Query 008793
Match_columns 553
No_of_seqs 350 out of 1527
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:50:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 4.6E-40 1.6E-44 349.3 16.2 210 331-552 8-245 (396)
2 2qfz_A TBC1 domain family memb 100.0 5E-40 1.7E-44 343.2 13.4 209 331-552 26-258 (345)
3 2qq8_A TBC1 domain family memb 100.0 3E-39 1E-43 335.9 13.9 218 331-552 21-242 (334)
4 3qye_A TBC1 domain family memb 100.0 6.1E-40 2.1E-44 340.7 5.3 206 328-552 27-237 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.8E-38 6E-43 326.8 9.5 195 331-552 5-203 (310)
6 4hl4_A TBC1 domain family memb 100.0 2E-34 6.7E-39 294.2 5.2 192 331-552 20-216 (292)
7 3qwl_A TBC1 domain family memb 100.0 7.1E-29 2.4E-33 252.4 9.3 188 332-552 27-216 (294)
8 2cay_A VPS36 PH domain, vacuol 96.1 0.013 4.4E-07 52.7 7.4 102 44-161 30-136 (145)
9 2hth_B Vacuolar protein sortin 95.0 0.19 6.5E-06 44.8 10.8 95 44-155 18-126 (140)
10 1pfj_A TFIIH basal transcripti 90.2 0.87 3E-05 38.5 7.4 63 65-145 21-83 (108)
11 2r2y_A Protein ADRM1; proteaso 41.7 1.2E+02 0.0042 26.9 8.9 56 60-126 42-98 (153)
12 2kr0_A Proteasomal ubiquitin r 34.2 2.3E+02 0.008 29.3 10.8 84 60-158 43-133 (411)
13 1y5o_A TFB1, RNA polymerase II 25.1 2.4E+02 0.0083 23.7 7.4 55 63-131 11-65 (115)
14 1zbp_A Hypothetical protein VP 24.6 46 0.0016 32.6 3.3 35 98-135 163-201 (273)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=4.6e-40 Score=349.27 Aligned_cols=210 Identities=25% Similarity=0.448 Sum_probs=184.9
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHH
Q 008793 331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 410 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~ 410 (553)
.++|.+++..+. .++.++||+++ ++|||+.+|+.||++|||++|.+.+.+ +.....++..|.+++++|.....
T Consensus 8 ~~kw~~lL~~~~-~~d~~~Lr~l~-~~GIP~~lR~~vW~~LLg~~~~~~~~~--~~~l~~~~~~Y~~l~~~~~~~~~--- 80 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQ--EGFLQRKRKEYRDSLKHTFSDQH--- 80 (396)
T ss_dssp HHHHHHHHSSCS-BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGGGH--HHHHHHHHHHHHHHHHHTSSSSC---
T ss_pred HHHHHHHHcCCC-CCCHHHHHHHH-HcCCCHHHHHHHHHHHHCCCCCChhHH--HHHHHHHHHHHHHHHHHHhhccC---
Confidence 489999998643 48999999988 689999999999999999999877544 45666788999999998764211
Q ss_pred hhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcC----------
Q 008793 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------- 480 (553)
Q Consensus 411 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~---------- 480 (553)
....+..++|++||.||+|++++|.. ..+++.|+|||.+|+.+||++|||||||+|+||||+++.
