Query 008790
Match_columns 553
No_of_seqs 164 out of 293
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 16:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4398 Uncharacterized protei 100.0 4.5E-63 9.8E-68 493.8 26.8 366 62-548 6-388 (389)
2 COG3287 Uncharacterized conser 100.0 2.8E-29 6.1E-34 262.8 22.3 361 71-545 10-379 (379)
3 PF08495 FIST: FIST N domain; 99.9 5.9E-21 1.3E-25 181.8 13.9 195 90-354 1-198 (198)
4 PF10442 FIST_C: FIST C domain 99.7 1.7E-17 3.7E-22 150.7 9.7 97 391-514 37-135 (136)
5 PF00646 F-box: F-box domain; 96.8 0.00056 1.2E-08 51.3 1.7 36 23-58 6-41 (48)
6 PF12937 F-box-like: F-box-lik 96.7 0.00084 1.8E-08 50.6 1.5 34 23-56 4-37 (47)
7 smart00256 FBOX A Receptor for 96.1 0.0028 6.2E-08 45.3 1.6 33 24-56 2-34 (41)
8 PF10442 FIST_C: FIST C domain 91.6 0.32 7E-06 44.1 5.1 55 75-132 74-135 (136)
9 PF08495 FIST: FIST N domain; 86.1 4.1 8.8E-05 38.7 8.6 106 21-128 12-135 (198)
10 TIGR01305 GMP_reduct_1 guanosi 57.6 54 0.0012 35.5 8.8 81 49-134 82-167 (343)
11 PRK02842 light-independent pro 50.1 35 0.00077 37.4 6.3 93 38-131 39-142 (427)
12 PRK05096 guanosine 5'-monophos 48.0 35 0.00077 36.8 5.7 68 61-133 97-167 (346)
13 PF10649 DUF2478: Protein of u 46.7 24 0.00052 34.1 3.8 100 24-128 12-133 (159)
14 cd01979 Pchlide_reductase_N Pc 38.1 79 0.0017 34.3 6.7 91 37-131 29-131 (396)
15 PRK02048 4-hydroxy-3-methylbut 37.6 33 0.00071 39.7 3.7 35 94-128 518-559 (611)
16 PF12327 FtsZ_C: FtsZ family, 37.4 1.3E+02 0.0028 26.3 6.7 61 63-126 5-76 (95)
17 COG0635 HemN Coproporphyrinoge 36.7 30 0.00064 38.1 3.1 100 41-151 40-147 (416)
18 PRK00694 4-hydroxy-3-methylbut 32.5 46 0.001 38.3 3.8 34 95-128 511-551 (606)
19 PF12000 Glyco_trans_4_3: Gkyc 30.8 1.7E+02 0.0036 28.6 6.9 67 415-509 31-97 (171)
20 KOG0281 Beta-TrCP (transducin 30.4 30 0.00065 37.6 1.8 30 25-54 84-113 (499)
21 PLN02925 4-hydroxy-3-methylbut 27.3 62 0.0013 38.2 3.7 68 89-190 630-704 (733)
22 COG3287 Uncharacterized conser 26.5 1.1E+02 0.0024 33.6 5.3 44 466-514 29-72 (379)
23 TIGR00065 ftsZ cell division p 26.4 6.2E+02 0.013 27.4 11.0 85 40-125 206-305 (349)
24 COG2515 Acd 1-aminocyclopropan 23.6 3E+02 0.0065 29.7 7.6 80 47-128 131-217 (323)
25 PLN03215 ascorbic acid mannose 21.3 51 0.0011 36.0 1.6 33 23-55 7-40 (373)
26 cd02201 FtsZ_type1 FtsZ is a G 20.9 5.8E+02 0.013 26.7 9.3 78 43-124 193-285 (304)
27 PF06277 EutA: Ethanolamine ut 20.2 3.9E+02 0.0085 30.3 8.1 97 32-131 335-445 (473)
No 1
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=4.5e-63 Score=493.78 Aligned_cols=366 Identities=22% Similarity=0.288 Sum_probs=314.3
Q ss_pred ceeeeecCCCChhHHHHHHHHHHHcCCCC-CceEEEEEecccC---HHHHHHHHHHhcCCCCcEEEeeeeeeeccccccc
Q 008790 62 RIASACSFKASAPIALQEVLDKVLLEPIR-PHFAIANVGRGFN---MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTD 137 (553)
Q Consensus 62 k~a~~~S~~pd~~~A~~Evv~~~l~e~~~-p~~~ia~~~~~~~---~~~~l~~i~~~~g~~~plig~~~~Giig~d~~~~ 137 (553)
+.+-|.|+.|+.++|+.||+.|+.+|... .+.+++|+++.-+ ..++|.++++++.. ..||||++.|||++.+
T Consensus 6 ~w~nAlstRpsle~A~~ea~~~a~~~l~g~~~l~~v~l~Sra~~~~aa~vlp~v~e~ls~-p~lIGC~~~giia~~~--- 81 (389)
T COG4398 6 GWSNALSTRPSLERAAVEAAAQARDELAGEAPLLAVLLGSRAHTDRAADVLPAVQEMLSP-PALIGCIAQGIVAGRH--- 81 (389)
T ss_pred eeecccccchhHHHHHHHHHHHhhhcccCCCCEEEEEecccchhhhHHHHHHHHHHhcCc-cceeeecccceeeeee---
Confidence 34567888999999999999999999744 4555559998533 88999999999985 8899999999997665
Q ss_pred ccccccccccccccccccccccccccceEEeecccCCCcccccccccccc-----ccccccCCccccccCCCCcccccce
Q 008790 138 EFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKE-----IVQVPVDDTYVDVYLAPPVPMIDQF 212 (553)
Q Consensus 138 e~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~~G~~pgl~v~~~pl~~~~~-----~~~~~~~~~~~~~~~~~~~~~vD~~ 212 (553)
|++.+. ++++|+.. |+.+++++|.+-|+ |.++.+|.|..|.|+ .+.|
T Consensus 82 ElE~E~--------------------A~s~~lA~--Gv~~~~F~l~~~~t~~~a~i~~~~~d~t~~~~~i----lL~d-- 133 (389)
T COG4398 82 ELEDEP--------------------AVSVWLAS--GVAAETFHLDFVRTGSGALITGYRFDRTARDLHL----LLPD-- 133 (389)
T ss_pred eecCCc--------------------eEEEEecc--CcccceeecccccCCCcceEEeeecCCCCCCceE----EccC--
Confidence 766555 79999955 99999999887776 444555554444444 4434
Q ss_pred ecccccccccccCCCCCcEEEEecCCCCChhHHHHHhhhhcCCCceeecccccccccccCCccceeeCCCceeCceEEEE
Q 008790 213 VMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALV 292 (553)
Q Consensus 213 ~~d~~~~~~~~s~~~~p~gi~mfgd~~~d~~~ll~gL~~al~~~~vI~Gg~ag~~~f~~~~~sr~~~~~~v~~~gaVal~ 292 (553)
|| ++....++++|+.++|..+++.|-++|. +.+++.+.|++..++.++.|||.
