Query 008795
Match_columns 553
No_of_seqs 352 out of 1748
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 16:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0108 mRNA cleavage and poly 100.0 1.2E-27 2.5E-32 256.1 20.5 181 7-236 19-201 (435)
2 PLN03134 glycine-rich RNA-bind 99.8 1.6E-18 3.5E-23 161.2 16.0 84 5-88 33-116 (144)
3 PF14327 CSTF2_hinge: Hinge do 99.7 3.3E-18 7.1E-23 146.0 3.1 69 164-232 15-83 (84)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.8E-16 1.3E-20 160.1 12.9 82 6-87 269-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.6 2.1E-15 4.6E-20 158.7 15.5 84 5-88 192-277 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.7E-15 3.6E-20 156.7 12.4 82 5-86 2-83 (352)
7 TIGR01659 sex-lethal sex-letha 99.6 2.8E-15 6E-20 157.8 11.5 82 4-85 105-186 (346)
8 PF00076 RRM_1: RNA recognitio 99.6 5.6E-15 1.2E-19 117.1 10.5 70 9-79 1-70 (70)
9 KOG0149 Predicted RNA-binding 99.6 3.4E-15 7.4E-20 147.3 9.3 79 6-85 12-90 (247)
10 KOG0113 U1 small nuclear ribon 99.6 9.8E-15 2.1E-19 148.0 12.3 86 4-89 99-184 (335)
11 KOG0121 Nuclear cap-binding pr 99.5 2.5E-14 5.4E-19 130.2 7.5 82 4-85 34-115 (153)
12 TIGR01645 half-pint poly-U bin 99.5 1.1E-13 2.5E-18 154.2 13.1 82 5-86 203-284 (612)
13 PF14259 RRM_6: RNA recognitio 99.5 1.3E-13 2.8E-18 110.9 9.8 70 9-79 1-70 (70)
14 TIGR01645 half-pint poly-U bin 99.5 8.6E-14 1.9E-18 155.2 10.5 81 4-84 105-185 (612)
15 KOG0126 Predicted RNA-binding 99.5 5.9E-15 1.3E-19 141.0 0.6 82 4-85 33-114 (219)
16 KOG0122 Translation initiation 99.5 1.3E-13 2.8E-18 136.9 9.8 83 4-86 187-269 (270)
17 KOG0105 Alternative splicing f 99.5 1.5E-13 3.3E-18 131.7 9.6 84 1-87 1-84 (241)
18 TIGR01628 PABP-1234 polyadenyl 99.5 2.5E-13 5.4E-18 150.2 12.1 79 8-86 2-80 (562)
19 COG0724 RNA-binding proteins ( 99.4 4.6E-13 9.9E-18 127.4 10.7 80 6-85 115-194 (306)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.4 6.8E-13 1.5E-17 144.2 13.1 82 5-86 294-375 (509)
21 smart00362 RRM_2 RNA recogniti 99.4 8.4E-13 1.8E-17 102.5 9.7 72 8-81 1-72 (72)
22 KOG0125 Ataxin 2-binding prote 99.4 3.3E-13 7.1E-18 138.5 9.2 81 4-86 94-174 (376)
23 PLN03120 nucleic acid binding 99.4 5.6E-13 1.2E-17 134.7 10.8 76 6-85 4-79 (260)
24 TIGR01622 SF-CC1 splicing fact 99.4 7.2E-13 1.6E-17 142.3 11.7 80 6-85 186-265 (457)
25 smart00360 RRM RNA recognition 99.4 9.5E-13 2E-17 101.7 8.8 71 11-81 1-71 (71)
26 TIGR01628 PABP-1234 polyadenyl 99.4 8.6E-13 1.9E-17 146.0 11.6 81 5-86 284-364 (562)
27 KOG0148 Apoptosis-promoting RN 99.4 5.1E-13 1.1E-17 134.2 8.2 83 5-87 61-143 (321)
28 TIGR01622 SF-CC1 splicing fact 99.4 1.4E-12 3.1E-17 140.0 11.8 81 5-86 88-168 (457)
29 PF14304 CSTF_C: Transcription 99.4 3.3E-13 7.2E-18 102.4 4.1 42 509-550 4-45 (46)
30 KOG0107 Alternative splicing f 99.4 1.7E-12 3.7E-17 123.6 9.7 79 5-88 9-87 (195)
31 KOG4212 RNA-binding protein hn 99.4 2.4E-12 5.1E-17 136.0 11.3 88 4-92 42-130 (608)
32 PLN03213 repressor of silencin 99.4 1.5E-12 3.3E-17 138.9 9.8 78 5-86 9-88 (759)
33 KOG0130 RNA-binding protein RB 99.4 1.1E-12 2.3E-17 120.6 7.5 83 5-87 71-153 (170)
34 KOG4207 Predicted splicing fac 99.4 1.7E-12 3.7E-17 126.4 8.9 83 6-88 13-95 (256)
35 KOG0148 Apoptosis-promoting RN 99.4 3.3E-12 7.2E-17 128.5 10.8 82 2-89 160-241 (321)
36 TIGR01648 hnRNP-R-Q heterogene 99.4 2.2E-12 4.8E-17 143.6 10.4 80 5-85 57-137 (578)
37 TIGR01648 hnRNP-R-Q heterogene 99.3 6.8E-12 1.5E-16 139.7 13.1 75 6-88 233-309 (578)
38 cd00590 RRM RRM (RNA recogniti 99.3 1.2E-11 2.6E-16 96.5 10.5 74 8-82 1-74 (74)
39 KOG0117 Heterogeneous nuclear 99.3 3.7E-12 8.1E-17 134.9 9.6 83 4-86 81-164 (506)
40 KOG0114 Predicted RNA-binding 99.3 6.6E-12 1.4E-16 110.9 8.5 80 5-87 17-96 (124)
41 KOG0111 Cyclophilin-type pepti 99.3 1.4E-12 3.1E-17 127.9 4.6 86 5-90 9-94 (298)
42 PLN03121 nucleic acid binding 99.3 1.3E-11 2.8E-16 123.5 11.1 77 5-85 4-80 (243)
43 KOG0144 RNA-binding protein CU 99.3 5.1E-12 1.1E-16 133.5 7.4 84 5-88 33-119 (510)
44 KOG0131 Splicing factor 3b, su 99.3 4.1E-12 8.9E-17 121.7 6.1 81 4-84 7-87 (203)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.9E-11 4E-16 133.7 11.3 76 5-86 1-78 (481)
46 KOG0145 RNA-binding protein EL 99.2 1.7E-11 3.6E-16 122.9 8.9 81 6-86 41-121 (360)
47 KOG0144 RNA-binding protein CU 99.2 4.8E-12 1E-16 133.6 4.9 86 5-91 123-211 (510)
48 KOG0127 Nucleolar protein fibr 99.2 2.2E-11 4.8E-16 131.6 9.5 83 5-87 291-379 (678)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.3E-11 9.3E-16 130.9 11.7 78 5-87 274-352 (481)
50 smart00361 RRM_1 RNA recogniti 99.2 1.3E-10 2.8E-15 95.0 8.7 61 20-80 2-69 (70)
51 KOG0117 Heterogeneous nuclear 99.1 1.4E-10 3E-15 123.2 10.1 79 6-92 259-337 (506)
52 KOG0145 RNA-binding protein EL 99.1 2.1E-10 4.5E-15 115.2 10.0 82 5-86 277-358 (360)
