Query 008793
Match_columns 553
No_of_seqs 350 out of 1527
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 16:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1648 Uncharacterized conser 100.0 5.2E-49 1.1E-53 402.9 8.4 450 41-552 250-729 (813)
2 KOG2224 Uncharacterized conser 100.0 6.5E-41 1.4E-45 339.0 23.0 223 328-552 404-658 (781)
3 PF12068 DUF3548: Domain of un 100.0 1.7E-38 3.7E-43 305.9 14.7 148 42-189 3-200 (213)
4 smart00164 TBC Domain in Tre-2 100.0 1.4E-35 3E-40 286.8 16.6 178 356-552 2-181 (199)
5 KOG2058 Ypt/Rab GTPase activat 100.0 2.1E-33 4.6E-38 294.6 15.2 198 331-550 123-329 (436)
6 KOG4567 GTPase-activating prot 100.0 1.2E-33 2.6E-38 277.9 12.5 217 333-552 11-292 (370)
7 KOG2197 Ypt/Rab-specific GTPas 100.0 3.3E-34 7.1E-39 309.2 5.1 229 323-552 142-370 (488)
8 COG5210 GTPase-activating prot 100.0 8.7E-31 1.9E-35 286.9 15.8 208 327-552 179-391 (496)
9 KOG1092 Ypt/Rab-specific GTPas 100.0 1.3E-30 2.9E-35 265.3 9.6 202 343-553 174-400 (484)
10 KOG2223 Uncharacterized conser 99.9 3.7E-27 8.1E-32 240.0 15.7 209 332-551 275-487 (586)
11 PF00566 RabGAP-TBC: Rab-GTPas 99.9 1.7E-27 3.7E-32 231.8 11.4 177 361-552 1-178 (214)
12 KOG2222 Uncharacterized conser 99.9 1.4E-24 2.9E-29 222.9 12.6 195 334-552 149-345 (848)
13 KOG4347 GTPase-activating prot 99.9 1.1E-21 2.3E-26 210.0 13.1 196 331-551 173-372 (671)
14 KOG4436 Predicted GTPase activ 99.9 1.5E-21 3.1E-26 211.7 13.7 201 332-552 550-755 (948)
15 KOG2221 PDZ-domain interacting 99.8 2.1E-21 4.5E-26 183.0 0.5 190 331-544 75-267 (267)
16 KOG1093 Predicted protein kina 99.8 4.9E-19 1.1E-23 186.6 12.1 182 342-552 340-524 (725)
17 KOG1091 Ypt/Rab-specific GTPas 99.7 2.3E-18 5E-23 181.6 8.6 189 361-553 27-293 (625)
18 KOG1102 Rab6 GTPase activator 99.7 2.6E-18 5.6E-23 182.6 8.4 183 346-552 134-317 (397)
19 KOG2595 Predicted GTPase activ 99.7 1.3E-16 2.9E-21 159.5 8.2 181 345-553 46-231 (395)
20 KOG4436 Predicted GTPase activ 99.2 2.6E-11 5.6E-16 132.9 10.3 196 332-552 164-369 (948)
21 KOG3636 Uncharacterized conser 98.3 1.3E-06 2.8E-11 91.1 7.4 125 422-550 69-195 (669)
22 KOG2197 Ypt/Rab-specific GTPas 97.5 7.4E-05 1.6E-09 81.8 4.5 83 323-405 42-124 (488)
23 KOG2224 Uncharacterized conser 93.7 0.02 4.3E-07 60.1 0.2 34 462-495 566-599 (781)
24 KOG2801 Probable Rab-GAPs [Int 93.7 0.56 1.2E-05 47.3 10.3 164 346-532 31-201 (559)
25 PF08567 TFIIH_BTF_p62_N: TFII 67.2 35 0.00076 28.0 7.6 65 64-142 12-78 (79)
26 PF14472 DUF4429: Domain of un 59.4 9.4 0.0002 32.4 3.0 31 104-134 27-58 (94)
27 PF14961 BROMI: Broad-minded p 51.4 63 0.0014 39.3 8.9 104 446-550 1084-1206(1296)
28 COG1507 Uncharacterized conser 40.0 57 0.0012 30.0 4.9 31 110-141 20-53 (167)
29 PF04683 Proteasom_Rpn13: Prot 35.2 2.1E+02 0.0045 23.8 7.3 56 62-127 13-69 (85)
30 PF07024 ImpE: ImpE protein; 25.5 67 0.0015 28.8 2.9 30 106-135 30-63 (123)
31 PF14844 PH_BEACH: PH domain a 24.9 75 0.0016 27.1 3.1 93 45-146 2-97 (106)
32 PF08109 Antimicrobial14: Lact 23.3 50 0.0011 21.3 1.2 15 462-476 3-17 (31)
33 PRK03636 hypothetical protein; 21.6 83 0.0018 30.1 2.9 62 111-174 40-101 (179)
34 PF11605 Vps36_ESCRT-II: Vacuo 21.1 5E+02 0.011 21.8 7.3 72 44-131 15-88 (89)
No 1
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=100.00 E-value=5.2e-49 Score=402.93 Aligned_cols=450 Identities=22% Similarity=0.322 Sum_probs=339.7
Q ss_pred CCcEEEEeeCCeEEccCCccccccCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeee--eeCCCeeEEEEeC
Q 008793 41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRRHT 118 (553)
Q Consensus 41 ~~~~llf~K~~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~--v~ls~i~si~~~~ 118 (553)
++++|||+||+|.|+|.. +++.+||||+|+|....++|+|+||+.|+++...++.+++.||.++ |++.||.+||||+
T Consensus 250 sr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHcHQ 328 (813)
T KOG1648|consen 250 SRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHCHQ 328 (813)
T ss_pred chhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEeec
Confidence 678999999999999976 8999999999999999999999999999999988888999999876 9999999999999
Q ss_pred CCCCceEEEEEeCCCCcCCceeeccCCH-HHHHHHHHhcccccccCCCCceEEEeCC---chhhhhhhcccCCCccc-cc
Q 008793 119 PAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDF---DNRLQRTLSSLELPRAV-SI 193 (553)
Q Consensus 119 p~~g~~~~il~~~dG~~~P~L~F~~GG~-~~fl~~L~~~~~l~rS~~d~~~~lv~~~---~~~l~~~~s~~~~~~~~-~~ 193 (553)
...+..++++|.+||++.|||+|+.||+ ..||+||++ +.|++.++||++|...+- -++|++. |+....... .-
T Consensus 329 q~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKR-S~~~s~~~~~~~ 406 (813)
T KOG1648|consen 329 QDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKR-STAVSNPAMEMG 406 (813)
T ss_pred ccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhc-CcccCCchhhcC
Confidence 9877789999999999999999999999 799999999 999999999999999772 2677553 221111100 11
Q ss_pred CCCCCCCcccC-CCCCcccccccCC---------------CCCCCCCcccccccc---ccCcCCChhhhhhHHHHhhHHH
Q 008793 194 ASGSSTPVSIG-DSPTNVNLERTNG---------------GLGHDSHSISQFHGR---QKQKAQDPARDISIQVLEKFSL 254 (553)
Q Consensus 194 ~~~~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~s~ 254 (553)
...+++||++. +.++..+....|- ...+.+.+|++..+. ....++.++ .+.+.++
T Consensus 407 ~~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll----- 480 (813)
T KOG1648|consen 407 TGRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL----- 480 (813)
T ss_pred cccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH-----
Confidence 23457788765 4444444322221 112334445543332 122334444 3567787
Q ss_pred HHHHHHHHHhhhhhccCCCCCccchhccccccccccCCCCCccccccc---c-CCCCCCCcccccccccccCCCCCCCCc
Q 008793 255 VTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV---N-EIPVAPDPVEFDKLTLVWGKPRQPPLG 330 (553)
Q Consensus 255 ~t~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~-~~~~~~~~~e~~~~~~~~~~~r~~~lt 330 (553)
|.+|.+|+++++| |||.+|+| |.++|++++. + .+-.+++|.+. ..+||
T Consensus 481 C~sMk~QI~sRAF-----YGWLaycR------------HLsTvRTHLsaLV~h~~~~pD~pcda-----------~~glt 532 (813)
T KOG1648|consen 481 CQSMKNQIMSRAF-----YGWLAYCR------------HLSTVRTHLSALVDHKTLIPDDPCDA-----------SAGLT 532 (813)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHH------------HHHHHHHHHHHHhcccccCCCCCCCc-----------ccccc
Confidence 9999999999999 99999855 5566666653 1 12234444432 56899
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHH
Q 008793 331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 410 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~ 410 (553)
++-|+.+..+. .+..-.+.+...+|++....|+.+|+.+++.+..++...+.+.........|++..-.|.
