Query 008789
Match_columns 553
No_of_seqs 363 out of 2343
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 16:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02669 Peptidase_C19M A subfa 100.0 1.3E-78 2.9E-83 632.4 35.8 409 44-522 4-440 (440)
2 KOG0944 Ubiquitin-specific pro 100.0 5.7E-76 1.2E-80 591.1 25.6 428 50-524 176-762 (763)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 2.8E-67 6.1E-72 524.1 24.2 301 179-524 108-410 (545)
4 COG5207 UBP14 Isopeptidase T [ 100.0 5E-65 1.1E-69 495.4 20.5 436 43-523 163-748 (749)
5 cd02660 Peptidase_C19D A subfa 100.0 2.3E-62 5E-67 497.0 29.8 326 180-522 1-328 (328)
6 cd02663 Peptidase_C19G A subfa 100.0 1.5E-62 3.3E-67 490.4 26.1 280 181-522 1-300 (300)
7 cd02668 Peptidase_C19L A subfa 100.0 3.4E-61 7.4E-66 485.9 28.0 295 181-522 1-324 (324)
8 KOG1873 Ubiquitin-specific pro 100.0 2.1E-63 4.5E-68 504.9 11.0 432 63-524 90-877 (877)
9 cd02671 Peptidase_C19O A subfa 100.0 7.1E-61 1.5E-65 480.1 28.5 302 172-522 17-332 (332)
10 cd02664 Peptidase_C19H A subfa 100.0 3E-60 6.5E-65 478.6 25.7 294 181-522 1-327 (327)
11 cd02667 Peptidase_C19K A subfa 100.0 2.5E-60 5.4E-65 469.1 23.8 256 181-522 1-279 (279)
12 cd02658 Peptidase_C19B A subfa 100.0 8.2E-59 1.8E-63 467.1 29.0 292 181-522 1-311 (311)
13 cd02657 Peptidase_C19A A subfa 100.0 9E-59 2E-63 465.7 26.0 288 181-522 1-305 (305)
14 cd02661 Peptidase_C19E A subfa 100.0 1.3E-58 2.8E-63 465.1 27.0 298 180-522 2-304 (304)
15 cd02659 peptidase_C19C A subfa 100.0 1.7E-58 3.6E-63 469.9 28.1 309 178-525 1-333 (334)
16 KOG1867 Ubiquitin-specific pro 100.0 1.8E-58 4E-63 475.9 20.6 445 47-530 37-490 (492)
17 COG5560 UBP12 Ubiquitin C-term 100.0 5.8E-58 1.3E-62 457.1 13.7 330 177-525 263-823 (823)
18 COG5533 UBP5 Ubiquitin C-termi 100.0 1.4E-54 3.1E-59 399.2 19.3 314 179-524 71-414 (415)
19 cd02662 Peptidase_C19F A subfa 100.0 1.5E-52 3.2E-57 403.9 21.4 216 181-522 1-240 (240)
20 KOG1866 Ubiquitin carboxyl-ter 100.0 3.6E-51 7.7E-56 414.5 5.5 323 173-526 89-436 (944)
21 KOG1868 Ubiquitin C-terminal h 100.0 3.8E-50 8.2E-55 420.7 13.2 322 174-528 296-650 (653)
22 cd02674 Peptidase_C19R A subfa 100.0 4.8E-49 1E-53 379.1 19.4 227 181-522 1-230 (230)
23 KOG2026 Spindle pole body prot 100.0 5E-47 1.1E-51 359.5 16.7 408 44-524 17-441 (442)
24 cd02673 Peptidase_C19Q A subfa 100.0 2.5E-46 5.4E-51 358.1 19.0 235 182-522 2-245 (245)
25 cd02665 Peptidase_C19I A subfa 100.0 3.1E-46 6.7E-51 349.9 17.0 218 181-522 1-228 (228)
26 COG5077 Ubiquitin carboxyl-ter 100.0 1.5E-47 3.2E-52 388.7 8.4 305 173-528 187-515 (1089)
27 cd02666 Peptidase_C19J A subfa 100.0 2.3E-46 5E-51 374.2 15.0 299 180-522 2-343 (343)
28 PF00443 UCH: Ubiquitin carbox 100.0 1.9E-45 4E-50 362.0 16.5 257 179-521 1-269 (269)
29 cd02257 Peptidase_C19 Peptidas 100.0 1.4E-41 3.1E-46 330.7 20.2 245 181-522 1-255 (255)
30 KOG1870 Ubiquitin C-terminal h 100.0 6.5E-42 1.4E-46 378.4 16.2 332 173-525 240-842 (842)
31 cd02672 Peptidase_C19P A subfa 100.0 3.3E-41 7.1E-46 327.2 11.9 240 177-522 13-268 (268)
32 KOG4598 Putative ubiquitin-spe 100.0 2.7E-41 5.9E-46 339.5 2.9 299 173-526 81-443 (1203)
33 KOG1863 Ubiquitin carboxyl-ter 100.0 6.1E-39 1.3E-43 363.3 14.2 305 174-526 164-487 (1093)
34 PF13423 UCH_1: Ubiquitin carb 100.0 3.8E-35 8.2E-40 292.1 21.2 284 180-503 1-295 (295)
35 cd02670 Peptidase_C19N A subfa 100.0 3.1E-35 6.7E-40 278.0 14.9 195 267-522 22-241 (241)
36 KOG1864 Ubiquitin-specific pro 100.0 6.1E-35 1.3E-39 306.0 14.4 312 176-525 229-573 (587)
37 KOG1871 Ubiquitin-specific pro 100.0 8.2E-31 1.8E-35 250.6 11.3 311 177-525 26-420 (420)
38 KOG1872 Ubiquitin-specific pro 100.0 1.3E-30 2.8E-35 256.1 6.9 316 180-526 106-471 (473)
39 KOG1275 PAB-dependent poly(A) 99.8 7E-20 1.5E-24 191.3 14.2 320 179-521 499-860 (1118)
40 PF02148 zf-UBP: Zn-finger in 99.7 7.4E-18 1.6E-22 125.2 4.4 59 56-115 1-63 (63)
41 KOG0804 Cytoplasmic Zn-finger 99.1 4.3E-11 9.4E-16 117.5 3.7 57 54-112 229-289 (493)
42 smart00290 ZnF_UBP Ubiquitin C 98.9 9.2E-10 2E-14 77.9 4.1 45 55-101 1-49 (50)
43 PF15499 Peptidase_C98: Ubiqui 98.4 7.1E-06 1.5E-10 76.0 14.7 146 301-522 121-275 (275)
44 KOG1864 Ubiquitin-specific pro 97.3 0.00033 7E-09 75.1 5.7 106 182-287 34-153 (587)
45 PF08715 Viral_protease: Papai 96.9 0.011 2.4E-07 58.4 12.0 79 177-284 100-179 (320)
46 KOG3556 Familial cylindromatos 96.5 0.0021 4.5E-08 65.3 3.5 28 179-206 368-395 (724)
47 PF05408 Peptidase_C28: Foot-a 93.4 0.039 8.4E-07 48.9 1.5 42 480-526 136-177 (193)
48 KOG1887 Ubiquitin carboxyl-ter 93.2 0.019 4E-07 62.2 -1.0 213 267-524 548-790 (806)
49 PF09416 UPF1_Zn_bind: RNA hel 88.8 0.34 7.3E-06 42.1 2.6 55 55-110 2-69 (152)
50 PF05408 Peptidase_C28: Foot-a 87.4 0.72 1.6E-05 41.1 3.8 31 178-208 32-64 (193)
51 KOG0944 Ubiquitin-specific pro 80.5 1.3 2.9E-05 47.3 2.9 48 52-100 23-73 (763)
52 COG3478 Predicted nucleic-acid 66.2 5.8 0.00013 28.8 2.4 37 380-416 3-41 (68)
53 COG5207 UBP14 Isopeptidase T [ 65.7 1.6 3.4E-05 45.2 -0.8 43 55-97 24-73 (749)
54 PF01473 CW_binding_1: Putativ 63.2 8 0.00017 20.7 2.1 15 487-501 2-16 (19)
55 smart00154 ZnF_AN1 AN1-like Zi 61.0 5.4 0.00012 26.2 1.4 27 56-82 1-28 (39)
56 cd00729 rubredoxin_SM Rubredox 54.7 6.5 0.00014 24.9 0.9 13 66-78 2-14 (34)
57 PF13923 zf-C3HC4_2: Zinc fing 53.8 8.5 0.00018 25.0 1.4 31 56-86 1-31 (39)
58 PRK14890 putative Zn-ribbon RN 52.8 5.8 0.00013 28.4 0.5 23 53-76 36-58 (59)
59 COG2888 Predicted Zn-ribbon RN 50.5 6.3 0.00014 28.2 0.4 25 51-76 36-60 (61)
60 PF02099 Josephin: Josephin; 48.4 22 0.00047 31.6 3.6 32 470-505 99-130 (157)
61 PHA00616 hypothetical protein 47.9 5.5 0.00012 26.9 -0.2 19 67-85 2-21 (44)
62 PF14353 CpXC: CpXC protein 46.6 23 0.00049 30.2 3.4 12 381-392 38-49 (128)
63 PRK12286 rpmF 50S ribosomal pr 44.3 19 0.00042 25.8 2.1 26 51-76 25-50 (57)
64 KOG1802 RNA helicase nonsense 43.6 22 0.00047 38.7 3.2 59 51-110 58-129 (935)
65 cd00350 rubredoxin_like Rubred 41.8 12 0.00027 23.4 0.7 12 66-77 1-12 (33)
66 COG4855 Uncharacterized protei 41.2 9.6 0.00021 27.8 0.2 31 53-83 7-40 (76)
67 TIGR01031 rpmF_bact ribosomal 39.8 23 0.00049 25.3 1.9 24 52-75 25-48 (55)
68 PF01428 zf-AN1: AN1-like Zinc 39.1 16 0.00035 24.4 1.0 24 59-82 6-29 (43)
69 KOG3362 Predicted BBOX Zn-fing 38.6 14 0.0003 31.6 0.8 34 51-86 116-150 (156)
70 PF00096 zf-C2H2: Zinc finger, 35.7 28 0.0006 19.2 1.5 12 67-78 1-12 (23)
71 PF09855 DUF2082: Nucleic-acid 35.1 30 0.00065 25.5 2.0 34 382-415 1-36 (64)
72 PF03292 Pox_P4B: Poxvirus P4B 35.1 56 0.0012 35.1 4.6 44 464-508 520-575 (666)
73 KOG2935 Ataxin 3/Josephin [Gen 33.8 8.5 0.00018 36.2 -1.3 60 471-534 104-171 (315)
74 PF10571 UPF0547: Uncharacteri 33.7 24 0.00052 20.8 1.0 22 55-76 2-24 (26)
75 KOG0317 Predicted E3 ubiquitin 33.2 19 0.00041 34.8 0.8 36 54-90 240-275 (293)
76 PHA00626 hypothetical protein 33.0 26 0.00056 24.8 1.2 23 55-78 13-35 (59)
77 KOG0823 Predicted E3 ubiquitin 31.9 39 0.00085 31.7 2.6 49 55-115 49-98 (230)
78 COG0333 RpmF Ribosomal protein 31.6 35 0.00076 24.5 1.8 23 53-75 27-49 (57)
79 PF14369 zf-RING_3: zinc-finge 31.3 31 0.00067 22.0 1.3 13 101-113 2-14 (35)
80 PF09947 DUF2180: Uncharacteri 31.3 22 0.00047 26.5 0.7 29 55-83 2-33 (68)
81 KOG2906 RNA polymerase III sub 29.1 97 0.0021 24.8 3.9 20 382-401 66-85 (105)
82 PF13842 Tnp_zf-ribbon_2: DDE_ 28.1 46 0.001 20.7 1.7 26 55-80 2-30 (32)
83 PF13894 zf-C2H2_4: C2H2-type 27.1 46 0.001 18.1 1.5 12 67-78 1-12 (24)
84 PF15616 TerY-C: TerY-C metal 26.5 50 0.0011 28.2 2.2 25 52-78 76-100 (131)
85 PLN03119 putative ADP-ribosyla 26.2 46 0.00099 35.5 2.2 44 55-103 25-68 (648)
86 PF08274 PhnA_Zn_Ribbon: PhnA 26.0 32 0.00068 21.1 0.6 21 54-74 3-27 (30)
87 PF11164 DUF2948: Protein of u 24.6 2.5E+02 0.0054 24.3 6.0 70 401-487 32-104 (138)
88 COG5574 PEX10 RING-finger-cont 24.4 27 0.00059 33.3 0.2 26 55-81 217-242 (271)
89 KOG1867 Ubiquitin-specific pro 22.6 31 0.00067 36.9 0.2 25 259-283 157-181 (492)
90 PF01927 Mut7-C: Mut7-C RNAse 22.5 1E+02 0.0022 26.9 3.5 13 65-77 123-135 (147)
91 KOG0826 Predicted E3 ubiquitin 22.1 44 0.00095 33.0 1.1 42 50-92 297-338 (357)
92 PF14803 Nudix_N_2: Nudix N-te 22.0 65 0.0014 20.4 1.5 13 64-76 20-32 (34)
93 KOG2932 E3 ubiquitin ligase in 21.6 39 0.00084 33.0 0.7 43 54-112 91-134 (389)
94 PF07649 C1_3: C1-like domain; 21.3 65 0.0014 19.5 1.4 22 55-76 2-25 (30)
95 PF01783 Ribosomal_L32p: Ribos 20.8 30 0.00064 24.7 -0.2 24 52-75 25-48 (56)
96 COG1592 Rubrerythrin [Energy p 20.4 50 0.0011 29.5 1.1 13 66-78 134-146 (166)
97 cd04474 RPA1_DBD_A RPA1_DBD_A: 20.1 4.7E+02 0.01 21.1 6.8 32 492-523 67-98 (104)
98 smart00460 TGc Transglutaminas 20.1 1E+02 0.0022 22.2 2.7 21 480-500 46-66 (68)
No 1
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-78 Score=632.44 Aligned_cols=409 Identities=23% Similarity=0.381 Sum_probs=322.2
Q ss_pred ccccccCCCCCCCCccC--CCCCCeEEecccCCcccc----hhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeCCChh
Q 008789 44 SSVKNHQTEIPRCCFCN--GYQKRLYLCLICSSISCS----SHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFD 117 (553)
Q Consensus 44 ~~~~~~~~~~~~c~~C~--~~~~~~~~Cl~Cg~~~c~----~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~~~~ 117 (553)
.+++|..++|++.+.|. .+..|+|+||+||+++|| +||+.|+. +++|++||+++|+.||||+|+++|+|+.++
T Consensus 4 ~ti~r~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~-~~~H~~~v~l~t~~~yc~~~~~~v~d~~l~ 82 (440)
T cd02669 4 DTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSL-EDNHHVFLNLETLKFYCLPDNYEIIDSSLD 82 (440)
T ss_pred hhhhhhhccccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhh-ccCCCEEEECCCCCEEEeCCCCEEeCccHH
Confidence 46888999999877773 356788999999966554 89999998 799999999999999999999999999988
Q ss_pred hHHHHhhhhccCCCCCCCCCccccccccccccchhhhhhhhhhhhhhhccccccccCCCCcccccccCCCcchhHHHHHH
Q 008789 118 KIVMLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLGLRGLNNLGSTCFMNSVLQA 197 (553)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNtCY~NsvLQ~ 197 (553)
+++... .+.++ ++... +++.+ ..+ .. ......+.||++||.|+|||||||||||+
T Consensus 83 ~i~~~~------~~~~~----------~~~i~----~~~~~--~~~--~~-~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~ 137 (440)
T cd02669 83 DIKYVL------NPTYT----------KEQIS----DLDRD--PKL--SR-DLDGKPYLPGFVGLNNIKNNDYANVIIQA 137 (440)
T ss_pred HHHHHh------cCCCC----------HHHHH----Hhhhc--ccc--cc-ccCCCCccCCccCccCCCCchHHHHHHHH
Confidence 765221 11111 11000 11111 011 01 11235678999999999999999999999
Q ss_pred HhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC--CCccChHHHHHHHHhcc-CCCCCCCcCCHHHH
Q 008789 198 LLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD--RTPYSPAQLLYSWWQHS-ANLASYEQQDAHEF 274 (553)
Q Consensus 198 L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~i~p~~~l~~l~~~~-~~f~~~~QqDA~Ef 274 (553)
|+++|+||++++...+.... .....++.++|..+++.+|++. +.+++|.+|+++++... +.|.+++||||+||
T Consensus 138 L~~~p~lr~~~l~~~~~~~~----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EF 213 (440)
T cd02669 138 LSHVKPIRNFFLLYENYENI----KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEF 213 (440)
T ss_pred HHCCHHHHHHHhhccccccc----cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHH
Confidence 99999999999986543211 1124479999999999999875 57899999999998765 56889999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCC---------------CccccccCceeeeccCCC
Q 008789 275 FISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCG---------------YTSTTYDPFMDISLNLDT 339 (553)
Q Consensus 275 l~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~---------------~~s~~~e~f~~LsL~i~~ 339 (553)
|.+|||.||++..... ....++|+++|+|+++++++|..|. ..+++.+||++|+|+||.
T Consensus 214 l~~LLd~L~~~l~~~~------~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~ 287 (440)
T cd02669 214 LSWLLNTLHKDLGGSK------KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPP 287 (440)
T ss_pred HHHHHHHHHHHhccCC------CCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCC
Confidence 9999999999865431 1234799999999999999987654 245678999999999997
Q ss_pred CCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCc
Q 008789 340 GNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVR 419 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~ 419 (553)
.+..... . .....+..+|+++|+. |.|+.|...+.++|+++|.+||+||+||||||.++ .
T Consensus 288 ~~~~~~~-~-----~~~~l~~~~l~e~L~k------------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~--~ 347 (440)
T cd02669 288 PPLFKDG-N-----EENIIPQVPLKQLLKK------------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKN--N 347 (440)
T ss_pred Ccccccc-c-----cccccCcccHHHHHHh------------cCCccceecccceEEEEEeeCCcEEEEEEecccCC--C
Confidence 5411100 0 0111134588888865 55677888888999999999999999999999987 3
Q ss_pred ccccccccccccCcc-cCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccC-CCCCeEEEEec--CCcE
Q 008789 420 RMSRKIDRYMQFPFC-LDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTL-DSGHYVTYLHL--KDQW 495 (553)
Q Consensus 420 ~~~~Ki~~~V~fP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~-~~GHY~a~vr~--~~~W 495 (553)
....|+++.|.||.. |||++|+..+. ........|+|+|||+|.|+. ++|||+||+|+ +++|
T Consensus 348 ~~~~K~~t~V~FP~~~LDm~~y~~~~~--------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W 413 (440)
T cd02669 348 FFKEKNPTIVNFPIKNLDLSDYVHFDK--------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKW 413 (440)
T ss_pred CccccCCCEEECCCCccchhhhhCccc--------------cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeE
Confidence 567899999999996 89999987421 123456899999999999996 99999999986 6899
Q ss_pred EEEcCcceEEeccccccCCCceEEEEE
Q 008789 496 YKCDDAWITAVEEEVVRASQCYMLFYA 522 (553)
Q Consensus 496 ~~~nD~~V~~v~~~~v~~~~aYlLfY~ 522 (553)
|+|||+.|+++++++|+.++||||||+
T Consensus 414 ~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 414 FEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEECCeeeEcCHHHhccCCceEEEeC
Confidence 999999999999999999999999996
No 2
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-76 Score=591.08 Aligned_cols=428 Identities=24% Similarity=0.459 Sum_probs=355.4
Q ss_pred CCCCCCCCccCCCCCCeEEecccCCcccc----------hhHHhhhcCCCCCeEEEECC-----CCcEEEcCCCCEEeCC
Q 008789 50 QTEIPRCCFCNGYQKRLYLCLICSSISCS----------SHTLLHSQCENGHDIAVDIE-----RSELYCVLCCDQVYDP 114 (553)
Q Consensus 50 ~~~~~~c~~C~~~~~~~~~Cl~Cg~~~c~----------~h~~~H~~~~~~H~~~~~~~-----~~~~~c~~c~~~v~d~ 114 (553)
+...+.|+.|.+ ..|||+||+||.++|| +||..||. +++|||||.|+ ..+||||.||++|.||
T Consensus 176 ~~~gwkCs~CDL-~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr-~tghPLaVKLgsIs~dg~DvycY~cDd~v~dP 253 (763)
T KOG0944|consen 176 PPSGWKCSKCDL-TENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYR-ETGHPLAVKLGSISPDGADVYCYDCDDEVRDP 253 (763)
T ss_pred CCCcceecccCc-ccceEEEeccCceeecceeecCCCCCcchHHhhh-hcCCceEEEecccCCCccceeeecccccccCc
Confidence 344558999996 6899999999999997 89999999 79999999994 4899999999999999
Q ss_pred ChhhHHHHhhhhccCCCCCCCCCccccccccccccchhhhhhhhhhhhhhhccccccccCCCCcccccccCCCcchhHHH
Q 008789 115 DFDKIVMLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLGLRGLNNLGSTCFMNSV 194 (553)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNtCY~Nsv 194 (553)
. +.+|+.+++++... ...+++...+..++++...++....+.+...++.++||++||+|+||+||||||
T Consensus 254 n-----l~~hl~hfGId~~~------m~kteksl~elel~~N~i~Ew~~~~esg~~l~p~~gpgytGl~NlGNSCYlnSV 322 (763)
T KOG0944|consen 254 N-----LESHLSHFGIDMAK------MDKTEKSLVELELDQNRIWEWEALEESGAPLEPLFGPGYTGLINLGNSCYLNSV 322 (763)
T ss_pred c-----HHHHHHhcCccHHH------hccchhHHHHHHHHhhcccCceeeccCCCccccccCCCccceeecCcchhHHHH
Confidence 8 45889999887643 344455555666666555667777777777788999999999999999999999
Q ss_pred HHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC----------CCccChHHHHHHHHhccCCCC
Q 008789 195 LQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD----------RTPYSPAQLLYSWWQHSANLA 264 (553)
Q Consensus 195 LQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~----------~~~i~p~~~l~~l~~~~~~f~ 264 (553)
+|+|+.+|.|...++.. .....+.. ..|..+|.|++.+|...|.+++ .+.|+|.+|+..+|+.+++|.
T Consensus 323 mQ~Lf~i~~fq~~~~~~-~~~f~~~~-~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFs 400 (763)
T KOG0944|consen 323 MQSLFSIPSFQRRYLEQ-ERIFNCYP-KDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFS 400 (763)
T ss_pred HHHheecccHHHhhccc-cceeecCC-CCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCcccc
Confidence 99999999999998876 33333333 5678899999999999999875 247999999999999999999
Q ss_pred CCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCCCCCC
Q 008789 265 SYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPS 344 (553)
Q Consensus 265 ~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~ 344 (553)
+.+||||+|||++||+.|.+...... ..+.++|++.++.++.|..|++++++.++...|.|+||...
T Consensus 401 t~~QQDA~EFllfLl~ki~~n~rs~~----------~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~--- 467 (763)
T KOG0944|consen 401 TNRQQDAQEFLLFLLEKIRENSRSSL----------PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTN--- 467 (763)
T ss_pred chhhhhHHHHHHHHHHHHhhcccccC----------CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccc---
Confidence 99999999999999999987644321 25778999999999999999999999999999999998622
Q ss_pred cccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCcccccc
Q 008789 345 TDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRK 424 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~K 424 (553)
..+..+++.+||++|+.+ .++ +++|..|+.+..|+|..+|+++|+||+||++||.+. ++..+|
T Consensus 468 -----------~v~~~v~~~~cleaff~p-q~~---df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~--dw~pkK 530 (763)
T KOG0944|consen 468 -----------EVREKVPISACLEAFFEP-QVD---DFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQ--DWVPKK 530 (763)
T ss_pred -----------cccccCCHHHHHHHhcCC-cch---hhhhHhhcCccccccccccccCCceEEEEeeEEEec--Cceeee
Confidence 134567999999999999 433 499999999999999999999999999999999995 899999
Q ss_pred cccccccCcccCCCcccccccccccc---------------------------------------CCc------------
Q 008789 425 IDRYMQFPFCLDMNPYLSSSVVRNRF---------------------------------------GNR------------ 453 (553)
Q Consensus 425 i~~~V~fP~~Ldl~~~~~~~~~~~~~---------------------------------------~~~------------ 453 (553)
++..+++|+.||++.|...+...... ++.
