Query 008794
Match_columns 553
No_of_seqs 219 out of 695
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 16:39:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2573 Ribosome biogenesis pr 100.0 3E-151 7E-156 1162.8 35.6 435 1-438 1-437 (498)
2 KOG2572 Ribosome biogenesis pr 100.0 5E-126 1E-130 976.3 33.5 402 3-417 1-402 (498)
3 PRK14552 C/D box methylation g 100.0 2.8E-98 6E-103 794.2 34.5 370 3-412 1-376 (414)
4 COG1498 SIK1 Protein implicate 100.0 1.2E-97 3E-102 775.5 32.1 357 46-416 2-358 (395)
5 KOG2574 mRNA splicing factor P 100.0 9.9E-59 2.2E-63 481.0 12.7 250 165-416 91-340 (492)
6 PF01798 Nop: Putative snoRNA 100.0 8.9E-55 1.9E-59 406.3 10.0 148 266-413 1-149 (150)
7 PF08060 NOSIC: NOSIC (NUC001) 99.9 5.3E-22 1.2E-26 155.7 6.5 53 170-222 1-53 (53)
8 PF08156 NOP5NT: NOP5NT (NUC12 99.8 4.1E-20 8.9E-25 151.6 4.7 66 3-69 1-67 (67)
9 KOG2573 Ribosome biogenesis pr 59.1 3.7 8E-05 45.0 0.6 15 112-126 62-76 (498)
10 KOG2014 SMT3/SUMO-activating c 55.1 24 0.00051 37.7 5.6 70 245-315 230-303 (331)
11 KOG2572 Ribosome biogenesis pr 43.3 15 0.00032 40.5 2.0 31 282-312 203-233 (498)
12 TIGR03060 PS_II_psb29 photosys 42.6 3.9E+02 0.0084 27.3 12.0 102 97-202 6-108 (214)
13 PF04286 DUF445: Protein of un 35.9 5.1E+02 0.011 26.8 12.8 45 267-311 278-322 (367)
14 KOG1144 Translation initiation 32.2 26 0.00056 41.6 1.8 8 458-465 104-111 (1064)
15 KOG3365 NADH:ubiquinone oxidor 27.9 33 0.00071 32.7 1.4 37 185-222 46-82 (145)
16 PRK13266 Thf1-like protein; Re 26.3 7.3E+02 0.016 25.5 12.3 102 97-202 6-108 (225)
17 KOG1144 Translation initiation 23.9 46 0.001 39.7 2.0 6 483-488 91-96 (1064)
18 cd03569 VHS_Hrs_Vps27p VHS dom 22.5 3.5E+02 0.0075 25.4 7.2 93 259-375 17-109 (142)
19 KOG0964 Structural maintenance 22.2 1.4E+03 0.03 28.8 13.3 165 4-195 539-725 (1200)
20 PLN00047 photosystem II biogen 22.2 9.7E+02 0.021 25.5 12.2 102 97-202 57-159 (283)
21 TIGR03738 PRTRC_C PRTRC system 21.8 52 0.0011 27.6 1.4 17 190-206 26-42 (66)
22 PF11043 DUF2856: Protein of u 21.2 2.9E+02 0.0063 24.3 5.7 27 113-141 12-38 (97)
23 PF07913 DUF1678: Protein of u 20.3 1.5E+02 0.0033 29.3 4.3 72 123-199 95-170 (201)
24 PLN02967 kinase 20.2 60 0.0013 37.5 1.9 20 469-488 95-114 (581)
25 cd08801 Death_UNC5D Death doma 20.1 2.1E+02 0.0047 25.7 4.9 65 364-437 15-79 (98)
No 1
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-151 Score=1162.82 Aligned_cols=435 Identities=69% Similarity=1.071 Sum_probs=425.1
Q ss_pred CccEEEecCcceeeeeeeccccccccchHHHHHHhhcHHhhcccEEeeeeccCCCHHHHHHHhhhhhccCCCHHHHHHHH
Q 008794 1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLE 80 (553)
Q Consensus 1 m~~~vLfEtaaGYaLFkv~~~dei~~~~~~v~~~~~d~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~ 80 (553)
|++|||||+|+||+||.+++.|+|+..+++|+.++.|+.+|+++|+|.+|.||+++.+||||+|+||+|.+|++|++||+
T Consensus 1 ~~~~ll~E~a~GY~lf~~~~~dei~~~~~~v~~s~~D~~kf~~vv~l~sf~pFk~a~~ALen~n~iSeG~~~edLr~fLe 80 (498)
T KOG2573|consen 1 MMEYLLFESATGYGLFKVKEQDEIGLHLKEVRSSVDDLSKFTQVVQLASFAPFKGAADALENANAISEGVVHEDLRSFLE 80 (498)
T ss_pred CcceEEEeccCceeEEEEechhHhhhhhHHHHHHHHhHHHHHhHhhhhccCCcccHHHHHHhccccccccccHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcccccccCCceEEEecChhhhhhhhhhcc-cccccChHHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHh
Q 008794 81 LNLPKVKEGKKAKFSLGVSEPKIGSHIFEETK-IPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAK 159 (553)
Q Consensus 81 ~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lg-i~c~~~~~v~EllRgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~K 159 (553)
.|+|++ |+++.+|||+|++||.+|++.++ |+|++++.|+|||||+|.||++|+++|++.|+.+|||||||+|||+|
T Consensus 81 ~nlpK~---kkkk~sLgi~d~kLg~~i~E~~~~i~c~~~~~~~ellRGvR~hf~kl~K~L~~~d~~kaqLGLghsYSRaK 157 (498)
T KOG2573|consen 81 LNLPKV---KKKKVSLGIGDSKLGISIKEAFPKIPCQSNEVVQELLRGVRKHFDKLMKGLDPGDLEKAQLGLGHSYSRAK 157 (498)
T ss_pred hhChhh---hcCceeeccCcchhhhHHHhhccCcccccchhHHHHHHHHHHHHHHHHccCCCccHHHHHhcccchhhhhh
Confidence 999974 56679999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhhhhhhcC
Q 008794 160 VKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILG 239 (553)
Q Consensus 160 vk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~~il~ 239 (553)
|+||++|+|+||||+|.||||||+|||+|+||||||||||||||.+||+||+.|+++|++|+++..++++.+.++.+.|+
T Consensus 158 VkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFPEL~kiv~DNy~ya~~~~~i~dk~~l~ed~~~~~~e~l~ 237 (498)
T KOG2573|consen 158 VKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFPELVKIVPDNYKYAKVVKFIVDKEKLNEDGLHELLEDLG 237 (498)
T ss_pred eeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccHHHHHhccchHHHHHHHHHHhchhhccccchhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred -ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCc
Q 008794 240 -DEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSL 318 (553)