T Consensus 81 ---~~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~ 155 (396)
T 1fkm_A 81 ---SRDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155 (396)
T ss_dssp ---STHHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred ---cccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence 01223446899999999999999986 457899999999999999999999999999999998752
Q ss_pred --------C----------HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHH
Q 008793 481 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFR 542 (553)
Q Consensus 481 --------d----------E~~AFw~f~~Lm~~~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~r 542 (553)
+ |++|||||++||+++.++|..+++|+...+..++.||+..+|+||+||++.++.+.+|+++
T Consensus 156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 235 (396)
T 1fkm_A 156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR 235 (396)
T ss_dssp GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 1 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 008793 543 WVLIQFKRII 552 (553)
Q Consensus 543 W~ltlF~rEF 552 (553)
||++||+|||
T Consensus 236 W~l~LF~~~~ 245 (396)
T 1fkm_A 236 WMNCLLMREF 245 (396)
T ss_dssp HHHTTTGGGS
T ss_pred HHHHHHHhhC
Confidence 9999999997
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=5e-40 Score=343.24 Aligned_cols=209 Identities=22% Similarity=0.429 Sum_probs=180.9
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHH
Q 008793 331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 410 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~ 410 (553)
.++|.++++.+ .++.++||+++ ++|||+.+|+.||++|||++|.+.+. +......++..|..++++|......+
T Consensus 26 ~~kw~~~l~~~--~~d~~~Lr~l~-~~GiP~~~R~~vW~~llg~~p~~~~~--~~~~l~~~~~~Y~~l~~~~~~~~~~~- 99 (345)
T 2qfz_A 26 LDKFKQLLAGP--NTDLEELRRLS-WSGIPKPVRPMTWKLLSGYLPANVDR--RPATLQRKQKEYFAFIEHYYDSRNDE- 99 (345)
T ss_dssp HHHHHHHHHCS--BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHcCC--CCCHHHHHHHH-HCCCCHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHHHHHHHHHhhcCCCcc-
Confidence 58999999853 58999999998 69999999999999999999876544 35556678899999999886532211
Q ss_pred hhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcC----------
Q 008793 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------- 480 (553)
Q Consensus 411 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~---------- 480 (553)
...+..++|++||.||+|+ ++|..+ ..++.|+|||.+|+.+||++|||||||+||||||+++.
T Consensus 100 ----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~ 172 (345)
T 2qfz_A 100 ----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVD 172 (345)
T ss_dssp -----CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----
T ss_pred ----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhccccccc
Confidence 1223456999999999999 999863 46689999999999999999999999999999998873
Q ss_pred --------------CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHH
Q 008793 481 --------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLI 546 (553)
Q Consensus 481 --------------dE~~AFw~f~~Lm~~~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~lt 546 (553)
+|++|||||++||+++.++|..+++|+...+..++.||+..+|+||+||++.++.+.+||++||+|
T Consensus 173 ~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~ 252 (345)
T 2qfz_A 173 TVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNN 252 (345)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 289999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 008793 547 QFKRII 552 (553)
Q Consensus 547 lF~rEF 552 (553)
+|+|+|
T Consensus 253 lF~~~~ 258 (345)
T 2qfz_A 253 LLMREV 258 (345)
T ss_dssp TTTTTS
T ss_pred HHcccC
Confidence 999987
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=335.87 Aligned_cols=218 Identities=22% Similarity=0.343 Sum_probs=171.0
Q ss_pred HHHHH-HhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHH
Q 008793 331 SEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (553)
Q Consensus 331 ~~~W~-~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~ 409 (553)
..+|. .++..++...+.++||+++ ++|||+.+|+.||++|+|+.. ..+...+.......+..|..+...+.....+.
T Consensus 21 ~~~W~~~il~~w~~~~~~~~lr~l~-~~GIP~~lR~~vW~~llg~~~-~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 21 VLTWNNEILPNWETMWCSRKVRDLW-WQGIPPSVRGKVWSLAIGNEL-NITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHHTTGGGCC--CCCHHHHHHH-HTCCCHHHHHHHHHHHHCCTT-CCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhHHhccChHHHHHHH-HCCCCHHHHHHHHHHHhCCcc-ccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 58998 5888888888999999987 799999999999999999853 44444444444444555555443332111110
Q ss_pred H-hhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHH
Q 008793 410 A-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (553)
Q Consensus 410 ~-~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~ 488 (553)
. .......+...+|++||.||+|++++|.. .+++++.|+|||.+|+.+||++|||||||+|||+||+++ +|++||||
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~ 176 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIA 176 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHH
Confidence 0 00011133457999999999999999986 456789999999999999999999999999999999998 69999999
Q ss_pred HHHHHHHhc--cCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 489 FVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 489 f~~Lm~~~~--~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
|++||+++. .+|..+++++...+..++.||+..+|+||+||++.++.+.+|+++||+|+|+++|
T Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~l 242 (334)
T 2qq8_A 177 FSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSL 242 (334)
T ss_dssp HHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTS
T ss_pred HHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccC
Confidence 999999764 4577788999999999999999999999999999999999999999999999987
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=6.1e-40 Score=340.66 Aligned_cols=206 Identities=23% Similarity=0.399 Sum_probs=177.3
Q ss_pred CCcHHHHHHhhhcCCC---CCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhh
Q 008793 328 PLGSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQS 404 (553)
Q Consensus 328 ~lt~~~W~~~~~~~g~---~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~ 404 (553)
+.+.++|+++++.+|+ ..+.++||+++ ++|||+.+|+.||++|+|++++..+..++ ...++..|.++.+++.
