
Confidence 68999999999998 6999999764 367888999887 4 99999999999999999843 1
Q ss_pred CCCCCCCCeEEEEEEEEeeecccc
Q 008788 125 PSTFPKDEELHFEIEMIDFAKAKI 148 (553)
Q Consensus 125 ~~~i~~~~~l~~~v~l~~~~~~~~ 148 (553)
|.+..|.|+|..+.....
T Consensus 213 ------Gk~a~F~VtV~~Ik~~~l 230 (433)
T 3gty_X 213 ------GKKYTYKLEVEEVYKRTL 230 (433)
T ss_dssp ------TEEEEEEEEEEEEEEECC
T ss_pred ------CCeEEEEEEEEEEEEecC
Confidence 789999999999976543
No 276
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.66 E-value=0.00011 Score=64.03 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHHhhhccccccC---CHHHHHHHHHHHHHHhhccC-CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 399 EKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 399 ~~~k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~-~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
+...+.|..+.+.. ++.+|+..+...++ .. |. ....+++|+|..|+++++|.+|+++|+++|
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~----~~~p~----------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLP----KGSKE----------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HSCHH----------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcc----------chHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44556666777666 67788888888777 22 21 125789999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHH
Q 008788 475 DANPAHVKGLYRRGMAY 491 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~ 491 (553)
+++|+|..|..-+-.+-
T Consensus 99 ~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 99 QTEPQNNQAKELERLID 115 (152)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 99999998876655443
No 277
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.64 E-value=0.00022 Score=82.29 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=82.7
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhh-------ccCCCChhHHH-HHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFN-------HVNPQDDEEGK-VFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~-------~~~~~~~ee~~-~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
.+.|..+...|.|++|...|+++-.... .+...+ +..+ .-+-....+|+++|.++..+|+|++|+..|.+|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nld-rAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLD-RAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4568899999999999999998743211 111111 0000 011123578999999999999999999999776
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
+++.+|++.|.++.++|+|++|++.|..|.+.+++.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence 899999999999999999999999999999988663
No 278
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=97.63 E-value=0.00011 Score=76.19 Aligned_cols=74 Identities=9% Similarity=0.081 Sum_probs=62.8
Q ss_pred CCCCCceEEEEEEEEeCCCcEEeecCCCCceEEEcCCCCccchHHHhhccCCcCcEEEEEEeCCccCCCCCCCCCCCCce
Q 008788 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247 (553)
Q Consensus 168 ~~~~gd~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~~~~~~g~~~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~i~~~~~ 247 (553)
.++.||.|+++|+++ .||..|+++. +.++.+.+|++. + |+++|.||++||+..|.+.- ++.+
T Consensus 154 ~a~~gD~V~id~~~~-~dG~~~~~~~-~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-------------aGk~ 215 (433)
T 3gty_X 154 PAEAGDLVRVNMEVY-NEEGKKLTSR-EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-------------EGKK 215 (433)
T ss_dssp CCCTTSEEEEEEEEE-CTTSCEEEEE-EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-------------TTEE
T ss_pred ccCCCCEEEEEEEEE-ECCEECcCCC-CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-------------CCCe
Confidence 467899999999996 6899998754 368888899887 4 99999999999999999832 4789
Q ss_pred EEEEEEEeeeee
Q 008788 248 VHFEVELVHLIQ 259 (553)
Q Consensus 248 l~~~v~l~~~~~ 259 (553)
..|.|+|.++..
T Consensus 216 a~F~VtV~~Ik~ 227 (433)
T 3gty_X 216 YTYKLEVEEVYK 227 (433)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEEE
Confidence 999999999953
No 279
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.59 E-value=0.00016 Score=74.59 Aligned_cols=77 Identities=17% Similarity=0.094 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~ 528 (553)
.|...+.++...++|+.|..+... |. .++.-+..+...|...|+|++|+..|++++.+++.+. .+..+|..+-.+
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~-~~ftel~il~~k 253 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHM-GMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH-HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHh
Confidence 444444444455555555332221 22 2333344566789999999999999999999999874 577777666554
Q ss_pred HH
Q 008788 529 RR 530 (553)
Q Consensus 529 ~~ 530 (553)
.+
T Consensus 254 y~ 255 (449)
T 1b89_A 254 FK 255 (449)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 280
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00047 Score=70.85 Aligned_cols=118 Identities=13% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc------------------CCCChhHH-HH------------Hh
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV------------------NPQDDEEG-KV------------FV 443 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~------------------~~~~~ee~-~~------------~~ 443 (553)
-.....+...|..+++.|+|++|+..|.+++...... .+.+.+.. +. ..
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 3455667788888888888888888888777654322 11121111 00 11
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 444 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
.+...++.++|.+|..+|+|.+|+..+.+++.. .+..+.++...+.+|..+++|++|+..|++++.+.+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 123568899999999999999999999999876 244567899999999999999999999999998743
No 281
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.55 E-value=0.00056 Score=72.09 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=61.3
Q ss_pred HHHHHhhhccccc----cCCHHHHHHHHHHHHHHhh----------ccC----CCChhHH-----HHHhhhhhHHHHHHH
Q 008788 398 AEKIRVTGNRLFK----EGKFELAKAKYEKVLRDFN----------HVN----PQDDEEG-----KVFVGKRNLLHLNVA 454 (553)
Q Consensus 398 a~~~k~~G~~~~~----~g~~~~A~~~Y~~Al~~l~----------~~~----~~~~ee~-----~~~~~~~~~~~~nla 454 (553)
+..+...|..++. .+++.+|+..|++|++.-. ... +.+.++. +........+++++|
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg 118 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLG 118 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455666666666 7888888888888776200 000 1111100 001111234556666
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008788 455 ACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 455 ~~~~k----l~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~l 510 (553)
.+|.. .+++++|+.++.++++. .++.+++.+|.+|.. .+++++|+++|+++++.
T Consensus 119 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 119 VMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 66666 55666666666666553 356666666666665 56666666666666654
No 282
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.55 E-value=0.00063 Score=58.59 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
+++.+|+..|++|.+ .... .++ +|.+|.....+++|+.++.++.+. .++.|++++|.+|
T Consensus 9 ~d~~~A~~~~~~aa~----~g~~-------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACE----LNEM-------------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHH----TTCT-------------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHc----CCCH-------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 578999999999988 3321 123 999999999999999999999987 6899999999999
Q ss_pred HH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008788 492 MA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (553)
Q Consensus 492 ~~----lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~ 527 (553)
.. .+++++|+.+|++|.+.. + ..+...|..+-.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~g--~-~~a~~~Lg~~y~ 104 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGLN--D-QDGCLILGYKQY 104 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHH
T ss_pred HcCCCCCccHHHHHHHHHHHHcCC--C-HHHHHHHHHHHH
Confidence 99 899999999999999873 2 345555554433
No 283
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.54 E-value=0.00037 Score=72.93 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=57.5
Q ss_pred HHhhhccccccC---CHHHHHHHHHHHHHHhhccCCCCh--------------------hH-----HHHHhhhhhHHHHH
Q 008788 401 IRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDD--------------------EE-----GKVFVGKRNLLHLN 452 (553)
Q Consensus 401 ~k~~G~~~~~~g---~~~~A~~~Y~~Al~~l~~~~~~~~--------------------ee-----~~~~~~~~~~~~~n 452 (553)
+...|..+.+.| ++.+|+..|++|++ ..+.+. ++ .+.. .....+++|
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~----~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~ 253 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVS----RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVS 253 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHH
Confidence 456677777788 99999999999987 333321 00 0011 222345555
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 008788 453 VAAC-L--LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-----EFEEAQRDFEMMM 508 (553)
Q Consensus 453 la~~-~--~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg-----~~~~A~~~l~~al 508 (553)
+|.+ + ...+++.+|+.++.++++. .++.|++.+|.+|. .| ++++|+.+|++|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 5555 2 2445566666666665543 35566666666555 33 5666666666655
No 284
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.45 E-value=0.0015 Score=57.34 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--- 477 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d--- 477 (553)
+++....++..+.|+.|+-.+..++...+. +++- .-......++..+|..++..++|.+|...|.+||...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~-----~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPEL-----FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTS-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-Cccc-----ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999998886432 2210 0012235688899999999999999999999998552
Q ss_pred CCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 478 PAH----------------------VKGLYRRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 478 p~n----------------------~ka~~r~g~a~~~lg~~~~A~~~l~~a 507 (553)
+.+ ....|+.|.||..++++++|+..++..
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111 257799999999999999999988754
No 285
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00048 Score=70.78 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=85.8
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d 477 (553)
+......|+.++..|+|.+|+..|++++..+....... ....++++++.+|+.+++|.+|...+++++.+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP---------SLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch---------hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 45566789999999999999999999998765543322 236789999999999999999999999999774
Q ss_pred C---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 478 P---AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 478 p---~n----~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+ +. ...+...|..+...++|++|..+|..+++.
