Query 008792
Match_columns 553
No_of_seqs 165 out of 2497
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2.3E-30 8E-35 276.8 24.5 453 26-547 9-479 (491)
2 2xut_A Proton/peptide symporte 100.0 5.8E-30 2E-34 276.2 22.0 473 27-548 9-511 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.7E-27 5.8E-32 251.1 22.7 401 28-543 26-437 (451)
4 3o7q_A L-fucose-proton symport 99.9 1.9E-25 6.4E-30 234.7 25.0 356 27-500 23-408 (438)
5 4gc0_A D-xylose-proton symport 99.9 2.3E-25 8E-30 237.8 16.9 410 64-553 53-476 (491)
6 2gfp_A EMRD, multidrug resista 99.9 1.3E-23 4.6E-28 216.3 9.0 167 33-227 3-169 (375)
7 2cfq_A Lactose permease; trans 99.9 7.2E-23 2.5E-27 214.5 5.3 394 30-548 7-408 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 6.4E-13 2.2E-17 139.3 14.0 179 30-232 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.1E-12 7E-17 135.0 14.1 168 30-227 258-427 (438)
10 2cfq_A Lactose permease; trans 99.3 2.4E-12 8.2E-17 134.4 10.7 177 31-234 221-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 3.7E-11 1.3E-15 127.7 10.0 185 32-235 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 3E-10 1E-14 120.5 9.4 185 31-237 277-467 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1.6E-10 5.4E-15 118.2 1.9 164 30-219 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 4.9E-07 1.7E-11 96.5 3.2 150 67-234 336-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.3e-30 Score=276.78 Aligned_cols=453 Identities=19% Similarity=0.289 Sum_probs=290.0
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhh-----cCCchhhhhhHHHHHHHHHhhhhhhHHHHhhh-ccchHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFE-----LNQGNVQAVNNVTNWSGTCYVMPLIGAFLADA-YLGRYWT 99 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Gr~~~ 99 (553)
++++|.++...+..++.+++++++.++++.|+++. +|.+..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34567788999999999999999999999999988 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhh
Q 008792 100 IASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKK 179 (553)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (553)
+..+.++.+++.++++++ .+.+.++++|+++|++.+...+...++++|.+|+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~---- 143 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP--------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR---- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC--------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----
T ss_pred HHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----
Confidence 999999999999988876 24677899999999999999999999999999987744
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeecc---CCCCC-hHHHHHHhhhh
Q 008792 180 KSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQ---KPGGS-PLTRICQSLLY 255 (553)
Q Consensus 180 r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~ 255 (553)
|+.++++++...++|..++|.+++++.+..||++.|++.++..+++.+.++...++..++ +++.. +..+..+.. .
T Consensus 144 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 222 (491)
T 4aps_A 144 RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL-V 222 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH-H
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH-H
Confidence 778888899999999999999999999989999999998777776666554433322211 11111 111111100 0
Q ss_pred hccchh--hhhc-cccccccCCccch-hhh--c-cccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHh
Q 008792 256 ETADAE--FAVI-GSHKLDHTKQLSF-LDK--A-AVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAV 328 (553)
Q Consensus 256 ~~~~~~--~~~~-~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (553)
.....- .... ......+....+. ... . ........ ....|+... ....++++......++.....++..
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFY---FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAI 298 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH---HHHHC-------------CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHH---HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 0000000000000 000 0 00000000 000010000 0012233333344444455555555
Q ss_pred hccccceEEeeec-ccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 008792 329 YSQMGTLFVLQGN-TMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFA 407 (553)
Q Consensus 329 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 407 (553)
+.+....+..+.. ..+.. ....+.......+..++..++.+++ .+|..+|+ ....+.+..+.++.+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~r~--~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 299 EEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWL----WTAWKKNQ--PSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHH----HHHTTTC-----CHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHH----HHHHhccC--CCchHHHHHHHHHHHHH
Confidence 5544443222111 11111 0234445556666667777777775 44443331 33455677888888888
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHH
Q 008792 408 MLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNY 487 (553)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ 487 (553)
++.+....... ..+...+.++.++..++.+++.+...+..++++.|..|++.|++++|+.++...+|+.