Q Consensus 240 -~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL 318 (553)
+.+.+++|++|+++|||++||+.||.||..||++|.+|.+||++|.+||.++|+.|||||++|||+.||||||||||||
T Consensus 238 ~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsL 317 (498)
T KOG2573|consen 238 VDSEKAQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEYRKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSL 317 (498)
T ss_pred CcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhcccc
Confidence 6677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCchHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHH
Q 008794 319 TNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGE 398 (553)
Q Consensus 319 ~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~G~ 398 (553)
+||||+||||+|||||||||||+|+|++||||||+||||+||++|..+++|||+||||||||||+|||||++.|++.||+
T Consensus 318 tNLaK~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfigrA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe 397 (498)
T KOG2573|consen 318 TNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGE 397 (498)
T ss_pred chhhhCcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchhhhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHhhcchhhh
Q 008794 399 KLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 438 (553)
Q Consensus 399 ~lr~~ie~rl~~l~~~~~p~kn~~~m~~~~~~~~~~~~~~ 438 (553)
.||+|||+||++|++|.+|++|++||++|++.+.+++.+.
T Consensus 398 ~Lr~qVEeRL~fy~tg~~p~kn~~vmkea~e~~~~~~~~~ 437 (498)
T KOG2573|consen 398 KLREQVEERLEFYETGEAPRKNSDVMKEAMEAYNGISRDS 437 (498)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999988766655
No 2
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-126 Score=976.26 Aligned_cols=402 Identities=46% Similarity=0.770 Sum_probs=385.2
Q ss_pred cEEEecCcceeeeeeeccccccccchHHHHHHhhcHHhhcccEEeeeeccCCCHHHHHHHhhhhhccCCCHHHHHHHHhh
Q 008794 3 LYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELN 82 (553)
Q Consensus 3 ~~vLfEtaaGYaLFkv~~~dei~~~~~~v~~~~~d~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~~n 82 (553)
||||||||+|||||++.+...+ .+.+++|+.|.+++...++|+|++|..|.++.+||++.+.|.+|.+|..|++||+.+
T Consensus 1 mlvL~Eta~Gya~fk~~de~kl-~~v~~l~~ef~s~e~a~~~~kl~~f~kf~~ta~alea~~~l~eGkvs~~L~k~lk~~ 79 (498)
T KOG2572|consen 1 MLVLFETAAGYALFKVLDEKKL-ANVDDLWKEFSSAEKALKMVKLVAFEKFDSTAEALEAVTALAEGKVSSGLEKFLKLN 79 (498)
T ss_pred CeEEEeeccceeeeeecchhhH-hhHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhHHHHHHhh
Confidence 6999999999999999853333 578999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccccCCceEEEecChhhhhhhhhhcccccccChHHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhc
Q 008794 83 LPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKF 162 (553)
Q Consensus 83 lpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~Kvk~ 162 (553)
.. +++|+|+|++||..|++.+++.|++++.|.+++||||.|++.|++++.+.|+..|.|||+|+++|+||+|
T Consensus 80 ~~--------~etLaVaD~KLgn~i~ekL~~~~v~~~~v~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkf 151 (498)
T KOG2572|consen 80 KK--------KETLAVADAKLGNAIKEKLSINCVHDSAVMELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKF 151 (498)
T ss_pred cc--------CCeeeeccHHHhHHHHHhhcceeecchhHHHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhccc
Confidence 42 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhhhhhhcCChH
Q 008794 163 NVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDED 242 (553)
Q Consensus 163 ~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~~il~~~~ 242 (553)
+|+++|+||||||+|||+||+++|+|+||||||||||||||.+||.||+.|+++|+.+|+|.++...+++ +|++ ++
T Consensus 152 s~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~mG~r~~~a~~d~s---Eil~-ee 227 (498)
T KOG2572|consen 152 SPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKAMGVRCNAASLDFS---EILP-EE 227 (498)
T ss_pred CcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHhHhhhhhcccHH---hhch-HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877654 5665 45
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhc
Q 008794 243 KAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLA 322 (553)
Q Consensus 243 ~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~LA 322 (553)
....+..+|.+|||+++|+.|+.+|..+|++|+++.+||.+|.+||.+||..||||||+|||++||||||+|||||.|||
T Consensus 228 iE~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLa 307 (498)
T KOG2572|consen 228 IEAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLA 307 (498)
T ss_pred HHHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHH
Q 008794 323 KCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLRE 402 (553)
Q Consensus 323 k~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~G~~lr~ 402 (553)
|+|+||||||||||||||||+|+++|||||+|||+++|+++||+++|||+|.||+|++||+|+|+|+++.+|.+|...|.