T Consensus 533 ~~~W~qy~~d~--t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~------- 603 (813)
T KOG1648|consen 533 EKFWKQYRADP--TIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF------- 603 (813)
T ss_pred HHHHHHHhcCC--chHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH-------
Confidence 99999998642 333444445556899999999999999999988887766655555556677776554443
Q ss_pred hhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHHH
Q 008793 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFV 490 (553)
Q Consensus 411 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~ 490 (553)
+-...+|+||+.|++++..+|...++ ++. +++.++|.-.|-+-||.|||+||.+|++..++||..+--||.
T Consensus 604 ------~~~~~~~~kd~e~~~~~~~~fs~~~~--les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s 674 (813)
T KOG1648|consen 604 ------RANLHRIDKDVERCDRNLMFFSNKDN--LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFS 674 (813)
T ss_pred ------hhheeeecchhhhCcchheeecCCcc--hhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCc
Confidence 33456899999999999999997554 466 889999999999999999999999999999999988888999
Q ss_pred HHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 491 ALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 491 ~Lm~~~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
-+|-+-...|.. .+||.+.+-.+. +++..+|-... +... .-..|+||+.-|+||+
T Consensus 675 ~~~~~q~~~~~q-~~~~~~~l~~~r-~~~v~~~l~s~-id~~----qa~~f~~~~~~~~~~~ 729 (813)
T KOG1648|consen 675 LLMLRQRGKFPQ-RPGMSKCLLNLR-LIQVVDPLISD-IDYA----QALSFRWFLLDFKREL 729 (813)
T ss_pred HHHHHhcccCCC-CCCccccccccc-chhhhcchhcc-hhhh----hhcceeeeccCccccc
Confidence 888776666643 357777666666 88888883322 2211 1244899999999985
No 2
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.5e-41 Score=338.97 Aligned_cols=223 Identities=41% Similarity=0.815 Sum_probs=193.3
Q ss_pred CCcHHHHHH-hhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHH-hhC
Q 008793 328 PLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW-QSI 405 (553)
Q Consensus 328 ~lt~~~W~~-~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~-~~~ 405 (553)
.++..-|.. .++..|.+-+.-+||+.||.|||..++|++||+|||.+|...+|.++|+.+...++.+|+++.++- .++
T Consensus 404 ki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysm 483 (781)
T KOG2224|consen 404 KIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSM 483 (781)
T ss_pred hhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455566765 677778888888999999999999999999999999999999999999999999999999886554 367
Q ss_pred ChHHHhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHH
Q 008793 406 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 485 (553)
Q Consensus 406 ~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~A 485 (553)
++++...| |+...-.++|||.||++++++|.+++||+.+.++|||..|+.|||.+||.|||+|++||+|.-.++|.++
T Consensus 484 speeh~~f--wknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqneset 561 (781)
T KOG2224|consen 484 SPEEHIAF--WKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESET 561 (781)
T ss_pred CHHHHHHH--HhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccch
Confidence 77776666 5555667899999999999999999999999999999999999999999999999999999888888899
Q ss_pred HHHHHHHHHHhcc--------------------------CC--CCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCC--C
Q 008793 486 FWCFVALMERLGP--------------------------NF--NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDC--L 535 (553)
Q Consensus 486 Fw~f~~Lm~~~~~--------------------------~F--~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i--~ 535 (553)
||||++||..|.+ .| .+....|..++..|++|++.+.|..|+||++++- .
T Consensus 562 fwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~l 641 (781)
T KOG2224|consen 562 FWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGL 641 (781)
T ss_pred hhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchh
Confidence 9999998875421 12 2233578889999999999999999999999864 4
Q ss_pred cchhhHHHHHHHHHhhc
Q 008793 536 NYFFCFRWVLIQFKRII 552 (553)
Q Consensus 536 ~~~f~~rW~ltlF~rEF 552 (553)
-++||.||++.+|||||
T Consensus 642 ellfchrwlllcfkref 658 (781)
T KOG2224|consen 642 ELLFCHRWLLLCFKREF 658 (781)
T ss_pred hHHHHHHHHHHHhhhcc
Confidence 46899999999999998
No 3
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=100.00 E-value=1.7e-38 Score=305.94 Aligned_cols=148 Identities=32% Similarity=0.656 Sum_probs=129.1
Q ss_pred CcEEEEeeCCeEEccCCcc----ccccCceEEEEeeCCceeEEeeecCCCCC-Cc-------------------------
Q 008793 42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNS-NT------------------------- 91 (553)
Q Consensus 42 ~~~llf~K~~V~vhpt~~~----~~~I~G~L~l~~~~~~~~l~W~P~~~~~~-~~------------------------- 91 (553)
.++|||+|+||||||+++. ++||||||+|++++++++|+|+|.++... ..
T Consensus 3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~ 82 (213)
T PF12068_consen 3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP 82 (213)
T ss_pred cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence 5799999999999999988 79999999999999999999999887411 10
Q ss_pred -c--c----------------cccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceeeccCCHHHHHHH
Q 008793 92 -R--L----------------SEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT 152 (553)
Q Consensus 92 -~--~----------------~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~dG~~~P~L~F~~GG~~~fl~~ 152 (553)
+ . +..+....++|+|||+|||||++++|++|||||+|++|||+.+||||||+||+++||++
T Consensus 83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~ 162 (213)
T PF12068_consen 83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLKS 162 (213)
T ss_pred CcccccCCCCccccCCCCCCCCCcCCCcceEEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHHH
Confidence 0 0 00001123369999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccCCCCceEEEeCCc-hhhhhhhcccCCCc
Q 008793 153 IKQHVLLVRSVEDANVFLVNDFD-NRLQRTLSSLELPR 189 (553)
Q Consensus 153 L~~~~~l~rS~~d~~~~lv~~~~-~~l~~~~s~~~~~~ 189 (553)
|++|+.|.||+.|+++|||++.. ++|+++|+.+++.+
T Consensus 163 L~~~v~l~~S~~D~~~~lv~~~~s~aL~~S~~~L~lf~ 200 (213)
T PF12068_consen 163 LQRYVTLARSPRDSNLYLVNDHNSEALSQSFSELQLFD 200 (213)
T ss_pred HHhhEEEeecCCCCcEEEEECCCchHHHHHHHHhhccc
Confidence 99999999999999999999976 89999999988764
No 4
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=1.4e-35 Score=286.81 Aligned_cols=178 Identities=35% Similarity=0.640 Sum_probs=157.6
Q ss_pred cCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHhhhhhhhhhccccccccccCCCCCC
Q 008793 356 YGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVT 435 (553)
Q Consensus 356 ~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~ 435 (553)
++|||+.+|+.||+.++|+.+...+ ..+..|.++++++...... ...+|++||.||+|+++
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~~----------~~~~I~~Dv~Rt~~~~~ 62 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDKS----------IVHQIEKDLRRTFPEHS 62 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCChh----------hHHHHhcccCCCCCCch
Confidence 7899999999999999999764321 1467888888775432211 23589999999999999
Q ss_pred CCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHH
Q 008793 436 FFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFAL 514 (553)
Q Consensus 436 ~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~~-F~~~~~g~~~~l~~l 514 (553)
+|+...+++++.|+|||.+|+.+||++||||||++|||++|+++.+|++|||||+++|+++.+. |..++.++...+..+
T Consensus 63 ~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
T smart00164 63 FFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQL 142 (199)
T ss_pred hhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHH
Confidence 9998777889999999999999999999999999999999999988999999999999998877 556777999999999
Q ss_pred HHHHHHHcHHHHHHHHH-CCCCcchhhHHHHHHHHHhhc
Q 008793 515 SKLVELLDNPLHNYFKQ-NDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 515 ~~LLq~~dP~L~~hL~~-~~i~~~~f~~rW~ltlF~rEF 552 (553)
+.+|+..+|+||+||++ .++.+.+|+++||+++|+++|
T Consensus 143 ~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~ 181 (199)
T smart00164 143 DRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFAREL 181 (199)
T ss_pred HHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhC
Confidence 99999999999999996 999999999999999999987
No 5
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-33 Score=294.56 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=166.9
Q ss_pred HHHHHHhhhcC-------CCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHh
Q 008793 331 SEEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (553)
Q Consensus 331 ~~~W~~~~~~~-------g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~ 403 (553)
..+|...+..+ --..-.+++|++| ++|||+++|+.||..+.|... ....+..|+.+++.-.