T Consensus 368 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 368 FLLMAIPGALY-----------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HTTTHHHHHHC-----------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 77766543210 0011246677778889999999999999999999999999999999999999999999
Q ss_pred HhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008792 488 LSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKK 547 (553)
Q Consensus 488 ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~ 547 (553)
+++.+.+.+.+. ++...|++.+++++++.++.++..++.+++.
T Consensus 437 i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 437 LNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp HHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877542 1234577888888888887777776665443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=5.8e-30 Score=276.16 Aligned_cols=473 Identities=27% Similarity=0.451 Sum_probs=284.9
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcC------CchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELN------QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTI 100 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~ 100 (553)
+++|.++...+..++.+++++++.++++.|+.+++| .+..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345678889999999999999999999999999999 99999999999999999999999999999976999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhh
Q 008792 101 ASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180 (553)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 180 (553)
.++.++.+++.++++++. .+.+.+++.|+++|++.+...|...+++.|.+|+++ |
T Consensus 89 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r 143 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------K 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------T
T ss_pred HHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------h
Confidence 999999999998888762 147789999999999999999999999999999988 7
Q ss_pred hhh---HHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhc
Q 008792 181 SSF---FNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYET 257 (553)
Q Consensus 181 ~~~---~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (553)
++. +++++...++|..++|.+++++.+..||++.|++.++..+++.+.++...++.+++++++++..+..+......
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSAL 223 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHH
Confidence 544 45599999999999999999999889999999988887777666655544433322222221111111000000
Q ss_pred cch----hh-h-hcc-------ccccccCCccchhhhccccCCCCcCCCCCCcc-------ccccchhhhhHHHHHhHHH
Q 008792 258 ADA----EF-A-VIG-------SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAW-------RLCTVTQVEEFKSIIRLLP 317 (553)
Q Consensus 258 ~~~----~~-~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 317 (553)
+++ +. . ... .......+............-...+.....+| +.......+++++++....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (524)
T 2xut_A 224 LTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILV 303 (524)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHH
T ss_pred hhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHH
Confidence 000 00 0 000 00000000000000000000000000000011 0000011122333333334
Q ss_pred HHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHH
Q 008792 318 IWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRI 397 (553)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~ 397 (553)
++.....++..+.+..+.+..+....+.. .+ .+.+.....+.+..++..++.+++..+..+|..++ .+..+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 376 (524)
T 2xut_A 304 LFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKM 376 (524)
T ss_dssp HHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHH
T ss_pred HHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHH
Confidence 44444444444554444333322221111 00 13344455566666777777777644444543322 4455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHH
Q 008792 398 AIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL 477 (553)
Q Consensus 398 ~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~ 477 (553)
..|+++.+++++.+....... +++...+.+++++..++.+++++...+..++++.|..|++.||+++|+
T Consensus 377 ~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 445 (524)
T 2xut_A 377 GAGIAITGLSWIVVGTIQLMM-----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF 445 (524)
T ss_dssp HTHHHHHHHHHHTTTTTTTTT-----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHH
Confidence 778888887776665431000 001124667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhhhhccccccCCCCCCCccC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008792 478 SLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPD-NLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKL 548 (553)
Q Consensus 478 ~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~ 548 (553)
+++...+|+.+|+.+.+.+.+..+ .+|..+ +. +.....|++.+++++++.++++++.+++++++.