T Consensus 531 ld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~H 610 (763)
T KOG0944|consen 531 LDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEH 610 (763)
T ss_pred eccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHh
Confidence 99999999999999998876210000 000
Q ss_pred -----------------------cc-------------------------------------------------------
Q 008789 454 -----------------------MF------------------------------------------------------- 455 (553)
Q Consensus 454 -----------------------~~------------------------------------------------------- 455 (553)
..
T Consensus 611 MdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~ 690 (763)
T KOG0944|consen 611 MDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAI 690 (763)
T ss_pred ccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcc
Confidence 00
Q ss_pred ----ccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEecCCcEEEEcCcceEEeccccccCCCceEEEEEEe
Q 008789 456 ----AFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQK 524 (553)
Q Consensus 456 ----~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~ 524 (553)
...+...+.+.+|.|+|+|+|.|+ +.+|||+|++|..|+|+.|||++|- ..++--...+||+||+|-
T Consensus 691 ~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 691 ESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA--ASQEPPKDLGYVYLYTRI 762 (763)
T ss_pred hhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh--hccCChhhcceEEEEEec
Confidence 000112456778999999999999 9999999999999999999999997 223334678999999984
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-67 Score=524.12 Aligned_cols=301 Identities=37% Similarity=0.717 Sum_probs=272.8
Q ss_pred ccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHh
Q 008789 179 LRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQ 258 (553)
Q Consensus 179 ~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~ 258 (553)
-.||.|+|||||+|||||||.++|+|.+||+...|... |. ....|++|+|+..+.........+++|..|+..|..
T Consensus 108 ~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~-C~---~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~~ 183 (545)
T KOG1865|consen 108 GAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRS-CH---RAKFCMLCTFQAHITRALHNPGHPISPSQILSNLRN 183 (545)
T ss_pred CcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhh-cc---ccCeeeehHHHHHHHHHhcCCCCccChHHHHHhhhh
Confidence 35999999999999999999999999999999887754 33 237899999999999888888889999999999999
Q ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCC
Q 008789 259 HSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLD 338 (553)
Q Consensus 259 ~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~ 338 (553)
+...|..+.|+||||||++++|.|+.................+.|+++|+|.++++++|..|.+++.++|+.++|+|+|.
T Consensus 184 I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~ 263 (545)
T KOG1865|consen 184 ISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ 263 (545)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCCcccccccccceEEEec
Confidence 99999999999999999999999998754222222223334579999999999999999999999999999999999998
Q ss_pred CCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCC
Q 008789 339 TGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPV 418 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~ 418 (553)
... +|+++|+.|+..|.++|+|.|.|++|+++..|.|+++|.++|+||+||||||..
T Consensus 264 d~~--------------------sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~--- 320 (545)
T KOG1865|consen 264 DAS--------------------SLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN--- 320 (545)
T ss_pred cch--------------------hHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc---
Confidence 543 999999999999999999999999999999999999999999999999999985
Q ss_pred cccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEec-CCcEE
Q 008789 419 RRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHL-KDQWY 496 (553)
Q Consensus 419 ~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~-~~~W~ 496 (553)
+...||++.|.||+.|||.||++. ....+..|.|+|||+|.|. ..+|||++|||. +|.||
T Consensus 321 -~~~gKI~K~I~fPE~LDl~PyMS~-----------------~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy 382 (545)
T KOG1865|consen 321 -GTGGKISKPVSFPETLDLQPYMSQ-----------------PNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWY 382 (545)
T ss_pred -CcccccccccCCcccccccccccC-----------------CCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceE
Confidence 457899999999999999999984 3446789999999999999 999999999997 67999
Q ss_pred EEcCcceEEeccccccCCCceEEEEEEe
Q 008789 497 KCDDAWITAVEEEVVRASQCYMLFYAQK 524 (553)
Q Consensus 497 ~~nD~~V~~v~~~~v~~~~aYlLfY~r~ 524 (553)
.+||+.|+.++.+.|++.+||||||.|.
T Consensus 383 ~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 383 KMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred EccCceeeeccccceecccceEEEEEee
Confidence 9999999999999999999999999997
No 4
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-65 Score=495.36 Aligned_cols=436 Identities=21% Similarity=0.376 Sum_probs=332.8
Q ss_pred cccccccCCCCCCCCccCCCCCCeEEecccCCcccc---------hhHHhhhcCCCCCeEEEEC-----CCCcEEEcCCC
Q 008789 43 KSSVKNHQTEIPRCCFCNGYQKRLYLCLICSSISCS---------SHTLLHSQCENGHDIAVDI-----ERSELYCVLCC 108 (553)
Q Consensus 43 ~~~~~~~~~~~~~c~~C~~~~~~~~~Cl~Cg~~~c~---------~h~~~H~~~~~~H~~~~~~-----~~~~~~c~~c~ 108 (553)
.+++.....+...|+.|.+ ..|+|+||+||.+||| +||+.||. +++||+||.| ++.++|||.||
T Consensus 163 ~~s~~~~ni~~~~Cs~CDl-~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~-~t~Hplavkl~Sls~~~~diyCY~CD 240 (749)
T COG5207 163 PSSIEMGNIGGLKCSLCDL-KTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYE-ETQHPLAVKLPSLSKEDCDIYCYLCD 240 (749)
T ss_pred CCcccccccCCceeccccc-hhceEEEEecCcccccceeecCCCCcchhhhhh-ccCCceEEEccccccccccEEEEecC
Confidence 3455566677778999986 6899999999999997 89999998 7999999999 66899999999
Q ss_pred CEEeCCChhhHHHHhhhhccCCCCCCCCCccccccccccccchhhhhhhhhhhhhhhccccccccCCCCc-ccccccCCC
Q 008789 109 DQVYDPDFDKIVMLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLG-LRGLNNLGS 187 (553)
Q Consensus 109 ~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g-~~GL~NlGN 187 (553)
+++..+.--. ...++..+|+++.. ....+++......|.+.+.++.... .....+..+.|+ ++||.|+||
T Consensus 241 ~e~R~~~n~n--~~s~~~~fGinIa~------~~~~Eksl~~lq~eqn~nw~F~~~~-~~~~sk~~~~ps~~~GliNlGN 311 (749)
T COG5207 241 SEIRSRYNSN--ENSVTIDFGINIAD------GKTEEKSLRKLQSEQNANWEFLEKK-RAPESKGESVPSPYVGLINLGN 311 (749)
T ss_pred cccccCCccc--ccceeeeeccchhh------ccchHHHHHHHHHhhhcCcchhccc-cCchhhcccCCCCccceEecCC
Confidence 9964322100 23556666665532 1223333333333333333322222 222334455566 999999999
Q ss_pred cchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC----CCccChHHHHHHHHhccCCC
Q 008789 188 TCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD----RTPYSPAQLLYSWWQHSANL 263 (553)
Q Consensus 188 tCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~----~~~i~p~~~l~~l~~~~~~f 263 (553)
+||+|||+|.|+....+..-+....+.. .+. ...|..+|.|++.+|+..|.... ...++|..|...+|+.+++|
T Consensus 312 sCYl~SviqSlv~~~v~~~~~d~l~~~~-~~~-~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eF 389 (749)
T COG5207 312 SCYLSSVIQSLVGYAVSKEEFDLLQHFE-ICY-MKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEF 389 (749)
T ss_pred eeeHHHHHHHHhccccchhhhhhhccce-eee-ecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhh
Confidence 9999999999999987776554333222 111 13467899999999999998765 45789999999999999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCCCCC
Q 008789 264 ASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCP 343 (553)
Q Consensus 264 ~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~ 343 (553)
...+||||+|||.+||+.|......... +.|.++|++.++.++.|..|+.+++.+++...+.+++....
T Consensus 390 g~~~QQDA~EFLlfLL~kirk~~~S~~~---------~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~-- 458 (749)
T COG5207 390 GKFAQQDAHEFLLFLLEKIRKGERSYLI---------PPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGND-- 458 (749)
T ss_pred hhhhhhhHHHHHHHHHHHHhhccchhcC---------CCcchhhhhhhcceecccccccccccccceEEEEeecccCc--
Confidence 9999999999999999999875433222 47789999999999999999999999999999988876543
Q ss_pred CcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCccccc
Q 008789 344 STDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSR 423 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~ 423 (553)
.+.++.+++++|+.+..++ |.|++|+.+..|+++..|++||++||+|..||... ++...
T Consensus 459 ---------------E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lq--ny~v~ 517 (749)
T COG5207 459 ---------------EPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ--NYKVE 517 (749)
T ss_pred ---------------chhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeecc--ceeeh
Confidence 4669999999999999997 99999999999999999999999999999999987 67788
Q ss_pred ccccccccCc--ccCCCccccccccccc------------------------------------cCCcc-----------
Q 008789 424 KIDRYMQFPF--CLDMNPYLSSSVVRNR------------------------------------FGNRM----------- 454 (553)
Q Consensus 424 Ki~~~V~fP~--~Ldl~~~~~~~~~~~~------------------------------------~~~~~----------- 454 (553)
|+..++.+.. .++++.|++....... .++.-
T Consensus 518 kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqH 597 (749)
T COG5207 518 KLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQH 597 (749)
T ss_pred hccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhh
Confidence 8887777665 5888888775210000 00000
Q ss_pred -----------------------c------------------------------------c------cCCC---------
Q 008789 455 -----------------------F------------------------------------A------FEGD--------- 460 (553)
Q Consensus 455 -----------------------~------------------------------------~------~~~~--------- 460 (553)
. . .++.
T Consensus 598 MdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk 677 (749)
T COG5207 598 MDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQK 677 (749)
T ss_pred ccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhc
Confidence 0 0 0000
Q ss_pred ---CCCCCceEEEEEEEEeecc-CCCCCeEEEEecCC----cEEEEcCcceEEeccccccCCCceEEEEEE
Q 008789 461 ---ELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHLKD----QWYKCDDAWITAVEEEVVRASQCYMLFYAQ 523 (553)
Q Consensus 461 ---~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~~~----~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r 523 (553)
......-|.|.|||+|.|+ +.+|||++|+|..+ +|+.+||+++-.++.-++...++||+||+|
T Consensus 678 ~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 678 KDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred ccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 0112234999999999999 99999999999743 799999999999988889999999999998
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-62 Score=497.02 Aligned_cols=326 Identities=50% Similarity=0.880 Sum_probs=272.2
Q ss_pred cccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHH-hcCCCCccChHHHHHHHHh
Q 008789 180 RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAV-FSGDRTPYSPAQLLYSWWQ 258 (553)
Q Consensus 180 ~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~~~~~~i~p~~~l~~l~~ 258 (553)
|||.|+|||||||||||+|+++|+|+++++...+... +. ...+..|+.++|.++|..+ .++...++.|..|+.++|.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~-~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCT-CL-SCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccc-cc-cCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 6999999999999999999999999999998654321 11 1234668999999999999 4555678999999999999
Q ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCC
Q 008789 259 HSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLD 338 (553)
Q Consensus 259 ~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~ 338 (553)
..+.|.++.||||+|||.+||+.|+++.............+.++|.++|+|.+.++++|..|++.+.+.++|+.|+|++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~ 158 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIP 158 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeecc
Confidence 99999999999999999999999998865543322223344578999999999999999999999999999999999998
Q ss_pred CCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCC
Q 008789 339 TGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPV 418 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~ 418 (553)
........ ..........+|++||+.|+.+|.+++.+ |.|++|++++.+.++..|.++|++|+|||+||.++..
T Consensus 159 ~~~~~~~~-----~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~ 232 (328)
T cd02660 159 NKSTPSWA-----LGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN 232 (328)
T ss_pred cccccccc-----ccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCC
Confidence 75411000 01112234569999999999999998776 9999999999999999999999999999999999843
Q ss_pred cccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEecC-CcEEE
Q 008789 419 RRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHLK-DQWYK 497 (553)
Q Consensus 419 ~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~~-~~W~~ 497 (553)
+...|+++.|.||.+|||.+|+..+... ............|+|+|||+|.|+.++|||++|+|.. ++||+
T Consensus 233 -~~~~K~~~~v~fp~~Ldl~~~~~~~~~~--------~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~~~~W~~ 303 (328)
T cd02660 233 -KTSRKIDTYVQFPLELNMTPYTSSSIGD--------TQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQGDGQWFK 303 (328)
T ss_pred -CCCcCCCcEEeCCCEechhhhccccccc--------ccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECCCCcEEE
Confidence 6678999999999999999998854210 0011234567899999999999998899999999987 99999
Q ss_pred EcCcceEEeccccccCCCceEEEEE
Q 008789 498 CDDAWITAVEEEVVRASQCYMLFYA 522 (553)
Q Consensus 498 ~nD~~V~~v~~~~v~~~~aYlLfY~ 522 (553)
|||+.|+++++++|+..+||||||.
T Consensus 304 ~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 304 FDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred EECCeeEECCHHHhcCCCcEEEEeC
Confidence 9999999999999999999999994
No 6
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-62 Score=490.40 Aligned_cols=280 Identities=30% Similarity=0.536 Sum_probs=246.6
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC--CCccChHHHHHHHHh
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD--RTPYSPAQLLYSWWQ 258 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~i~p~~~l~~l~~ 258 (553)
||.|+|||||||||||+|++ .+++++|+.+|..|+... ...++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 89999999999999999988 247888999999999764 346899999999999
Q ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCC---------CCCCCccccceeeeeEEEeeEEEeCCCCCccccccC
Q 008789 259 HSANLASYEQQDAHEFFISMLDGIHENGVKARSPI---------KDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDP 329 (553)
Q Consensus 259 ~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~---------~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~ 329 (553)
..+.|.+++||||||||.+|||.|+++........ .......+++.++|+|++.++++|..|++++.+.|+
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~ 135 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDET 135 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccce
Confidence 99999999999999999999999998754321110 011223468899999999999999999999999999
Q ss_pred ceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEE
Q 008789 330 FMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLH 409 (553)
Q Consensus 330 f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~ 409 (553)
|++|+|+||... +|++||+.|+.+|.++++++|.|++|++++.++|+..|.++|+||+||
T Consensus 136 f~~Lsl~i~~~~--------------------sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~ 195 (300)
T cd02663 136 FLDLSIDVEQNT--------------------SITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALH 195 (300)
T ss_pred eEEeccCCCCcC--------------------CHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEE
Confidence 999999999744 999999999999999999999999999999999999999999999999
Q ss_pred EeeeeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEE
Q 008789 410 IKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTY 488 (553)
Q Consensus 410 LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~ 488 (553)
|+||.++...+...|+++.|.||..|+|.++... .......|+|+|||+|.|+ +++|||+||
T Consensus 196 LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~-----------------~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~ 258 (300)
T cd02663 196 LKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDD-----------------AENPDRLYELVAVVVHIGGGPNHGHYVSI 258 (300)
T ss_pred EEeEEeecccCCceecCceEecCcEEeccccccc-----------------cCCCCeEEEEEEEEEEecCCCCCCceEEE
Confidence 9999998544567899999999999999876432 2234578999999999998 899999999
Q ss_pred EecCCcEEEEcCcceEEecccccc--------CCCceEEEEE
Q 008789 489 LHLKDQWYKCDDAWITAVEEEVVR--------ASQCYMLFYA 522 (553)
Q Consensus 489 vr~~~~W~~~nD~~V~~v~~~~v~--------~~~aYlLfY~ 522 (553)
+|.+++||+|||+.|+++++++|. ..+||||||+
T Consensus 259 ~k~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 259 VKSHGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EECCCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 999999999999999999999885 5889999995
No 7
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-61 Score=485.93 Aligned_cols=295 Identities=27% Similarity=0.518 Sum_probs=254.7
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCcccccc-----CCCCccchHHHHHHHHHHHhcCCCCccChHHHHHH
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRK-----RSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYS 255 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~-----~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 255 (553)
||.|+||||||||+||+|+++|+||++++........... ......+++++|+.||..|+.+....++|..|+.+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999875433211000 00123579999999999999998889999999998
Q ss_pred HHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeec
Q 008789 256 WWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISL 335 (553)
Q Consensus 256 l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL 335 (553)
+ .|..++||||+|||.+||+.|+++...... ....+++.++|.|++.++++|..|+..+.+.++|+.|+|
T Consensus 81 l-----~~~~~~QqDa~EFl~~lLd~L~~~l~~~~~-----~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l 150 (324)
T cd02668 81 L-----GLDTGQQQDAQEFSKLFLSLLEAKLSKSKN-----PDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELEL 150 (324)
T ss_pred h-----CCCCccccCHHHHHHHHHHHHHHHHhhccC-----CcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEE
Confidence 8 367789999999999999999987653211 112358899999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeee
Q 008789 336 NLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEH 415 (553)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~ 415 (553)
++|... +|+++|+.|+.+|.++|++.|.|++|++++.+.|+..|.++|+||+|||+||.+
T Consensus 151 ~i~~~~--------------------sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~ 210 (324)
T cd02668 151 QLKGHK--------------------TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVF 210 (324)
T ss_pred EecccC--------------------CHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEccee
Confidence 998643 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEec--C
Q 008789 416 FPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHL--K 492 (553)
Q Consensus 416 ~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~--~ 492 (553)
+...+...|+++.|.||..|||++|+... ......|+|+|||+|.|. +++|||++|+|. +
T Consensus 211 d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~-----------------~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~ 273 (324)
T cd02668 211 DRKTGAKKKLNASISFPEILDMGEYLAES-----------------DEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQT 273 (324)
T ss_pred ecccCcceeCCcEEECCCeEechhhcccc-----------------cCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCC
Confidence 86666789999999999999999998542 234678999999999998 899999999996 4
Q ss_pred CcEEEEcCcceEEeccccc---------------------cCCCceEEEEE
Q 008789 493 DQWYKCDDAWITAVEEEVV---------------------RASQCYMLFYA 522 (553)
Q Consensus 493 ~~W~~~nD~~V~~v~~~~v---------------------~~~~aYlLfY~ 522 (553)
++||+|||+.|++++.+.| ....||||||+
T Consensus 274 ~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 274 GEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 7999999999999977655 24689999995
No 8
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-63 Score=504.94 Aligned_cols=432 Identities=24% Similarity=0.424 Sum_probs=302.4
Q ss_pred CCCeEEecccCCcccc-----hhHHhhhcCC--CCCeEEEECCCCcEEEcCCCCEEeCCChh-hH---H-HHhhhhccCC
Q 008789 63 QKRLYLCLICSSISCS-----SHTLLHSQCE--NGHDIAVDIERSELYCVLCCDQVYDPDFD-KI---V-MLKHLMDLPR 130 (553)
Q Consensus 63 ~~~~~~Cl~Cg~~~c~-----~h~~~H~~~~--~~H~~~~~~~~~~~~c~~c~~~v~d~~~~-~~---~-~~~~~~~~~~ 130 (553)
...+|+||.||+.+|| .||+.|++.. +.|+|+|++.++.+|||.||..+....-. .+ + ++........
T Consensus 90 ~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~Hclvin~~n~~~WCy~Cd~kl~~~~~kn~l~e~vd~l~k~a~~~~ 169 (877)
T KOG1873|consen 90 DNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEPHCLVINLINWLIWCYSCDAKLVPFDKKNLLGEKVDLLIKVASKTS 169 (877)
T ss_pred ccceeeecccCCeeeCCCcccchhhhhhcccCCCCeeEEEEeeeeeeEEEeccchhccccchhHHHHHHHHHHHHHhccc
Confidence 4579999999999998 7999999864 78999999999999999999844321111 11 1 1111110000
Q ss_pred CCCCCCCccccccccccccchhhhhhhhhhhhhh-h-ccccccccCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHH
Q 008789 131 SGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLV-S-MRDLRAKSCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYF 208 (553)
Q Consensus 131 ~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~~~-~-~~~~~~~~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~l 208 (553)
.+.. .....+....++.-. + .........+.+-++||.|||||||+|||+|.|..+|.||+.|
T Consensus 170 --~~~s-------------pn~~~~s~~~ek~e~~ski~~ggie~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l 234 (877)
T KOG1873|consen 170 --LTRS-------------PNTLKISSEEEKLEKGSKIKKGGIEKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVL 234 (877)
T ss_pred --cccC-------------CCcccchhhHHhhhhcccccccCccccccccccccccccchhhHHHHHHHHhhcHHHHHHH
Confidence 0000 000000010010000 0 0000023456677999999999999999999999999999999
Q ss_pred HcCCCCccccccC-------------CCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhccCCCCCCCcCCHHHHH
Q 008789 209 LTGQRNHEVCRKR-------------SSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQHSANLASYEQQDAHEFF 275 (553)
Q Consensus 209 l~~~~~~~~~~~~-------------~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~~~f~~~~QqDA~Efl 275 (553)
............. ..+...+..+|.. +..|..+.+.+++|..|+..+....|+|.++.||||||+|
T Consensus 235 ~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELL 313 (877)
T KOG1873|consen 235 KEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELL 313 (877)
T ss_pred HhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhccCCccCHHHHHHHHHHhCCcccccccccHHHHH
Confidence 8765443211110 1123345566666 5566677788999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCC-------------------------CCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCc
Q 008789 276 ISMLDGIHENGVKARSP-------------------------IKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPF 330 (553)
Q Consensus 276 ~~lL~~L~~~~~~~~~~-------------------------~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f 330 (553)
+.|||.|..|....... ...-......+..+|.|.+.+.+.|..|. ++...+.|
T Consensus 314 R~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~ 392 (877)
T KOG1873|consen 314 RCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPLSFNGPLTSQIECQACD-VSSVHESF 392 (877)
T ss_pred HHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccCCcccccccCCCcccchhhhccc-eeccchhh
Confidence 99999998653211000 00011112344477888888888888887 66666777
Q ss_pred eeeeccCCCCCCC-------------------------------------------------------------------
Q 008789 331 MDISLNLDTGNCP------------------------------------------------------------------- 343 (553)
Q Consensus 331 ~~LsL~i~~~~~~------------------------------------------------------------------- 343 (553)
.+.++||-.....
T Consensus 393 ~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~ 472 (877)
T KOG1873|consen 393 LSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELLDSLTDDNDQVFKGQSDVAGTNSKEDQNKAKN 472 (877)
T ss_pred cccccccccCccccccCCCcccceeccccccCCccccCcccCcccccccccccccCchhhccccccccCccccccchhhh
Confidence 7777776442210
Q ss_pred --------------------------------------------------------------------------------
Q 008789 344 -------------------------------------------------------------------------------- 343 (553)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (553)
T Consensus 473 ~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~ 552 (877)
T KOG1873|consen 473 QAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCND 552 (877)
T ss_pred hhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccccccccccCCcccCCccHHHhhhhhhhcccCC
Confidence
Q ss_pred -----------------------------------C------------cc---ccc-----------CC---------C-
Q 008789 344 -----------------------------------S------------TD---LAN-----------KS---------L- 352 (553)
Q Consensus 344 -----------------------------------~------------~~---~~~-----------~~---------~- 352 (553)
. .. .+. -. .
T Consensus 553 ~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~ 632 (877)
T KOG1873|consen 553 PEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLI 632 (877)
T ss_pred cccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccccccccceeeechhhhccCccccccchHHhhh
Confidence 0 00 000 00 0
Q ss_pred -CC------------------------------------CCCCCccCHHHHHHhccCCcccCCCCcccccccccc-----
Q 008789 353 -KP------------------------------------SDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQER----- 390 (553)
Q Consensus 353 -~~------------------------------------~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~----- 390 (553)
.+ .....+++++.||..|++.|.+.|+|+|.|++|.+.
T Consensus 633 e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~ 712 (877)
T KOG1873|consen 633 EIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQR 712 (877)
T ss_pred cCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHHHHHHhhhhhhhcccccchhhhhhhccccccc
Confidence 00 001246799999999999999999999999999651
Q ss_pred ----------------------cceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCcccCCCcccccccccc
Q 008789 391 ----------------------QDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRN 448 (553)
Q Consensus 391 ----------------------~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~ 448 (553)
..|.|+..|..+|+||+||||||.++. .++..|.+.+|.|++.+|+.+|+..-...-
T Consensus 713 r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~-~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l 791 (877)
T KOG1873|consen 713 REKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDI-RGRLSKLNKHVDFKEFEDLLDYMDFRCSHL 791 (877)
T ss_pred hhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhh-hchhhcccccchHHHHHHHHHHhhhhcccc
Confidence 135678889999999999999999874 455899999999999999999886532110
Q ss_pred ccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec----------------------CCcEEEEcCcceEEe
Q 008789 449 RFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL----------------------KDQWYKCDDAWITAV 506 (553)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~----------------------~~~W~~~nD~~V~~v 506 (553)
.......|+|+|||.|.|++..|||++|+|. .++||.+.|+.|+++
T Consensus 792 ------------~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~Vrev 859 (877)
T KOG1873|consen 792 ------------DEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIPSGRWYYISDSIVREV 859 (877)
T ss_pred ------------CCcchhhhhhccceeccccccCCcchhhhhccchhhccCccccccchhccCCCCcceEEecchheecc
Confidence 1125678999999999999999999999974 268999999999999
Q ss_pred ccccccCCCceEEEEEEe
Q 008789 507 EEEVVRASQCYMLFYAQK 524 (553)
Q Consensus 507 ~~~~v~~~~aYlLfY~r~ 524 (553)
++++|+.++||||||+|.
