Query 008789
Match_columns 553
No_of_seqs 363 out of 2343
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 11:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhs_A Ubiquitin carboxyl-term 100.0 2.7E-82 9.2E-87 673.7 29.1 443 11-526 6-475 (476)
2 3ihp_A Ubiquitin carboxyl-term 100.0 1.9E-79 6.6E-84 682.9 33.0 441 54-525 216-853 (854)
3 2y6e_A Ubiquitin carboxyl-term 100.0 1E-67 3.5E-72 543.3 30.1 333 174-527 3-361 (367)
4 3nhe_A Ubiquitin carboxyl-term 100.0 9.1E-66 3.1E-70 525.5 28.4 317 173-526 3-344 (348)
5 2gfo_A Ubiquitin carboxyl-term 100.0 3.4E-66 1.2E-70 535.6 25.2 315 174-525 57-396 (396)
6 3i3t_A Ubiquitin carboxyl-term 100.0 7.7E-65 2.6E-69 520.1 23.3 313 178-526 2-352 (355)
7 1nb8_A Ubiquitin carboxyl-term 100.0 1.4E-63 4.7E-68 508.8 27.7 297 176-526 3-316 (353)
8 2ayn_A Ubiquitin carboxyl-term 100.0 2.2E-62 7.6E-67 510.6 24.7 328 176-529 11-398 (404)
9 1vjv_A Ubiquitin carboxyl-term 100.0 5.9E-61 2E-65 501.0 23.3 314 175-526 20-415 (415)
10 2f1z_A Ubiquitin carboxyl-term 100.0 3E-60 1E-64 508.5 27.3 301 173-527 169-486 (522)
11 2vhf_A Ubiquitin carboxyl-term 100.0 9.6E-32 3.3E-36 262.8 11.6 240 179-500 9-308 (374)
12 3c5k_A HD6, histone deacetylas 99.8 6.1E-22 2.1E-26 161.4 6.6 77 54-132 25-105 (109)
13 2g45_A Ubiquitin carboxyl-term 99.8 1E-19 3.4E-24 152.6 6.6 75 53-134 34-123 (129)
14 2uzg_A Ubiquitin carboxyl-term 99.8 1.6E-19 5.4E-24 144.6 4.9 62 54-116 26-94 (97)
15 2ida_A Hypothetical protein; z 99.7 7.2E-18 2.5E-22 134.0 5.6 62 53-115 18-89 (102)
16 2i50_A Ubiquitin carboxyl-term 99.7 3E-17 1E-21 137.6 7.8 56 63-119 51-114 (126)
17 3mp2_A Non-structural protein 97.6 0.00045 1.6E-08 62.1 11.7 70 177-279 11-80 (211)
18 2fe8_A PP1AB, ORF1AB, replicas 97.1 0.0055 1.9E-07 58.9 13.3 75 176-279 99-174 (315)
19 3ihp_A Ubiquitin carboxyl-term 89.2 0.38 1.3E-05 53.6 5.8 43 54-97 47-92 (854)
20 1x4w_A Hypothetical protein FL 86.5 0.28 9.5E-06 35.2 1.6 29 52-82 14-47 (67)
21 1wg2_A Zinc finger (AN1-like) 86.4 0.53 1.8E-05 33.4 3.0 30 52-82 14-44 (64)
22 1wfh_A Zinc finger (AN1-like) 84.8 0.75 2.6E-05 32.6 3.1 30 52-82 14-44 (64)
23 1qmy_A Protease, leader protea 83.1 0.55 1.9E-05 38.7 2.2 29 481-509 117-145 (167)
24 2xzl_A ATP-dependent helicase 79.6 1 3.5E-05 49.8 3.6 55 54-109 12-79 (802)
25 1wfp_A Zinc finger (AN1-like) 79.0 1.1 3.9E-05 32.6 2.4 32 50-82 22-54 (74)
26 1wff_A Riken cDNA 2810002D23 p 71.5 2.8 9.6E-05 31.6 2.9 32 51-83 23-56 (85)
27 3lrq_A E3 ubiquitin-protein li 59.2 2.8 9.6E-05 32.8 0.9 46 55-112 24-69 (100)
28 1wfl_A Zinc finger protein 216 58.5 4.4 0.00015 29.5 1.7 30 52-82 24-54 (74)
29 2wjy_A Regulator of nonsense t 56.4 5.5 0.00019 44.0 3.0 55 54-109 7-74 (800)
30 2ww6_A Fibritin, T4 fibritin; 55.1 5.2 0.00018 22.6 1.2 15 486-500 11-25 (27)
31 3o65_A Putative ataxin-3-like 51.4 15 0.00051 32.4 4.3 53 470-526 110-170 (191)
32 1x4v_A Hypothetical protein LO 46.2 16 0.00053 25.9 2.9 30 53-82 12-43 (63)
33 1v8h_A Sulfur oxidation protei 44.6 96 0.0033 24.3 7.8 55 465-524 16-80 (107)
34 2oxg_Z SOXZ protein; immunoglo 42.7 80 0.0027 24.9 7.0 55 465-524 17-81 (108)
35 2ecj_A Tripartite motif-contai 38.5 24 0.00082 23.7 3.0 33 52-85 14-46 (58)
36 2ecw_A Tripartite motif-contai 38.4 33 0.0011 25.0 4.1 54 52-113 18-71 (85)
37 2jun_A Midline-1; B-BOX, TRIM, 37.0 18 0.00063 27.9 2.5 31 55-85 5-38 (101)
38 1qmy_A Protease, leader protea 35.7 27 0.00091 28.9 3.1 23 179-201 13-35 (167)
39 3a43_A HYPD, hydrogenase nicke 35.3 40 0.0014 28.0 4.4 42 272-326 41-82 (139)
40 2ffw_A Midline-1; B-BOX, ring 35.0 19 0.00066 26.6 2.1 33 54-86 31-66 (78)
41 1wys_A Riken cDNA 2310008M20 p 33.4 24 0.00082 25.9 2.3 28 55-82 16-45 (75)
42 1wfe_A Riken cDNA 2310008M20 p 30.7 17 0.0006 27.4 1.2 29 54-82 26-56 (86)
43 4ayb_P DNA-directed RNA polyme 28.3 15 0.00051 24.1 0.4 12 66-77 3-14 (48)
44 6rxn_A Rubredoxin; electron tr 28.3 21 0.00072 23.4 1.1 11 66-76 4-14 (46)
45 2csy_A Zinc finger protein 183 28.3 51 0.0017 24.0 3.5 46 53-112 15-60 (81)
46 2yur_A Retinoblastoma-binding 27.6 67 0.0023 22.9 4.0 47 53-111 15-62 (74)
47 2egp_A Tripartite motif-contai 27.6 20 0.00068 26.0 1.1 55 52-113 11-65 (79)
48 1z6u_A NP95-like ring finger p 27.5 34 0.0012 28.8 2.7 48 54-114 79-126 (150)
49 2ecy_A TNF receptor-associated 27.0 24 0.00083 24.6 1.4 32 53-85 15-46 (66)
50 2els_A Zinc finger protein 406 26.4 38 0.0013 19.5 2.1 23 63-85 6-33 (36)
51 1jm7_A BRCA1, breast cancer ty 25.7 44 0.0015 26.1 3.0 48 55-113 23-70 (112)
52 2kvh_A Zinc finger and BTB dom 25.4 34 0.0012 18.0 1.6 13 66-78 3-15 (27)
53 1chc_A Equine herpes virus-1 r 24.7 49 0.0017 23.0 2.8 33 54-86 6-38 (68)
54 2m0d_A Zinc finger and BTB dom 24.6 37 0.0013 18.1 1.7 13 66-78 3-15 (30)
55 2y43_A E3 ubiquitin-protein li 24.3 41 0.0014 25.7 2.4 46 55-113 24-69 (99)
56 2m0e_A Zinc finger and BTB dom 23.3 30 0.001 18.3 1.2 19 67-85 3-26 (29)
57 2ckl_B Ubiquitin ligase protei 22.3 38 0.0013 28.9 2.0 46 55-112 56-101 (165)
58 1srk_A Zinc finger protein ZFP 22.2 54 0.0018 18.6 2.2 22 64-85 5-31 (35)
59 2ecv_A Tripartite motif-contai 21.8 75 0.0026 23.0 3.4 54 52-113 18-71 (85)
60 2djb_A Polycomb group ring fin 21.7 75 0.0026 22.4 3.3 48 53-113 15-62 (72)
61 2m0f_A Zinc finger and BTB dom 21.7 42 0.0015 17.7 1.6 20 66-85 2-26 (29)
62 2zjr_Z 50S ribosomal protein L 21.5 22 0.00074 24.9 0.2 24 52-75 29-52 (60)
63 1dl6_A Transcription factor II 21.1 77 0.0026 21.7 3.0 19 93-111 22-40 (58)
64 1rim_A E6APC2 peptide; E6-bind 20.9 47 0.0016 18.8 1.7 20 67-86 3-27 (33)
65 3v2d_5 50S ribosomal protein L 20.7 19 0.00064 25.2 -0.2 24 52-75 29-52 (60)
66 2elt_A Zinc finger protein 406 20.6 56 0.0019 18.6 2.1 22 64-85 7-33 (36)
67 2ckl_A Polycomb group ring fin 20.6 55 0.0019 25.4 2.5 46 55-113 17-62 (108)
68 1yk4_A Rubredoxin, RD; electro 20.4 37 0.0013 22.9 1.2 7 67-73 3-9 (52)
69 3by4_A OTU1, ubiquitin thioest 20.0 22 0.00075 32.0 0.0 28 65-93 179-207 (212)
70 1njq_A Superman protein; zinc- 20.0 69 0.0024 18.8 2.5 22 64-85 4-30 (39)
No 1
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2.7e-82 Score=673.73 Aligned_cols=443 Identities=31% Similarity=0.591 Sum_probs=342.2
Q ss_pred CCCCcchHHHH--HhcCC---CchhhhhhhhhcCCCCcccccccCCCCCCCCccCCCC-CCeEEecccCCcccc--hhHH
Q 008789 11 PKPCKHLADYK--LRHGL---SGYNLLQEQIRTTPSGKSSVKNHQTEIPRCCFCNGYQ-KRLYLCLICSSISCS--SHTL 82 (553)
Q Consensus 11 ~~~C~H~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~~~~-~~~~~Cl~Cg~~~c~--~h~~ 82 (553)
+++|||+.+++ .+... +++..++-.+...+ .+......+.|..|.... .++|+||+||++||| +||+
T Consensus 6 ~~~C~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~C~~c~~~~~~~~~~cl~cg~~~c~~~~h~~ 80 (476)
T 3mhs_A 6 MSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSV-----PKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFL 80 (476)
T ss_dssp CCCCHHHHHHTTSHHHHHHHHHHHHHHHHHHHSSC-----HHHHHHHHSBCTTTCCBCSSSEEEESSSSCEEETTTTHHH
T ss_pred ccCCcCHHHHhcchhhHHHHHHHhHHHHHhhccCc-----hhhcccCCCCcccccCCCCCCceEeCCCCCCccCCchHHH
Confidence 37999999984 22222 22222222222111 111112234699996544 799999999999997 8999
Q ss_pred hhhcCCCCCeEEEECCCCcEEEcCCCCEEeCCChhhHHHHhhhhccCCCCCCCCCccccccccccccchhhhhhhhhhhh
Q 008789 83 LHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFDKIVMLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKKTKQ 162 (553)
Q Consensus 83 ~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~~~ 162 (553)
.|+. +++|+++|+++++++|||+|+++|+|+++.+.. .+. +. |..
T Consensus 81 ~H~~-~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~~~---~~~------------------~~----------~~~--- 125 (476)
T 3mhs_A 81 SHSK-QIGHIFGINSNNGLLFCFKCEDYIGNIDLINDA---ILA------------------KY----------WDD--- 125 (476)
T ss_dssp HHHH-HHCCCEEEETTTCCEEETTTTEEECSCHHHHTG---GGG------------------GG----------HHH---
T ss_pred HHhc-ccCCcEEEECCCCcEEeCCCCCCcccHHHHHHH---Hhh------------------hc----------cch---
Confidence 9998 799999999999999999999999998853211 000 00 000
Q ss_pred hhhccccccccCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcC
Q 008789 163 LVSMRDLRAKSCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSG 242 (553)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~ 242 (553)
...........+.+|++||.|+|||||||||||+|+++|+|+++++...+.. .+. ...+..++.++|..+|..+++.