T Consensus 134 -----p~-------------------t~~~n~li~~l~~~~PgttvvGG~~Sgg---~~~G~~~Lf~~~~~~~~G~vGv~ 186 (389)
T COG4398 134 -----PY-------------------TFPSNLLIEHLNTDLPGTTVVGGVVSGG---RRRGDTRLFRDHDVLTSGVVGVR 186 (389)
T ss_pred -----Cc-------------------ccchHHHhhccCcCCCCceEEccEeecC---ccCCceEEeecCCcccCceeEEe
Confidence 33 5555899999999999877666667776 56667899999999999999999
Q ss_pred EecCCCCCCCCCCEEEEEEeccCCeecCCCeEEEEeccccccCceeeccccccccccccCchHhHHhhHH-------hcc
Q 008790 293 FASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQL-------ENR 365 (553)
Q Consensus 293 f~~d~~~~~~~G~i~~~~~vsqGcrPiGp~~~VT~v~~~~segNv~l~~~~~g~l~eLDg~pAL~~L~e~-------~~~ 365 (553)
+ .| ++..+.|+|||||||.+|.|| ++++|+ +.||+|+|-|..|.++ +++
T Consensus 187 L---------~G-i~l~~vVsQGCRPIGeP~iVt-----~a~~ni---------ItEl~gr~PL~~Lr~ii~~lsp~er~ 242 (389)
T COG4398 187 L---------PG-IRLVPVVSQGCRPIGEPYIVT-----GADGNI---------ITELGGRPPLQRLREIVEGLSPDERA 242 (389)
T ss_pred e---------cc-ceecchhccCcccCCCceEee-----ccCcee---------EeecCCCChHHHHHHHhhccChhhHH
Confidence 9 77 999999999999999999999 899999 9999999999976654 788
Q ss_pred CCCcceEEEEeeccccccCCCCCceeeeeeeccccccCccc-ceeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 008790 366 FPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY-LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNL 444 (553)
Q Consensus 366 l~~~~L~iGv~~~~~~~~~~~~~~lvR~l~v~~VlG~D~e~-sI~~g~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l 444 (553)
|.+++|+||++++|++..-.+++|++|.+ +|+||.. +|.+++-|++|+++||++||.+++.+||+-..+..
T Consensus 243 L~~~~L~iGi~~DE~~~~~~qGDFlIR~l-----LG~DPs~GaIaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~--- 314 (389)
T COG4398 243 LVSHGLQIGIVVDEHLAAPGQGDFLIRGL-----LGADPSTGAIAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA--- 314 (389)
T ss_pred HHhcCceEEEEehhhhcCCCCCceEeeec-----cccCCCCCceeecceeccCcEEEEEEcccccchhHHHHHHHHH---
Confidence 99999999999999887778899999999 9999999 89999999999999999999999999888766544
Q ss_pred hhccCCCCccccccccCccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCC
Q 008790 445 KLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQES 524 (553)
Q Consensus 445 ~~~~~~k~~~~~~~~~~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~Lg~vPlaGFy~~GEIgP~~~~~v~g~~ 524 (553)
.+++ ...++|||||||+|||..|||.+|+|+++|.+.||++|++||||+||||| +++
T Consensus 315 ~~e~----------------~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g-- 371 (389)
T COG4398 315 AAEL----------------PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG-- 371 (389)
T ss_pred HhhC----------------CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc--
Confidence 3333 35689999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCcccccccccceeeeeeccC
Q 008790 525 QEESPAERRYLHVYSTAYLVISYS 548 (553)
Q Consensus 525 ~~~~~~~~~~LH~yT~v~~l~se~ 548 (553)
+|+|||||+++++|.++
T Consensus 372 -------r~~LHG~Ts~~ai~~~~ 388 (389)
T COG4398 372 -------RNALHGFTASMALFVDD 388 (389)
T ss_pred -------hhhhhccceeeEEEeec
Confidence 99999999999999765
No 2
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=262.82 Aligned_cols=361 Identities=14% Similarity=0.106 Sum_probs=245.2
Q ss_pred CChhHHHHHHHHHHHcCC-CCCceEEE-EEecccCHHHHHHHHHHhcCCCCcEEEeeeeeeecccccccccccccccccc
Q 008790 71 ASAPIALQEVLDKVLLEP-IRPHFAIA-NVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHE 148 (553)
Q Consensus 71 pd~~~A~~Evv~~~l~e~-~~p~~~ia-~~~~~~~~~~~l~~i~~~~g~~~plig~~~~Giig~d~~~~e~~~~~~~~~~ 148 (553)
++..+|-+++.+.+..-. +++.|++. |.-..++|..+...|++.++ ++++|||+|.|+|..+ ++++-++
T Consensus 10 ~~~~d~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~p-g~~liGCSTaGeitp~----g~~~~~V---- 80 (379)
T COG3287 10 SDGKDAESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFP-GICLIGCSTAGEITPD----GFKNGSV---- 80 (379)
T ss_pred cCcCCHHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCC-CCeEeccccCceEccc----cccCCeE----
Confidence 344444443333333333 78999997 66666668899999999999 7999999999999844 4443331
Q ss_pred cccccccccccccccceEEeecccCCCccccccccccccccccccCCccccccCCCCcccccceecccccccccccCCCC
Q 008790 149 DIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCAS 228 (553)
Q Consensus 149 ~~~~~~~~~~~~~~~gi~l~~G~~pgl~v~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~~d~~~~~~~~s~~~~ 228 (553)
-.+.+++.....-+ . ++-. +.+.-.++-.. ..++++..|... ..+ -+-
T Consensus 81 -~il~~~~~~~a~~s-------~--~~~~--------------~~s~~~~~~i~----~~~E~l~~~~~~---~~~-~~r 128 (379)
T COG3287 81 -LLLAFDSSEFAALS-------T--ALVD--------------RESPVSRDPIA----EAIERLIRDKRD---RLS-PTR 128 (379)
T ss_pred -EEEEechHHHHHhh-------h--hhcc--------------ccCcccchhHH----HHHHHHHhcccc---ccc-ccC
Confidence 11112233222100 0 0001 11110000001 222221111110 011 122
Q ss_pred CcEEEEecCCCCC-hhHHHHHhhhhcCCCceeecccccc-cccccCCccceeeCCCceeCceEEEEEecCCCCCCCCCCE
Q 008790 229 PVGIIMFGKEDMD-QKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEI 306 (553)
Q Consensus 229 p~gi~mfgd~~~d-~~~ll~gL~~al~~~~vI~Gg~ag~-~~f~~~~~sr~~~~~~v~~~gaVal~f~~d~~~~~~~G~i 306 (553)
+...+.|-|+..+ .+.+++++..+....++|.||.+|| +.|+++ ++++++++..++||-+++ ++.+
T Consensus 129 ~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~t---~v~~~g~v~~~aavi~l~---------~t~l 196 (379)
T COG3287 129 PVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFERT---YVFDEGEVHEDAAVILLF---------GTQL 196 (379)
T ss_pred ceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCCCCccceE---EEEEccccccCceEEEEe---------cceE
Confidence 4677888888444 6667776778888889999999998 799887 889999999999999999 9999
Q ss_pred EEEEEeccCCeecCCCeEEEEeccccccCceeeccccccccccccCchHhHHhhHHh---ccCCCcceE-EEEeeccccc
Q 008790 307 QFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLE---NRFPQVELY-VGVTKRRKCS 382 (553)
Q Consensus 307 ~~~~~vsqGcrPiGp~~~VT~v~~~~segNv~l~~~~~g~l~eLDg~pAL~~L~e~~---~~l~~~~L~-iGv~~~~~~~ 382 (553)
.|+++..+||.|.+.+++|| |+++|+ ++||||+||.+.+.++- ++++...+. .++...+.