T Consensus 308 K~p~StIQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~ 387 (498)
T KOG2572|consen 308 KAPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRA 387 (498)
T ss_pred hCChhHHHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCC
Q 008794 403 QVEERLDFYDKGVAP 417 (553)
Q Consensus 403 ~ie~rl~~l~~~~~p 417 (553)
++|.||+.|+.+...
T Consensus 388 klE~rlr~lE~r~l~ 402 (498)
T KOG2572|consen 388 KLEKRLRSLEGRDLQ 402 (498)
T ss_pred HHHHHHhhhhccCcc
Confidence 999999999976544
No 3
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=2.8e-98 Score=794.23 Aligned_cols=370 Identities=34% Similarity=0.494 Sum_probs=340.9
Q ss_pred cEEEecCcceeeeeeeccccccccchHHHHHHhhcHHhhcccEEeeee-ccCCCHHHHHHHhhhhhccCCCHHHHHHHHh
Q 008794 3 LYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAF-HPFESALDALNQCNSVSEGLMTNELRNFLEL 81 (553)
Q Consensus 3 ~~vLfEtaaGYaLFkv~~~dei~~~~~~v~~~~~d~~~f~k~VkL~aF-~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~~ 81 (553)
+.+|+|||.||.+|.-.+ ++ .++ +-|.+.++|+++++++++|++++.|++||+.
T Consensus 1 ~~~~~~~~~g~~~~~~~~--~~-----------------------~~~~~~~~~~~~a~~~~~~~~~g~~~~~l~~~l~~ 55 (414)
T PRK14552 1 KIYIAEHVIGAFAFDENG--KL-----------------------IDKIFNPEDIPKIVEELLNNEKGEPTNALFELLEE 55 (414)
T ss_pred CeeeeeccceeeEEccCc--ch-----------------------hhhhcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 478999999999997632 11 112 2455999999999999999999999999988
Q ss_pred hCcccccccCCceEEEecChhhhhhhhhhcccccccChHHHHHHHHHhhhhhhhhccC----CcccHHHHHhhhhHHHHH
Q 008794 82 NLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDL----KPGDLEKAQLGLGHSYSR 157 (553)
Q Consensus 82 nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~~ll~~l----~~~d~~k~~lgLaHs~sR 157 (553)
+++ +.+.+|+|+|++|+..|++ +|+.|+.+ .+.+++||||.|+.+++.++ .+.|+.++++|++|+|||
T Consensus 56 -~~~-----~~~~~l~v~d~~l~~~l~~-~~~~~~~~-~~~~~~r~iR~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~sr 127 (414)
T PRK14552 56 -LKE-----LGPDEVVVENEEESRKLQE-LGYRVTVE-PPNKIGEFLRENLPELGVEYGFFEDEEEFYEKLHEWSVELTR 127 (414)
T ss_pred -chh-----cCCceEEEecHHHHHHHHH-cCCeeEec-cHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHhHHHHH
Confidence 452 2357899999999999998 78999854 66899999999999999754 478999999999999999
Q ss_pred HhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhhhhhh
Q 008794 158 AKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDI 237 (553)
Q Consensus 158 ~Kvk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~~i 237 (553)
.+|+|++++.|+||||||.++|+||++||.||||||+||+||||||++||+|+.+|+++|+.++++.++....+. ++
T Consensus 128 ~klk~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~~~FPEL~~iv~d~~~Y~~iV~~i~~~~~i~~~~l~---~i 204 (414)
T PRK14552 128 RKLRSAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYVKLVSELGDRENYTREKLK---KL 204 (414)
T ss_pred HHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHhhcCChHHHHHHHHHcCChhhhhhhHHH---hc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998764443 34
Q ss_pred -cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhc
Q 008794 238 -LGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAG 316 (553)
Q Consensus 238 -l~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AG 316 (553)
++ ++.++.|..||++|||.++++.|+.+|..+|++|++|+++|+.|.+||+++|..||||||+|||+.+|||||+|||
T Consensus 205 ~l~-~eka~~I~~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~iAPNLtaLVG~~lAArLIa~AG 283 (414)
T PRK14552 205 GLP-ENKARKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEVAPNLTALVGPSLGARLISLAG 283 (414)
T ss_pred cCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhhHHHHHHHHHhC
Confidence 44 5678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccCCchHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchH
Q 008794 317 SLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIF 396 (553)
Q Consensus 317 sL~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~ 396 (553)
||.+||+||||||||||||||||+||+|+++||||||||||++|+++|+|+||||+|+||+|||||||||||++. .+
T Consensus 284 sL~~Lak~PastIqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgkiaR~lA~K~alAARiD~~~~~---~~ 360 (414)
T PRK14552 284 GLEELAKMPASTIQVLGAEKALFRHLRTGAKPPKHGVIFQYPAIHGSPWWQRGKIARALAAKLAIAARVDYFSGR---YI 360 (414)
T ss_pred CHHHHhhCCchHHHHhchhhHHHHHhccCCCCCCceEEEcCHHHhhCCHHHHHHHHHHHHHHHHHHHHhhhcCCc---cc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999873 69
Q ss_pred HHHHHHHHHHHHHhhh
Q 008794 397 GEKLREQVEERLDFYD 412 (553)
Q Consensus 397 G~~lr~~ie~rl~~l~ 412 (553)
|.+||++|++||+++.
