Query 008790
Match_columns 553
No_of_seqs 164 out of 293
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 97.1 0.00021 7.3E-09 53.9 2.6 33 23-55 12-44 (53)
2 2e31_A FBS1, F-box only protei 95.4 0.0055 1.9E-07 62.7 2.2 34 22-55 53-87 (297)
3 1p22_A F-BOX/WD-repeat protein 91.9 0.057 1.9E-06 54.9 2.0 30 26-55 21-50 (435)
4 3v7d_B Cell division control p 91.2 0.071 2.4E-06 54.1 1.9 33 24-56 19-51 (464)
5 2ovr_B FBW7, F-BOX/WD repeat p 87.4 0.19 6.4E-06 51.0 1.7 32 24-55 23-54 (445)
6 3l2o_B F-box only protein 4; s 84.5 0.32 1.1E-05 49.9 1.7 33 24-56 9-41 (312)
7 2ast_B S-phase kinase-associat 82.9 0.43 1.5E-05 46.8 1.8 33 23-55 12-44 (336)
8 3ogk_B Coronatine-insensitive 80.1 0.5 1.7E-05 50.1 1.2 42 14-55 7-49 (592)
9 2p1m_B Transport inhibitor res 76.6 1.7 5.8E-05 45.9 4.0 33 24-56 10-43 (594)
10 2gzm_A Glutamate racemase; enz 30.8 1E+02 0.0034 30.0 7.2 74 25-124 16-95 (267)
11 2oho_A Glutamate racemase; iso 27.8 51 0.0017 32.3 4.4 84 15-124 14-104 (273)
12 3out_A Glutamate racemase; str 26.7 1.1E+02 0.0037 30.1 6.6 73 26-123 21-99 (268)
13 4af0_A Inosine-5'-monophosphat 25.8 77 0.0026 34.9 5.7 58 59-123 268-327 (556)
14 1zuw_A Glutamate racemase 1; ( 25.2 1.3E+02 0.0045 29.3 6.9 76 24-125 15-97 (272)
15 3aek_A Light-independent proto 23.8 1.7E+02 0.0056 30.7 7.7 89 38-131 57-161 (437)
16 3r12_A Deoxyribose-phosphate a 21.1 96 0.0033 30.9 4.9 113 13-128 44-168 (260)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.11 E-value=0.00021 Score=53.86 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=31.0
Q ss_pred ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790 23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN 55 (553)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (553)
-.+|++.+||++||....+.++||||.|+.+++
T Consensus 12 LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999886
No 2
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=95.36 E-value=0.0055 Score=62.67 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=31.3
Q ss_pred cccHHHHHHHHhhcCccccc-hhhhhcchhHHHhh
Q 008790 22 ADCEDVLHNILSRLPAKSFA-SAACVNKSWNCVCN 55 (553)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 55 (553)
...+|||..||+|||+.+.+ .++||||.|+.+.+
T Consensus 53 ~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 53 ELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp SSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 34789999999999999999 99999999998875
No 3
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.87 E-value=0.057 Score=54.95 Aligned_cols=30 Identities=43% Similarity=0.555 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790 26 DVLHNILSRLPAKSFASAACVNKSWNCVCN 55 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (553)
+|+..||+.|++.+++.++||||.|+.+++
T Consensus 21 ~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 21 HIAENILSYLDAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 499999999999999999999999998775
No 4
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.19 E-value=0.071 Score=54.12 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=31.0
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56 (553)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (553)
.++|+..||+.||+.+++.+++|||.||++++.
T Consensus 19 p~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 19 PFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999875
No 5
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=87.35 E-value=0.19 Score=51.01 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=30.1
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCN 55 (553)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (553)
.++++..||+.|++.+.+.++||||.|+.+|+
T Consensus 23 p~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 23 PKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence 58999999999999999999999999999886
No 6
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=84.54 E-value=0.32 Score=49.93 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=30.8
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008790 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56 (553)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (553)
..|++++||+-|++...+.++||||.|+.+++.