T Consensus 860 S~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 860 SLDEVLKSEAYLLFYERI 877 (877)
T ss_pred cHHHHhhhhhhhhheecC
Confidence 999999999999999983
No 9
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.1e-61 Score=480.11 Aligned_cols=302 Identities=27% Similarity=0.496 Sum_probs=245.2
Q ss_pred ccCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHH
Q 008789 172 KSCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQ 251 (553)
Q Consensus 172 ~~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~ 251 (553)
+....+|++||.|+|||||||||||+|+++|+||+.+....... ........+..++..++......+.|..
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~--------~~~~~~q~~~~~l~~~~~~~~~~~~P~~ 88 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI--------SSVEQLQSSFLLNPEKYNDELANQAPRR 88 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc--------CcHHHHHHHHHHHHHHHhhcccccCHHH
Confidence 46677899999999999999999999999999999986542100 0111111222333455555445567999
Q ss_pred HHHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCce
Q 008789 252 LLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFM 331 (553)
Q Consensus 252 ~l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~ 331 (553)
|+.+++..++.|.++.||||+|||.+||+.|+. .+.++|+|.+.++++|.+|++.+.+.|+|+
T Consensus 89 ~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~-----------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~ 151 (332)
T cd02671 89 LLNALREVNPMYEGYLQHDAQEVLQCILGNIQE-----------------LVEKDFQGQLVLRTRCLECETFTERREDFQ 151 (332)
T ss_pred HHHHHHHhccccCCccccCHHHHHHHHHHHHHH-----------------HHHhhhceEEEEEEEeCCCCCeeceecccE
Confidence 999999999999999999999999999999983 677899999999999999999999999999
Q ss_pred eeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEe
Q 008789 332 DISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIK 411 (553)
Q Consensus 332 ~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~Lk 411 (553)
+|+|+|+.......... ....+.......+|++||+.|+++|.++|+++|.|++|++++.++|+..|.++|+||+|||+
T Consensus 152 ~lsL~i~~~~~~~~~~~-~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~Lk 230 (332)
T cd02671 152 DISVPVQESELSKSEES-SEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLK 230 (332)
T ss_pred EEEEEeCCCcccccccc-cccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEee
Confidence 99999997531111100 00011111234699999999999999999999999999999999999999999999999999
Q ss_pred eeeecCC----cccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeE
Q 008789 412 RFEHFPV----RRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYV 486 (553)
Q Consensus 412 Rf~~~~~----~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~ 486 (553)
||.++.. .+...|+++.|.||..|||.++... .....|+|+|||+|.|. +++|||+
T Consensus 231 RF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~-------------------~~~~~Y~L~~VI~H~G~~~~~GHY~ 291 (332)
T cd02671 231 CFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK-------------------PKNDVYRLFAVVMHSGATISSGHYT 291 (332)
T ss_pred eeccccccccccCCceecCccccCccccccccccCC-------------------CCCCeEEEEEEEEEcCCCCCCCeEE
Confidence 9997632 1346899999999999999876532 23578999999999997 8999999
Q ss_pred EEEecCCcEEEEcCcceEEecccccc---------CCCceEEEEE
Q 008789 487 TYLHLKDQWYKCDDAWITAVEEEVVR---------ASQCYMLFYA 522 (553)
Q Consensus 487 a~vr~~~~W~~~nD~~V~~v~~~~v~---------~~~aYlLfY~ 522 (553)
||+| ||+|||+.|++++++++. ..+||||||+
T Consensus 292 a~vr----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 292 AYVR----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EEEE----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999 999999999999987764 3689999995
No 10
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-60 Score=478.64 Aligned_cols=294 Identities=29% Similarity=0.517 Sum_probs=248.0
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHH-HHHHHHhc
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQ-LLYSWWQH 259 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~-~l~~l~~~ 259 (553)
||.|+||||||||+||+|+++|+||++++....+.. ....++..+|..+|..+......++.|.. |+..++
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999998654321 12345788999999888776666777776 777654
Q ss_pred cCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCC
Q 008789 260 SANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDT 339 (553)
Q Consensus 260 ~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~ 339 (553)
.+.|..+.||||||||.+||+.|+ ++|.++|+|++.++++|..|+.++.+.++|..|+|++|
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~-----------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~- 134 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLH-----------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP- 134 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHH-----------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC-
Confidence 467999999999999999999998 26788999999999999999999999999999999987
Q ss_pred CCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCc
Q 008789 340 GNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVR 419 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~ 419 (553)
+|+++|+.|+.+|.++|++.|+|++|++++.++|+..|.++|+||+|||+||.++...
T Consensus 135 ----------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~ 192 (327)
T cd02664 135 ----------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKT 192 (327)
T ss_pred ----------------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEcccc
Confidence 6899999999999999999999999999999999999999999999999999998766
Q ss_pred ccccccccccccCcccCCCccccccccccccCCc--ccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEecC----
Q 008789 420 RMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNR--MFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHLK---- 492 (553)
Q Consensus 420 ~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~~---- 492 (553)
+...|+++.|.||+.|||.++............. .....+........|+|+|||+|.|. +++|||+||+|..
T Consensus 193 ~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~ 272 (327)
T cd02664 193 HVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDAD 272 (327)
T ss_pred CcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccc
Confidence 6778999999999999999887532111000000 00001112235679999999999997 8999999999963
Q ss_pred ------------------CcEEEEcCcceEEeccccccC-------CCceEEEEE
Q 008789 493 ------------------DQWYKCDDAWITAVEEEVVRA-------SQCYMLFYA 522 (553)
Q Consensus 493 ------------------~~W~~~nD~~V~~v~~~~v~~-------~~aYlLfY~ 522 (553)
++||+|||+.|++++.++|.+ .+||||||+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 273 STGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred cccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 689999999999999999976 899999995
No 11
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-60 Score=469.10 Aligned_cols=256 Identities=38% Similarity=0.712 Sum_probs=230.5
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhcc
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQHS 260 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 260 (553)
||.|+|||||||||||+|+++|+||++++. +|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 899999999999999999999999999864 6788888888888
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCC
Q 008789 261 ANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTG 340 (553)
Q Consensus 261 ~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~ 340 (553)
+.|.+++||||+|||.+||+.|+ +++.++|+|++.++++|.+|+..+.+.|+|++|+|+++..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~-----------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~ 106 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR-----------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH-----------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcc
Confidence 99999999999999999999998 2678899999999999999999999999999999987643
Q ss_pred CCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCcc
Q 008789 341 NCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRR 420 (553)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~ 420 (553)
. ....+|++||+.|+.+|.++++++|.|++|++ ++|+..|.++|++|+|||+||.++. .+
T Consensus 107 ~----------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~-~~ 166 (279)
T cd02667 107 I----------------KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPR-SA 166 (279)
T ss_pred c----------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCc-cc
Confidence 2 13459999999999999999999999999988 8899999999999999999999885 33
Q ss_pred cccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec---------
Q 008789 421 MSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL--------- 491 (553)
Q Consensus 421 ~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~--------- 491 (553)
...|+++.|.||..|||++|+..... .........|+|+|||+|.|+.++|||+||+|.
T Consensus 167 ~~~Ki~~~v~fP~~Ldl~~~~~~~~~------------~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~ 234 (279)
T cd02667 167 NLRKVSRHVSFPEILDLAPFCDPKCN------------SSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSD 234 (279)
T ss_pred CceecCceEeCCCccchhhccCcccc------------ccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCcccccccc
Confidence 67899999999999999999875310 012335679999999999999999999999986
Q ss_pred --------------CCcEEEEcCcceEEeccccccCCCceEEEEE
Q 008789 492 --------------KDQWYKCDDAWITAVEEEVVRASQCYMLFYA 522 (553)
Q Consensus 492 --------------~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~ 522 (553)
+++||+|||+.|++++.++|...+||||||+
T Consensus 235 ~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 235 LTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred ccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 5799999999999999999999999999996
No 12
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.2e-59 Score=467.07 Aligned_cols=292 Identities=24% Similarity=0.441 Sum_probs=247.9
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC--------------CCc
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD--------------RTP 246 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--------------~~~ 246 (553)
||.|+|||||||||||+|+++|+||++++...... .+ ....+..++.++|.+++..++++. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~-~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKF-PS-DVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhcccc-CC-CcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 89999999999999999999999999998732221 11 112356689999999999998753 246
Q ss_pred cChHHHHHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCcccc
Q 008789 247 YSPAQLLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTT 326 (553)
Q Consensus 247 i~p~~~l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~ 326 (553)
++|..|+.+++...+.|..++||||+|||++||+.|+++...... ..+.++|+|.+.++++|..|+.++.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~---------~~~~~~f~~~~~~~i~C~~C~~~s~~ 149 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNLG---------LNPNDLFKFMIEDRLECLSCKKVKYT 149 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccccc---------CCchhheEEEeeEEEEcCCCCCEEEe
Confidence 899999999999999999999999999999999999988653211 35778999999999999999999999
Q ss_pred ccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceE
Q 008789 327 YDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVL 406 (553)
Q Consensus 327 ~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL 406 (553)
.++|.+|+|++|........ .........+|+++|+.|+.+|.++ ++|++|++++.+.|+.+|.++|+||
T Consensus 150 ~e~~~~lsL~l~~~~~~~~~------~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vL 219 (311)
T cd02658 150 SELSEILSLPVPKDEATEKE------EGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYL 219 (311)
T ss_pred ecceeEEeeecccccccccc------cccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceE
Confidence 99999999999975410000 0011123559999999999999996 6899999999999999999999999
Q ss_pred EEEEeeeeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCe
Q 008789 407 CLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHY 485 (553)
Q Consensus 407 ~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY 485 (553)
+|||+||.++. .+...|++..|.||..|. ...|+|+|||+|.|. +++|||
T Consensus 220 ii~LkRF~~~~-~~~~~Ki~~~v~~p~~l~----------------------------~~~Y~L~~vI~H~G~~~~~GHY 270 (311)
T cd02658 220 VINMKRFQLLE-NWVPKKLDVPIDVPEELG----------------------------PGKYELIAFISHKGTSVHSGHY 270 (311)
T ss_pred EEEeEEEEecC-CCceEeeccccccCCcCC----------------------------CCcEEEEEEEEccCCCCCCcce
Confidence 99999999963 566789999999998761 246999999999998 899999
Q ss_pred EEEEecC----CcEEEEcCcceEEeccccccCCCceEEEEE
Q 008789 486 VTYLHLK----DQWYKCDDAWITAVEEEVVRASQCYMLFYA 522 (553)
Q Consensus 486 ~a~vr~~----~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~ 522 (553)
++|+|.. ++||+|||+.|++++..+|...+||||||+
T Consensus 271 ~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 271 VAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 9999987 899999999999999999999999999995
No 13
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9e-59 Score=465.67 Aligned_cols=288 Identities=26% Similarity=0.365 Sum_probs=249.3
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhcc
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQHS 260 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 260 (553)
||.|+|||||||||||+|+++|+|+++++....... .......+++++|++||..|+.+.. +++|.+|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~l~~~~~-~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR---GANQSSDNLTNALRDLFDTMDKKQE-PVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc---ccccchhHHHHHHHHHHHHHHhCCC-cCCcHHHHHHHHHHC
Confidence 899999999999999999999999999987654321 0112345799999999999987654 799999999999988
Q ss_pred CCCC------CCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCC-CccccccCceee
Q 008789 261 ANLA------SYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCG-YTSTTYDPFMDI 333 (553)
Q Consensus 261 ~~f~------~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~-~~s~~~e~f~~L 333 (553)
+.|. +++||||+|||..||+.|+++..... ...+.+.++|+|++.+.++|..|+ .++.+.++|.+|
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~-------~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~L 149 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAG-------SKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKL 149 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhcccC-------CCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEE
Confidence 8884 55999999999999999999865311 112588999999999999999999 799999999999
Q ss_pred eccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeee
Q 008789 334 SLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRF 413 (553)
Q Consensus 334 sL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf 413 (553)
+|+||... ...+|+++|+.++.++.. ..|+.|+....++|+.+|.++|++|+|||+||
T Consensus 150 sl~i~~~~-----------------~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF 207 (305)
T cd02657 150 QCHISITT-----------------EVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRF 207 (305)
T ss_pred EeecCCCc-----------------ccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECC
Confidence 99998742 234899999999976654 46899999999999999999999999999999
Q ss_pred eecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEecC
Q 008789 414 EHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHLK 492 (553)
Q Consensus 414 ~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~~ 492 (553)
.++.......|+++.|.||.+|||.+|+.. +..|+|+|||+|.|+ +++|||+||+|..
T Consensus 208 ~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~---------------------~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~ 266 (305)
T cd02657 208 FWKRDIQKKAKILRKVKFPFELDLYELCTP---------------------SGYYELVAVITHQGRSADSGHYVAWVRRK 266 (305)
T ss_pred ccccccCceeecCcEEECCceEecccccCC---------------------CCcEEEEEEEEecCCCCCCcEEEEEEEcC
Confidence 988655667899999999999999998752 358999999999997 8999999999987
Q ss_pred --CcEEEEcCcceEEeccccccC-------CCceEEEEE
Q 008789 493 --DQWYKCDDAWITAVEEEVVRA-------SQCYMLFYA 522 (553)
Q Consensus 493 --~~W~~~nD~~V~~v~~~~v~~-------~~aYlLfY~ 522 (553)
++||+|||+.|+++++++|.. ..||||||+
T Consensus 267 ~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 267 NDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred CCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 899999999999999999974 699999996
No 14
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-58 Score=465.05 Aligned_cols=298 Identities=35% Similarity=0.714 Sum_probs=261.4
Q ss_pred cccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhc
Q 008789 180 RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQH 259 (553)
Q Consensus 180 ~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~ 259 (553)
+||.|+|||||||||||+|+++|+|++++++..+.... ..+..++.++|..++..++......+.|..|..+++..
T Consensus 2 ~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~ 77 (304)
T cd02661 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC----CNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQI 77 (304)
T ss_pred CCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc----cCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHH
Confidence 69999999999999999999999999999875443321 22356899999999999988777889999999999998
Q ss_pred cCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCC---CCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeecc
Q 008789 260 SANLASYEQQDAHEFFISMLDGIHENGVKARSPI---KDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLN 336 (553)
Q Consensus 260 ~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~---~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~ 336 (553)
.+.|..+.||||+|||.+||+.|+++........ .......+++.++|+|++.++++|..|+..+.+.++|+.|+|+
T Consensus 78 ~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~ 157 (304)
T cd02661 78 SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLD 157 (304)
T ss_pred HHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeee
Confidence 8999999999999999999999997643221111 0112234688999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeec
Q 008789 337 LDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHF 416 (553)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~ 416 (553)
+|... +|+++|+.++.+|.+++++.|.|++|+++..+.++.+|.++|++|+|||+||.++
T Consensus 158 i~~~~--------------------~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~ 217 (304)
T cd02661 158 IKGAD--------------------SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF 217 (304)
T ss_pred cCCCC--------------------cHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC
Confidence 99744 8999999999999999988999999999999999999999999999999999876
Q ss_pred CCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEec-CCc
Q 008789 417 PVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHL-KDQ 494 (553)
Q Consensus 417 ~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~-~~~ 494 (553)
...|+.+.|.||..|||.+|+..+ ......|+|+|||+|.|. +++|||++|+|. +++
T Consensus 218 ----~~~Ki~~~v~f~~~L~l~~~~~~~-----------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~ 276 (304)
T cd02661 218 ----RGGKINKQISFPETLDLSPYMSQP-----------------NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGK 276 (304)
T ss_pred ----CccccCCeEecCCeechhhccccC-----------------CCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCC
Confidence 467999999999999999988642 235678999999999999 699999999996 789
Q ss_pred EEEEcCcceEEeccccccCCCceEEEEE
Q 008789 495 WYKCDDAWITAVEEEVVRASQCYMLFYA 522 (553)
Q Consensus 495 W~~~nD~~V~~v~~~~v~~~~aYlLfY~ 522 (553)
||+|||..|+++++++|++.+||||||.
T Consensus 277 W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 277 WYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred EEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 9999999999999999999999999994
No 15
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-58 Score=469.90 Aligned_cols=309 Identities=29% Similarity=0.513 Sum_probs=257.8
Q ss_pred cccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHH
Q 008789 178 GLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWW 257 (553)
Q Consensus 178 g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~ 257 (553)
|++||.|+||||||||+||+|+++|+|+++++...... ...+..++.++|..+|..+..+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~-----~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE-----DDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc-----cCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 78999999999999999999999999999998752111 1223567999999999999977655555555442222
Q ss_pred hccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccC
Q 008789 258 QHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNL 337 (553)
Q Consensus 258 ~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i 337 (553)
.....|..++||||+|||.+||+.|+++...... .+.+.++|+|.+...++|..|+..+...++|+.|+|++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~--------~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 147 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQ--------EGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV 147 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccCcc--------cchhhhhCceEEEeEEEecCCCceecccccceEEEEEc
Confidence 2335678899999999999999999987654221 24788999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecC
Q 008789 338 DTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFP 417 (553)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~ 417 (553)
+... +|+++|+.|+.+|.+++.+.|.|++|++++.+.++..|.++|++|+|||+||.++.
T Consensus 148 ~~~~--------------------~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~ 207 (334)
T cd02659 148 KGKK--------------------NLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDF 207 (334)
T ss_pred CCCC--------------------CHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEcc
Confidence 8644 89999999999999999999999999999999999999999999999999999986
Q ss_pred CcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEecC--CcE
Q 008789 418 VRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHLK--DQW 495 (553)
Q Consensus 418 ~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~~--~~W 495 (553)
..+...|+++.|.||..|||.+|+........ ............|+|+|||+|.|+.++|||++|+|.. ++|
T Consensus 208 ~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~------~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W 281 (334)
T cd02659 208 ETMMRIKINDRFEFPLELDMEPYTEKGLAKKE------GDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKW 281 (334)
T ss_pred ccCcceeCCceEeCCceecCcccccccccccc------ccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCce
Confidence 56677899999999999999999875421100 0011133456789999999999999999999999975 899
Q ss_pred EEEcCcceEEecccccc----------------------CCCceEEEEEEec
Q 008789 496 YKCDDAWITAVEEEVVR----------------------ASQCYMLFYAQKM 525 (553)
Q Consensus 496 ~~~nD~~V~~v~~~~v~----------------------~~~aYlLfY~r~~ 525 (553)
|.|||+.|+++++++|+ ...||||||+|++
T Consensus 282 ~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 282 YKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred EEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 99999999999999884 2469999999975
No 16
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-58 Score=475.92 Aligned_cols=445 Identities=44% Similarity=0.789 Sum_probs=349.8
Q ss_pred cccCCCCCCCCccCCCCCCeEE-ecccCCcccc--hhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeCCChhhHHHHh
Q 008789 47 KNHQTEIPRCCFCNGYQKRLYL-CLICSSISCS--SHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFDKIVMLK 123 (553)
Q Consensus 47 ~~~~~~~~~c~~C~~~~~~~~~-Cl~Cg~~~c~--~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~~~~~~~~~~ 123 (553)
+........|-.|........+ |+.|+.++|. .|-..|.. ..+|-+.+++.++..||++|+++|++.+..++....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~ 115 (492)
T KOG1867|consen 37 RILPLKTINCGTCGVLQIRLAVPCLICDSLGCLSNSHKLEHSG-NKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIK 115 (492)
T ss_pred hhcccccceeEEechhhhhhcccceechhcccccccccccccc-cccccccceeehhhheeccCCcEeeccchhhHHHHH
Confidence 3334444567788555566777 8999999997 56778887 689999999999999999999999988866554332
Q ss_pred hhhccCCCCCCCCCccccccccccccchhhhhhhhhhhhhhhc--cccccccCCCCcccccccCCCcchhHHHHHHHhcC
Q 008789 124 HLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSM--RDLRAKSCYPLGLRGLNNLGSTCFMNSVLQALLHA 201 (553)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~ 201 (553)
+.. ..+..+......... ....+. +..+... .+.........|++||.|+|+||+||++||+|.+.
T Consensus 116 ~~~--~~~~~~~~~~~~~~~-~~~~~~---------~~t~~~~~~~~~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl~~~ 183 (492)
T KOG1867|consen 116 KYK--EQPFHQLDSTLLTHL-AEATVC---------QQTLLKENPKDRLVLSTTALGLRGLRNLGSTCFMNVILQSLLHD 183 (492)
T ss_pred hhh--ccchhhccchhhhhh-hhhhcc---------chhcccCCcccccccceeeecccccccccHHHHHHHHHHHhhcc
Confidence 222 111111111100000 000000 0000000 01122355677899999999999999999999999
Q ss_pred HhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC-CCccChHHHHHHHHhccCCCCCCCcCCHHHHHHHHHH
Q 008789 202 PPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD-RTPYSPAQLLYSWWQHSANLASYEQQDAHEFFISMLD 280 (553)
Q Consensus 202 p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~i~p~~~l~~l~~~~~~f~~~~QqDA~Efl~~lL~ 280 (553)
+..++..+...+. +........|+.+++..+|..++++. ..+++|..+++.+|+..+.+.+++|||||||+..+++
T Consensus 184 ~~~~~~~l~~~h~---~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~ 260 (492)
T KOG1867|consen 184 PLSRSSFLSGIHS---KEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWKHSPNLAGYEQQDAHEFLIALLD 260 (492)
T ss_pred chhhccchhhhcc---cCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHHhCcccccccccchHHHHHHhcc
Confidence 9999998887766 22223336789999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhcC---CCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCCCCC
Q 008789 281 GIHENG---VKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDN 357 (553)
Q Consensus 281 ~L~~~~---~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~ 357 (553)
.++.+. .+.......+..+.++++.+|.|.+.+.++|..|+..+.+.++|++|+|+||........ .
T Consensus 261 ~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~----------~ 330 (492)
T KOG1867|consen 261 RLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSSSV----------R 330 (492)
T ss_pred cccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccceeeecchhccCccc----------c
Confidence 999887 111112223446688999999999999999999999999999999999999964311000 0
Q ss_pred CCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCcccCC
Q 008789 358 TYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDM 437 (553)
Q Consensus 358 ~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl 437 (553)
....++.+|++.|...|......++.|..|+.++.++|+..|.++|.+|.+|++||++....... |+++.|.||..|+|
T Consensus 331 ~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~-ki~~~v~fp~~l~m 409 (492)
T KOG1867|consen 331 SPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGARE-KIDSYVSFPVLLNM 409 (492)
T ss_pred cchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccccccccc-ccCcccccchhhcC
Confidence 01347999999999999988888999999999999999999999999999999999998643333 99999999999999
Q ss_pred CccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEecCCcEEEEcCcceEEeccccccCCCce
Q 008789 438 NPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCY 517 (553)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~aY 517 (553)
.+|+..+..+ ..+..+..|+|.|||+|+|+.++|||+||.|..+.||+|||+.|+.++.++|+..+||
T Consensus 410 ~p~~~~~~~~------------~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~~~~~~~~dDs~v~~~s~~eVl~~~ay 477 (492)
T KOG1867|consen 410 KPYCSSEKLK------------SQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQSGGWFKCDDSTVTKVSEEEVLSSQAY 477 (492)
T ss_pred Cccccccccc------------cCCCCCceEEEEEEEEeccCCCCCceEEEEEeCCCcEEEcCeEEEEeeHHHhhhchhh
Confidence 9999863221 1224678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecccccc
Q 008789 518 MLFYAQKMLYYKA 530 (553)
Q Consensus 518 lLfY~r~~~~~~~ 530 (553)
+|||.+..+.+.+
T Consensus 478 lLFY~~~~~~~~~ 490 (492)
T KOG1867|consen 478 LLFYTQEQVEYEA 490 (492)
T ss_pred heehhHHhhhhhh
Confidence 9999998876643
No 17
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-58 Score=457.11 Aligned_cols=330 Identities=32% Similarity=0.599 Sum_probs=276.5
Q ss_pred CcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCC-CCccchHHHHHHHHHHHhcCCCCccChHHHHHH
Q 008789 177 LGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRS-SDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYS 255 (553)
Q Consensus 177 ~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 255 (553)
.|..||+|+||||||||.||||.|++.+|+||+...+....+.... .-...+...++.|++.++.++-..++|..|...