T Consensus 361 G~~l~~~l~~ri~~i~ 376 (414)
T PRK14552 361 GDELKEELNKRIEEIK 376 (414)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 4
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-97 Score=775.50 Aligned_cols=357 Identities=43% Similarity=0.654 Sum_probs=337.2
Q ss_pred EeeeeccCCCHHHHHHHhhhhhccCCCHHHHHHHHhhCcccccccCCceEEEecChhhhhhhhhhcccccccChHHHHHH
Q 008794 46 QLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELL 125 (553)
Q Consensus 46 kL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~~~v~Ell 125 (553)
+|++|.||++..+++++-+.+.+|.++..+..||..+++.. ....++.++|++|+. .....|..++....+.
T Consensus 2 ~l~~~~~f~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~----~~~~e~~~~~~~l~~----~~~~~~~~~~~~~~~r 73 (395)
T COG1498 2 SLVDFEPFPSDADALEEELLISEGGVSSALEVNLELELIEG----EKKLELVVCDTKLGN----ADSAFEIPSEVGEDLR 73 (395)
T ss_pred CccccccCCccHHHHhhhhhhhhcccchHHHHHHHhhcccc----hheeeccchhhhhhc----ccccccCCcHHHHHHH
Confidence 68899999999999999999999999999999999998742 346889999999998 1125566778888888
Q ss_pred HHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhh
Q 008794 126 RGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVK 205 (553)
Q Consensus 126 RgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~Kvk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~ 205 (553)
++++.++.++.... ++|+..+.++++|+|||.+|++++++.|+||||||++||+||++||+|+||||||||||||||++
T Consensus 74 ~~~~~~~~~l~~~~-~~d~~~~~~~~~~~~sr~kv~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPEL~~ 152 (395)
T COG1498 74 ENAEEALGELSSSD-EDDYYRMLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSS 152 (395)
T ss_pred HHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhh
Confidence 99999999997655 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHhHHHHHHHhhcCCCCCCCChhhhhhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008794 206 IVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLY 285 (553)
Q Consensus 206 iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~ 285 (553)
||+||.+||++|..+|++.+++++.+..|..++++ .+..|..+|..|||.++++.|+.+|..||+.|.+|+++|++|.
T Consensus 153 lv~~~~~Y~~~V~~~g~~~~~~~~~~~~l~~~~~~--~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~ 230 (395)
T COG1498 153 LVPDNEQYAKLVSALGNRENINKESLKDLGFALPD--IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLE 230 (395)
T ss_pred hcccHHHHHHHHHHHcchhccchhhHHHHhhhcch--HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887764 7889999999999999999999999999999999999999999
Q ss_pred HHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCcc
Q 008794 286 EYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASA 365 (553)
Q Consensus 286 ~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~ 365 (553)
+||+++|+.||||||+||||.||||||+|||||.+||+|||||||+|||||||||||+++++|||||+|||||+|+++|+
T Consensus 231 ~Yi~~~M~~vAPNlt~LVG~~lgARLIs~AGgL~~LAk~PASTIQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~sp~ 310 (395)
T COG1498 231 EYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKSPP 310 (395)
T ss_pred HHHHHHHHHhCccHHHHHhHHHHHHHHHHhcCHHHHHhCccchhhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHhhhcCCC
Q 008794 366 RNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVA 416 (553)
Q Consensus 366 ~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~G~~lr~~ie~rl~~l~~~~~ 416 (553)
|+||||||+||+|||||||||+|++++++ ..||++|++||+++.++.+
T Consensus 311 ~~rGkiAR~LAaK~AIAARiD~~s~~~~~---~~lr~ele~Ri~~i~~~~~ 358 (395)
T COG1498 311 WQRGKIARALAAKLAIAARIDAFSGEPDG---ISLREELEKRIEKLKEKPP 358 (395)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999877 8899999999999997643
No 5
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=9.9e-59 Score=481.05 Aligned_cols=250 Identities=24% Similarity=0.425 Sum_probs=233.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhhhhhhcCChHHH
Q 008794 165 NRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKA 244 (553)
Q Consensus 165 ~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~~il~~~~~~ 244 (553)
+..+.+|+.++.+.-+||++|+.+|.+||+||+.+||||+++|+++++|+++|+.|||..+....+++ +..+|+. ..+
T Consensus 91 dpeykLIVd~n~iavdI~nEI~ivH~FikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~-~~~~L~~-atI 168 (492)
T KOG2574|consen 91 DPEYKLIVDCNQIAVDIENEIVIVHNFIKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLE-LQAILPS-ATI 168 (492)
T ss_pred CcceeeeechhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhh-hhccCcc-ceE
Confidence 35678999999999999999999999999999999999999999999999999999998776444432 3346653 445
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccC
Q 008794 245 KEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKC 324 (553)
Q Consensus 245 ~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~LAk~ 324 (553)
+.|...|++|.|..++++.+.+|.++|+.+++|...|..|.+||++||..||||||+|||+.+||+||++||||.+|++|
T Consensus 169 MVvsvTasTT~G~~Lp~d~~~~v~eAc~~a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~ 248 (492)
T KOG2574|consen 169 MVVSVTASTTQGNKLPEDELEQVLEACEMAEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKM 248 (492)
T ss_pred EEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccC
Confidence 66678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHH
Q 008794 325 PSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQV 404 (553)
Q Consensus 325 PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~G~~lr~~i 404 (553)
||||||+||+.|.+..++++-...|+|||||+|++||..||.+|.|++|+||+||+||||||+++++++|.+|..||++|
T Consensus 249 PaCNv~vlGk~kk~l~gfst~~~~~~~Gyly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~ev 328 (492)