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~li-RkGiP~~~R~~VW~~~~g~~~-----------~~~~~~~yq~ll~~~~ 190 (436)
T KOG2058|consen 123 QLRWELELQSNIKLHSPNDFPPRSDELKRLI-RKGIPPELRGEVWWVLSGARR-----------QLNYPGYYQELLRKGD 190 (436)
T ss_pred HHHHHHHhhhhhcccccccccCCcHHHHHHH-HcCCChhhhhHHHHHHhcchh-----------hccCchhHHHHHhcCC
Confidence 35676666542 1124578999998 999999999999999999421 1112778887765421
Q ss_pred hCChHHHhhhhhhhhhccccccccccCCCCC-CCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCH
Q 008793 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 482 (553)
Q Consensus 404 ~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~-~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE 482 (553)
.-. .....+|+.|+.||||++ +.|..++..++..|+|||.||+.+||++|||||||.|||++|++|++|
T Consensus 191 ~~~----------~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~E 260 (436)
T KOG2058|consen 191 EKK----------SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSE 260 (436)
T ss_pred Ccc----------chHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCCh
Confidence 110 023458999999999999 799988777789999999999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHh
Q 008793 483 SQSFWCFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKR 550 (553)
Q Consensus 483 ~~AFw~f~~Lm~~~~~~-F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~r 550 (553)
++|||||+.+++++.+. |..++.|.+....+|..|++..+|+|+.||+.++++..++++.||+|+|+.
T Consensus 261 E~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d 329 (436)
T KOG2058|consen 261 EDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVD 329 (436)
T ss_pred HHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcc
Confidence 99999999999998875 677899999999999999999999999999999999999999999999975
No 6
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=277.93 Aligned_cols=217 Identities=28% Similarity=0.476 Sum_probs=176.6
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHcCCCC--hhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCCh---
Q 008793 333 EWTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP--- 407 (553)
Q Consensus 333 ~W~~~~~~~g~~~~~~~Lr~~i~~~GIp--~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~--- 407 (553)
..+..+......++.++||+.+ ..|+| ..+|+.+|++|||++|.+.+.|. .....++..|.....+.-.-+.
T Consensus 11 ~~edvl~~~~~~id~kelr~~~-~~g~p~~~~lR~~~WkllL~Yl~~er~~w~--s~La~~R~~Y~q~i~e~v~epg~~~ 87 (370)
T KOG4567|consen 11 SIEDVLNPADDTIDLKELRKLC-FYGVPDDASLRPLVWKLLLGYLPPERSKWT--SFLAKKRSLYKQFIEEIVDEPGKKD 87 (370)
T ss_pred hHHHhhccccchhhHHHHHHHh-hcCCCCccchhHhHHHHHHhhcChhhhhhH--HHHHHHHHHHHHHHHHhccCccccc
Confidence 4555555544558999999999 58898 68999999999999999888874 4455677888777665422100
Q ss_pred ---------------------HHHhhhhhhhhhccccccccccCCCCCCCCCCCCC------------------------
Q 008793 408 ---------------------EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN------------------------ 442 (553)
Q Consensus 408 ---------------------~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~------------------------ 442 (553)
.....+.+..+...||++||.||.|...+|+....
T Consensus 88 ~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~ 167 (370)
T KOG4567|consen 88 NSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRL 167 (370)
T ss_pred cccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhccc
Confidence 11123334456778999999999999999875321
Q ss_pred -chhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcC----------CHHHHHHHHHHHHHHhccCCCCC----hHHH
Q 008793 443 -PNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------DESQSFWCFVALMERLGPNFNRD----QNGM 507 (553)
Q Consensus 443 -~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~----------dE~~AFw~f~~Lm~~~~~~F~~~----~~g~ 507 (553)
.......|||..||..||.+|||||||.|+||||+|+. .|+|||+||+.||..+++||.++ ..|+
T Consensus 168 gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI 247 (370)
T KOG4567|consen 168 GLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGI 247 (370)
T ss_pred chhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccch
Confidence 11234578999999999999999999999999999994 39999999999999999998652 3589
Q ss_pred HHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 508 HSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 508 ~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
+..|..+.++|+.+|-+||.||+..+|.|.+|+||||.+|+++||
T Consensus 248 ~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF 292 (370)
T KOG4567|consen 248 HFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEF 292 (370)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccC
Confidence 889999999999999999999999999999999999999999998
No 7
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-34 Score=309.16 Aligned_cols=229 Identities=52% Similarity=0.873 Sum_probs=210.9
Q ss_pred CCCCCCCcHHHHHHhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHH
Q 008793 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 402 (553)
Q Consensus 323 ~~r~~~lt~~~W~~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~ 402 (553)
.++.+.++.++|......+|++......+..++++|+-+.+|+++|++++++++|+.+..+|...... ..+|...+.+|
T Consensus 142 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW 220 (488)
T KOG2197|consen 142 DNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQW 220 (488)
T ss_pred cCCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhh
Confidence 35566689999999998889887666666689999998899999999999999999999998777777 99999999999
Q ss_pred hhCChHHHhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCH
Q 008793 403 QSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 482 (553)
Q Consensus 403 ~~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE 482 (553)
......+......+.+....|.+||.||++.+.+|....+++...|.+||.+|+++|+++||||||+|+++||+.++.+|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de 300 (488)
T KOG2197|consen 221 SSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDE 300 (488)
T ss_pred eeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCc
Confidence 98877766555546677789999999999999999987777789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 483 SQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 483 ~~AFw~f~~Lm~~~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
.+|||||++||+++..||..++.||..++..+..+++..||.||+||++.+....+|||||++++|+|||
T Consensus 301 ~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf 370 (488)
T KOG2197|consen 301 VEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREF 370 (488)
T ss_pred hHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998
No 8
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=8.7e-31 Score=286.93 Aligned_cols=208 Identities=32% Similarity=0.542 Sum_probs=176.4
Q ss_pred CCCcHHHHHHhhhcCCCC---CChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHh
Q 008793 327 PPLGSEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (553)
Q Consensus 327 ~~lt~~~W~~~~~~~g~~---~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~ 403 (553)
.+.....|.+.++..+.. ....+++.++ +.|||+.+|+.||.+++|++++.. .....|..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~----------~~~~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLD----------KNPGLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhc----------cCchHHHHHHHHHH
Confidence 455678899999887762 5788999998 678999999999999999977533 24556665554333
Q ss_pred hCChHHHhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHH
Q 008793 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 483 (553)
Q Consensus 404 ~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~ 483 (553)
..... ......+|++||.||+|.+..|+.+.+.+.+.|+|||.+|+.+||++||||||++|+|+||++|..|+
T Consensus 248 ~~~~~-------~~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee 320 (496)
T COG5210 248 EAKIP-------TQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEE 320 (496)
T ss_pred hcCCC-------cHHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhH
Confidence 22111 00345699999999999999999877665556999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHH--hccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 484 QSFWCFVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 484 ~AFw~f~~Lm~~--~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
.|||||++||+. +..+|..+++|+..++.++..+++.++|+||+||+..++...+|+++||+++|.++|
T Consensus 321 ~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~ 391 (496)
T COG5210 321 QAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREF 391 (496)
T ss_pred HHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcC
Confidence 999999999993 556789999999999999999999999999999999999999999999999999987
No 9
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-30 Score=265.30 Aligned_cols=202 Identities=27% Similarity=0.473 Sum_probs=178.6
Q ss_pred CCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHhhhhhhhhhccc
Q 008793 343 RVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (553)
Q Consensus 343 ~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~ 422 (553)
..++.++||+++ ++|||...|+.+|+.|+|+.|.++.. |+...+.++.+|.+++.++........ .-.+..+|
T Consensus 174 ~~id~~~Lr~l~-w~Gvp~~~Rp~~Wkll~gylp~n~~r--r~~~l~~Kr~eY~~~v~~~~~~~~~~~----~~~d~~rQ 246 (484)
T KOG1092|consen 174 PIIDLEKLRKLC-WNGVPSKMRPIVWKLLSGYLPPNSDR--REGTLQRKRKEYVDSVVQYFDSLTNGD----EDQDTWRQ 246 (484)
T ss_pred ccccHHHHHHHc-cCCCCccccCccceeeecccCcchhh--hhhhHHHHHHHHHHHHHHHhccCCCcc----ccCccccc
Confidence 348899999998 89999999999999999999976543 366777889999999988876533211 12344579
Q ss_pred cccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcC----------------------
Q 008793 423 IDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------------------- 480 (553)
Q Consensus 423 IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~---------------------- 480 (553)
|..|++||.|+.+.|..+- -++.+.+||+.+++++|..||+||.||++.|++.++.