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 22 355677899999999999999999999875
No 286
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.33 E-value=0.0014 Score=68.58 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=46.2
Q ss_pred HHhhhcc-c--cccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 008788 401 IRVTGNR-L--FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-----ECRKSIEACNK 472 (553)
Q Consensus 401 ~k~~G~~-~--~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~-----~~~~A~~~~~~ 472 (553)
+...|.. + ...+++.+|+..|++|++. . + ..+++|+|.+|. .| ++.+|+.++.+
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g--~-----------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA----D--Q-----------PRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----T--C-----------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----C--C-----------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 3444554 2 3577888888888887761 1 1 234445555554 22 45555555555
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 008788 473 VLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMK 509 (553)
Q Consensus 473 al~~dp~n~ka~~r~g~a~~~----lg~~~~A~~~l~~al~ 509 (553)
|. +.++.|++++|.+|.. ..++++|+.+|++|.+
T Consensus 313 Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 313 AV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred Hh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 54 4455555555544444 2245555555554444
No 287
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.33 E-value=0.0038 Score=63.81 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=98.8
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccC-------CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-------PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~-------~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (553)
..+.+...|......++...|...|.+|+..+..-- ++-..+...+.+....+...++.+++.+|++.+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345555666666678899999999999999653210 1112334556677778888899999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHH
Q 008788 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-------VDKSSEPDATAALSKL 525 (553)
Q Consensus 470 ~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~-------l~P~~~~~~~~~l~~l 525 (553)
+..++..+|-+..+|..+-.||...|+..+|++.|+++-+ ++|+ ++.+.....+
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~--~~l~~l~~~i 254 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG--PTLRALNERI 254 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC--HHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHH
Confidence 9999999999999999999999999999999999988754 4786 3455444443
No 288
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.29 E-value=0.0014 Score=64.57 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCH
Q 008788 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA----------NPAHV 481 (553)
Q Consensus 412 g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----------dp~n~ 481 (553)
+++..|...|+++.. ..|... ...+++| |++++|+|++|...++.+++. +|+|+
T Consensus 192 ~~~q~A~~~f~El~~----~~p~~~---------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 192 ETATSNFYYYEELSQ----TFPTWK---------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp STTTHHHHHHHHHHT----TSCSHH---------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred ccHHHHHHHHHHHHH----hCCCcc---------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 489999999999766 333210 1235555 899999999999999988877 58999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~ 515 (553)
.++.++..+...+|+ +|.+.++++.+++|++.
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 999999999999998 89999999999999984
No 289
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.24 E-value=0.00046 Score=71.66 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
....+..+.+.|..+..+|+|++|+..|+++|.......+.+ .......++|+|..|..+|+|++|+.++.+|
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345678888999999999999999999999999876654433 2224678999999999999999999999999
Q ss_pred HhhC-----CCCH---HHHHHHHHHHHH
Q 008788 474 LDAN-----PAHV---KGLYRRGMAYMA 493 (553)
Q Consensus 474 l~~d-----p~n~---ka~~r~g~a~~~ 493 (553)
+++- |+++ .++..++.|+..
T Consensus 398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 398 FDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9873 4443 334445555543
No 290
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.24 E-value=0.00087 Score=53.51 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=57.5
Q ss_pred HHHHHhhhccccccCC---HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~---~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
+..+...|..++..++ ..+|...+++||. .+|.+ ..+++.+|..+++.|+|.+|+.++.+++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~-----------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYN-----------EAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566777764443 7999999999999 78887 7789999999999999999999999999
Q ss_pred hhCCCC
Q 008788 475 DANPAH 480 (553)
Q Consensus 475 ~~dp~n 480 (553)
+.+|.+
T Consensus 71 ~~~p~~ 76 (93)
T 3bee_A 71 DSNDPN 76 (93)
T ss_dssp TCCCTT
T ss_pred hhCCCC
Confidence 999974
No 291
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.00074 Score=70.10 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
...+..+.+.|..+..+|+|++|+..|++||......-+.+ .......++|+|..|..+|+|++|+.++.+||
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34567788899999999999999999999999876643332 12236789999999999999999999999999
Q ss_pred hhC
Q 008788 475 DAN 477 (553)
Q Consensus 475 ~~d 477 (553)
++.
T Consensus 410 ~i~ 412 (433)
T 3qww_A 410 AIM 412 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 292
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.12 E-value=0.0014 Score=63.21 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC
Q 008788 462 ECRKSIEACNKVLDANPA--HVKGLYRRGMAYMAL-----GEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 462 ~~~~A~~~~~~al~~dp~--n~ka~~r~g~a~~~l-----g~~~~A~~~l~~al~l~P~~ 514 (553)
..+.|.....+|+++||+ +..||.-+|..|..+ |+.+.|.++|++|++++|+.
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 368899999999999999 677999999999996 99999999999999999974
No 293
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.89 E-value=0.0054 Score=60.29 Aligned_cols=99 Identities=7% Similarity=-0.032 Sum_probs=75.3
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-- 479 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~-- 479 (553)
.-.|..++..|++++|++.+.+++. ..+.. ....++..++.+++++++.+.|.+.+.+..+.+|+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~---------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~ 170 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGID----NDEAE---------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV 170 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT----SSCST---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc----cCCCc---------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc
Confidence 4677888888999999999999877 34311 11567788889999999999999999998888883
Q ss_pred --CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHhCCC
Q 008788 480 --HVKGLYRRGMA--YMALG--EFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 480 --n~ka~~r~g~a--~~~lg--~~~~A~~~l~~al~l~P~ 513 (553)
+-..+..++.+ .+..| ++.+|...|+.+.+..|+
T Consensus 171 ~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 171 SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 34445555555 55556 899999999998877775
No 294
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.75 E-value=0.028 Score=48.34 Aligned_cols=127 Identities=8% Similarity=0.007 Sum_probs=92.6
Q ss_pred ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008788 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (553)
Q Consensus 390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 469 (553)
+.+.-+..+..+-..|+.+-. +-.++-+..|++|+..+ .|.. .......+.++.+.|.- ..+++.++|.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~---Pp~k----~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v 82 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEAL---PPDK----YGQNESFARIQVRFAEL-KAIQEPDDARDY 82 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHS---CGGG----GTTCHHHHHHHHHHHHH-HHHHCGGGCHHH
T ss_pred CHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcC---Cccc----cccHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 455566666666666776554 45578889999999842 2211 11222335677777755 567999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008788 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (553)
Q Consensus 470 ~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l 525 (553)
++.++.+....+|.|...|+--.+.|+...|++.+.+|+.+.|....-...+++.+
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 99999998888999999999999999999999999999999997543333344443
No 295
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.74 E-value=0.0012 Score=68.14 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~a 507 (553)
..+.++|.++...|.|++|+.+++++ ..|.++|.|+.++|+|++|++.+++|
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 36777888888888888888888766 46677888888888888888888877
No 296
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.59 E-value=0.0097 Score=49.92 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
...+++.+|..++|+++|.+|+++|+.+|+++|+|..|.--+..+
T Consensus 73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999886555443
No 297
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.39 E-value=0.0089 Score=52.49 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=63.7
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCC--------hhHH--HHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD--------DEEG--KVFVGKRNLLHLNVAACLLKLGECRKS 466 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~--------~ee~--~~~~~~~~~~~~nla~~~~kl~~~~~A 466 (553)
.++.+.-.|+.+|..++|.+|...|++||.....+.... .... .....-...+.+.+|.||.+++++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 466777899999999999999999999998665321100 0000 000011246888999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH
Q 008788 467 IEACNKVLDANPAHVKGLYRRGMAY 491 (553)
Q Consensus 467 ~~~~~~al~~dp~n~ka~~r~g~a~ 491 (553)
+.....+-. ....++.-..+|+.|
T Consensus 142 i~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 998654322 235777777777654
No 298
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.34 E-value=0.012 Score=49.50 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
...|++.+|..+.|+|+|.+|+++|+.+|+++|+|..|.--+..+
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999876555443
No 299
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.32 E-value=0.02 Score=48.82 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~ 489 (553)
+..|++.+|..+.|+++|.+|+++|+.+|+++|+|..|.--+..
T Consensus 76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 35689999999999999999999999999999999887655443
No 300
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.36 E-value=0.031 Score=61.33 Aligned_cols=58 Identities=7% Similarity=-0.075 Sum_probs=29.7
Q ss_pred hhhccccccCCHHHHH-HHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 403 VTGNRLFKEGKFELAK-AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~-~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+..+...++..+|+ ..|.+|+. ..|.+ ..+++.+|....+.+++++|...+++++.
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~----~~P~s-----------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQ----CIPNS-----------AVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444556666776 77777776 33433 23344444444444444444444444443
No 301
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.35 E-value=0.18 Score=55.24 Aligned_cols=112 Identities=7% Similarity=0.001 Sum_probs=64.7
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhc-------cCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNH-------VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~-------~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+....+.|++++|...|++++..+.. ..|.+++....+......+|...+....+.+..+.|...+.+|++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445678999999999999986421 113221111111112233555556555666666777777777766
Q ss_pred h-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 008788 476 A-NPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 476 ~-dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P~~ 514 (553)
. .+...+.|...|....+.+ +++.|+..|+++++..|++
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 5 3344555555555555544 3667777777777766664
No 302
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.11 Score=57.20 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 449 ~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~a 507 (553)
++.-.|.-++..++|+.|+..+.+|...-|.....||+++.||..+++|+.|+-.++-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44445666677899999999999999999999999999999999999999999988877
No 303
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.71 E-value=0.37 Score=42.16 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC---------------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLD--AN---------------PAHVKG-LYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~--~d---------------p~n~ka-~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
+...+--++||.++++|+.|+......|+ .| |.+..- +..+|..+.++|+-++|+.+|.+..