T KOG2574|consen 249 PACNVQVLGKQKKTLIGFSTTSSLPHTGYLYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEV 328 (492)
T ss_pred CcchhhhhhccchhccccccccccCccceeeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCC
Q 008794 405 EERLDFYDKGVA 416 (553)
Q Consensus 405 e~rl~~l~~~~~ 416 (553)
+.++++|.+.++
T Consensus 329 ekK~eKl~EpPp 340 (492)
T KOG2574|consen 329 EKKIEKLQEPPP 340 (492)
T ss_pred HHHHHhhcCCCC
Confidence 999999998544
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=8.9e-55 Score=406.28 Aligned_cols=148 Identities=51% Similarity=0.883 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhhhHHhhhc
Q 008794 266 NVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTR 345 (553)
Q Consensus 266 ~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~LAk~PAStIQiLGAEKALFraLkt~ 345 (553)
||.++|++|++|+++|+.|.+||++||..||||||+|||+.||||||++||||.+||+|||||||+|||||++|++|+++
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL~~Lak~Pasniq~lGaeK~~~~~l~~~ 80 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGLENLAKMPASNIQVLGAEKALFRGLKTK 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS-HHHHTTSTCHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccHHHHHhCCHhhHHHHHhHHHHhHHhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCch-HHHHHHHHHHHHHHhhhc
Q 008794 346 GNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTI-FGEKLREQVEERLDFYDK 413 (553)
Q Consensus 346 ~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~-~G~~lr~~ie~rl~~l~~ 413 (553)
++||||||||||++|+++||++||||+|+||+||+||||||+|++.+++. ||.+||++|++||++|++
T Consensus 81 ~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e 149 (150)
T PF01798_consen 81 AKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQE 149 (150)
T ss_dssp -SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999995 999999999999999985
No 7
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.86 E-value=5.3e-22 Score=155.71 Aligned_cols=53 Identities=57% Similarity=0.998 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhc
Q 008794 170 MVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIED 222 (553)
Q Consensus 170 ~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~ 222 (553)
|||||++++++||++||.+|||+|||||||||||+++|+||.+|+++|+.|||
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999997
No 8
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=99.80 E-value=4.1e-20 Score=151.64 Aligned_cols=66 Identities=48% Similarity=0.838 Sum_probs=62.0
Q ss_pred cEEEecCcceeeeeeec-cccccccchHHHHHHhhcHHhhcccEEeeeeccCCCHHHHHHHhhhhhcc
Q 008794 3 LYLLYETASGYSLFLAH-GLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEG 69 (553)
Q Consensus 3 ~~vLfEtaaGYaLFkv~-~~dei~~~~~~v~~~~~d~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG 69 (553)
||||||||+|||||+|+ +.+.++.. ++||+.+.|+.+|+++|+|++|.||+|+++||+++++|+||
T Consensus 1 m~vLfEtaaGyaLF~v~~~~~~~~~~-~~v~~~~~~~~~f~k~vkL~aF~pF~s~~~ALe~~~aiseG 67 (67)
T PF08156_consen 1 MLVLFETAAGYALFKVKDEKDEIGSD-EEVQKSFSDPEKFSKIVKLKAFSPFKSAEEALENANAISEG 67 (67)
T ss_pred CEEEEcCCCeeeeeEEechhhhhccH-HHHHHHHcCHHHHhhhhhhhhccCCCCHHHHHHHHHHhhcC
Confidence 69999999999999998 66666656 99999999999999999999999999999999999999998
No 9
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=59.14 E-value=3.7 Score=44.98 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=10.4
Q ss_pred ccccccChHHHHHHH
Q 008794 112 KIPCQSNEFVLELLR 126 (553)
Q Consensus 112 gi~c~~~~~v~EllR 126 (553)
++.|++-+.+++-+|
T Consensus 62 n~n~iSeG~~~edLr 76 (498)
T KOG2573|consen 62 NANAISEGVVHEDLR 76 (498)
T ss_pred hccccccccccHHHH
Confidence 567777777777664
No 10
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.06 E-value=24 Score=37.75 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=52.7
Q ss_pred HHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHh
Q 008794 245 KEIVEAGKASMGQDL---SAVDLVNVQMFAQRVMD-LSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHA 315 (553)
Q Consensus 245 ~~I~~aa~~SmG~~l---se~Dl~~I~~~a~~v~~-L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~A 315 (553)
..++..-.+|-|.+- ++.|++.+..+-..++. ..-.-..+.+|+...-..++| .||+||..||.-.|-.-
T Consensus 230 l~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGivaQevIk~i 303 (331)
T KOG2014|consen 230 LPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGILAQEVIKAI 303 (331)
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhHhHHHHHHHh
Confidence 344445566666654 59999988888766666 555666777889998899999 89999999998877544
No 11
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=43.29 E-value=15 Score=40.51 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=22.1
Q ss_pred HHHHHHHHhccccccchhHHHhChHHHHHHH
Q 008794 282 KKLYEYLVTKMNDIAPNLASLIGEVVGARLI 312 (553)
Q Consensus 282 ~~L~~YL~~rM~~iAPNLtaLvG~~vaArLI 312 (553)
..+..++-.|.+..--+++.++++.+-|.|=
T Consensus 203 ak~vk~mG~r~~~a~~d~sEil~eeiE~~~k 233 (498)
T KOG2572|consen 203 AKLVKAMGVRCNAASLDFSEILPEEIEAELK 233 (498)
T ss_pred HHHHHHHhHhhhhhcccHHhhchHHHHHHHH
Confidence 4455566677777777788888888777765
No 12
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=42.59 E-value=3.9e+02 Score=27.30 Aligned_cols=102 Identities=22% Similarity=0.161 Sum_probs=66.6
Q ss_pred EecChhhhhhhhhhcccccccChHHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHH
Q 008794 97 GVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIF 176 (553)
Q Consensus 97 ~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~Kvk~~~~k~D~~IIqai~ 176 (553)
.|+|.|-.-.=.=-..|+-++.-+|.||| +-.|+-+.=..|....+ +.|||-..|.+.-=-+.|+..=.-|.+|+.