T Consensus 247 I~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~ 324 (484)
T KOG1092|consen 247 IPIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAEN 324 (484)
T ss_pred cccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHH
Confidence 9999999999999998643 5589999999999999999999999999999998772
Q ss_pred ---CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhcC
Q 008793 481 ---DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRIIF 553 (553)
Q Consensus 481 ---dE~~AFw~f~~Lm~~~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF~ 553 (553)
-|++||||+.+|++.+.+||...|+||+.++..|++|++..|+.|++||+++|++-+.|+|||+-|||.|||.
T Consensus 325 ~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~p 400 (484)
T KOG1092|consen 325 AEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFP 400 (484)
T ss_pred HhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhcc
Confidence 2999999999999999999999999999999999999999999999999999999999999999999999984
No 10
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=3.7e-27 Score=239.98 Aligned_cols=209 Identities=23% Similarity=0.380 Sum_probs=165.7
Q ss_pred HHHH-HhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHH-HHHHHhcHHHHHHHHHHHhhCChHH
Q 008793 332 EEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER-EYLRCIKKSEYENIKRQWQSISPEQ 409 (553)
Q Consensus 332 ~~W~-~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er-~~~~~~~~~~Y~~l~~~~~~~~~~~ 409 (553)
..|. +++.+|....+...+|.+. |.|||+.+|++||....|. ..+-|.+-- ..+...+..+...+-++...
T Consensus 275 ~vW~~eILpnWe~m~~SrR~relW-wQGiP~~VRGkvW~laIGN-el~it~elfd~~la~Aker~ak~~aeq~~~----- 347 (586)
T KOG2223|consen 275 NVWENEILPNWEDMLKSRRVRELW-WQGIPPSVRGKVWSLAIGN-ELNITYELFDIALARAKEREAKSLAEQMSN----- 347 (586)
T ss_pred HHHHHHhccchHHHHhhHHHHHHH-HccCChhhcchhhHhhhCc-ccccCHHHHHHHHHHHHHHHHHHHHhhccc-----
Confidence 3465 4444555556677888865 8999999999999999997 233333321 12222222223333333221
Q ss_pred HhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHH
Q 008793 410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 489 (553)
Q Consensus 410 ~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f 489 (553)
.-.+.+....+|+.|+.||||++.+|+. .+|..+.|..||.+|++|.||+||||||++|+|+|++.| |+++||.||
T Consensus 348 --sa~~re~sv~~i~LDisrTfpsl~iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiaf 423 (586)
T KOG2223|consen 348 --SAADREASVELIKLDISRTFPSLSIFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAF 423 (586)
T ss_pred --chhhhhcchhheeechhccCcceeeecc-CCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHH
Confidence 1122344567999999999999999997 679999999999999999999999999999999999999 689999999
Q ss_pred HHHHHHhcc--CCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhh
Q 008793 490 VALMERLGP--NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRI 551 (553)
Q Consensus 490 ~~Lm~~~~~--~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rE 551 (553)
.+|+++-+. .|.-|.+.|..++..|+..++...|+|+.||.++++.|..|.+.|+.++|+..
T Consensus 424 ANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlysks 487 (586)
T KOG2223|consen 424 ANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKS 487 (586)
T ss_pred HHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhcc
Confidence 999998553 57788999999999999999999999999999999999999999999999864
No 11
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.94 E-value=1.7e-27 Score=231.85 Aligned_cols=177 Identities=35% Similarity=0.597 Sum_probs=136.5
Q ss_pred hhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHhhhhhhhhhccccccccccCCCCCCCCCCC
Q 008793 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 440 (553)
Q Consensus 361 ~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~ 440 (553)
+++|+.||+.|+|+.+ ... ..|.....++...............+...+|++||.||+++...+.
T Consensus 1 ~~~R~~vW~~ll~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~-- 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP----NYS---------NNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK-- 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC----HHH---------HHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred CChHHHHHHHHHccch----hhh---------hhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence 3689999999999966 111 1111111111111111111112223446799999999999554444
Q ss_pred CCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHHHHHH-HHhccCCCCChHHHHHHHHHHHHHHH
Q 008793 441 DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM-ERLGPNFNRDQNGMHSQLFALSKLVE 519 (553)
Q Consensus 441 ~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm-~~~~~~F~~~~~g~~~~l~~l~~LLq 519 (553)
...++..|.+||.+|+.++|++||||||++|++++++++.+|++|||||+++| ......|..+.+++...+..++.+++
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 145 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLK 145 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHH
Confidence 45788999999999999999999999999999999988889999999999999 45666778888899999999999999
Q ss_pred HHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 520 LLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 520 ~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
.++|+|++||++.++.+..|+++|++++|+++|
T Consensus 146 ~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l 178 (214)
T PF00566_consen 146 KHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSL 178 (214)
T ss_dssp HHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcC
Confidence 999999999999999999999999999999876
No 12
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=222.89 Aligned_cols=195 Identities=25% Similarity=0.446 Sum_probs=166.1
Q ss_pred HHHhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHhhh
Q 008793 334 WTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRF 413 (553)
Q Consensus 334 W~~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~ 413 (553)
|+.+. |.....+++++++-.||||+.+|+..|+.|.|... .++.....|+.+.++.......
T Consensus 149 w~hi~---~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~----------kkk~ae~sy~~ilk~~andk~~----- 210 (848)
T KOG2222|consen 149 WEHID---GMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALA----------KKKDAETSYEDILKACANDKLM----- 210 (848)
T ss_pred HHhhc---ccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhh----------hhccccccHHHHHHHhcccccc-----
Confidence 55443 55567889999998899999999999999999843 2223345678777664332211
Q ss_pred hhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHHHHHH
Q 008793 414 TKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM 493 (553)
Q Consensus 414 ~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm 493 (553)
.-.||++|+-|+.|++.-|..+++.+...|+|||.+.++..||+||||||.-|+|.+|+.+. |+.|||++..++
T Consensus 211 -----~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaaii 284 (848)
T KOG2222|consen 211 -----IGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAII 284 (848)
T ss_pred -----hhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHHH
Confidence 22489999999999999999999999999999999999999999999999999999999995 789999999999
Q ss_pred HHhcc-CCC-CChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 494 ERLGP-NFN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 494 ~~~~~-~F~-~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
+.+.| +|+ ...-|++..-.++..|+.-+.|.|-+.|+.++++..+....||+|||...|
T Consensus 285 edilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~ 345 (848)
T KOG2222|consen 285 EDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVF 345 (848)
T ss_pred HHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHH
Confidence 99875 554 456699999999999999999999999999999999999999999998765
No 13
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=209.98 Aligned_cols=196 Identities=23% Similarity=0.369 Sum_probs=167.7
Q ss_pred HHHHHHhhhcCCCCCC---hHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCCh
Q 008793 331 SEEWTTFLDNEGRVMD---SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 407 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~---~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~ 407 (553)
...|++++.+.|+.+. ..++++++ +.|+|...|+++|....|. .+-...+..+|.++......