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 45566779999999999999999999992 22 333333 3446999999999999999999999
Q ss_pred HhCCC
Q 008788 509 KVDKS 513 (553)
Q Consensus 509 ~l~P~ 513 (553)
..+|=
T Consensus 142 ~~~~l 146 (242)
T 3kae_A 142 GKSFL 146 (242)
T ss_dssp HHCCC
T ss_pred CCccc
Confidence 88874
No 304
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.04 E-value=0.26 Score=49.97 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=78.6
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---PA 479 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d---p~ 479 (553)
..|..++..|+|.+|+..+.+.++.+...+. ..+...+|......|..++++.++...+.+|.... +.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 6788899999999999999999998766432 23457789999999999999999999999887553 12
Q ss_pred C--HHH--HHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008788 480 H--VKG--LYRRGMAYM-ALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 480 n--~ka--~~r~g~a~~-~lg~~~~A~~~l~~al~ 509 (553)
. ..| ..--|..|+ ..++|..|..+|-.+++
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 2 233 344588999 89999999999998874
No 305
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.62 E-value=0.41 Score=45.40 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=56.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 008788 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (553)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~ 516 (553)
.+++.+...+|+..+...++.+|.|++.--.+-+.+.-.|+|+.|..-++.+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567899999999999999999999999999999999999999999999999999998543
No 306
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.62 E-value=0.54 Score=45.73 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CC-----HHHHHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GE-----CRKSIEACNK 472 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl--~~-----~~~A~~~~~~ 472 (553)
...+.|-.++..|+|.+|+..|+.+|..+.-+.-.+++|.++++++...|...+-.+.+.+ .+ .++..+.++-
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL 183 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM 183 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence 3557899999999999999999999997765555666666666666555543333233333 21 1233333443
Q ss_pred HHhh-----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 473 VLDA-----NPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 473 al~~-----dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
|.-. .|.+. -++..--...++.++|.-|...-++.|++.|.
T Consensus 184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3322 33222 23333344566889999999999999999986
No 307
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=93.33 E-value=0.29 Score=47.57 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=72.1
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH----HHHHHHHHH
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC----RKSIEACNK 472 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~----~~A~~~~~~ 472 (553)
......+.|-.++..|+|.+|+..|+.+|..+.-+.-.+++|.++++++...|...+-.+.+.+.+- +...+.++-
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lEL 192 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLEL 192 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3333456899999999999999999999987665554555555556655554433332222222110 111222222
Q ss_pred HH-----hhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 473 VL-----DANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 473 al-----~~dp~n~-ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
|. ++.|.+. -++..--...++.++|.-|....++.|++.|..
T Consensus 193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 22 2223222 233333455668899999999999999999963
No 308
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.01 E-value=0.19 Score=50.39 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=55.1
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~k 482 (553)
..+..++..|++++|+..+++|+. ++| + ...|..+|.++...|++++|++.+.+|+.++|...
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~----Ln~-s-----------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~- 344 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGID----LEM-S-----------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN- 344 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----HCC-C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh----cCC-C-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-
Confidence 345556668999999999999999 444 2 34677889999999999999999999999999664
Q ss_pred HHHHH
Q 008788 483 GLYRR 487 (553)
Q Consensus 483 a~~r~ 487 (553)
.|+..
T Consensus 345 t~~~~ 349 (372)
T 3ly7_A 345 TLYWI 349 (372)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 45443
No 309
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.48 E-value=2 Score=40.69 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008788 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (553)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka 483 (553)
...+++.++.++|+......++ .+|.+ ..+...+...+.-.|+|+.|...++.+.+++|.....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR----~~P~d-----------a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 3467899999999999999999 88988 4444555555556899999999999999999987653
No 310
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.43 Score=49.09 Aligned_cols=98 Identities=14% Similarity=0.019 Sum_probs=76.0
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--- 477 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d--- 477 (553)
+...|..+++.|++..|++.|.++....... . ....++++...+++..++|..+..++++|..+-
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--~----------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIST--G----------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--C----------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--H----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 4578888999999999999999988754322 1 236788888889999999999999999987552
Q ss_pred CC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 478 PA-HV--KGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 478 p~-n~--ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
++ .. +.....|.++...++|..|-..|..++.-
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 21 12 33445678888899999999999887654
No 311
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.06 E-value=1.4 Score=46.17 Aligned_cols=77 Identities=8% Similarity=-0.004 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~ 524 (553)
..++.++|....-...+..|..+|.+|+.++|++..+|..+|......+++-+|+-+|.+++....... .++..|..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~-~a~~nL~~ 228 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-AASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-HHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh-hHHHHHHH
Confidence 457778888888888899999999999999999999999999999999999999999999998765553 34444433
No 312
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=90.85 E-value=0.32 Score=37.41 Aligned_cols=41 Identities=29% Similarity=0.283 Sum_probs=34.9
Q ss_pred Chhh-HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 390 SFDG-IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 390 ~~~e-~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
+..+ .++.|..+-.+|...=+.|+|.+|+.+|..|+++|..
T Consensus 2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4444 5677888889999999999999999999999998754
No 313
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.34 E-value=4.3 Score=42.31 Aligned_cols=108 Identities=13% Similarity=-0.028 Sum_probs=75.0
Q ss_pred HHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHH----------HH---Hh----------------hhhhHHHH
Q 008788 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG----------KV---FV----------------GKRNLLHL 451 (553)
Q Consensus 401 ~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~----------~~---~~----------------~~~~~~~~ 451 (553)
+...+..+...|+.+.|...|.+|+.. |.+..-+ +. +. .....+|.
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~-----P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM-----SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 445566666788999999999999983 4432110 00 00 11124566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 008788 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg-~~~~A~~~l~~al~l~P~~ 514 (553)
+.+....+.+..+.|...+.+| ...+.....|...|.....++ +.+.|+..|+.+++.-|++
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence 6677776788899999999999 433345566666666666666 6999999999999988875
No 314
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.27 E-value=2.7 Score=43.90 Aligned_cols=39 Identities=8% Similarity=0.069 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 486 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r 486 (553)
..+|++.+..+...++.+.|...+.+|+.. |.+...++.
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~ 251 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY 251 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 568899999999999999999999999999 987654443
No 315
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.86 E-value=0.66 Score=51.04 Aligned_cols=59 Identities=24% Similarity=0.297 Sum_probs=51.1
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
.+..++..+..+|+|+.|+.+-++|+. +.|.+ -.+|..||.||.++++|+.|+-..+..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~----~aPse-----------F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTE----LALDS-----------FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHh----cCchh-----------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455667778889999999999999999 67766 679999999999999999999877765
No 316
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=86.57 E-value=1.2 Score=36.56 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.2
Q ss_pred CCChh-hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 388 GLSFD-GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 388 ~~~~~-e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
.|+.. ..+..|..+..+|...=..++|.+|+.+|..|+++|..
T Consensus 7 ~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 7 GMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 35544 56778888889999888999999999999999998754
No 317
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=86.13 E-value=0.83 Score=35.07 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 392 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
...++.|..+-.+|...-+.|+|.+|+.+|.+|+++|..
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999998754
No 318
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=86.09 E-value=0.94 Score=34.91 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
+....+..|..+..+|...=..|+|++|+.+|..|+++|..
T Consensus 5 ~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 5 STGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33345677888888888888999999999999999997654
No 319
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.00 E-value=5.9 Score=40.69 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=75.5
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD- 475 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~- 475 (553)
.+......++.++..|+|.+|............. ..+ ...+..+++-....|+..++|..|...++++..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~--~~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYG--SME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--SSC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh--ccc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3555567788889999999999998886653222 222 122366777788888899999999999998742
Q ss_pred --hCCCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 476 --ANPAH--VKG--LYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 476 --~dp~n--~ka--~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
-.+.+ .++ +...|..+.+.++|.+|-.+|..++..
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 22333 334 444588888999999999999888754
No 320
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=84.40 E-value=2.2 Score=33.44 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
.++.|..+-.+|..+-+.++|.+|+.+|..|+++|..
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999998765
No 321
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=84.22 E-value=7.5 Score=40.61 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=69.2
Q ss_pred hccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Q 008788 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKG 483 (553)
Q Consensus 405 G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka 483 (553)
-+.+.+.|++++|...|++..+. .+.|+ ...|+.+-.+|.+.|++++|.+.+.+..+.. .-+...