T Consensus 6 TVSDtKr~F~~~~p~pI~siYrrvv~ELL--VElHLl~~n~~F~yDpl--fAlGlvt~fd~fm~GY~Pee~~~~IF~Alc 81 (214)
T TIGR03060 6 TVSDSKRAFHAAFPRVIPPLYRRVVDELL--VELHLLSHQSDFKYDPL--FALGLVTVFDRFMEGYRPEEHLDALFDALC 81 (214)
T ss_pred cHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHHHHHhccCceeCch--HHhhHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777654332211236667888888988 77777766555555554 467888889888777777766566777765
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhccCcc
Q 008794 177 LLDTL-DKDINSFSMRVREWYSWHFPE 202 (553)
Q Consensus 177 lld~l-DkeIn~~~~rlrEwYs~hFPE 202 (553)
---.. -+.++.-+..+.+|.+-+=++
T Consensus 82 ~a~~~dp~~~r~dA~~l~~~a~~~s~~ 108 (214)
T TIGR03060 82 NSNGFDPEQLREDAKQLLEQAKGKGLD 108 (214)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcCCHH
Confidence 53333 345677788888888765443
No 13
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=35.89 E-value=5.1e+02 Score=26.77 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHH
Q 008794 267 VQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARL 311 (553)
Q Consensus 267 I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArL 311 (553)
+..+.+.+.+-.+.++.+..||...+..+..+....||..|.-+|
T Consensus 278 l~~~~~~l~~~~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l 322 (367)
T PF04286_consen 278 LEELIDKLKEDPELREKINRFIENLLERIVESNHIDIGEIVEEKL 322 (367)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444446788888888888888888887777777766554
No 14
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=32.20 E-value=26 Score=41.63 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=3.0
Q ss_pred ccccCCCC
Q 008794 458 EIAVDGEP 465 (553)
Q Consensus 458 ~~~~~~~~ 465 (553)
...++++|
T Consensus 104 ~~~eE~~d 111 (1064)
T KOG1144|consen 104 GKAEEEDD 111 (1064)
T ss_pred cccccccc
Confidence 33333333
No 15
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=27.91 E-value=33 Score=32.70 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhc
Q 008794 185 INSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIED 222 (553)
Q Consensus 185 In~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~ 222 (553)
+++.+.|++.||+-.-|+++.| ++|.-|-+.+.-|-|
T Consensus 46 ~~~~~~rl~~ly~kil~~~eqI-pkn~ayRk~Tesit~ 82 (145)
T KOG3365|consen 46 CENPHERLRDLYTKILDVLEQI-PKNAAYRKYTESITN 82 (145)
T ss_pred cCCHHHHHHHHHHHhHHHHHHc-chhhhhhHHHHHHHH
Confidence 4668999999999999999986 999999987666544
No 16
>PRK13266 Thf1-like protein; Reviewed
Probab=26.28 E-value=7.3e+02 Score=25.54 Aligned_cols=102 Identities=22% Similarity=0.161 Sum_probs=68.2
Q ss_pred EecChhhhhhhhhhcccccccChHHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHH
Q 008794 97 GVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIF 176 (553)
Q Consensus 97 ~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~Kvk~~~~k~D~~IIqai~ 176 (553)
.|+|.|-.-.=.=-..|+-++.-+|.||| +-.|+-..=..|..+.+ +.|||-..|.+.-=-+.|+..=.-|.+|+.