T Consensus 446 ~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 446 WTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999998765321 123211 00 011233778888888888887777776654433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.7e-27 Score=251.12 Aligned_cols=401 Identities=12% Similarity=-0.007 Sum_probs=255.2
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
.|+.++...+..+...+..+.+.+.+|.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 34556666677777777776666666655 4566 9999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHh----hhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhh
Q 008792 108 VIGMTILTM----SASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSF 183 (553)
Q Consensus 108 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 183 (553)
+++.+++++ + .+++.++++|+++|++.+...+...+++.|.+|+++ |+++
T Consensus 103 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~ 156 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT--------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGI 156 (451)
T ss_dssp HHHHHHHHHCHHHH--------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHH
T ss_pred HHHHHHHHhhhhcc--------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHH
Confidence 999999988 5 246678999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhh
Q 008792 184 FNWFYFSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEF 262 (553)
Q Consensus 184 ~~~~~~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (553)
+++.+...++|..++|.+++++.+..| |++.|++.+++.++..+..++..++.+++....++ ++
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~- 221 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--------------EE- 221 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--------------TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh--------------hh-
Confidence 999999999999999999999888888 99999988877766655544444432221110000 00
Q ss_pred hhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHH-HHHHHHHHHHHhhccccceEEeeec
Q 008792 263 AVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLL-PIWAIGIVFSAVYSQMGTLFVLQGN 341 (553)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (553)
. . + +.+. +.. +. .+....++..........+.++... ..+.............+. +.
T Consensus 222 ~--~--~--~~~~----~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 279 (451)
T 1pw4_A 222 Y--K--N--DYPD----DYN-----EK--AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT-YL---- 279 (451)
T ss_dssp T--C--C--C------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HB----
T ss_pred h--c--c--cccc----cch-----hh--hhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----
Confidence 0 0 0 0000 000 00 0000000000000000112222111 111111111111111111 11
Q ss_pred ccCcCCCCCccccc---ccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHH
Q 008792 342 TMDLHIDNSFEIPS---ASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI-FAMLTAGTLELV 417 (553)
Q Consensus 342 ~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~-~~~l~~~~~~~~ 417 (553)
....+ .++ +.......+..++..++.++ +.+|..+ ++++.+..+..+.. ++++.+...
T Consensus 280 --~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--- 341 (451)
T 1pw4_A 280 --KEVKH----FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTLVTIATIVYWMN--- 341 (451)
T ss_dssp --TTBSC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC---
T ss_pred --HHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh---
Confidence 11111 112 12222233333444444444 4555310 22344444444433 444443321
Q ss_pred HHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHH-HHHHhhHhhhhc
Q 008792 418 RLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAAL-GNYLSTLLVNIV 496 (553)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~ig~~l~~~i 496 (553)
...+.+..+...++.|++.....+..+.++.|..|++.|+++.|+.+....+ |..+++.+.+.+
T Consensus 342 ---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l 406 (451)
T 1pw4_A 342 ---------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 406 (451)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124555666777888888888888889999999999999999999999999 999999999988
Q ss_pred cccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008792 497 TDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCY 543 (553)
Q Consensus 497 ~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~ 543 (553)
.+.. ++...|++.+++.+++.++.+...++.
T Consensus 407 ~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 407 VDFF----------------GWDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp HHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7632 234567888888888777776665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.9e-25 Score=234.69 Aligned_cols=356 Identities=13% Similarity=0.054 Sum_probs=230.4
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
++++.+.......+...+....+.+.+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 4455556666666666666665555555 46788999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHH---HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhh
Q 008792 107 YVIGMTIL---TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSF 183 (553)
Q Consensus 107 ~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 183 (553)
.+++.+++ ... .+++.++++|+++|++.+...+...+++.|.+|+++ |+++
T Consensus 101 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~ 154 (438)
T 3o7q_A 101 YALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR 154 (438)
T ss_dssp HHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHH
T ss_pred HHHHHHHHHhcccc--------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHH
Confidence 99999888 444 358889999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHhhhhheeec-cccc-------------------------chhhhHHHHHHHHHHHHHHHhccceee
Q 008792 184 FNWFYFSINIGALVAASCLVWIQ-TNVG-------------------------WGWGFGIPAVAMAIAVVSFFAGSRLYR 237 (553)
Q Consensus 184 ~~~~~~~~~~G~~~~~~i~g~l~-~~~~-------------------------~~~~f~i~~~~~~~~~~~~~~~~~~~~ 237 (553)
+++.+...++|..++|.+++++. +..+ |++.|++.++..++..+.++.... +
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p 232 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--P 232 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--C
Confidence 99999999999999999999987 5554 899997766655555444333211 1
Q ss_pred ccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHh-HH
Q 008792 238 YQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIR-LL 316 (553)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 316 (553)
+++++.++ +.+..+.. ..++ ...+.+.+.. .+
T Consensus 233 ~~~~~~~~--------------------------~~~~~~~~----------------~~~~-----~~~~~~~~~~~~~ 265 (438)
T 3o7q_A 233 ALQSDNHS--------------------------DAKQGSFS----------------ASLS-----RLARIRHWRWAVL 265 (438)
T ss_dssp CCTTTCCC--------------------------CSSTTSHH----------------HHHH-----HHTTCSHHHHHHH
T ss_pred cccccccc--------------------------cccccchh----------------hhHH-----HHHhChHHHHHHH
Confidence 11110000 00000000 0000 0000111111 11
Q ss_pred HHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHH
Q 008792 317 PIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQR 396 (553)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~ 396 (553)
..+.............+.++.. ...+ ......+.......+..++..++.++ +.+| +++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~------~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~ 327 (438)
T 3o7q_A 266 AQFCYVGAQTACWSYLIRYAVE------EIPG-MTAGFAANYLTGTMVCFFIGRFTGTW----LISR-------FAPHKV 327 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HSTT-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------SCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh------ccCC-cchhHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hcchHH
Confidence 1111111111111111222011 1111 00001111222222333344444444 4555 344466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHH
Q 008792 397 IAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSA 476 (553)
Q Consensus 397 ~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g 476 (553)
+..+.++.+++.+..... +..+.+...++.+++.+...|..+++..|..|++ ++.+.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 385 (438)
T 3o7q_A 328 LAAYALIAMALCLISAFA---------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSS 385 (438)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhh
Confidence 777777777766655543 1123344557788888888899999999999977 889998
Q ss_pred HHHHHHHHHHHHhhHhhhhccccc
Q 008792 477 LSLTTAALGNYLSTLLVNIVTDFS 500 (553)
Q Consensus 477 ~~~~~~~lg~~ig~~l~~~i~~~~ 500 (553)
+.. ...+|+.+++.+.+.+.|..
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHh
Confidence 887 66799999999999887754
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=2.3e-25 Score=237.81 Aligned_cols=410 Identities=12% Similarity=0.045 Sum_probs=223.8
Q ss_pred chhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCc-CCCchhHHH
Q 008792 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVC-HPTGLQIAV 142 (553)
Q Consensus 64 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (553)
+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+++++........ .....- ..-..+++.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~---~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSI---NPDNTVPVYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCS---SSSSSCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhh---cchhHHHHHHhhhHHH
Confidence 345678889999999999999999999999 999999999999999999988542100000 000000 001146889
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc--------ccchhh
Q 008792 143 FFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN--------VGWGWG 214 (553)
Q Consensus 143 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~--------~~~~~~ 214 (553)
++++|+++|++.|+..+..+++++|..|+++ |++..++.+.+..+|..+++.++..+... .+|++.
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM 202 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence 9999999999999999999999999999998 99999999999999999998877655432 346655
Q ss_pred hHHHHHHHHHHHHHHHhccceeec---cCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcC
Q 008792 215 FGIPAVAMAIAVVSFFAGSRLYRY---QKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCV 291 (553)
Q Consensus 215 f~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (553)
+.+..+..++.+... +..|+.++ .+.+.++..+..+........+++.... .+..+....
T Consensus 203 ~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~------- 265 (491)
T 4gc0_A 203 FASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI---------KHSLDHGRK------- 265 (491)
T ss_dssp HHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-------
T ss_pred hhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH---------HHHHHhhhh-------
Confidence 554444333333222 22222111 0111111111111000000000000000 000000000
Q ss_pred CCCCCccccccchhhhhHHHHHhHHHHHHHHHHH-HHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHH
Q 008792 292 KGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVF-SAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWV 370 (553)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 370 (553)
... .......++.............. ......+.+.+.. ..+ ..............+..++..