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~--g~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAF--GIQPR------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHT--TCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCCc------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 34556778888888888876551 12221 3567777777888899999999988877653 226777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 008788 484 LYRRGMAYMALGEFEEAQRDFEMMMKV--DKS 513 (553)
Q Consensus 484 ~~r~g~a~~~lg~~~~A~~~l~~al~l--~P~ 513 (553)
|..+-.++.+.|++++|.+.|++..+. .|+
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 888888899999999999988877653 555
No 322
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=81.60 E-value=2.5 Score=32.57 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=28.9
Q ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 397 ~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
.|..+..++..+-+.|+|++|+.+|..|+++|..
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5666777888888999999999999999997654
No 323
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=81.45 E-value=4.2 Score=41.56 Aligned_cols=92 Identities=21% Similarity=0.152 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHhhh--ccccccCC-HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008788 391 FDGIMDEAEKIRVTG--NRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G--~~~~~~g~-~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 467 (553)
..+++..|+.++.++ +.--+.-+ -+.|+.+|++|+++|+.+...++-+ ....++++|-- |+.|=
T Consensus 422 L~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~-------~v~~~~~~ak~------yE~aG 488 (526)
T 2wb7_A 422 LQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQ-------MFLNYLNAAKK------HEMAG 488 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH-------HHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH-------HHHHHHHHhhh------hhhcc
Confidence 455555666666665 22222223 3568999999999888876544321 13445555432 44444
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 468 ~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
.++. .|--....|..+.|..+-+.|-++
T Consensus 489 Dyy~---------------~AA~k~~yG~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 489 DYYV---------------NAARKALNGDLEQAKIDAEKAKEY 516 (526)
T ss_dssp HHHH---------------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHH---------------HHHHHHhcCccHHHHHHHHHHHHH
Confidence 4333 333345567777777766655443
No 324
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=79.86 E-value=24 Score=36.69 Aligned_cols=90 Identities=8% Similarity=0.071 Sum_probs=69.7
Q ss_pred ccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 008788 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRG 488 (553)
Q Consensus 410 ~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d-p~n~ka~~r~g 488 (553)
+.+.+++|...|.+-.. ..+.|+ ...|+.+-.+|.+.|++++|++.+++..+.. .-+...|-.+-
T Consensus 82 ~~~~l~~A~~lf~~M~~--~G~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI 147 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIV--DKVVPN------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147 (501)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCCCC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHH--hCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHH
Confidence 44557778877777554 112232 4578888889999999999999999887653 23788888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCC
Q 008788 489 MAYMALGEFEEAQRDFEMMMKV--DKS 513 (553)
Q Consensus 489 ~a~~~lg~~~~A~~~l~~al~l--~P~ 513 (553)
.+|.+.|++++|.+.|....+. .|+
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999988764 565
No 325
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=78.39 E-value=6 Score=43.45 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHH-------------HHHcCCHHHHHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA--------NPAHVKGLYRRGMA-------------YMALGEFEEAQRDFE 505 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~--------dp~n~ka~~r~g~a-------------~~~lg~~~~A~~~l~ 505 (553)
...|.++|..+++.++++.|+..|.++-.. ...+.+.+-+++.. +..+|++++|++.|.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH
Confidence 357888999999999999999888875222 23455544444444 444555555555554
Q ss_pred H
Q 008788 506 M 506 (553)
Q Consensus 506 ~ 506 (553)
+
T Consensus 761 ~ 761 (814)
T 3mkq_A 761 K 761 (814)
T ss_dssp H
T ss_pred H
Confidence 3
No 326
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=77.79 E-value=5.7 Score=35.12 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHhhhccccccCCHHHHHHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKV 424 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~A 424 (553)
.++..|......|++.-|.++|.++
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHh
Confidence 5777777777778888888777775
No 327
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.37 E-value=52 Score=32.99 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=92.4
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc------------------CCCChhH----------HHH---Hhhhh
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV------------------NPQDDEE----------GKV---FVGKR 446 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~------------------~~~~~ee----------~~~---~~~~~ 446 (553)
-....+.|..+.+.|++++-.........++..+ .|...+. |.. ..-++
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888887777665433322111 1222211 110 11112
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDA 518 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp------~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~--~~~~~ 518 (553)
..+-.++|..|+..++|.+|+..+.+.++.-. .-...+....+.|..++++..+.+.|.+|....-. ..+.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 33555889999999999999999998886421 12345677789999999999999999999876410 12456
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhc
Q 008788 519 TAALSKLKKQRRK-LKVRLENSLKGCL 544 (553)
Q Consensus 519 ~~~l~~l~~~~~~-~~~~~~~~~~~mf 544 (553)
...+..+.-.... ..+.-+..++-+|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHH
Confidence 6677776666655 3444444444443
No 328
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=76.63 E-value=7.9 Score=40.35 Aligned_cols=79 Identities=10% Similarity=-0.004 Sum_probs=66.3
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~ 479 (553)
.+-..|...-.+..+..|...|.+|+. +.|.+ ...|+.+|..+.-.++.-+|+-+|.++|.....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~----~~P~~-----------G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSN-----------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTB-----------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH----hCCCC-----------CchHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 455677777777889999999999999 77776 678999999999999999999999999988777
Q ss_pred CHHHHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMA 493 (553)
Q Consensus 480 n~ka~~r~g~a~~~ 493 (553)
.+.|.-++...+..
T Consensus 219 f~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 219 FPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHH
Confidence 77777777666654
No 329
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=75.87 E-value=7.3 Score=42.72 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=53.8
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHH-----HhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLR-----DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~-----~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
.++..|..+.+.++++.|.++|.++-+ .|... ..+ ...+..++....+.+++..|...+.+
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~-~~~-----------~~~~~~~~~~a~~~~~~~~A~~~~~~-- 748 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS-FNN-----------KEGLVTLAKDAETTGKFNLAFNAYWI-- 748 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH-TTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH-cCC-----------HHHHHHHHHHHHHcCchHHHHHHHHH--
Confidence 457788888889999999999988622 12111 111 12233445555566666666655432
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 475 ~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
. .++ -..-..|..+++|++|...-+ ...|.
T Consensus 749 -~--g~~---~~a~~~~~~~~~~~~A~~lA~---~~~~~ 778 (814)
T 3mkq_A 749 -A--GDI---QGAKDLLIKSQRFSEAAFLGS---TYGLG 778 (814)
T ss_dssp -H--TCH---HHHHHHHHHTTCHHHHHHHHH---HTTCC
T ss_pred -c--CCH---HHHHHHHHHcCChHHHHHHHH---HhCCC
Confidence 1 111 124566778899999887533 45555
No 330
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.30 E-value=17 Score=38.95 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=45.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 457 ~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
.++.++|..|..++.+.-.......++.|.+|.++..+|+-++|...|+++.+
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45679999999999776554446788999999999999999999999988765
No 331
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=73.71 E-value=8.2 Score=34.09 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=40.9
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 458 ~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
+.+|+++.|.+.|... ++...|-++|.+....|+++-|..+|+++-
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4689999999998765 678899999999999999999999999874
No 332
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=72.90 E-value=16 Score=30.87 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=31.8
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008788 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (553)
Q Consensus 474 l~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~ 511 (553)
+.-++-++..++.+|.||.++|+..+|-+.+++|.+--
T Consensus 118 l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 118 LKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 44456679999999999999999999999999998643
No 333
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.71 E-value=6 Score=45.99 Aligned_cols=106 Identities=10% Similarity=-0.040 Sum_probs=72.7
Q ss_pred HhhhccccccCCHHHHHHHHHHHHHHhhccCCCC--hhHHH------HHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD--DEEGK------VFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (553)
Q Consensus 402 k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~--~ee~~------~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 473 (553)
.-.|..++..|++++|..+|.+|...+....... ..... .........|+.....+-+.+.++.+++.+..|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788889999999999998755332211111 01110 011223456677777888889999999999999
Q ss_pred HhhCCCC-H--H--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008788 474 LDANPAH-V--K--GLYRRGMAYMALGEFEEAQRDFEMM 507 (553)
Q Consensus 474 l~~dp~n-~--k--a~~r~g~a~~~lg~~~~A~~~l~~a 507 (553)
|+..+.+ . + .|.+.=+++..+++|++|-..+...
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9876433 2 2 5778889999999999998777543
No 334
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.90 E-value=9.6 Score=39.69 Aligned_cols=68 Identities=9% Similarity=0.059 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP--AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp--~n---~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~ 514 (553)
..+++-+-.+|+..+.|.+|....+++.--.. .| +.-+|..|+++...++|.+|.++|..|++.-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 56777778889999999999999999863321 12 4557778999999999999999999999988764
No 335
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=70.55 E-value=4.1 Score=31.48 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 395 ~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
+..|-..-.++..+.+.|+|++||.++.+|..+|..