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 4889999999999999999999999999999998776655444221 123457788889999999999999999999999
Q ss_pred HHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCC--CCCCC----------------------CCCCccccceeeeeEEE
Q 008789 256 WWQHSANLASYEQQDAHEFFISMLDGIHENGVKA--RSPIK----------------------DTGECHCVAHRVFSGQL 311 (553)
Q Consensus 256 l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~--~~~~~----------------------~~~~~~~~i~~~F~g~l 311 (553)
++..+..|.|+.|||.+||+.++||.||++.... +.... ....+.++|.++|.|..
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 9999999999999999999999999999985421 11100 11234689999999999
Q ss_pred eeEEEeCCCCCccccccCceeeeccCCCCCCC------------------------------------------------
Q 008789 312 RSDVTCMSCGYTSTTYDPFMDISLNLDTGNCP------------------------------------------------ 343 (553)
Q Consensus 312 ~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~------------------------------------------------ 343 (553)
.+++.|..|+.++.+++||.+|+||+|....-
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~ 502 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVM 502 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEE
Confidence 99999999999999999999999999975310
Q ss_pred --------------------------------------------------------------------------------
Q 008789 344 -------------------------------------------------------------------------------- 343 (553)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (553)
T Consensus 503 ~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~ 582 (823)
T COG5560 503 CIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEF 582 (823)
T ss_pred EEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHH
Confidence
Q ss_pred --------------------------C----------cccccC--------CCCC-------------------------
Q 008789 344 --------------------------S----------TDLANK--------SLKP------------------------- 354 (553)
Q Consensus 344 --------------------------~----------~~~~~~--------~~~~------------------------- 354 (553)
+ +....+ ...+
T Consensus 583 ~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~l 662 (823)
T COG5560 583 EELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPL 662 (823)
T ss_pred HHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCcc
Confidence 0 000000 0000
Q ss_pred ------CCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCcccccccccc
Q 008789 355 ------SDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRY 428 (553)
Q Consensus 355 ------~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~ 428 (553)
......+||++||..|.++|.+.-.+.|+|+.|+..+.|+|++.|.++|.+|+||||||+.. .....|+++-
T Consensus 663 w~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~--rsfrdKiddl 740 (823)
T COG5560 663 WTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSV--RSFRDKIDDL 740 (823)
T ss_pred chhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhc--ccchhhhhhh
Confidence 00124679999999999999999999999999999999999999999999999999999965 6778999999
Q ss_pred cccCc-ccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEE
Q 008789 429 MQFPF-CLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITA 505 (553)
Q Consensus 429 V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~ 505 (553)
|+||. .|||+.+...- .+....|+|+||=.|+|.+.+|||+||+|+ +++||+|||++|++
T Consensus 741 VeyPiddldLs~~~~~~-----------------~~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsrite 803 (823)
T COG5560 741 VEYPIDDLDLSGVEYMV-----------------DDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITE 803 (823)
T ss_pred hccccccccccceEEee-----------------cCcceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccc
Confidence 99997 79999877642 223478999999999999999999999998 88999999999999
Q ss_pred eccccccCCCceEEEEEEec
Q 008789 506 VEEEVVRASQCYMLFYAQKM 525 (553)
Q Consensus 506 v~~~~v~~~~aYlLfY~r~~ 525 (553)
+.+++...+.||+|||+|+.
T Consensus 804 vdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 804 VDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred cCccccccceeEEEEEEecC
Confidence 99999999999999999973
No 18
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-54 Score=399.15 Aligned_cols=314 Identities=25% Similarity=0.370 Sum_probs=239.8
Q ss_pred ccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCcccccc--CCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHH
Q 008789 179 LRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRK--RSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSW 256 (553)
Q Consensus 179 ~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l 256 (553)
..||.|+|||||||++||||+.+..+...++...+....+.. ...+..-...++..+...+.......|+|.+|+..+
T Consensus 71 p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~i~ 150 (415)
T COG5533 71 PNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFIDIL 150 (415)
T ss_pred CccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHHHH
Confidence 469999999999999999999999999866544332221111 111222344455555555555555679999999999
Q ss_pred HhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCC--C---C----------------------CCCccccceeeeeE
Q 008789 257 WQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPI--K---D----------------------TGECHCVAHRVFSG 309 (553)
Q Consensus 257 ~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~--~---~----------------------~~~~~~~i~~~F~g 309 (553)
...++.|++..|||+|||+.++||.||++....+... . + --...+.+.+.|.|
T Consensus 151 ~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~g 230 (415)
T COG5533 151 SGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFG 230 (415)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHhh
Confidence 9999999999999999999999999999865443221 1 0 01123678899999
Q ss_pred EEeeEEEeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCccccccccc
Q 008789 310 QLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQE 389 (553)
Q Consensus 310 ~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~ 389 (553)
+..++++|..|++.++++.+|..|.+|++... ...|++|+++|.++|.++|++.|.|++|++
T Consensus 231 q~~srlqC~~C~~TStT~a~fs~l~vp~~~v~------------------~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~ 292 (415)
T COG5533 231 QDKSRLQCEACNYTSTTIAMFSTLLVPPYEVV------------------QLGLQECIDRFYEEEKLEGKDAWRCPKCGR 292 (415)
T ss_pred hhhhhhhhhhcCCceeEEeccceeeeccchhe------------------eecHHHHHHHhhhHHhhcCcccccCchhcc
Confidence 99999999999999999999999999998754 346999999999999999999999999999
Q ss_pred ccceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEE
Q 008789 390 RQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFE 469 (553)
Q Consensus 390 ~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 469 (553)
++.++|++.|.++|++|||||+||.-. -....|+ |+.++.............. ......-.+.+|+
T Consensus 293 k~ss~K~~~I~~lP~~LII~i~RF~i~--V~~~~ki----------D~p~gw~~~~~~e~~v~~~--f~~~~~~~P~~Y~ 358 (415)
T COG5533 293 KESSRKRMEILVLPDVLIIHISRFHIS--VMGRKKI----------DTPQGWKNTASVEVNVTLL--FNNGIGYIPRKYS 358 (415)
T ss_pred cccchheEEEEecCceEEEEeeeeeEE--eeccccc----------CCCcchhccCCceeccccc--ccCCCCCCcccee
Confidence 999999999999999999999999843 2223344 3433332221100000000 0111233467899
Q ss_pred EEEEEEeeccCCCCCeEEEEecCCcEEEEcCcceEEecccc-ccCCCceEEEEEEe
Q 008789 470 IFAVVTHSGTLDSGHYVTYLHLKDQWYKCDDAWITAVEEEV-VRASQCYMLFYAQK 524 (553)
Q Consensus 470 L~avV~H~G~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~-v~~~~aYlLfY~r~ 524 (553)
|+|||||.|+.++|||+++|+.++.|+.|||+.|++++... .....+|||||+|.
T Consensus 359 L~gv~Ch~G~L~gGHY~s~v~~~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 359 LLGVVCHNGTLNGGHYFSEVKRSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred EEEEEeecceecCceeEEeeeecCceEEechhheeeccceecccCCcceEEEEEec
Confidence 99999999999999999999999999999999999998653 44568999999985
No 19
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-52 Score=403.91 Aligned_cols=216 Identities=38% Similarity=0.645 Sum_probs=194.0
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhcc
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQHS 260 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 260 (553)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999986411
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccc-cccCceeeeccCCC
Q 008789 261 ANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTST-TYDPFMDISLNLDT 339 (553)
Q Consensus 261 ~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~-~~e~f~~LsL~i~~ 339 (553)
+||||||||..||+.|+. .+.++|.|++.+.++|..|+..+. +.++|++|+|++|.
T Consensus 33 ------~QqDa~EFl~~ll~~l~~-----------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~ 89 (240)
T cd02662 33 ------EQQDAHELFQVLLETLEQ-----------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPN 89 (240)
T ss_pred ------hhcCHHHHHHHHHHHHHH-----------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccc
Confidence 899999999999999982 456789999999999999999876 48999999999997
Q ss_pred CCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCc
Q 008789 340 GNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVR 419 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~ 419 (553)
... ....+|++||+.|+.+|.+++ +.|++| +..|.++|++|+|||+||.++..
T Consensus 90 ~~~---------------~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~- 142 (240)
T cd02662 90 QSS---------------GSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGR- 142 (240)
T ss_pred cCC---------------CCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCC-
Confidence 530 124599999999999999974 889999 56899999999999999999854
Q ss_pred ccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEecC-------
Q 008789 420 RMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHLK------- 492 (553)
Q Consensus 420 ~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~~------- 492 (553)
+...|+++.|.||+.| . ...|+|+|||+|.|+.++|||++|+|..
T Consensus 143 ~~~~K~~~~v~fp~~l--~--------------------------~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~ 194 (240)
T cd02662 143 GTSTKNSCKVSFPERL--P--------------------------KVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKE 194 (240)
T ss_pred CceeeeccEEECCCcc--C--------------------------CceEEEEEEEEEeccCCCceEEEEEeCCCcccccc
Confidence 7789999999999988 1 3479999999999999999999999986
Q ss_pred ---------------CcEEEEcCcceEEeccccc-cCCCceEEEEE
Q 008789 493 ---------------DQWYKCDDAWITAVEEEVV-RASQCYMLFYA 522 (553)
Q Consensus 493 ---------------~~W~~~nD~~V~~v~~~~v-~~~~aYlLfY~ 522 (553)
++||+|||+.|+++++++| ...+||||||+
T Consensus 195 ~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 195 PGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred cccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 8999999999999999999 89999999995
No 20
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-51 Score=414.51 Aligned_cols=323 Identities=30% Similarity=0.495 Sum_probs=274.7
Q ss_pred cCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHH
Q 008789 173 SCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQL 252 (553)
Q Consensus 173 ~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 252 (553)
+..+.|++||.|-|+|||||+++|-|.++|.+|.-++...+... .+.... ...++++++.+|..+....-..+.|..|
T Consensus 89 sRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td-~pd~s~-~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 89 SRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTD-LPDMSG-DEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccccc-chhhcc-hHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 45667899999999999999999999999999988765443311 111111 1128999999999999888889999999
Q ss_pred HHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCcee
Q 008789 253 LYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMD 332 (553)
Q Consensus 253 l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~ 332 (553)
...+..-.......+||||-|||..|||.+.+..++...+ -.+.+.|+|....+.+|..|-+.-...|+|..
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p--------~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~ 238 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHP--------QLFSNTFGGSYSDQKICQGCPHRYECEESFTT 238 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCc--------HHHHHHhcCccchhhhhccCCcccCcccccee
Confidence 9988766677888999999999999999999887766544 37788999999999999999999999999999
Q ss_pred eeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEee
Q 008789 333 ISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKR 412 (553)
Q Consensus 333 LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkR 412 (553)
|+|+|.. . +|+++|+.|.+.|.++|.|-|+|++|+++....|+..|++||.+|.|||||
T Consensus 239 l~l~i~~-~--------------------nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkR 297 (944)
T KOG1866|consen 239 LNLDIRH-Q--------------------NLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKR 297 (944)
T ss_pred eeeeccc-c--------------------hHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhh
Confidence 9999983 3 899999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec-
Q 008789 413 FEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL- 491 (553)
Q Consensus 413 f~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~- 491 (553)
|.++..+....|.+..+.||.+|||.||++.+..+....+............+.+|+|+|||+|.|.+.+|||++|++.
T Consensus 298 F~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~r 377 (944)
T KOG1866|consen 298 FDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQR 377 (944)
T ss_pred ccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhh
Confidence 9999888899999999999999999999998765422211111123345577889999999999999999999999975
Q ss_pred ----CCcEEEEcCcceEEeccccccC--------------------CCceEEEEEEecc
Q 008789 492 ----KDQWYKCDDAWITAVEEEVVRA--------------------SQCYMLFYAQKML 526 (553)
Q Consensus 492 ----~~~W~~~nD~~V~~v~~~~v~~--------------------~~aYlLfY~r~~~ 526 (553)
+++||+|||..|++.+-.++.. -+||||||+|.+-
T Consensus 378 r~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d 436 (944)
T KOG1866|consen 378 RGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDD 436 (944)
T ss_pred ccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcC
Confidence 5799999999999998665532 2799999999875
No 21
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-50 Score=420.65 Aligned_cols=322 Identities=33% Similarity=0.583 Sum_probs=266.0
Q ss_pred CCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcC-CCCccChHHH
Q 008789 174 CYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSG-DRTPYSPAQL 252 (553)
Q Consensus 174 ~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~~~i~p~~~ 252 (553)
....|.+||.|+|||||||++||||+.++.||+.++...+..............+..+...++..++.+ ....+.|..|
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f 375 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRF 375 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence 345678999999999999999999999999998888765544443122233445777777777777755 5667899999
Q ss_pred HHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCC----------------C-----------CCCCcccccee
Q 008789 253 LYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPI----------------K-----------DTGECHCVAHR 305 (553)
Q Consensus 253 l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~----------------~-----------~~~~~~~~i~~ 305 (553)
+..+.+..+.|.++.||||+||+.++++.||++........ . ......+.|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 99999999999999999999999999999998865432210 0 00112345789
Q ss_pred eeeEEEeeEEEeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCccccc
Q 008789 306 VFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCE 385 (553)
Q Consensus 306 ~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~ 385 (553)
+|.|++++.++|..||+.+.++++|.+++|+||.... .....+|++|++.|++.|.+++++.|.|+
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~--------------~~~~~~L~~C~~~ft~~ekle~~~~w~Cp 521 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGF--------------AGGKVSLEDCLSLFTKEEKLEGDEAWLCP 521 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEecccccc--------------cccccchHhhhccccchhhcccccccCCc
Confidence 9999999999999999999999999999999998541 01135899999999999999999999999
Q ss_pred cccccccee--EEEEeecCCceEEEEEeeeeecCCcccccccccccccCc-ccCCCccccccccccccCCcccccCCCCC
Q 008789 386 NCQERQDSV--KQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPF-CLDMNPYLSSSVVRNRFGNRMFAFEGDEL 462 (553)
Q Consensus 386 ~C~~~~~a~--k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (553)
+|+++.... |+..|.+||++|++||+||..+ .+...|....|+||. ..++.++... ..
T Consensus 522 ~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~--~~~~~k~~~~v~~~~~~~~~~~~~~~-----------------~~ 582 (653)
T KOG1868|consen 522 RCKHKESSKTLKKLTILRLPKILIIHLKRFSSD--GNSFNKLSTGVDFPLREADLSPRFAE-----------------KG 582 (653)
T ss_pred cccCcccccccceeeeecCCHHHHHHHHHhccC--cccccccceeeccchHhhhhchhccc-----------------cC
Confidence 999999885 9999999999999999999987 345788999999998 5777664432 22
Q ss_pred CCCceEEEEEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEEeccccccCCCceEEEEEEecccc
Q 008789 463 DTSTEFEIFAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKMLYY 528 (553)
Q Consensus 463 ~~~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~~~~ 528 (553)
.....|+|+|||+|.|++++|||+||++. .+.|+.|||+.|+.++...+..+.||||||+|.+...
T Consensus 583 ~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 583 NNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFE 650 (653)
T ss_pred CCccceeeEEEEeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCccc
Confidence 33455999999999999999999999976 5889999999999999999999999999999987643
No 22
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-49 Score=379.07 Aligned_cols=227 Identities=43% Similarity=0.847 Sum_probs=206.3
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhcc
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQHS 260 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 260 (553)
||.|.|||||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCC
Q 008789 261 ANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTG 340 (553)
Q Consensus 261 ~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~ 340 (553)
.||||+||+.+||+.|+ +.+.++|+|++.++++|..|+..+.+.++|+.|+|++|..
T Consensus 21 ------~QqDa~Ef~~~ll~~l~-----------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~ 77 (230)
T cd02674 21 ------DQQDAQEFLLFLLDGLH-----------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSG 77 (230)
T ss_pred ------hhhhHHHHHHHHHHHHh-----------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccc
Confidence 89999999999999998 2678899999999999999999999999999999999974
Q ss_pred CCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCcc
Q 008789 341 NCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRR 420 (553)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~ 420 (553)
.. .....+|+++|+.|+.+|.+++.+++.|++|++.+.+.++..|.++|++|+|||+||.++ ..
T Consensus 78 ~~--------------~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~--~~ 141 (230)
T cd02674 78 SG--------------DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS--RG 141 (230)
T ss_pred cC--------------CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecC--CC
Confidence 30 013459999999999999999999999999999999999999999999999999999988 36
Q ss_pred cccccccccccCc-ccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEecC--CcEEE
Q 008789 421 MSRKIDRYMQFPF-CLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHLK--DQWYK 497 (553)
Q Consensus 421 ~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~~--~~W~~ 497 (553)
...|+++.|.||. .||+.+|+... ......+|+|+|||+|.|..++|||++|+|.. ++||+
T Consensus 142 ~~~K~~~~v~~~~~~l~l~~~~~~~----------------~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~ 205 (230)
T cd02674 142 STRKLTTPVTFPLNDLDLTPYVDTR----------------SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYK 205 (230)
T ss_pred CcccCCceEeccccccccccccCcc----------------cCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEE
Confidence 6889999999995 69999886321 33457789999999999999999999999986 89999
Q ss_pred EcCcceEEeccccccCCCceEEEEE
Q 008789 498 CDDAWITAVEEEVVRASQCYMLFYA 522 (553)
Q Consensus 498 ~nD~~V~~v~~~~v~~~~aYlLfY~ 522 (553)
|||+.|++++.+++...+||||||+
T Consensus 206 fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 206 FDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred EcCCeEEEcCHHHccCCCceEEEeC
Confidence 9999999999999989999999996
No 23
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=100.00 E-value=5e-47 Score=359.48 Aligned_cols=408 Identities=20% Similarity=0.320 Sum_probs=312.3
Q ss_pred ccccccCCCCCCCCcc--CCCCCCeEEecccCCcccc----hhHHhhhcCCCCCeEEEECCC-CcEEEcCCCCEEeCCCh
Q 008789 44 SSVKNHQTEIPRCCFC--NGYQKRLYLCLICSSISCS----SHTLLHSQCENGHDIAVDIER-SELYCVLCCDQVYDPDF 116 (553)
Q Consensus 44 ~~~~~~~~~~~~c~~C--~~~~~~~~~Cl~Cg~~~c~----~h~~~H~~~~~~H~~~~~~~~-~~~~c~~c~~~v~d~~~ 116 (553)
.++.++.++++....| +.+..++|+||.||+.+.| +||+.|+. +++|++++++.+ +..|+.+-++++.|+.+
T Consensus 17 dtv~r~vldfd~ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l-~~ghhvf~nl~telkfyvlpe~~ei~d~s~ 95 (442)
T KOG2026|consen 17 ETVVRRVLDFDFEKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSL-EEGHHVFLNLSTELKFYVLPENYEIDDPSL 95 (442)
T ss_pred hhhhhhhccccCCCCCcccccccceeeeeeeCchhhCcCccccchhccc-cccccceeccccceeEEecchhccccCchh
Confidence 4667888899998888 4566788999999999998 99999999 689999999988 99999999999999987
Q ss_pred hhHHHHhhhhccCCCCCCCCCccccccccccccchhhhhhhhhhhhhhhccccccccCCCCcccccccCCCcchhHHHHH
Q 008789 117 DKIVMLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQLVSMRDLRAKSCYPLGLRGLNNLGSTCFMNSVLQ 196 (553)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNtCY~NsvLQ 196 (553)
.+++... .+.+.....+ ...+ ....+... .....|.||++||.|+.++-|+|++||
T Consensus 96 ~~ikhsl------kptftr~~cp--~lD~-------------~nr~~~ra---Ld~~tYLpG~VGLnNik~~dy~n~vl~ 151 (442)
T KOG2026|consen 96 GDIKHSL------KPTFTKTDCP--NLDK-------------VNRKLSRA---LDGSTYLPGFVGLNNIKANDYANAVLQ 151 (442)
T ss_pred hhhhccc------cceeehhhcc--cccc-------------cchhhhhh---hcCCcceeeeeccchhhhHHHHHHHHH
Confidence 7654221 1111110000 0000 00000111 133778999999999999999999999
Q ss_pred HHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC--CCccChHHHHHHHHhcc-CCCCCCCcCCHHH
Q 008789 197 ALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD--RTPYSPAQLLYSWWQHS-ANLASYEQQDAHE 273 (553)
Q Consensus 197 ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~i~p~~~l~~l~~~~-~~f~~~~QqDA~E 273 (553)
+|.+.+++|+|++...-... ....+...|..+.+.+|++. +..++|++|++++...+ ..|..++|.|+.|
T Consensus 152 ~ls~v~PlRnyFl~~~n~~d-------~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~Dpve 224 (442)
T KOG2026|consen 152 ALSHVVPLRNYFLLEENYFD-------NLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVE 224 (442)
T ss_pred HHhccchhhhhhcccccccc-------hhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHH
Confidence 99999999999987643221 23458888999999999886 67899999999986554 4799999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCC----CCCccccccCceeeeccCCCCCCCCccccc
Q 008789 274 FFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMS----CGYTSTTYDPFMDISLNLDTGNCPSTDLAN 349 (553)
Q Consensus 274 fl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~----C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~ 349 (553)
|+.|||+.||.+.+..+.+ .++|++.|+|.++....-.. -........||+.|+|++|+.+ ...+..+
T Consensus 225 Flswllntlhs~l~~~k~~-------~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~p-lfkD~~e 296 (442)
T KOG2026|consen 225 FLSWLLNTLHSDLRGSKKA-------SSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPP-LFKDVME 296 (442)
T ss_pred HHHHHHHHHHHHhCCCCCc-------hhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCC-cccchhh
Confidence 9999999999987766532 37999999999986554333 2223455679999999999977 3333333
Q ss_pred CCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCccccccccccc
Q 008789 350 KSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYM 429 (553)
Q Consensus 350 ~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V 429 (553)
+..+ +.+.|-+.|..|.....-+ + .....+ +++++.++|++|++|++||..+ ++...|+.+.|
T Consensus 297 ~nii-----PQV~l~~lL~Kf~g~t~~e----~-----~~~~~~-~rf~l~k~P~ylifh~~rF~kN--n~f~ekNpTl~ 359 (442)
T KOG2026|consen 297 KNII-----PQVALFDLLKKFDGETVTE----V-----VTPKLA-MRFRLTKLPRYLIFHMKRFKKN--NFFKEKNPTLV 359 (442)
T ss_pred hccc-----ccchHHHHHHHhcCceeee----e-----cchhhh-hheeeecCCceEEEEeeecccc--CcccccCCcee
Confidence 3333 4558899999887654432 1 111223 8889999999999999999987 68899999999
Q ss_pred ccC-cccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEEe
Q 008789 430 QFP-FCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITAV 506 (553)
Q Consensus 430 ~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~v 506 (553)
+|| ..+|+.+....... ....-..|.|.|.+.|. ..-|||...+++ .++||.++|..|++.
T Consensus 360 ~f~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~ 423 (442)
T KOG2026|consen 360 EFPYSEVDILHVLDRLKA--------------VNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTER 423 (442)
T ss_pred eccCCccchhhhhhhccc--------------ccCccccccchhhhhcC--cccCceEEEEEeCCCcceEEecccchhhh
Confidence 999 47777766654321 11223689999999997 678999999976 579999999999999
Q ss_pred ccccccCCCceEEEEEEe
Q 008789 507 EEEVVRASQCYMLFYAQK 524 (553)
Q Consensus 507 ~~~~v~~~~aYlLfY~r~ 524 (553)
.++.+..+++||.+|++.