53 KOG0124 Polypyrimidine tract-b 99.1 6.3E-11 1.4E-15 123.1 4.5 77 7-83 114-190 (544)
54 KOG0109 RNA-binding protein LA 99.1 1.2E-10 2.7E-15 118.2 6.4 72 7-86 3-74 (346)
55 PF13893 RRM_5: RNA recognitio 99.1 5.2E-10 1.1E-14 87.0 8.5 56 23-83 1-56 (56)
56 KOG0415 Predicted peptidyl pro 99.0 3.1E-10 6.8E-15 117.7 7.0 84 3-86 236-319 (479)
57 KOG0127 Nucleolar protein fibr 99.0 7.6E-10 1.6E-14 119.9 9.5 81 5-86 116-196 (678)
58 KOG0116 RasGAP SH3 binding pro 99.0 1.6E-09 3.5E-14 116.6 12.0 83 6-89 288-370 (419)
59 KOG0146 RNA-binding protein ET 99.0 3.6E-10 7.8E-15 113.8 5.6 86 2-87 281-366 (371)
60 KOG0147 Transcriptional coacti 99.0 4.2E-10 9.1E-15 122.1 6.3 79 8-86 280-358 (549)
61 KOG4205 RNA-binding protein mu 99.0 4.3E-10 9.3E-15 117.0 5.9 87 1-88 1-87 (311)
62 KOG0131 Splicing factor 3b, su 98.9 1.5E-09 3.2E-14 104.3 6.1 81 6-86 96-177 (203)
63 TIGR01642 U2AF_lg U2 snRNP aux 98.9 7.5E-09 1.6E-13 112.7 10.6 83 4-86 407-502 (509)
64 KOG4208 Nucleolar RNA-binding 98.9 4.5E-09 9.8E-14 102.7 7.6 81 6-86 49-130 (214)
65 KOG0124 Polypyrimidine tract-b 98.9 4.7E-09 1E-13 109.4 7.7 81 6-86 210-290 (544)
66 KOG4206 Spliceosomal protein s 98.8 1.1E-08 2.4E-13 101.1 8.6 81 4-87 7-91 (221)
67 KOG0123 Polyadenylate-binding 98.8 1.4E-08 3E-13 108.3 8.8 79 6-87 76-154 (369)
68 KOG0146 RNA-binding protein ET 98.8 3.8E-09 8.1E-14 106.6 4.0 83 5-88 18-103 (371)
69 KOG4212 RNA-binding protein hn 98.8 1.2E-08 2.6E-13 108.4 7.3 76 3-83 533-608 (608)
70 KOG0109 RNA-binding protein LA 98.8 8.3E-09 1.8E-13 105.1 5.7 75 5-87 77-151 (346)
71 KOG4205 RNA-binding protein mu 98.7 1.5E-08 3.2E-13 105.7 7.1 83 6-89 97-179 (311)
72 KOG0132 RNA polymerase II C-te 98.7 3.2E-08 7E-13 111.0 8.1 77 6-88 421-497 (894)
73 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.5E-08 9.7E-13 106.6 8.9 82 6-87 405-486 (940)
74 KOG0110 RNA-binding protein (R 98.7 1.8E-08 3.9E-13 112.2 4.7 83 6-88 613-695 (725)
75 KOG4209 Splicing factor RNPS1, 98.6 7.6E-08 1.6E-12 96.7 8.2 81 5-86 100-180 (231)
76 KOG0153 Predicted RNA-binding 98.6 9.7E-08 2.1E-12 99.3 9.0 74 6-85 228-302 (377)
77 KOG0123 Polyadenylate-binding 98.6 7.3E-08 1.6E-12 102.8 8.2 75 7-87 2-76 (369)
78 KOG0106 Alternative splicing f 98.6 5.7E-08 1.2E-12 96.4 5.4 73 7-87 2-74 (216)
79 KOG0110 RNA-binding protein (R 98.6 1.3E-07 2.8E-12 105.6 8.3 78 7-84 516-596 (725)
80 KOG0226 RNA-binding proteins [ 98.6 3.7E-08 8E-13 99.0 3.6 82 5-86 189-270 (290)
81 KOG0533 RRM motif-containing p 98.5 2.9E-07 6.2E-12 93.0 9.2 82 6-88 83-164 (243)
82 KOG1548 Transcription elongati 98.5 4.2E-07 9.1E-12 94.7 8.9 85 3-88 131-223 (382)
83 KOG1457 RNA binding protein (c 98.4 1.7E-06 3.6E-11 85.9 10.1 87 5-91 33-123 (284)
84 KOG4211 Splicing factor hnRNP- 98.3 1.7E-06 3.7E-11 93.5 8.5 80 4-87 8-87 (510)
85 KOG4454 RNA binding protein (R 98.3 3.2E-07 6.9E-12 90.7 1.9 82 3-86 6-87 (267)
86 PF04059 RRM_2: RNA recognitio 98.3 6.7E-06 1.5E-10 72.4 9.9 80 6-85 1-86 (97)
87 KOG4849 mRNA cleavage factor I 98.3 2.8E-05 6E-10 81.4 15.8 76 5-80 79-156 (498)
88 KOG0120 Splicing factor U2AF, 98.2 8E-07 1.7E-11 97.5 4.0 83 5-87 288-370 (500)
89 KOG4660 Protein Mei2, essentia 98.2 1.1E-06 2.4E-11 96.2 3.7 70 5-79 74-143 (549)
90 KOG4210 Nuclear localization s 98.1 3.3E-06 7.2E-11 87.4 4.6 84 5-89 183-267 (285)
91 KOG0151 Predicted splicing reg 98.0 1.1E-05 2.3E-10 90.5 6.9 81 5-85 173-256 (877)
92 KOG1995 Conserved Zn-finger pr 98.0 1.6E-05 3.5E-10 83.5 7.6 83 5-87 65-155 (351)
93 KOG0147 Transcriptional coacti 97.8 7.7E-06 1.7E-10 89.6 1.2 83 5-88 178-260 (549)
94 KOG1190 Polypyrimidine tract-b 97.6 0.00046 9.9E-09 73.9 11.3 76 6-86 297-373 (492)
95 KOG4211 Splicing factor hnRNP- 97.4 0.00028 6E-09 76.9 6.8 78 5-84 102-180 (510)
96 KOG4307 RNA binding protein RB 97.4 0.00037 8E-09 78.4 7.6 75 7-82 868-943 (944)
97 KOG4206 Spliceosomal protein s 97.4 0.00052 1.1E-08 68.5 7.9 76 4-84 144-220 (221)
98 KOG2314 Translation initiation 97.4 0.0006 1.3E-08 75.4 8.8 77 5-82 57-140 (698)
99 PF11608 Limkain-b1: Limkain b 97.3 0.00083 1.8E-08 58.0 7.0 69 7-85 3-76 (90)
100 KOG0106 Alternative splicing f 97.3 0.00023 5E-09 71.0 3.8 72 5-84 98-169 (216)
101 KOG1457 RNA binding protein (c 97.2 0.00032 7E-09 70.1 4.3 65 5-73 209-273 (284)
102 PF08777 RRM_3: RNA binding mo 97.0 0.0011 2.3E-08 59.2 5.1 70 7-82 2-76 (105)
103 KOG1855 Predicted RNA-binding 97.0 0.00067 1.5E-08 72.9 4.3 66 5-70 230-308 (484)
104 COG5175 MOT2 Transcriptional r 97.0 0.0016 3.4E-08 68.4 6.9 80 6-85 114-202 (480)
105 KOG0129 Predicted RNA-binding 96.9 0.0022 4.9E-08 70.4 7.9 64 4-67 368-432 (520)
106 KOG0120 Splicing factor U2AF, 96.9 0.002 4.3E-08 71.3 7.0 67 22-88 425-494 (500)
107 KOG0129 Predicted RNA-binding 96.7 0.0038 8.2E-08 68.7 7.5 63 6-69 259-327 (520)
108 KOG0105 Alternative splicing f 96.7 0.012 2.6E-07 57.6 10.0 61 6-73 115-175 (241)
