Query 008794
Match_columns 553
No_of_seqs 219 out of 695
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pla_A NOP5, PRE mRNA splicing 100.0 1E-110 5E-115 875.1 29.7 372 1-416 1-379 (388)
2 2nnw_A NOP5/NOP56 related prot 100.0 2E-103 8E-108 820.9 28.5 359 4-411 13-375 (376)
3 3icx_A PRE mRNA splicing prote 100.0 3.8E-88 1.3E-92 674.6 19.9 245 166-416 2-246 (255)
4 2ozb_B U4/U6 small nuclear rib 100.0 1E-85 3.5E-90 660.4 21.9 249 163-413 12-260 (260)
5 1nt2_B Conserved hypothetical 100.0 2E-70 6.7E-75 546.7 11.5 206 141-413 47-257 (258)
6 3id6_A NOP5, PRE mRNA splicing 100.0 1.5E-67 5E-72 530.5 23.0 258 1-297 1-263 (268)
7 3gqu_A NOP5P protein; RNA bind 100.0 1.2E-50 4.1E-55 380.3 4.0 135 277-414 15-149 (169)
8 2a1j_A DNA repair endonuclease 52.7 9.4 0.00032 29.8 3.0 41 303-343 12-56 (63)
9 4fbj_A CIF, hypothetical prote 37.3 9.5 0.00033 37.4 0.9 64 312-378 99-173 (261)
10 2a1j_B DNA excision repair pro 35.2 31 0.0011 28.3 3.6 35 303-337 40-77 (91)
11 3swh_A MUNC13-1, protein UNC-1 31.8 2E+02 0.0067 29.6 9.8 78 116-218 50-132 (341)
12 1z00_A DNA excision repair pro 29.7 31 0.0011 28.0 2.7 42 303-344 27-73 (89)
13 1x2i_A HEF helicase/nuclease; 27.5 34 0.0012 26.3 2.5 35 303-337 22-59 (75)
14 1kea_A Possible G-T mismatches 24.6 2E+02 0.0069 27.2 7.9 40 180-220 4-43 (221)
15 3efy_A CIF (cell cycle inhibit 22.9 40 0.0014 31.7 2.3 25 344-368 74-98 (195)
16 1kft_A UVRC, excinuclease ABC 22.2 34 0.0012 27.1 1.6 29 302-330 31-59 (78)
No 1
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=100.00 E-value=1.4e-110 Score=875.09 Aligned_cols=372 Identities=33% Similarity=0.487 Sum_probs=345.1
Q ss_pred CccEEEecCcceeeeeeeccccccccchHHHHHHhhcHHhhcccEEeeeeccCC-CHHHHHHHhhhhhccCCCHHHHHHH
Q 008794 1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFE-SALDALNQCNSVSEGLMTNELRNFL 79 (553)
Q Consensus 1 m~~~vLfEtaaGYaLFkv~~~dei~~~~~~v~~~~~d~~~f~k~VkL~aF~pF~-s~~~Ale~~~~i~eG~~~~~Lk~FL 79 (553)
|+-.+|+|++.||.+|. +- .+|++|.||+ |+++|++++++|++|++++.|++||
T Consensus 1 ~~k~yl~~~~~G~~a~d-----e~--------------------~~l~~~~~f~~s~~~ale~~~~i~eg~~~~~L~~fL 55 (388)
T 3pla_A 1 MVKIYLIEHVIGAVAYD-----EN--------------------GNIVDYITNPRDLGKITEELLNNEKGIPFSATVELL 55 (388)
T ss_dssp --CEEEEEETTEEEEEC-----SS--------------------SCEEEEEECCSCHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CceEEEEecceeeEEEC-----CC--------------------CCeEeecCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55588999999999993 21 2788999997 9999999999999999999999999
Q ss_pred HhhCcccccccCCceEEEecChhhhhhhhhhcccccc--cChHHHHHHHHHhhhhhhhhc--cCC--cccHHHHHhhhhH
Q 008794 80 ELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQ--SNEFVLELLRGVRLHFDRFIK--DLK--PGDLEKAQLGLGH 153 (553)
Q Consensus 80 ~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~--~~~~v~EllRgIR~~~~~ll~--~l~--~~d~~k~~lgLaH 153 (553)
