BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008791
         (553 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P12111|CO6A3_HUMAN Collagen alpha-3(VI) chain OS=Homo sapiens GN=COL6A3 PE=1 SV=5
          Length = 3177

 Score = 35.8 bits (81), Expect = 0.92,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 82/237 (34%), Gaps = 43/237 (18%)

Query: 270  GKESKDGKNGKDGKKG----SKENNKGGKKKDEGSRKDKNGGKSGGGGFFGFGKKKGGED 325
            G+   DG +G+DG KG    S E    G++ D+G R +K  G+ G  G  G     G + 
Sbjct: 2107 GEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEK--GERGDVGIRGDPGNPGQDS 2164

Query: 326  KKNG-KSSGGFLGFGKKDKGSGDSGNKNGKNGSGAGGKNK---------GNGPKKGGGKN 375
            ++ G K   G LG        G  G      G G  GKN            G K G G+ 
Sbjct: 2165 QERGPKGETGDLG------PMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQP 2218

Query: 376  EYDG------------------VLDMKKMKDDVFDFDVPKANHGGKGGKANGHGGGAKNM 417
             ++G                  ++  + +           A          G  G     
Sbjct: 2219 GFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEP 2278

Query: 418  GPMGPMSQMGPMSQMGPMRSMGQMGNYPMGQMGNYPTGQMGGFPAVQGLPASPAMNG 474
            GP G +   GP  + G     G+ G    G+ G        G+P  +G P  P +NG
Sbjct: 2279 GPKGGIGNRGPRGETG---DDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNG 2332


>sp|P15989|CO6A3_CHICK Collagen alpha-3(VI) chain OS=Gallus gallus GN=COL6A3 PE=2 SV=2
          Length = 3137

 Score = 33.1 bits (74), Expect = 5.8,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 67/201 (33%), Gaps = 17/201 (8%)

Query: 248  KKGGGGNSKKGGAIDMPFEMMGGKESKDGKNGKDGKKG-SKENNKGGKKKDEGSRKDK-- 304
            K   G   +KG   +M  + + G+E   G  G  G+KG S      G K + G R D+  
Sbjct: 2099 KGSRGFPGEKGELGEMGLDGIDGEEGDKGLPGFSGEKGFSGRRGSKGAKGERGERGDRGL 2158

Query: 305  ------------NGGKSGGGGFFGFGKKKGGEDKKNGKSSGGFLGFGKKDKGSGDSGNKN 352
                          G  G  G  G   + G   ++      G  G   +    G  G K 
Sbjct: 2159 RGDPGESGADNTQRGTRGQKGEIGQMGEPGPAGQRGQDGGVGRKGMAGRRGPIGVKGTKG 2218

Query: 353  GKNGSGAGGKNKGNGPKKGGGKNEYDGVLDMKKMKDD-VFDFDVPKANHGGKGGKANGHG 411
                 G  G+    GP+   G+    G+   + +                G+ G   G  
Sbjct: 2219 ALGQPGPAGEQGMRGPQGPPGQIGTPGIRGEQGIPGPRAGGGQPGAPGERGRIGPL-GRK 2277

Query: 412  GGAKNMGPMGPMSQMGPMSQM 432
            G   N GP GP  Q GP  +M
Sbjct: 2278 GEPGNPGPRGPNGQQGPRGEM 2298


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,341,393
Number of Sequences: 539616
Number of extensions: 15986998
Number of successful extensions: 205177
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 1895
Number of HSP's that attempted gapping in prelim test: 83181
Number of HSP's gapped (non-prelim): 55915
length of query: 553
length of database: 191,569,459
effective HSP length: 123
effective length of query: 430
effective length of database: 125,196,691
effective search space: 53834577130
effective search space used: 53834577130
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)