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 445667778899999999999999999999998765
No 336
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=69.93 E-value=30 Score=26.40 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 484 LYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 484 ~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
+..+|.-.-..|+|++|+..|..|++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444445566777766666665554
No 337
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.60 E-value=39 Score=33.02 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhhhccccccCCHHHHHHHHH-HHHHHh
Q 008788 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYE-KVLRDF 428 (553)
Q Consensus 392 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~-~Al~~l 428 (553)
++..+.-..+|...+.+.++++|.+|++... -|+.++
T Consensus 29 ~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll 66 (336)
T 3lpz_A 29 EEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLL 66 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3345556667788888889999999988644 344433
No 338
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.63 E-value=14 Score=30.00 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc---cCC----CChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH
Q 008788 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH---VNP----QDDEEGKVFVGKRNLLHLNVAACLLKLGECRK 465 (553)
Q Consensus 393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~---~~~----~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~ 465 (553)
.....|-.+.+.|-..=..|+-++|+.+|+++|..|.. +.. ...+.|+..+.+..+...||..+.-+++....
T Consensus 17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~ 96 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK 96 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666666776666679999999999999998764 222 23466777777778888888888777665443
No 339
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.54 E-value=7.6 Score=31.48 Aligned_cols=63 Identities=10% Similarity=0.122 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHHH
Q 008788 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS---SEPDATAALSKLKKQRRK 531 (553)
Q Consensus 461 ~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~---~~~~~~~~l~~l~~~~~~ 531 (553)
..|++|..+.++||.+|.. +.-...+.-|...+..|.+++.+..+ .....+.....++.+++.
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 4578999999999999872 44455556667777788888888653 222344444444444443
No 340
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=67.82 E-value=7.9 Score=29.88 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
+..+-|++.++..-|+|++|+++.++|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455667777777777777766555444
No 341
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=62.88 E-value=26 Score=30.29 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=49.8
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHH-HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH-LNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~-~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
......|..+|..|+|-+|-+.+..+-. ..+..+++...++ ..+. +-.|..+++.+++.-|...+.+++..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~----~~~~~~~er~~lq---GLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWY----NYGRGNTESKFLH---GMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT----TTCSSSHHHHHHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHH----hcCCCchHHHHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3345788899999999999998888665 2232222322222 3344 55677778889999999999999874
No 342
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=62.46 E-value=17 Score=27.74 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=28.4
Q ss_pred HHHHHHHhhhccccccCCHHHHHHHHHHHHH
Q 008788 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLR 426 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~ 426 (553)
..++.+...|.++|+.++|.+|+..++++..
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 4678888999999999999999999999987
No 343
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.20 E-value=65 Score=31.10 Aligned_cols=27 Identities=19% Similarity=-0.021 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008788 479 AHVKGLYRRGMAYMALGEFEEAQRDFE 505 (553)
Q Consensus 479 ~n~ka~~r~g~a~~~lg~~~~A~~~l~ 505 (553)
.++..|...|..+.+-+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 466778888888888888888888775
No 344
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=58.50 E-value=27 Score=28.40 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 008788 497 FEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 497 ~~~A~~~l~~al~l~P~~ 514 (553)
|..|++.|..+++.++.+
T Consensus 41 Y~~Aie~l~~alk~e~~~ 58 (117)
T 2cpt_A 41 YQHAVQYFLHVVKYEAQG 58 (117)
T ss_dssp HHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 334445555555556544
No 345
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=58.36 E-value=24 Score=35.34 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=50.1
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..+...+..+...|++.+|+....+++. .+|.+ ..+|..+-.++...|+..+|++.|.++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~----~~P~~-----------E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTF----EHPYR-----------EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667777889999999999999888 67876 35777888889999999999999887543
No 346
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=57.50 E-value=30 Score=29.69 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008788 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (553)
Q Consensus 411 ~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a 490 (553)
.++.++|...|+.|++. +.. .+.+|...|.--++.++...|.....+|+.+.|. ++-++..|..
T Consensus 73 i~D~d~aR~vy~~a~~~----hKk-----------FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN----CKK-----------FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHH----CTT-----------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH----hHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 37889999999999983 111 2778899999999999999999999999999884 5556666666
Q ss_pred HHHcCC
Q 008788 491 YMALGE 496 (553)
Q Consensus 491 ~~~lg~ 496 (553)
.++.|.
T Consensus 137 nl~~~~ 142 (161)
T 4h7y_A 137 NLNLQK 142 (161)
T ss_dssp HHHTTC
T ss_pred hhhcCC
Confidence 666654
No 347
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=57.44 E-value=57 Score=37.07 Aligned_cols=99 Identities=10% Similarity=-0.070 Sum_probs=74.0
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN- 477 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~-~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d- 477 (553)
.+...-+.+++.|+.++|...+.+.-+... .+.|+ ...|+-+-..|.+.|++++|++.+++..+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd------------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~ 196 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT------------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC------------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 355566778899999999999876543211 12332 5678888888999999999999999877653
Q ss_pred CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 008788 478 PAHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKV 510 (553)
Q Consensus 478 p~n~ka~~r~g~a~~~lg~-~~~A~~~l~~al~l 510 (553)
.-|.-.|--+-.++.+.|+ .++|.+.|+...+-
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2377788888888888887 57888888877664
No 348
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=57.42 E-value=31 Score=35.40 Aligned_cols=104 Identities=6% Similarity=-0.007 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------C--C
Q 008788 411 EGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--------P--A 479 (553)
Q Consensus 411 ~g~~~~A~~~Y~~Al~~l~~-~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~d--------p--~ 479 (553)
....+.|.+...++...+.. .++...+..-.-+....-+.+++..+|+++++...|.......-... | .
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 34566677777777665322 22211110000111223455678899999999988877765432221 1 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-DKSS 514 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l-~P~~ 514 (553)
-+.-+|..|+.++..++|.+|.++|..|++. -|.+
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 2445888999999999999999999999998 6653
No 349
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=57.11 E-value=49 Score=30.29 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=44.6
Q ss_pred cccCCHHHHHHHHHHHHHHhhc-cCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Q 008788 409 FKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDA 476 (553)
Q Consensus 409 ~~~g~~~~A~~~Y~~Al~~l~~-~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~ 476 (553)
|..|+-+.|...|+.|.+.... +.|. +..+..+.+|.+..|.. +++.++|+..+.+|+..
T Consensus 136 ~~~g~~e~a~~aY~~A~~iA~~~L~pt--------hPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 136 FGLCSLEDSKKIHQDAFTLLCEHPDKI--------EQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHCGGGG--------GGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHhhCCCC--------ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456688999999999987653 3332 33456778888877664 78999999999999763
No 350
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=55.80 E-value=28 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P 512 (553)
+..+...|+-++++++|-+|...|+++..+..
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 34455567777888888888888888887654
No 351
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.69 E-value=16 Score=37.08 Aligned_cols=80 Identities=8% Similarity=0.049 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK-SSEPDATAALS 523 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp---~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P-~~~~~~~~~l~ 523 (553)
.++..+|.-|++.|++..|++.+.++..... .-...++..-.++...++|..|...+.+|..+-. ....+.+..++
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677899999999999999999999887643 3467888889999999999999999999987621 11133444444
Q ss_pred HHHH
Q 008788 524 KLKK 527 (553)
Q Consensus 524 ~l~~ 527 (553)
.+.-
T Consensus 212 ~~~g 215 (429)
T 4b4t_R 212 TYYG 215 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 352
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=55.63 E-value=1.1e+02 Score=26.88 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHH---hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF---VGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (553)
Q Consensus 398 a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~---~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al 474 (553)
+....-+.-++.+.++|..|+.+..+.|.-=-..+|+-|-.-+.+ ..-..-.++.+|..+...+.-++|+.++.+..
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 444555666777888888888888887731001122211110000 00012367778888889999999999998876
Q ss_pred hhCC------------------------------------------------CCHH----------HH--HHHHHHHHHc
Q 008788 475 DANP------------------------------------------------AHVK----------GL--YRRGMAYMAL 494 (553)
Q Consensus 475 ~~dp------------------------------------------------~n~k----------a~--~r~g~a~~~l 494 (553)
..+| +++| .| -..|..++.+
T Consensus 142 ~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l 221 (242)
T 3kae_A 142 GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL 221 (242)
T ss_dssp HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT
T ss_pred CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc
Confidence 4432 1111 11 1246778888
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 008788 495 GEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 495 g~~~~A~~~l~~al~l~P~ 513 (553)
|..++.++.|...-+.||.
T Consensus 222 g~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 222 GMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TCHHHHHHHHHHHHHHSTT
T ss_pred ccchhHHHHHHHHHhcCCC
Confidence 9999999988888888885
No 353
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=52.45 E-value=40 Score=31.57 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 008788 415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (553)
+.|...|++|++....+.|.+ ..+..+.+|.+..|.. +++.++|+..+.+|+.
T Consensus 173 e~a~~aY~~A~~iA~~L~pth--------PirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTH--------PIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568888999998774355544 3456677788877766 7899999998888764
No 354
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=49.70 E-value=96 Score=30.73 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 481 ~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
+.|+|+.|..+...+++-+|+..|+.|.+.
T Consensus 253 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (376)
T 3r9m_A 253 AYAYCYHGETLLASDKCGEAIRSLQEAEKL 282 (376)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 557888888888899999998888877654
No 355
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=49.36 E-value=3.5 Score=38.68 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~ 431 (553)
....|..+..+|..+=+.|+|.+|+.+|..|+++|...