+.|+| .+|+|+|++||.+|++. |++|. +++ .++|+||.|+.+++. ++. ++|+.++++||+|
T Consensus 56 ~~~~~---------~~l~V~d~~L~~~i~~~-~~~~~~~~~~---~~~~~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~ 122 (388)
T 3pla_A 56 KKVNP---------QEVVVENEAEVPKLQAL-GYRVSYEPYS---KVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSL 122 (388)
T ss_dssp HHSCC---------SEEEESCTTTHHHHHHT-TCEEEECTTC---HHHHHHHHTTTTHHHHTTSSSSSHHHHHHHHHHHH
T ss_pred HHhCC---------CeEEEECHHHHHHHHHc-CCCeeecCch---HHHHHHHHhHHHHhHhcCCCCChHHHHHHHHHHHH
Confidence 99876 36999999999999986 89886 444 566888999999997 455 7899999999999
Q ss_pred HHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhh
Q 008794 154 SYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPA 233 (553)
Q Consensus 154 s~sR~Kvk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~ 233 (553)
+|||+||+|++++.|+||||||+++|+||++||+|+||||||||||||||++||+||.+|+++|+.||||.+++.+++.+
T Consensus 123 ~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~~iV~d~~~Yak~V~~ignr~~~~~~~l~~ 202 (388)
T 3pla_A 123 EYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKE 202 (388)
T ss_dssp HHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGTTTCCCHHHHHHHHHHTCSGGGCCHHHHHT
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcCCHHHHHHHHHHhcCcccCChhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766555
Q ss_pred hhhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHH
Q 008794 234 LTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLIS 313 (553)
Q Consensus 234 l~~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs 313 (553)
+ ..+++.++.|..+|++|||++||+.|+.+|..+|++|++|.++|+.|.+||++||..||||||+|||+.||||||+
T Consensus 203 l---~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs 279 (388)
T 3pla_A 203 L---GFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLS 279 (388)
T ss_dssp T---TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHHHHHHHH
Confidence 4 2346778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcchhccCCchHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCC
Q 008794 314 HAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNT 393 (553)
Q Consensus 314 ~AGsL~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~ 393 (553)
|||||.+||||||||||+|||||||||||+|+++|||||+||||++|+++|||+||||+|+||+|||||||||+|+++
T Consensus 280 ~AGgL~~LAK~PAstIQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAaK~aLAARiD~~~g~-- 357 (388)
T 3pla_A 280 IAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGR-- 357 (388)
T ss_dssp HHSSHHHHHTSCHHHHTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred HcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHHHHHHHHhhcccCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred chHHHHHHHHHHHHHHhhhcCCC
Q 008794 394 TIFGEKLREQVEERLDFYDKGVA 416 (553)
Q Consensus 394 ~~~G~~lr~~ie~rl~~l~~~~~ 416 (553)
.||.+||++|++||++|.++..