T Consensus 266 --~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~ 329 (491)
T 4gc0_A 266 --TGG------RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-------TLG-ASTDIALLQTIIVGVINLTFT 329 (491)
T ss_dssp --HTT------HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred --hhh------HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-------hcC-CCccchhhHHHHHHHHHHHHH
Confidence 000 00000111111111111000000 0000000010000 000 000001111122222223333
Q ss_pred HhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHH
Q 008792 371 PIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCA 450 (553)
Q Consensus 371 ~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~ 450 (553)
.+... +.+|..+ ++.+..+.....++++.++..... ....+..+....+...+
T Consensus 330 ~~~~~----l~dr~Gr-------r~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 330 VLAIM----TVDKFGR-------KPLQIIGALGMAIGMFSLGTAFYT----------------QAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHHHH----HHHHHCS-------HHHHHHHHHHHHHHHHHHHHHHHT----------------TCCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHhhcC-------cchhccchHHHHHHHHHHHHHHhc----------------ccchHHHHHHHHHHHHH
Confidence 33333 4555432 355666777777776665544211 01222222222222222
Q ss_pred -HHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHH
Q 008792 451 -EVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLS 529 (553)
Q Consensus 451 -~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~ 529 (553)
.....|..+.+..|.+|.+.|++++|+.+..+.+++.+++.+.+.+.+...... ..+....|+++++++
T Consensus 383 ~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~----------~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 383 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA----------HFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH----------HHTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHH
Confidence 233447778899999999999999999999999999999988876654211000 001124588999999
Q ss_pred HHHHHHHHHHHhhcccccccccCC
Q 008792 530 VLNLGVYLMVARCYTYKKLVVSSH 553 (553)
Q Consensus 530 ~v~~~~~~~~~~~~~~~~~~~~~~ 553 (553)
+++.++.+++.||+|+|++||.|+
T Consensus 453 ~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred HHHHHHHHheecCCCCCCHHHHHH
Confidence 999999999999999999988653
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=1.3e-23 Score=216.26 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=147.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT 112 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 112 (553)
+......++..+....+.+.+|.+ .+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566677777777777777664 678999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
+.+.. .+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+...+
T Consensus 81 ~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 81 VAVTT--------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGIL 134 (375)
T ss_dssp HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHH
T ss_pred HHHHh--------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence 98877 458889999999999999999999999999999988 9999999999999
Q ss_pred HHHHHhhhhheeecccccchhhhHHHHHHHHHHHH
Q 008792 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
+|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999988999999877766555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.86 E-value=7.2e-23 Score=214.54 Aligned_cols=394 Identities=9% Similarity=-0.059 Sum_probs=221.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|..+......++...++..+.+++|.|+++++|.|..+.+++.+.+.++..++++++|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666666777777777788999999999999999999999999999999999999999999 999999988876654
Q ss_pred HHHHH---HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 110 GMTIL---TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 110 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
+.... ..... ....++.++.+.+++.+...+...+...+..++..+ .++..++.
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~ 142 (417)
T 2cfq_A 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR 142 (417)
T ss_dssp CHHHHHHHTHHHH-------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence 33211 11100 000123445555555554444444444444332211 16777777
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIG 266 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (553)
.+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++ +++..++ ++
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------~~----- 199 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATV--------------AN----- 199 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCS--------------SS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---ccccccc--------------cc-----
Confidence 777889999999999998876 589999887665533333222111111 0000000 00
Q ss_pred ccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhh-ccccceEEeeecccCc
Q 008792 267 SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVY-SQMGTLFVLQGNTMDL 345 (553)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 345 (553)
..+ +..+.. ....++ .....+...............+..+ +..+.++.. ....