T Consensus 6 TVSDtKr~F~~~~p~pI~siYrrvv~ELL--VElHLl~~n~~F~yDpl--fAlGlvt~fd~fm~GY~Pee~~~~IF~Alc 81 (225)
T PRK13266 6 TVSDSKRAFYAAFPRPINSIYRRVVDELL--VELHLLSVNSDFKYDPL--FALGLVTVFDRFMQGYRPEEHKDSIFNALC 81 (225)
T ss_pred cHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHHHHHhccCceeCch--HHhhHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57777654432211236667888899988 77777766555655554 467999999888777777766567777765
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhccCcc
Q 008794 177 LLDTLD-KDINSFSMRVREWYSWHFPE 202 (553)
Q Consensus 177 lld~lD-keIn~~~~rlrEwYs~hFPE 202 (553)
---..| +.++.-+..+.+|.+-+=++
T Consensus 82 ~a~~~dp~~~r~dA~~l~~~a~~~s~~ 108 (225)
T PRK13266 82 QAVGFDPEQLRQDAERLLELAKGKSLK 108 (225)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhcCCHH
Confidence 533333 55777788888888876444
No 17
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=23.90 E-value=46 Score=39.66 Aligned_cols=6 Identities=67% Similarity=0.728 Sum_probs=2.2
Q ss_pred hhhhhh
Q 008794 483 KSEKTK 488 (553)
Q Consensus 483 ~~~~~~ 488 (553)
.++++|
T Consensus 91 ~skkkk 96 (1064)
T KOG1144|consen 91 KSKKKK 96 (1064)
T ss_pred ccchhh
Confidence 333333
No 18
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=22.47 E-value=3.5e+02 Score=25.39 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhh
Q 008794 259 LSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKAL 338 (553)
Q Consensus 259 lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~LAk~PAStIQiLGAEKAL 338 (553)
+.++||..|+.+|+.|..-...=+.-...|..|+..=-||..-+. =.|---++...| ..++..=|.+.+
T Consensus 17 l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~A-L~LLe~~vkNCG----------~~fh~evas~~f 85 (142)
T cd03569 17 LGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYA-LLLLESCVKNCG----------THFHDEVASREF 85 (142)
T ss_pred cCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHH-HHHHHHHHHHCC----------HHHHHHHhhHHH
Confidence 478899999999999986555556667788888888556654333 223333444444 333333344555
Q ss_pred hHHhhhcCCCCcceeEeeccccccCccccchhHHHHH
Q 008794 339 FRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYL 375 (553)
Q Consensus 339 FraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~L 375 (553)
...|..--.. ..++.+|.|+..++
T Consensus 86 l~~l~~l~~~-------------~~~~~Vk~kil~li 109 (142)
T cd03569 86 MDELKDLIKT-------------TKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHcc-------------cCCHHHHHHHHHHH
Confidence 5444432111 34566777777665
No 19
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.24 E-value=1.4e+03 Score=28.75 Aligned_cols=165 Identities=16% Similarity=0.241 Sum_probs=86.6
Q ss_pred EEEecCcceeeeeee-ccccccccchHHHHHHhhcHHhhcccEEeeeecc----------CCCHHHHHHHhhhhhccCCC
Q 008794 4 YLLYETASGYSLFLA-HGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHP----------FESALDALNQCNSVSEGLMT 72 (553)
Q Consensus 4 ~vLfEtaaGYaLFkv-~~~dei~~~~~~v~~~~~d~~~f~k~VkL~aF~p----------F~s~~~Ale~~~~i~eG~~~ 72 (553)
+.-+|..+|-+||.+ .+.|++... |-..|.... + -=+.|.| |++..+|+--+..| ...
T Consensus 539 ~tavEvtaGNsLF~iVVdndevATk---Il~~~n~m~-~----GrVTF~PLNrl~~r~v~yp~~sdaiPli~kl---~y~ 607 (1200)
T KOG0964|consen 539 KTAVEVTAGNSLFNIVVDNDEVATK---ILRKLNKMK-G----GRVTFMPLNRLKARDVEYPKDSDAIPLISKL---RYE 607 (1200)
T ss_pred HhHHhhhcccceEEEEecccHHHHH---HHHHHHhcc-C----CeeEEeecccCchhhccCCCCCCccchHHHh---Ccc
Confidence 445788899999987 355555422 112222211 1 1233444 44444553333333 233
Q ss_pred HHHHHHHHhhCcccccccCCceEEEecChhhhhhhhhhcccccccC--hHH---HHHHHHHh----hhhhhhhccCC--c
Q 008794 73 NELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSN--EFV---LELLRGVR----LHFDRFIKDLK--P 141 (553)
Q Consensus 73 ~~Lk~FL~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~--~~v---~EllRgIR----~~~~~ll~~l~--~ 141 (553)
+....-+..-+- .++.+.|-.-+.......++.|++= +.| +-+.-|.+ +.++ +++++. .
T Consensus 608 p~fdka~k~Vfg---------ktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe-~~k~~~~~~ 677 (1200)
T KOG0964|consen 608 PQFDKALKHVFG---------KTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLE-LLKNVNESR 677 (1200)
T ss_pred hhhHHHHHHHhC---------ceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHH-HHhhhHHHH
Confidence 455555544332 4788888888888888888888521 111 00111111 1111 122221 1
Q ss_pred ccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008794 142 GDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREW 195 (553)
Q Consensus 142 ~d~~k~~lgLaHs~sR~Kvk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEw 195 (553)
.++...+-.|. .+.-..+..|+-|-|.+.-+-++..+++.|+.-.+..