T Consensus 358 -~~G~~lreeie~ri~kl~e~~~ 379 (388)
T 3pla_A 358 -FIGDQLNEQLKKRIDEIKEKFA 379 (388)
T ss_dssp -CCHHHHHHHHHHHHHHHHCC--
T ss_pred -ccCHHHHHHHHHHHHHHhCccc
Confidence 5799999999999999998654
No 2
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=100.00 E-value=2.3e-103 Score=820.87 Aligned_cols=359 Identities=33% Similarity=0.517 Sum_probs=319.4
Q ss_pred EEEecCcceeeeeeeccccccccchHHHHHHhhcHHhhcccEEeeeeccCCCHHHHHHHhhhhhccCCCHHHHHHHHhhC
Q 008794 4 YLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNL 83 (553)
Q Consensus 4 ~vLfEtaaGYaLFkv~~~dei~~~~~~v~~~~~d~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~~nl 83 (553)
.+|+||+.|| |.+.+.. ++++|.||+++.+|++++ +++|++++.|++||+. +
T Consensus 13 ~~l~~~~~G~--~~~~e~g-----------------------~~~~~~~f~~~~~al~~~--~~eg~~~~~l~~~l~~-~ 64 (376)
T 2nnw_A 13 AFISENVRGI--YAFDENG-----------------------NLIEKRYFTDKPEKVLDQ--LLKGEITKDLEELLNS-L 64 (376)
T ss_dssp -CEEECSSEE--EEBCSSS-----------------------CBCCCEECSSCHHHHHHH--HTTTCCCHHHHHHHHH-H
T ss_pred HHHHhcccee--EEEcCCC-----------------------ceEeeeeCCChHHHHHHH--HHcCCCCHHHHHHHHh-c
Confidence 6899999999 4443211 356899999999999976 5899999999999987 4
Q ss_pred cccccccCCceEEEecChhhhhhhhhhccccc--ccChHHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhh
Q 008794 84 PKVKEGKKAKFSLGVSEPKIGSHIFEETKIPC--QSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVK 161 (553)
Q Consensus 84 pk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c--~~~~~v~EllRgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~Kvk 161 (553)
|+ ++.++|+|+|++||.+|++ +|++| +++..|++++ |.|+++|+ +.|+.++++||+|+|||+||+
T Consensus 65 ~~-----~~~~~l~v~d~~l~~~i~~-~~~~~~~~~~~~~~~~~---R~~~~~l~----~~d~~~~~~~l~h~~sr~Kvk 131 (376)
T 2nnw_A 65 KE-----KGYDEFVFEHPELSRRAKE-LGFSATTEFPNIAGERL---RSNPEEFL----GENWFEEYYKVGVALTRMRIQ 131 (376)
T ss_dssp HT-----TTCCCEEESSHHHHHHHHT-TTCCEEECTTCHHHHHH---HHCTHHHH----CSSHHHHHHHHHHHHHHHHSC
T ss_pred cc-----ccCeEEEEcCHHHHHHHHh-cCCceeeecCcHHHHHH---HHHHHHhh----hhHHHHHHHHHHHHHHHhhhc
Confidence 42 2347899999999999999 88888 4788887776 99999999 689999999999999999999
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhhhhhh-cCC
Q 008794 162 FNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDI-LGD 240 (553)
Q Consensus 162 ~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~~i-l~~ 240 (553)
|++++.|+||||+|+++|+||++||+|+||||||||||||||++||+||.+|+++|+.|||+.+++.++ |.++ ++
T Consensus 132 ~~~~k~D~~Iiqai~llddlDkeIn~~~~rlrewY~~~FPEL~~lV~d~~~Y~k~V~~ig~~~~l~~~~---L~~i~l~- 207 (376)
T 2nnw_A 132 EQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEV---LRELGLS- 207 (376)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHTCSGGGCCSHH---HHHTTCC-
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHhhcCCHHHHHHHHHHhCCccccCHhh---HHHcCCC-
Confidence 999999999999999999999999999999999999999999999999999999999999999997654 4445 65
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcch
Q 008794 241 EDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTN 320 (553)
Q Consensus 241 ~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~ 320 (553)
++.++.|..+|++|||++||+.|+.+|..+|+++++|.++|++|.+||++||..||||||+|||+.+|||||+|||||.+
T Consensus 208 ~~~~~~I~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG~~vaArLIs~AGgL~~ 287 (376)
T 2nnw_A 208 EEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRE 287 (376)
T ss_dssp HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhChHHHHHHHHHhCCHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchH-HHH
Q 008794 321 LAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIF-GEK 399 (553)
Q Consensus 321 LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~-G~~ 399 (553)
||||||||||||||||||||||+|+++|||||+||||++||++|||+||||+|+||+|||||||||||++ .+ |.+
T Consensus 288 LAK~PAstIQiLGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~~~kgKiaR~LAaK~aLAARiD~~~g----~~~G~~ 363 (376)
T 2nnw_A 288 LAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSG----EYIAEE 363 (376)
T ss_dssp HHHSCHHHHHTTTCC-------------CCCCGGGGSHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCHHH
T ss_pred HhhCChHHHHHhccchhhHHHhccCCCCCCceEEeCCHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcCC----cccCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999964 45 999
Q ss_pred HHHHHHHHHHhh
Q 008794 400 LREQVEERLDFY 411 (553)
Q Consensus 400 lr~~ie~rl~~l 411 (553)
+|++|++||++|
T Consensus 364 lre~ie~rl~~i 375 (376)