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp --------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45567778889999999999999999999999987553
No 356
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.43 E-value=1.5e+02 Score=29.92 Aligned_cols=85 Identities=7% Similarity=0.018 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChH
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK---VDKSSEP 516 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----dp~n--~ka~~r~g~a~~~lg~~~~A~~~l~~al~---l~P~~~~ 516 (553)
++.+...||..|...|+|.+|......+..- +... ...+....+.+...++|..|...++++.. -.+.+ +
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~-~ 214 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY-E 214 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC-H
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc-H
Confidence 4667788999999999999999999887632 2222 34677778999999999999999998742 13332 3
Q ss_pred HHHHHHHHHHHHHHH
Q 008788 517 DATAALSKLKKQRRK 531 (553)
Q Consensus 517 ~~~~~l~~l~~~~~~ 531 (553)
..+..+..+.-++..
T Consensus 215 ~lk~~~~~~~~~~~~ 229 (445)
T 4b4t_P 215 SLKLEYYNLLVKISL 229 (445)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555444443
No 357
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=47.43 E-value=76 Score=23.67 Aligned_cols=49 Identities=8% Similarity=0.137 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHHHHH
Q 008788 485 YRRGMAYMALGEFEEAQRDFEMMMKVD-----KSSEPDATAALSKLKKQRRKLK 533 (553)
Q Consensus 485 ~r~g~a~~~lg~~~~A~~~l~~al~l~-----P~~~~~~~~~l~~l~~~~~~~~ 533 (553)
..+|+=|..+|+|+.|+.+|+.+++.= -=.++..+.....+++.+.+..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~ 69 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEA 69 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHH
Confidence 345666777777777777777776530 0001234445555555555443
No 358
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=46.89 E-value=46 Score=30.68 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 008788 415 ELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~-~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (553)
+.|...|++|++... .+.|.+ .++..+.+|.+..|.. +++.++|+..+.+|+.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pth--------PirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTH--------PIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888999988764 355544 3445667777776665 7888888888887653
No 359
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=46.86 E-value=90 Score=23.48 Aligned_cols=18 Identities=6% Similarity=0.254 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 008788 497 FEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 497 ~~~A~~~l~~al~l~P~~ 514 (553)
|.+|++.|..+++.+|+.
T Consensus 42 Y~~aie~l~~alk~e~d~ 59 (83)
T 2w2u_A 42 YKKAIEVLAQLVSLYRDG 59 (83)
T ss_dssp HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHCCCH
Confidence 334445555555566653
No 360
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=44.75 E-value=31 Score=37.24 Aligned_cols=50 Identities=24% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~ 497 (553)
......|...+..|+|.-|.+.++.++..+|+|..|...++.+|.++|.-
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 45667888888999999999999999999999999999999999999854
No 361
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=44.70 E-value=29 Score=26.69 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 008788 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRRKLKV 534 (553)
Q Consensus 461 ~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (553)
..|+.|..+.+++|..|..+. .|.-...+.-|...+..|.+++.+.-.-....+.....++.++..-..
T Consensus 11 ~~h~~AF~~Is~aL~~DE~~~-----~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~ 79 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDEDEK-----AGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-----SSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccc-----CCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHH
Confidence 457889999999998875420 011111122233445566777776433122344455555555554433
No 362
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.76 E-value=1e+02 Score=23.15 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 008788 497 FEEAQRDFEMMMKVDKSS 514 (553)
Q Consensus 497 ~~~A~~~l~~al~l~P~~ 514 (553)
|..|++.|..+++.+|+.
T Consensus 34 Y~~aie~l~~~lk~e~d~ 51 (83)
T 2v6y_A 34 YKKAIEVLSQIIVLYPES 51 (83)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCH
Confidence 344555555666667654
No 363
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.72 E-value=57 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 487 RGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 487 ~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
+|..+...|++++|..+|-+|+.+-|+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 566677777777777777777777665
No 364
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=43.55 E-value=56 Score=30.37 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 008788 415 ELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~-~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (553)
+.|...|++|.+... .+.|.+ .++..+.+|.+.-|.. +++.++|+..+.+|+.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pth--------PirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTH--------PIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888999988654 355544 3445667777766665 6888888888877653
No 365
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=43.26 E-value=56 Score=30.54 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 008788 415 ELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD 475 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~-~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~ 475 (553)
+.|...|++|.+... .+.|.+ .++..+.+|.+.-|.. +++.++|+..+.+|+.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pTh--------PirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTH--------PIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566778888887653 344443 3445666777766655 6788888887777653
No 366
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.97 E-value=48 Score=24.76 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=27.8
Q ss_pred CChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhc
Q 008788 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (553)
Q Consensus 389 ~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~ 430 (553)
|+..+..+.+ ..|.++...|+|+.|+..|+.++..++.
T Consensus 7 ~~~~~i~e~~----k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 7 MSLQMIVENV----KLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp SSSHHHHHHH----HHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH----HHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 4555544443 5566667789999999999999987654
No 367
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=42.27 E-value=58 Score=30.48 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 008788 415 ELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVL 474 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~-~~~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al 474 (553)
+.|...|++|+.... .+.|.+ .++..+.+|.+..|.. +++.++|+..+.+|+
T Consensus 152 e~a~~aY~~A~~iA~~~L~pth--------PirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTH--------PIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 467888999998764 355544 3456677788777665 789999999888866
No 368
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=40.68 E-value=1.2e+02 Score=23.24 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 008788 497 FEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 497 ~~~A~~~l~~al~l~P~ 513 (553)
|..|++.|..+++.+|+
T Consensus 38 Y~~Aie~l~~alk~e~~ 54 (93)
T 1wfd_A 38 YQEGIDMLLQVLKGTKE 54 (93)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 33455555556666765
No 369
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.48 E-value=1.3e+02 Score=25.84 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH-HHHHHH--HcCCHHHHHHHHHHHHHh
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPAH------VKGLYR-RGMAYM--ALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n------~ka~~r-~g~a~~--~lg~~~~A~~~l~~al~l 510 (553)
+..+..++..++|-+|-+.+..+-...+.. .+++.+ .|.++. +.|++.-|...+.+|+..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344556667799999999999888776655 455666 555554 469999999999999873
No 370
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=39.40 E-value=65 Score=29.69 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCChhHHHHHhhhhhHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 008788 414 FELAKAKYEKVLRDFN-HVNPQDDEEGKVFVGKRNLLHLNVAACLL-KLGECRKSIEACNKVLD 475 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~-~~~~~~~ee~~~~~~~~~~~~~nla~~~~-kl~~~~~A~~~~~~al~ 475 (553)
-+.|...|++|.+... .+.|.+ ..+..+.+|.+.-|. -+++.++|+..+.+|+.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pth--------PirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTN--------PIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888999988664 355544 344567777777666 46889999888877653
No 371
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=37.46 E-value=1e+02 Score=26.68 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008788 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (553)
Q Consensus 465 ~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~ 513 (553)
.|+.....+...||.-....-++..++..+.+....+..|...+..||.
T Consensus 74 ~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 74 EAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3455555555677766667777888888888888778777777777875
No 372
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=37.08 E-value=2.7e+02 Score=28.66 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 463 CRKSIEACNKVLDANPA-----------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 463 ~~~A~~~~~~al~~dp~-----------n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|+..+++++.|+..-|. ..-|+-.+|++++..++|++|.+..++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777777765442 2347888999999999999999999999863
No 373
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.21 E-value=67 Score=28.78 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-----HHHHHHHcCCHH
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-----RGMAYMALGEFE 498 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r-----~g~a~~~lg~~~ 498 (553)
.+..++.+|..++-.++|.+|..++..|++..|.......+ +--+.+.+|++.
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 36678889999999999999999999999998765443322 233445567754
No 374
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=35.21 E-value=88 Score=23.95 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=39.8
Q ss_pred HHHHHHHhhhcccccc---CCHHHHHHHHHHHHHHhhc---cC-CCChhHHHHHhhhhhHHHHHHHHHHHHc
Q 008788 396 DEAEKIRVTGNRLFKE---GKFELAKAKYEKVLRDFNH---VN-PQDDEEGKVFVGKRNLLHLNVAACLLKL 460 (553)
Q Consensus 396 ~~a~~~k~~G~~~~~~---g~~~~A~~~Y~~Al~~l~~---~~-~~~~ee~~~~~~~~~~~~~nla~~~~kl 460 (553)
+.|-.+.++|-..=.. |+-++|+..|++.+..|.. +. ....++|+..+.+..+-..||..+.-++
T Consensus 14 ~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL 85 (89)
T 3eab_A 14 KQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444 8888899999998887654 11 1244556666666666666666554443
No 375
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.05 E-value=50 Score=37.36 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 456 ~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
.++..+.++- ....+..-|.++-.-|-+|.++..+|++++|..+|++|-
T Consensus 819 ~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 819 KLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344555543 334567778888888999999999999999999999875
No 376
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=34.70 E-value=38 Score=37.55 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCCCEEEEEEEEEEecCCCcEEEeccCC------------------------CCCCCeEEEeCCCCchhHHHHHHhcCCC
Q 008788 287 LHDSLLCVHYKGMLLNEEKKVFYDTRVD------------------------NDGQPLEFSSGEGLVPEGFEMCVRLMLP 342 (553)
Q Consensus 287 ~~~~~V~v~y~~~~~~~~g~~~~~s~~~------------------------~~~~~~~f~lG~~~v~~g~e~~l~~M~~ 342 (553)
.+|+.|.|.|+..|..+++..-++.+.+ .....++|.+|.+.+.+-++..+..|..