T Consensus 27 ~e~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~- 101 (331)
T 3qye_A 27 KEVTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLT- 101 (331)
T ss_dssp HHHHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCC-
T ss_pred HHHHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcC-
Confidence 3356899999998887 35889999999 68999999999999999986532221111 1224567877665421
Q ss_pred CChHHHhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHH
Q 008793 405 ISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 484 (553)
Q Consensus 405 ~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~ 484 (553)
...++|++||+||+|++++|..+.+++++.|+|||.+|+.+||++|||||||+|||+||+++ +|++
T Consensus 102 -------------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~ 167 (331)
T 3qye_A 102 -------------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEE 167 (331)
T ss_dssp -------------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHH
T ss_pred -------------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHH
Confidence 12258999999999999999988888999999999999999999999999999999999999 6999
Q ss_pred HHHHHHHHHHHh--ccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 485 SFWCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 485 AFw~f~~Lm~~~--~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
|||||++||+++ ..+|.+++.|+...+..++.||+.++|+||+||++.++.+.+|+++||+|+|+++|
T Consensus 168 aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~l 237 (331)
T 3qye_A 168 AFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQF 237 (331)
T ss_dssp HHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTS
T ss_pred HHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhC
Confidence 999999999874 56788999999999999999999999999999999999999999999999999987
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=326.81 Aligned_cols=195 Identities=25% Similarity=0.415 Sum_probs=171.0
Q ss_pred HHHHHHhhhcCCCCC--ChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChH
Q 008793 331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~--~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 408 (553)
.++|.++++++++.. +.++||+++ ++|||+.+|+.||+.|+|+.+. ......|..+..+.
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l~-~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTLV-KSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHHH-HHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHH-HCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 378999999876654 678999998 7999999999999999999763 11345676654321
Q ss_pred HHhhhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHH
Q 008793 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (553)
Q Consensus 409 ~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~ 488 (553)
....++|++||.||+|++++|....+.+++.|+|||.+|+.+||++|||||||+|||+||+++ +|++||||
T Consensus 67 --------~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 67 --------SAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp --------CTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred --------CCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 112358999999999999999988778999999999999999999999999999999999999 69999999
Q ss_pred HHHHHHH--hccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 489 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 489 f~~Lm~~--~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
|++||++ +..+|..+++|+...+.+++.||+..+|+||+||++.++.+.+|+++||+|+|+++|
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~l 203 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKF 203 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTS
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccC
Confidence 9999987 566788888999999999999999999999999999999999999999999999987
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2e-34 Score=294.22 Aligned_cols=192 Identities=21% Similarity=0.264 Sum_probs=156.7
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHcC-C-CChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChH
Q 008793 331 SEEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~Lr~~i~~~-G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 408 (553)
.++++..+. ...+|+++||+++..+ | +|+++|+.||+.|+|+.+...... |.....