T 2nnw_A 364 LKKELEARIREI 375 (376)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 3
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.8e-88 Score=674.59 Aligned_cols=245 Identities=44% Similarity=0.707 Sum_probs=214.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhhhhhhcCChHHHH
Q 008794 166 RVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAK 245 (553)
Q Consensus 166 k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~~il~~~~~~~ 245 (553)
+.|+||||||+++|+||++||+|+||||||||||||||++||+||.+|+++|+.|||+.+++.+++.+ +..+++.++
T Consensus 2 k~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~~~~~~~~~l~~---l~l~~~~~~ 78 (255)
T 3icx_A 2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKE---LGFNEQRIN 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCSGGGCCHHHHHT---TTCCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcCCCCCChhhHHH---ccCCHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999998766555 423467789
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCC
Q 008794 246 EIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCP 325 (553)
Q Consensus 246 ~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~LAk~P 325 (553)
.|..+|++|||++||+.|+.+|..+|++|++|.++|+.|.+||++||..||||||+|||+.||||||+|||||.+|||||
T Consensus 79 ~i~~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAk~P 158 (255)
T 3icx_A 79 RILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMP 158 (255)
T ss_dssp HHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHSSHHHHTTSC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHHHHHHHHHcCCHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHHH
Q 008794 326 SSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVE 405 (553)
Q Consensus 326 AStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~G~~lr~~ie 405 (553)
|||||+|||||||||||+|+++||||||||||++|+++|||+||||+|+||+|||||||||+|+++ .||.+||++|+
T Consensus 159 AstIqiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~~g~---~~G~~lre~ie 235 (255)
T 3icx_A 159 ASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGR---FIGDQLNEQLK 235 (255)
T ss_dssp HHHHTTCC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred hHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 47999999999
Q ss_pred HHHHhhhcCCC
Q 008794 406 ERLDFYDKGVA 416 (553)
Q Consensus 406 ~rl~~l~~~~~ 416 (553)
+||++|+++..
T Consensus 236 ~ri~kl~e~~~ 246 (255)
T 3icx_A 236 KRIDEIKEKFA 246 (255)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHhCccc
Confidence 99999998654
No 4
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=100.00 E-value=1e-85 Score=660.43 Aligned_cols=249 Identities=27% Similarity=0.481 Sum_probs=227.9
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhhhhhhcCChH
Q 008794 163 NVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDED 242 (553)
Q Consensus 163 ~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~~il~~~~ 242 (553)
..+.+|.||||+|+++|+||+|||+||||||||||||||||++||+||.+|+++|+.|||+.+++.. ..+|.++++ ++
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~~-~~~L~~iL~-~~ 89 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN-NENLQQILT-NA 89 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTT-CTTGGGTSC-HH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhccc-hHHHHHHcC-HH
Confidence 3456899999999999999999999999999999999999999999999999999999999887642 245677787 45
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhc
Q 008794 243 KAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLA 322 (553)
Q Consensus 243 ~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~LA 322 (553)
.++.|..+|++|||++||+.|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||
T Consensus 90 ~~~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGsL~~La 169 (260)
T 2ozb_B 90 TIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLS 169 (260)
T ss_dssp HHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCCHHHHh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHhhhhhhhhhHHhhhcCCCCcceeEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHH
Q 008794 323 KCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLRE 402 (553)
Q Consensus 323 k~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~G~~lr~ 402 (553)
||||||||+||||||||+||+|+++|||||+||||++|+++||++||||+|+||+|||||||||+|++.+++.||.++|+
T Consensus 170 k~PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G~~lr~ 249 (260)