T Consensus 197 ~f~~~~~~g~~Pt~~~~~VT-----ka~~~v---------V~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~pl~~~~~-- 260 (379)
T COG3287 197 KFGHGFAHGFVPTDKTGVVT-----KADGDV---------VYEIDGEPAAEEYAEVVGAVEELDPEMFIPNPLGVRDL-- 260 (379)
T ss_pred EeecccccceEEccceEEEE-----eecCcE---------EEEeCCCcHHHHHHHHhCchhhcChhHhcccceEEEeC--
Confidence 99999999999999999999 888999 99999999999666553 344332222 23333221
Q ss_pred cCCCCCceeeeeeeccccccCcccceeec-cCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCCCccccccccC
Q 008790 383 IGSEKSRLITTLAFHGIRGGDQEYLYVDG-VGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVAN 461 (553)
Q Consensus 383 ~~~~~~~lvR~l~v~~VlG~D~e~sI~~g-~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~~~~~~~~~ 461 (553)
...+++|.+ ...|++.++.+- ..|+.|..++++.... +..+++++ ++.+..++
T Consensus 261 ---~~~y~vr~p-----~~~~e~~~~~f~~~~i~~~v~lr~~~~~~--~~~~~e~~---~~~a~~~~------------- 314 (379)
T COG3287 261 ---GPLYYVRAP-----QFVDEEGGLIFLSAAIPLGVVLRLGETGG--IERVTERA---LRRAFEDL------------- 314 (379)
T ss_pred ---CCcEEEeCc-----ceeccccceEEeeccCCCccEEEeecCCc--ccHHHHHH---HHHHHhhc-------------
Confidence 345777777 899988865554 4999999999997555 33333332 22223332
Q ss_pred ccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCccccccccccee
Q 008790 462 SIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTA 541 (553)
Q Consensus 462 ~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~Lg~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~v 541 (553)
++++.+-|.|+|++| .++-+.+.+.+.+++.+|.=|.+|||||||++| ..+ .+..||+|.+
T Consensus 315 ---~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~-----~~g---------~~~h~Nqtf~ 375 (379)
T COG3287 315 ---PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGP-----ITG---------ENVHHNQTFV 375 (379)
T ss_pred ---cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceecccccccccc-----ccc---------cceeeeeEEE
Confidence 234899999999999 677899999999999999669999999999999 336 6899999987
Q ss_pred eeee
Q 008790 542 YLVI 545 (553)
Q Consensus 542 ~~l~ 545 (553)
-.+|
T Consensus 376 ~v~f 379 (379)
T COG3287 376 GVAF 379 (379)
T ss_pred EEeC
Confidence 6554
No 3
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.85 E-value=5.9e-21 Score=181.77 Aligned_cols=195 Identities=17% Similarity=0.276 Sum_probs=142.4
Q ss_pred CCceEEEEEecccCHHH-HHHHHHHhcCCCCcEEEeeeeeeecccccccccccccccccccccccccccccccccceEEe
Q 008790 90 RPHFAIANVGRGFNMRR-TLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLT 168 (553)
Q Consensus 90 ~p~~~ia~~~~~~~~~~-~l~~i~~~~g~~~plig~~~~Giig~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~gi~l~ 168 (553)
||+++|+|....|+.+. +++.|++++| ..++|||++.|+|.... ++ ..+ .+|+++
T Consensus 1 ~p~lvi~f~s~~~~~~~~i~~~l~~~~p-~~~iiG~st~g~i~~~~--~~----------------~~~-----~~v~~~ 56 (198)
T PF08495_consen 1 RPDLVILFCSPEYDEEAKILEALRERLP-DAPIIGCSTAGEICGGN--EG----------------YSD-----DGVSLL 56 (198)
T ss_pred CCEEEEEEecchhhhhHHHHHHHHHHCC-CCcEEEEccCchhCCCc--CC----------------CCC-----ccEEEE
Confidence 79999999999999888 9999999999 79999999999997510 01 111 144444
Q ss_pred ecccCCCccccccccccccccccccCCccccccCCCCcccccceecccccccccccCCCCCcEEEEecCC-CCChhHHHH
Q 008790 169 VGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKE-DMDQKPIIE 247 (553)
Q Consensus 169 ~G~~pgl~v~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~~d~~~~~~~~s~~~~p~gi~mfgd~-~~d~~~ll~ 247 (553)
. ++.-.+...-. ...+++... .....+++.++..++... ....+++|.|+ +.+.+++++
T Consensus 57 ~--~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~~~l~~~d~~~~~~~~~l~ 116 (198)
T PF08495_consen 57 G--FSSSEVRVFAS------LIDPFSEDP----IEAAREALRDLVKSLDSD--------PSPFLLLFADGLSSSEEELLE 116 (198)
T ss_pred E--ecCCcEEEEEE------EccccCCCc----HHHHHHHHHHHHhhcccc--------CCcEEEEEeCCCCcCHHHHHH
Confidence 3 22211211110 001111100 011123333222222110 14678889998 888999999
Q ss_pred HhhhhcCCCceeecccccc-cccccCCccceeeCCCceeCceEEEEEecCCCCCCCCCCEEEEEEeccCCeecCCCeEEE
Q 008790 248 KLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAV 326 (553)
Q Consensus 248 gL~~al~~~~vI~Gg~ag~-~~f~~~~~sr~~~~~~v~~~gaVal~f~~d~~~~~~~G~i~~~~~vsqGcrPiGp~~~VT 326 (553)
+|.......++|+||.+|+ ..|+++ +++++++++++++|+++| .+++++.+.+.|||+|+|.+++||
T Consensus 117 ~l~~~~~~~~~i~GG~a~~~~~~~~~---~v~~~~~~~~~g~v~~~~---------~~~l~~~~~~~~g~~p~g~~~~VT 184 (198)
T PF08495_consen 117 GLYSSVGPDIPIFGGSAGDNLDFERT---YVFANGQVYSDGAVVVAF---------SGSLKIDSFVSHGWEPIGKPMTVT 184 (198)
T ss_pred HHHHhcCCCceEEEEECCCCCcCCce---EEEEeeeeccCcEEEEEE---------cCCceEEEEEecCeEeCCCCEEEE
Confidence 9988999999999999998 556555 999999999999999999 779999999999999999999999
Q ss_pred EeccccccCceeeccccccccccccCch