T Consensus 424 ~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 424 LPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hhHHHHHHHHHHHHHhcc
Confidence 999999999999999885
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-46 Score=358.12 Aligned_cols=235 Identities=23% Similarity=0.408 Sum_probs=186.4
Q ss_pred cccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhccC
Q 008789 182 LNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQHSA 261 (553)
Q Consensus 182 L~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~~ 261 (553)
|.|.||+||+||.+|+|.++ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i-------------------------------------------------------~~~~~ 26 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI-------------------------------------------------------GKINT 26 (245)
T ss_pred ceecCCeeeehhHHHHHHHH-------------------------------------------------------hhhhh
Confidence 78999999999999999542 22346
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCC--CCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCC
Q 008789 262 NLASYEQQDAHEFFISMLDGIHENGVKARSPIK--DTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDT 339 (553)
Q Consensus 262 ~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~--~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~ 339 (553)
+|.+++||||||||++||+.|+++......... ........+.++|+|++++.++|..|++++.+.++|++|+|++|.
T Consensus 27 ~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~ 106 (245)
T cd02673 27 EFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMID 106 (245)
T ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceecccccc
Confidence 899999999999999999999975432211000 001111234578999999999999999999999999999999986
Q ss_pred CCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCc
Q 008789 340 GNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVR 419 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~ 419 (553)
.. ...++++++.|...+.++ +.|++|+.. .+.|+.+|.++|+||+|||+||.+..
T Consensus 107 ~~------------------~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~-- 161 (245)
T cd02673 107 NK------------------LDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI-- 161 (245)
T ss_pred CC------------------cchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--
Confidence 32 236888999988877775 899999986 78899999999999999999997652
Q ss_pred ccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEec---CCcE
Q 008789 420 RMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHL---KDQW 495 (553)
Q Consensus 420 ~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~---~~~W 495 (553)
+....+.++ .++|.+|.. ....|+|+|||+|.|. +++|||+||+|. +++|
T Consensus 162 ----~~~~~~~~~-~~~~~~~~~---------------------~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~W 215 (245)
T cd02673 162 ----ATSDYLKKN-EEIMKKYCG---------------------TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSW 215 (245)
T ss_pred ----ccccccccc-ccccccccC---------------------CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeE
Confidence 122222221 355666543 2457999999999998 899999999997 6899
Q ss_pred EEEcCcceEEecccccc---CCCceEEEEE
Q 008789 496 YKCDDAWITAVEEEVVR---ASQCYMLFYA 522 (553)
Q Consensus 496 ~~~nD~~V~~v~~~~v~---~~~aYlLfY~ 522 (553)
|.|||+.|+++++++|+ .++||||||+
T Consensus 216 y~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 216 LYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred EEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 99999999999999998 5799999995
No 25
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-46 Score=349.94 Aligned_cols=218 Identities=26% Similarity=0.421 Sum_probs=183.6
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhcc
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQHS 260 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 260 (553)
||.|.|||||+|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999977
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCC
Q 008789 261 ANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTG 340 (553)
Q Consensus 261 ~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~ 340 (553)
.||||+||+..||+.|++................++|.++|.|++.+++.| |+..+.+.|+|++|+|+|...
T Consensus 21 ------~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~ 92 (228)
T cd02665 21 ------QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGY 92 (228)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCC
Confidence 699999999999999998875432211112233468999999999987776 778889999999999999764
Q ss_pred CCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCcc
Q 008789 341 NCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRR 420 (553)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~ 420 (553)
. +|++||+.|+.+|.+++++. .....+.++..|.++|+||+|||+||.++. .
T Consensus 93 ~--------------------~L~e~L~~~~~ee~l~~~~~------~~~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~ 144 (228)
T cd02665 93 G--------------------NLHECLEAAMFEGEVELLPS------DHSVKSGQERWFTELPPVLTFELSRFEFNQ--G 144 (228)
T ss_pred C--------------------CHHHHHHHhhhhcccccccc------cchhhhhhhhhhhhCChhhEEEeEeeEEcC--C
Confidence 4 99999999999988876432 223446677789999999999999999983 5
Q ss_pred cccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec--CCcEEEE
Q 008789 421 MSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL--KDQWYKC 498 (553)
Q Consensus 421 ~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~~W~~~ 498 (553)
...|+++.|.||..|. ...|+|+|||+|.|.+++|||++|+|. +++||+|
T Consensus 145 ~~~Ki~~~v~FP~~l~----------------------------~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~f 196 (228)
T cd02665 145 RPEKIHDKLEFPQIIQ----------------------------QVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKY 196 (228)
T ss_pred ccEECCEEEEeeCccC----------------------------CceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEE
Confidence 6789999999999871 237999999999999999999999975 6899999
Q ss_pred cCcceEEeccccccC--------CCceEEEEE
Q 008789 499 DDAWITAVEEEVVRA--------SQCYMLFYA 522 (553)
Q Consensus 499 nD~~V~~v~~~~v~~--------~~aYlLfY~ 522 (553)
||+.|++++.++|.. ..||||||.
T Consensus 197 dD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 197 NDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 999999999998863 479999994
No 26
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-47 Score=388.66 Aligned_cols=305 Identities=29% Similarity=0.472 Sum_probs=262.4
Q ss_pred cCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHH
Q 008789 173 SCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQL 252 (553)
Q Consensus 173 ~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 252 (553)
+....|++||+|.|.||||||.||+|+.+..||+......... ..+...+..+|+++|..|..+ ..|++..+|
T Consensus 187 SKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~------p~grdSValaLQr~Fynlq~~-~~PvdTtel 259 (1089)
T COG5077 187 SKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH------PRGRDSVALALQRLFYNLQTG-EEPVDTTEL 259 (1089)
T ss_pred cccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC------CCccchHHHHHHHHHHHHhcc-CCCcchHHh
Confidence 4556899999999999999999999999999999987654221 123445778899999999766 458899999
Q ss_pred HHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCcee
Q 008789 253 LYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMD 332 (553)
Q Consensus 253 l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~ 332 (553)
...++. ..+....|+|.|||-+-|.|.|+.......-. ..+..+|-|++.+.+.|.+-.+.+.+.+.||+
T Consensus 260 trsfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~VE--------naln~ifVgkmksyikCvnvnyEsarvedfwd 329 (1089)
T COG5077 260 TRSFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTVVE--------NALNGIFVGKMKSYIKCVNVNYESARVEDFWD 329 (1089)
T ss_pred hhhcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCChhh--------hHHhHHHHHHhhceeeEEEechhhhhHHHHHH
Confidence 887733 34667799999999999999999855443221 46778999999999999999999999999999
Q ss_pred eeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEee
Q 008789 333 ISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKR 412 (553)
Q Consensus 333 LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkR 412 (553)
+.|++.... +|+++++.|.+.|.++|+|+|.|++=| -+.|.|...|.+||+||.+||||
T Consensus 330 iqlNvK~~k--------------------nLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKR 388 (1089)
T COG5077 330 IQLNVKGMK--------------------NLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKR 388 (1089)
T ss_pred HHhcccchh--------------------hHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHH
Confidence 999998755 999999999999999999999998855 47899999999999999999999
Q ss_pred eeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEe--
Q 008789 413 FEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLH-- 490 (553)
Q Consensus 413 f~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr-- 490 (553)
|+++.......||+++.+||+++||.||++....+ ....++.|.|+||++|.|....|||+|++|
T Consensus 389 FeyDfe~d~mvKINDryEFP~eiDl~pfld~da~k-------------sen~d~vY~LygVlVHsGDl~~GHyYallKpe 455 (1089)
T COG5077 389 FEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADK-------------SENSDAVYVLYGVLVHSGDLHEGHYYALLKPE 455 (1089)
T ss_pred hccccccCceeeecccccCcchhccccccCchhhh-------------hcccCcEEEEEEEEEeccccCCceEEEEeccc
Confidence 99998788899999999999999999999876432 233458999999999999999999999999
Q ss_pred cCCcEEEEcCcceEEeccccccC----------------------CCceEEEEEEecccc
Q 008789 491 LKDQWYKCDDAWITAVEEEVVRA----------------------SQCYMLFYAQKMLYY 528 (553)
Q Consensus 491 ~~~~W~~~nD~~V~~v~~~~v~~----------------------~~aYlLfY~r~~~~~ 528 (553)
.+|+||+|||++|+++...+|+. -.||||+|-|+++..
T Consensus 456 ~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~d 515 (1089)
T COG5077 456 KDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLD 515 (1089)
T ss_pred cCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHH
Confidence 58999999999999999888853 268999999998643
No 27
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-46 Score=374.23 Aligned_cols=299 Identities=20% Similarity=0.285 Sum_probs=219.0
Q ss_pred cccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCcc----------ccccCC------CCccchHHHHHHHHHHHhcCC
Q 008789 180 RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHE----------VCRKRS------SDRLCLLCDIYVFFSAVFSGD 243 (553)
Q Consensus 180 ~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~----------~~~~~~------~~~~~l~~~l~~l~~~l~~~~ 243 (553)
+||.|+||||||||+||+|+++|+||++++....... ...... ....+++.+|+.||..|+.+.
T Consensus 2 vGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s~ 81 (343)
T cd02666 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHSN 81 (343)
T ss_pred CCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999999999999999999997542211 000000 012368999999999999888
Q ss_pred CCccChHHHHHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCC-----CCCCCCccccceeeeeEEEeeEEEeC
Q 008789 244 RTPYSPAQLLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSP-----IKDTGECHCVAHRVFSGQLRSDVTCM 318 (553)
Q Consensus 244 ~~~i~p~~~l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~-----~~~~~~~~~~i~~~F~g~l~~~i~C~ 318 (553)
...++|..++..+.. .||||+||+..||+.|+.+....... ........++|+++|.|++.+.++|.
T Consensus 82 ~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~ 153 (343)
T cd02666 82 TRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPE 153 (343)
T ss_pred CCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEec
Confidence 889999999986632 89999999999999999887543321 01223345799999999999999999
Q ss_pred CCC---CccccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeE
Q 008789 319 SCG---YTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVK 395 (553)
Q Consensus 319 ~C~---~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k 395 (553)
.|+ ..+.+.|+|++|+|+|+.... .........+|.++|+.|+..|.
T Consensus 154 ~~~~~~~~s~~~E~F~~L~l~I~~~~~----------~~~~~~~~~~L~d~L~~~~~~e~-------------------- 203 (343)
T cd02666 154 SMGNQPSVRTKTERFLSLLVDVGKKGR----------EIVVLLEPKDLYDALDRYFDYDS-------------------- 203 (343)
T ss_pred ccCCCCCCccccceeEEEEEecCcccc----------cccccCCCCCHHHHHHHhcChhh--------------------
Confidence 997 788999999999999986320 00111134699999999997776
Q ss_pred EEEeecCCceEEEEEeeeeecCCcccccccccccccCcccCCCccccccccccccCC------ccccc----C-CCCCCC
Q 008789 396 QMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGN------RMFAF----E-GDELDT 464 (553)
Q Consensus 396 ~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~------~~~~~----~-~~~~~~ 464 (553)
|.++|++|.|||| +.+. .....+..++.+||...|..+++........... ++... + .=....
T Consensus 204 ---~~~~P~vl~~qlq-~~~~--~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (343)
T cd02666 204 ---LTKLPQRSQVQAQ-LAQP--LQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLK 277 (343)
T ss_pred ---hccCCHHHHHHHh-hccc--ccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 7899999999999 2221 3333445555555555555444432211110000 00000 0 002346
Q ss_pred CceEEEEEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEEeccccccC------CCceEEEEE
Q 008789 465 STEFEIFAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITAVEEEVVRA------SQCYMLFYA 522 (553)
Q Consensus 465 ~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~------~~aYlLfY~ 522 (553)
...|+|+|||+|.|..++|||++|+|. ++.||+|||..|++++.++|+. .+||||+|.
T Consensus 278 ~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 278 SYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred CCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 788999999999999999999999986 4799999999999999988875 589999994
No 28
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.9e-45 Score=362.03 Aligned_cols=257 Identities=36% Similarity=0.603 Sum_probs=204.3
Q ss_pred ccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCcccc-ccCCCCccchHHHHHHHHHHHhcC--CCCccChHHHHHH
Q 008789 179 LRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVC-RKRSSDRLCLLCDIYVFFSAVFSG--DRTPYSPAQLLYS 255 (553)
Q Consensus 179 ~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~~--~~~~i~p~~~l~~ 255 (553)
++||.|.||||||||+||+|+++|+|+++++......... ........++.++|..+|..++.. ....+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 4799999999999999999999999999998752111111 111223446999999999999988 6778999999999
Q ss_pred HHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCC---CCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCcee
Q 008789 256 WWQHSANLASYEQQDAHEFFISMLDGIHENGVKARS---PIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMD 332 (553)
Q Consensus 256 l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~---~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~ 332 (553)
++...+.|..++||||+|||..||+.|+++...... .........+.+.++|.+++...+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 999988899999999999999999999987554321 00011223467889999999999999999754
Q ss_pred eeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEee
Q 008789 333 ISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKR 412 (553)
Q Consensus 333 LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkR 412 (553)
+..|.++|++|+|+|+|
T Consensus 152 ---------------------------------------------------------------~~~~~~~P~~L~i~l~R 168 (269)
T PF00443_consen 152 ---------------------------------------------------------------QSSISSLPPILIIQLKR 168 (269)
T ss_dssp ---------------------------------------------------------------EEEEEEBBSEEEEEEE-
T ss_pred ---------------------------------------------------------------ccccccccceeeecccc
Confidence 34688999999999999
Q ss_pred eeecCCcccccccccccccC-cccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec
Q 008789 413 FEHFPVRRMSRKIDRYMQFP-FCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL 491 (553)
Q Consensus 413 f~~~~~~~~~~Ki~~~V~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~ 491 (553)
|.++...+...|+...|.|| ..|||++++..+.. .......|+|+|||+|.|..++|||+||+|.
T Consensus 169 ~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~--------------~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~ 234 (269)
T PF00443_consen 169 FEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNS--------------ECQSNVKYRLVAVIVHYGSADSGHYVAYVRD 234 (269)
T ss_dssp EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCC--------------THTSSSEEEEEEEEEEESSTTSEEEEEEEEE
T ss_pred ceeccccccccccccccccCchhhhhhhhhccccc--------------cccccceeeehhhhccccccccceEEEeecc
Confidence 98886566789999999999 69999998875311 1124679999999999999999999999987
Q ss_pred CC--cEEEEcCcceEEeccccccC---CCceEEEE
Q 008789 492 KD--QWYKCDDAWITAVEEEVVRA---SQCYMLFY 521 (553)
Q Consensus 492 ~~--~W~~~nD~~V~~v~~~~v~~---~~aYlLfY 521 (553)
++ +|++|||+.|++++.++|.. .+||||||
T Consensus 235 ~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 235 SDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp TTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 54 69999999999999999988 99999999
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-41 Score=330.67 Aligned_cols=245 Identities=42% Similarity=0.726 Sum_probs=205.6
Q ss_pred ccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhcc
Q 008789 181 GLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQHS 260 (553)
Q Consensus 181 GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~~ 260 (553)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999999
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCC
Q 008789 261 ANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTG 340 (553)
Q Consensus 261 ~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~ 340 (553)
.||||+|||..+|+.|+.+...............+.+.++|.|.+...+.|..|+..+.....+..++|++|..
T Consensus 21 ------~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~ 94 (255)
T cd02257 21 ------EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVK 94 (255)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCC
Confidence 89999999999999999876543221111122236899999999999999999998888888888888888864
Q ss_pred CCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccc--cccceeEEEEeecCCceEEEEEeeeeecCC
Q 008789 341 NCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQ--ERQDSVKQMSIKRLPLVLCLHIKRFEHFPV 418 (553)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~--~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~ 418 (553)
.. ...+|+++|+.++..|.+.+ ..|..|+ +.+.+.++..|.++|++|+|+++||.++.
T Consensus 95 ~~----------------~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~- 154 (255)
T cd02257 95 GL----------------PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNE- 154 (255)
T ss_pred CC----------------CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeecc-
Confidence 20 23599999999999998873 6788888 67888999999999999999999999873
Q ss_pred cccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEecC--CcE
Q 008789 419 RRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHLK--DQW 495 (553)
Q Consensus 419 ~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~~--~~W 495 (553)
.+...|++..|.||.+|++.+++... ............|+|+|||+|.|. .++|||++|+|.. ++|
T Consensus 155 ~~~~~k~~~~v~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W 223 (255)
T cd02257 155 DGTKEKLNTKVSFPLELDLSPYLSEG-----------EKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKW 223 (255)
T ss_pred ccccccCCCeEeCCCcccCccccccc-----------cccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCce
Confidence 26688999999999999999887531 001123446779999999999999 5999999999986 899
Q ss_pred EEEcCcceEEeccccc-----cCCCceEEEEE
Q 008789 496 YKCDDAWITAVEEEVV-----RASQCYMLFYA 522 (553)
Q Consensus 496 ~~~nD~~V~~v~~~~v-----~~~~aYlLfY~ 522 (553)
|+|||..|++++.+++ ...+||||||+
T Consensus 224 ~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 224 YKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred EEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 9999999999999998 57899999995
No 30
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-42 Score=378.37 Aligned_cols=332 Identities=30% Similarity=0.592 Sum_probs=275.4
Q ss_pred cCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccc-cCCCCccchHHHHHHHHHHHhcCCCCccChHH
Q 008789 173 SCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCR-KRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQ 251 (553)
Q Consensus 173 ~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~ 251 (553)
....+|.+||.|+|||||||+.+|+|.+.+.++++++...+...... ........+...+..+...+|++....+.|..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 44568999999999999999999999999999999987655542111 11223445677788899999999887899999
Q ss_pred HHHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCC--CC-------------------CCCCccccceeeeeEE
Q 008789 252 LLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSP--IK-------------------DTGECHCVAHRVFSGQ 310 (553)
Q Consensus 252 ~l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~--~~-------------------~~~~~~~~i~~~F~g~ 310 (553)
+...+....++|.++.|||.+||+.+++|.+|+........ .. ......+++.++|.|.
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~ 399 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGT 399 (842)
T ss_pred hhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecce
Confidence 99999999999999999999999999999999875433222 00 1123357899999999
Q ss_pred EeeEEEeCCCCCccccccCceeeeccCCCCCCC-----------------------------------------------
Q 008789 311 LRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCP----------------------------------------------- 343 (553)
Q Consensus 311 l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~----------------------------------------------- 343 (553)
+.+.+.|..|+.++.++++|..|+|++|.....
T Consensus 400 ~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 479 (842)
T KOG1870|consen 400 YKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELK 479 (842)
T ss_pred ecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcc
Confidence 999999999999999999999999999964321
Q ss_pred --------------------------------------------------------------------------------
Q 008789 344 -------------------------------------------------------------------------------- 343 (553)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (553)
T Consensus 480 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 559 (842)
T KOG1870|consen 480 PVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLS 559 (842)
T ss_pred cceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccC
Confidence
Q ss_pred ----------------------C-------------ccccc---------------------------C-----C-----
Q 008789 344 ----------------------S-------------TDLAN---------------------------K-----S----- 351 (553)
Q Consensus 344 ----------------------~-------------~~~~~---------------------------~-----~----- 351 (553)
. ..... . .
T Consensus 560 ~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (842)
T KOG1870|consen 560 GAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQ 639 (842)
T ss_pred CCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccc
Confidence 0 00000 0 0
Q ss_pred ---------C-------------CC-------------------------CCCCCccCHHHHHHhccCCcccCCCCcccc
Q 008789 352 ---------L-------------KP-------------------------SDNTYVSTLLGCLDLFTKPEKLGSDQKFFC 384 (553)
Q Consensus 352 ---------~-------------~~-------------------------~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C 384 (553)
. .+ .......+|++||+.|+.+|.|..++.++|
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C 719 (842)
T KOG1870|consen 640 SLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYC 719 (842)
T ss_pred cccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccC
Confidence 0 00 000125689999999999999999999999
Q ss_pred cccccccceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCc-ccCCCccccccccccccCCcccccCCCCCC
Q 008789 385 ENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPF-CLDMNPYLSSSVVRNRFGNRMFAFEGDELD 463 (553)
Q Consensus 385 ~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (553)
+.|++.+.|+|+..+.+||++|+||||||.+. +....|+.+.|+||. .||+++|+...
T Consensus 720 ~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~--r~~~~k~~~~v~fPi~~ld~s~~~~~~------------------- 778 (842)
T KOG1870|consen 720 PQCKELRQATKKLDLWRLPEILIIHLKRFQYS--RESSSKVKTKVEFPLGSLDLSEFVVNK------------------- 778 (842)
T ss_pred hHHHHHHHHhhhhhhhhCCceEEEEeecceee--chhhhhhCccccCCCcCCCcchhhccC-------------------
Confidence 99999999999999999999999999999998 666799999999998 79999998753
Q ss_pred CCceEEEEEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEEeccccccCCCceEEEEEEec
Q 008789 464 TSTEFEIFAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKM 525 (553)
Q Consensus 464 ~~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~ 525 (553)
....|+|+||++|.|.+.+|||+||.|. +++||.|||+.|++++++++....||+|||+|++
T Consensus 779 ~~~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 779 EQVLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred ccceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 1279999999999999999999999986 7899999999999999999999999999999974
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.3e-41 Score=327.15 Aligned_cols=240 Identities=25% Similarity=0.390 Sum_probs=193.2
Q ss_pred CcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHH
Q 008789 177 LGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSW 256 (553)
Q Consensus 177 ~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l 256 (553)
.++.||.|.|.|||+||+||+|.++|+||+++.. ....|. ...|++|+|..||.. +
T Consensus 13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~---~~~~~~----~~~~l~~el~~lfs~-------------~---- 68 (268)
T cd02672 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAI---ILVACP----KESCLLCELGYLFST-------------L---- 68 (268)
T ss_pred ccccccccCCccchHHHHHHHHHhcHHHHHHHHh---hcccCC----cCccHHHHHHHHHHH-------------H----
Confidence 3589999999999999999999999999997321 112222 367999999999911 1
Q ss_pred HhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeecc
Q 008789 257 WQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLN 336 (553)
Q Consensus 257 ~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~ 336 (553)
.+-|-.+|++.+..+.... + ..|++++.+.+++.+|+|+
T Consensus 69 --------------iq~F~~fll~~i~~~~~~~-----------------~----------~~C~~~s~~~~~~~~LsLp 107 (268)
T cd02672 69 --------------IQNFTRFLLETISQDQLGT-----------------P----------FSCGTSRNSVSLLYTLSLP 107 (268)
T ss_pred --------------HHHHHHHHHHHHHHHhccc-----------------C----------CCCCceeeccccceeeeee
Confidence 1557788899988654321 1 6799999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCc----eEEEEEee
Q 008789 337 LDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPL----VLCLHIKR 412 (553)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~----vL~i~LkR 412 (553)
+|... .....+|.+||+.|+..|.. ++++|++|++++.++|+.+|.++|+ ||+|||||
T Consensus 108 ip~~~---------------~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkr 169 (268)
T cd02672 108 LGSTK---------------TSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSV 169 (268)
T ss_pred cCccc---------------cccCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEec
Confidence 99632 11245999999999999865 4689999999999999999999999 99999999
Q ss_pred eeecCCc-----ccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeE
Q 008789 413 FEHFPVR-----RMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYV 486 (553)
Q Consensus 413 f~~~~~~-----~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~ 486 (553)
|...... ....|++..|.||..+++..+... .......|+|+|||+|.|. .++|||+
T Consensus 170 f~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~-----------------~~~~~~~Y~L~gvV~hig~~~~~GHyv 232 (268)
T cd02672 170 TNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNR-----------------GQESIYKYELVGYVCEINDSSRGQHNV 232 (268)
T ss_pred cChhhcccCcceeEEEecCCeecccccccchhhhcc-----------------CCCCCceEEEEEEEEEecCCCCCCcEE
Confidence 9865311 234678889999988877654432 1234578999999999998 5999999
Q ss_pred EEEec------CCcEEEEcCcceEEeccccccCCCceEEEEE
Q 008789 487 TYLHL------KDQWYKCDDAWITAVEEEVVRASQCYMLFYA 522 (553)
Q Consensus 487 a~vr~------~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~ 522 (553)
||+|. .++||.|||..|+++++ .||||||+
T Consensus 233 a~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 233 VFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred EEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 99997 57899999999999998 99999995
No 32
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-41 Score=339.55 Aligned_cols=299 Identities=23% Similarity=0.391 Sum_probs=239.2
Q ss_pred cCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHH
Q 008789 173 SCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQL 252 (553)
Q Consensus 173 ~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 252 (553)
...+.|++||.|..-|||+|+.+|+|+..|.|++.+.... ...+....+
T Consensus 81 ~~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~-------------------------------~~~~et~dl 129 (1203)
T KOG4598|consen 81 DENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE-------------------------------NDSLETKDL 129 (1203)
T ss_pred ccCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC-------------------------------cccccchhh
Confidence 4457789999999999999999999999999999875321 112233334
Q ss_pred HHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCcee
Q 008789 253 LYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMD 332 (553)
Q Consensus 253 l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~ 332 (553)
-+.++.. .-..++|+|.+|+-+.++|+|+-..+..+.. ..|.++++|++..-+.|.+|+..+++.+.|++
T Consensus 130 t~sfgw~--s~ea~~qhdiqelcr~mfdalehk~k~t~~~--------~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld 199 (1203)
T KOG4598|consen 130 TQSFGWT--SNEAYDQHDVQELCRLMFDALEHKWKGTEHE--------KLIQDLYRGTMEDFVACLKCGRESVKTDYFLD 199 (1203)
T ss_pred HhhcCCC--cchhhhhhhHHHHHHHHHHHHHhhhcCchHH--------HHHHHHhcchHHHHHHHHHcCccccccceeec
Confidence 4444221 1235799999999999999998654433222 48899999999999999999999999999999
Q ss_pred eeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEee
Q 008789 333 ISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKR 412 (553)
Q Consensus 333 LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkR 412 (553)
|.|++.+.... ..-.+++++|.+|..+|.++|.|.|.|++|++++.|.|.++|+.+|-+|.|||||
T Consensus 200 ~pl~v~pfg~~--------------~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkr 265 (1203)
T KOG4598|consen 200 LPLAVKPFGAI--------------HAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKR 265 (1203)
T ss_pred ccccccCCcch--------------hhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeec
Confidence 99988764310 1123899999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcccccccccccccCcccCCCcccccccccccc-------CCccc---------c--------------------
Q 008789 413 FEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRF-------GNRMF---------A-------------------- 456 (553)
Q Consensus 413 f~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~-------~~~~~---------~-------------------- 456 (553)
|.++..+.-..|++++|.||..|||..|+......... .++.. .