T Consensus 126 -~~~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~-~~~-~~~~~~~l~~~l~~l~~~l~~~ 202 (476)
T 3mhs_A 126 -VCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSN-NCK-VRSPDKCFSCALDKIVHELYGA 202 (476)
T ss_dssp -HHHHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHH-HCS-SCCTTTCHHHHHHHHHHHHHSC
T ss_pred -hhhcccCCCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhh-hcc-CCCcccchHHHHHHHHHHHhhc
Confidence 0000111224567899999999999999999999999999999998643321 111 2345678999999999999974
Q ss_pred CCC---------ccChHH---HHHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCC-----CCCCCCCcccccee
Q 008789 243 DRT---------PYSPAQ---LLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARS-----PIKDTGECHCVAHR 305 (553)
Q Consensus 243 ~~~---------~i~p~~---~l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~-----~~~~~~~~~~~i~~ 305 (553)
... .+.|.. ++..+|+..+.|.+++||||+|||.+||+.|+++...... .........++|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~ 282 (476)
T 3mhs_A 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHT 282 (476)
T ss_dssp CCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHH
T ss_pred ccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCccee
Confidence 321 344554 5556678999999999999999999999999986432111 11122334578999
Q ss_pred eeeEEEeeEEEeCCCCCccc-cccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccc
Q 008789 306 VFSGQLRSDVTCMSCGYTST-TYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFC 384 (553)
Q Consensus 306 ~F~g~l~~~i~C~~C~~~s~-~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C 384 (553)
+|+|++.++++|..|+.++. +.++|++|+|+||... +|+++|+.|+.+|.+++. .|.|
T Consensus 283 ~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~--------------------sl~~~L~~~~~~E~l~~~-~~~C 341 (476)
T 3mhs_A 283 VFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK--------------------KLYECLDSFHKKEQLKDF-NYHC 341 (476)
T ss_dssp HSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCC--------------------BHHHHHHHHHCCEECSSC-CCEE
T ss_pred ecceEEEEEEEECCCCCeeCCcccchhhhccchhhhh--------------------HHHHHHHHhcChhhccCC-CCcC
Confidence 99999999999999999974 5899999999998654 999999999999999864 4999
Q ss_pred cccccccceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCC
Q 008789 385 ENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDT 464 (553)
Q Consensus 385 ~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (553)
++|+.++.++|+.+|.++|+||+|||+||.++. .+...|+++.|.||+.|||++|+........ .......
T Consensus 342 ~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~-~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~--------~~~~~~~ 412 (476)
T 3mhs_A 342 GECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDKH--------SENGKVP 412 (476)
T ss_dssp TTTTEECCCEEEEEEEEBCSEEEEEECCEEECT-TSCEEECCCCCBCCSEEECGGGBSCCBCCC----------CCCBCC
T ss_pred CccCCcccEEEEEEcccCCcceEEEeeeccccC-CCCeEECCEEEcCCCeeechhhcCccccccc--------ccccCCC
Confidence 999999999999999999999999999999874 4668899999999999999999976432110 0112345
Q ss_pred CceEEEEEEEEeeccCCCCCeEEEEec-CCcEEEEcCcceEEeccccccCCCceEEEEEEecc
Q 008789 465 STEFEIFAVVTHSGTLDSGHYVTYLHL-KDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKML 526 (553)
Q Consensus 465 ~~~Y~L~avV~H~G~~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~~ 526 (553)
...|+|+|||+|.|++++|||++|+|. +++||+|||+.|+++++++|...+||||||+|+++
T Consensus 413 ~~~Y~L~avv~H~G~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 413 DIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEeCCCCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence 678999999999999999999999997 78999999999999999999999999999999875
No 2
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-79 Score=682.87 Aligned_cols=441 Identities=20% Similarity=0.346 Sum_probs=332.4
Q ss_pred CCCCccCCCCCCeEEecccCCcccc----------hhHHhhhcCCCCCeEEEECCC-----CcEEEcCCCCEEeCCChhh
Q 008789 54 PRCCFCNGYQKRLYLCLICSSISCS----------SHTLLHSQCENGHDIAVDIER-----SELYCVLCCDQVYDPDFDK 118 (553)
Q Consensus 54 ~~c~~C~~~~~~~~~Cl~Cg~~~c~----------~h~~~H~~~~~~H~~~~~~~~-----~~~~c~~c~~~v~d~~~~~ 118 (553)
+.|..|.. ..++|+||+||++||| +||+.|+. +++|+++|++.+ ++||||+|+++|+|+.+++
T Consensus 216 ~~C~~c~~-~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~-~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~~~~l~~ 293 (854)
T 3ihp_A 216 WKCSKCDM-RENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYR-ETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAE 293 (854)
T ss_dssp CCCSSSCC-CSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHH-HHCCCEEEETTCCBTTBCCEEETTTTEECBCTTHHH
T ss_pred CcCcCcCC-cCceEEEecCCCccccccccCCCCCchHHHHHHh-hcCCcEEEEcCCcCCCCCeEEEccCCCeeeCccHHH
Confidence 58999985 5799999999999997 69999998 799999999999 9999999999999999654
Q ss_pred HHHHhhhhccCCCCCCCCCccccccccccccchhhhhhhhh-hhhhhhccccccccCCCCcccccccCCCcchhHHHHHH
Q 008789 119 IVMLKHLMDLPRSGNGVDVSAGRRSSKRRRLCSALELDLKK-TKQLVSMRDLRAKSCYPLGLRGLNNLGSTCFMNSVLQA 197 (553)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~g~~GL~NlGNtCY~NsvLQ~ 197 (553)
++.+++++... ..+.++...+...+.+... ++......+....+.+++|++||.|+|||||||||||+
T Consensus 294 -----~l~~~gi~~~~------~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~p~~~~G~~GL~NlGNTCYmNSvLQ~ 362 (854)
T 3ihp_A 294 -----HLSHFGIDMLK------MQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQV 362 (854)
T ss_dssp -----HHHHTTCCC-----------------------------------------CCCSTTCCCBCCCSSCHHHHHHHHH
T ss_pred -----HHHHhCccccc------ccccchhhhhhhhhhccccchhhhhcccCcccccccCCCccceEecCCceehhHHHHH
Confidence 44555554322 1122222222222222222 22333344445568899999999999999999999999
Q ss_pred HhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCC--------------------CCccChHHHHHHHH
Q 008789 198 LLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGD--------------------RTPYSPAQLLYSWW 257 (553)
Q Consensus 198 L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--------------------~~~i~p~~~l~~l~ 257 (553)
|+++|+||++|+........ .....+..++.++|.+||..|+++. ...++|..|+..++
T Consensus 363 L~~~p~fr~~ll~~~~~~~~-~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~ 441 (854)
T 3ihp_A 363 LFSIPDFQRKYVDKLEKIFQ-NAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIG 441 (854)
T ss_dssp HTTSHHHHHHHTTTHHHHHH-HCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBCCHHHHHHHT
T ss_pred HhCcHHHHHHHHhhhhhhhc-cccCCccccHHHHHHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHHh
Confidence 99999999999853321110 1223456789999999999999753 44899999999999
Q ss_pred hccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeeccC
Q 008789 258 QHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNL 337 (553)
Q Consensus 258 ~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i 337 (553)
..++.|.+++||||+|||.+||+.|+++.... +.+.++|+|++.++++|..|++++.+.++|++|+|+|
T Consensus 442 ~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~~-----------s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~I 510 (854)
T 3ihp_A 442 KGHPEFSTNRQQDAQEFFLHLINMVERNCRSS-----------ENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPV 510 (854)
T ss_dssp TTCTTTTSSSCCBHHHHHHHHHHHHHHTCTTS-----------CCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECC
T ss_pred hhccccccccccCHHHHHHHHHHHHHHHhccc-----------CCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeC
Confidence 99999999999999999999999999987431 4788999999999999999999999999999999999
Q ss_pred CCCCCCCcc------------cccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCce
Q 008789 338 DTGNCPSTD------------LANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLV 405 (553)
Q Consensus 338 ~~~~~~~~~------------~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~v 405 (553)
|........ .......+.......+|++||+.|+.+|.+++ |+|++|+.++.++|+.+|.+||+|
T Consensus 511 p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~v 587 (854)
T 3ihp_A 511 PMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDY 587 (854)
T ss_dssp CGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSE
T ss_pred CccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCce
Confidence 974311100 00000111223445799999999999999973 999999999999999999999999
Q ss_pred EEEEEeeeeecCCcccccccccccccCcccCCCccccccccccccC----------------------------------
Q 008789 406 LCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFG---------------------------------- 451 (553)
Q Consensus 406 L~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~---------------------------------- 451 (553)
|+||||||.++. .+...|+++.|.||..|||++|+..+.......
T Consensus 588 LiihLkRF~~d~-~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~ 666 (854)
T 3ihp_A 588 LVIQIKKFTFGL-DWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPM 666 (854)
T ss_dssp EEEEECCEEECG-GGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC----------------CHHHHHHHHHTCCH
T ss_pred EEEEeehheecC-CCceEECCeEEecCCcEehHHhccCCCCCCceecccccccccccccccccCcCHHHHHHHHhcCCCH
Confidence 999999999974 367889999999999999999987532110000
Q ss_pred -----------Cc-----------------c-------------------------------------------------
Q 008789 452 -----------NR-----------------M------------------------------------------------- 454 (553)
Q Consensus 452 -----------~~-----------------~------------------------------------------------- 454 (553)
+. .
T Consensus 667 ~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~ 746 (854)
T 3ihp_A 667 DACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNN 746 (854)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 00 0
Q ss_pred -------------------------------------cccCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEecCCcEE
Q 008789 455 -------------------------------------FAFEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHLKDQWY 496 (553)
Q Consensus 455 -------------------------------------~~~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~~~~W~ 496 (553)
........+.+..|+|+|||+|.|. +++|||+||+|.+++||
T Consensus 747 ~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~~~~W~ 826 (854)
T 3ihp_A 747 SLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWV 826 (854)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEETTEEE
T ss_pred cHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEEEEEEeecCCCCCcCeEEEEEeCCEEE
Confidence 0000012233458999999999997 88999999999999999
Q ss_pred EEcCcceEEeccccccCCCceEEEEEEec
Q 008789 497 KCDDAWITAVEEEVVRASQCYMLFYAQKM 525 (553)
Q Consensus 497 ~~nD~~V~~v~~~~v~~~~aYlLfY~r~~ 525 (553)
+|||+.|+++ +++....||||||+|.+
T Consensus 827 ~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 827 IYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred EEECCeeEEc--cccCCCcceEEEEEecC
Confidence 9999999997 34567899999999975
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1e-67 Score=543.35 Aligned_cols=333 Identities=29% Similarity=0.540 Sum_probs=273.5
Q ss_pred CCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCcccccc-CCCCccchHHHHHHHHHHHhcCCCCccChHHH
Q 008789 174 CYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRK-RSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQL 252 (553)
Q Consensus 174 ~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 252 (553)
.+.+|++||.|+|||||||||||+|+++|+|+++|+...+....... ......++..+|..||..||++....++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 45789999999999999999999999999999999976543322111 11123468999999999999998889999999
Q ss_pred HHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCC-----CCC----------------CccccceeeeeEEE
Q 008789 253 LYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIK-----DTG----------------ECHCVAHRVFSGQL 311 (553)
Q Consensus 253 l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~-----~~~----------------~~~~~i~~~F~g~l 311 (553)
+.+++...+.|.+++||||||||.+||+.||++......... ..+ ...++|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 999999999999999999999999999999988654321100 000 12467899999999
Q ss_pred eeEEEeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCC-CCCCCccCHHHHHHhccCCcccCCCCcccccccccc
Q 008789 312 RSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKP-SDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQER 390 (553)
Q Consensus 312 ~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~-~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~ 390 (553)
.++++|..|++++.+.++|++|+|+||......... ....+ .......+|++||+.|+.+|.+++++.|+|++|+++
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~--~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~ 240 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEG--PMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH 240 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC---------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCccee--eeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC
Confidence 999999999999999999999999999743100000 00000 001234699999999999999999999999999999
Q ss_pred cceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCc-ccCCCccccccccccccCCcccccCCCCCCCCceEE
Q 008789 391 QDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPF-CLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFE 469 (553)
Q Consensus 391 ~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 469 (553)
+.++|+..|.++|+||+|||+||.++ .+...|+++.|.||. .|||++|+... ......|+
T Consensus 241 ~~a~K~~~i~~lP~vL~i~LkRF~~~--~~~~~K~~~~v~fp~~~Ldl~~~~~~~-----------------~~~~~~Y~ 301 (367)
T 2y6e_A 241 QQATKKFDLWSLPKILVVHLKRFSYN--RYWRDKLDTVVEFPIRGLNMSEFVCNL-----------------SARPYVYD 301 (367)
T ss_dssp ECCEEEEEEEECCSEEEEEEECEEEC--SSCEEECCCCEECCSSCEECGGGBSCS-----------------SSCCCEEE
T ss_pred ceEEEEEEEecCCcEEEEEEeCeeec--CccceecCceEEecCCcCChhhhccCC-----------------CCCCceEE
Confidence 99999999999999999999999997 456789999999997 79999998752 22457899
Q ss_pred EEEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEEeccccccCCCceEEEEEEeccc
Q 008789 470 IFAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKMLY 527 (553)
Q Consensus 470 L~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~~~ 527 (553)
|+|||+|.|.+++|||+||+|. +++||+|||+.|+++++++|...+||||||+|++.+
T Consensus 302 L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 302 LIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361 (367)
T ss_dssp EEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred EEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence 9999999999999999999997 589999999999999999999999999999998864
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=9.1e-66 Score=525.53 Aligned_cols=317 Identities=33% Similarity=0.600 Sum_probs=272.8
Q ss_pred cCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHh-cCCCCccChHH
Q 008789 173 SCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVF-SGDRTPYSPAQ 251 (553)
Q Consensus 173 ~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~i~p~~ 251 (553)
+...+|++||.|+|||||||||||+|+++|+||++++...+...... ......++.++|..||..+| ......++|..