Q 008790 327 SVRANHAEGSTWLTAKREGHHVILDGEQ 354 (553)
Q Consensus 327 ~v~~~~segNv~l~~~~~g~l~eLDg~p 354 (553)
++++|+ ++||||||
T Consensus 185 -----~a~~~~---------I~eld~~P 198 (198)
T PF08495_consen 185 -----KAEGNI---------IYELDGRP 198 (198)
T ss_pred -----EecCCE---------EEEECCcC
Confidence 888999 99999998
No 4
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.72 E-value=1.7e-17 Score=150.71 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=83.1
Q ss_pred eeeeeeccccccCc-ccceeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCCCccccccccCccCCCcee
Q 008790 391 ITTLAFHGIRGGDQ-EYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVL 469 (553)
Q Consensus 391 vR~l~v~~VlG~D~-e~sI~~g~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~~~~~~~~~~~~~~~p~ 469 (553)
+|.+ +++|+ +.+|+++.+|++|+.||||.+|++.+.++++++++++ . ..+|.
T Consensus 37 ir~~-----~~~~~~~gsl~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~ 89 (136)
T PF10442_consen 37 IRSP-----LAIDPEDGSLTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPE 89 (136)
T ss_pred Eeee-----eEEcCCCCEEEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCce
Confidence 7776 99998 5599999999999999999999999998666655433 1 46799
Q ss_pred EEEEEEeCCCCcCCCCCCccchHhHHhhCCC-CceeeeecccccCC
Q 008790 470 GGFIFSCCGRGNSFFGGLNVDSFPFFENFPS-APLAGIFCGGEIGR 514 (553)
Q Consensus 470 gaLlFSC~GRG~~lfg~~~~E~~~v~e~Lg~-vPlaGFy~~GEIgP 514 (553)
++|+|+|+||...|....+.|++.+++.+|+ +|++||||||||+|
T Consensus 90 ~~l~f~C~~R~~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 90 GALIFSCIGRRLFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP 135 (136)
T ss_pred EEEEEECCCCHHHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence 9999999999544444788899999999995 99999999999998
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=96.84 E-value=0.00056 Score=51.29 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=30.5
Q ss_pred ccHHHHHHHHhhcCccccchhhhhcchhHHHhhhhh
Q 008790 23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSIL 58 (553)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (553)
-++|++++||++||..+.+..++|||+|++.|.+.-
T Consensus 6 LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 6 LPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH
T ss_pred CCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCC
Confidence 468999999999999999999999999999998754
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.66 E-value=0.00084 Score=50.60 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790 23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56 (553)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (553)
..+|++.+||+.||....+.+++|||.|+++|+.
T Consensus 4 LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 4 LPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp S-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 3589999999999999999999999999999953
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=96.12 E-value=0.0028 Score=45.32 Aligned_cols=33 Identities=30% Similarity=0.624 Sum_probs=30.4
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56 (553)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (553)
.+|++.+|+++||....+.+++|||+|+.+|..
T Consensus 2 P~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 2 PDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999864
No 8
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=91.56 E-value=0.32 Score=44.06 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCCCceEEE--EEecc-----cCHHHHHHHHHHhcCCCCcEEEeeeeeeecc
Q 008790 75 IALQEVLDKVLLEPIRPHFAIA--NVGRG-----FNMRRTLDFLVKHLGLRTPIILSVVHGVMGR 132 (553)
Q Consensus 75 ~A~~Evv~~~l~e~~~p~~~ia--~~~~~-----~~~~~~l~~i~~~~g~~~plig~~~~Giig~ 132 (553)
++.+++++++ ...+|.++|. |++.. ....+ ++.+++.++.++|++|+.+.|+|++
T Consensus 74 ~~~~~~~~~~--~~~~p~~~l~f~C~~R~~~l~~~~~~e-~~~~~~~~~~~~p~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 74 ESAEEALEKA--PGPPPEGALIFSCIGRRLFLGERFDEE-LEAFQEILGGDAPFIGFYTYGEIGP 135 (136)
T ss_pred HHHHHHHHhh--cCCCceEEEEEECCCCHHHhCcchHHH-HHHHHHHhCCCCCEEEEcccccccc
Confidence 4444444444 3477888888 55551 11333 8889999997799999999999874
No 9
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=86.12 E-value=4.1 Score=38.71 Aligned_cols=106 Identities=20% Similarity=0.180 Sum_probs=65.6
Q ss_pred ccccHH-HHHHHHhhcCccccchhhhhcch-h---------HHHhhhhhcccceeeeec----CCCChhHHHHHHHHHHH
Q 008790 21 LADCED-VLHNILSRLPAKSFASAACVNKS-W---------NCVCNSILSRPRIASACS----FKASAPIALQEVLDKVL 85 (553)
Q Consensus 21 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~k~a~~~S----~~pd~~~A~~Evv~~~l 85 (553)
-.+.+. +++.+-+++|- --..+|.+.- . ..++--.++...+.+..+ ..-++.++++++++++.