109 KOG1548 Transcription elongati 96.6 0.0074 1.6E-07 63.7 8.3 78 5-86 264-352 (382)
110 KOG3152 TBP-binding protein, a 96.6 0.0018 3.9E-08 65.9 3.6 72 6-77 74-157 (278)
111 KOG1365 RNA-binding protein Fu 96.5 0.003 6.4E-08 67.4 4.9 80 6-86 280-362 (508)
112 KOG1456 Heterogeneous nuclear 96.4 0.035 7.5E-07 59.4 12.0 77 6-87 120-200 (494)
113 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0078 1.7E-07 47.3 5.4 52 7-65 2-53 (53)
114 KOG1190 Polypyrimidine tract-b 96.3 0.008 1.7E-07 64.6 6.8 78 4-85 412-490 (492)
115 KOG1456 Heterogeneous nuclear 96.2 0.021 4.5E-07 61.0 9.0 78 4-86 285-363 (494)
116 KOG0128 RNA-binding protein SA 96.1 0.004 8.8E-08 71.7 3.1 79 6-85 736-814 (881)
117 PF08952 DUF1866: Domain of un 96.0 0.038 8.1E-07 52.3 8.9 56 22-86 52-107 (146)
118 KOG1996 mRNA splicing factor [ 95.9 0.021 4.6E-07 59.3 7.3 67 20-86 300-367 (378)
119 KOG2416 Acinus (induces apopto 95.9 0.0075 1.6E-07 67.3 4.3 76 5-86 443-522 (718)
120 KOG1365 RNA-binding protein Fu 95.9 0.017 3.7E-07 61.8 6.7 76 7-84 162-241 (508)
121 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.063 1.4E-06 47.8 7.5 78 5-84 5-90 (100)
122 KOG4307 RNA binding protein RB 95.3 0.011 2.3E-07 67.1 2.7 79 6-85 434-513 (944)
123 KOG2193 IGF-II mRNA-binding pr 94.7 0.02 4.4E-07 61.9 2.7 75 7-89 2-79 (584)
124 KOG2202 U2 snRNP splicing fact 94.5 0.018 4E-07 58.7 1.7 63 22-85 84-147 (260)
125 KOG0128 RNA-binding protein SA 94.2 0.0031 6.8E-08 72.6 -4.8 68 6-73 667-734 (881)
126 PF10309 DUF2414: Protein of u 93.8 0.29 6.2E-06 40.1 7.0 55 6-68 5-62 (62)
127 KOG0112 Large RNA-binding prot 93.5 0.079 1.7E-06 61.9 4.5 77 5-87 454-532 (975)
128 KOG0115 RNA-binding protein p5 93.5 0.087 1.9E-06 53.9 4.3 77 7-84 32-112 (275)
129 PF08675 RNA_bind: RNA binding 93.3 0.33 7.3E-06 42.1 7.0 57 5-70 8-64 (87)
130 KOG2591 c-Mpl binding protein, 93.2 0.11 2.5E-06 57.9 5.1 68 5-79 174-245 (684)
131 KOG2253 U1 snRNP complex, subu 93.1 0.046 1E-06 61.9 1.9 69 5-82 39-107 (668)
132 KOG2068 MOT2 transcription fac 93.0 0.031 6.7E-07 58.9 0.3 80 7-86 78-163 (327)
133 PF11767 SET_assoc: Histone ly 93.0 0.41 8.9E-06 39.6 6.8 55 17-80 11-65 (66)
134 KOG4210 Nuclear localization s 92.3 0.092 2E-06 54.8 2.7 81 6-86 88-168 (285)
135 KOG4676 Splicing factor, argin 91.9 0.23 4.9E-06 53.7 5.1 79 6-85 7-88 (479)
136 KOG0112 Large RNA-binding prot 91.9 0.05 1.1E-06 63.4 0.2 79 5-84 371-449 (975)
137 PF03467 Smg4_UPF3: Smg-4/UPF3 91.5 0.43 9.4E-06 46.4 6.2 84 4-87 5-99 (176)
138 PF04847 Calcipressin: Calcipr 90.9 0.62 1.3E-05 45.8 6.6 62 19-86 8-71 (184)
139 PF07576 BRAP2: BRCA1-associat 90.0 2.3 4.9E-05 38.6 9.0 67 7-75 14-81 (110)
140 KOG4660 Protein Mei2, essentia 90.0 0.44 9.5E-06 53.4 5.2 80 7-86 389-473 (549)
141 KOG2135 Proteins containing th 87.4 0.36 7.7E-06 53.2 2.4 72 7-85 373-445 (526)
142 PF15023 DUF4523: Protein of u 87.3 2.3 5E-05 40.6 7.3 72 5-84 85-160 (166)
143 PF03880 DbpA: DbpA RNA bindin 82.2 5.3 0.00011 33.1 6.6 59 16-83 11-74 (74)
144 KOG4285 Mitotic phosphoprotein 81.9 8.4 0.00018 40.8 9.2 73 6-86 197-270 (350)
145 KOG2193 IGF-II mRNA-binding pr 79.7 0.25 5.4E-06 53.8 -2.7 79 5-87 79-158 (584)
146 KOG0804 Cytoplasmic Zn-finger 76.3 8.1 0.00018 42.8 7.4 67 6-75 74-142 (493)
147 KOG4574 RNA-binding protein (c 74.9 1.8 3.9E-05 50.9 2.2 71 10-86 302-374 (1007)
148 KOG2318 Uncharacterized conser 74.3 14 0.0003 42.2 8.7 82 4-85 172-307 (650)
149 PRK11634 ATP-dependent RNA hel 73.5 21 0.00046 41.3 10.4 62 15-85 496-562 (629)
150 KOG4410 5-formyltetrahydrofola 67.9 9.9 0.00022 40.0 5.5 56 7-68 331-394 (396)
151 KOG4454 RNA binding protein (R 55.1 2.5 5.3E-05 42.9 -1.5 68 5-73 79-150 (267)
152 COG0724 RNA-binding proteins ( 54.8 13 0.00029 35.1 3.5 59 4-62 223-281 (306)
153 KOG4676 Splicing factor, argin 54.8 1.8 3.9E-05 47.0 -2.6 63 7-74 152-214 (479)
154 PF03468 XS: XS domain; Inter 47.9 20 0.00044 32.7 3.4 56 8-66 10-75 (116)
155 KOG4019 Calcineurin-mediated s 43.8 20 0.00044 35.4 2.9 75 7-87 11-91 (193)
156 smart00596 PRE_C2HC PRE_C2HC d 42.4 38 0.00083 28.5 3.9 61 21-84 2-63 (69)
157 PF10567 Nab6_mRNP_bdg: RNA-re 40.9 51 0.0011 35.0 5.4 81 5-85 14-107 (309)
158 PF07530 PRE_C2HC: Associated 39.5 56 0.0012 27.1 4.5 62 21-85 2-64 (68)
159 KOG4483 Uncharacterized conser 38.3 63 0.0014 35.7 5.7 54 6-66 391-445 (528)
160 PF14555 UBA_4: UBA-like domai 36.7 77 0.0017 23.5 4.5 31 182-212 2-33 (43)
161 KOG2295 C2H2 Zn-finger protein 36.6 5.6 0.00012 45.0 -2.4 69 6-74 231-299 (648)
162 PF14893 PNMA: PNMA 36.2 37 0.0008 36.5 3.7 56 1-58 13-72 (331)
163 PRK11901 hypothetical protein; 33.0 1.3E+02 0.0027 32.5 6.9 61 5-70 244-306 (327)
164 KOG1924 RhoA GTPase effector D 31.3 4.7E+02 0.01 31.7 11.5 45 174-219 453-497 (1102)