T Consensus 3 sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~-~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH-GSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ---CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCS-SCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhcc-CCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 34578999999999999999999999999999999987543322211 12346689999999999999 56677899999
Q ss_pred HHHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCC---------------------CCccccceeeeeEE
Q 008789 252 LLYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDT---------------------GECHCVAHRVFSGQ 310 (553)
Q Consensus 252 ~l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~---------------------~~~~~~i~~~F~g~ 310 (553)
|+.+++...+.|.+++||||||||.+||+.|+++........... ....++|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 999999999999999999999999999999998754332111100 11235789999999
Q ss_pred EeeEEEeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccc
Q 008789 311 LRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQER 390 (553)
Q Consensus 311 l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~ 390 (553)
+.++++|..|++.+.+.++|++|+|+||... ....+|++||+.|+..|.+++++++.|++|+.+
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~----------------~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~ 225 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG----------------YPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGR 225 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSC----------------SSCEEHHHHHHHHHSCEEECGGGCCEETTTTEE
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcc----------------cCCCCHHHHHHHhcCceEecCCCceECCCCCCc
Confidence 9999999999999999999999999998743 123599999999999999999999999999999
Q ss_pred cceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCc-ccCCCccccccccccccCCcccccCCCCCCCCceEE
Q 008789 391 QDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPF-CLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFE 469 (553)
Q Consensus 391 ~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 469 (553)
+.+.|+..|.++|+||+|||+||.++ .+...|+.+.|.||. .|||++|+... .....|+
T Consensus 226 ~~~~k~~~i~~lP~vL~i~lkRf~~~--~~~~~K~~~~v~fp~~~ldl~~~~~~~------------------~~~~~Y~ 285 (348)
T 3nhe_A 226 KRCIKKFSIQRFPKILVLHLKRFSES--RIRTSKLTTFVNFPLRDLDLREFASEN------------------TNHAVYN 285 (348)
T ss_dssp CCEEEEEEEEECCSEEEEEECCBCCC--SSCCCBCCCCEECCSSCEECGGGBCTT------------------CCCCEEE
T ss_pred ccEEEEEEeecCCceEEEEEEccccc--CCceeecCcceeccCCcCCHhhhcCCC------------------CCCCcEE
Confidence 99999999999999999999999876 567889999999995 79999998642 2456899
Q ss_pred EEEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEEeccccccCCCceEEEEEEecc
Q 008789 470 IFAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKML 526 (553)
Q Consensus 470 L~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~~ 526 (553)
|+|||+|.|+.++|||+||+|. +++||+|||+.|+++++++|...+||||||+|++.
T Consensus 286 L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 286 LYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC-
T ss_pred EEEEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCC
Confidence 9999999999999999999997 78999999999999999999999999999999864
No 5
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=3.4e-66 Score=535.63 Aligned_cols=315 Identities=32% Similarity=0.620 Sum_probs=270.0
Q ss_pred CCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccC-CCCccchHHHHHHHHHHHhcCCCCccChHHH
Q 008789 174 CYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKR-SSDRLCLLCDIYVFFSAVFSGDRTPYSPAQL 252 (553)
Q Consensus 174 ~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 252 (553)
.+.+|++||.|+|||||||||||+|+++|+|+++|+...+........ .....++..++..++..+|.+....++|..|
T Consensus 57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f 136 (396)
T 2gfo_A 57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDF 136 (396)
T ss_dssp CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHH
T ss_pred CCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHH
Confidence 346899999999999999999999999999999998754322111110 1123468889999999999988888999999
Q ss_pred HHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCC----CC-----------------CCccccceeeeeEEE
Q 008789 253 LYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIK----DT-----------------GECHCVAHRVFSGQL 311 (553)
Q Consensus 253 l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~----~~-----------------~~~~~~i~~~F~g~l 311 (553)
+.+++...+.|.+++||||||||.+|||.|+++......... .. ....++|.++|+|++
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l 216 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQF 216 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEE
Confidence 999999999999999999999999999999988644321100 00 012468999999999
Q ss_pred eeEEEeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCccccccccccc
Q 008789 312 RSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQ 391 (553)
Q Consensus 312 ~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~ 391 (553)
.++++|..|++.+.+.++|++|+|+||... ..+|++||+.|+.+|.++++++|.|++|+..+
T Consensus 217 ~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~------------------~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~ 278 (396)
T 2gfo_A 217 KSTVQCLTCHKKSRTFEAFMYLSLPLASTS------------------KCTLQDCLRLFSKEEKLTDNNRFYCSHCRARR 278 (396)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCSCSS------------------EEEHHHHHHHHTSCEEECSTTCEEETTTTEEE
T ss_pred EEEEEeCCCCceecccccceeeeecccccc------------------cCCHHHHHHHhCCcccccCCcccccCCccccc
Confidence 999999999999999999999999998743 35999999999999999999999999999999
Q ss_pred ceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCc-ccCCCccccccccccccCCcccccCCCCCCCCceEEE
Q 008789 392 DSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPF-CLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEI 470 (553)
Q Consensus 392 ~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L 470 (553)
.++|+..|.++|+||+|||+||.++. ....|+++.|.||. .|||++|+..+ ......|+|
T Consensus 279 ~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~-----------------~~~~~~Y~L 339 (396)
T 2gfo_A 279 DSLKKIEIWKLPPVLLVHLKRFSYDG--RWKQKLQTSVDFPLENLDLSQYVIGP-----------------KNNLKKYNL 339 (396)
T ss_dssp CEEEEEEEEECCSEEEEEECCEEECS--SSEEECCCEEECCSSCBCCGGGBCSC-----------------CSSCCCBEE
T ss_pred ceEEEEEEecCCcEEEEEecceeccC--ccceecCceEecchhhccccccccCC-----------------CCCCceEEE
Confidence 99999999999999999999999873 34689999999995 79999998642 123468999
Q ss_pred EEEEEeeccCCCCCeEEEEec--CCcEEEEcCcceEEeccccccCCCceEEEEEEec
Q 008789 471 FAVVTHSGTLDSGHYVTYLHL--KDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKM 525 (553)
Q Consensus 471 ~avV~H~G~~~~GHY~a~vr~--~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~ 525 (553)
+|||+|.|++++|||+||+|. +++||+|||+.|+++++++|...+||||||+|++
T Consensus 340 ~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 340 FSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred EEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 999999999999999999997 4899999999999999999999999999999864
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=7.7e-65 Score=520.13 Aligned_cols=313 Identities=29% Similarity=0.524 Sum_probs=262.9
Q ss_pred cccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCC-CccChHHHHHHH
Q 008789 178 GLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDR-TPYSPAQLLYSW 256 (553)
Q Consensus 178 g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~i~p~~~l~~l 256 (553)
|++||.|+|||||||||||+|+++|+||++++.......... .....++..+|..+|..+|.+.. ..++|..|+.++
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l 79 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG--GGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVF 79 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC--CCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 899999999999999999999999999999987543222111 12245799999999999998764 689999999999
Q ss_pred HhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCC---C---------------------------------CCcc
Q 008789 257 WQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKD---T---------------------------------GECH 300 (553)
Q Consensus 257 ~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~---~---------------------------------~~~~ 300 (553)
+...+.|.+++||||+|||.+||+.||++.......... . ....
T Consensus 80 ~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T 3i3t_A 80 QKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED 159 (355)
T ss_dssp HHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCC
T ss_pred HHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999885432211000 0 0123
Q ss_pred ccceeeeeEEEeeEEEeCCCCCccccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCC
Q 008789 301 CVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQ 380 (553)
Q Consensus 301 ~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~ 380 (553)
++|.++|+|++.+.++|..|++.+.+.++|++|+|++|... ......+|++||+.|+..|.+++++
T Consensus 160 s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~--------------~~~~~~sl~~~L~~~~~~e~l~~~n 225 (355)
T 3i3t_A 160 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKG--------------FAGGKVSLRDCFNLFTKEEELESEN 225 (355)
T ss_dssp SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC---------------------CBHHHHHHHHHCCEEECGGG
T ss_pred CcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccc--------------cccCccCHHHHHHHhCCccccCCCC
Confidence 56899999999999999999999999999999999998742 0113459999999999999999999
Q ss_pred cccccccccccceeEEEEeecCCceEEEEEeeeeecCCcccccccccccccCc-ccCCCccccccccccccCCcccccCC
Q 008789 381 KFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPF-CLDMNPYLSSSVVRNRFGNRMFAFEG 459 (553)
Q Consensus 381 ~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~ 459 (553)
+|.|++|++++.++|+..|.++|+||+|||+||.++ .+...|+++.|.||. .|||.+|+...
T Consensus 226 ~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~--~~~~~K~~~~v~fp~~~l~l~~~~~~~--------------- 288 (355)
T 3i3t_A 226 APVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSAS--RGSIKKSSVGVDFPLQRLSLGDFASDK--------------- 288 (355)
T ss_dssp CCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECC--SSCCEECCCCCBCCSSCEECGGGBC-----------------
T ss_pred CeeCCCCCCccceEEEEEcccCChheEEEhhheecC--CCCceECCcceeCCccccCchhhccCC---------------
Confidence 999999999999999999999999999999999987 567789999999995 69999998642
Q ss_pred CCCCCCceEEEEEEEEeeccCCCCCeEEEEecCCcEEEEcCcceEEeccccccCCCceEEEEEEecc
Q 008789 460 DELDTSTEFEIFAVVTHSGTLDSGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQKML 526 (553)
Q Consensus 460 ~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~~~ 526 (553)
.....|+|+|||+|.|++++|||+||+|.+++||+|||+.|+++++++|...+||||||+|.+.
T Consensus 289 ---~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 289 ---AGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQE 352 (355)
T ss_dssp -----CCEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC--
T ss_pred ---CCCcceEEEEEEEecCCCCCCeEEEEEEcCCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccC
Confidence 2356899999999999999999999999999999999999999999999999999999999753
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.4e-63 Score=508.84 Aligned_cols=297 Identities=25% Similarity=0.425 Sum_probs=254.3
Q ss_pred CCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHH
Q 008789 176 PLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYS 255 (553)
Q Consensus 176 ~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 255 (553)
.+|++||.|+|||||||||||+|+++|+||++++...... .....++.++|..+|..|+.+. .+++|..|+..