T Consensus 12 ~~~~~~~i~~~l~~~~p~--~~iiG~st~g~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T PF08495_consen 12 EYDEEAKILEALRERLPD--APIIGCSTAGEICGGNEGYSDDGVSLLGFSSSEVRVFASLIDPFSEDPIEAAREALRDLV 89 (198)
T ss_pred hhhhhHHHHHHHHHHCCC--CcEEEEccCchhCCCcCCCCCccEEEEEecCCcEEEEEEEccccCCCcHHHHHHHHHHHH
Confidence 345555 77777778883 2333443321 0 111122344555555544 45577899999999999
Q ss_pred cCC-CCCceEEEEE--ecccCHHHHHHHHHHhcCCCCcEEEeeeee
Q 008790 86 LEP-IRPHFAIANV--GRGFNMRRTLDFLVKHLGLRTPIILSVVHG 128 (553)
Q Consensus 86 ~e~-~~p~~~ia~~--~~~~~~~~~l~~i~~~~g~~~plig~~~~G 128 (553)
.+. ..|...+.++ +.-.+.+.+++.|......++|++|+.+..
T Consensus 90 ~~~~~~~~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a~~ 135 (198)
T PF08495_consen 90 KSLDSDPSPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSAGD 135 (198)
T ss_pred hhccccCCcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEECCC
Confidence 975 3323333433 444568889999966677799999988865
No 10
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=57.57 E-value=54 Score=35.49 Aligned_cols=81 Identities=15% Similarity=0.271 Sum_probs=54.1
Q ss_pred hhHHHhhhhhcc--cceeeeecCCCChhHHHHHHHHHHHcCCCCCceEEEEEecccC--HHHHHHHHHHhcCCCCcEEEe
Q 008790 49 SWNCVCNSILSR--PRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFN--MRRTLDFLVKHLGLRTPIILS 124 (553)
Q Consensus 49 ~~~~~~~~~~~~--~k~a~~~S~~pd~~~A~~Evv~~~l~e~~~p~~~ia~~~~~~~--~~~~l~~i~~~~g~~~plig~ 124 (553)
.|-......+.. ..+.++..++++-. |-+.++++..-.+++..+=.+-|+. .-+.++.|++.++ +.+||.+
T Consensus 82 ~~~~~v~~~~~~~~~~~~vsvG~~~~d~----er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p-~~~viaG 156 (343)
T TIGR01305 82 EWKAFATNSSPDCLQNVAVSSGSSDNDL----EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFP-EHTIMAG 156 (343)
T ss_pred HHHHHHHhhcccccceEEEEeccCHHHH----HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCC-CCeEEEe
Confidence 355544443332 34556666766654 5555666655678888887778876 6778999999998 5888877
Q ss_pred -eeeeeecccc
Q 008790 125 -VVHGVMGRDA 134 (553)
Q Consensus 125 -~~~Giig~d~ 134 (553)
++.....++.
T Consensus 157 NV~T~e~a~~L 167 (343)
T TIGR01305 157 NVVTGEMVEEL 167 (343)
T ss_pred cccCHHHHHHH
Confidence 7777555444
No 11
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=50.05 E-value=35 Score=37.38 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=67.9
Q ss_pred cccchhhhhcchhHHHhhhhhcccceeeeecCCCC------hhHHHHHHHHHHHcCCCCCceEEEEEec-----ccCHHH
Q 008790 38 KSFASAACVNKSWNCVCNSILSRPRIASACSFKAS------APIALQEVLDKVLLEPIRPHFAIANVGR-----GFNMRR 106 (553)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~k~a~~~S~~pd------~~~A~~Evv~~~l~e~~~p~~~ia~~~~-----~~~~~~ 106 (553)
+.-...+|..-.|+....+++.+|++++..=.+.| -.+.+++++.+++.+-.+|.+..++.+| |=|.+.
T Consensus 39 lvhGp~gCa~~~~~~~~~~~~~~~~~~tt~l~E~div~~~Gg~~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi~~ 118 (427)
T PRK02842 39 LVVGSRTCAHLLQSAAGVMIFAEPRFGTAILEEGDLAGLADANEELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDLEG 118 (427)
T ss_pred EEecCCcchhhhhhhcccEeecCCccceeccCcchhhhcCCcHHHHHHHHHHHHhccCCCCEEEEECCChHHhhcCCHHH
Confidence 45568899998888776688899999652211222 2566777777777766678877776554 577999
Q ss_pred HHHHHHHhcCCCCcEEEeeeeeeec
Q 008790 107 TLDFLVKHLGLRTPIILSVVHGVMG 131 (553)
Q Consensus 107 ~l~~i~~~~g~~~plig~~~~Giig 131 (553)
+.+.++++.+ ++|+|...+.|.-|
T Consensus 119 v~~e~~~~~~-~~pvv~v~t~Gf~g 142 (427)
T PRK02842 119 LAERLSTEFA-GVPVLNYSGSGLET 142 (427)
T ss_pred HHHHhhcccC-CCeEEEeeCCCccc
Confidence 9999988775 69999988888654
No 12
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=48.03 E-value=35 Score=36.85 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=46.7
Q ss_pred cceeeeecCCCChhHHHHHHHHHHHcCCCCCceEEEEEecccC--HHHHHHHHHHhcCCCCcEE-Eeeeeeeeccc
Q 008790 61 PRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFN--MRRTLDFLVKHLGLRTPII-LSVVHGVMGRD 133 (553)
Q Consensus 61 ~k~a~~~S~~pd~~~A~~Evv~~~l~e~~~p~~~ia~~~~~~~--~~~~l~~i~~~~g~~~pli-g~~~~Giig~d 133 (553)
.++.++..++++-. |-+++++.....+++..+=.+-|++ .-+.++.|++.+| +++|| |+++.+...++
T Consensus 97 ~~~~vavG~~~~d~----er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P-~~~vIaGNV~T~e~a~~ 167 (346)
T PRK05096 97 KHVMVSTGTSDADF----EKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWP-DKTICAGNVVTGEMVEE 167 (346)
T ss_pred ceEEEEecCCHHHH----HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCC-CCcEEEecccCHHHHHH
Confidence 45667777777665 4445555545677888887888877 7778999999998 57765 45666654433
No 13
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=46.74 E-value=24 Score=34.11 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=57.2
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchh----HHHhhh----hhc---------ccceeeeecCCCChhHHHHHHHHHHHc
Q 008790 24 CEDVLHNILSRLPAKSFASAACVNKSW----NCVCNS----ILS---------RPRIASACSFKASAPIALQEVLDKVLL 86 (553)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~---------~~k~a~~~S~~pd~~~A~~Evv~~~l~ 86 (553)
.+.||...-.||-+--+-.++=|...= ++-|.- +-+ .-+-+.|+.+||+....+..+++.+|.
T Consensus 12 ~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A~~~l~~al~ 91 (159)
T PF10649_consen 12 IDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAEASAALRRALA 91 (159)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHHHHHHHHHHHh
Confidence 456666666666666666665554321 111111 111 123567788888777777777777776
Q ss_pred CCCCCceEEEEEecccC-----HHHHHHHHHHhcCCCCcEEEeeeee
Q 008790 87 EPIRPHFAIANVGRGFN-----MRRTLDFLVKHLGLRTPIILSVVHG 128 (553)
Q Consensus 87 e~~~p~~~ia~~~~~~~-----~~~~l~~i~~~~g~~~plig~~~~G 128 (553)
++ |+.+|+ ..|- =..+...|.+.+-.++|+++++...