165 PF14483 Cut8_M: Cut8 dimerisa 27.6 1.1E+02 0.0024 22.7 3.9 35 167-204 2-36 (38)
166 PF12687 DUF3801: Protein of u 25.7 1.2E+02 0.0026 30.3 5.1 56 17-74 38-96 (204)
167 PF15513 DUF4651: Domain of un 25.0 1.4E+02 0.0029 24.8 4.3 18 21-38 9-26 (62)
168 COG5638 Uncharacterized conser 24.2 2.1E+02 0.0046 31.9 6.8 35 50-84 260-296 (622)
169 PF11304 DUF3106: Protein of u 22.9 1.9E+02 0.0041 25.9 5.3 20 519-538 56-85 (107)
170 PF02714 DUF221: Domain of unk 22.8 81 0.0018 32.7 3.4 35 51-87 1-35 (325)
171 PRK10905 cell division protein 21.4 2.2E+02 0.0049 30.7 6.2 60 5-69 246-307 (328)
172 KOG4365 Uncharacterized conser 21.4 15 0.00032 40.8 -2.4 79 7-86 4-82 (572)
173 KOG2891 Surface glycoprotein [ 21.0 84 0.0018 33.2 3.0 44 6-49 149-209 (445)
No 1
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=256.12 Aligned_cols=181 Identities=39% Similarity=0.549 Sum_probs=149.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
++|||||||++++||+|.++|+++|.|.++++++|++||++||||||+|.+.++|.+|++.|||.+++||+|+|+|+..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccchhhHHhhhhccccccccCCCCCCcccccCCCCC
Q 008795 87 KGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQPIGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPND 166 (553)
Q Consensus 87 ~~~~r~r~~~rGG~g~~~~~~~~~~~Ggp~~~G~~~~~~P~gl~~~~~a~s~mag~lgga~~~~~~~~~gl~~~~~~a~D 166 (553)
+.+++....+.+.+... .+++- .... ..+.+
T Consensus 99 ~~~~~~~~~~~~~p~~~---------------------~~~~~-----------------------~~~~-----~~a~~ 129 (435)
T KOG0108|consen 99 KNAERSLASHNALPAEG---------------------APYSS-----------------------PSYP-----FDALK 129 (435)
T ss_pred chhHHHHhhcccCcccc---------------------ccCCC-----------------------Cccc-----ccccc
Confidence 66544332211110000 00000 0000 01336
Q ss_pred hhhHHhhcCChHHHHHHHHHHHHHH-hhCHHHHHHHHHhCCCHHHH-HHHHHHHhCCCChhhhhcccccCCC
Q 008795 167 PLTLHLAKMSRNQLNEIMSEMKLMA-TQNKEQARQLLLAKPPLLKA-LFQAQIMLGMATPQVLQMPILRQGP 236 (553)
Q Consensus 167 ~IS~~La~l~p~QL~eiLs~LK~l~-~~~P~~Ar~LL~~nPQLa~A-L~QA~llLgmid~~v~q~~~~~~~~ 236 (553)
.+...+++++++++++++..++... ..++..++.+|..+|++.++ ++|++..|++.|+++.-..+....-
T Consensus 130 ~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~s~~~~~~~~p~~~l~~~~~~~~ 201 (435)
T KOG0108|consen 130 GNGSGVSNEPPSQLFELLSQGANNTNKSNPTPNPSGLTIPPAIVVKNIPQSLVKLTLAKPFTALYILRPYAF 201 (435)
T ss_pred ccccccccCCccccccccchhhhhccccCCCcCccccccCchhhhccchhhhhhhhccChHhhhcccchhhh
Confidence 6778889999999999999999999 78899999999999999999 9999999999999998877665543
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=1.6e-18 Score=161.22 Aligned_cols=84 Identities=31% Similarity=0.659 Sum_probs=80.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
.+++|||+||++++||++|+++|++||.|++|+|++|++|++++|||||+|.+.++|++|++.|++.+|+|+.|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008795 85 NDKG 88 (553)
Q Consensus 85 ~~~~ 88 (553)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6544
No 3
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=99.71 E-value=3.3e-18 Score=146.00 Aligned_cols=69 Identities=45% Similarity=0.640 Sum_probs=58.8
Q ss_pred CCChhhHHhhcCChHHHHHHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHhCCCChhhhhcccc
Q 008795 164 PNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQVLQMPIL 232 (553)
Q Consensus 164 a~D~IS~~La~l~p~QL~eiLs~LK~l~~~~P~~Ar~LL~~nPQLa~AL~QA~llLgmid~~v~q~~~~ 232 (553)
+.|.|+++|++|++.||+|+|++||.|+.++|++||+||.+||||+|||+||+++||+||++++++++.
T Consensus 15 ~~~~Is~~l~~l~~~ql~ell~~mK~l~~~~p~~ar~lL~~nPqLa~Al~qa~l~lg~vd~~v~~~~l~ 83 (84)
T PF14327_consen 15 APDAISQTLSSLPPEQLYELLSQMKQLAQQNPEQARQLLQQNPQLAYALFQALLLLGMVDPDVVQSILK 83 (84)
T ss_dssp HHHHHHTTSSTSHHHHHHHHHHHHHHHHC----HHHHHHHS-THHHHHHHHHHHHTSS-SSSCHHH---
T ss_pred cHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCCHHHHHhhcc
Confidence 579999999999999999999999999999999999999999999999999999999999999998764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=5.8e-16 Score=160.09 Aligned_cols=82 Identities=32% Similarity=0.532 Sum_probs=78.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
+++|||+|||++++|++|+++|++||.|++|+|++|+.||++||||||+|.+.++|.+|++.|||..|+||.|+|+|+..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC
Q 008795 86 DK 87 (553)
Q Consensus 86 ~~ 87 (553)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 53
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=2.1e-15 Score=158.71 Aligned_cols=84 Identities=29% Similarity=0.461 Sum_probs=78.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING--RQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G--R~LrV~~ 82 (553)
..++|||+|||+++||++|+++|++||.|++|+|+.|+.||++||||||+|.+.++|++||+.||+..+.| +.|+|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999998865 7899999
Q ss_pred ecCCCC
Q 008795 83 AENDKG 88 (553)
Q Consensus 83 A~~~~~ 88 (553)
+++...