T Consensus 173 ~k~W~~~f~~~G~~~~~~qt~~~~Klv-~~gipe~~rgeiW~l~sGa----------v~~~l~~~Geygkll~~~~G--- 238 (671)
T KOG4347|consen 173 EKFWKKYFIKDGPNMNQIQTILLRKLL-YNGFPEDPRGEIWYLASGA----------VASLLLNPGEYGKLLHSVTG--- 238 (671)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHH-HHhcCCChHHHHHHhhhHH----------HHHhhcCcHHhhhhhhcccC---
Confidence 3569999999998865 57889988 7999999999999999997 44556788999988765432
Q ss_pred HHHhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHH
Q 008793 408 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 487 (553)
Q Consensus 408 ~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw 487 (553)
+.....+.|++|..|..|.++-|+.+. +...|+|||.+|++.||+|||||-||-+++.+|+.+ .|+.|||
T Consensus 239 -------~~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafw 308 (671)
T KOG4347|consen 239 -------KRSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFW 308 (671)
T ss_pred -------CcccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHH
Confidence 122334589999999999999999754 559999999999999999999999999999999888 5889999
Q ss_pred HHHHHHHHhccCCC-CChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhh
Q 008793 488 CFVALMERLGPNFN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRI 551 (553)
Q Consensus 488 ~f~~Lm~~~~~~F~-~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rE 551 (553)
+++.+.+++.+.|+ ...-|......+++.|++...|.|++|+...+ ........||+++|--.
T Consensus 309 ll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~ 372 (671)
T KOG4347|consen 309 LLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSL 372 (671)
T ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHH
Confidence 99999999998754 55668888888899999999999999999999 56689999999999643
No 14
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=211.69 Aligned_cols=201 Identities=24% Similarity=0.416 Sum_probs=166.6
Q ss_pred HHHHHhhhcCCCC---CChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChH
Q 008793 332 EEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (553)
Q Consensus 332 ~~W~~~~~~~g~~---~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 408 (553)
..|++++.. ++. .+.+.+-..+ ..|||..-|+++|.+|.-.+-.+..... .+.-..--|+.+.++
T Consensus 550 ~~wek~~e~-~~~~~k~d~ed~~~~l-~~gvprsrrgeiwtflA~q~~~~~~l~~---~kr~~~~p~~~llkq------- 617 (948)
T KOG4436|consen 550 ETWEKILER-TRIKIKKDMEDLHSAL-RTGVPRSRRGEIWTFLAEQHSLNHALPD---KKRPPDFPYKELLKQ------- 617 (948)
T ss_pred HHHHHHHHH-hhhcccccHHHHHHHH-HccCchhhhHHHHHHHHHHHHHhccCCc---ccCCCCCChHHHHHH-------
Confidence 679999876 443 5888888887 8999999999999999753211110000 000011224444443
Q ss_pred HHhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHH
Q 008793 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (553)
Q Consensus 409 ~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~ 488 (553)
+.+..+.|-.|.-||||+|++|..+-+.++..|.|+|.+|+..+|++|||||..++|++||+.| +|+.||-+
T Consensus 618 -------Lte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afel 689 (948)
T KOG4436|consen 618 -------LTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFEL 689 (948)
T ss_pred -------HHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHH
Confidence 4455678999999999999999999999999999999999999999999999999999999999 68999999
Q ss_pred HHHHHHH--hccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 489 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 489 f~~Lm~~--~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
+..||-. ++..|.+++..++.++++|..+++.+.+.||+||++++|.|..|+..||+|.|+--|
T Consensus 690 lk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf 755 (948)
T KOG4436|consen 690 LKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQF 755 (948)
T ss_pred HHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhC
Confidence 9999976 445699999999999999999999999999999999999999999999999999766
No 15
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.1e-21 Score=183.05 Aligned_cols=190 Identities=21% Similarity=0.392 Sum_probs=157.9
Q ss_pred HHHHHHhhhcCCCCC--ChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChH
Q 008793 331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~--~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 408 (553)
+.+|..++++|...+ ..++++.+| ++|||+.+|+.+|.+|.|.+-.. ..++..|..+..+ +.
T Consensus 75 eskwL~mldnw~~~m~kk~~~ir~rc-rkgippslr~Raw~ylsGa~~~~----------~~np~~~~~~~~~-----pG 138 (267)
T KOG2221|consen 75 ESKWLHMLDNWHEEMRKKQKKIRPRC-RKGIPPSLRGRAWRYLSGAPSPP----------PKNPVVFDELGPA-----PG 138 (267)
T ss_pred HHHHHHHHHHHHHHHHhccccccchh-hcCCCcccchhHHHhhcCCCCCC----------CCCcchhhhccCC-----CC
Confidence 367877777654433 456788898 89999999999999999985431 2245555543321 11
Q ss_pred HHhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHH
Q 008793 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (553)
Q Consensus 409 ~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~ 488 (553)
.. ...+-|++|++|-||.+.+|......+.+.|.|+|.+|.+|+|+.||||+-.-|+|+++..+. +.+||||
T Consensus 139 ~p-------~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~ 210 (267)
T KOG2221|consen 139 DP-------KTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWC 210 (267)
T ss_pred CC-------cchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHH
Confidence 11 123479999999999999999888888999999999999999999999999999999999996 6799999
Q ss_pred HHHHHHHhccC-CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHH
Q 008793 489 FVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWV 544 (553)
Q Consensus 489 f~~Lm~~~~~~-F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ 544 (553)
|+.+.+.+.+. |..+...+...-.+|..|+++.+|..|.||....+++.+|...||
T Consensus 211 ~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 211 FVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 99999998875 566788888888999999999999999999999999999999997
No 16
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.79 E-value=4.9e-19 Score=186.60 Aligned_cols=182 Identities=20% Similarity=0.345 Sum_probs=145.5
Q ss_pred CCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHhhhhhhhhhcc
Q 008793 342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 421 (553)
Q Consensus 342 g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~ 421 (553)
|-......+.+.. ++++|+-+|+-+|..||++-. .....|..+. ...+. ...+
T Consensus 340 g~~~k~~qI~r~a-~vdvpp~~R~~iW~aLL~l~e-------------~~~a~y~~ID-k~Ts~------------~tdr 392 (725)
T KOG1093|consen 340 GYPKKRLQILREA-YVDVPPLYRGFIWAALLQLEE-------------NHTAFYTLID-KGTSH------------STDR 392 (725)
T ss_pred cchHHHHHHHHHh-ccCCChhHhHHHHHHHhcCcc-------------ccchhhhhhh-cCCCC------------cchh
Confidence 3333344444444 789999999999999998721 1233343321 11111 1235
Q ss_pred ccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHh-cCCHHHHHHHHHHHHHHhccC-
Q 008793 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFV-MEDESQSFWCFVALMERLGPN- 499 (553)
Q Consensus 422 ~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v-~~dE~~AFw~f~~Lm~~~~~~- 499 (553)
|||.|++|+.......+.+. +++.|+|+|.+++..+|..-|.||...||+|+++. +.+|+.||-|+..|+-+++.+
T Consensus 393 qievdiprchQyd~~lsSp~--~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~f 470 (725)
T KOG1093|consen 393 QIEVDIPRCHQYDELLSSPK--GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHF 470 (725)
T ss_pred hhhcccchhhhcccccCCHH--HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999987776666543 66999999999999999999999999999998765 678999999999999998875
Q ss_pred CCCCh-HHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 500 FNRDQ-NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 500 F~~~~-~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
|.+|. .-++..+..|.+++..+||+|++||..+|+.+.+|+..||+|+|+.+|
T Consensus 471 flkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvl 524 (725)
T KOG1093|consen 471 FLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVL 524 (725)
T ss_pred HhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhc
Confidence 56644 478889999999999999999999999999999999999999999986
No 17
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.3e-18 Score=181.63 Aligned_cols=189 Identities=26% Similarity=0.342 Sum_probs=136.5
Q ss_pred hhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhC---------------------ChHHHhhhhhhhhh
Q 008793 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI---------------------SPEQARRFTKFRER 419 (553)
Q Consensus 361 ~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~---------------------~~~~~~~~~~~~e~ 419 (553)
..+|+.+|+.+||+.|.+.+.+.-. ....+..|..++..+... +.....+|....|.