T 2ozb_B 170 KMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKD 249 (260)
T ss_dssp TSCHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHH
T ss_pred hCCcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 008794 403 QVEERLDFYDK 413 (553)
Q Consensus 403 ~ie~rl~~l~~ 413 (553)
+|++||++|++
T Consensus 250 ~ie~rl~~~~e 260 (260)
T 2ozb_B 250 EIERKFDKWQE 260 (260)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999999974
No 5
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=100.00 E-value=2e-70 Score=546.68 Aligned_cols=206 Identities=30% Similarity=0.516 Sum_probs=181.5
Q ss_pred cccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHh
Q 008794 141 PGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLI 220 (553)
Q Consensus 141 ~~d~~k~~lgLaHs~sR~Kvk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i 220 (553)
+.|+....++++|+|||+||+|++++.|+||||+|+++|+||++||+|+||||||||| |
T Consensus 47 ~~~y~~~l~~~~~~~sr~kvk~~~~~~D~~Iiqai~lld~idkein~~~~rvrewY~~--~------------------- 105 (258)
T 1nt2_B 47 GKDYYRILRKTALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAV--K------------------- 105 (258)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHTT--C-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C-------------------
Confidence 5789999999999999999999999999999999999999999999999999999997 0
Q ss_pred hcCCCCCCCChhhhhhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Q 008794 221 EDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLA 300 (553)
Q Consensus 221 ~~r~~l~~~~l~~l~~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLt 300 (553)
+| +||+ .+|+++++|.++|+.|.+||++||..||||||
T Consensus 106 --------------------------------~S---~ise-------~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLs 143 (258)
T 1nt2_B 106 --------------------------------ES---EITE-------KFEKKIRELRELRRDVEREIEEVMEKIAPNMT 143 (258)
T ss_dssp --------------------------------CC---TTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred --------------------------------CC---cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 11 3443 89999999999999999999999999999999
Q ss_pred HHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhhhHHh---hhc--CCCCcceeEeeccccccCccccchhHHHHH
Q 008794 301 SLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRAL---KTR--GNTPKYGLIFHSSFIGRASARNKGRMARYL 375 (553)
Q Consensus 301 aLvG~~vaArLIs~AGsL~~LAk~PAStIQiLGAEKALFraL---kt~--~~tPK~GlIy~s~lV~~ap~~~rgKiaR~L 375 (553)
+|||+.||||||+|||||.+||+|||||||+|||||+||+|| +|+ ++||||||||||++|+++||++||||+|+|
T Consensus 144 aLvG~~vaArLI~~AGgL~~LAk~PAstIqiLGAeKalf~~l~~~~t~~~~~~pk~G~Iy~s~~V~~ap~~~rgK~aR~L 223 (258)
T 1nt2_B 144 ELVGAKVAAKLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPKAKRGKMARFL 223 (258)
T ss_dssp HHHCHHHHHHHHHHHCSHHHHHTCCHHHHTTSSCC--------------------CCGGGGSHHHHTSCSSSSHHHHHHH
T ss_pred HHhCcHHHHHHHHHhCCHHHHhhCCHHHHHHhccchHHHhhhhccccccCCCCCCcceEecCHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 999999999999999999999999999999
Q ss_pred HhHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHhhhc
Q 008794 376 ANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDK 413 (553)
Q Consensus 376 AaK~aLAARiD~f~~~~~~~~G~~lr~~ie~rl~~l~~ 413 (553)
|+|||||||||+|++ .||.++|++|++||++|.+
T Consensus 224 AaK~aLAARiD~~~g----~~G~~lre~ie~rl~k~~e 257 (258)
T 1nt2_B 224 AAKLAIAAKIDYFRG----EIDESLYESIRRRYEELRR 257 (258)
T ss_dssp HHHHHHHHHHHHHTC----SCCTHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhhCC----cccHHHHHHHHHHHHHHhh
Confidence 999999999999964 5899999999999999975
No 6
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-67 Score=530.52 Aligned_cols=258 Identities=26% Similarity=0.343 Sum_probs=233.1
Q ss_pred CccEEEecCcceeeeeeeccccccccchHHHHHHhhcHHhhcccEEeeeeccCC-CHHHHHHHhhhhhccCCCHHHHHHH
Q 008794 1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFE-SALDALNQCNSVSEGLMTNELRNFL 79 (553)
Q Consensus 1 m~~~vLfEtaaGYaLFkv~~~dei~~~~~~v~~~~~d~~~f~k~VkL~aF~pF~-s~~~Ale~~~~i~eG~~~~~Lk~FL 79 (553)
|+-.+|+|++.||..|. +- -+|++|.||+ |+++||+++++|++|++++.|++||
T Consensus 1 ~mk~yl~~~~~G~~a~d-----e~--------------------g~lv~f~pF~~s~~~ale~~~~i~eG~~~~~L~~fL 55 (268)
T 3id6_A 1 MVKIYLIEHVIGAVAYD-----EN--------------------GNIVDYITNPRDLGKITEELLNNEKGIPFSATVELL 55 (268)
T ss_dssp -CEEEEEEETTEEEEEC-----TT--------------------SCEEEEEECCSCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CceEEEEecceeeEEEC-----CC--------------------CCeeeecCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55588999999999993 21 2899999999 9999999999999999999999999