T Consensus 266 fdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~ 345 (1203)
T KOG4598|consen 266 FDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSE 345 (1203)
T ss_pred ccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCcc
Confidence 99998777889999999999999999999765311000 00000 0
Q ss_pred -------c------CCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEEecccccc---------
Q 008789 457 -------F------EGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITAVEEEVVR--------- 512 (553)
Q Consensus 457 -------~------~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~--------- 512 (553)
. +.....++..|+|+||.+|.|++.+|||+||+|+ +++||.|||.+|+.++.+++.
T Consensus 346 n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~ 425 (1203)
T KOG4598|consen 346 NVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSG 425 (1203)
T ss_pred ccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCC
Confidence 0 0002346678999999999999999999999985 789999999999999988884
Q ss_pred ----CCCceEEEEEEecc
Q 008789 513 ----ASQCYMLFYAQKML 526 (553)
Q Consensus 513 ----~~~aYlLfY~r~~~ 526 (553)
+.+||||.|+|.+.
T Consensus 426 ~~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 426 WNQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred ccccCcchhhhhhhhcCc
Confidence 35899999999764
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-39 Score=363.29 Aligned_cols=305 Identities=31% Similarity=0.493 Sum_probs=262.6
Q ss_pred CCCCcc-cccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHH
Q 008789 174 CYPLGL-RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQL 252 (553)
Q Consensus 174 ~~~~g~-~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 252 (553)
....|+ +||.|+||||||||+||+|+.++.||..+......... ..+...+..+|+.+|..|...+..++++..+
T Consensus 164 k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~----~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~ 239 (1093)
T KOG1863|consen 164 KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGH----EDPRRSIPLALQRLFYELQMSKRKYVDTSEL 239 (1093)
T ss_pred hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCc----ccccchHHHHHHHHHHHHhhcCCCCcCchhh
Confidence 344577 99999999999999999999999999999887631111 2334458889999999999999999999999
Q ss_pred HHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCcee
Q 008789 253 LYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMD 332 (553)
Q Consensus 253 l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~ 332 (553)
...+.... .....|||++||...|+|.|+........ ...+.++|.|.+.+.+.|..|+..+...+.|++
T Consensus 240 ~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~--------~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d 309 (1093)
T KOG1863|consen 240 TKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV--------ENTLQDLFTGKMKSVIKCIDVDFESSRSESFLD 309 (1093)
T ss_pred hhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh--------hhhhhhhhcCCcceEEEEEeeeeeccccccccC
Confidence 99986554 55679999999999999999987655431 247889999999999999999999999999999
Q ss_pred eeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEee
Q 008789 333 ISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKR 412 (553)
Q Consensus 333 LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkR 412 (553)
+.|++.... +|.++|..|+..|.++|+++ +|..|...+.|.+...+.+||+||.|+|+|
T Consensus 310 ~ql~~~g~~--------------------nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~R 368 (1093)
T KOG1863|consen 310 LQLNGKGVK--------------------NLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMR 368 (1093)
T ss_pred ccccccchh--------------------hHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhh
Confidence 999988754 79999999999999999998 899999999999999999999999999999
Q ss_pred eeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEe--
Q 008789 413 FEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLH-- 490 (553)
Q Consensus 413 f~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr-- 490 (553)
|.++...+...|++..+.||..|+|.+|+.... .......+.|+|.||++|.|...+|||++|++
T Consensus 369 f~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~-------------~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~ 435 (1093)
T KOG1863|consen 369 FEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFK-------------AEESERSAVYSLHAVLVHSGDAHSGHYVAYINPK 435 (1093)
T ss_pred eeeeccCCceeehhhccCCccccccchhccccc-------------hhhhhccceeccchhhcccccccCccceeeecch
Confidence 999987888999999999999999999987410 00111226999999999988899999999999
Q ss_pred cCCcEEEEcCcceEEeccccccC----------C------CceEEEEEEecc
Q 008789 491 LKDQWYKCDDAWITAVEEEVVRA----------S------QCYMLFYAQKML 526 (553)
Q Consensus 491 ~~~~W~~~nD~~V~~v~~~~v~~----------~------~aYlLfY~r~~~ 526 (553)
..++|++|||..|+.++..+++. + .||+|+|.|.+.
T Consensus 436 ~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~ 487 (1093)
T KOG1863|consen 436 LDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSC 487 (1093)
T ss_pred hhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCc
Confidence 57999999999999998766642 1 289999999874
No 34
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=3.8e-35 Score=292.08 Aligned_cols=284 Identities=21% Similarity=0.392 Sum_probs=238.0
Q ss_pred cccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHh-cCCCCccChHHHHHHHHh
Q 008789 180 RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVF-SGDRTPYSPAQLLYSWWQ 258 (553)
Q Consensus 180 ~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~i~p~~~l~~l~~ 258 (553)
.||.|.+++||+||+||+|+++|++|+.++... . |. ...||+|+|.-||..|. .+......+.+|+.++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~---c~----~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E---CP----KEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C---CC----ccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 499999999999999999999999999998765 1 33 37899999999999999 777788899999999977
Q ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCC-----CCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceee
Q 008789 259 HSANLASYEQQDAHEFFISMLDGIHENGVKARSPI-----KDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDI 333 (553)
Q Consensus 259 ~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~-----~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~L 333 (553)
.......+.|+|+++|+++||++|+.+........ .........+.++|+......++|..|+..+.+.+....+
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~ 152 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVL 152 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeee
Confidence 75555667799999999999999998765443311 1112234678999999999999999999999999988888
Q ss_pred eccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeee
Q 008789 334 SLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRF 413 (553)
Q Consensus 334 sL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf 413 (553)
.|..|... ...++.++|+.++..|... ..+|++|++.+....+..|.++|+||.|.++|+
T Consensus 153 ~l~yp~~~-----------------~~~tf~~~Le~sl~~e~~~---~a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~ 212 (295)
T PF13423_consen 153 DLPYPPSN-----------------SNVTFSQVLEHSLNREQQT---RAWCEKCNKYQPTEQRRTIRSLPPVLSINLNRY 212 (295)
T ss_pred eccCCCCC-----------------ccchHHHHHHHHHhhcccc---cccccccccccceeeeeeccCCCcEEEEEccCC
Confidence 88888743 3569999999999988886 489999999999999999999999999999999
Q ss_pred eecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEecC
Q 008789 414 EHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHLK 492 (553)
Q Consensus 414 ~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~~ 492 (553)
... ..+ ..|....+.+|..+++..++..+..... .......+|+|.|+|+|.|+ .++||||||||..
T Consensus 213 ~~~-~~w-~~~~~~~~~ip~~i~~~~~~~~~~~~~~----------~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~ 280 (295)
T PF13423_consen 213 SEE-EFW-PKKNWLKIWIPPSINLPHFIADDSQSDL----------EGESGIFKYELRSMVCHIGDSIESGHLVSLVRVG 280 (295)
T ss_pred Ccc-ccc-ccccCCceecceeeeccccccccccccc----------cCCCCceEEEEEEEEEEecCCCCCCceEEEEEcC
Confidence 887 334 8899999999999999888654321110 13456789999999999999 9999999999975
Q ss_pred ----CcEEEEcCcce
Q 008789 493 ----DQWYKCDDAWI 503 (553)
Q Consensus 493 ----~~W~~~nD~~V 503 (553)
++||.|||..|
T Consensus 281 ~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 281 PSDDSQWYLFNDFLV 295 (295)
T ss_pred CCCCCcEEEECcEeC
Confidence 69999999765
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-35 Score=278.05 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=137.6
Q ss_pred CcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCCCCCCcc
Q 008789 267 EQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTD 346 (553)
Q Consensus 267 ~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~ 346 (553)
+|||+.|||.+|++.+...... ..-++|.|-....-. .+...+.++.|.++.+..
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~-------------~~~~~~~~g~~~~~~------~~~~~e~~l~l~ip~~~~------ 76 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLE-------------PKVDIIHGGKKDQDD------DKLVNERLLQIPVPDDDD------ 76 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhh-------------HHHHHHhcCcccccc------ccccccceEEeecccCCC------
Confidence 7999999999999998753221 223445442211100 022334555554443321
Q ss_pred cccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCcccccccc
Q 008789 347 LANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKID 426 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~ 426 (553)
....+|++||+.|+..|. |.++|++|+||||||.++. +...|++
T Consensus 77 -----------~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~--~~~~Kl~ 120 (241)
T cd02670 77 -----------GGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTE--GKAQKMF 120 (241)
T ss_pred -----------CCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCC--CcceeCC
Confidence 135699999999998886 7899999999999999984 5678999
Q ss_pred cccccCcccCCCccccccccccccCC---c--ccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEecC--------
Q 008789 427 RYMQFPFCLDMNPYLSSSVVRNRFGN---R--MFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHLK-------- 492 (553)
Q Consensus 427 ~~V~fP~~Ldl~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~~-------- 492 (553)
+.|.||..|||.+|+........... . ..............|+|+|||+|.|+ +++|||+||+|..
T Consensus 121 ~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~ 200 (241)
T cd02670 121 KKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETD 200 (241)
T ss_pred cEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccc
Confidence 99999999999999876531100000 0 00001112334578999999999998 8999999999975
Q ss_pred -----CcEEEEcCcceEEeccc------cccCCCceEEEEE
Q 008789 493 -----DQWYKCDDAWITAVEEE------VVRASQCYMLFYA 522 (553)
Q Consensus 493 -----~~W~~~nD~~V~~v~~~------~v~~~~aYlLfY~ 522 (553)
+.||+|||..|+.+... .+...+||||||+
T Consensus 201 ~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 201 NEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred cCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 68999999998876432 5678999999996
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-35 Score=305.99 Aligned_cols=312 Identities=28% Similarity=0.440 Sum_probs=245.4
Q ss_pred CCcccccccCCCcchhH--HHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcC--CCCccChHH
Q 008789 176 PLGLRGLNNLGSTCFMN--SVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSG--DRTPYSPAQ 251 (553)
Q Consensus 176 ~~g~~GL~NlGNtCY~N--svLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~~~i~p~~ 251 (553)
+-..-|..|.+++|+.| +|.|.+.....++...+......... ......+...+..++...-.. ....+.|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~ 305 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRS---YIIKEELLTCLLDLFSSISSRKKLVGRISPTR 305 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccch---hhhhHHHHHHhhhhccchhhhcccccccCcch
Confidence 34577999999999999 99999999988885443322111000 001112222333333332221 134579999
Q ss_pred HHHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCC------C------CCCCC------------CCccccceeee
Q 008789 252 LLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKAR------S------PIKDT------------GECHCVAHRVF 307 (553)
Q Consensus 252 ~l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~------~------~~~~~------------~~~~~~i~~~F 307 (553)
|+..+++....|..+.|||||||+.++++.+.+...... . ..... .....+++.+|
T Consensus 306 ~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf 385 (587)
T KOG1864|consen 306 FISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLF 385 (587)
T ss_pred hhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhh
Confidence 999999999999999999999999999999986422111 0 00000 11346789999
Q ss_pred eEEEeeEEEeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCccccccc
Q 008789 308 SGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENC 387 (553)
Q Consensus 308 ~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C 387 (553)
.|++..+..|.+|+..+...+.|.+++++++... ..++..+|+.|...|.+.|+++|+|++|
T Consensus 386 ~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de------------------~~si~~~l~~~~~~e~l~g~nky~c~~c 447 (587)
T KOG1864|consen 386 QGILTNETRCLSCETITSRDEGFLDLSVAVEIDE------------------NTSITNLLKSFSSTETLSGENKYSCENC 447 (587)
T ss_pred cCeeeeeeeeccccccccccccccccceeccccc------------------cccHHHHHHHhcchhhccCCCccccccc
Confidence 9999999999999999999999999999998532 3499999999999999999999999999
Q ss_pred ccccceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCce
Q 008789 388 QERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTE 467 (553)
Q Consensus 388 ~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (553)
...+.|.+++.++++|.+|+||||||.+........|+...|.||.+|.+...+... .....+
T Consensus 448 ~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~-----------------~~~~~~ 510 (587)
T KOG1864|consen 448 CSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDD-----------------NNPDRK 510 (587)
T ss_pred CchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccc-----------------cCccce
Confidence 999999999999999999999999999986566678999999999999887554332 112468
Q ss_pred EEEEEEEEeecc-CCCCCeEEEEecCCc-EEEEcCcceEEeccccccC---CCceEEEEEEec
Q 008789 468 FEIFAVVTHSGT-LDSGHYVTYLHLKDQ-WYKCDDAWITAVEEEVVRA---SQCYMLFYAQKM 525 (553)
Q Consensus 468 Y~L~avV~H~G~-~~~GHY~a~vr~~~~-W~~~nD~~V~~v~~~~v~~---~~aYlLfY~r~~ 525 (553)
|+|+|||+|.|. ++.|||+||+|..+. |+.|||+.|+.++.+.|.. ..+|+++|....
T Consensus 511 Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 511 YDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred eeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeEEe
Confidence 999999999999 999999999999876 9999999999999998865 578888887754
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.2e-31 Score=250.61 Aligned_cols=311 Identities=27% Similarity=0.406 Sum_probs=224.4
Q ss_pred CcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcC--------------
Q 008789 177 LGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSG-------------- 242 (553)
Q Consensus 177 ~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-------------- 242 (553)
.-.+|+.|-||-|||||+||+|+.+++|.+.+-.......... .....++.++..+.....+.
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~---~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~ 102 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVK---EGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVP 102 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCcee---cccchhHHHHHHHHhhccccchhhhhhhccCCcc
Confidence 4468999999999999999999999999998754331111111 11223444443333332211
Q ss_pred --------------CCCccChHHHHHHHHhccC--CCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCC-------------
Q 008789 243 --------------DRTPYSPAQLLYSWWQHSA--NLASYEQQDAHEFFISMLDGIHENGVKARSPI------------- 293 (553)
Q Consensus 243 --------------~~~~i~p~~~l~~l~~~~~--~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~------------- 293 (553)
+...+-|..+...++.... ....|.|.||.||+.++||.||++........
T Consensus 103 ~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i 182 (420)
T KOG1871|consen 103 EHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLI 182 (420)
T ss_pred ccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccc
Confidence 0112334444444443322 34458999999999999999998732110000
Q ss_pred C----------------------------------CCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCC
Q 008789 294 K----------------------------------DTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDT 339 (553)
Q Consensus 294 ~----------------------------------~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~ 339 (553)
. ..+-..+.++++|+|++++.+.-.. .+.+.+.+||..|.|+|..
T Consensus 183 ~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~ 261 (420)
T KOG1871|consen 183 NNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQS 261 (420)
T ss_pred cccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeec
Confidence 0 1122357889999999999887544 4667899999999999976
Q ss_pred CCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCc
Q 008789 340 GNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVR 419 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~ 419 (553)
.. ..+++++|..+...|.+. .+-.+-+....+.++..+.+||++|++|++||.+.. .
T Consensus 262 ~~------------------i~sv~~ales~~~re~lp----~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~-t 318 (420)
T KOG1871|consen 262 EK------------------IHSVQDALESLVARESLP----GYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEK-T 318 (420)
T ss_pred cc------------------cCCHHHHhhccChhhccc----ceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHh-c
Confidence 43 458999999999999987 333446677888999999999999999999999874 5
Q ss_pred ccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEec--CCcEE
Q 008789 420 RMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHL--KDQWY 496 (553)
Q Consensus 420 ~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~--~~~W~ 496 (553)
+...|+.+.+++|-.|.+..-+-..-.+.+. ......|+|.+||.|.|+ +..|||+.-+.+ .+.|+
T Consensus 319 gg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~-----------~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~ 387 (420)
T KOG1871|consen 319 GGARKLGKKIEYPWTLKISKNCFSQGLKIRI-----------LIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQ 387 (420)
T ss_pred cchhhhchhhhccceeeechhhhccccchhh-----------hccccccceEEEEEecccccccCceEEeeeecccCcee
Confidence 6788999999999888876544322122111 223457999999999999 999999999865 57999
Q ss_pred EEcCcceEEeccccccC----CCceEEEEEEec
Q 008789 497 KCDDAWITAVEEEVVRA----SQCYMLFYAQKM 525 (553)
Q Consensus 497 ~~nD~~V~~v~~~~v~~----~~aYlLfY~r~~ 525 (553)
.+||..|..+..++|.. ..||+|+|+|.+
T Consensus 388 rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 388 RIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred EeccceeeeccHhhhccccCccchheeEeeecC
Confidence 99999999999999976 579999999864
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-30 Score=256.07 Aligned_cols=316 Identities=21% Similarity=0.262 Sum_probs=224.1
Q ss_pred cccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHhc
Q 008789 180 RGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQH 259 (553)
Q Consensus 180 ~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~~ 259 (553)
+||.|+|||||||+.+|+|...|+++..+............ ......+..+++.+|..+.+. .++.|..+++.+.+.
T Consensus 106 ~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t-~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~ 182 (473)
T KOG1872|consen 106 VGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDT-WERRRRISIETRTCFRPLCEK--GAVAPINLLQTLSSQ 182 (473)
T ss_pred ccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCch-hhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHH
Confidence 49999999999999999999999998877554322111111 011345778889999999887 789999999999888
Q ss_pred cCCCCC------CCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCcccc--ccCce
Q 008789 260 SANLAS------YEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTT--YDPFM 331 (553)
Q Consensus 260 ~~~f~~------~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~--~e~f~ 331 (553)
.|+|.- +.||||.|.+..++..+++......... .....+...|++.+..+..|.+-...... .|.|.
T Consensus 183 ~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~----~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~ 258 (473)
T KOG1872|consen 183 YPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP----CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVD 258 (473)
T ss_pred hHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc----chhHHHHHhhccccccceeeccCccccccccccccc
Confidence 887765 8999999999999999987654332111 22246778899999999999887665544 45565
Q ss_pred eeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEe
Q 008789 332 DISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIK 411 (553)
Q Consensus 332 ~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~Lk 411 (553)
.|..-+-... ..+...|+.=+..+.. -.-+.-|....-.|...|.+||+||+|+..
T Consensus 259 ~L~c~i~~~~-------------------~~~k~Gl~~~~~e~~~-----K~s~~lgr~a~y~k~~~isrlP~ylTvq~v 314 (473)
T KOG1872|consen 259 QLKCIINKTV-------------------HDMRFGLKSGLSEEIQ-----KISSILGRPAAYQKVMYISRLPEYLTVQEV 314 (473)
T ss_pred ccceEEeeee-------------------chhhhhhhhhhhhhhh-----ccCcccCCChHHHHHhHhhcCcccceEEEE
Confidence 5554443311 1222222222211111 011112233334677889999999999999
Q ss_pred eeeecCCcccccccccccccCcccCCCcccccccccccc--------------CCcc-c------------cc-----CC
Q 008789 412 RFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRF--------------GNRM-F------------AF-----EG 459 (553)
Q Consensus 412 Rf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~--------------~~~~-~------------~~-----~~ 459 (553)
||.+....+...|+-+.|.||..||.-++++++..+... +.+. . +. ..
T Consensus 315 rf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~ 394 (473)
T KOG1872|consen 315 RFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKS 394 (473)
T ss_pred EEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccc
Confidence 999987777788999999999999999999877522211 0000 0 00 00
Q ss_pred CCCCC-CceEEEEEEEEeecc-CCCCCeEEEEec-CCcEEEEcCcceEEeccccccC-------CCceEEEEEEecc
Q 008789 460 DELDT-STEFEIFAVVTHSGT-LDSGHYVTYLHL-KDQWYKCDDAWITAVEEEVVRA-------SQCYMLFYAQKML 526 (553)
Q Consensus 460 ~~~~~-~~~Y~L~avV~H~G~-~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~-------~~aYlLfY~r~~~ 526 (553)
..... ...|+|.|||.|.|. ..+|||++++|. .+.|++|||..|+-+..+.+.. ..||+|+|.-+.+
T Consensus 395 ~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~~l 471 (473)
T KOG1872|consen 395 GGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKARVL 471 (473)
T ss_pred cccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccccc
Confidence 11112 668999999999998 999999999987 5799999999999999888864 5799999987654
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.82 E-value=7e-20 Score=191.32 Aligned_cols=320 Identities=19% Similarity=0.284 Sum_probs=215.0
Q ss_pred ccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHHHh
Q 008789 179 LRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSWWQ 258 (553)
Q Consensus 179 ~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l~~ 258 (553)
+.||.--+-+-|.|++||+|..+|++|..++.. .|.. ..|++|+|.-||..|.+....+....+|+.++..
T Consensus 499 yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-----~C~~----e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t 569 (1118)
T KOG1275|consen 499 YAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-----ICTK----EFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRT 569 (1118)
T ss_pred eeccCCCCchHHHHHHHHHHHhccHHHHHHHcC-----ccch----hHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhh
Confidence 678888888899999999999999999999876 2333 7899999999999999888788999999998865
Q ss_pred ccCCCCCC-----C-----------cCCHHHHHHHHHHHHHhcCC--C--CCCCCCCC---CCccccceeeeeEEEeeEE
Q 008789 259 HSANLASY-----E-----------QQDAHEFFISMLDGIHENGV--K--ARSPIKDT---GECHCVAHRVFSGQLRSDV 315 (553)
Q Consensus 259 ~~~~f~~~-----~-----------QqDA~Efl~~lL~~L~~~~~--~--~~~~~~~~---~~~~~~i~~~F~g~l~~~i 315 (553)
....-+.+ . -|||..|.........+-.. . ........ -.....+.+.|.-.++...
T Consensus 570 ~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~ 649 (1118)
T KOG1275|consen 570 NPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSL 649 (1118)
T ss_pred ChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhh
Confidence 43211110 1 12333332211111100000 0 00000000 1112477899999999999
Q ss_pred EeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeE
Q 008789 316 TCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVK 395 (553)
Q Consensus 316 ~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k 395 (553)
.|..|+..+.+......+.|..|...... ..+ ....+...|++-...+.-. ..+|+.|++.+....