T Consensus 678 ~~~~~l~~~L~------~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l 725 (1200)
T KOG0964|consen 678 SELKELQESLD------EVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKL 725 (1200)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12222222222 2444556788999999999999999999887665543
No 20
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=22.18 E-value=9.7e+02 Score=25.54 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=67.0
Q ss_pred EecChhhhhhhhhhcccccccChHHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHH
Q 008794 97 GVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIF 176 (553)
Q Consensus 97 ~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~Kvk~~~~k~D~~IIqai~ 176 (553)
.|+|.|-.-.=.=...|+-++..+|.||| +-+|+-+.=.++..+.+ +.||+-..|.+.-=-+.|+..=.-|.+|+-
T Consensus 57 TVSDTKr~F~~~yp~pIpsiYrrvvdELL--VElHLLs~n~~F~yDpl--FALGlVtvfd~fm~GY~Pee~~~~IF~Alc 132 (283)
T PLN00047 57 TVAETKAKFLKSYKRPIPSIYSTVLQELL--VQQHLMRYKKTYRYDPV--FALGFVTVYDQLMEGYPSDEDRDAIFKAYI 132 (283)
T ss_pred cHHHHHHHHHHhCCCCCcHHHHHHHHHHH--HHHHHHHhccCceeCch--hhhhhHHHHHHHHccCCChHHHHHHHHHHH
Confidence 46666544332211136668888999998 77788777655665555 467888999887777777665566666654
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhccCcc
Q 008794 177 L-LDTLDKDINSFSMRVREWYSWHFPE 202 (553)
Q Consensus 177 l-ld~lDkeIn~~~~rlrEwYs~hFPE 202 (553)
- +..=-+.++.-+..+.+|..-+=++
T Consensus 133 ~a~g~Dp~qyr~dA~~l~~~A~~~s~~ 159 (283)
T PLN00047 133 KALGEDPEQYRKDAAKLEEWARSQTGS 159 (283)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhcCCHH
Confidence 4 3333355777788888888765543
No 21
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=21.83 E-value=52 Score=27.64 Aligned_cols=17 Identities=41% Similarity=0.854 Sum_probs=14.5
Q ss_pred HHHHHHHhccCcchhhc
Q 008794 190 MRVREWYSWHFPELVKI 206 (553)
Q Consensus 190 ~rlrEwYs~hFPEL~~i 206 (553)
..||+.|+..||||..-
T Consensus 26 e~V~dfYs~~YPeLttA 42 (66)
T TIGR03738 26 EQVRDFYSAQYPELLNA 42 (66)
T ss_pred HHHHHHHhccCchheee
Confidence 46899999999999753
No 22
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=21.21 E-value=2.9e+02 Score=24.28 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=20.3
Q ss_pred cccccChHHHHHHHHHhhhhhhhhccCCc
Q 008794 113 IPCQSNEFVLELLRGVRLHFDRFIKDLKP 141 (553)
Q Consensus 113 i~c~~~~~v~EllRgIR~~~~~ll~~l~~ 141 (553)
..| +++.|.|++-.||.++..++. |++
T Consensus 12 ~rC-SGnSvsEVL~~~k~N~D~~~a-L~~ 38 (97)
T PF11043_consen 12 RRC-SGNSVSEVLDNIKNNYDAFMA-LPP 38 (97)
T ss_pred ccc-cCccHHHHHHHHHHHHHHHHc-CCh
Confidence 345 345688999999999999984 543
No 23
>PF07913 DUF1678: Protein of unknown function (DUF1678); InterPro: IPR012465 This family is composed of uncharacterised proteins expressed by Methanopyrus kandleri, a hyperthermophilic archaeon.
Probab=20.33 E-value=1.5e+02 Score=29.32 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=47.5
Q ss_pred HHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhc
Q 008794 123 ELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVR----EWYSW 198 (553)
Q Consensus 123 EllRgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~Kvk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlr----EwYs~ 198 (553)
-+||.+|+-+..++..++...+.++.--|+-.+ .+.|+......-=| =.+|+.|-..+..|..|.- .||+.
T Consensus 95 HlmRnlRsvLktlL~evs~lpyk~ar~VL~rgl---al~FdarP~~sp~I--rdlLe~lPdrlesflvrtLg~WPa~Ys~ 169 (201)
T PF07913_consen 95 HLMRNLRSVLKTLLTEVSDLPYKKARRVLARGL---ALAFDARPSESPRI--RDLLEELPDRLESFLVRTLGGWPAHYSS 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcc---cccccCCCCCCchH--HHHHHhCccHHHHHHHHHhcCCcHHHHH
Confidence 478999999999998888777777765555544 35555443333222 3467777777777777754 46654
Q ss_pred c
Q 008794 199 H 199 (553)
Q Consensus 199 h 199 (553)
|
T Consensus 170 ~ 170 (201)
T PF07913_consen 170 H 170 (201)
T ss_pred H
Confidence 4
No 24
>PLN02967 kinase
Probab=20.20 E-value=60 Score=37.54 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=8.8
Q ss_pred ccccccCCCCCCCchhhhhh
Q 008794 469 DKVAATNGDASEEPKSEKTK 488 (553)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~ 488 (553)
.....++.++.-+..+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~ 114 (581)
T PLN02967 95 GSELVVNEDAALDKESKKTP 114 (581)
T ss_pred cceEEecCccccccccccCc
Confidence 33344455554444443333
No 25
>cd08801 Death_UNC5D Death domain found in Uncoordinated-5D. Death Domain (DD) found in Uncoordinated-5D (UNC5D). UNC5D is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.07 E-value=2.1e+02 Score=25.71 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=52.9
Q ss_pred ccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHhhcchhh
Q 008794 364 SARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTE 437 (553)
Q Consensus 364 p~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~G~~lr~~ie~rl~~l~~~~~p~kn~~~m~~~~~~~~~~~~~ 437 (553)
+|..+|.==|+||-|+.|=.=|-||...+++. .. -|..|+....+..|++.+..|++++.....-
T Consensus 15 ~p~~kg~DWR~LA~kL~iDRyl~yFatk~SPT------~v---iLdLWEa~~~~~g~L~~La~aleeiGr~~~~ 79 (98)
T cd08801 15 TPNAKGKDWQMLAQKNSIDRNLSYFATQSSPS------AV---ILSLWEARHQHDGDLDSLACALEEIGRTHSK 79 (98)
T ss_pred CCCCCCccHHHHHHHhcchhHHHHHhcCCChH------HH---HHHHHHHhcCCCCCHHHHHHHHHHhCcchhh
Confidence 45677888899999999999999998876654 12 3789998899999999999999998765443
Done!