T Consensus 9 P~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 9 PIDVQLYILSFLSPHDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTC
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999999999874
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=82.93 E-value=0.43 Score=46.76 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=30.8
Q ss_pred ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008790 23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN 55 (553)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (553)
-.+|++..|++.||......++.|||.|+.+|.
T Consensus 12 LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp SCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999983
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=80.06 E-value=0.5 Score=50.11 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=33.2
Q ss_pred ceEEeecccccHHHHHHHHhhc-CccccchhhhhcchhHHHhh
Q 008790 14 KTIEISSLADCEDVLHNILSRL-PAKSFASAACVNKSWNCVCN 55 (553)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 55 (553)
|.+..++..-.+|++..||+.| |....+.++.|||+|+.+..
T Consensus 7 ~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 7 KRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp -----CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred hhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence 4456666677899999999999 89999999999999999853
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=76.57 E-value=1.7 Score=45.93 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=29.5
Q ss_pred cHHHHHHHHhhcC-ccccchhhhhcchhHHHhhh
Q 008790 24 CEDVLHNILSRLP-AKSFASAACVNKSWNCVCNS 56 (553)
Q Consensus 24 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 56 (553)
.+|+++.||++|| ....+.++.|||+|+.++..
T Consensus 10 PdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 10 PEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhh
Confidence 5899999999999 77889999999999999543
No 10
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=30.81 E-value=1e+02 Score=30.03 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCccccchhhhh------cchhHHHhhhhhcccceeeeecCCCChhHHHHHHHHHHHcCCCCCceEEEEE
Q 008790 25 EDVLHNILSRLPAKSFASAACV------NKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANV 98 (553)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~k~a~~~S~~pd~~~A~~Evv~~~l~e~~~p~~~ia~~ 98 (553)
=.+++.|.+++|+-.+.+-+=. .|+|..+-. ...++++.+..+. +-.+++
T Consensus 16 ltv~~~i~~~lP~~~~iy~~D~~~~Pyg~~s~~~i~~--------------------~~~~~~~~L~~~g----~d~ivi 71 (267)
T 2gzm_A 16 LTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQ--------------------FTWEMTEHLLDLN----IKMLVI 71 (267)
T ss_dssp HHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHH--------------------HHHHHHHHHHTTT----CSEEEE
T ss_pred HHHHHHHHHHCCCCCEEEecCCCCCCCCCCCHHHHHH--------------------HHHHHHHHHHHCC----CCEEEE
Confidence 4678899999999988773322 455554332 2556666655432 334567