T Consensus 650 ~Cg~C~~~~~~~k~l~~~~lsyp~~~~id-~~~----------~~~~F~~iL~R~l~l~kn~---~~~C~~C~k~ep~~q 715 (1118)
T KOG1275|consen 650 RCGECGDEKQKSKSLLRKVLSYPNVLLID-TLA----------KSNNFVEILKRSLSLFKNK---QAWCETCTKPEPTSQ 715 (1118)
T ss_pred hcccccchhhhhhhhhheeecCCCccchh-hcc----------cccchHHHhhhhhhccccc---ccccccccCCCCccc
Confidence 99999999887777777788877644100 011 1224455554443322211 268999999999999
Q ss_pred EEEeecCCceEEEEEeeeeecCCccccc--ccccccccCcccCCCccccccccccccC-CcccccCCCCCCCCceEEEEE
Q 008789 396 QMSIKRLPLVLCLHIKRFEHFPVRRMSR--KIDRYMQFPFCLDMNPYLSSSVVRNRFG-NRMFAFEGDELDTSTEFEIFA 472 (553)
Q Consensus 396 ~~~i~~lP~vL~i~LkRf~~~~~~~~~~--Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Y~L~a 472 (553)
+..+..+|.+|.|...-+.....++..+ |.-..|.+|+.+-|..--.......... ....+..+.+......|+|.|
T Consensus 716 ~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a 795 (1118)
T KOG1275|consen 716 KKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDA 795 (1118)
T ss_pred ccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeee
Confidence 9999999999999998877654343333 4567788998777754322221111111 111111222344568999999
Q ss_pred EEEeecc-CCCCCeEEEEec----------CCcEEEEcCcceEEeccccccC-----CCceEEEE
Q 008789 473 VVTHSGT-LDSGHYVTYLHL----------KDQWYKCDDAWITAVEEEVVRA-----SQCYMLFY 521 (553)
Q Consensus 473 vV~H~G~-~~~GHY~a~vr~----------~~~W~~~nD~~V~~v~~~~v~~-----~~aYlLfY 521 (553)
+|+|.|+ .+.+|++++|+. +.+||.|||..|.++++++++. ..+-||+|
T Consensus 796 ~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 796 MVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred EEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 9999999 799999999974 3599999999999999999875 57899999
No 40
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.71 E-value=7.4e-18 Score=125.21 Aligned_cols=59 Identities=39% Similarity=0.972 Sum_probs=50.0
Q ss_pred CCccCCCCCCeEEecccCCcccc----hhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeCCC
Q 008789 56 CCFCNGYQKRLYLCLICSSISCS----SHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPD 115 (553)
Q Consensus 56 c~~C~~~~~~~~~Cl~Cg~~~c~----~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~~ 115 (553)
|+.|.....++|+||+||++||+ +||+.|++ +++|+|+|++.++.||||+|+++|+|++
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~-~~~H~l~v~~~~~~i~C~~C~~~v~~~~ 63 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYK-ETGHPLAVSLSTGSIWCYACDDYVYDPE 63 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHH-HHT--EEEETTTTCEEETTTTEEEESTT
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhc-ccCCeEEEECCCCeEEEcCCCcEEeCCC
Confidence 67786435899999999999999 59999999 7999999999999999999999999864
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.10 E-value=4.3e-11 Score=117.49 Aligned_cols=57 Identities=28% Similarity=0.618 Sum_probs=53.0
Q ss_pred CCCCccCCCCCCeEEecccCCcccc----hhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEe
Q 008789 54 PRCCFCNGYQKRLYLCLICSSISCS----SHTLLHSQCENGHDIAVDIERSELYCVLCCDQVY 112 (553)
Q Consensus 54 ~~c~~C~~~~~~~~~Cl~Cg~~~c~----~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~ 112 (553)
..|..|+. ..+||+||.||++||| +||.+||+ +|+|+++++|+|.+||-|+-|.||.
T Consensus 229 ~~c~~c~~-~~~LwicliCg~vgcgrY~eghA~rHwe-et~H~yalel~tqrVWDYAGDnYVh 289 (493)
T KOG0804|consen 229 SLCLACGC-TEDLWICLICGNVGCGRYKEGHARRHWE-ETGHCYALELETQRVWDYAGDNYVH 289 (493)
T ss_pred hhhhhhcc-cccEEEEEEccceecccccchhHHHHHH-hhcceEEEeecceeeeecccchhhh
Confidence 46889974 6899999999999999 99999999 7999999999999999999999984
No 42
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=98.93 E-value=9.2e-10 Score=77.90 Aligned_cols=45 Identities=36% Similarity=0.885 Sum_probs=39.8
Q ss_pred CCCccCCCCCCeEEecccCCcccc----hhHHhhhcCCCCCeEEEECCCCc
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCS----SHTLLHSQCENGHDIAVDIERSE 101 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~----~h~~~H~~~~~~H~~~~~~~~~~ 101 (553)
+|..|.. ..++|+||.|++++|+ +|+..|+. +++|+|++++.++.
T Consensus 1 ~C~~C~~-~~~l~~CL~C~~~~c~~~~~~h~~~H~~-~t~H~~~~~~~~~~ 49 (50)
T smart00290 1 RCSVCGT-IENLWLCLTCGQVGCGRYQLGHALEHFE-ETGHPLVVKLGTQR 49 (50)
T ss_pred CcccCCC-cCCeEEecCCCCcccCCCCCcHHHHHhh-hhCCCEEEEccccc
Confidence 4889975 4579999999999996 89999998 79999999998875
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.44 E-value=7.1e-06 Score=76.01 Aligned_cols=146 Identities=18% Similarity=0.362 Sum_probs=91.0
Q ss_pred ccceeeeeEEEeeEEEeCCCCCcccc-----ccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcc
Q 008789 301 CVAHRVFSGQLRSDVTCMSCGYTSTT-----YDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEK 375 (553)
Q Consensus 301 ~~i~~~F~g~l~~~i~C~~C~~~s~~-----~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~ 375 (553)
..+.++|.-...=...|..||+.... ...|..+. |+-- .
T Consensus 121 ~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~---pdwh--------------------P------------- 164 (275)
T PF15499_consen 121 PWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVI---PDWH--------------------P------------- 164 (275)
T ss_pred hHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCC---CCCC--------------------c-------------
Confidence 35678899888888999999986422 22232221 1110 0
Q ss_pred cCCCCcccccccccccceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCcccCCCccccccccccccCCccc
Q 008789 376 LGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMF 455 (553)
Q Consensus 376 l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~ 455 (553)
+....-..|.+|+.+.. .+++.+.++|+++.+|+.- + .|.. |+..|-.
T Consensus 165 LnA~h~~pCn~C~~ksQ-~rkMvlekv~~vfmLHFVe-------G----------LP~n-dl~~ysF------------- 212 (275)
T PF15499_consen 165 LNAVHFGPCNSCNSKSQ-RRKMVLEKVPPVFMLHFVE-------G----------LPHN-DLQHYSF------------- 212 (275)
T ss_pred ccccccCCCcccCChHH-hHhhhhhcCchhhhhhhhc-------c----------CCcc-CCCccce-------------
Confidence 11111256999998753 5666789999999999742 1 2221 2332221
Q ss_pred ccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec-CCcEEEEcCcceEEec---cccccCCCceEEEEE
Q 008789 456 AFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL-KDQWYKCDDAWITAVE---EEVVRASQCYMLFYA 522 (553)
Q Consensus 456 ~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~---~~~v~~~~aYlLfY~ 522 (553)
.-.+..|++.+||-+.-. --|+++++++ +|.|.+|||.+=-... .-+|-.++--|+||+
T Consensus 213 ------~feg~~Y~Vt~VIQY~~~--~~HFvtWi~~~dGsWLecDDLkgp~~~~h~~~~vPasEiHIV~WE 275 (275)
T PF15499_consen 213 ------HFEGCLYQVTSVIQYQAN--LNHFVTWIRDSDGSWLECDDLKGPCCWRHKRFEVPASEIHIVIWE 275 (275)
T ss_pred ------eecCeeEEEEEEEEEecc--CceeEEEEEcCCCCeEeeccCCCcchhccCCCCCChhHcEEEEeC
Confidence 124568999999998654 4599999986 7899999998743221 223334555566653
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00033 Score=75.08 Aligned_cols=106 Identities=25% Similarity=0.336 Sum_probs=58.9
Q ss_pred cccCCCcchhHHHHHHHhcCHhHHHHHHcCC----CCccccccCCCCccchHHHHHH--HHHHHhcCC-----CCccChH
Q 008789 182 LNNLGSTCFMNSVLQALLHAPPFRNYFLTGQ----RNHEVCRKRSSDRLCLLCDIYV--FFSAVFSGD-----RTPYSPA 250 (553)
Q Consensus 182 L~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~----~~~~~~~~~~~~~~~l~~~l~~--l~~~l~~~~-----~~~i~p~ 250 (553)
|.|.||+||.||+||+|..+|+|+-.+.... .................+.... ......... ....+-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999997664321 1111111000001111111111 111111111 1122333
Q ss_pred HHHHHHH---hccCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q 008789 251 QLLYSWW---QHSANLASYEQQDAHEFFISMLDGIHENGV 287 (553)
Q Consensus 251 ~~l~~l~---~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~ 287 (553)
.+.+... +...+|....|+||++|+.-++-.+....+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 4444432 334568889999999999998887775543
No 45
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=96.93 E-value=0.011 Score=58.43 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=47.1
Q ss_pred CcccccccCCCcchhHHHHHHHhcCHh-HHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHH
Q 008789 177 LGLRGLNNLGSTCFMNSVLQALLHAPP-FRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYS 255 (553)
Q Consensus 177 ~g~~GL~NlGNtCY~NsvLQ~L~~~p~-f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 255 (553)
.|++=|.=.-|+||+||++-+|-+... |+. -.+..++.++..| +|..|...
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-----------------------~~l~~aw~~f~~G-----~~~~fVa~ 151 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKS-----------------------PGLDEAWNEFKAG-----DPAPFVAW 151 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BSS-----------------------HHHHHHHHHHHTT-------HHHHHH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccCC-----------------------HHHHHHHHHHhCC-----ChHHHHHH
Confidence 466677777899999999977755421 111 1356667777777 56777776
Q ss_pred HHhccCCCCCCCcCCHHHHHHHHHHHHHh
Q 008789 256 WWQHSANLASYEQQDAHEFFISMLDGIHE 284 (553)
Q Consensus 256 l~~~~~~f~~~~QqDA~Efl~~lL~~L~~ 284 (553)
+-.. .....|+-.||+++|..||+.+..
T Consensus 152 ~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 152 CYAS-TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence 6443 356678999999999999877653
No 46
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=96.51 E-value=0.0021 Score=65.30 Aligned_cols=28 Identities=14% Similarity=0.469 Sum_probs=21.0
Q ss_pred ccccccCCCcchhHHHHHHHhcCHhHHH
Q 008789 179 LRGLNNLGSTCFMNSVLQALLHAPPFRN 206 (553)
Q Consensus 179 ~~GL~NlGNtCY~NsvLQ~L~~~p~f~~ 206 (553)
+.|++-.-|.||+||.|-+++.-....+
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~sv~d 395 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDSVTD 395 (724)
T ss_pred cccccCCcchhhcccccccccccccccc
Confidence 5577777889999999988876554444
No 47
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=93.44 E-value=0.039 Score=48.93 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCCCCeEEEEecCCcEEEEcCcceEEeccccccCCCceEEEEEEecc
Q 008789 480 LDSGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKML 526 (553)
Q Consensus 480 ~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~~ 526 (553)
-..||.+.+.+..+.||.+||+.+.+.++... -+|.|..-+.
T Consensus 136 ~g~~Havfa~~ts~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D~ 177 (193)
T PF05408_consen 136 KGQEHAVFACVTSDGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQ 177 (193)
T ss_dssp ESTTEEEEEEEETTCEEEEETTEEEE----GG-----GEEEEEESSS
T ss_pred cCCcceEEEEEeeCcEEEecCCeeeeCCCChh-----heEEEcccCc
Confidence 35699999999999999999999998765432 2355655444
No 48
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.019 Score=62.24 Aligned_cols=213 Identities=14% Similarity=0.229 Sum_probs=119.7
Q ss_pred CcCCHHHHHHHHHHHHHhcCCCCCCCCC------------CCCCccccceeeeeEEEeeEEEeCCCCCcccccc-C--ce
Q 008789 267 EQQDAHEFFISMLDGIHENGVKARSPIK------------DTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYD-P--FM 331 (553)
Q Consensus 267 ~QqDA~Efl~~lL~~L~~~~~~~~~~~~------------~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e-~--f~ 331 (553)
...++.++|..++..|++.......... ......++++++|+.....+..|..|+....--+ . +.
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~ 627 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGI 627 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhh
Confidence 4457888888888888765432211100 1112235778899999999999999986543221 1 11
Q ss_pred eeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCccccc----ccccccceeEEEEeecCCceEE
Q 008789 332 DISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCE----NCQERQDSVKQMSIKRLPLVLC 407 (553)
Q Consensus 332 ~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~----~C~~~~~a~k~~~i~~lP~vL~ 407 (553)
.+.++.-.. +.......+.++.|+. ...+.. ..|+ .||+.. .....|.+.|+|.+
T Consensus 628 ~~~a~slr~-------------~k~a~~n~~f~~ilk~-i~m~~~-----m~cD~~~gGCgk~n--~v~h~is~~P~vft 686 (806)
T KOG1887|consen 628 VIAADSLRQ-------------LKCAFQNITFEDILKN-IRMNDK-----MLCDKETGGCGKAN--LVHHILSPCPPVFT 686 (806)
T ss_pred hccchhhhh-------------HHHHhhhhhHHHHHHH-hhhhhh-----hcccccCCCCcchh--hhhhhcCCCCCeeE
Confidence 111111000 0011122456666655 333322 3443 366543 33345778999999
Q ss_pred EEEeeeeecCCccccccc--ccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCe
Q 008789 408 LHIKRFEHFPVRRMSRKI--DRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHY 485 (553)
Q Consensus 408 i~LkRf~~~~~~~~~~Ki--~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY 485 (553)
|.+.. +.. ...|. .+...+..++|++..... ......+|+|+++|.-... .++|
T Consensus 687 Ivlew-Ek~----ETe~eI~~T~~aL~teidis~~y~~-----------------g~ep~t~yrLVSmv~~~e~--~~~~ 742 (806)
T KOG1887|consen 687 IVLEW-EKS----ETEKEISETTKALATEIDISRLYRE-----------------GLEPNTKYRLVSMVGNHEE--GEEY 742 (806)
T ss_pred eeeeh-hcc----cchHHHHHHHHHHHhhhhHHHHhhh-----------------ccCcCceeEEEEEeeeccc--cceE
Confidence 96653 111 11111 122334456666543321 3345678999999986533 6799
Q ss_pred EEEEecCCcEE--EEcCcceEEe-ccccccC------CCceEEEEEEe
Q 008789 486 VTYLHLKDQWY--KCDDAWITAV-EEEVVRA------SQCYMLFYAQK 524 (553)
Q Consensus 486 ~a~vr~~~~W~--~~nD~~V~~v-~~~~v~~------~~aYlLfY~r~ 524 (553)
.|+....+.|+ ..+|..+..+ ++.+|.. -.+=+|||+..
T Consensus 743 ~C~Aye~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 743 ICFAYEPNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEAQ 790 (806)
T ss_pred EEeeccCCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHHH
Confidence 99999999999 8888877666 2334421 24666777663
No 49
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=88.77 E-value=0.34 Score=42.13 Aligned_cols=55 Identities=22% Similarity=0.508 Sum_probs=31.5
Q ss_pred CCCccCC-CCCCeEEecccCCcccc-------hhHHhhhcCCCCCe-EEEEC----CCCcEEEcCCCCE
Q 008789 55 RCCFCNG-YQKRLYLCLICSSISCS-------SHTLLHSQCENGHD-IAVDI----ERSELYCVLCCDQ 110 (553)
Q Consensus 55 ~c~~C~~-~~~~~~~Cl~Cg~~~c~-------~h~~~H~~~~~~H~-~~~~~----~~~~~~c~~c~~~ 110 (553)
.|.-|+. ....+-.|++|++-||. +|...|.. .++|. |.+.- +.-.+.||.|+..
T Consensus 2 aC~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv-~srh~ev~LH~~s~lgdt~leCy~Cg~~ 69 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLV-RSRHKEVSLHPDSPLGDTVLECYNCGSR 69 (152)
T ss_dssp S-TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHH-HHT---EEE-TTSTT-S-B---TTT---
T ss_pred CccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHH-HccCCceeeCCCCCCCCcEEEEEecCCC
Confidence 4888852 45789999999999994 89999987 45663 55544 3456889999853
No 50
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=87.39 E-value=0.72 Score=41.10 Aligned_cols=31 Identities=32% Similarity=0.631 Sum_probs=20.2
Q ss_pred cccccccCCCcchhHHHHHHHhcC--HhHHHHH
Q 008789 178 GLRGLNNLGSTCFMNSVLQALLHA--PPFRNYF 208 (553)
Q Consensus 178 g~~GL~NlGNtCY~NsvLQ~L~~~--p~f~~~l 208 (553)
.++|+.|.+||||+||++|.+... |-|..++
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y 64 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYY 64 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHHHT-GTTHHHH
T ss_pred EEecCCCCCCChHHHHHHHHHHHcCcccchhhc
Confidence 466999999999999999998654 4444444
No 51
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=80.50 E-value=1.3 Score=47.35 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=39.6
Q ss_pred CCCCCCccC---CCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCC
Q 008789 52 EIPRCCFCN---GYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERS 100 (553)
Q Consensus 52 ~~~~c~~C~---~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~ 100 (553)
-.+.|..|- -....||+||.|-.-+++.|...|+. .|+|.+|+.+...
T Consensus 23 ~kdeC~ycf~sp~~e~glyicl~~f~afg~~~v~~~f~-~tg~~~yl~i~r~ 73 (763)
T KOG0944|consen 23 YKDECAYCFDSPESEGGLYICLNCFLAFGREHVEEYFR-KTGHSVYLHIARV 73 (763)
T ss_pred ehhhceeeccCCCCCCCEEeehhhhhhhhhHHHHHHHh-hcCceEEEEeccc
Confidence 345688882 23568999999999999999999998 7999999999543
No 52
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=66.17 E-value=5.8 Score=28.79 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=29.9
Q ss_pred CcccccccccccceeEEEEee--cCCceEEEEEeeeeec
Q 008789 380 QKFFCENCQERQDSVKQMSIK--RLPLVLCLHIKRFEHF 416 (553)
Q Consensus 380 ~~~~C~~C~~~~~a~k~~~i~--~lP~vL~i~LkRf~~~ 416 (553)
+.+.|++|+...-..|+.... .+.+++=||.++|..-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~i 41 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIVI 41 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEEE
Confidence 346699999988777877764 7889999999999753
No 53
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=65.71 E-value=1.6 Score=45.19 Aligned_cols=43 Identities=30% Similarity=0.704 Sum_probs=30.2
Q ss_pred CCCccC-CC--CCCeEEecccCCcccchhHHhhhcC----CCCCeEEEEC
Q 008789 55 RCCFCN-GY--QKRLYLCLICSSISCSSHTLLHSQC----ENGHDIAVDI 97 (553)
Q Consensus 55 ~c~~C~-~~--~~~~~~Cl~Cg~~~c~~h~~~H~~~----~~~H~~~~~~ 97 (553)
.|..|- .. ...+-+||.|+..+|+.|...|... .+-|++++.+
T Consensus 24 eC~yCf~S~~~e~si~vClnCfqs~C~~h~~~H~~~~~~c~tvh~i~~ti 73 (749)
T COG5207 24 ECCYCFRSIGDEHSISVCLNCFQSFCEKHRGIHLGTKSGCRTVHDIKETI 73 (749)
T ss_pred hhheeeccCCCCcceehHHHHhHhhhhhccceeecchhhhhhhhhhhhhh
Confidence 588882 11 2348999999999999777766531 4667777655
No 54
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=63.24 E-value=8 Score=20.72 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=12.0
Q ss_pred EEEecCCcEEEEcCc
Q 008789 487 TYLHLKDQWYKCDDA 501 (553)
Q Consensus 487 a~vr~~~~W~~~nD~ 501 (553)
.+++.++.||.|+++
T Consensus 2 ~W~~~~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQDNGNWYYFDSD 16 (19)
T ss_dssp EEEEETTEEEEETTT
T ss_pred cCEEECCEEEEeCCC
Confidence 357778999999875
No 55
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=61.01 E-value=5.4 Score=26.17 Aligned_cols=27 Identities=30% Similarity=0.758 Sum_probs=18.3
Q ss_pred CCccCCCCCC-eEEecccCCcccchhHH
Q 008789 56 CCFCNGYQKR-LYLCLICSSISCSSHTL 82 (553)
Q Consensus 56 c~~C~~~~~~-~~~Cl~Cg~~~c~~h~~ 82 (553)
|..|.....- ...|-.|+.++|..|.+
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~HR~ 28 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGEHRL 28 (39)
T ss_pred CcccCCcccccCeECCccCCccccccCC
Confidence 5567432222 57899999999986654
No 56
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=54.66 E-value=6.5 Score=24.88 Aligned_cols=13 Identities=23% Similarity=0.800 Sum_probs=10.6
Q ss_pred eEEecccCCcccc
Q 008789 66 LYLCLICSSISCS 78 (553)
Q Consensus 66 ~~~Cl~Cg~~~c~ 78 (553)
.|+|..||++.=+
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 6999999988654
No 57
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=53.77 E-value=8.5 Score=24.98 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=23.1
Q ss_pred CCccCCCCCCeEEecccCCcccchhHHhhhc
Q 008789 56 CCFCNGYQKRLYLCLICSSISCSSHTLLHSQ 86 (553)
Q Consensus 56 c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~ 86 (553)
|..|.....+.++-+.|||.+|..-+.++.+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~ 31 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLE 31 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHH
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHH
Confidence 4567545677889999999999977776654
No 58
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=52.80 E-value=5.8 Score=28.44 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=17.9
Q ss_pred CCCCCccCCCCCCeEEecccCCcc
Q 008789 53 IPRCCFCNGYQKRLYLCLICSSIS 76 (553)
Q Consensus 53 ~~~c~~C~~~~~~~~~Cl~Cg~~~ 76 (553)
..+|..|.. ..+.|.|-.||+.|
T Consensus 36 I~RC~~CRk-~~~~Y~CP~CGF~G 58 (59)
T PRK14890 36 IYRCEKCRK-QSNPYTCPKCGFEG 58 (59)
T ss_pred EeechhHHh-cCCceECCCCCCcC
Confidence 446888863 67899999999875
No 59
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=50.48 E-value=6.3 Score=28.21 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=19.2
Q ss_pred CCCCCCCccCCCCCCeEEecccCCcc
Q 008789 51 TEIPRCCFCNGYQKRLYLCLICSSIS 76 (553)
Q Consensus 51 ~~~~~c~~C~~~~~~~~~Cl~Cg~~~ 76 (553)
....+|..|.. ..+.|.|-.||+.|
T Consensus 36 ~~I~Rc~~CRk-~g~~Y~Cp~CGF~G 60 (61)
T COG2888 36 VEIYRCAKCRK-LGNPYRCPKCGFEG 60 (61)
T ss_pred eeeehhhhHHH-cCCceECCCcCccC
Confidence 34457888863 67899999999875
No 60
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=48.44 E-value=22 Score=31.58 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=25.4
Q ss_pred EEEEEEeeccCCCCCeEEEEecCCcEEEEcCcceEE
Q 008789 470 IFAVVTHSGTLDSGHYVTYLHLKDQWYKCDDAWITA 505 (553)
Q Consensus 470 L~avV~H~G~~~~GHY~a~vr~~~~W~~~nD~~V~~ 505 (553)
..|+|++.+ .||++..|-++.||-+|=..-.+
T Consensus 99 ~~gfI~N~~----~HWf~iRki~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICNLS----RHWFAIRKIGGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEECT----TEEEEEEEETTEEEEECTTTSS-
T ss_pred ceEEEeccC----cceEEEEeeCCeeEeccCCCCCC
Confidence 468899844 49999999999999998765443
No 61
>PHA00616 hypothetical protein
Probab=47.86 E-value=5.5 Score=26.85 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=13.8
Q ss_pred EEecccCCcccc-hhHHhhh
Q 008789 67 YLCLICSSISCS-SHTLLHS 85 (553)
Q Consensus 67 ~~Cl~Cg~~~c~-~h~~~H~ 85 (553)
+.|+.||..+.. ++...|.
T Consensus 2 YqC~~CG~~F~~~s~l~~H~ 21 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHL 21 (44)
T ss_pred CccchhhHHHhhHHHHHHHH
Confidence 679999999997 4444443
No 62
>PF14353 CpXC: CpXC protein
Probab=46.65 E-value=23 Score=30.16 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 008789 381 KFFCENCQERQD 392 (553)
Q Consensus 381 ~~~C~~C~~~~~ 392 (553)
.+.|++||....