T Consensus 200 ~~~-~~~~~~-----------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 253 (417)
T 2cfq_A 200 AVG-ANHSAF-----------------SLKLAL-----ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS---FFAT 253 (417)
T ss_dssp SSS-SCCCCC-----------------CHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSSS
T ss_pred ccc-cccccc-----------------cHHHHH-----HHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhc
Confidence 000 000000 000000 0000111111111111111111111 111111110 0000
Q ss_pred CCCCCccccc---ccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 346 HIDNSFEIPS---ASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREV 422 (553)
Q Consensus 346 ~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~ 422 (553)
..... +.....+.+..++...+.++ +.||. ++++.+..+.++.+++++.....
T Consensus 254 -----~~~~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~-------g~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T 2cfq_A 254 -----GEQGTRVFGYVTTMGELLNASIMFFAPL----IINRI-------GGKNALLLAGTIMSVRIIGSSFA-------- 309 (417)
T ss_dssp -----HHHHTHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------CHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred -----cCCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------cHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 00111 11122222233333444444 45553 23355666666666665444331
Q ss_pred hhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHH-HHHHHHHHHHHhhHhhhhcccccc
Q 008792 423 KKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL-SLTTAALGNYLSTLLVNIVTDFST 501 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~ig~~l~~~i~~~~~ 501 (553)
.+.+.+++...+.+++.....+..+.++.|..|++.|+++.+. +++...+|+.++|.+.+.+.+..
T Consensus 310 ------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~- 376 (417)
T 2cfq_A 310 ------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI- 376 (417)
T ss_dssp ------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-
Confidence 2334444555566666666667778899999999999999999 48888999999999999776521
Q ss_pred CCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008792 502 RHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKL 548 (553)
Q Consensus 502 ~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~ 548 (553)
++...|.+.+++++++.++.+...+++++.++
T Consensus 377 ---------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 377 ---------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 34456788888888887776666666655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.43 E-value=6.4e-13 Score=139.34 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=149.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc-cchHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY-LGRYWTIASFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~~ 108 (553)
|.++...+..++.....+++..++|.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ .|||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5677888888889999999999999999988999999999999999999999999999999996 267777777666555
Q ss_pred -HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 109 -IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 109 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
++.+++.+. +. .+.+.+.+..++.|++.+...+...+++.|.+|+++ |+++++++
T Consensus 332 ~~~~~~~~~~---~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 387 (451)
T 1pw4_A 332 TIATIVYWMN---PA---------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 387 (451)
T ss_dssp HHHHHHTTSC---CT---------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred HHHHHHHHHh---cc---------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence 555444433 11 246667777888899888888888899999999988 99999999
Q ss_pred HHHHHH-HHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 188 YFSINI-GALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 188 ~~~~~~-G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
+...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999988887777766655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=2.1e-12 Score=134.99 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=136.7
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHH-hhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNY-LRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
|.++......++.....+++..+++.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+.+..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 557777788888888888889999999 8888899999999999999999999999999999999 99999999988888
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++.++..... +.+. .+..++.|++.+...|...++..|.+|++ ++.+.++..
T Consensus 337 ~~~~~~~~~~--------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 388 (438)
T 3o7q_A 337 ALCLISAFAG--------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHCC--------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH
T ss_pred HHHHHHHHcC--------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH
Confidence 8877776551 2332 33447788889988999999989998854 455555554
Q ss_pred HHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~ 227 (553)
...+|+.++|.+.|++.+..| ++..|++.++..++.+.
T Consensus 389 -~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 567999999999999999988 99999876655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=2.4e-12 Score=134.36 Aligned_cols=177 Identities=7% Similarity=-0.037 Sum_probs=130.3
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCC---chhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQ---GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
.++......++....++....++|.|+.+.++. +....+...+...++..++.++.|+++||+ |||+++..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 344444444444455555666788888766553 234456667777778888999999999999 9999998888777
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH-
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW- 186 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~- 186 (553)
+++..+.++. .+.+.+++..++.+++.+...+...++..|.+|++. |+++.+.