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 75 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------CcccccHHHHHHHHHHHHhhcC-CCCCCHHHHhh
Confidence 4789999999999999999999999999999997643211 1234578999999999999765 47899999988
Q ss_pred HHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCceeeec
Q 008789 256 WWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMDISL 335 (553)
Q Consensus 256 l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~LsL 335 (553)
+. .+.|.++.||||||||.+||+.|+++..... ..++|.++|+|++.++++|..|++.+.+.++|++|+|
T Consensus 76 ~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~--------~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL 145 (353)
T 1nb8_A 76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC--------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQL 145 (353)
T ss_dssp HT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTST--------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEE
T ss_pred cC--CCCCCcccchhHHHHHHHHHHHHHHHhcCCC--------ccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEE
Confidence 74 3679999999999999999999998764321 1258999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEeeeee
Q 008789 336 NLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKRFEH 415 (553)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRf~~ 415 (553)
+||... +|.++|+.|+.+|.+++++.|.|+.|+ .+.++|+..|.++|+||+|||+||.+
T Consensus 146 ~i~~~~--------------------~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~ 204 (353)
T 1nb8_A 146 SIKGKK--------------------NIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMY 204 (353)
T ss_dssp CCTTCS--------------------BHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC-
T ss_pred EECCCc--------------------chHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEE
Confidence 998654 899999999999999999999999996 56789999999999999999999999
Q ss_pred cCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec--CC
Q 008789 416 FPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL--KD 493 (553)
Q Consensus 416 ~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~--~~ 493 (553)
+...+...|+++.|.||+.|||++|+... .......|+|+|||+|.|.+++|||+||+|. ++
T Consensus 205 ~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~----------------~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~ 268 (353)
T 1nb8_A 205 DPQTDQNIKINDRFEFPEQLPLDEFLQKT----------------DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDG 268 (353)
T ss_dssp -------CCCCCCCBCCSEEECGGGBSSC----------------CTTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSS
T ss_pred ecccCceEecCcEEECCCeeehhhhhccc----------------CCCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCC
Confidence 86456678999999999999999998743 1234578999999999999999999999985 78
Q ss_pred cEEEEcCcceEEeccccccC---------------CCceEEEEEEecc
Q 008789 494 QWYKCDDAWITAVEEEVVRA---------------SQCYMLFYAQKML 526 (553)
Q Consensus 494 ~W~~~nD~~V~~v~~~~v~~---------------~~aYlLfY~r~~~ 526 (553)
+||+|||+.|+++++++|.. .+||||||+|++.
T Consensus 269 ~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 269 KWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp CCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred CEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECch
Confidence 99999999999999988863 5799999999875
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2.2e-62 Score=510.57 Aligned_cols=328 Identities=20% Similarity=0.297 Sum_probs=262.1
Q ss_pred CCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHH
Q 008789 176 PLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYS 255 (553)
Q Consensus 176 ~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~ 255 (553)
..+++||.|+|||||||||||+|+++|+||++++......... ....+..+++++|..||..|+.+. .+++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRAS-GEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccC-CCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence 4567899999999999999999999999999998765431111 111235689999999999999865 78999999999
Q ss_pred HHhccCCCC------CCCcCCHHHHHHHHHHHHHhcCCCCCCCCCC-----------CCCccccceeeeeEEEeeEEEeC
Q 008789 256 WWQHSANLA------SYEQQDAHEFFISMLDGIHENGVKARSPIKD-----------TGECHCVAHRVFSGQLRSDVTCM 318 (553)
Q Consensus 256 l~~~~~~f~------~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~-----------~~~~~~~i~~~F~g~l~~~i~C~ 318 (553)
++...+.|. ++.||||||||.+||+.|+++.......... .....++|+++|+|++.++++|.
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~ 168 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCT 168 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEES
T ss_pred HHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEec
Confidence 999988887 5899999999999999999887543211100 01234689999999999999999
Q ss_pred CCCCcc--ccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEE
Q 008789 319 SCGYTS--TTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQ 396 (553)
Q Consensus 319 ~C~~~s--~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~ 396 (553)
.|++.+ .+.++|++|+|+|+... .+|++||+.|+. |.+. +.|++|++.+.++|+
T Consensus 169 ~C~~~s~s~~~e~f~~Lsl~i~~~~-------------------~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~ 224 (404)
T 2ayn_A 169 ESEEEEVTKGKENQLQLSCFINQEV-------------------KYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKS 224 (404)
T ss_dssp SSCCCCCBCCEEEESSEEEECSSSC-------------------CBHHHHHHHTTE-ECCC----CEETTTTEECCEEEE
T ss_pred CCCCccCceeeccCceEEeecCCCc-------------------ccHHHHHHHhcc-ccee----ecchhhCCccceeee
Confidence 999995 79999999999998642 389999999986 4443 789999999999999
Q ss_pred EEeecCCceEEEEEeeeeecCCcccccccccccccCcccCCCccccccccccccC------Cccc---c-----------
Q 008789 397 MSIKRLPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFG------NRMF---A----------- 456 (553)
Q Consensus 397 ~~i~~lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~------~~~~---~----------- 456 (553)
.+|.++|+||+|||+||.++...+...|+++.|.||..|||.+|+..+....... .... .
T Consensus 225 ~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (404)
T 2ayn_A 225 SKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSS 304 (404)
T ss_dssp EEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC---------------
T ss_pred eeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhcccccc
Confidence 9999999999999999999865566799999999999999999998653210000 0000 0
Q ss_pred ------------cCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEec-CCcEEEEcCcceEEeccccccCCC-------
Q 008789 457 ------------FEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHL-KDQWYKCDDAWITAVEEEVVRASQ------- 515 (553)
Q Consensus 457 ------------~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~-~~~W~~~nD~~V~~v~~~~v~~~~------- 515 (553)
...........|+|+|||+|.|. +++|||+||+|. +++||+|||+.|+++++++|....
T Consensus 305 ~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~ 384 (404)
T 2ayn_A 305 PQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHI 384 (404)
T ss_dssp -------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCE
T ss_pred ccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCce
Confidence 00011234689999999999996 999999999998 999999999999999999998766
Q ss_pred ceEEEEEEeccccc
Q 008789 516 CYMLFYAQKMLYYK 529 (553)
Q Consensus 516 aYlLfY~r~~~~~~ 529 (553)
||||||+|++....
T Consensus 385 aYiLfY~r~~~~~~ 398 (404)
T 2ayn_A 385 AYVLLYGPRRVEIM 398 (404)
T ss_dssp EEEEEEECC-----
T ss_pred EEEEEEEecCCCCC
Confidence 99999999987544
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=5.9e-61 Score=501.02 Aligned_cols=314 Identities=20% Similarity=0.291 Sum_probs=253.7
Q ss_pred CCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCC----CccchHHHHHHHHHHHhcCCCCccChH
Q 008789 175 YPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSS----DRLCLLCDIYVFFSAVFSGDRTPYSPA 250 (553)
Q Consensus 175 ~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~l~~~~~~~i~p~ 250 (553)
...+++||.|+|||||||||||+|+++|+||++++........ ..... ...+++++|..||..|+.+...+++|.
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~ 98 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGV-SNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 98 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCC-SCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-CCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence 3457899999999999999999999999999999875433211 10000 145899999999999999887899999
Q ss_pred HHHHHHHhccCCCC-------CCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCc
Q 008789 251 QLLYSWWQHSANLA-------SYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYT 323 (553)
Q Consensus 251 ~~l~~l~~~~~~f~-------~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~ 323 (553)
.|+..++...+.|. ++.||||+|||.+||+.|+++... ++|.++|+ ++.++++|..|++.
T Consensus 99 ~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------------~~i~~~F~-~~~~~~~C~~C~~~ 165 (415)
T 1vjv_A 99 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------------KFSEDFRI-QFKTTIKDTANDND 165 (415)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH------------HHHTTTCE-EEEEEEEETTEEEE
T ss_pred HHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc------------chHHHHHH-hheEEEEECCCCCC
Confidence 99999999999998 899999999999999999987642 47889999 99999999999998
Q ss_pred c--ccccCceeeeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeec
Q 008789 324 S--TTYDPFMDISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKR 401 (553)
Q Consensus 324 s--~~~e~f~~LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~ 401 (553)
+ .+.++|++|+|+|+... .+|++||+.|+.. .+. +.|++|++.+.++|+.+|.+
T Consensus 166 s~s~~~e~f~~Lsl~i~~~~-------------------~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~ 221 (415)
T 1vjv_A 166 ITVKENESDSKLQCHISGTT-------------------NFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISR 221 (415)
T ss_dssp EEEECCCEESCEEECCCTTC-------------------CBHHHHHHHHHEE-C-------------CCCCEEEEEEEEE
T ss_pred ccccccccceeeeecccccc-------------------chHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEccc
Confidence 6 59999999999998642 3899999999874 343 78999999999999999999
Q ss_pred CCceEEEEEeeeeecCCcccccccccccccCcccCCCcccccccccc-------------------------ccC---Cc
Q 008789 402 LPLVLCLHIKRFEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRN-------------------------RFG---NR 453 (553)
Q Consensus 402 lP~vL~i~LkRf~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~-------------------------~~~---~~ 453 (553)
+|+||+|||+||.++...+...|+++.|.||..|||.+|+..+.... +.. ..
T Consensus 222 lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~ 301 (415)
T 1vjv_A 222 LPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSE 301 (415)
T ss_dssp CBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred CCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccc
Confidence 99999999999999865566799999999999999999998642100 000 00
Q ss_pred c--c---------------------------c-cCCCCCCCCceEEEEEEEEeecc-CCCCCeEEEEec---CCcEEEEc
Q 008789 454 M--F---------------------------A-FEGDELDTSTEFEIFAVVTHSGT-LDSGHYVTYLHL---KDQWYKCD 499 (553)
Q Consensus 454 ~--~---------------------------~-~~~~~~~~~~~Y~L~avV~H~G~-~~~GHY~a~vr~---~~~W~~~n 499 (553)
. . + ...........|+|+|||+|.|. +++|||+||+|. +++||+||
T Consensus 302 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fn 381 (415)
T 1vjv_A 302 NVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFN 381 (415)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEE
T ss_pred cccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeE
Confidence 0 0 0 00112245688999999999995 999999999998 89999999
Q ss_pred CcceEEeccccccCCC-------ceEEEEEEecc
Q 008789 500 DAWITAVEEEVVRASQ-------CYMLFYAQKML 526 (553)
Q Consensus 500 D~~V~~v~~~~v~~~~-------aYlLfY~r~~~ 526 (553)
|+.|+++++++|.... ||||||+|+++
T Consensus 382 D~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~l 415 (415)
T 1vjv_A 382 DDKVSVVEKEKIESLAGGGESDSALILMYKGFGL 415 (415)
T ss_dssp TTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred CCcCeEcCHHHHhhhcCCCCcceEEEEEEEecCC
Confidence 9999999999998765 99999999864
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3e-60 Score=508.48 Aligned_cols=301 Identities=25% Similarity=0.416 Sum_probs=259.9
Q ss_pred cCCCCcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHH
Q 008789 173 SCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQL 252 (553)
Q Consensus 173 ~~~~~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~ 252 (553)
+...+|++||.|+||||||||+||+|+++|+||++++...... .....++.++|..+|..|+.+. .+++|..|
T Consensus 169 ~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l 241 (522)
T 2f1z_A 169 SKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKL 241 (522)
T ss_dssp TTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTH
T ss_pred ccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC------CcccchHHHHHHHHHHHHhcCC-CccCcHHH
Confidence 3457899999999999999999999999999999987643211 1224568899999999999765 57899999
Q ss_pred HHHHHhccCCCCCCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCcee
Q 008789 253 LYSWWQHSANLASYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMD 332 (553)
Q Consensus 253 l~~l~~~~~~f~~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~ 332 (553)
+..+. .+.|.++.||||+|||.+||+.|+++..... ..++|.++|+|++.+.++|..|++.+.+.++|++
T Consensus 242 ~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~--------~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~ 311 (522)
T 2f1z_A 242 TKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC--------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYD 311 (522)
T ss_dssp HHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTST--------TTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESC
T ss_pred HhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCCc--------cccchhhheeEEEEEEEEcCCCCceeeeeeeeEE
Confidence 88763 3679999999999999999999998764321 1258999999999999999999999999999999
Q ss_pred eeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEee
Q 008789 333 ISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKR 412 (553)
Q Consensus 333 LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkR 412 (553)
|+|+||... +|.+||+.|+..|.++++++|.|+.|+ .+.|+|+..|.++|+||+|||+|
T Consensus 312 LsL~i~~~~--------------------~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkR 370 (522)
T 2f1z_A 312 IQLSIKGKK--------------------NIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMR 370 (522)
T ss_dssp EEECCTTCC--------------------BHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECC
T ss_pred EEEEeCCcc--------------------cchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEe
Confidence 999998654 899999999999999999999999996 57789999999999999999999
Q ss_pred eeecCCcccccccccccccCcccCCCccccccccccccCCcccccCCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec-
Q 008789 413 FEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRFGNRMFAFEGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL- 491 (553)
Q Consensus 413 f~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~- 491 (553)
|.++...+...|+++.|.||..|||++|+... .......|+|+|||+|.|.+++|||+||+|.