T Consensus 92 ~~--~DLliv---NkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 92 EG--ADLLIV---NKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred cC--CCEEEE---cccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 54 676666 3333 1223344444555589999998765
No 14
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.13 E-value=79 Score=34.26 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=62.0
Q ss_pred ccccchhhhhcchhHHHhhhhhcccceeeeecCCCCh-------hHHHHHHHHHHHcCCCCCceEEEEEe-----cccCH
Q 008790 37 AKSFASAACVNKSWNCVCNSILSRPRIASACSFKASA-------PIALQEVLDKVLLEPIRPHFAIANVG-----RGFNM 104 (553)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~k~a~~~S~~pd~-------~~A~~Evv~~~l~e~~~p~~~ia~~~-----~~~~~ 104 (553)
-+.-...+|..-.|+..=.++++.|++++. +++.+- .+-+++++..+.++- +|.+..+..+ .|-|.
T Consensus 29 ~lvhGp~gC~~~~~~~~~~~~~~~~~~~~t-~l~E~dvv~g~gg~~~L~~aI~ei~~~~-~P~~I~V~sTCv~e~IGDDi 106 (396)
T cd01979 29 FLVVGTKTCAHFLQNALGVMIFAEPRFAMA-ELEEGDLSALLNDYAELDRVVTQIKRDR-NPSVIFLIGSCTTEVIKMDL 106 (396)
T ss_pred eEeecchhHHHHHHhhhccEeecCCcceee-ecCchhhhhccCchHHHHHHHHHHHHhc-CCCEEEEECCCHHHHHhcCH
Confidence 356678999988888644477788999765 554444 234555555555543 3775555444 35779
Q ss_pred HHHHHHHHHhcCCCCcEEEeeeeeeec
Q 008790 105 RRTLDFLVKHLGLRTPIILSVVHGVMG 131 (553)
Q Consensus 105 ~~~l~~i~~~~g~~~plig~~~~Giig 131 (553)
+.+.+.++++. ++|+|...+.|.-|
T Consensus 107 ~~v~~~~~~~~--~~pvi~v~t~gf~g 131 (396)
T cd01979 107 EGAAPRLSAEI--GVPILVASASGLDY 131 (396)
T ss_pred HHHHHHHhhcC--CCcEEEeeCCCccc
Confidence 99988888764 48999999888644
No 15
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=37.59 E-value=33 Score=39.65 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=29.1
Q ss_pred EEEEEecc---cCHHHHHHHHHHhcCC----CCcEEEeeeee
Q 008790 94 AIANVGRG---FNMRRTLDFLVKHLGL----RTPIILSVVHG 128 (553)
Q Consensus 94 ~ia~~~~~---~~~~~~l~~i~~~~g~----~~plig~~~~G 128 (553)
-|.|=+|| ||++++...|+++.++ +|-+.||..+|
T Consensus 518 yISCPsCGRTLfDLq~tta~Ik~~t~HLkGlkI~IMGCIVNG 559 (611)
T PRK02048 518 YISCPGCGRTLYDLQSTIARIKEATSHLKGLKIGIMGCIVNG 559 (611)
T ss_pred EEECCCCCcchhhHHHHHHHHHHHhCCCCCceEEEEEeEecC
Confidence 35677788 9999999999998876 46688898888
No 16
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=37.42 E-value=1.3e+02 Score=26.29 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=39.7
Q ss_pred eeeeecCCCChhHHHHHHHHHHHcCC------CCCceEEEEEecccC-----HHHHHHHHHHhcCCCCcEEEeee
Q 008790 63 IASACSFKASAPIALQEVLDKVLLEP------IRPHFAIANVGRGFN-----MRRTLDFLVKHLGLRTPIILSVV 126 (553)
Q Consensus 63 ~a~~~S~~pd~~~A~~Evv~~~l~e~------~~p~~~ia~~~~~~~-----~~~~l~~i~~~~g~~~plig~~~ 126 (553)
+++|.+-. .+.+.+|+.+||.-| ....=+|+++..+-| .+++.+.|+++++.++.+|=++.
T Consensus 5 iGiG~a~G---~~r~~~Av~~Al~spLl~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 5 IGIGEASG---ENRAEEAVEQALNSPLLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp EEEEEEES---TTHHHHHHHHHHTSTTSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred EEEEEECC---ccHHHHHHHHHHhCccccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 44555543 344555555555532 667778888888755 77889999999998888875543
No 17
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=36.70 E-value=30 Score=38.14 Aligned_cols=100 Identities=20% Similarity=0.168 Sum_probs=59.4
Q ss_pred chhhhhcchhHHHhhhhhcccceeeeecCCCChhHHHHHHHHHHHcCCCC-CceEEEEEeccc----C---HHHHHHHHH
Q 008790 41 ASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIR-PHFAIANVGRGF----N---MRRTLDFLV 112 (553)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~k~a~~~S~~pd~~~A~~Evv~~~l~e~~~-p~~~ia~~~~~~----~---~~~~l~~i~ 112 (553)
-.-=|++|||+|-||.+..+.. ....+-.+|+.+=+......... ..+.=+++|-|= + ++.+++.|+
T Consensus 40 HiPFC~~~C~YC~fn~~~~~~~-----~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~ 114 (416)
T COG0635 40 HIPFCVSKCPYCDFNSHVTKRG-----QPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALR 114 (416)
T ss_pred EcccccccCCCCCCeeeccCCC-----ChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHH
Confidence 3456999999999999877654 11111234444444444444322 356666888882 2 899999999
Q ss_pred HhcCCCCcEEEeeeeeeeccccccccccccccccccccc
Q 008790 113 KHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIG 151 (553)
Q Consensus 113 ~~~g~~~plig~~~~Giig~d~~~~e~~~~~~~~~~~~~ 151 (553)
+.++...| +-+|+-++-.+.+...+|..+..-|
T Consensus 115 ~~~~~~~~------~~EitiE~nP~~~~~e~~~~l~~~G 147 (416)
T COG0635 115 ELFNDLDP------DAEITIEANPGTVEAEKFKALKEAG 147 (416)
T ss_pred HhcccCCC------CceEEEEeCCCCCCHHHHHHHHHcC
Confidence 98851122 2455555545555555544444444
No 18
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=32.49 E-value=46 Score=38.32 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=27.5
Q ss_pred EEEEecc---cCHHHHHHHHHHhcCC----CCcEEEeeeee
Q 008790 95 IANVGRG---FNMRRTLDFLVKHLGL----RTPIILSVVHG 128 (553)