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 489999998753
No 63
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=44.28 E-value=19 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.352 Sum_probs=19.8
Q ss_pred CCCCCCCccCCCCCCeEEecccCCcc
Q 008789 51 TEIPRCCFCNGYQKRLYLCLICSSIS 76 (553)
Q Consensus 51 ~~~~~c~~C~~~~~~~~~Cl~Cg~~~ 76 (553)
.....|..|+.....-.+|..||++.
T Consensus 25 ~~l~~C~~CG~~~~~H~vC~~CG~Y~ 50 (57)
T PRK12286 25 PGLVECPNCGEPKLPHRVCPSCGYYK 50 (57)
T ss_pred CcceECCCCCCccCCeEECCCCCcCC
Confidence 34457999976667789999999753
No 64
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=43.63 E-value=22 Score=38.70 Aligned_cols=59 Identities=20% Similarity=0.454 Sum_probs=41.8
Q ss_pred CCCCCCCccCCCC-CCeEEecccCCcccc-------hhHHhhhcCCCCCe-EEEEC----CCCcEEEcCCCCE
Q 008789 51 TEIPRCCFCNGYQ-KRLYLCLICSSISCS-------SHTLLHSQCENGHD-IAVDI----ERSELYCVLCCDQ 110 (553)
Q Consensus 51 ~~~~~c~~C~~~~-~~~~~Cl~Cg~~~c~-------~h~~~H~~~~~~H~-~~~~~----~~~~~~c~~c~~~ 110 (553)
.....|.-|++.. .++--|.+||+-+|. +|...|.. .+.|. +.+.- +...+-||.|+..
T Consensus 58 ~~~~~c~Ycgi~~p~~v~kc~~c~Kwfcn~r~gtsgshIv~hlv-ra~hk~v~lh~ds~lget~lecyncg~~ 129 (935)
T KOG1802|consen 58 LPEHACAYCGISEPACVIKCNTCGKWFCNSRGGTSGSHIVNHLV-RAKHKEVSLHKDSPLGETVLECYNCGSR 129 (935)
T ss_pred cchhhhhhccCCCchheeeccccCceeecCCCCCchhHHHHHHH-HhhhheeEeccCCCCCcceEEeeccCcc
Confidence 3344699997543 378899999999994 89999987 56663 33322 4556789999843
No 65
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.80 E-value=12 Score=23.38 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=8.5
Q ss_pred eEEecccCCccc
Q 008789 66 LYLCLICSSISC 77 (553)
Q Consensus 66 ~~~Cl~Cg~~~c 77 (553)
.|+|..||++.=
T Consensus 1 ~~~C~~CGy~y~ 12 (33)
T cd00350 1 KYVCPVCGYIYD 12 (33)
T ss_pred CEECCCCCCEEC
Confidence 377888887753
No 66
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.22 E-value=9.6 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.589 Sum_probs=23.3
Q ss_pred CCCCCcc---CCCCCCeEEecccCCcccchhHHh
Q 008789 53 IPRCCFC---NGYQKRLYLCLICSSISCSSHTLL 83 (553)
Q Consensus 53 ~~~c~~C---~~~~~~~~~Cl~Cg~~~c~~h~~~ 83 (553)
.++|-+| +.....+-+|++||.-.|-.|+..
T Consensus 7 ~mKCY~C~eeGKDtdAV~iCIVCG~GlC~EHli~ 40 (76)
T COG4855 7 MMKCYDCAEEGKDTDAVGICIVCGMGLCMEHLIR 40 (76)
T ss_pred hhHHHHHHHhCCCcccEEEEEEeCchHHHHHHHh
Confidence 3457777 334568899999999999877664
No 67
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=39.80 E-value=23 Score=25.26 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=18.8
Q ss_pred CCCCCCccCCCCCCeEEecccCCc
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSI 75 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~ 75 (553)
....|..|+.....=.+|..||++
T Consensus 25 ~l~~C~~cG~~~~~H~vc~~cG~Y 48 (55)
T TIGR01031 25 TLVVCPNCGEFKLPHRVCPSCGYY 48 (55)
T ss_pred cceECCCCCCcccCeeECCccCeE
Confidence 445699997666778999999975
No 68
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=39.12 E-value=16 Score=24.43 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=14.1
Q ss_pred cCCCCCCeEEecccCCcccchhHH
Q 008789 59 CNGYQKRLYLCLICSSISCSSHTL 82 (553)
Q Consensus 59 C~~~~~~~~~Cl~Cg~~~c~~h~~ 82 (553)
|.........|-.|+..+|..|.+
T Consensus 6 C~~~~~~~~~C~~C~~~FC~~Hr~ 29 (43)
T PF01428_consen 6 CKKKDFLPFKCKHCGKSFCLKHRL 29 (43)
T ss_dssp T--BCTSHEE-TTTS-EE-TTTHS
T ss_pred CcCccCCCeECCCCCcccCccccC
Confidence 643334578999999999986655
No 69
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=38.64 E-value=14 Score=31.63 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=26.4
Q ss_pred CCCCCCCccCCCCCCeEEecccCCcccc-hhHHhhhc
Q 008789 51 TEIPRCCFCNGYQKRLYLCLICSSISCS-SHTLLHSQ 86 (553)
Q Consensus 51 ~~~~~c~~C~~~~~~~~~Cl~Cg~~~c~-~h~~~H~~ 86 (553)
....+|.+|+ -..+|.|..||.-.|. +....|.+
T Consensus 116 P~r~fCaVCG--~~S~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 116 PLRKFCAVCG--YDSKYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred CcchhhhhcC--CCchhHHHhcCCceeechhhhhccc
Confidence 3445899998 3689999999999997 55666653
No 70
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=35.71 E-value=28 Score=19.25 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=9.3
Q ss_pred EEecccCCcccc
Q 008789 67 YLCLICSSISCS 78 (553)
Q Consensus 67 ~~Cl~Cg~~~c~ 78 (553)
|.|-.||..+-.
T Consensus 1 y~C~~C~~~f~~ 12 (23)
T PF00096_consen 1 YKCPICGKSFSS 12 (23)
T ss_dssp EEETTTTEEESS
T ss_pred CCCCCCCCccCC
Confidence 578888888775
No 71
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=35.13 E-value=30 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=22.6
Q ss_pred ccccccccccceeEEEEe--ecCCceEEEEEeeeee
Q 008789 382 FFCENCQERQDSVKQMSI--KRLPLVLCLHIKRFEH 415 (553)
Q Consensus 382 ~~C~~C~~~~~a~k~~~i--~~lP~vL~i~LkRf~~ 415 (553)
|.|++|+...-..++.+. ..+-+++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 579999987655555443 2345667777777764
No 72
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=35.08 E-value=56 Score=35.14 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCceEEEEEEEEee-cc-C----------CCCCeEEEEecCCcEEEEcCcceEEecc
Q 008789 464 TSTEFEIFAVVTHS-GT-L----------DSGHYVTYLHLKDQWYKCDDAWITAVEE 508 (553)
Q Consensus 464 ~~~~Y~L~avV~H~-G~-~----------~~GHY~a~vr~~~~W~~~nD~~V~~v~~ 508 (553)
.+..|+|.+.||+. |+ . -.|||+ .++.+..||.+|-..|-..+.
T Consensus 520 ngimyrL~SAVCYK~~d~~~d~C~~~diflkG~yt-IlfTe~Gpw~YDP~s~~s~~s 575 (666)
T PF03292_consen 520 NGIMYRLKSAVCYKIGDQFFDGCNGNDIFLKGYYT-ILFTEMGPWMYDPLSIFSKNS 575 (666)
T ss_pred cceeeeeehhheeeccccccCCCCCCcceeceeEE-EEEecCCceeeCchhhcCcch
Confidence 36689999999994 32 2 136665 456777788888777655443
No 73
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=33.84 E-value=8.5 Score=36.15 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=41.4
Q ss_pred EEEEEeeccCCCCCeEEEEecCCcEEEEcCcceEEecccc--c------cCCCceEEEEEEecccccccccc
Q 008789 471 FAVVTHSGTLDSGHYVTYLHLKDQWYKCDDAWITAVEEEV--V------RASQCYMLFYAQKMLYYKANEDL 534 (553)
Q Consensus 471 ~avV~H~G~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~--v------~~~~aYlLfY~r~~~~~~~~~~~ 534 (553)
.|+|||.-. ||.+..|-+++||.+|-..--+--..+ + +..++|=+|-.+-++-....++.
T Consensus 104 rafICnl~e----HWF~iRKfg~qWfnlnSllagPellSdtyls~FL~qlq~egySIFVVkG~lP~~eadql 171 (315)
T KOG2935|consen 104 RAFICNLKE----HWFTIRKFGKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYSIFVVKGDLPDCEADQL 171 (315)
T ss_pred hhhhhcchh----hhhhHhhhcchhccchhhhcchHHHHHHHHHHHHHHHHhCCeeEEEEecCCCCccHhhh
Confidence 468888766 999999999999999865443321111 1 34789999999988754443333
No 74
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=33.71 E-value=24 Score=20.82 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=14.8
Q ss_pred CCCccC-CCCCCeEEecccCCcc
Q 008789 55 RCCFCN-GYQKRLYLCLICSSIS 76 (553)
Q Consensus 55 ~c~~C~-~~~~~~~~Cl~Cg~~~ 76 (553)
.|..|. ......-.|-.||+.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 366773 2345667888999876
No 75
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.17 E-value=19 Score=34.82 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=27.7
Q ss_pred CCCCccCCCCCCeEEecccCCcccchhHHhhhcCCCC
Q 008789 54 PRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENG 90 (553)
Q Consensus 54 ~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~ 90 (553)
.+|..|-. ....--|.-|||+||++....|..+.+.
T Consensus 240 ~kC~LCLe-~~~~pSaTpCGHiFCWsCI~~w~~ek~e 275 (293)
T KOG0317|consen 240 RKCSLCLE-NRSNPSATPCGHIFCWSCILEWCSEKAE 275 (293)
T ss_pred CceEEEec-CCCCCCcCcCcchHHHHHHHHHHccccC
Confidence 47999953 3556678999999999999998864333
No 76
>PHA00626 hypothetical protein
Probab=32.96 E-value=26 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=18.4
Q ss_pred CCCccCCCCCCeEEecccCCcccc
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCS 78 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~ 78 (553)
+|..|.. +.+.|.|-.||+.+.-
T Consensus 13 rcg~cr~-~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 13 KEKTMRG-WSDDYVCCDCGYNDSK 35 (59)
T ss_pred eeceecc-cCcceEcCCCCCeech
Confidence 5777763 5799999999999863
No 77
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.94 E-value=39 Score=31.65 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=31.4
Q ss_pred CCCcc-CCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeCCC
Q 008789 55 RCCFC-NGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPD 115 (553)
Q Consensus 55 ~c~~C-~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~~ 115 (553)
.|..| .+....+--| |||.+||...++=.+ ...+...|-.|+..|.+..
T Consensus 49 dCNICLd~akdPVvTl--CGHLFCWpClyqWl~----------~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 49 DCNICLDLAKDPVVTL--CGHLFCWPCLYQWLQ----------TRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred eeeeeccccCCCEEee--cccceehHHHHHHHh----------hcCCCeeCCccccccccce
Confidence 48888 4444444444 999999965554332 1234455678999987655
No 78
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=31.56 E-value=35 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=18.1
Q ss_pred CCCCCccCCCCCCeEEecccCCc
Q 008789 53 IPRCCFCNGYQKRLYLCLICSSI 75 (553)
Q Consensus 53 ~~~c~~C~~~~~~~~~Cl~Cg~~ 75 (553)
...|..|+.....-.+|+.||++
T Consensus 27 ~~~c~~cG~~~l~Hrvc~~cg~Y 49 (57)
T COG0333 27 LSVCPNCGEYKLPHRVCLKCGYY 49 (57)
T ss_pred ceeccCCCCcccCceEcCCCCCc
Confidence 45799997666778899999965
No 79
>PF14369 zf-RING_3: zinc-finger
Probab=31.28 E-value=31 Score=21.99 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=10.8
Q ss_pred cEEEcCCCCEEeC
Q 008789 101 ELYCVLCCDQVYD 113 (553)
Q Consensus 101 ~~~c~~c~~~v~d 113 (553)
..|||.|+..|.-
T Consensus 2 ~ywCh~C~~~V~~ 14 (35)
T PF14369_consen 2 RYWCHQCNRFVRI 14 (35)
T ss_pred CEeCccCCCEeEe
Confidence 5799999999863
No 80
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=31.27 E-value=22 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.645 Sum_probs=21.9
Q ss_pred CCCcc---CCCCCCeEEecccCCcccchhHHh
Q 008789 55 RCCFC---NGYQKRLYLCLICSSISCSSHTLL 83 (553)
Q Consensus 55 ~c~~C---~~~~~~~~~Cl~Cg~~~c~~h~~~ 83 (553)
+|-+| +.....+-+|..||.-.|..|...
T Consensus 2 kCY~Ca~~gkdt~AVavCivCG~GlC~~H~~~ 33 (68)
T PF09947_consen 2 KCYDCAEEGKDTDAVAVCIVCGAGLCMDHSKR 33 (68)
T ss_pred cchhhhhcCCCccceehHHhcCchhhHHHHhh
Confidence 46667 223467889999999999887764
No 81
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=29.09 E-value=97 Score=24.81 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=13.9
Q ss_pred ccccccccccceeEEEEeec
Q 008789 382 FFCENCQERQDSVKQMSIKR 401 (553)
Q Consensus 382 ~~C~~C~~~~~a~k~~~i~~ 401 (553)
-.|++|+.....-.++.+.+
T Consensus 66 ~~Cp~Cgh~rayF~qlQtRS 85 (105)
T KOG2906|consen 66 ATCPTCGHERAYFMQLQTRS 85 (105)
T ss_pred CcCCCCCCCceEEEEeeecc
Confidence 57999998776555555543
No 82
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=28.12 E-value=46 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.719 Sum_probs=17.4
Q ss_pred CCCccCCC---CCCeEEecccCCcccchh
Q 008789 55 RCCFCNGY---QKRLYLCLICSSISCSSH 80 (553)
Q Consensus 55 ~c~~C~~~---~~~~~~Cl~Cg~~~c~~h 80 (553)
+|..|... ..-.|.|-.|+...|..|
T Consensus 2 rC~vC~~~k~rk~T~~~C~~C~v~lC~~~ 30 (32)
T PF13842_consen 2 RCKVCSKKKRRKDTRYMCSKCDVPLCVEP 30 (32)
T ss_pred CCeECCcCCccceeEEEccCCCCcccCCC
Confidence 47777432 226799999988888643
No 83
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=27.13 E-value=46 Score=18.09 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=7.5
Q ss_pred EEecccCCcccc
Q 008789 67 YLCLICSSISCS 78 (553)
Q Consensus 67 ~~Cl~Cg~~~c~ 78 (553)
|.|-.||..+-.
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 678888887775
No 84
>PF15616 TerY-C: TerY-C metal binding domain
Probab=26.49 E-value=50 Score=28.21 Aligned_cols=25 Identities=28% Similarity=0.745 Sum_probs=20.1
Q ss_pred CCCCCCccCCCCCCeEEecccCCcccc
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSISCS 78 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~~c~ 78 (553)
..+.|.-|+. ....-+| .||+++|.
T Consensus 76 g~PgCP~CGn-~~~fa~C-~CGkl~Ci 100 (131)
T PF15616_consen 76 GAPGCPHCGN-QYAFAVC-GCGKLFCI 100 (131)
T ss_pred CCCCCCCCcC-hhcEEEe-cCCCEEEe
Confidence 4478999974 5678888 99999994
No 85
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=26.19 E-value=46 Score=35.54 Aligned_cols=44 Identities=23% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEE
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELY 103 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~ 103 (553)
.|.+|+. ....|+|+..|.+.|...+-.|.. .+| .|..-+.+.|
T Consensus 25 ~CADCgs-~~P~WASiNlGIFICi~CSGIHRs--LGh--RVKSLSLDkW 68 (648)
T PLN03119 25 RCINCNS-LGPQYVCTTFWTFVCMACSGIHRE--FTH--RVKSVSMSKF 68 (648)
T ss_pred ccccCCC-CCCCceeeccceEEeccchhhhcc--CCc--eeeccccCCC
Confidence 6999985 568899999999999988888874 356 3444333333
No 86
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=26.03 E-value=32 Score=21.14 Aligned_cols=21 Identities=29% Similarity=0.795 Sum_probs=12.2
Q ss_pred CCCCccC----CCCCCeEEecccCC
Q 008789 54 PRCCFCN----GYQKRLYLCLICSS 74 (553)
Q Consensus 54 ~~c~~C~----~~~~~~~~Cl~Cg~ 74 (553)
+.|..|+ .....+++|-.||+
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGH 27 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTE
T ss_pred CCCCCCCCcceeccCCEEeCCcccc
Confidence 4688884 23457889999986
No 87
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=24.57 E-value=2.5e+02 Score=24.27 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=43.8
Q ss_pred cCCceEEEEEeeeeecCC---cccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEee
Q 008789 401 RLPLVLCLHIKRFEHFPV---RRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHS 477 (553)
Q Consensus 401 ~lP~vL~i~LkRf~~~~~---~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~ 477 (553)
.--+-+.+-++||.|... ....++...-+.|...+.+..- .-+..+.....+|.||-.+.
T Consensus 32 ~~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~-----------------gi~~~~~d~vLsLLai~fe~ 94 (138)
T PF11164_consen 32 PKERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSR-----------------GIDRKDPDAVLSLLAITFEP 94 (138)
T ss_pred ccCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeec-----------------CCCCCCCCceEEEEEEEEEe
Confidence 334678999999999843 1223444455555554444211 01123456789999999999
Q ss_pred ccCCCCCeEE
Q 008789 478 GTLDSGHYVT 487 (553)
Q Consensus 478 G~~~~GHY~a 487 (553)
|...+||-.-
T Consensus 95 ~e~p~G~v~L 104 (138)
T PF11164_consen 95 GEAPAGHVLL 104 (138)
T ss_pred CCCCCcEEEE
Confidence 8877777543
No 88
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=27 Score=33.34 Aligned_cols=26 Identities=23% Similarity=0.635 Sum_probs=21.1
Q ss_pred CCCccCCCCCCeEEecccCCcccchhH
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCSSHT 81 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~~h~ 81 (553)
+|..|.. ..+.-.|..|||+||+...
T Consensus 217 kC~lC~e-~~~~ps~t~CgHlFC~~Cl 242 (271)
T COG5574 217 KCFLCLE-EPEVPSCTPCGHLFCLSCL 242 (271)
T ss_pred ceeeeec-ccCCcccccccchhhHHHH
Confidence 5999964 5788999999999997433
No 89
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.57 E-value=31 Score=36.86 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=20.4
Q ss_pred ccCCCCCCCcCCHHHHHHHHHHHHH
Q 008789 259 HSANLASYEQQDAHEFFISMLDGIH 283 (553)
Q Consensus 259 ~~~~f~~~~QqDA~Efl~~lL~~L~ 283 (553)
....+.+..-.++.+|+..++..|.
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhh
Confidence 3345677788899999999999986
No 90
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=22.54 E-value=1e+02 Score=26.92 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=10.3
Q ss_pred CeEEecccCCccc
Q 008789 65 RLYLCLICSSISC 77 (553)
Q Consensus 65 ~~~~Cl~Cg~~~c 77 (553)
..|.|-.||+++=
T Consensus 123 ~f~~C~~C~kiyW 135 (147)
T PF01927_consen 123 EFWRCPGCGKIYW 135 (147)
T ss_pred eEEECCCCCCEec
Confidence 4788888888875
No 91
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=44 Score=33.00 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=31.0
Q ss_pred CCCCCCCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCe
Q 008789 50 QTEIPRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHD 92 (553)
Q Consensus 50 ~~~~~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~ 92 (553)
..+...|..|.....|.-+|-+-|+|+|...+..|-. +-+||
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~C 338 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHC 338 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCC
Confidence 3455579999655678899999999999877776665 34554
No 92
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=21.96 E-value=65 Score=20.40 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=8.7
Q ss_pred CCeEEecccCCcc
Q 008789 64 KRLYLCLICSSIS 76 (553)
Q Consensus 64 ~~~~~Cl~Cg~~~ 76 (553)
..-++|-.||.+.
T Consensus 20 r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 20 RERLVCPACGFIH 32 (34)
T ss_dssp S-EEEETTTTEEE
T ss_pred ccceECCCCCCEE
Confidence 4557888888763
No 93
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=21.64 E-value=39 Score=32.99 Aligned_cols=43 Identities=28% Similarity=0.498 Sum_probs=32.3
Q ss_pred CCCCccCCCCCCeEEecc-cCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEe
Q 008789 54 PRCCFCNGYQKRLYLCLI-CSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVY 112 (553)
Q Consensus 54 ~~c~~C~~~~~~~~~Cl~-Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~ 112 (553)
-+|..|+. ..-+|=-|. |-++||-..|..|.. -.|+.|+|.|.
T Consensus 91 HfCd~Cd~-PI~IYGRmIPCkHvFCl~CAr~~~d---------------K~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDF-PIAIYGRMIPCKHVFCLECARSDSD---------------KICPLCDDRVQ 134 (389)
T ss_pred EeecccCC-cceeeecccccchhhhhhhhhcCcc---------------ccCcCcccHHH
Confidence 46899985 567777665 999999888887652 25999998773
No 94
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.28 E-value=65 Score=19.46 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=8.7
Q ss_pred CCCccCCCCC--CeEEecccCCcc
Q 008789 55 RCCFCNGYQK--RLYLCLICSSIS 76 (553)
Q Consensus 55 ~c~~C~~~~~--~~~~Cl~Cg~~~ 76 (553)
.|..|+.... ..|.|..|.+..
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~l 25 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDL 25 (30)
T ss_dssp --TTTS----S--EEE-TTT----
T ss_pred cCCcCCCcCCCCceEECccCCCcc
Confidence 4888854333 589999998765
No 95
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=20.78 E-value=30 Score=24.74 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=16.7
Q ss_pred CCCCCCccCCCCCCeEEecccCCc
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSI 75 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~ 75 (553)
....|..|+.....-.+|..||++
T Consensus 25 ~l~~c~~cg~~~~~H~vc~~cG~y 48 (56)
T PF01783_consen 25 NLVKCPNCGEPKLPHRVCPSCGYY 48 (56)
T ss_dssp SEEESSSSSSEESTTSBCTTTBBS
T ss_pred ceeeeccCCCEecccEeeCCCCeE
Confidence 334688886555566889999854
No 96
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.41 E-value=50 Score=29.53 Aligned_cols=13 Identities=15% Similarity=0.682 Sum_probs=11.0
Q ss_pred eEEecccCCcccc
Q 008789 66 LYLCLICSSISCS 78 (553)
Q Consensus 66 ~~~Cl~Cg~~~c~ 78 (553)
+|+|..||++.=|
T Consensus 134 ~~vC~vCGy~~~g 146 (166)
T COG1592 134 VWVCPVCGYTHEG 146 (166)
T ss_pred EEEcCCCCCcccC
Confidence 8999999988643
No 97
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=20.11 E-value=4.7e+02 Score=21.08 Aligned_cols=32 Identities=6% Similarity=0.144 Sum_probs=25.8
Q ss_pred CCcEEEEcCcceEEeccccccCCCceEEEEEE
Q 008789 492 KDQWYKCDDAWITAVEEEVVRASQCYMLFYAQ 523 (553)
Q Consensus 492 ~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r 523 (553)
.|+||.+....|.+....--.....|.+...+
T Consensus 67 eG~vy~i~~~~V~~a~~~y~~~~~~yeI~f~~ 98 (104)
T cd04474 67 VGKVYYISKGSVKVANKKFNTLKNDYEITFNR 98 (104)
T ss_pred cccEEEEeccEEeeccccCCCCCCcEEEEECC
Confidence 47999999999999886666667888877654
No 98
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=20.09 E-value=1e+02 Score=22.21 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.6
Q ss_pred CCCCCeEEEEecCCcEEEEcC
Q 008789 480 LDSGHYVTYLHLKDQWYKCDD 500 (553)
Q Consensus 480 ~~~GHY~a~vr~~~~W~~~nD 500 (553)
....|.+.-++.+++|+.+|=
T Consensus 46 ~~~~H~W~ev~~~~~W~~~D~ 66 (68)
T smart00460 46 IWEAHAWAEVYLEGGWVPVDP 66 (68)
T ss_pred CCCcEEEEEEEECCCeEEEeC
Confidence 356799999999999999983
Done!