T Consensus 562 ~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ies~~e~~fe~g~g~~~~~le~vV~qms~ 641 (950)
T 3htx_A 562 TNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVEPIESNEEIEFEVGTGSMNPHIESEVTQMTV 641 (950)
T ss_dssp CTTEEEEEEEEEEEEECC----------------------------CCCEEEEEEEEEEEEETTTCBCHHHHHHHTTCCT
T ss_pred CCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhhcccccHHHHHHHhcCCccchhhheeeeccc
Confidence 4899999999999976433221111000 0123468999999999999999999999
Q ss_pred CcEEEEEe
Q 008788 343 GEIALVTC 350 (553)
Q Consensus 343 GE~~~~~~ 350 (553)
|+...|..
T Consensus 642 gqT~~F~~ 649 (950)
T 3htx_A 642 GEYASFKM 649 (950)
T ss_dssp TCEEEEEE
T ss_pred cceeEEec
Confidence 99999885
No 377
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.19 E-value=1.1e+02 Score=23.71 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=40.6
Q ss_pred hhhccccccCCHHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 403 ~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
..|..+|..|+|-+|-+.++.+-.. .+. ++...++ .-+..-.|..+++.|++ |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~----~~~--~~~~~~q---GLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLK----ATG--EERRLLQ---GVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CCH--HHHHHHH---HHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhh----CCC--chHHHHH---HHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4678889999999999998887662 222 2222221 23344555666667777 7888887775
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.79 E-value=52 Score=38.02 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
++.++++.++++-|.. .+...+.++-.-|-+|.++...|++++|..+|++|.
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4455556666655443 345667888888999999999999999999998873
No 379
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=33.64 E-value=2.9e+02 Score=31.52 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DKSSEPDATA 520 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----dp~n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l--~P~~~~~~~~ 520 (553)
...|+-+-.+|.+.|+.++|...+...-+. -.-|...|.-+-..|.+.|++++|++.|+...+. .|+. .....
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv-vTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL-LSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-HHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-HHHHH
Confidence 446777778889999999999999764322 2348889999999999999999999999988764 6763 33344
Q ss_pred HHH
Q 008788 521 ALS 523 (553)
Q Consensus 521 ~l~ 523 (553)
.+.
T Consensus 206 LI~ 208 (1134)
T 3spa_A 206 ALQ 208 (1134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 380
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=33.14 E-value=67 Score=30.16 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhh-cc--CCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Q 008788 415 ELAKAKYEKVLRDFN-HV--NPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDA 476 (553)
Q Consensus 415 ~~A~~~Y~~Al~~l~-~~--~~~~~ee~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~ 476 (553)
+.|...|++|.+... .+ .|. ..++..+.+|.+..|.. +++.++|+..+.+|+.-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pT--------hPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPS--------DPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGG--------CHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC--------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456677777776543 22 232 23345566666666653 67777777777776654
No 381
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=31.80 E-value=2.4e+02 Score=29.23 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 463 CRKSIEACNKVLDANPA-------------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 463 ~~~A~~~~~~al~~dp~-------------n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|+..++.++.|+..-|. ..-|+-.+|++++..++|++|.+..+.++..
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 55667777777765552 1347888899999999999999999988863
No 382
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=31.33 E-value=1.2e+02 Score=22.34 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHH
Q 008788 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (553)
Q Consensus 393 e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~ 427 (553)
++-..-...-..|..+..+|++++|+..+.+|+..
T Consensus 12 ~~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 12 AVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33344455568899999999999999999999993
No 383
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=30.45 E-value=51 Score=22.57 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhh
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~ 429 (553)
..+.+..|.++-..+.....-.+...|++..++||++|.
T Consensus 13 ~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 13 RASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHh
Confidence 345667788888888888888899999999999988764
No 384
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=30.38 E-value=78 Score=24.60 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008788 452 NVAACLLKLGECRKSIEACNKVLDANP 478 (553)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~dp 478 (553)
.+|..++..|+++.|+.|+-+||...|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 344445555555555555555555444
No 385
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=30.22 E-value=1e+02 Score=31.35 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
+..++.-+|.+|+-+++|.+|+.+|++++.
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 456778889999999999999999999985
No 386
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=28.31 E-value=1.8e+02 Score=21.59 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=8.6
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 008788 492 MALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 492 ~~lg~~~~A~~~l~~al~ 509 (553)
-..|+|++|+..|..|++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344555555554444443
No 387
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=27.99 E-value=1.1e+02 Score=31.16 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
+..++.-+|.+|+-+++|.+|+..|++++.
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 456778889999999999999999999985
No 388
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=27.91 E-value=85 Score=24.38 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHh
Q 008788 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428 (553)
Q Consensus 390 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l 428 (553)
+.+++-..-...-..|..+..+|+++.|+..+.+|+.++
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 455555566667789999999999999999999999854
No 389
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=27.79 E-value=1.9e+02 Score=29.58 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=34.4
Q ss_pred HH-HHHHHHHHHHhh-CC--------CCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHH
Q 008788 463 CR-KSIEACNKVLDA-NP--------AHVKGLYRRGMAYMALG---------EFEEAQRDFEMMMK 509 (553)
Q Consensus 463 ~~-~A~~~~~~al~~-dp--------~n~ka~~r~g~a~~~lg---------~~~~A~~~l~~al~ 509 (553)
|+ ..+.+++.|+.. -| +..-|+-.+|++|+..+ +|++|.+..++++.
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 55 567777888775 33 22446777888888877 88999888888876
No 390
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=27.36 E-value=2.8e+02 Score=27.44 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008788 482 KGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (553)
Q Consensus 482 ka~~r~g~a~~~lg~~~~A~~~l~~al~ 509 (553)
.|+|+.|..+...+++-+|+..|+.|.+
T Consensus 258 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 285 (392)
T 1zb1_A 258 LSAYYHGLHLEEENRVGEAIAFLDFSMQ 285 (392)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 3677788888888888888888887764
No 391
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.59 E-value=1.5e+02 Score=26.46 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008788 485 YRRGMAYMALGEFEEAQRDFEMMMKV 510 (553)
Q Consensus 485 ~r~g~a~~~lg~~~~A~~~l~~al~l 510 (553)
|.+|+.++..++|.+|.++|..|++.