Q ss_pred ecccCHHHHHHHHHHhcCCCCcEEEe
Q 008790 99 GRGFNMRRTLDFLVKHLGLRTPIILS 124 (553)
Q Consensus 99 ~~~~~~~~~l~~i~~~~g~~~plig~ 124 (553)
+|...+...++.|++.++ +|+||-
T Consensus 72 aCNTas~~~l~~lr~~~~--iPvigi 95 (267)
T 2gzm_A 72 ACNTATAVVLEEMQKQLP--IPVVGV 95 (267)
T ss_dssp CCHHHHHHHHHHHHHHCS--SCEEES
T ss_pred eCchhhHHHHHHHHHhCC--CCEEee
Confidence 777677667999999885 999984
No 11
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=27.84 E-value=51 Score=32.28 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=55.1
Q ss_pred eEEee-cccccHHHHHHHHhhcCccccchhhhh------cchhHHHhhhhhcccceeeeecCCCChhHHHHHHHHHHHcC
Q 008790 15 TIEIS-SLADCEDVLHNILSRLPAKSFASAACV------NKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLE 87 (553)
Q Consensus 15 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~k~a~~~S~~pd~~~A~~Evv~~~l~e 87 (553)
+|=|= |-.-.-++++.|.+++|+-.+.+-+-. .|+| .+..+...++++.+..+
T Consensus 14 ~IGv~DsG~Ggltv~~~i~~~~P~~~~iy~~D~~~~Pyg~~s~--------------------~~i~~~~~~~~~~L~~~ 73 (273)
T 2oho_A 14 PIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPK--------------------KQIKEYTWELVNFLLTQ 73 (273)
T ss_dssp CEEEEESSSTTHHHHHHHHHHCTTCCEEEEECGGGCCCTTSCH--------------------HHHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCcHHHHHHHHHHHCCCCCEEEEeCCCCCCCCCCCH--------------------HHHHHHHHHHHHHHHHC
Confidence 46554 545568899999999999987764322 2333 23345555566555433
Q ss_pred CCCCceEEEEEecccCHHHHHHHHHHhcCCCCcEEEe
Q 008790 88 PIRPHFAIANVGRGFNMRRTLDFLVKHLGLRTPIILS 124 (553)
Q Consensus 88 ~~~p~~~ia~~~~~~~~~~~l~~i~~~~g~~~plig~ 124 (553)
.+-.++++|...+.-.++.|++.++ +|+||-
T Consensus 74 ----g~d~iviaCNTas~~~l~~lr~~~~--iPvigi 104 (273)
T 2oho_A 74 ----NVKMIVFACNTATAVAWEEVKAALD--IPVLGV 104 (273)
T ss_dssp ----TCSEEEECCHHHHHHHHHHHHHHCS--SCEEES
T ss_pred ----CCCEEEEeCchHhHHHHHHHHHhCC--CCEEec
Confidence 2334566777667667899999875 999984
No 12
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=26.72 E-value=1.1e+02 Score=30.12 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCccccchhhhh------cchhHHHhhhhhcccceeeeecCCCChhHHHHHHHHHHHcCCCCCceEEEEEe
Q 008790 26 DVLHNILSRLPAKSFASAACV------NKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVG 99 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~k~a~~~S~~pd~~~A~~Evv~~~l~e~~~p~~~ia~~~ 99 (553)
-++..|++.||.-.+.+.+=. .|+|..+-.+++ ++++.+..+. .-+++++
T Consensus 21 tv~~~i~~~lp~~~~iy~~D~a~~PYG~~~~~~i~~~~~--------------------~~~~~L~~~g----~~~iVIA 76 (268)
T 3out_A 21 TIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAA--------------------QTAKFLIDQE----VKAIIIA 76 (268)
T ss_dssp HHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHH--------------------HHHHHHHHTT----CSEEEEC
T ss_pred HHHHHHHHHCCCCcEEEecCCCCCCCCCCCHHHHHHHHH--------------------HHHHHHHHCC----CCEEEEe
Confidence 468889999999988775543 488887765543 4555555443 3355667
Q ss_pred cccCHHHHHHHHHHhcCCCCcEEE