Q Consensus 95 ia~~~~~---~~~~~~l~~i~~~~g~----~~plig~~~~G 128 (553)
|+|=+|| ||++++.+.|+++.++ .+.+.||..+|
T Consensus 511 isCP~CgRtlfdlq~t~~~i~~~t~Hl~g~kIaiMGCiVNG 551 (606)
T PRK00694 511 ISCPGCGRTLFDLLEVTQRIRERTQHLPGLKIAVMGCIVNG 551 (606)
T ss_pred EECCCCCceeehHHHHHHHHHHHhccCCCceEEEEEeEecC
Confidence 5677888 9999999999998875 34567787777
No 19
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=30.84 E-value=1.7e+02 Score=28.58 Aligned_cols=67 Identities=25% Similarity=0.302 Sum_probs=44.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCCCccccccccCccCCCceeEEEEEEeCCCCcCCCCCCccchHhH
Q 008790 415 KTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPF 494 (553)
Q Consensus 415 ~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~~~~~~~~~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v 494 (553)
.+...+..+.++.+++..--+.++..+++|+++ +..|- +++.=.|=|+.|| +
T Consensus 31 ~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-----------------Gf~PD--vI~~H~GWGe~Lf---------l 82 (171)
T PF12000_consen 31 GPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQ-----------------GFVPD--VIIAHPGWGETLF---------L 82 (171)
T ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHHHHHHc-----------------CCCCC--EEEEcCCcchhhh---------H
Confidence 445556668888888776444455555555442 34453 5666678887775 8
Q ss_pred HhhCCCCceeeeecc
Q 008790 495 FENFPSAPLAGIFCG 509 (553)
Q Consensus 495 ~e~Lg~vPlaGFy~~ 509 (553)
++.||++|+++++-+
T Consensus 83 kdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 83 KDVFPDAPLIGYFEF 97 (171)
T ss_pred HHhCCCCcEEEEEEE
Confidence 999999999997643
No 20
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=30.36 E-value=30 Score=37.61 Aligned_cols=30 Identities=37% Similarity=0.509 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCccccchhhhhcchhHHHh
Q 008790 25 EDVLHNILSRLPAKSFASAACVNKSWNCVC 54 (553)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (553)
|.+.+|||+-|-|+|+-++-=|||+|.++-
T Consensus 84 ~hi~e~ilsyld~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 84 DHIAENILSYLDALSLCACELVCKEWKRVL 113 (499)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHh
Confidence 789999999999999999999999999764
No 21
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=27.29 E-value=62 Score=38.18 Aligned_cols=68 Identities=25% Similarity=0.373 Sum_probs=45.3
Q ss_pred CCCceEEEEEecc---cCHHHHHHHHHHhcCC----CCcEEEeeeeeeeccccccccccccccccccccccccccccccc
Q 008790 89 IRPHFAIANVGRG---FNMRRTLDFLVKHLGL----RTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQ 161 (553)
Q Consensus 89 ~~p~~~ia~~~~~---~~~~~~l~~i~~~~g~----~~plig~~~~Giig~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 161 (553)
-+|. .|+|=+|| ||++++.+.|+++.++ .+.+.||+.+| ..| ...+|+
T Consensus 630 ~kte-~isCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNG-------PGE--------------madAd~--- 684 (733)
T PLN02925 630 TKTE-YVSCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNG-------PGE--------------MADADF--- 684 (733)
T ss_pred cCCe-EEECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecC-------Ccc--------------cccccc---
Confidence 4443 35688888 9999999999998654 35577777777 223 236777
Q ss_pred ccceEEeecccCCCccccccccccccccc
Q 008790 162 QSGIVLTVGYLPGLKVDAIPLLRRKEIVQ 190 (553)
Q Consensus 162 ~~gi~l~~G~~pgl~v~~~pl~~~~~~~~ 190 (553)
|+ ||.-|| |++ |.+-++++-
T Consensus 685 --Gy---VG~gpg-KI~---LYvgKecV~ 704 (733)
T PLN02925 685 --GY---VGGAPG-KID---LYVGKEVVK 704 (733)
T ss_pred --ce---eccCCC-eeE---EEecceehh
Confidence 77 777777 554 455555443
No 22
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=26.53 E-value=1.1e+02 Score=33.65 Aligned_cols=44 Identities=23% Similarity=0.137 Sum_probs=35.0
Q ss_pred CceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCC
Q 008790 466 KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 514 (553)
Q Consensus 466 ~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~Lg~vPlaGFy~~GEIgP 514 (553)
.++-.+++|+|--|=. ...=++++++.+|+++++|.=+.|||-|
T Consensus 29 ~~~~~~~ifF~~~~~~-----~~~l~~~l~~~~pg~~liGCSTaGeitp 72 (379)
T COG3287 29 DRSDFVLIFFSPERDE-----HVQLASALKQAFPGICLIGCSTAGEITP 72 (379)
T ss_pred CCCCeEEEEecccccc-----HHHHHHHHHhhCCCCeEeccccCceEcc
Confidence 4577889888855432 1235789999999999999999999998
No 23
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=26.44 E-value=6.2e+02 Score=27.37 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=54.7
Q ss_pred cchhhhhcchhHHHhhhhhcccc---eeeeecCCCChhHHHHHHHHHHHcCC-------CCCceEEEEEecccC-----H
Q 008790 40 FASAACVNKSWNCVCNSILSRPR---IASACSFKASAPIALQEVLDKVLLEP-------IRPHFAIANVGRGFN-----M 104 (553)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~k---~a~~~S~~pd~~~A~~Evv~~~l~e~-------~~p~~~ia~~~~~~~-----~ 104 (553)
+-+-+.+|-.|+.+.+ ||+... +++|-....+.-..+.+|+++++..| ..+.=+|+.+..+-+ .