T Consensus 300 ~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 353 (417)
T 2cfq_A 300 SVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVC 353 (417)
T ss_dssp HHHHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHH
T ss_pred HHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence 7776665543 124555666666777766666667889999999887 9999998
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
++....+|+.++|.++|++.+..|++..|.+.+++.+++.+..+...+
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 588888999999999999988888888888877777776665544333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.19 E-value=3.7e-11 Score=127.66 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=136.4
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHH-----HHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIA-----SFSII 106 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-----~~~~~ 106 (553)
.+......++....+......++.|+.+.++.+..+.+...+...+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 34445555556666666777888999888888878888888889999999999999999999 9876554 66666
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+++..++........ .+...+.+.+.+..++.|++.+...+...+++.|.+|++. |+++.++
T Consensus 364 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 426 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG-----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSM 426 (491)
T ss_dssp HHHHHTTTHHHHHHCC-----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHH
T ss_pred HHHHHHHHHHHHHhcC-----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 6666655554321000 0011245667778888999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccce
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRL 235 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 235 (553)
.+...++|..++|.+.+++.+ .++.+.|.+.+++.+++.+..+...++
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876 467777777776666666555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.05 E-value=3e-10 Score=120.48 Aligned_cols=185 Identities=9% Similarity=0.003 Sum_probs=126.2
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
.........++.....+.......+++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 344444444444444444444455566677788887777777788889999999999999999 9999999998888888
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
.+..+....... ........+..+..+.+. ...|..+.+.+|.+|.+. |+++.++.+..
T Consensus 356 ~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 356 MFSLGTAFYTQA--------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHTTC--------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHHHhccc--------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 776665422111 111222222222223232 334677889999999999 99999999999
Q ss_pred HHHHHHHhhhhheeecc------cccchhhhHHHHHHHHHHHHHHHhccceee
Q 008792 191 INIGALVAASCLVWIQT------NVGWGWGFGIPAVAMAIAVVSFFAGSRLYR 237 (553)
Q Consensus 191 ~~~G~~~~~~i~g~l~~------~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 237 (553)
..+|+.+++.+.+.+.+ ..++.+.|++.+++.+++.++.++..|+.+
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 99999998887766543 245666777777777777776666666543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.94 E-value=1.6e-10 Score=118.21 Aligned_cols=164 Identities=11% Similarity=-0.022 Sum_probs=127.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH-HH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII-YV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~ 108 (553)
|.++......++.....+.+..++|.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4567777788888888888889999999988999999999999999999999999999999999 772 2333322 22
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++......... + ..+.+.+++..++.|++.+...+...++..|.+| ++ |+++.++.+
T Consensus 276 ~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~ 332 (375)
T 2gfp_A 276 AGLLMWIPDWF-G---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVG 332 (375)
T ss_dssp TSSSSSHHHHH-H---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHH
T ss_pred HHHHHHHHhhh-c---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHH
Confidence 22221111100 0 0245666777888899999999999999999998 55 999999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPA 219 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~ 219 (553)
...++|..++|.+.|.+.+..+|+..+.+.+
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999988778887766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.19 E-value=4.9e-07 Score=96.54 Aligned_cols=150 Identities=12% Similarity=0.076 Sum_probs=95.6
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHh----hhccch----HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCch
Q 008792 67 QAVNNVTNWSGTCYVMPLIGAFLA----DAYLGR----YWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGL 138 (553)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~la----Dr~~Gr----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (553)
..+.+.....++..+..++.+++. ||. |+ ++.+.++.++.+++.++++....... ++...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~~~~ 403 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD-----------GGSAL 403 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT-----------TTCCC
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCCc
Confidence 345555555566666777777664 444 43 24566666666666665554310000 00112
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccc--cc-----
Q 008792 139 QIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV--GW----- 211 (553)
Q Consensus 139 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~--~~----- 211 (553)
+.+.+++..++.|++.+...+...++..|.+|++. |++++++++...++|..++|.+.+.+.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 45667778888999999999999999999999998 999999999999999999999999887632 22
Q ss_pred ----hhhhHHHHHHHHHHHHHHHhccc
Q 008792 212 ----GWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 212 ----~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
+..|++.+++.+++.+.++...+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23355555555555554444433
Done!