Q ss_pred HhhCcccccccCCceEEEecChhhhhhhhhhcccccccChHHHHHHHHHhhhhhhhhc--cCC--cccHHHHHhhhhHHH
Q 008794 80 ELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIK--DLK--PGDLEKAQLGLGHSY 155 (553)
Q Consensus 80 ~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~~ll~--~l~--~~d~~k~~lgLaHs~ 155 (553)
+.|+| .+|+|+|++||.+|++. |++|.+ +.+.+++||||.|+.++++ ++. ++|+.++++||||+|
T Consensus 56 ~~~~~---------~~l~V~D~kL~~~i~~~-gi~~~~-~~~~~~~~~iR~~~~~l~~~~G~~~~~~d~~~~~lgl~hs~ 124 (268)
T 3id6_A 56 KKVNP---------QEVVVENEAEVPKLQAL-GYRVSY-EPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEY 124 (268)
T ss_dssp HHSCC---------SEEEESCTTHHHHHTTT-TCEEEE-CTTCHHHHHHHHTTTHHHHHTTSCSSHHHHHHHHHHHHHHH
T ss_pred HHhCC---------CeEEEeChHHHHHHHhc-CCCccc-CCcHHHHHHHHHhHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 99987 36999999999999987 899984 2345789999999999997 456 789999999999999
Q ss_pred HHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHhhcCCCCCCCChhhhh
Q 008794 156 SRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALT 235 (553)
Q Consensus 156 sR~Kvk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i~~r~~l~~~~l~~l~ 235 (553)
||+||+|++++.|+||||||++||+||++||+|+||||||||||||||++||+||.+|+++|+.||||.+++++++++|
T Consensus 125 sR~Klk~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREWY~~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i- 203 (268)
T 3id6_A 125 TRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKEL- 203 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGG-
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987665554
Q ss_pred hhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 008794 236 DILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAP 297 (553)
Q Consensus 236 ~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAP 297 (553)
.++ ++.++.|..||++|||++||+.||.+|..||++|++|+++|++|.+||++||..+|-
T Consensus 204 -~l~-~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~~~ 263 (268)
T 3id6_A 204 -GFN-EQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAH 263 (268)
T ss_dssp -TCC-HHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -CCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 144 678999999999999999999999999999999999999999999999999999885
No 7
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=100.00 E-value=1.2e-50 Score=380.32 Aligned_cols=135 Identities=43% Similarity=0.670 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhhhHHhhhcCCCCcceeEee
Q 008794 277 LSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFH 356 (553)
Q Consensus 277 L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaArLIs~AGsL~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~ 356 (553)
+...|..|.+||++||..||||||+|||+.||||||+|||||.+||+|||||||+|||||+||+||+++++|||||||||
T Consensus 15 ~~~~~~~L~~Yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL~~LAK~PAsnIqvLGAeKalf~~l~t~~~~pk~G~Iy~ 94 (169)
T 3gqu_A 15 MVIGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQ 94 (169)
T ss_dssp -----CCHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHHTCCSHHHHTSCC----------------CCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHhChHHHHHHHHHhCCHHHHhhCCHHHHHHHhhhhHHHHHHhcCCCCCCCCEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHhhhcC
Q 008794 357 SSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKG 414 (553)
Q Consensus 357 s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~f~~~~~~~~G~~lr~~ie~rl~~l~~~ 414 (553)
|++|+++|+++||||+|+||+||+||||||+|+++ .||..+|++|++||++|.+-
T Consensus 95 s~lV~~~p~~~rgK~aR~LAaK~aLAARiD~~~g~---~~G~~lreeie~riekl~e~ 149 (169)
T 3gqu_A 95 YPAINRSPWWQRGKIARALAGKLAIAARVDYFSGE---YIAEELKKELEARIKEIKEK 149 (169)
T ss_dssp SHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHTCC---CCCTTHHHHHHHHHHHCCCS
T ss_pred CHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999864 57999999999999999853
No 8
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=52.65 E-value=9.4 Score=29.77 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=33.9
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHH-Hhhhhhh-h--hhHHhh
Q 008794 303 IGEVVGARLISHAGSLTNLAKCPSSTL-QILGAEK-A--LFRALK 343 (553)
Q Consensus 303 vG~~vaArLIs~AGsL~~LAk~PAStI-QiLGAEK-A--LFraLk 343 (553)
||+.-..+|+.|.||+.++..++--.+ +++|.+. | ++.+|.