T Consensus 20 ~~~i~~~l~--~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~~-------- 77 (292)
T 4hl4_A 20 VAEIHQALN--SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNLR-------- 77 (292)
T ss_dssp HHHHHHHHT--SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTHH--------
T ss_pred HHHHHHHHc--CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhhc--------
Confidence 356667774 4568999999998643 3 799999999999999987653221 110000
Q ss_pred HHhhhhhhhhhccccccccccCCCCCCCCCCC--CCchhhhHhhhhhhheeecCCCcccccchhhHHHHHHhcCCHHHHH
Q 008793 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 486 (553)
Q Consensus 409 ~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~--~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AF 486 (553)
...+..++|++||.||+|+++.|..+ ....++.|+|||.+|+.+||++|||||||+|||+||+++ +|++||
T Consensus 78 ------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF 150 (292)
T 4hl4_A 78 ------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLAT 150 (292)
T ss_dssp ------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHH
T ss_pred ------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHH
Confidence 01223458999999999999888642 245678999999999999999999999999999999999 699999
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 487 WCFVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 487 w~f~~Lm~~~~~-~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
|||++||++..+ .|.+++.++...+..++.+|+..+|+||+||++.++. .+||++||+|+|+++|
T Consensus 151 ~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l 216 (292)
T 4hl4_A 151 SLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVL 216 (292)
T ss_dssp HHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTS
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhc
Confidence 999999997655 4667888999999999999999999999999999995 6999999999999986
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.95 E-value=7.1e-29 Score=252.43 Aligned_cols=188 Identities=12% Similarity=0.173 Sum_probs=147.2
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHcCCCChhhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHHhhCChHHHh
Q 008793 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 411 (553)
Q Consensus 332 ~~W~~~~~~~g~~~~~~~Lr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 411 (553)
+..+.++. +.++|.++||+++++||||+.+|+.||++|+|++|.+++. |+.+...++++|++++++...
T Consensus 27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~~------- 95 (294)
T 3qwl_A 27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALKV------- 95 (294)
T ss_dssp HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhhh-------
Confidence 45666664 6789999999999777799999999999999999998776 467788899999999887322
Q ss_pred hhhhhhhhccccccccccCCCCCCCCCCCCCchhhhHhh--hhhhheeecCCCcccccchhhHHHHHHhcCCHHHHHHHH
Q 008793 412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRD--ILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 489 (553)
Q Consensus 412 ~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~--IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f 489 (553)
.++|+.+.++. ..|.. .. .+.+ ...+|.. +++. ++|||++|++++++++.+|++|||||
T Consensus 96 --------~r~I~~~tP~~----~vfl~---~~--~~~~~~l~~~~~~-~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f 156 (294)
T 3qwl_A 96 --------VRFVSDATPQA----EVYLR---MY--QLESGKLPRSPSF-PLEP-DDEVFLAIAKAMEEMVEDSVDCYWIT 156 (294)
T ss_dssp --------TTSCCTTSCHH----HHHHH---HH--HHHHTCCCSSTTS-CCCH-HHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred --------hhhhhccCchH----HHHHH---HH--HcccccccccccC-Cccc-chhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 23566533221 01110 00 0111 2223321 3443 55999999999999999999999999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHHHHhhc
Q 008793 490 VALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRII 552 (553)
Q Consensus 490 ~~Lm~~~~~~F~~~~~g~~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rW~ltlF~rEF 552 (553)
++||+++.++|..+++|+...+ +.||+.++|+|++||++.++.+.+++.+||+++|+|+|
T Consensus 157 ~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~ 216 (294)
T 3qwl_A 157 RRFVNQLNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCL 216 (294)
T ss_dssp HHHHHHHHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTS
T ss_pred HHHHHHHHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCC
Confidence 9999999999999999998764 89999999999999999999887777799999999997
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=96.08 E-value=0.013 Score=52.75 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=76.1
Q ss_pred EEEEeeCCeEEccCCcc-ccccCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCC
Q 008793 44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (553)
Q Consensus 44 ~llf~K~~V~vhpt~~~-~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g 122 (553)
.+||..++|-++....+ ...-.|.|.|+ .--|-|+|... .. -..|++||..|..+...+|.+|