T Consensus 371 F~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~----------------~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~ 434 (522)
T 2f1z_A 371 FMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT----------------DPKDPANYILHAVLVHSGDNHGGHYVVYLNPK 434 (522)
T ss_dssp EEECSSSSCEEECCCCCBCCSEEECGGGBSSC----------------CTTSCCEEEEEEEEEEECSSSCSEEEEEECTT
T ss_pred EEEcccCCcceEcCcEEeCCCeecchhhhccc----------------cCCCCcEEEEEEEEEecccCCCceEEEEEecC
Confidence 99986556778999999999999999998642 1234578999999999999999999999985
Q ss_pred -CCcEEEEcCcceEEeccccccC---------------CCceEEEEEEeccc
Q 008789 492 -KDQWYKCDDAWITAVEEEVVRA---------------SQCYMLFYAQKMLY 527 (553)
Q Consensus 492 -~~~W~~~nD~~V~~v~~~~v~~---------------~~aYlLfY~r~~~~ 527 (553)
+++||+|||+.|+++++++|+. .+||||||+|++..
T Consensus 435 ~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 435 GDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 486 (522)
T ss_dssp SSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSH
T ss_pred CCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCch
Confidence 7899999999999999988863 57999999998753
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.97 E-value=9.6e-32 Score=262.80 Aligned_cols=240 Identities=15% Similarity=0.208 Sum_probs=156.7
Q ss_pred ccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHH-HHHHHHHhcCCCCccChHHHHHHHH
Q 008789 179 LRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDI-YVFFSAVFSGDRTPYSPAQLLYSWW 257 (553)
Q Consensus 179 ~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~i~p~~~l~~l~ 257 (553)
..||.|+||||||||.||+|+++|++++.++........ ......+...| ..+|..|.. .++.|..|+..++
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~----~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~LR 81 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND----VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKLR 81 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS----CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc----chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHH
Confidence 469999999999999999999999999999876422211 11223577788 788998876 6899999999998
Q ss_pred hccCCCC-----CCCcCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCccccccCcee
Q 008789 258 QHSANLA-----SYEQQDAHEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTTYDPFMD 332 (553)
Q Consensus 258 ~~~~~f~-----~~~QqDA~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~~e~f~~ 332 (553)
+..|+|+ +++||||.|||..||..|.......+..........+.+.++|.
T Consensus 82 ~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~------------------------ 137 (374)
T 2vhf_A 82 KILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM------------------------ 137 (374)
T ss_dssp HHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC------------------------
T ss_pred HHhHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc------------------------
Confidence 8877664 37999999999999999976422111000000011134444443
Q ss_pred eeccCCCCCCCCcccccCCCCCCCCCCccCHHHHHHhccCCcccCCCCcccccccccccceeEEEEeecCCceEEEEEee
Q 008789 333 ISLNLDTGNCPSTDLANKSLKPSDNTYVSTLLGCLDLFTKPEKLGSDQKFFCENCQERQDSVKQMSIKRLPLVLCLHIKR 412 (553)
Q Consensus 333 LsL~i~~~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkR 412 (553)
+-+... ...+.+++++.-+-.+ .. .|+++|+||+||+.|
T Consensus 138 ---E~~e~~-----------------~~e~~~qL~e~nfl~~------------------gi---kisrLP~yLtVq~vR 176 (374)
T 2vhf_A 138 ---EKNEKV-----------------GVPTIQQLLEWSFINS------------------NL---KFAEAPSCLIIQMPR 176 (374)
T ss_dssp ---CCC--C-----------------CCCBHHHHHHHHHHHH------------------TE---EESSCCSEEEEECCC
T ss_pred ---Cccccc-----------------CCcHHHHhhhHHHHHc------------------CC---eeecCCcceEEeeec
Confidence 000000 0124555432211111 11 399999999999999
Q ss_pred eeecCCcccccccccccccCcccCCCcccccccccccc------------------CC-c-c-c----------------
Q 008789 413 FEHFPVRRMSRKIDRYMQFPFCLDMNPYLSSSVVRNRF------------------GN-R-M-F---------------- 455 (553)
Q Consensus 413 f~~~~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~------------------~~-~-~-~---------------- 455 (553)
| +...||-+.|.||.+||+.++++.+...-.. .. . . .
T Consensus 177 F------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (374)
T 2vhf_A 177 F------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLN 250 (374)
T ss_dssp C------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTT
T ss_pred c------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhc
Confidence 9 2357999999999999999999876421000 00 0 0 0
Q ss_pred ----cc----------CCCCCCCCceEEEEEEEEeeccCCCCCeEEEEec---CCcEEEEcC
Q 008789 456 ----AF----------EGDELDTSTEFEIFAVVTHSGTLDSGHYVTYLHL---KDQWYKCDD 500 (553)
Q Consensus 456 ----~~----------~~~~~~~~~~Y~L~avV~H~G~~~~GHY~a~vr~---~~~W~~~nD 500 (553)
.. .+........|+|+|||+ +++|||+||||. +++|+.||-
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 251 HKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp CCCEECCC----------------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred ccccccccCccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 00 011122346899999999 899999999997 689999974
No 12
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.85 E-value=6.1e-22 Score=161.44 Aligned_cols=77 Identities=19% Similarity=0.445 Sum_probs=71.9
Q ss_pred CCCCccCCCCCCeEEecccCCcccc----hhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeCCChhhHHHHhhhhccC
Q 008789 54 PRCCFCNGYQKRLYLCLICSSISCS----SHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDPDFDKIVMLKHLMDLP 129 (553)
Q Consensus 54 ~~c~~C~~~~~~~~~Cl~Cg~~~c~----~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~~~~~~~~~~~~~~~~ 129 (553)
..|+.|.. ..++|+||+||++||| +||+.|++ +++|+|+|++++++||||+|+++|+++.++++++..++..||
T Consensus 25 ~~C~~C~~-~~~~W~CL~CG~vgCgr~~~~HA~~H~~-~t~H~~~~~l~~~~vwCy~cd~~V~~~~L~d~~~~~hl~~fg 102 (109)
T 3c5k_A 25 QPCGDCGT-IQENWVCLSCYQVYCGRYINGHMLQHHG-NSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNIAHQNKFG 102 (109)
T ss_dssp CCCTTTCC-CSSEEEETTTCCEEECTTTTCHHHHHHH-HHCCCEEEETTTCCEEETTTTEEBCCGGGHHHHHHHHHHHHC
T ss_pred CcCccccC-CCCeeeeeecCccccCCCcChHHHHHhc-ccCCCEEEECCCCCEEECCCCCEEecccccChHHHHHHHHhC
Confidence 46999985 5799999999999997 99999999 799999999999999999999999999999999999999998
Q ss_pred CCC
Q 008789 130 RSG 132 (553)
Q Consensus 130 ~~~ 132 (553)
++.
T Consensus 103 ~~~ 105 (109)
T 3c5k_A 103 EDM 105 (109)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 13
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.78 E-value=1e-19 Score=152.65 Aligned_cols=75 Identities=28% Similarity=0.433 Sum_probs=66.6
Q ss_pred CCCCCccCCCCCCeEEecccCCcccc----------hhHHhhhcCCCCCeEEEECCC-----CcEEEcCCCCEEeCCChh
Q 008789 53 IPRCCFCNGYQKRLYLCLICSSISCS----------SHTLLHSQCENGHDIAVDIER-----SELYCVLCCDQVYDPDFD 117 (553)
Q Consensus 53 ~~~c~~C~~~~~~~~~Cl~Cg~~~c~----------~h~~~H~~~~~~H~~~~~~~~-----~~~~c~~c~~~v~d~~~~ 117 (553)
.+.|..|.. ..++|+||+||++||| +||+.|++ +++|+|+|++.+ ++||||+||++|+|+.
T Consensus 34 ~~~C~~C~~-~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~-~t~H~l~v~l~t~~~~~~~vwcY~cd~~V~dp~-- 109 (129)
T 2g45_A 34 GWKCSKCDM-RENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYR-ETGYPLAVKLGTITPDGADVYSYDEDDMVLDPS-- 109 (129)
T ss_dssp BCCCSSSSC-CSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHH-HHCCCEEEETTCCBTTBCCEEETTTTEEEECTT--
T ss_pred CCcCccccC-cCceEEeccCCccccCccccCCCCcCcHHHHHhh-hcCCCEEEECCCCCCCCCeEEECCCCCEeECcc--
Confidence 457999985 5799999999999994 89999999 799999999999 7999999999999999
Q ss_pred hHHHHhhhhccCCCCCC
Q 008789 118 KIVMLKHLMDLPRSGNG 134 (553)
Q Consensus 118 ~~~~~~~~~~~~~~~~~ 134 (553)
+..++.+|+++...
T Consensus 110 ---L~~hl~~fgi~~~~ 123 (129)
T 2g45_A 110 ---LAEHLSHFGIDMLK 123 (129)
T ss_dssp ---HHHHHHTTTCCTTT
T ss_pred ---HHHHHHHHCCChhh
Confidence 45788999887753
No 14
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.77 E-value=1.6e-19 Score=144.61 Aligned_cols=62 Identities=31% Similarity=0.703 Sum_probs=56.5
Q ss_pred CCCCccCCCCCCeEEecc--cCCcccc----hhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEE-eCCCh
Q 008789 54 PRCCFCNGYQKRLYLCLI--CSSISCS----SHTLLHSQCENGHDIAVDIERSELYCVLCCDQV-YDPDF 116 (553)
Q Consensus 54 ~~c~~C~~~~~~~~~Cl~--Cg~~~c~----~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v-~d~~~ 116 (553)
..|..|.....++|+||+ ||++||| +||+.|++ +++|+|+|++++++||||+|+++| .|+.|
T Consensus 26 ~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~-~t~H~~~~~l~~~~vwCy~cdd~V~~d~~L 94 (97)
T 2uzg_A 26 GTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQ-ETKHYLTVNLTTLRVWCYACSKEVFLDRKL 94 (97)
T ss_dssp TCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHH-HTTCCEEEETTTTEEEETTTTEEECCCSCC
T ss_pred CcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhh-hcCCcEEEECCCCCEEECCCCcEeecCccc
Confidence 479999855789999999 9999996 99999999 799999999999999999999999 47764
No 15
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.71 E-value=7.2e-18 Score=134.05 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=53.9
Q ss_pred CCCCCccCCC---CCCeEEecccCCcccc-----hhHHhhhcCCCCCeEEEECC--CCcEEEcCCCCEEeCCC
Q 008789 53 IPRCCFCNGY---QKRLYLCLICSSISCS-----SHTLLHSQCENGHDIAVDIE--RSELYCVLCCDQVYDPD 115 (553)
Q Consensus 53 ~~~c~~C~~~---~~~~~~Cl~Cg~~~c~-----~h~~~H~~~~~~H~~~~~~~--~~~~~c~~c~~~v~d~~ 115 (553)
...|..|... +.+||+||+||++||+ +||++||+ +++|||+++++ ++++|||.||++|.|++
T Consensus 18 ~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~-~t~Hpl~~S~~~~~~~vwcY~cd~~V~~p~ 89 (102)
T 2ida_A 18 ALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFH-ATGHPIIEGYDPPEGWGWCYVDEVMFDLSD 89 (102)
T ss_dssp SSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHH-HHCCCEEEESSSCSCEEEETTTTEEEECTT
T ss_pred CCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHh-ccCCCEEEEEecCCCCEEEcCCCcEEECcc
Confidence 3579999532 3599999999999997 89999999 79999998885 67899999999998876
No 16
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=137.62 Aligned_cols=56 Identities=21% Similarity=0.581 Sum_probs=51.1
Q ss_pred CCCeEEecccCCcccc-----hhHHhhhcCC---CCCeEEEECCCCcEEEcCCCCEEeCCChhhH
Q 008789 63 QKRLYLCLICSSISCS-----SHTLLHSQCE---NGHDIAVDIERSELYCVLCCDQVYDPDFDKI 119 (553)
Q Consensus 63 ~~~~~~Cl~Cg~~~c~-----~h~~~H~~~~---~~H~~~~~~~~~~~~c~~c~~~v~d~~~~~~ 119 (553)
+.++|+||+||++||| +||..||+ + ++|||+|++++..||||.||+||+|+....+
T Consensus 51 ~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~-~~~~t~H~l~~~l~t~~vwCY~cd~~V~~~~~~~l 114 (126)
T 2i50_A 51 KPSVWLCLKCGHQGCGRNSQEQHALKHYL-TPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQL 114 (126)
T ss_dssp CCCEEEETTTCCEEECTTSSSCHHHHHHH-SCCSSCCCEEEETTTCCEEETTTTEEECCCTTSHH
T ss_pred cccceeeeeCCccccCCCCcchHHHHHHh-CcCCCCCcEEEECCCCeEEeCCCCcEEEcCcchhH
Confidence 6899999999999996 89999998 5 7999999999999999999999998875543
No 17
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.64 E-value=0.00045 Score=62.15 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=48.3
Q ss_pred CcccccccCCCcchhHHHHHHHhcCHhHHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHHHH
Q 008789 177 LGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLYSW 256 (553)
Q Consensus 177 ~g~~GL~NlGNtCY~NsvLQ~L~~~p~f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~~l 256 (553)
.|++=|.=.-|+||+||++-+|-..... ++.++.++..+ +|..|+..+
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~---------------------------~~~aw~~f~~G-----d~~~fV~~~ 58 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFF---------------------------NNEAWEKFKKG-----DVMDFVNLC 58 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTC---------------------------CCHHHHHHTTT-----CCHHHHHHH
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChh---------------------------HHHHHHHHhCC-----ChHHHHHHH
Confidence 3556677778999999999887554432 23445555555 466777666
Q ss_pred HhccCCCCCCCcCCHHHHHHHHH
Q 008789 257 WQHSANLASYEQQDAHEFFISML 279 (553)
Q Consensus 257 ~~~~~~f~~~~QqDA~Efl~~lL 279 (553)
-... ....++-.||+++|..|+
T Consensus 59 Ya~~-~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 59 YAAT-TLARGHSGDAEYLLELML 80 (211)
T ss_dssp HHHH-TCCTTSCCCHHHHHHHHH
T ss_pred HHHc-CCCCCCCcCHHHHHHHHH
Confidence 4433 456678899999999998
No 18
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=97.14 E-value=0.0055 Score=58.88 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=51.6
Q ss_pred CCcccccccCCCcchhHHHHHHHhcCHh-HHHHHHcCCCCccccccCCCCccchHHHHHHHHHHHhcCCCCccChHHHHH
Q 008789 176 PLGLRGLNNLGSTCFMNSVLQALLHAPP-FRNYFLTGQRNHEVCRKRSSDRLCLLCDIYVFFSAVFSGDRTPYSPAQLLY 254 (553)
Q Consensus 176 ~~g~~GL~NlGNtCY~NsvLQ~L~~~p~-f~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~l~ 254 (553)
-.|++=|.=.-|+||+||++-+|-+... |+. -.++.++..+..| +|..|..