T Consensus 18 YYlGr~~~~~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 18 YYVGRKAMFDSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 392
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.47 E-value=1.5e+02 Score=31.83 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 008788 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (553)
Q Consensus 480 n~ka~~r~g~a~~~lg~~~~A~~~l~~al~l~P~~~~~~~~~l~~l~~~~ 529 (553)
-..+...+|+..+..|+|..|.+.+..++..+|+|. +++.++..+-+++
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~-~a~~l~a~~~~~l 496 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR-AARELQADALEQL 496 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHH
Confidence 456788899999999999999999999999999984 5776666554444
No 393
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=25.76 E-value=1.1e+02 Score=31.24 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
+..++.-+|.+|+-+++|.+|+.+|++++..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4567788899999999999999999999964
No 394
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.05 E-value=2.2e+02 Score=32.10 Aligned_cols=65 Identities=9% Similarity=-0.054 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---------------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008788 450 HLNVAACLLKLGECRKSIEACNKVLDA---------------------NPAH--VKGLYRRGMAYMALGEFEEAQRDFEM 506 (553)
Q Consensus 450 ~~nla~~~~kl~~~~~A~~~~~~al~~---------------------dp~n--~ka~~r~g~a~~~lg~~~~A~~~l~~ 506 (553)
-+-+|.||+.+|++++|..++.+|-.- .+.. ..-|+.....+...+-|+.+++.-+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 356899999999999999999875421 0111 12344457777788999999999999
Q ss_pred HHHhCCCC
Q 008788 507 MMKVDKSS 514 (553)
Q Consensus 507 al~l~P~~ 514 (553)
|++.-..+
T Consensus 923 AI~~~~~d 930 (950)
T 4gq2_M 923 ADASKETD 930 (950)
T ss_dssp HHHTCCSC
T ss_pred HHhhcccC
Confidence 99864433
No 395
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=24.64 E-value=1.7e+02 Score=32.59 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=46.0
Q ss_pred CCCCCCEEEEEEEEEec-CCc-------------------------------EEEeccccCCCCCcceEEEcCCCccchh
Q 008788 44 TPSDGDQVAYHCTVRTL-DGV-------------------------------IVESTRSEYGGKGIPIRHVLGKSKILLG 91 (553)
Q Consensus 44 ~~~~gd~V~v~y~~~~~-~g~-------------------------------~~~st~~~~~~~~~p~~~~~G~~~~~~g 91 (553)
.+..|+.|.|.|+..+. +|+ .++| ..-+.|.+|.+.+.+-
T Consensus 560 ~i~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ies--------~~e~~fe~g~g~~~~~ 631 (950)
T 3htx_A 560 SITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVEPIES--------NEEIEFEVGTGSMNPH 631 (950)
T ss_dssp CCCTTEEEEEEEEEEEEECC----------------------------CCCEEEEE--------EEEEEEEETTTCBCHH
T ss_pred ccCCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhhcccc--------cHHHHHHHhcCCccch
Confidence 35889999999999873 331 1222 2348899999999999
Q ss_pred HHhhcCCCCCCcEEEEEEc
Q 008788 92 LLEGIPTMLKGEVSMFKMK 110 (553)
Q Consensus 92 ~~~~l~~m~~G~~~~~~ip 110 (553)
++..+..|..|+...|..-
T Consensus 632 le~vV~qms~gqT~~F~~~ 650 (950)
T 3htx_A 632 IESEVTQMTVGEYASFKMT 650 (950)
T ss_dssp HHHHHTTCCTTCEEEEEES
T ss_pred hhheeeeccccceeEEecc
Confidence 9999999999999888743
No 396
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=24.03 E-value=1.1e+02 Score=30.96 Aligned_cols=95 Identities=5% Similarity=-0.024 Sum_probs=51.7
Q ss_pred HHHhhhccccccCCHHHHHHHHHHHHHHhhccCCCC------h--h-HHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008788 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD------D--E-EGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (553)
Q Consensus 400 ~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~~~~~------~--e-e~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 470 (553)
-+...++.+...++|.+|.-++.-..+.+. .++.. . . ........+..++...+..+.+-+.|+.|+..|
T Consensus 37 ~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~-w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~ 115 (436)
T 2yin_A 37 YLYKLRDLHLDCDNYTEAAYTLLLHTWLLK-WSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLC 115 (436)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-SSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHhC-CCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345667888899999999998865544322 11110 0 0 000011122345555555666667788888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcC
Q 008788 471 NKVLDANPAHVKGLYRRGMAYMALG 495 (553)
Q Consensus 471 ~~al~~dp~n~ka~~r~g~a~~~lg 495 (553)
+.++..-..+..-|-.++.+|..+.
T Consensus 116 k~L~~~yE~~~~Dy~~Ls~~~~~~a 140 (436)
T 2yin_A 116 KELAEQYEMEIFDYELLSQNLIQQA 140 (436)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777544333233444555555543
No 397
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.00 E-value=18 Score=37.05 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhhcc
Q 008788 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (553)
Q Consensus 394 ~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~~ 431 (553)
.++.|..+-.+|..+-+.|+|++|+.+|..|+++|...
T Consensus 7 ~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~ 44 (444)
T 2zan_A 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 44 (444)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45567777888888999999999999999999987653
No 398
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=22.64 E-value=1e+02 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008788 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (553)
Q Consensus 445 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~ 476 (553)
.+..++.-+|.+|+-+++|.+|+.+|++++..
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34567788899999999999999999999853
No 399
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=22.58 E-value=4.2e+02 Score=23.80 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC----hHHHHH
Q 008788 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL--GEFEEAQRDFEMMMKVDKSS----EPDATA 520 (553)
Q Consensus 447 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~l--g~~~~A~~~l~~al~l~P~~----~~~~~~ 520 (553)
...+..+..+++. .+-..|+..|..||..+|.|+.-.+..-+.|.+. .+-.-.+..|+.+...||.. ...+..
T Consensus 93 ~etH~~RV~a~Ln-~rrr~Ale~y~~ALq~~pP~~~~vl~aLk~yirae~KDR~Htl~hf~Hv~~~dpe~A~~~k~~vl~ 171 (219)
T 3pmr_A 93 VETHATRVIALIN-DQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVHT 171 (219)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHHhhcchHHHH
Confidence 4455555544433 4568899999999999998887766665555543 34445788999999999852 223445
Q ss_pred HHHHHHHHHHHH
Q 008788 521 ALSKLKKQRRKL 532 (553)
Q Consensus 521 ~l~~l~~~~~~~ 532 (553)
.|..+..++++.
T Consensus 172 hL~~Id~r~NqS 183 (219)
T 3pmr_A 172 HLQVIEERVNQS 183 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 556666555443
No 400
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=22.20 E-value=2e+02 Score=29.36 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC----------------------------HHH
Q 008788 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------------------------CRK 465 (553)
Q Consensus 414 ~~~A~~~Y~~Al~~l~~~~~~~~ee~~~~~~~~~~~~~nla~~~~kl~~----------------------------~~~ 465 (553)
+-..+...+.+|+.+.......+++.+ ......+++-+|.+|+.+-+ |+.
T Consensus 79 ~Y~~I~~~N~~i~~~~~~~~~~~~~~~--~~~~aEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~ 156 (481)
T 3jq1_A 79 FYNALYRTNSIMQKLEEKKEQFSTDFQ--NSVKGECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQ 156 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHHHHHHHHHHHHSSEECCCCCCSSCCCSCCCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhCCeeeeccCCCCccccccCCCCHHHHHHH
Q ss_pred HHHHHHHHHhhCCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008788 466 SIEACNKVLDANPAHVK--------GLYRRGMAYMALGEFEEAQRDFEMMM 508 (553)
Q Consensus 466 A~~~~~~al~~dp~n~k--------a~~r~g~a~~~lg~~~~A~~~l~~al 508 (553)
.+++++.|+..-|.... |+-.+|++|+..++|++|++..++++
T Consensus 157 I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi 207 (481)
T 3jq1_A 157 AKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLT 207 (481)
T ss_dssp HHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 401
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.96 E-value=1.5e+02 Score=30.06 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008788 446 RNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (553)
Q Consensus 446 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~ 475 (553)
+..++.-+|.+|+-+++|.+|+.++++++.
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456788889999999999999999999984
No 402
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.15 E-value=2.5e+02 Score=24.96 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 008788 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496 (553)
Q Consensus 452 nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~ 496 (553)
..-+++++.|.|++|.+.+.+.+.-++.|.+.-..+..+-...+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 344566788999999999999888887777654444444333333
No 403
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=20.73 E-value=1.2e+02 Score=23.16 Aligned_cols=38 Identities=8% Similarity=0.004 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHh
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l 428 (553)
.++.++.|..+.+.|..+++.|++..|+.++.=|--+|
T Consensus 32 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwL 69 (87)
T 2pmr_A 32 EEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHGLL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999988877665543
No 404
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=20.64 E-value=1.1e+02 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHhh
Q 008788 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (553)
Q Consensus 391 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~ 429 (553)
.++.++.|..+.+.|..+++.|++..|+.++.=|--+|+
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwLD 66 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWLE 66 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999998777655443
No 405
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=25.93 E-value=21 Score=38.60 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008788 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500 (553)
Q Consensus 448 ~~~~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~~~A 500 (553)
...+..|..++..|+|.-|.+.++.++..+|+|..|...++.+|.++|.-.+.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 34566788888899999999999999999999999999999999999975543
No 406
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.25 E-value=1.2e+02 Score=27.48 Aligned_cols=43 Identities=14% Similarity=-0.035 Sum_probs=30.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 008788 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496 (553)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~ 496 (553)
-+++++.|.|++|.+.+.+.+.-++.+-+.-..+..+-...+.
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 3455688889999999988888777776665555555444443
No 407
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=20.07 E-value=1.1e+02 Score=30.91 Aligned_cols=98 Identities=14% Similarity=0.024 Sum_probs=54.2
Q ss_pred HHHHhhhccccccCCHHHHHHHHHHHHHHhhc------cCCCChhH-----------HHH-----------HhhhhhHHH
Q 008788 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH------VNPQDDEE-----------GKV-----------FVGKRNLLH 450 (553)
Q Consensus 399 ~~~k~~G~~~~~~g~~~~A~~~Y~~Al~~l~~------~~~~~~ee-----------~~~-----------~~~~~~~~~ 450 (553)
.-+...++.+.+.++|.+|.-++..+..++-. ..+++... ... -......++
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll 91 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELL 91 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHH
Confidence 34556777788999999999998754432211 12222110 000 011112244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008788 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (553)
Q Consensus 451 ~nla~~~~kl~~~~~A~~~~~~al~~dp~n~ka~~r~g~a~~~lg~~ 497 (553)
...+.++.+-+.|+.|+..|+.++..-..+ .-|-.++.+|..+.++
T Consensus 92 ~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~-~dy~~Ls~~~~~~a~~ 137 (428)
T 2wm9_A 92 EQCADGLWKAERYELIADIYKLIIPIYEKR-RDFERLAHLYDTLHRA 137 (428)
T ss_dssp HHHHHHHHHTTCGGGHHHHHTTTHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 444455556677888998888877553322 3455567776666443
Done!