T Consensus 27 s~~Rgv~Wrl~L~vLp~~~ss~id~--~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL 104 (625)
T KOG1091|consen 27 SNLRGVRWRLLLGVLPSENSSWIDN--LRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAEL 104 (625)
T ss_pred hhhhhHHHHHhheecCCCchhHHHH--HHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHH
Confidence 3579999999999999886655321 223344555543333211 11122344444567
Q ss_pred ccccccccccCCCCC-CCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCC-----------------
Q 008793 420 KGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------------- 481 (553)
Q Consensus 420 ~~~IekDV~RT~~~~-~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~d----------------- 481 (553)
...|++||.||||.+ .+|+.+. -+..|++||..||..+|.+||-|||++|+||+++|..-
T Consensus 105 ~~~i~qDvsRtfPe~~~fFqs~~--~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 105 EKTIDQDVSRTFPEHSLFFQSPE--VQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HHhhcchhhccCcchhhhhcCch--hhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 789999999999999 6777644 44899999999999999999999999999999988731
Q ss_pred -------------HHHHH--HHHHHHHHHhcc------------------------CCCCChHHHHHHHHHHHHHHHHHc
Q 008793 482 -------------ESQSF--WCFVALMERLGP------------------------NFNRDQNGMHSQLFALSKLVELLD 522 (553)
Q Consensus 482 -------------E~~AF--w~f~~Lm~~~~~------------------------~F~~~~~g~~~~l~~l~~LLq~~d 522 (553)
+.+++ -.|+.+|..-.. .+....+-+......+..++...|
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 22333 245555532111 112223345566677899999999
Q ss_pred HHHHHHHHHCCCCcchhhHHHHHHHHHhhcC
Q 008793 523 NPLHNYFKQNDCLNYFFCFRWVLIQFKRIIF 553 (553)
Q Consensus 523 P~L~~hL~~~~i~~~~f~~rW~ltlF~rEF~ 553 (553)
+.|+.||...+|.|.+|..||+.+||-|||.
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfp 293 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFP 293 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchhH
Confidence 9999999999999999999999999999983
No 18
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.74 E-value=2.6e-18 Score=182.62 Aligned_cols=183 Identities=26% Similarity=0.413 Sum_probs=146.6
Q ss_pred ChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHhhhhhhhhhcccccc
Q 008793 346 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDK 425 (553)
Q Consensus 346 ~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~Iek 425 (553)
...++...+ ..|||..+|+.+|..+++.-- +.........|. .++....+ ....+| +
T Consensus 134 ~~~~l~~~~-~~gip~~~r~~~W~l~~~~~~--------~~~~~~~~~l~~---~~~~~~~~----------~~~~~~-~ 190 (397)
T KOG1102|consen 134 RPLKLSRRV-LVGIPDELRGLVWQLLLYAVE--------ESLFDSLDELYR---LQLDEPEP----------HESEII-R 190 (397)
T ss_pred cHHHHHHHh-hccccHHHHHHHHHHhcccHh--------hhhhhhHHHHHH---HhhccCCC----------chhHHH-h
Confidence 456676666 799999999999999998510 000011111111 11111111 011356 9
Q ss_pred ccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHHHHHHHHhc-cCCCCCh
Q 008793 426 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG-PNFNRDQ 504 (553)
Q Consensus 426 DV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~-~~F~~~~ 504 (553)
|+.||+|.+..|....+.+++.|.+||.+|+.+++++||||||..++++++.++. |++|||.++.+|.... ..|..++
T Consensus 191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~~ 269 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPGF 269 (397)
T ss_pred hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhcccccC
Confidence 9999999999999888888999999999999999999999999999999999996 8999999999998653 4456677
Q ss_pred HHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 505 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 505 ~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
.|+...+..+..+++...|.++.|+...++...+|+..|++|+|+-.|
T Consensus 270 ~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~ 317 (397)
T KOG1102|consen 270 SGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKF 317 (397)
T ss_pred CchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccc
Confidence 899999999999999999999999999999999999999999998654
No 19
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-16 Score=159.54 Aligned_cols=181 Identities=19% Similarity=0.205 Sum_probs=136.7
Q ss_pred CChHHHHHHHHcC-C-CChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHhhhhhhhhhccc
Q 008793 345 MDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (553)
Q Consensus 345 ~~~~~Lr~~i~~~-G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~ 422 (553)
.+++.||..-... | +.+++|+.||+.|+|..-.... ...|.+..+. ....+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~-----------~~~~~~~~q~---------------hkd~nQ 99 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD-----------ATSTLTPVQK---------------HKDYNQ 99 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc-----------ccccCChhhh---------------Ccccce
Confidence 6888898876432 3 5899999999999997432211 1111111111 112359
Q ss_pred cccccccCCCCCCCCCC--CCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHHHHHHHHhccCC
Q 008793 423 IDKDVVRTDRSVTFFDG--DDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNF 500 (553)
Q Consensus 423 IekDV~RT~~~~~~f~~--~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~~F 500 (553)
+..||+|++...+.--. .....++.|..++..-...+|.+.|.||.+|||..+|+++. |.+|+-...+|-....++|
T Consensus 100 V~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~~lrdf 178 (395)
T KOG2595|consen 100 VILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTLHLRDF 178 (395)
T ss_pred EEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHHHHHHH
Confidence 99999999866542111 01234566777777777889999999999999999999995 8999999888886655555
Q ss_pred -CCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhcC
Q 008793 501 -NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRIIF 553 (553)
Q Consensus 501 -~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF~ 553 (553)
.+.+.+...++..+..+++..+|+||+.|++.++++ +|+..|++|||++.++
T Consensus 179 M~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~ 231 (395)
T KOG2595|consen 179 MLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLK 231 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcch
Confidence 466778889999999999999999999999999998 9999999999998764
No 20
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.24 E-value=2.6e-11 Score=132.87 Aligned_cols=196 Identities=18% Similarity=0.277 Sum_probs=158.2
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHh
Q 008793 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 411 (553)
Q Consensus 332 ~~W~~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 411 (553)
+.|+..-. ....+|+.+| .+|+|+..|-.+|..|+.... .+ .....+.|.+++.. +..+++
T Consensus 164 ~~~E~~r~-----~s~~~l~e~V-e~~~p~~frli~~qlLssatd-----~~----q~~I~e~~sdl~~~----s~~~Ek 224 (948)
T KOG4436|consen 164 DLWERCRK-----KSLHKLKELV-EGGIPMHFRLIRWQLLSSATD-----RE----QALIFEDYSDLAPC----SSQQEK 224 (948)
T ss_pred hhhhhhhh-----hchhhhHHHH-hcCCchHHHHHHHHHhccccc-----ch----hhHHHHHHHHHhhh----cchhhh
Confidence 46655432 3567899998 999999999999999998622 11 11234566666543 222222
Q ss_pred hhhhhhhhccccccccccCCCCCCCCCCCCCc-------hhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHH
Q 008793 412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 484 (553)
Q Consensus 412 ~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~-------~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~ 484 (553)
......|..|+.||.+.+.+|+..... .++.|+|+..+|....-++|||||-+.+++.++..+ +++.
T Consensus 225 -----~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~ 298 (948)
T KOG4436|consen 225 -----ELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEE 298 (948)
T ss_pred -----hHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHH
Confidence 122347899999999999999986655 689999999999999999999999999999999999 5889
Q ss_pred HHHHHHHHHHHhc--cCCCCChHHHHHHHHHHHHHHHHHcH-HHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 485 SFWCFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDN-PLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 485 AFw~f~~Lm~~~~--~~F~~~~~g~~~~l~~l~~LLq~~dP-~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
+|-.++.+|..++ ..|.+.+..+...+..++...+...| .|+.|+.+......++.-.||++.|.--|
T Consensus 299 assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~ 369 (948)
T KOG4436|consen 299 ASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTF 369 (948)
T ss_pred HHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccC
Confidence 9999999998654 56778788888889999999999999 99999999999999999999999997543
No 21
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=91.06 Aligned_cols=125 Identities=20% Similarity=0.324 Sum_probs=90.0
Q ss_pred ccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccc--cchhhHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q 008793 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ--GMSDLLSPILFVMEDESQSFWCFVALMERLGPN 499 (553)
Q Consensus 422 ~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQ--GM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~~ 499 (553)
+|.+|..|---....-..+..+.+-.|..++.-|+. +.++.|.. |...|+-||+..--+-.+.|-||.++|+.+.|.