T Consensus 99 ~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~-----------------------~~l~~aw~~f~~G-----d~~~FVa 150 (315)
T 2fe8_A 99 VGGLTSIKWADNNCYLSSVLLALQQLEVKFNA-----------------------PALQEAYYRARAG-----DAANFCA 150 (315)
T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHTSCCCBSS-----------------------HHHHHHHHHHHHT-----CCHHHHH
T ss_pred ECCEEEEeecCCccHHHHHHHHHHhcCCccCC-----------------------HHHHHHHHHHhCC-----ChHHHHH
Confidence 3566677777899999999977755321 110 1356666666666 5677777
Q ss_pred HHHhccCCCCCCCcCCHHHHHHHHH
Q 008789 255 SWWQHSANLASYEQQDAHEFFISML 279 (553)
Q Consensus 255 ~l~~~~~~f~~~~QqDA~Efl~~lL 279 (553)
.+-... ....++-.||.++|..|+
T Consensus 151 ~~Ya~~-~~~~G~~gDa~~~L~~Ll 174 (315)
T 2fe8_A 151 LILAYS-NKTVGELGDVRETMTHLL 174 (315)
T ss_dssp HHHHHT-TCCTTSCCCHHHHHHHHH
T ss_pred HHHHhc-CCCCCCCccHHHHHHHHH
Confidence 664443 445678899999999884
No 19
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=89.17 E-value=0.38 Score=53.62 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=36.4
Q ss_pred CCCCcc---CCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEEC
Q 008789 54 PRCCFC---NGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDI 97 (553)
Q Consensus 54 ~~c~~C---~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~ 97 (553)
..|..| -.+..-|++||.|-.-+|..|+..|+. .++|++|+++
T Consensus 47 ~eC~~~f~~~~~~~gl~vcl~~f~~~~~~~~~~~~~-~~~~~~~l~i 92 (854)
T 3ihp_A 47 DECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFN-KTGQRVYLHL 92 (854)
T ss_dssp SSCSSSSCCTTSTTCEEEETTTCCEECTTTHHHHHH-HHCCCEEEEE
T ss_pred ccCceecCCCCCCCCeEEcccccccccHHHHHHHHh-ccCCceEEEE
Confidence 357666 224678999999999999999999998 7999999976
No 20
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.47 E-value=0.28 Score=35.22 Aligned_cols=29 Identities=31% Similarity=0.641 Sum_probs=21.6
Q ss_pred CCCCCCccCCCCCCe-----EEecccCCcccchhHH
Q 008789 52 EIPRCCFCNGYQKRL-----YLCLICSSISCSSHTL 82 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~-----~~Cl~Cg~~~c~~h~~ 82 (553)
...+|..|.. ...| +.| .||.+||+.|.+
T Consensus 14 ~~~rC~~C~k-k~gL~~~egf~C-rCg~~FC~~HRy 47 (67)
T 1x4w_A 14 SRRRCFQCQT-KLELVQQELGSC-RCGYVFCMLHRL 47 (67)
T ss_dssp CTTBCSSSCC-BCCHHHHHHHCC-SSSCCCCTTTCS
T ss_pred cCCcchhhCC-eecccccCceEe-cCCCEehhccCC
Confidence 3457999964 3334 689 999999997765
No 21
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=86.42 E-value=0.53 Score=33.39 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=21.3
Q ss_pred CCCCCCccCCC-CCCeEEecccCCcccchhHH
Q 008789 52 EIPRCCFCNGY-QKRLYLCLICSSISCSSHTL 82 (553)
Q Consensus 52 ~~~~c~~C~~~-~~~~~~Cl~Cg~~~c~~h~~ 82 (553)
...+|..|... ..-.+.| .||..||+.|.+
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~ 44 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRY 44 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSSSCS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEecccCCC
Confidence 34579999632 1124899 899999997765
No 22
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=84.75 E-value=0.75 Score=32.59 Aligned_cols=30 Identities=27% Similarity=0.676 Sum_probs=21.2
Q ss_pred CCCCCCccCCC-CCCeEEecccCCcccchhHH
Q 008789 52 EIPRCCFCNGY-QKRLYLCLICSSISCSSHTL 82 (553)
Q Consensus 52 ~~~~c~~C~~~-~~~~~~Cl~Cg~~~c~~h~~ 82 (553)
...+|..|... ..-.+.| .||..||+.|.+
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HRy 44 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGSHRY 44 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTTTCS
T ss_pred cCCcChhhCCccCccCEEe-ecCCEeccccCC
Confidence 34579999632 1224899 799999997765
No 23
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=83.13 E-value=0.55 Score=38.69 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.3
Q ss_pred CCCCeEEEEecCCcEEEEcCcceEEeccc
Q 008789 481 DSGHYVTYLHLKDQWYKCDDAWITAVEEE 509 (553)
Q Consensus 481 ~~GHY~a~vr~~~~W~~~nD~~V~~v~~~ 509 (553)
..+|-+-+.-..+.||.+||+.+.+..+.
T Consensus 117 g~eHAVFa~~TS~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 117 GQEHAVFACVTSNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp TTTEEEEEECCTTSSEEEETTEEEECCCC
T ss_pred CCCceEEEEEccCceEEecccccccCCCC
Confidence 44788888888999999999999987643
No 24
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=79.57 E-value=1 Score=49.82 Aligned_cols=55 Identities=24% Similarity=0.458 Sum_probs=41.8
Q ss_pred CCCCccCCC-CCCeEEecccCCcccc-------hhHHhhhcCCCCC-eEEEEC----CCCcEEEcCCCC
Q 008789 54 PRCCFCNGY-QKRLYLCLICSSISCS-------SHTLLHSQCENGH-DIAVDI----ERSELYCVLCCD 109 (553)
Q Consensus 54 ~~c~~C~~~-~~~~~~Cl~Cg~~~c~-------~h~~~H~~~~~~H-~~~~~~----~~~~~~c~~c~~ 109 (553)
..|.-|+.+ ...+..|++|++-||. +|...|.. .++| -+.+.- +.-.+-||.|+.
T Consensus 12 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~-~~~~~~~~l~~~~~~~~~~~~c~~c~~ 79 (802)
T 2xzl_A 12 NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLV-LSHHNVVSLHPDSDLGDTVLECYNCGR 79 (802)
T ss_dssp CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHH-HHTCCCEEECTTSSSCSCBCCCSSSCC
T ss_pred hhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHH-HccCCeeeccCCCCCCCceeEeecCCC
Confidence 469999654 5789999999999994 89999987 4566 455542 445667999974
No 25
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=79.02 E-value=1.1 Score=32.63 Aligned_cols=32 Identities=28% Similarity=0.635 Sum_probs=22.0
Q ss_pred CCCCCCCCccCCC-CCCeEEecccCCcccchhHH
Q 008789 50 QTEIPRCCFCNGY-QKRLYLCLICSSISCSSHTL 82 (553)
Q Consensus 50 ~~~~~~c~~C~~~-~~~~~~Cl~Cg~~~c~~h~~ 82 (553)
+....+|..|... ..--+.| .||..||+.|.+
T Consensus 22 k~~~~RC~~C~kkvgL~~f~C-rCg~~FCs~HRy 54 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKC-RCGSTFCGTHRY 54 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEEC-TTSCEECTTTCS
T ss_pred cccCccchhhcCcccccceEe-ccCCEeccccCC
Confidence 3344579999532 1124899 899999987765
No 26
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=71.48 E-value=2.8 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=22.1
Q ss_pred CCCCCCCccCCCC--CCeEEecccCCcccchhHHh
Q 008789 51 TEIPRCCFCNGYQ--KRLYLCLICSSISCSSHTLL 83 (553)
Q Consensus 51 ~~~~~c~~C~~~~--~~~~~Cl~Cg~~~c~~h~~~ 83 (553)
....+|..|.... ...+.| .||..||+.|.+.
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~HRy~ 56 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFEC-RCGNNFCASHRYA 56 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEEC-TTCCEECTTTCST
T ss_pred ccCccchhhCCeecccCCeEc-CCCCEecccCCCc
Confidence 3345799995321 136899 5999999977653
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=59.25 E-value=2.8 Score=32.82 Aligned_cols=46 Identities=26% Similarity=0.487 Sum_probs=34.3
Q ss_pred CCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEe
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVY 112 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~ 112 (553)
.|..|.....+...|+.|||.||..-...+.. ..+ ..|-.|...+.
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~-~~~-----------~~CP~Cr~~~~ 69 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKLCCFSCIRRWLT-EQR-----------AQCPHCRAPLQ 69 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH-HTC-----------SBCTTTCCBCC
T ss_pred CCccCCccccCccccCCCCChhhHHHHHHHHH-HCc-----------CCCCCCCCcCC
Confidence 59999655677888899999999977776665 221 46888887664
No 28
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=58.48 E-value=4.4 Score=29.54 Aligned_cols=30 Identities=23% Similarity=0.610 Sum_probs=21.3
Q ss_pred CCCCCCccCCC-CCCeEEecccCCcccchhHH
Q 008789 52 EIPRCCFCNGY-QKRLYLCLICSSISCSSHTL 82 (553)
Q Consensus 52 ~~~~c~~C~~~-~~~~~~Cl~Cg~~~c~~h~~ 82 (553)
...+|..|... ..-.+-|- ||.+||+.|.+
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy 54 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRY 54 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCC
Confidence 34579999632 12248899 99999997765
No 29
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=56.36 E-value=5.5 Score=43.97 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=40.6
Q ss_pred CCCCccCCC-CCCeEEecccCCcccc-------hhHHhhhcCCCCC-eEEEEC----CCCcEEEcCCCC
Q 008789 54 PRCCFCNGY-QKRLYLCLICSSISCS-------SHTLLHSQCENGH-DIAVDI----ERSELYCVLCCD 109 (553)
Q Consensus 54 ~~c~~C~~~-~~~~~~Cl~Cg~~~c~-------~h~~~H~~~~~~H-~~~~~~----~~~~~~c~~c~~ 109 (553)
..|.-|+.+ +..+-.|+.|++-||. +|...|.. .++| -+.+.- +.-.+=||.|+.