T Consensus 30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLT----shRIIyv~~~~-----------~~-~~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 30 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAK-----------PT-QNSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSC-----------HH-HHCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEcCCcceecCCCCCcCCCccEEEEE----cCeEEEecCCC-----------Cc-ceEEEeEhHheeeeeEEcCccc
Confidence 68888899999887644 35667878776 34678987432 11 1248999999999999999888
Q ss_pred ceE-EEEEeC---CCCcCCceeeccCCHHHHHHHHHhcccccc
Q 008793 123 WQY-IIVVLS---SGLAFPPLYFYTGGVREFLATIKQHVLLVR 161 (553)
Q Consensus 123 ~~~-~il~~~---dG~~~P~L~F~~GG~~~fl~~L~~~~~l~r 161 (553)
+.. |++.++ .|...--|-|..||..+|.+.|.+-+.-.+
T Consensus 94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~ 136 (145)
T 2cay_A 94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALENIL 136 (145)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHHHHHH
Confidence 654 666775 456688899999999999999887544433
No 9
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=94.97 E-value=0.19 Score=44.76 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=72.3
Q ss_pred EEEEeeCCeEEccCCccccccCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCc
Q 008793 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (553)
Q Consensus 44 ~llf~K~~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~ 123 (553)
.+|+..++|-++....+...-.|.|.|+ .--|-|+.... +. ..+++||+.|.++...+|.+|-
T Consensus 18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~-----------~~--~s~~lpl~~v~~~e~~~~~f~~ 80 (140)
T 2hth_B 18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN-----------HE--CCMAILLSQIVFIEEQAAGIGK 80 (140)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC-----------CS--CCEEEEGGGEEEEEEECCTTSS
T ss_pred eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC-----------Cc--eEEEEEhHHeeeeeeecccccc
Confidence 6888889999988765556678888887 44688876432 11 2379999999999999997764
Q ss_pred -eEEEEEeCC-------------CCcCCceeeccCCHHHHHHHHHh
Q 008793 124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQ 155 (553)
Q Consensus 124 -~~~il~~~d-------------G~~~P~L~F~~GG~~~fl~~L~~ 155 (553)
.-|++.++. |...--|-|+.||..+|...|..
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~ 126 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE 126 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHH
Confidence 357777764 33455799999999999999977
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=90.16 E-value=0.87 Score=38.49 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=48.7
Q ss_pred CceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceeeccC
Q 008793 65 SGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTG 144 (553)
Q Consensus 65 ~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~dG~~~P~L~F~~G 144 (553)
.|.|.|... .|+|+|+.. +. ...++++++|...+..||+..-=-+-|++++|.++ .|+|-++
T Consensus 21 dGtL~l~~d----~i~W~p~~~-~~------------~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~ 82 (108)
T 1pfj_A 21 DGALYLMAE----RIAWAPEGK-DR------------FTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNE 82 (108)
T ss_dssp BCEEEEETT----EEEEECSSS-SS------------CSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCS
T ss_pred CceEEEEcc----eEEEccCCC-CC------------ceEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCc
Confidence 399999866 899999544 21 11356899999999999976655678889998776 8899887
Q ss_pred C
Q 008793 145 G 145 (553)
Q Consensus 145 G 145 (553)
+
T Consensus 83 ~ 83 (108)
T 1pfj_A 83 S 83 (108)
T ss_dssp S
T ss_pred H
Confidence 5
No 11
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=41.70 E-value=1.2e+02 Score=26.89 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=34.4
Q ss_pred cccccCceEEEEee-CCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEE
Q 008793 60 ASERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYI 126 (553)
Q Consensus 60 ~~~~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~ 126 (553)
.-|.-+|+|.|.+. ++-+-+.|.|-+.... +- .+-|.=.|..-.++.+.+.|.=|+
T Consensus 42 ~Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~v-------Ed----DlIi~P~d~~F~kV~~c~tGRVyv 98 (153)
T 2r2y_A 42 TPDKRKGLVYIQQTDDSLIHFCWKDRTSGTV-------ED----DLIIFPDDCEFKRVPQCPSGRVYV 98 (153)
T ss_dssp EECCSCEEEEEEECTTSCEEEEEEETTTCCE-------EE----EEECCTTSEEEEECTTCTTSCEEE
T ss_pred eECCCCEEEEEEECCCCcEEEEEecCCCCCc-------cc----eEEEcCCCeEEEECCCCCCCeEEE
Confidence 33557999999984 5678899999643210 10 122323566666666667776665
No 12
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=34.22 E-value=2.3e+02 Score=29.26 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=49.5
Q ss_pred cccccCceEEEEe-eCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCc
Q 008793 60 ASERISGRLKLIK-QGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPP 138 (553)
Q Consensus 60 ~~~~I~G~L~l~~-~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~dG~~~P~ 138 (553)
.-|.-+|+|.|.+ .++-+.++|.|-.... .+- .+-|-=.|..-.++.+.+.|.=|+ |.-+++. .