T Consensus 69 ~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPk 147 (669)
T KOG3636|consen 69 ALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPK 147 (669)
T ss_pred HHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCC
Confidence 455665554322222222233445578888888875 33555654 556788888777667789999999999998874
Q ss_pred CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHh
Q 008793 500 FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKR 550 (553)
Q Consensus 500 F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~r 550 (553)
=.+- .| .-+..|+-||+.++|+|+.||....|+|.+|+..||-+||+-
T Consensus 148 dcrp-kg--~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas 195 (669)
T KOG3636|consen 148 DCRP-KG--QIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFAS 195 (669)
T ss_pred CCCC-CC--ccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHH
Confidence 3221 11 246678999999999999999999999999999999999975
No 22
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=97.53 E-value=7.4e-05 Score=81.83 Aligned_cols=83 Identities=36% Similarity=0.645 Sum_probs=73.2
Q ss_pred CCCCCCCcHHHHHHhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHH
Q 008793 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 402 (553)
Q Consensus 323 ~~r~~~lt~~~W~~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~ 402 (553)
+.+..+++.++|.+.|+.+|.+.+..++-+++..+||++.+|++||.+|+|.|+.+++.++|..+....+..|..+..+.
T Consensus 42 ~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c 121 (488)
T KOG2197|consen 42 IKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVC 121 (488)
T ss_pred eccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHc
Confidence 35567888999999999999988766766778899999999999999999999999999999999999999999988876
Q ss_pred hhC
Q 008793 403 QSI 405 (553)
Q Consensus 403 ~~~ 405 (553)
..+
T Consensus 122 ~~~ 124 (488)
T KOG2197|consen 122 QMM 124 (488)
T ss_pred chh
Confidence 654
No 23
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=93.70 E-value=0.02 Score=60.12 Aligned_cols=34 Identities=59% Similarity=1.096 Sum_probs=31.9
Q ss_pred CcccccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Q 008793 462 LGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 495 (553)
Q Consensus 462 lGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~ 495 (553)
+|..|||+|++||||.-..||.++||||++||..
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 6899999999999999888999999999999984
No 24
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=0.56 Score=47.29 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=95.0
Q ss_pred ChHHHHHHHHcCCC---ChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHhhhhhhhhhccc
Q 008793 346 DSNALRKRIFYGGV---DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (553)
Q Consensus 346 ~~~~Lr~~i~~~GI---p~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~ 422 (553)
...+||++. +.|- .+.+|++|+..|..-.|...- .-...-|.++......--...--. +.+ -
T Consensus 31 elqelkqla-rqgywaqshalrgkvyqrlirdipcrtv--------tpdasvysdivgkivgkhsssclp---lpe---f 95 (559)
T KOG2801|consen 31 ELQELKQLA-RQGYWAQSHALRGKVYQRLIRDIPCRTV--------TPDASVYSDIVGKIVGKHSSSCLP---LPE---F 95 (559)
T ss_pred hHHHHHHHH-hcchHHhhhhhhhHHHHHHHhcCCcccc--------CCchhHHHHHHHHHhccCCccccc---chh---h
Confidence 467888877 6665 678999999999987664211 112345555443321100000000 000 0
Q ss_pred cccccccC-CCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHHHHHHHHhcc--C
Q 008793 423 IDKDVVRT-DRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGP--N 499 (553)
Q Consensus 423 IekDV~RT-~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~--~ 499 (553)
+ | .| .|.. .- +..+....+.||.+.+..-|+|.+|..+..++|.+|-+.-||+++|---++++.---+ .
T Consensus 96 v--d--ntqvpsy--cl--nargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrr 167 (559)
T KOG2801|consen 96 V--D--NTQVPSY--CL--NARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRR 167 (559)
T ss_pred c--c--cCcCchh--hh--cCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchh
Confidence 0 0 01 1111 11 1223467899999999999999999999999999998888999988766655431111 1
Q ss_pred CC-CChHHHHHHHHHHHHHHHHHcHHHHHHHHHC
Q 008793 500 FN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQN 532 (553)
Q Consensus 500 F~-~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~ 532 (553)
.. ...-.....+.+|..|+.++...-++.+-..
T Consensus 168 lidqsflafesscmtfgdlvnkycqaahklmvav 201 (559)
T KOG2801|consen 168 LIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAV 201 (559)
T ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 11 1112445556667777777666655555433
No 25
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=67.17 E-value=35 Score=28.02 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=42.6
Q ss_pred cCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCC--cCCceee
Q 008793 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL--AFPPLYF 141 (553)
Q Consensus 64 I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~dG~--~~P~L~F 141 (553)
.+|.|.|.... -.+.|+|+.... .. ..+|++.+|..+++.|++..---+-|+.+++. .--.++|
T Consensus 12 ~~G~L~l~~d~--~~~~W~~~~~~~----------~~--~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 12 KDGTLTLTEDR--KPLEWTPKASDG----------PS--TVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEEETTC--SSEEEEECCSSS----------SS--EEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CCcEEEEecCC--ceEEEeecCCCC----------Cc--eEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 56999997542 247888853322 11 26799999999999999766566788888873 3455666
Q ss_pred c
Q 008793 142 Y 142 (553)
Q Consensus 142 ~ 142 (553)
+
T Consensus 78 ~ 78 (79)
T PF08567_consen 78 T 78 (79)
T ss_dssp -
T ss_pred e
Confidence 5
No 26
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=59.40 E-value=9.4 Score=32.39 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=27.8
Q ss_pred eeeeCCCeeEEEEeCCC-CCceEEEEEeCCCC
Q 008793 104 RAVPFTEVRSIRRHTPA-FGWQYIIVVLSSGL 134 (553)
Q Consensus 104 ~~v~ls~i~si~~~~p~-~g~~~~il~~~dG~ 134 (553)
..|||++|..|..++|. .+.+||.|++++|.
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcC
Confidence 57999999999999996 77999999999865
No 27
>PF14961 BROMI: Broad-minded protein
Probab=51.38 E-value=63 Score=39.32 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=70.9
Q ss_pred hhHhhhhhhheeecCCCcccccchhhHHHHHHhc-CCHHHHHHHHHHHHHHhccCC-----------CCC---hHHHH--
Q 008793 446 HLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM-EDESQSFWCFVALMERLGPNF-----------NRD---QNGMH-- 508 (553)
Q Consensus 446 ~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~-~dE~~AFw~f~~Lm~~~~~~F-----------~~~---~~g~~-- 508 (553)
....+||..|..+...=+|. |..-.++.+++++ .|-+.+.-++.+|-..+...| .+. .+||.
T Consensus 1084 ~s~l~~~~~~~~~~~~~~y~-g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~ 1162 (1296)
T PF14961_consen 1084 KSSLHILFEFIHFCLQGSYP-GHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPV 1162 (1296)
T ss_pred cchhHHHhhhhcccCCCCCC-CchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCch
Confidence 44556777776666665664 8888888887777 444455554444444332111 111 12332
Q ss_pred --HHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHh
Q 008793 509 --SQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKR 550 (553)
Q Consensus 509 --~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~r 550 (553)
.-+..++.+|+...|.+|.-|...|..+...|.||+.-+|=.
T Consensus 1163 ~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWn 1206 (1296)
T PF14961_consen 1163 YFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWN 1206 (1296)
T ss_pred hhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhh
Confidence 245779999999999999999999999999999999988743
No 28
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=40.02 E-value=57 Score=30.03 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=21.7
Q ss_pred CeeEEEEeCCCCCceEEEEEe---CCCCcCCceee
Q 008793 110 EVRSIRRHTPAFGWQYIIVVL---SSGLAFPPLYF 141 (553)
Q Consensus 110 ~i~si~~~~p~~g~~~~il~~---~dG~~~P~L~F 141 (553)
-+..|-++.| .|.+-+|..- .||..+|.||.