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~-~~~~~~~~~~~~~~~~~~~~ec~~c~~ 74 (800)
T 2wjy_A 7 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLV-RAKCKEVTLHKDGPLGETVLECYNCGC 74 (800)
T ss_dssp TSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHH-HHTCCCEEECTTSTTCSCBCCCTTTCC
T ss_pred hhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHH-HccCceEecCCCCCCCCceEEEeccCC
Confidence 469999643 4689999999999994 89999987 4556 454443 334666999973
No 30
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=55.07 E-value=5.2 Score=22.58 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=12.5
Q ss_pred EEEEecCCcEEEEcC
Q 008789 486 VTYLHLKDQWYKCDD 500 (553)
Q Consensus 486 ~a~vr~~~~W~~~nD 500 (553)
.+|||.+|.|+..++
T Consensus 11 ~~Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 11 QAYVRKFGEWVLLST 25 (27)
T ss_dssp CEEEEETTEEEEGGG
T ss_pred ceeEEEcCeEEEccc
Confidence 478999999998765
No 31
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=51.35 E-value=15 Score=32.40 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=38.7
Q ss_pred EEEEEEeeccCCCCCeEEEEecCCcEEEEcCcceEEeccccc--------cCCCceEEEEEEecc
Q 008789 470 IFAVVTHSGTLDSGHYVTYLHLKDQWYKCDDAWITAVEEEVV--------RASQCYMLFYAQKML 526 (553)
Q Consensus 470 L~avV~H~G~~~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v--------~~~~aYlLfY~r~~~ 526 (553)
..|+|++.. -||+|..|.++.||-+|=..-.+.-..+. +..+.|=+|=.+.++
T Consensus 110 ~~~FI~N~~----~HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~l 170 (191)
T 3o65_A 110 ERSFICNYK----QHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDL 170 (191)
T ss_dssp CCEEEEEES----SCEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESCC
T ss_pred hhhhhhccc----cceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 357888874 49999999999999999765444322221 236899999988765
No 32
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.21 E-value=16 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCCCCc--cCCCCCCeEEecccCCcccchhHH
Q 008789 53 IPRCCF--CNGYQKRLYLCLICSSISCSSHTL 82 (553)
Q Consensus 53 ~~~c~~--C~~~~~~~~~Cl~Cg~~~c~~h~~ 82 (553)
..+|.. |.....-.+.|-.|+..||..|.+
T Consensus 12 ~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 12 TNKCERAGCRQREMMKLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCCCCSTTCCCCCSSCCBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCCCCCccceECCCCCcccCcccCC
Confidence 346877 864334457899999999987765
No 33
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=44.57 E-value=96 Score=24.34 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=42.5
Q ss_pred CceEEEEEEEEee---cc-C------CCCCeEEEEecCCcEEEEcCcceEEeccccccCCCceEEEEEEe
Q 008789 465 STEFEIFAVVTHS---GT-L------DSGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQK 524 (553)
Q Consensus 465 ~~~Y~L~avV~H~---G~-~------~~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~ 524 (553)
+...++...|.|- |. . --.||+..+. ..+||..|-.++.....+.++|+-|+-+-
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~-----~~~ng~~v~~~~~~~~iS~nP~~~F~~~~ 80 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVE-----VYFEGEKVAEARPGPSTSANPLYAFKFKA 80 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE-----EEETTEEEEEECCCSSCCSSCEEEEEEEC
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEE-----EEECCEEEEEEEeCCccccCCeEEEEEec
Confidence 4467788889993 21 1 1168888876 34899999999999999999999999774
No 34
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=42.70 E-value=80 Score=24.86 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=42.4
Q ss_pred CceEEEEEEEEee---cc-CC------CCCeEEEEecCCcEEEEcCcceEEeccccccCCCceEEEEEEe
Q 008789 465 STEFEIFAVVTHS---GT-LD------SGHYVTYLHLKDQWYKCDDAWITAVEEEVVRASQCYMLFYAQK 524 (553)
Q Consensus 465 ~~~Y~L~avV~H~---G~-~~------~GHY~a~vr~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~ 524 (553)
....++...|.|- |. .+ -.||+..+. ..+||..|-.++.....+.++|+-|+-+-
T Consensus 17 g~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~-----~~~ng~~v~~~~~~~~iS~NP~~~F~~~~ 81 (108)
T 2oxg_Z 17 GETVTVKALISHKMESGQRKDADGKLIPRSIINRFT-----CELNGVNVVDVAIDPAVSTNPYFEFDAKV 81 (108)
T ss_dssp TEEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE-----EEETTEEEEEEEECTTBCSSCEEEEEEEE
T ss_pred CCCEEEEEEeECCCccccccCcCCCccchHheEEEE-----EEECCEEEEEEEeCCccccCCeEEEEEec
Confidence 3456788889993 32 11 168888876 44899999999999989999999999774
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.49 E-value=24 Score=23.69 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=21.5
Q ss_pred CCCCCCccCCCCCCeEEecccCCcccchhHHhhh
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSISCSSHTLLHS 85 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~ 85 (553)
+...|..|.....+. +-+.|||++|..-...+.
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP-VIIECGHNFCKACITRWW 46 (58)
T ss_dssp CCCBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHT
T ss_pred cCCCCccCCcccCcc-EeCCCCCccCHHHHHHHH
Confidence 345699994333333 337899999986666554
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.36 E-value=33 Score=25.05 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=34.6
Q ss_pred CCCCCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeC
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYD 113 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d 113 (553)
+...|..|.....+..+ +.|||.+|..-...+... .. .......|-.|...+..
T Consensus 18 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-~~------~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVS-ADCNHSFCRACITLNYES-NR------NTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHH-SB------CTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHh-cc------CCCCCCCCCCCCCcCCH
Confidence 34479999543344443 789999998666666542 11 13346778889877653
No 37
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=37.02 E-value=18 Score=27.91 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=25.5
Q ss_pred CCCccCC--CCCCeEEecccCCcccchhHHh-hh
Q 008789 55 RCCFCNG--YQKRLYLCLICSSISCSSHTLL-HS 85 (553)
Q Consensus 55 ~c~~C~~--~~~~~~~Cl~Cg~~~c~~h~~~-H~ 85 (553)
.|..|.. ....+..|+.|++.+|..|... |.
T Consensus 5 ~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 5 LCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp BCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 5999952 3467889999999999988887 76
No 38
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=35.71 E-value=27 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.233 Sum_probs=20.4
Q ss_pred ccccccCCCcchhHHHHHHHhcC
Q 008789 179 LRGLNNLGSTCFMNSVLQALLHA 201 (553)
Q Consensus 179 ~~GL~NlGNtCY~NsvLQ~L~~~ 201 (553)
+.|+.|.-++|++|++||+...+
T Consensus 13 fys~pN~hdncWLNtilQLfryv 35 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRYV 35 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHHc
Confidence 67899999999999999998654
No 39
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=35.35 E-value=40 Score=28.03 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeeeeEEEeeEEEeCCCCCcccc
Q 008789 272 HEFFISMLDGIHENGVKARSPIKDTGECHCVAHRVFSGQLRSDVTCMSCGYTSTT 326 (553)
Q Consensus 272 ~Efl~~lL~~L~~~~~~~~~~~~~~~~~~~~i~~~F~g~l~~~i~C~~C~~~s~~ 326 (553)
-|.|.+.++.+.+...-... ++---...-...|.+||+....
T Consensus 41 ~e~l~faf~~~~~gt~~e~A-------------~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 41 EDIVKFAMEQLFAGTIAEGA-------------EIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp HHHHHHHHHHHHTTSTTTTC-------------EEEEEEECCEEEETTTCCEEEG
T ss_pred HHHHHHHHHHHHcCCcccCC-------------EEEEEecCCcEECCCCCCEEec
Confidence 56677888888654311100 1111244556899999987544
No 40
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=34.99 E-value=19 Score=26.56 Aligned_cols=33 Identities=24% Similarity=0.564 Sum_probs=26.7
Q ss_pred CCCCccCC-C-CCCeEEecccCCcccchhHHh-hhc
Q 008789 54 PRCCFCNG-Y-QKRLYLCLICSSISCSSHTLL-HSQ 86 (553)
Q Consensus 54 ~~c~~C~~-~-~~~~~~Cl~Cg~~~c~~h~~~-H~~ 86 (553)
..|..|.. . ....--||+|...+|..|... |..
T Consensus 31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 31 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPN 66 (78)
T ss_dssp CBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCC
T ss_pred ccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCC
Confidence 46999952 2 467889999999999999996 965
No 41
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=33.37 E-value=24 Score=25.87 Aligned_cols=28 Identities=29% Similarity=0.600 Sum_probs=21.3
Q ss_pred CCCc--cCCCCCCeEEecccCCcccchhHH
Q 008789 55 RCCF--CNGYQKRLYLCLICSSISCSSHTL 82 (553)
Q Consensus 55 ~c~~--C~~~~~~~~~Cl~Cg~~~c~~h~~ 82 (553)
+|.. |....--.+.|-.|+.+||..|.+
T Consensus 16 ~Cs~~~C~~~dflpf~C~~C~~~FC~~HR~ 45 (75)
T 1wys_A 16 HCQVQHCRQRDFLPFVCDGCSGIFCLEHRS 45 (75)
T ss_dssp CCSCTTTCCCSCCCEECTTTCCEECSTTCS
T ss_pred CcCcccCCCccceeeECcccCcCcCcccCC
Confidence 6877 864444468899999999986655
No 42
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.68 E-value=17 Score=27.44 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=21.8
Q ss_pred CCCCc--cCCCCCCeEEecccCCcccchhHH
Q 008789 54 PRCCF--CNGYQKRLYLCLICSSISCSSHTL 82 (553)
Q Consensus 54 ~~c~~--C~~~~~~~~~Cl~Cg~~~c~~h~~ 82 (553)
.+|.. |.....-.+.|-.||..||..|.+
T Consensus 26 ~~C~~~~Ck~~~~l~f~C~~C~~~FC~~HR~ 56 (86)
T 1wfe_A 26 YSCSFKGCTDVELVAVICPYCEKNFCLRHRH 56 (86)
T ss_dssp EECCSTTCCCEESSCEECTTTCCEECGGGCS
T ss_pred CCCCCcCCCCCCccceECCCCCcccccccCC
Confidence 46877 854344567899999999987765
No 43
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.31 E-value=15 Score=24.05 Aligned_cols=12 Identities=25% Similarity=0.467 Sum_probs=8.0
Q ss_pred eEEecccCCccc
Q 008789 66 LYLCLICSSISC 77 (553)
Q Consensus 66 ~~~Cl~Cg~~~c 77 (553)
+|.||.||..+-
T Consensus 3 iY~C~rCg~~fs 14 (48)
T 4ayb_P 3 VYRCGKCWKTFT 14 (48)
T ss_dssp --CCCCTTTTCC
T ss_pred EEEeeccCCCcc
Confidence 678888888774
No 44
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.27 E-value=21 Score=23.42 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=6.4
Q ss_pred eEEecccCCcc
Q 008789 66 LYLCLICSSIS 76 (553)
Q Consensus 66 ~~~Cl~Cg~~~ 76 (553)
.|.|..||++.
T Consensus 4 ~y~C~vCGyvy 14 (46)
T 6rxn_A 4 KYVCNVCGYEY 14 (46)
T ss_dssp CEEETTTCCEE
T ss_pred EEECCCCCeEE
Confidence 45666666554
No 45
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.26 E-value=51 Score=24.01 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCCCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEe
Q 008789 53 IPRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVY 112 (553)
Q Consensus 53 ~~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~ 112 (553)
...|..|.....+..+ +.|||++|..-...+.. . ...|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~-~------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNPVV-TKCRHYFCESCALEHFR-A------------TPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHH-H------------CSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHH-C------------CCcCCCcCcccc
Confidence 3469999544445444 89999999866666654 2 235888887764
No 46
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=27.57 E-value=67 Score=22.90 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCCCCccCCCCCCeEEecc-cCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEE
Q 008789 53 IPRCCFCNGYQKRLYLCLI-CSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQV 111 (553)
Q Consensus 53 ~~~c~~C~~~~~~~~~Cl~-Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v 111 (553)
...|..|.....+... +. |||.||..-...+.. .. +...|-.|...+
T Consensus 15 ~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~-~~----------~~~~CP~Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALL-ES----------DEHTCPTCHQND 62 (74)
T ss_dssp GGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHH-HS----------SSSCCSSSCCSS
T ss_pred CCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHH-hc----------CCCcCCCCCCcC
Confidence 3469999544455544 77 999999877666664 21 234577887653
No 47
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=27.55 E-value=20 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=32.8
Q ss_pred CCCCCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeC
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYD 113 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d 113 (553)
+...|..|.....+... |.|||.+|..-...+...... -......|-.|...+..