Q 008790 100 RGFNMRRTLDFLVKHLGLRTPIIL 123 (553)
Q Consensus 100 ~~~~~~~~l~~i~~~~g~~~plig 123 (553)
|.-.+...++.|++.++ ++|+||
T Consensus 77 CNTa~~~al~~lr~~~~-~iPvig 99 (268)
T 3out_A 77 CNTISAIAKDIVQEIAK-AIPVID 99 (268)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCEEE
T ss_pred CCChHHHHHHHHHHhcC-CCCEEe
Confidence 77677778899999995 499998
No 13
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=25.83 E-value=77 Score=34.91 Aligned_cols=58 Identities=7% Similarity=0.074 Sum_probs=37.5
Q ss_pred cccceeeeecCCCChhHHHHHHHHHHHcCCCCCceEEEEEecccC--HHHHHHHHHHhcCCCCcEEE
Q 008790 59 SRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFN--MRRTLDFLVKHLGLRTPIIL 123 (553)
Q Consensus 59 ~~~k~a~~~S~~pd~~~A~~Evv~~~l~e~~~p~~~ia~~~~~~~--~~~~l~~i~~~~g~~~plig 123 (553)
.|.+++.|..+++|..+=++.. ++. ..++..+=.+-|+. .-+.++.|++.++ ++|||+
T Consensus 268 grL~VgAAVgv~~d~~eR~~aL----v~A--GvD~iviD~ahGhs~~v~~~i~~ik~~~p-~~~via 327 (556)
T 4af0_A 268 KQLYCGAAIGTRPGDKDRLKLL----AEA--GLDVVVLDSSQGNSVYQIEFIKWIKQTYP-KIDVIA 327 (556)
T ss_dssp CCBCCEEEECSSHHHHHHHHHH----HHT--TCCEEEECCSCCCSHHHHHHHHHHHHHCT-TSEEEE
T ss_pred hceeeEEEeccCccHHHHHHHH----Hhc--CCcEEEEeccccccHHHHHHHHHHHhhCC-cceEEe
Confidence 3556788888888755443322 222 23555554455655 7788999999887 688875
No 14
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=25.22 E-value=1.3e+02 Score=29.32 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=51.6
Q ss_pred cHHHHHHHHhhcCccccchhhhh------cchhHHHhhhhhcccceeeeecCCCChhHHHHHHHHHHHc-CCCCCceEEE
Q 008790 24 CEDVLHNILSRLPAKSFASAACV------NKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLL-EPIRPHFAIA 96 (553)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~k~a~~~S~~pd~~~A~~Evv~~~l~-e~~~p~~~ia 96 (553)
.=++++.|.+++|+-.+.+-+-. .|+|..+-.+ ..++++.+.. +. +-.+
T Consensus 15 Gltv~~~i~~~lP~~~~iy~~D~~~~PyG~~s~~~i~~~--------------------~~~~~~~L~~~~g----~d~i 70 (272)
T 1zuw_A 15 GLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQY--------------------TWELTNYLLENHH----IKML 70 (272)
T ss_dssp THHHHHHHHHHSTTCCEEEEECGGGCCCSSSCHHHHHHH--------------------HHHHHHHHHHHSC----CSEE
T ss_pred hHHHHHHHHHhCCCCcEEEeccCCCCCCCCCCHHHHHHH--------------------HHHHHHHHHhhcC----CCEE
Confidence 45789999999999987755443 4566654443 3556666655 43 2345
Q ss_pred EEecccCHHHHHHHHHHhcCCCCcEEEee
Q 008790 97 NVGRGFNMRRTLDFLVKHLGLRTPIILSV 125 (553)
Q Consensus 97 ~~~~~~~~~~~l~~i~~~~g~~~plig~~ 125 (553)
+++|.-.+...++.+++.++ +|+||-+
T Consensus 71 ViACNTas~~~l~~lr~~~~--iPVigii 97 (272)
T 1zuw_A 71 VIACNTATAIALDDIQRSVG--IPVVGVI 97 (272)
T ss_dssp EECCHHHHHHHHHHHHHHCS--SCEEESH
T ss_pred EEeCchhhHHHHHHHHHHCC--CCEEccc
Confidence 66666666667999999885 9999843
No 15
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=23.85 E-value=1.7e+02 Score=30.67 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=61.7
Q ss_pred cccchhhhhcchhHHHhhhhhcccceeeeecCCCChhH---------HHHHHHHHHHcCCCCCce--EEEEEe-----cc