T Consensus 20 gvl~I~~rcp-~g~P~VV~t~p~l~dg~PfPTly~ 53 (167)
T COG1507 20 GVLKIAYRCP-YGEPGVVKTAPKLDDGTPFPTLYY 53 (167)
T ss_pred CceEEEEECC-CCCceEEeecCCCCCCCcCCceee
Confidence 4556777777 4555555443 49999999999
No 29
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=35.18 E-value=2.1e+02 Score=23.79 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=31.0
Q ss_pred cccCceEEEEee-CCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEE
Q 008793 62 ERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYII 127 (553)
Q Consensus 62 ~~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~i 127 (553)
+.-+|.|.|.+. ++-+.+.|.|-+..+. .-..+-|.-.|..-.++.+...|.=|+.
T Consensus 13 d~~KG~l~l~~~~d~l~~f~W~~r~~~~~----------~e~d~il~pg~~~f~~V~~c~tGRVy~L 69 (85)
T PF04683_consen 13 DPRKGLLYLYKSEDGLLHFCWKPRDTTGE----------VEDDLILFPGDATFKKVPQCKTGRVYVL 69 (85)
T ss_dssp -SS-EEEEEEETTTS-EEEEEEETST-------------EEEEEEE-TTTEEEEE-TTSSTS-EEEE
T ss_pred CCCCEEEEEEECCCCeEEEEEEEcCcCCC----------cccceecCCCCeEEEECCcCCCCeEEEE
Confidence 457899999984 5789999999654210 0112334446666666655566766653
No 30
>PF07024 ImpE: ImpE protein; InterPro: IPR009211 This entry contains proteins of unknown function that occur in bacteria that interact with and manipulate eukaryotic cells []. Salmonella enterica protein SciE is encoded in the centisome 7 genomic island (SCI) []. Deletion of the entire island affects the ability of bacteria to enter eukaryotic cells []. Therefore, SciE and other SCI proteins may be involved in virulence. Interestingly, another member of this family, Rhizobium leguminosarum protein ImpE, has been reported to be encoded by an avirulence locus involved in temperature-dependent protein secretion []. It is believed that the imp locus is involved in the secretion to the environment of proteins, including periplasmic RbsB protein, that cause blocking of R. leguminosarum infection in plants [].; PDB: 1ZBP_A.
Probab=25.53 E-value=67 Score=28.79 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=22.3
Q ss_pred eeCCCeeEEEEeCCCC----CceEEEEEeCCCCc
Q 008793 106 VPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA 135 (553)
Q Consensus 106 v~ls~i~si~~~~p~~----g~~~~il~~~dG~~ 135 (553)
||+++|.||++.+|.. =|.-..|.++||..
T Consensus 30 vPf~~I~~l~~~~p~~l~DlvWrpa~i~l~dG~~ 63 (123)
T PF07024_consen 30 VPFSRIASLEFEPPASLRDLVWRPAEITLRDGGE 63 (123)
T ss_dssp EEGGGEEEEEE----SSGGGTEEEEEEEETTTEE
T ss_pred EEHHHccceecCCCCCHHHhcccceEEEEeCCCe
Confidence 9999999999999943 37778999999865
No 31
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=24.90 E-value=75 Score=27.10 Aligned_cols=93 Identities=16% Similarity=0.251 Sum_probs=48.5
Q ss_pred EEEeeCCeEEccCCccccccCceEEEEeeCCceeEEeeecCCCCCCcccccc---ccCcceeeeeeCCCeeEEEEeCCCC
Q 008793 45 LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEK---DRNLYTIRAVPFTEVRSIRRHTPAF 121 (553)
Q Consensus 45 llf~K~~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~---d~~~~~~~~v~ls~i~si~~~~p~~ 121 (553)
++|.-+-..|.| .+.++|.|.|.+. .|-++|+............ ..........|+++|..|+.|.--+
T Consensus 2 i~~s~~c~~I~~----~~~~~G~l~i~~~----~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll 73 (106)
T PF14844_consen 2 ILLSVPCELITP----LDSIPGTLIITKS----SIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL 73 (106)
T ss_dssp -SEEEEEEEEET----TEEEEEEEEE-SS----EEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT
T ss_pred EEEEEEEEEEEe----eeeEEEEEEEeCC----EEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC
Confidence 444445455555 3459999999855 4667777111110000000 0111123569999999999986544
Q ss_pred CceEEEEEeCCCCcCCceeeccCCH
Q 008793 122 GWQYIIVVLSSGLAFPPLYFYTGGV 146 (553)
Q Consensus 122 g~~~~il~~~dG~~~P~L~F~~GG~ 146 (553)
---=+.|...||.++= |-|.+.+.
T Consensus 74 r~~AlEiF~~dg~s~f-~~F~~~~~ 97 (106)
T PF14844_consen 74 RDTALEIFFSDGRSYF-FNFESKKE 97 (106)
T ss_dssp EEEEEEEEETTS-EEE-EE-SSHHH
T ss_pred cceEEEEEEcCCcEEE-EEcCCHHH
Confidence 4333688889998632 34444444
No 32
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=23.27 E-value=50 Score=21.27 Aligned_cols=15 Identities=47% Similarity=0.798 Sum_probs=10.9
Q ss_pred CcccccchhhHHHHH
Q 008793 462 LGYCQGMSDLLSPIL 476 (553)
Q Consensus 462 lGYvQGM~dL~a~LL 476 (553)
-||.||+.|.+--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 389999988765443
No 33
>PRK03636 hypothetical protein; Provisional
Probab=21.56 E-value=83 Score=30.10 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred eeEEEEeCCCCCceEEEEEeCCCCcCCceeeccCCHHHHHHHHHhcccccccCCCCceEEEeCC
Q 008793 111 VRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDF 174 (553)
Q Consensus 111 i~si~~~~p~~g~~~~il~~~dG~~~P~L~F~~GG~~~fl~~L~~~~~l~rS~~d~~~~lv~~~ 174 (553)
+..||+..-..+..++++++-.|..-+|+-|+.||. .+.++-+-|.++. -+-+.++|+.=.+
T Consensus 40 L~~VHFVe~~~~~~r~l~iS~~~~~~~pF~F~k~~~-~~~d~e~aFhdir-lN~~~~iYIql~F 101 (179)
T PRK03636 40 MEKVHFVENAEYCPRGLVMSAHGVDDVPFRFFKGNV-MTTDAEKSFHDIR-LNRDEDIYIQLNF 101 (179)
T ss_pred HhheeeeccccCCCceEEEEeeccCCCceEEEeCCc-eecCHHHHHHHHH-cCCCCCeEEEEec
Confidence 345777777788899999999999999999999998 7888888877776 3445668887443
No 34
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=21.07 E-value=5e+02 Score=21.76 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=47.7
Q ss_pred EEEEeeCCeEEccCCccc-cccCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCC
Q 008793 44 ELVYLKDNVTIHPTQFAS-ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (553)
Q Consensus 44 ~llf~K~~V~vhpt~~~~-~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g 122 (553)
.++|..++|-++-...+. ..-.|.|.|+- =-|-|++..+.. .. ..++||++|..+....-.++
T Consensus 15 ~~~~~q~~V~LYdG~~K~~~~q~G~l~LTs----HRliw~d~~~~~-----------~~-s~~l~L~~i~~~e~~~gf~~ 78 (89)
T PF11605_consen 15 TIVYQQDGVGLYDGDQKTPNFQNGRLYLTS----HRLIWVDDSDPS-----------KH-SIALPLSLISHIEYSAGFLK 78 (89)
T ss_dssp -EEEEEEEEEEEETTECSTT-SCEEEEEES----SEEEEEESSGHC-----------HH--EEEEGGGEEEEEEE-STTS
T ss_pred eEEEEecCeeeEcCCccCccccCCEEEEEe----eEEEEEcCCCCc-----------ee-EEEEEchHeEEEEEEccccC
Confidence 799999999998876554 55689999983 378898754332 11 36899999999977655442
Q ss_pred -ceEEEEEeC
Q 008793 123 -WQYIIVVLS 131 (553)
Q Consensus 123 -~~~~il~~~ 131 (553)
..=|+|.++
T Consensus 79 sSpKI~l~l~ 88 (89)
T PF11605_consen 79 SSPKIILHLK 88 (89)
T ss_dssp SS-EEEEEES
T ss_pred CCCeEEEEec
Confidence 223555543
Done!