T Consensus 43 ~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~-------~Ed----dlii~P~d~~f~~V~~c~tGRVyv-LkF~ss~---~ 107 (411)
T 2kr0_A 43 TPDKRKGLVYIQQTDDSLIHFCWKDRTSGN-------VED----DLIIFPDDCEFKRVPQCPSGRVYV-LKFKAGS---K 107 (411)
T ss_dssp EECCSCEEEEEEECTTSCEEEEEEESSSCC-------EEE----EEEECTTSEEEEECTTCSSSCEEE-EEETTTC---C
T ss_pred eecCCCcEEEEEeCCCCcEEEEEecCCCCC-------ccc----ceEEcCCceEEEECCCCCCCeEEE-EEecCCC---c
Confidence 3356899999998 4567889999954221 011 122323677666776667786665 3334422 2
Q ss_pred eeeccC------CHHHHHHHHHhccc
Q 008793 139 LYFYTG------GVREFLATIKQHVL 158 (553)
Q Consensus 139 L~F~~G------G~~~fl~~L~~~~~ 158 (553)
-||+|= .-+++.+.+..++.
T Consensus 108 r~fFWmQe~~~~~D~~~~~~vN~ll~ 133 (411)
T 2kr0_A 108 RLFFWMQEPKTDQDEEHCRKVNEYLN 133 (411)
T ss_dssp EEEEEECCSCGGGHHHHHHHHHHHHH
T ss_pred eeEEEecCCCcccHHHHHHHHHHHHh
Confidence 355442 22577777777665
No 13
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=25.14 E-value=2.4e+02 Score=23.74 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=40.4
Q ss_pred ccCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeC
Q 008793 63 RISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (553)
Q Consensus 63 ~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~ 131 (553)
-..|.|.|.+...=..|.|+|-.+ + . ..+|+|+.|..++--+.+..-=-+-|+.+
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g-~---------~----~isI~l~~It~LQqTp~ts~KvmLKI~~k 65 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDG-D---------K----VHTVVLSTIDKLQATPASSEKMMLRLIGK 65 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSS-S---------C----EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred ecccEEEEccCCCcceEEEEECCC-C---------c----cEEEEhhhhhhhhcCCCCCCceEEEEEEe
Confidence 478999999888888999999544 1 1 26899999999877666555444555555
No 14
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=24.63 E-value=46 Score=32.59 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=28.6
Q ss_pred cCcceeeeeeCCCeeEEEEeCCCC----CceEEEEEeCCCCc
Q 008793 98 RNLYTIRAVPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA 135 (553)
Q Consensus 98 ~~~~~~~~v~ls~i~si~~~~p~~----g~~~~il~~~dG~~ 135 (553)
..-|| ||+++|.+|++.+|.. =|.-..|.+.||..
T Consensus 163 G~Y~W---lPf~~I~~l~~~~P~~l~DlvWrpa~l~l~dG~~ 201 (273)
T 1zbp_A 163 GNYFL---VPIASINTLEIKSATSLLESVWRPVEFDIDGLGE 201 (273)
T ss_dssp SCEEE---EEGGGEEEEEECCCCSSGGGTEEEEEEEETTTEE
T ss_pred CeEEE---eeHHHhhcccccCCCcHHHhhccccEEEEecCCe
Confidence 34456 9999999999999954 37778999999886
Done!