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 987544
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.63 E-value=1.7e-15 Score=156.72 Aligned_cols=82 Identities=28% Similarity=0.538 Sum_probs=78.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||++++|++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|++|++.|+|..|.|+.|+|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 53
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=2.8e-15 Score=157.85 Aligned_cols=82 Identities=28% Similarity=0.575 Sum_probs=79.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++||++|+++|+.||.|++|+|++|+.||+++|||||+|.|+++|++|++.|++..|.+++|+|.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 008795 84 EN 85 (553)
Q Consensus 84 ~~ 85 (553)
++
T Consensus 185 ~p 186 (346)
T TIGR01659 185 RP 186 (346)
T ss_pred cc
Confidence 75
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=5.6e-15 Score=117.08 Aligned_cols=70 Identities=41% Similarity=0.766 Sum_probs=67.7
Q ss_pred EEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 9 VFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
|||+|||+++|+++|+++|+.||.|..+++..+ .+++.+|||||+|.+.++|++|++.++|+.++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 7899999999999999999999999999999999986
No 9
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.4e-15 Score=147.33 Aligned_cols=79 Identities=29% Similarity=0.577 Sum_probs=74.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
-++||||+|+|++..|+|+++|++||+|++..|+.|+.||++||||||+|+|.+.|.+||+.-+ -.|+||+..|++|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 3689999999999999999999999999999999999999999999999999999999998654 579999999999975
No 10
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=9.8e-15 Score=148.01 Aligned_cols=86 Identities=34% Similarity=0.600 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
++-+||||+-|+++++|..|+..|+.||+|+.|+||.|+.||+++|||||||.++.+...|.+..+|..|+|+.|.|++-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCc
Q 008795 84 ENDKGA 89 (553)
Q Consensus 84 ~~~~~~ 89 (553)
....-.
T Consensus 179 RgRTvk 184 (335)
T KOG0113|consen 179 RGRTVK 184 (335)
T ss_pred cccccc
Confidence 765433
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.5e-14 Score=130.17 Aligned_cols=82 Identities=29% Similarity=0.549 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
..+++||||||++.++||+|.++|+++|+|+.|.+-.|+.+..+.|||||+|...++|+.|++.++|..++.|.|+|+|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 008795 84 EN 85 (553)
Q Consensus 84 ~~ 85 (553)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=1.1e-13 Score=154.22 Aligned_cols=82 Identities=22% Similarity=0.411 Sum_probs=78.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+||++++++++|+++|+.||.|++|+|.+|+.+|++||||||+|.+.++|.+|++.||+++|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 53
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.3e-13 Score=110.89 Aligned_cols=70 Identities=40% Similarity=0.743 Sum_probs=65.5
Q ss_pred EEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 9 VFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
|||+|||+++++++|+++|+.||.|..+++..+++ |+.+|+|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999999999999999985
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=8.6e-14 Score=155.21 Aligned_cols=81 Identities=30% Similarity=0.521 Sum_probs=76.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++||||||+++++|++|+++|+.||.|++|+|++|+.||++||||||+|.+.++|++|++.|||..|+||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 15
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=5.9e-15 Score=140.99 Aligned_cols=82 Identities=34% Similarity=0.706 Sum_probs=78.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.++..|||||||++.||.+|..+|++||+|++|.|++|+.||+++||||..|+|..+..-|+.+|||..|.||.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 008795 84 EN 85 (553)
Q Consensus 84 ~~ 85 (553)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 64
No 16
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.3e-13 Score=136.89 Aligned_cols=83 Identities=31% Similarity=0.548 Sum_probs=79.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
++.++|-|.||+.+++|++|+++|..||.|..|.|.+|++||.+||||||.|.++++|.+||+.|||+-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.5e-13 Score=131.74 Aligned_cols=84 Identities=27% Similarity=0.538 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 1 mas~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
|+...+++|||||||.++.|.+|+++|.+||.|++|.|... -..-.||||||+|..+|+.||..-+|+.++|..|+|
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRV 77 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRV 77 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEE
Confidence 66778899999999999999999999999999999998754 344679999999999999999999999999999999
Q ss_pred EEecCCC
Q 008795 81 DFAENDK 87 (553)
Q Consensus 81 ~~A~~~~ 87 (553)
+++....
T Consensus 78 Efprggr 84 (241)
T KOG0105|consen 78 EFPRGGR 84 (241)
T ss_pred EeccCCC
Confidence 9998754
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.46 E-value=2.5e-13 Score=150.17 Aligned_cols=79 Identities=27% Similarity=0.572 Sum_probs=76.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 8 tVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
+|||||||+++||++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++|++.+++..|+|+.|+|.|+..+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999998643
No 19
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=4.6e-13 Score=127.39 Aligned_cols=80 Identities=50% Similarity=0.842 Sum_probs=77.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+||++++++++|+++|..||.|..+++..|+.+|+++|||||+|.+.++|..|++.+++..|.|+.|+|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999763
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.44 E-value=6.8e-13 Score=144.20 Aligned_cols=82 Identities=33% Similarity=0.556 Sum_probs=78.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++++++|+++|+.||.|+.+.|+.|..||+++|||||+|.+.++|..|++.|+|..|+|+.|+|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 54
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=8.4e-13 Score=102.52 Aligned_cols=72 Identities=44% Similarity=0.773 Sum_probs=67.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 8 tVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
+|||+|||.++++++|+++|+.||.|.++++..++ ++++|+|||+|.+.++|++|++.+++..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7889999999999999999999999999999998873
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3.3e-13 Score=138.47 Aligned_cols=81 Identities=25% Similarity=0.495 Sum_probs=76.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
+..++|+|.|||+...|-||+.+|++||+|.+|+|++.. ..+||||||+|++.++|++|-++|||..|.||+|+|..|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 456899999999999999999999999999999999874 467999999999999999999999999999999999999
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
+.+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 865
No 23
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=5.6e-13 Score=134.70 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=71.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+||++++||++|+++|+.||.|++|+|..|++ .+|||||+|.+.++|+.|+. |+|..|.||.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 58999999999999999999999999999999998864 47999999999999999995 999999999999999874
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.42 E-value=7.2e-13 Score=142.29 Aligned_cols=80 Identities=34% Similarity=0.679 Sum_probs=77.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+||+++++|++|+++|+.||.|..|+|+.|+.+|+++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999874
No 25
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=9.5e-13 Score=101.69 Aligned_cols=71 Identities=48% Similarity=0.784 Sum_probs=67.6
Q ss_pred EecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 11 VGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 11 VGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
|+|||+++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|++.+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999998889999999999999999999999999999999998873
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.41 E-value=8.6e-13 Score=145.97 Aligned_cols=81 Identities=30% Similarity=0.534 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+||++++|+++|+++|+.||.|++|+++.| .+|+++|||||+|.+.++|.+|++.+||..|+|+.|+|.+|.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4678999999999999999999999999999999999 789999999999999999999999999999999999999997
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
.+
T Consensus 363 ~k 364 (562)
T TIGR01628 363 RK 364 (562)
T ss_pred Cc
Confidence 54
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=5.1e-13 Score=134.21 Aligned_cols=83 Identities=33% Similarity=0.556 Sum_probs=79.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
.+.-||||.|..+++-|+|++.|..||+|.+++|++|..|+|+||||||.|.+.++|++||..+||..|++|.||..||.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
.+.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 654
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.39 E-value=1.4e-12 Score=139.99 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=76.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||+|||+++++++|+++|++||.|++|+|+.|+.||+++|||||+|.+.++|.+|+. |+|..|.|+.|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 57899999999999999999999999999999999999999999999999999999999996 89999999999999875
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 167 ~~ 168 (457)
T TIGR01622 167 AE 168 (457)
T ss_pred hh
Confidence 43
No 29
>PF14304 CSTF_C: Transcription termination and cleavage factor C-terminal; PDB: 2J8P_A.