T Consensus 12 IG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 12 VNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp CCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 689999999999999999999998887 5678655 3 566664
No 9
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=37.33 E-value=9.5 Score=37.41 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHhcCc------chhccCCchHHHhhhhhh-hhhHH----hhhcCCCCcceeEeeccccccCccccchhHHHHHHhH
Q 008794 312 ISHAGSL------TNLAKCPSSTLQILGAEK-ALFRA----LKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANK 378 (553)
Q Consensus 312 Is~AGsL------~~LAk~PAStIQiLGAEK-ALFra----Lkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LAaK 378 (553)
++.+|+| +.|+.||||.=-|+=-.- +|-++ +-...+ |..||||||++=+++-|.+| ++--+..|
T Consensus 99 ~~Qt~~l~~~~faE~l~~L~s~kNyV~~VNDgrLGH~flIDiPa~~~-~r~ayiyQSDLG~Galp~lr--~eDWm~~r 173 (261)
T 4fbj_A 99 MAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQ-ETVGYIYQSDLGQGALPPLK--IADWLNSR 173 (261)
T ss_dssp HHHHSCBCHHHHHHHGGGSCTTCEEEEEEEETTTTEEEEEEECCCSS-CCEEEEECCBCSCSSSCCBC--HHHHHHHG
T ss_pred hhhhcccchHHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCCCC-CcceEEEecccCCCCCccee--HHHHHhhc
Confidence 4667787 678899998644432211 12121 222334 89999999999999988765 44444433
No 10
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=35.18 E-value=31 Score=28.26 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=28.3
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHHHh---hhhhhh
Q 008794 303 IGEVVGARLISHAGSLTNLAKCPSSTLQI---LGAEKA 337 (553)
Q Consensus 303 vG~~vaArLIs~AGsL~~LAk~PAStIQi---LGAEKA 337 (553)
||+..+.+|+.+.|++.+|...+...++- +|..++
T Consensus 40 IG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a 77 (91)
T 2a1j_B 40 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKA 77 (91)
T ss_dssp CCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHH
Confidence 68999999999999999998888777653 465554
No 11
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=31.77 E-value=2e+02 Score=29.56 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=45.7
Q ss_pred ccChHHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008794 116 QSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREW 195 (553)
Q Consensus 116 ~~~~~v~EllRgIR~~~~~ll~~l~~~d~~k~~lgLaHs~sR~Kvk~~~~k~D~~IIqai~lld~lDkeIn~~~~rlrEw 195 (553)
.++..|.++++.+.+ +-.++..|...|... .++.++ .+++.+-+-+..|+..|+.-
T Consensus 50 ~hSsSvvDif~~~~Q-~~~~~~~L~WpD~~~----~~~f~t-------------------~l~~~i~~~~~~Y~~~l~~~ 105 (341)
T 3swh_A 50 LFSCSVVDVFSQLNQ-SFEIIKKLECPDPQI----VGHYMR-------------------RFAKTISNVLLQYADIVSKD 105 (341)
T ss_dssp CSCTHHHHHHHHHHH-HHHHHHHSCCSCHHH----HHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH-HHHHHHHCCCCCHHH----HHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 467888999999965 445666787766542 222222 24455556666666665543
Q ss_pred HhccCcc-----hhhcccCcHhHHHHHH
Q 008794 196 YSWHFPE-----LVKIVNDNYLYARVVK 218 (553)
Q Consensus 196 Ys~hFPE-----L~~iv~d~~~Y~kvV~ 218 (553)
+.-+... ++ ++-||++|+|+..