T Consensus 11 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~------~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVT------SMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSS------SCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhccc------CCCCCCcCCCCCCcCCH
Confidence 34469999432333333 689999998666655542100 01346678889877754
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=27.47 E-value=34 Score=28.77 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=33.4
Q ss_pred CCCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeCC
Q 008789 54 PRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYDP 114 (553)
Q Consensus 54 ~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d~ 114 (553)
..|..|.....+... +.||+.||......+.. . ....|-.|...+...
T Consensus 79 ~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~-~-----------~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK-A-----------QVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH-T-----------TCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEE-cCCCCchhHHHHHHHHH-h-----------CCCcCCCCCccCCCC
Confidence 469999543444444 89999999877777765 2 234688998877643
No 49
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.01 E-value=24 Score=24.60 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=20.9
Q ss_pred CCCCCccCCCCCCeEEecccCCcccchhHHhhh
Q 008789 53 IPRCCFCNGYQKRLYLCLICSSISCSSHTLLHS 85 (553)
Q Consensus 53 ~~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~ 85 (553)
...|..|.....+... +.|||++|..-...+.
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ-TECGHRFCESCMAALL 46 (66)
T ss_dssp CEECTTTCCEESSCCC-CSSSCCCCHHHHHHHH
T ss_pred CCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHH
Confidence 3469999433333333 7999999986666555
No 50
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.37 E-value=38 Score=19.50 Aligned_cols=23 Identities=17% Similarity=0.544 Sum_probs=16.5
Q ss_pred CCCeEEecccCCcccc-----hhHHhhh
Q 008789 63 QKRLYLCLICSSISCS-----SHTLLHS 85 (553)
Q Consensus 63 ~~~~~~Cl~Cg~~~c~-----~h~~~H~ 85 (553)
....|.|-.||..+-. .|...|.
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2els_A 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHT 33 (36)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred CCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence 3467899999999886 4555554
No 51
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.65 E-value=44 Score=26.05 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeC
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYD 113 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d 113 (553)
.|..|.....+... +.|||.+|..-...+... . .+..-|-.|...+..
T Consensus 23 ~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-~---------~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQ-K---------KGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHS-S---------SSSCCCTTTSCCCCT
T ss_pred CCcccChhhcCeEE-CCCCCHHHHHHHHHHHHh-C---------CCCCCCcCCCCcCCH
Confidence 59999533333333 789999999777777652 1 234568888877653
No 52
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.36 E-value=34 Score=18.02 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=10.3
Q ss_pred eEEecccCCcccc
Q 008789 66 LYLCLICSSISCS 78 (553)
Q Consensus 66 ~~~Cl~Cg~~~c~ 78 (553)
.|.|-.||..+-.
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 5788889988775
No 53
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=24.75 E-value=49 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCCCccCCCCCCeEEecccCCcccchhHHhhhc
Q 008789 54 PRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQ 86 (553)
Q Consensus 54 ~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~ 86 (553)
..|..|.....+..+.+.|||.+|..-......
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHh
Confidence 369999544455568899999999866655543
No 54
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.65 E-value=37 Score=18.15 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=10.5
Q ss_pred eEEecccCCcccc
Q 008789 66 LYLCLICSSISCS 78 (553)
Q Consensus 66 ~~~Cl~Cg~~~c~ 78 (553)
.+.|-.||..+-.
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 5788889988875
No 55
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=24.32 E-value=41 Score=25.71 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=31.9
Q ss_pred CCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeC
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYD 113 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d 113 (553)
.|..|.....+....+.|||.+|..-...+.. . ...|-.|...+..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~------------~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 24 RCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-Y------------KTQCPTCCVTVTE 69 (99)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-T------------CCBCTTTCCBCCG
T ss_pred CcccCChhhCCcCEECCCCCHhhHHHHHHHHH-C------------CCCCCCCCCcCCh
Confidence 59999544455555568999999877666664 2 1368888877653
No 56
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.33 E-value=30 Score=18.33 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=12.9
Q ss_pred EEecccCCcccc-----hhHHhhh
Q 008789 67 YLCLICSSISCS-----SHTLLHS 85 (553)
Q Consensus 67 ~~Cl~Cg~~~c~-----~h~~~H~ 85 (553)
|.|-.||..+.. .|...|.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~ 26 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKAHLKIHI 26 (29)
T ss_dssp CCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHHHhc
Confidence 567778888775 5655554
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=22.26 E-value=38 Score=28.87 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEe
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVY 112 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~ 112 (553)
.|..|.....+...++.|||.+|......+.. . +...|-.|...+.
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~-----------~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALR-S-----------GNKECPTCRKKLV 101 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH-T-----------TCCBCTTTCCBCC
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHH-h-----------CcCCCCCCCCcCC
Confidence 69999555567777789999999877666664 1 1345888887763
No 58
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.17 E-value=54 Score=18.58 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=15.7
Q ss_pred CCeEEecccCCcccc-----hhHHhhh
Q 008789 64 KRLYLCLICSSISCS-----SHTLLHS 85 (553)
Q Consensus 64 ~~~~~Cl~Cg~~~c~-----~h~~~H~ 85 (553)
...|.|-.||..+-. .|...|.
T Consensus 5 ~k~~~C~~C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 5 KRPFVCRICLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp CSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence 457899999998876 4555553
No 59
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.83 E-value=75 Score=23.00 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=31.9
Q ss_pred CCCCCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeC
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYD 113 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d 113 (553)
+...|..|.....+.. -+.|||.+|..-...+... .. ...+...|-.|...+..
T Consensus 18 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~-~~------~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPL-SLDCGHSFCQACLTANHKK-SM------LDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCB-CCSSSCCBCTTHHHHHHHH-HH------HTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCce-eCCCCCHHHHHHHHHHHHH-hh------cCCCCCcCCCCCCccCH
Confidence 3457999953333433 3689999998655555431 00 01235668888877653
No 60
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.70 E-value=75 Score=22.42 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeC
Q 008789 53 IPRCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYD 113 (553)
Q Consensus 53 ~~~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d 113 (553)
...|..|.....+...-+.|||.||..-...+.. . ...|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~------------~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFY-Y------------SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH-H------------CSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH-c------------CCcCCCcCcccCc
Confidence 3469999544455555559999999866666654 2 1357778776643
No 61
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.66 E-value=42 Score=17.71 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=13.9
Q ss_pred eEEecccCCcccc-----hhHHhhh
Q 008789 66 LYLCLICSSISCS-----SHTLLHS 85 (553)
Q Consensus 66 ~~~Cl~Cg~~~c~-----~h~~~H~ 85 (553)
.+.|-.||..+.. .|...|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHLRIHS 26 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHHHHHhc
Confidence 3678889988875 5655554
No 62
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.53 E-value=22 Score=24.85 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=16.7
Q ss_pred CCCCCCccCCCCCCeEEecccCCc
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSI 75 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~ 75 (553)
....|..|+.....-.+|..||++
T Consensus 29 ~l~~c~~cG~~~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 29 NLTECPQCHGKKLSHHICPNCGYY 52 (60)
T ss_dssp CCEECTTTCCEECTTBCCTTTCBS
T ss_pred CceECCCCCCEeCCceEcCCCCcC
Confidence 444688886545556788888865
No 63
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.07 E-value=77 Score=21.75 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=10.2
Q ss_pred EEEECCCCcEEEcCCCCEE
Q 008789 93 IAVDIERSELYCVLCCDQV 111 (553)
Q Consensus 93 ~~~~~~~~~~~c~~c~~~v 111 (553)
+..+-..+.+.|-.|+--|
T Consensus 22 lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 22 LVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CEECSSSCCEECTTTCCEE
T ss_pred eeEeCCCCeEEeCCCCCEE
Confidence 3344455666666665444
No 64
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.87 E-value=47 Score=18.81 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=14.1
Q ss_pred EEecccCCcccc-----hhHHhhhc
Q 008789 67 YLCLICSSISCS-----SHTLLHSQ 86 (553)
Q Consensus 67 ~~Cl~Cg~~~c~-----~h~~~H~~ 86 (553)
+.|-.||..+-. .|...|..
T Consensus 3 ~~C~~C~k~F~~~~~L~~H~~~H~~ 27 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSKHITLHEL 27 (33)
T ss_dssp CCCSSSCCCCSSHHHHHHHHHHHTT
T ss_pred ccCCCCCchhCCHHHHHHHHHHhCC
Confidence 567788888775 66666654
No 65
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=20.68 E-value=19 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=16.0
Q ss_pred CCCCCCccCCCCCCeEEecccCCc
Q 008789 52 EIPRCCFCNGYQKRLYLCLICSSI 75 (553)
Q Consensus 52 ~~~~c~~C~~~~~~~~~Cl~Cg~~ 75 (553)
....|..|+.....=.+|..||++
T Consensus 29 ~l~~c~~cGe~~~~H~vc~~CG~Y 52 (60)
T 3v2d_5 29 TLVPCPECKAMKPPHTVCPECGYY 52 (60)
T ss_dssp CCEECTTTCCEECTTSCCTTTCEE
T ss_pred ceeECCCCCCeecceEEcCCCCcC
Confidence 345688886444455778888865
No 66
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.61 E-value=56 Score=18.58 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=16.0
Q ss_pred CCeEEecccCCcccc-----hhHHhhh
Q 008789 64 KRLYLCLICSSISCS-----SHTLLHS 85 (553)
Q Consensus 64 ~~~~~Cl~Cg~~~c~-----~h~~~H~ 85 (553)
...+.|-.||..+-. .|...|.
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elt_A 7 GKPYKCPQCSYASAIKANLNVHLRKHT 33 (36)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence 457899999998876 5555554
No 67
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=20.61 E-value=55 Score=25.44 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=33.3
Q ss_pred CCCccCCCCCCeEEecccCCcccchhHHhhhcCCCCCeEEEECCCCcEEEcCCCCEEeC
Q 008789 55 RCCFCNGYQKRLYLCLICSSISCSSHTLLHSQCENGHDIAVDIERSELYCVLCCDQVYD 113 (553)
Q Consensus 55 ~c~~C~~~~~~~~~Cl~Cg~~~c~~h~~~H~~~~~~H~~~~~~~~~~~~c~~c~~~v~d 113 (553)
.|..|.....+....+.|||.+|..-...+.. .. ..|-.|...+..
T Consensus 17 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~------------~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TS------------KYCPICDVQVHK 62 (108)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-SC------------SBCTTTCCBSCS
T ss_pred CCccCChHHhCcCEeCCCCChhhHHHHHHHHH-hC------------CcCcCCCccccc
Confidence 59999544556666679999999877777765 21 468888877653
No 68
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.43 E-value=37 Score=22.88 Aligned_cols=7 Identities=43% Similarity=1.103 Sum_probs=2.6
Q ss_pred EEecccC
Q 008789 67 YLCLICS 73 (553)
Q Consensus 67 ~~Cl~Cg 73 (553)
|.|..||
T Consensus 3 ~~C~~CG 9 (52)
T 1yk4_A 3 LSCKICG 9 (52)
T ss_dssp EEESSSS
T ss_pred EEeCCCC
Confidence 3333333
No 69
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=20.05 E-value=22 Score=32.03 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred CeEEecccCCcccc-hhHHhhhcCCCCCeE
Q 008789 65 RLYLCLICSSISCS-SHTLLHSQCENGHDI 93 (553)
Q Consensus 65 ~~~~Cl~Cg~~~c~-~h~~~H~~~~~~H~~ 93 (553)
-...|+.||..+-| .-|..|+. +|+|.=
T Consensus 179 ~~l~C~~C~~~~~g~~~a~~ha~-~tgH~~ 207 (212)
T 3by4_A 179 AQIKCNTCQMTFVGEREVARHAE-STGHVD 207 (212)
T ss_dssp ------------------------------
T ss_pred eEEEcccCCCcccCHHHHHHHHH-HhCCCC
Confidence 34569999999998 77899998 799963
No 70
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.04 E-value=69 Score=18.77 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=15.5
Q ss_pred CCeEEecccCCcccc-----hhHHhhh
Q 008789 64 KRLYLCLICSSISCS-----SHTLLHS 85 (553)
Q Consensus 64 ~~~~~Cl~Cg~~~c~-----~h~~~H~ 85 (553)
...+.|-.||..+-. .|...|.
T Consensus 4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 30 (39)
T 1njq_A 4 PRSYTCSFCKREFRSAQALGGHMNVHR 30 (39)
T ss_dssp SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred CCceECCCCCcccCCHHHHHHHHHHcC
Confidence 456889999998876 4555554
Done!