Probab=99.38 E-value=3.3e-13 Score=102.39 Aligned_cols=42 Identities=60% Similarity=0.922 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHhcCHHHhhcCChHHHHHHHHHHHHHhhhhC
Q 008795 509 PDVESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQM 550 (553)
Q Consensus 509 ~~~q~~~~~qvl~lt~~q~~~lp~~~~~~~~~l~~~~~~~~~ 550 (553)
..+|++||+|||+||+|||++|||+||.+|++||++|++|.|
T Consensus 4 d~~q~aLl~QVL~Lt~eQI~~LPp~qR~~I~~Lr~ql~~~~~ 45 (46)
T PF14304_consen 4 DPEQAALLMQVLQLTPEQINALPPDQRQQILQLRQQLMRGEM 45 (46)
T ss_dssp HHTHHHHHHHHHTS-HHHHHTS-HHHHTHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHcCCHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999999999999999976
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.7e-12 Score=123.60 Aligned_cols=79 Identities=30% Similarity=0.528 Sum_probs=72.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
-.++||||||+.++++.||+.+|..||.|..|-|-+. +.|||||||+|..+|+.|++.|+|..|.|..|+|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999999877653 48999999999999999999999999999999999998
Q ss_pred CCCC
Q 008795 85 NDKG 88 (553)
Q Consensus 85 ~~~~ 88 (553)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6554
No 31
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.37 E-value=2.4e-12 Score=135.96 Aligned_cols=88 Identities=35% Similarity=0.613 Sum_probs=78.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs-~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...+.+||.||||++.+.+|+++|+ +.|+|++|.|.+|. .||+||||.|||+++|.+++|++.||.++++||.|+|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3567799999999999999999995 68999999999995 699999999999999999999999999999999999998
Q ss_pred ecCCCCcCCC
Q 008795 83 AENDKGADRN 92 (553)
Q Consensus 83 A~~~~~~~r~ 92 (553)
........+.
T Consensus 121 d~d~q~~~~~ 130 (608)
T KOG4212|consen 121 DHDEQRDQYG 130 (608)
T ss_pred cCchhhhhhh
Confidence 8765444333
No 32
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=1.5e-12 Score=138.92 Aligned_cols=78 Identities=18% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceeCCEEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDE--ETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~--e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...+||||||.|++++++|+.+|..||.|.+|.|+ ++|| ||||||+|.+. .++.+||..|||.++.||.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35789999999999999999999999999999999 5678 99999999977 789999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9874
No 33
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.1e-12 Score=120.60 Aligned_cols=83 Identities=30% Similarity=0.471 Sum_probs=79.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+...|||.++..+++|++|.+.|..||+|+++.|..|+.||..|||++|||.+.+.|++|+..+||.+|-|..|.|+|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
.+.
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 543
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.36 E-value=1.7e-12 Score=126.42 Aligned_cols=83 Identities=25% Similarity=0.457 Sum_probs=79.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
-..|-|-||-+.++.++|+.+|++||.|.+|.|..|+.|+.++|||||.|.+..+|+.|++.|+|..|+|+.|+|.+|+.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 008795 86 DKG 88 (553)
Q Consensus 86 ~~~ 88 (553)
+..
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 654
No 35
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.3e-12 Score=128.47 Aligned_cols=82 Identities=27% Similarity=0.521 Sum_probs=76.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 2 as~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
++.++++||||||+.-++|++|++.|+.||.|.+||+.+| +||+||.|.+.|.|..||..+|+.+|+|..+||.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 4567899999999999999999999999999999999988 7999999999999999999999999999999999
Q ss_pred EecCCCCc
Q 008795 82 FAENDKGA 89 (553)
Q Consensus 82 ~A~~~~~~ 89 (553)
|-++....
T Consensus 234 WGKe~~~~ 241 (321)
T KOG0148|consen 234 WGKEGDDG 241 (321)
T ss_pred ccccCCCC
Confidence 99876543
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.35 E-value=2.2e-12 Score=143.59 Aligned_cols=80 Identities=36% Similarity=0.645 Sum_probs=74.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEe
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~-GR~LrV~~A 83 (553)
..++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+++|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 79999999999999999999999999999984 788888766
Q ss_pred cC
Q 008795 84 EN 85 (553)
Q Consensus 84 ~~ 85 (553)
..
T Consensus 136 ~~ 137 (578)
T TIGR01648 136 VD 137 (578)
T ss_pred cc
Confidence 43
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.34 E-value=6.8e-12 Score=139.69 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=69.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhcc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREV--GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~f--G~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.++|||+||+++++||+|+++|++| |.|++|+++ ++||||+|.+.++|++|++.||+.+|+|+.|+|+|+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 999999876 469999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
++...
T Consensus 305 kp~~~ 309 (578)
T TIGR01648 305 KPVDK 309 (578)
T ss_pred cCCCc
Confidence 87543
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=1.2e-11 Score=96.47 Aligned_cols=74 Identities=50% Similarity=0.814 Sum_probs=69.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 8 tVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
+|||+|||+++++++|+++|+.||.|..+.+..++.+ +.+|+|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988765 7799999999999999999999999999999999874
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.7e-12 Score=134.94 Aligned_cols=83 Identities=33% Similarity=0.597 Sum_probs=77.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-CCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI-NGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I-~GR~LrV~~ 82 (553)
...+.||||.||.|+.|++|..+|++.|+|-++||+.|+.+|.+||||||.|.+.++|++||+.||+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999 688888888
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 7653
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=6.6e-12 Score=110.86 Aligned_cols=80 Identities=26% Similarity=0.511 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..+.|||+|||+++|.|++.++|.+||.|+.|+|-.+++| +|.|||.|+|..+|++|++.|+|+.+.++.|.|-|..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4688999999999999999999999999999999877655 8999999999999999999999999999999999987
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
..+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 643
No 41
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.4e-12 Score=127.88 Aligned_cols=86 Identities=30% Similarity=0.548 Sum_probs=82.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++||||+|..+++|.-|...|-.||.|++|.+..|.+++|++|||||+|.-.|+|..||.++|+.+|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcC
Q 008795 85 NDKGAD 90 (553)
Q Consensus 85 ~~~~~~ 90 (553)
+.+.++
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 876543
No 42
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=123.46 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
...+|||+||++++||++|++||+.||+|.+|+|++|. +.+|||||+|.+.+.++.|+ .|+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 46899999999999999999999999999999999884 44689999999999999999 599999999999998876
Q ss_pred C
Q 008795 85 N 85 (553)
Q Consensus 85 ~ 85 (553)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=5.1e-12 Score=133.47 Aligned_cols=84 Identities=30% Similarity=0.519 Sum_probs=75.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCC--EEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY-EING--RQLRVD 81 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~-~I~G--R~LrV~ 81 (553)
+.-++|||-||..|+|+||+++|++||.|.+|.|++|+.||.++|||||.|.+.++|.+|+..|++. .|-| ..|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3467999999999999999999999999999999999999999999999999999999999999875 4444 569999
Q ss_pred EecCCCC
Q 008795 82 FAENDKG 88 (553)
Q Consensus 82 ~A~~~~~ 88 (553)
||+.++.