T Consensus 106 ~~~~~~~e~~~~~C-v~lNNie~lR~~L 132 (341)
T 3swh_A 106 FASYCSKEKEKVPC-ILMNNTQQLRVQL 132 (341)
T ss_dssp HHHHCCTTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHhhhhhhcccchh-hhcccHHHHHHHH
Confidence 3222211 32 4558888888755
No 12
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=29.65 E-value=31 Score=28.02 Aligned_cols=42 Identities=31% Similarity=0.514 Sum_probs=31.9
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHHHh---hhhhhh--hhHHhhh
Q 008794 303 IGEVVGARLISHAGSLTNLAKCPSSTLQI---LGAEKA--LFRALKT 344 (553)
Q Consensus 303 vG~~vaArLIs~AGsL~~LAk~PAStIQi---LGAEKA--LFraLkt 344 (553)
||+..+-+|+.+.|++.+|...+...++- +|..++ +...+..
T Consensus 27 IG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 27 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp CCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999888877753 566655 3444544
No 13
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=27.48 E-value=34 Score=26.33 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=26.7
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHHHh---hhhhhh
Q 008794 303 IGEVVGARLISHAGSLTNLAKCPSSTLQI---LGAEKA 337 (553)
Q Consensus 303 vG~~vaArLIs~AGsL~~LAk~PAStIQi---LGAEKA 337 (553)
||+.++.+|+.+.|++.+|...+...+.- +|..++
T Consensus 22 iG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a 59 (75)
T 1x2i_A 22 VSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIA 59 (75)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHH
Confidence 68899999999999999988777666543 455444
No 14
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=24.62 E-value=2e+02 Score=27.21 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCcchhhcccCcHhHHHHHHHh
Q 008794 180 TLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLI 220 (553)
Q Consensus 180 ~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~i 220 (553)
-++..+..|..+|.+||..+...+.-. .....|--+|..|
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~pw~-~~~~pfe~lv~~I 43 (221)
T 1kea_A 4 ATNKKRKVFVSTILTFWNTDRRDFPWR-HTRDPYVILITEI 43 (221)
T ss_dssp THHHHHHHHHHHHHHHHHHSCCCCGGG-GCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhCcCC-CCCCHHHHHHHHH
Confidence 356678889999999999864332211 2333466666655
No 15
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=22.87 E-value=40 Score=31.72 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=21.0
Q ss_pred hcCCCCcceeEeeccccccCccccc
Q 008794 344 TRGNTPKYGLIFHSSFIGRASARNK 368 (553)
Q Consensus 344 t~~~tPK~GlIy~s~lV~~ap~~~r 368 (553)
...+.|+.||||||++=+.+-|.+|
T Consensus 74 ~~~n~~r~ayiyQSDLG~galp~lr 98 (195)
T 3efy_A 74 KGENSCRPAFLYQSDLGEGVTRKLR 98 (195)
T ss_dssp SCCSTTCEEEEECCBCSSSSSCCBC
T ss_pred CCCCCCcceEEEecccCCcccccee
Confidence 4468899999999999999887664
No 16
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=22.22 E-value=34 Score=27.11 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.6
Q ss_pred HhChHHHHHHHHHhcCcchhccCCchHHH
Q 008794 302 LIGEVVGARLISHAGSLTNLAKCPSSTLQ 330 (553)
Q Consensus 302 LvG~~vaArLIs~AGsL~~LAk~PAStIQ 330 (553)
=||+..+-+|+.+.|++.+|...+...++
T Consensus 31 gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~ 59 (78)
T 1kft_A 31 GVGPKRRQMLLKYMGGLQGLRNASVEEIA 59 (78)
T ss_dssp TCSSSHHHHHHHHHSCHHHHHHCCHHHHT
T ss_pred CCCHHHHHHHHHHcCCHHHHHHCCHHHHH
Confidence 37899999999999999998887776664
Done!