Q 008790 38 KSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPI---------ALQEVLDKVLLEPIRPHF--AIANVG-----RG 101 (553)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~k~a~~~S~~pd~~~---------A~~Evv~~~l~e~~~p~~--~ia~~~-----~~ 101 (553)
+.-.+.+|..-.|+..=.+....|++.+ ++=+..+ =+++++..+. .-+|.+ ..++.+ +|
T Consensus 57 ivHGp~GC~~~~~~~~~~~~~~ep~~~s---T~l~E~diV~~fGg~~kL~~aI~~~~--~~~P~~~~I~V~tTC~~e~IG 131 (437)
T 3aek_A 57 LVVGSRTCAHLLQAAAGVMIFAEPRFGT---AVLEEQDLAGLADAHKELDREVAKLL--ERRPDIRQLFLVGSCPSEVLK 131 (437)
T ss_dssp EEEECHHHHHHHHHHHGGGGGSCCSEEE---EECCGGGGSSSCCHHHHHHHHHHHHH--HTCTTCCEEEEEECHHHHHTT
T ss_pred EEECCchhhhhhhhhhhhhccCCCccee---ecccchhhhhcCCCHHHHHHHHHHHH--HhCCCccEEEEEcCCHHHHhh
Confidence 4447889999999964456667776543 2222222 2455666665 568888 666554 46
Q ss_pred cCHHHHHHHHHHhcCCCCcEEEeeeeeeec
Q 008790 102 FNMRRTLDFLVKHLGLRTPIILSVVHGVMG 131 (553)
Q Consensus 102 ~~~~~~l~~i~~~~g~~~plig~~~~Giig 131 (553)
=|++.+.+.++++++.++|+|..-+.|.-|
T Consensus 132 dDi~~v~~~~~~~~~~~~pVi~v~t~gf~g 161 (437)
T 3aek_A 132 LDLDRAAERLSGLHAPHVRVYSYTGSGLDT 161 (437)
T ss_dssp CCHHHHHHHHHHHSTTTCEEEEEECCTTTC
T ss_pred cCHHHHHHHHHHhcCCCCeEEEeECCCCCC
Confidence 789999999999886569999999998543
No 16
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=21.15 E-value=96 Score=30.86 Aligned_cols=113 Identities=13% Similarity=0.186 Sum_probs=65.2
Q ss_pred cceEEeeccc--ccHHHHHHHHhhcCccccchhhhhcchhHHHhhhhhc--ccceee--eecCCCChhHHHHHHHHHHHc
Q 008790 13 KKTIEISSLA--DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSILS--RPRIAS--ACSFKASAPIALQEVLDKVLL 86 (553)
Q Consensus 13 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~a~--~~S~~pd~~~A~~Evv~~~l~ 86 (553)
-+.|.-+.|. .+++=++++....=...|+ |-||+++|-+.|.+.|. ..|+++ +|.+-+++.++-..=+++++.
T Consensus 44 a~~IDhTlL~p~~t~~~I~~lc~eA~~~~~a-aVCV~p~~V~~a~~~L~gs~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~ 122 (260)
T 3r12_A 44 KSAIEHTNLKPFATPDDIKKLCLEARENRFH-GVCVNPCYVKLAREELEGTDVKVVTVVGFPLGANETRTKAHEAIFAVE 122 (260)
T ss_dssp HHHEEEEECCTTCCHHHHHHHHHHHHHTTCS-EEEECGGGHHHHHHHHTTSCCEEEEEESTTTCCSCHHHHHHHHHHHHH
T ss_pred HHhcCcccCCCCCCHHHHHHHHHHHHhcCCc-EEEECHHHHHHHHHHhcCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 4455555542 3344444444443333443 56999999999999994 356655 888888776665555566666
Q ss_pred CCCCCceEEE-EEec----ccC-HHHHHHHHHHhcCCCCcEEEeeeee
Q 008790 87 EPIRPHFAIA-NVGR----GFN-MRRTLDFLVKHLGLRTPIILSVVHG 128 (553)
Q Consensus 87 e~~~p~~~ia-~~~~----~~~-~~~~l~~i~~~~g~~~plig~~~~G 128 (553)
.... -..++ +++. .|+ ...-+..|++..+ +.||=+-.-.|
T Consensus 123 ~GAd-EIDmViNig~lk~g~~~~v~~eI~~v~~a~~-~~~lKVIlEt~ 168 (260)
T 3r12_A 123 SGAD-EIDMVINVGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETC 168 (260)
T ss_dssp HTCS-EEEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGG
T ss_pred cCCC-EEEEEeehhhhccccHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 5422 23333 4432 233 4455666666555 56665444444
Done!