T Consensus 113 ~Ad~E~e 119 (510)
T KOG0144|consen 113 YADGERE 119 (510)
T ss_pred ccchhhh
Confidence 9987544
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=4.1e-12 Score=121.70 Aligned_cols=81 Identities=38% Similarity=0.596 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
....+||||||+..++|+.|.++|-+.|+|+++++.+|+.|.+.+|||||||.++|+|+-||+.||...+.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.27 E-value=1.9e-11 Score=133.72 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCEEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL--QGYEINGRQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~L--ng~~I~GR~LrV~~ 82 (553)
++++|||+|||++++|++|+++|+.||.|.+|+++.+ ||||||+|.+.++|++|++.+ ++..|+|+.|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5789999999999999999999999999999999854 689999999999999999864 77899999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 9754
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.7e-11 Score=122.90 Aligned_cols=81 Identities=27% Similarity=0.535 Sum_probs=77.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.+.+.|--||..+|+|||+.+|...|+|++|++++|+-||.+-|||||.|-+.++|++|+..|||..+..+.|+|.||++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 35578888999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 008795 86 D 86 (553)
Q Consensus 86 ~ 86 (553)
.
T Consensus 121 S 121 (360)
T KOG0145|consen 121 S 121 (360)
T ss_pred C
Confidence 4
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=4.8e-12 Score=133.64 Aligned_cols=86 Identities=29% Similarity=0.524 Sum_probs=77.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCC--EEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY-EING--RQLRVD 81 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~-~I~G--R~LrV~ 81 (553)
++++||||-|+..+||+||+++|++||.|++|.|.+|. -|.+||||||.|.+.+.|..||+.|||. ++.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 36889999999999999999999999999999999996 5999999999999999999999999995 5555 569999
Q ss_pred EecCCCCcCC
Q 008795 82 FAENDKGADR 91 (553)
Q Consensus 82 ~A~~~~~~~r 91 (553)
||+.++.+..
T Consensus 202 FADtqkdk~~ 211 (510)
T KOG0144|consen 202 FADTQKDKDG 211 (510)
T ss_pred ecccCCCchH
Confidence 9998765543
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.2e-11 Score=131.57 Aligned_cols=83 Identities=35% Similarity=0.554 Sum_probs=77.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-ceeCCEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL-----QG-YEINGRQL 78 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~L-----ng-~~I~GR~L 78 (553)
..++|||+||||++||++|+..|++||+|.++.|+.|+.||+++|+|||.|.+..+|.+||+.. .| +.|+||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3589999999999999999999999999999999999999999999999999999999999876 23 67899999
Q ss_pred EEEEecCCC
Q 008795 79 RVDFAENDK 87 (553)
Q Consensus 79 rV~~A~~~~ 87 (553)
+|..|..++
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 999998654
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=4.3e-11 Score=130.90 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=72.5
Q ss_pred CCcEEEEecCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 5 QHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~-dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
++++|||+||++ .+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 578999999998 69999999999999999999999874 699999999999999999999999999999999998
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+...
T Consensus 349 ~~~~ 352 (481)
T TIGR01649 349 KQQN 352 (481)
T ss_pred cccc
Confidence 7543
No 50
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=1.3e-10 Score=95.01 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=56.8
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 20 EEQLIEICR----EVGPVVSFR-LVIDRET--GKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 20 EedLre~Fs----~fG~V~~vr-Lv~Dr~T--GksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
+++|+++|+ .||.|.++. ++.|+.+ |+++|||||+|.+.++|.+|++.|||..++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678889998 999999995 8888877 999999999999999999999999999999999986
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.4e-10 Score=123.18 Aligned_cols=79 Identities=25% Similarity=0.447 Sum_probs=72.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
-+.|||+||+.++|||.|++.|++||.|++|+.++| ||||.|.++++|.+|++.+||++|+|..|.|.+|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 478999999999999999999999999999988755 999999999999999999999999999999999998
Q ss_pred CCCcCCC
Q 008795 86 DKGADRN 92 (553)
Q Consensus 86 ~~~~~r~ 92 (553)
....+..
T Consensus 331 ~~k~k~~ 337 (506)
T KOG0117|consen 331 VDKKKKE 337 (506)
T ss_pred hhhhccc
Confidence 6544333
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2.1e-10 Score=115.16 Aligned_cols=82 Identities=33% Similarity=0.537 Sum_probs=78.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
...+|||-||..+++|.-|..+|..||.|..|++++|..|.++||||||...+.++|..|+..|||+.+++|.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 54
No 53
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=6.3e-11 Score=123.12 Aligned_cols=77 Identities=31% Similarity=0.556 Sum_probs=74.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
|+||||.|.|+..|+.|+..|..||+|+++.+.+|+.|+++|||+||||+-.|.|.-|++.+||..++||.|+|..-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999753
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=1.2e-10 Score=118.24 Aligned_cols=72 Identities=35% Similarity=0.659 Sum_probs=68.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
.++||||||.++++.+|+.+|++||+|++|.|+ |.||||..+|...++.||++|++++|+|..|+|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999999 459999999999999999999999999999999999876
No 55
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.09 E-value=5.2e-10 Score=86.99 Aligned_cols=56 Identities=30% Similarity=0.612 Sum_probs=50.9
Q ss_pred HHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 23 LIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 23 Lre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
|+++|++||.|.++++..+. +++|||+|.+.++|++|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987543 689999999999999999999999999999999986
No 56
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.1e-10 Score=117.72 Aligned_cols=84 Identities=27% Similarity=0.459 Sum_probs=80.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
.++.++|||.-|..-+|+|+|+-+|+.||.|++|.+++|+.||.+..||||||.+.++|+.|.-.|++..|+.|+|.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+.+-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8753
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=7.6e-10 Score=119.94 Aligned_cols=81 Identities=25% Similarity=0.514 Sum_probs=74.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+..+|.|+||||.|.+.+|+.+|+.||.|++|.|.+.++ |+..|||||.|.+..+|..|++.+|+.+|+||.|-|+||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 367899999999999999999999999999999997766 4455999999999999999999999999999999999997
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
.+
T Consensus 195 ~K 196 (678)
T KOG0127|consen 195 DK 196 (678)
T ss_pred cc
Confidence 64
No 58
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.02 E-value=1.6e-09 Score=116.61 Aligned_cols=83 Identities=28% Similarity=0.446 Sum_probs=70.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
...|||+|||.++++++|+++|..||.|+...|......++..+||||+|.+.+.++.||.. +-..|++|+|.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999988766443456669999999999999999975 47789999999999887
Q ss_pred CCCc
Q 008795 86 DKGA 89 (553)
Q Consensus 86 ~~~~ 89 (553)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5443
No 59
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=3.6e-10 Score=113.81 Aligned_cols=86 Identities=22% Similarity=0.498 Sum_probs=81.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 2 as~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
+.++.|.|||-.||.+..+.||..+|-.||.|++.++..|+.|..+|+||||.|++..+++.||..+||+.|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC
Q 008795 82 FAENDK 87 (553)
Q Consensus 82 ~A~~~~ 87 (553)
+.+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 987654
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.00 E-value=4.2e-10 Score=122.09 Aligned_cols=79 Identities=33% Similarity=0.642 Sum_probs=75.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 8 tVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
++|||||.++++|++|+.+|+.||.|..|.+.+|.+||.+||||||+|.+.++|++|++.|||++|-||.|+|..-...