T Consensus 206 ir~~g~iNvDf~dv~~-vl~~~G~a~iG~g~~~g~~~~~r~~~A~~~al~~pLl~~~~i~~A~~~Lv~i~~~~~l~l~ev 284 (349)
T TIGR00065 206 ITKPGLINIDFADVRA-VMSGGGVAMMGIGEALGEDTANRAFEAVRKALSSPLLDVDKISGAKGALVHITGGADLTLLEA 284 (349)
T ss_pred hccCCcCcCCHHHHHH-HHhcCCeEEEEEEEecCCcchHHHHHHHHHHHhCCCcCCcccccccEEEEEEEcCCCCCHHHH
Confidence 3455778888888864 677664 44455544443235677777777654 233446667777644 7
Q ss_pred HHHHHHHHHhcCCCCcEEEee
Q 008790 105 RRTLDFLVKHLGLRTPIILSV 125 (553)
Q Consensus 105 ~~~l~~i~~~~g~~~plig~~ 125 (553)
.++.+.|++.++.++-+|-++
T Consensus 285 ~~~~~~i~~~~~~~~~Ii~G~ 305 (349)
T TIGR00065 285 EEIQEIITSELDQDANIIWGA 305 (349)
T ss_pred HHHHHHHHHhcCCCCeEEEEE
Confidence 788899999888666665443
No 24
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=23.59 E-value=3e+02 Score=29.68 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=61.8
Q ss_pred cchhHHHhhhhhcccc----eeeeecCC---CChhHHHHHHHHHHHcCCCCCceEEEEEecccCHHHHHHHHHHhcCCCC
Q 008790 47 NKSWNCVCNSILSRPR----IASACSFK---ASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFLVKHLGLRT 119 (553)
Q Consensus 47 ~~~~~~~~~~~~~~~k----~a~~~S~~---pd~~~A~~Evv~~~l~e~~~p~~~ia~~~~~~~~~~~l~~i~~~~g~~~ 119 (553)
+++|.+.-..+.+|.+ +--|-|.. .---+++.|...|+-+- -++++..++.+++=-|+.++-.+.. ++.+.
T Consensus 131 ~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~-~~fD~vVva~gs~gT~AGl~~g~~~-~~~~~ 208 (323)
T COG2515 131 NASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQL-LKFDSVVVAPGSGGTHAGLLVGLAQ-LGPDV 208 (323)
T ss_pred chhhHHHHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhc-cCCCEEEEeCCCcchHHHHHHHhhh-ccCCC
Confidence 6788888888888876 33333333 45568899999988755 7888888888888788888888855 77789
Q ss_pred cEEEeeeee
Q 008790 120 PIILSVVHG 128 (553)
Q Consensus 120 plig~~~~G 128 (553)
++|||.+.+
T Consensus 209 ~ViG~~v~~ 217 (323)
T COG2515 209 EVIGIDVSA 217 (323)
T ss_pred ceEEEeecC
Confidence 999999887
No 25
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=21.29 E-value=51 Score=36.02 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.9
Q ss_pred ccHHHHHHHHhhcCcc-ccchhhhhcchhHHHhh
Q 008790 23 DCEDVLHNILSRLPAK-SFASAACVNKSWNCVCN 55 (553)
Q Consensus 23 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 55 (553)
-.+|||..|.+|||.. =..-..+||++|+..-.
T Consensus 7 Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 7 LPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 3689999999999764 46777899999998544
No 26
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=20.86 E-value=5.8e+02 Score=26.68 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=47.0
Q ss_pred hhhhcchhHHHhhhhhcccc---eeeeecCCCChhHHHHHHHHHHHcCC-------CCCceEEEEEecccC-----HHHH
Q 008790 43 AACVNKSWNCVCNSILSRPR---IASACSFKASAPIALQEVLDKVLLEP-------IRPHFAIANVGRGFN-----MRRT 107 (553)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~k---~a~~~S~~pd~~~A~~Evv~~~l~e~-------~~p~~~ia~~~~~~~-----~~~~ 107 (553)
-+-+|-.++.+. .+|+... ++.|.... ...+.+|++++|..| ....-+|+.+..+-+ .+++
T Consensus 193 ~g~invD~~dv~-~vl~~~G~a~ig~g~~~g---~~r~~~Av~~Al~~pLl~~~~i~~A~~~Lv~I~~~~~l~l~e~~~~ 268 (304)
T cd02201 193 PGLINLDFADVK-TVMKNKGVALMGIGEASG---ENRAIEAAEKAISSPLLEDDSISGAKGVLVNITGGSDLTLEEVNEA 268 (304)
T ss_pred CccccCCHHHHH-HHhccCCeEEEEEEEecC---chHHHHHHHHHHhCcCcCCCChhcccEEEEEEEcCCCCCHHHHHHH
Confidence 344666666654 4566554 33333332 234566666665543 345667777777644 7788
Q ss_pred HHHHHHhcCCCCcEEEe
Q 008790 108 LDFLVKHLGLRTPIILS 124 (553)
Q Consensus 108 l~~i~~~~g~~~plig~ 124 (553)
.+.|++.++.++.+|-+
T Consensus 269 ~~~i~~~~~~~~~ii~G 285 (304)
T cd02201 269 AEIIKEKVDPDANIIFG 285 (304)
T ss_pred HHHHHHHhCCCCeEEEe
Confidence 89999988866666543
No 27
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=20.22 E-value=3.9e+02 Score=30.31 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=60.6
Q ss_pred HhhcCccccchh------hhhcchhHHHhhhhhc---ccceeeeecCCCChh----HHHHHHHHHHHcCCCCCceEEEEE
Q 008790 32 LSRLPAKSFASA------ACVNKSWNCVCNSILS---RPRIASACSFKASAP----IALQEVLDKVLLEPIRPHFAIANV 98 (553)
Q Consensus 32 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~k~a~~~S~~pd~~----~A~~Evv~~~l~e~~~p~~~ia~~ 98 (553)
|+.+|.+....- .+....|.+-..+... ...+|.|+.-.+++. ..+.+++.+.+.+...++.-+..+
T Consensus 335 lkNiPVl~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~Alal~g~~~~~f~~iq~lA~~i~~~~~~~~~~~~Plivv 414 (473)
T PF06277_consen 335 LKNIPVLKPSLEEEEESFEELAEAIREALEWFDLEGEDQPVALALPGKPNPSFAEIQELAEAIAEGMAELINPDQPLIVV 414 (473)
T ss_pred cCCCcEEeeccchhhcchHHHHHHHHHHHHhhcccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 566777765543 5777788887777655 567899998876543 444555556666655555333322
Q ss_pred ecccCHHHHHHH-HHHhcCCCCcEEEeeeeeeec
Q 008790 99 GRGFNMRRTLDF-LVKHLGLRTPIILSVVHGVMG 131 (553)
Q Consensus 99 ~~~~~~~~~l~~-i~~~~g~~~plig~~~~Giig 131 (553)
..-|+.+.|.. |+.+++...||| |-++|-.
T Consensus 415 -~e~D~aKvLGq~l~~~l~~~~~li--cID~I~v 445 (473)
T PF06277_consen 415 -VEQDMAKVLGQTLQALLPKKRPLI--CIDQIKV 445 (473)
T ss_pred -ECchHHHHHHHHHHHhcCCCCCEE--EEeeEEc
Confidence 34477777665 455578778887 3455443
Done!