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999887654
No 61
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.99 E-value=4.3e-10 Score=116.99 Aligned_cols=87 Identities=23% Similarity=0.433 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 1 mas~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
|+..+.+++|||+|+|+++||.|++.|++||+|.+|.+++|+.|++++||+||+|++.+.+.+++. ..-+.|+||.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 345688999999999999999999999999999999999999999999999999999888888775 4557899999999
Q ss_pred EEecCCCC
Q 008795 81 DFAENDKG 88 (553)
Q Consensus 81 ~~A~~~~~ 88 (553)
+.|.++..
T Consensus 80 k~av~r~~ 87 (311)
T KOG4205|consen 80 KRAVSRED 87 (311)
T ss_pred eeccCccc
Confidence 99987543
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.92 E-value=1.5e-09 Score=104.32 Aligned_cols=81 Identities=28% Similarity=0.506 Sum_probs=75.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSF-RLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~v-rLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+..+|||||.++++|..|.+.|+.||.+... ++++|..||.++|||||.|++.+.+.+|++.++|..++.|++.|.++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 4679999999999999999999999988764 889999999999999999999999999999999999999999999997
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
.+
T Consensus 176 k~ 177 (203)
T KOG0131|consen 176 KK 177 (203)
T ss_pred ec
Confidence 54
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.87 E-value=7.5e-09 Score=112.73 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCCcEEEEecCCCCC----------CHHHHHHHHhccCCeeEEEEeec---CCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 008795 4 SQHRCVFVGNIPYDA----------TEEQLIEICREVGPVVSFRLVID---RETGKPKGYGFCEYKDEETALSARRNLQG 70 (553)
Q Consensus 4 ~~srtVFVGNLP~dv----------TEedLre~Fs~fG~V~~vrLv~D---r~TGksKGyAFVeF~d~e~A~~AI~~Lng 70 (553)
.+.++|+|.|+.+.. ..++|+++|++||.|+.|+|.++ ..++..+|++||+|.+.++|++|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 356889999996421 23679999999999999999865 34567789999999999999999999999
Q ss_pred ceeCCEEEEEEEecCC
Q 008795 71 YEINGRQLRVDFAEND 86 (553)
Q Consensus 71 ~~I~GR~LrV~~A~~~ 86 (553)
..|+||.|.|.|....
T Consensus 487 r~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 487 RKFNDRVVVAAFYGED 502 (509)
T ss_pred CEECCeEEEEEEeCHH
Confidence 9999999999998764
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=4.5e-09 Score=102.67 Aligned_cols=81 Identities=30% Similarity=0.532 Sum_probs=76.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhcc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREV-GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~f-G~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
...+||+.+|....|.++..+|.+| |.|..+++-+.+.||.+||||||||++.+.|+-|-+.||++-+.|+.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4568999999999999999999998 788889998999999999999999999999999999999999999999999998
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
++
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 76
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=4.7e-09 Score=109.44 Aligned_cols=81 Identities=22% Similarity=0.410 Sum_probs=76.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
-++|||..+..|.+|+||+.+|+.||+|++|.+-++..++.+|||||+||.+......||..+|-+.++|..|||..+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred C
Q 008795 86 D 86 (553)
Q Consensus 86 ~ 86 (553)
.
T Consensus 290 P 290 (544)
T KOG0124|consen 290 P 290 (544)
T ss_pred C
Confidence 3
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.82 E-value=1.1e-08 Score=101.07 Aligned_cols=81 Identities=23% Similarity=0.519 Sum_probs=74.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHH----HHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIE----ICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre----~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
.+..+|||.||+..+..++|+. +|++||+|.+|... .|.+.+|-|||.|.+.+.|-.|++.|+|+.+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4556999999999999999888 99999999999876 4789999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 008795 80 VDFAENDK 87 (553)
Q Consensus 80 V~~A~~~~ 87 (553)
|.||+++.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99999764
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.4e-08 Score=108.31 Aligned_cols=79 Identities=29% Similarity=0.553 Sum_probs=72.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
...|||.||+.++|..+|+++|+.||.|++|++..|.+ | +||| ||+|.++++|++|++.+||..+.|++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34499999999999999999999999999999999964 5 9999 9999999999999999999999999999988775
Q ss_pred CC
Q 008795 86 DK 87 (553)
Q Consensus 86 ~~ 87 (553)
+.
T Consensus 153 ~~ 154 (369)
T KOG0123|consen 153 KE 154 (369)
T ss_pred hh
Confidence 43
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=3.8e-09 Score=106.58 Aligned_cols=83 Identities=25% Similarity=0.473 Sum_probs=74.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCC--EEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE-ING--RQLRVD 81 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~-I~G--R~LrV~ 81 (553)
+++++|||-|...-.|||++.+|..||.|.+|.+.+.. .|.+|||+||.|.+..+|..||..|+|.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67999999999999999999999999999999999876 49999999999999999999999999864 333 459999
Q ss_pred EecCCCC
Q 008795 82 FAENDKG 88 (553)
Q Consensus 82 ~A~~~~~ 88 (553)
|++.++.
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9987653
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.77 E-value=1.2e-08 Score=108.41 Aligned_cols=76 Identities=28% Similarity=0.486 Sum_probs=70.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
....|+|||+|||+++|+..|++-|..||.|.+..|+ +.|++|| .|.|.+.++|++||+.+++..++||.|+|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3467889999999999999999999999999999985 5699998 7999999999999999999999999999987
Q ss_pred e
Q 008795 83 A 83 (553)
Q Consensus 83 A 83 (553)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 4
No 70
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=8.3e-09 Score=105.14 Aligned_cols=75 Identities=28% Similarity=0.499 Sum_probs=70.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
.+.+++||||.+.++..||+..|++||.|++|.|+ |+|+||.|+-.++|..|++.|++.+|.|++++|..+.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 57899999999999999999999999999999999 4599999999999999999999999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
++-
T Consensus 149 srl 151 (346)
T KOG0109|consen 149 SRL 151 (346)
T ss_pred ccc
Confidence 754
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.74 E-value=1.5e-08 Score=105.68 Aligned_cols=83 Identities=25% Similarity=0.502 Sum_probs=77.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++||||+|+.+++|++++++|++||.|.++.+++|.++.+.+||+||.|.+++.+++++. ...+.|+|+.+.|+.|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 5689999999999999999999999999999999999999999999999999999999885 577899999999999998
Q ss_pred CCCc
Q 008795 86 DKGA 89 (553)
Q Consensus 86 ~~~~ 89 (553)
+...
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 7543
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.69 E-value=3.2e-08 Score=110.98 Aligned_cols=77 Identities=23% Similarity=0.443 Sum_probs=72.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
++|||||.|+..++|.+|..+|+.||+|.+|.++.. +|||||+....++|++|+.+|+++.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999998754 79999999999999999999999999999999999986
Q ss_pred CCC
Q 008795 86 DKG 88 (553)
Q Consensus 86 ~~~ 88 (553)
+.-
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 543
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.69 E-value=4.5e-08 Score=106.64 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=77.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.+.|||.+|...+...+|+.+|++||+|+-.+++....+-..++|+||+..+.++|.+||..|+..+|.||.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 57899999999999999999999999999999999887778899999999999999999999999999999999999987
Q ss_pred CC
Q 008795 86 DK 87 (553)
Q Consensus 86 ~~ 87 (553)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=1.8e-08 Score=112.16 Aligned_cols=83 Identities=27% Similarity=0.489 Sum_probs=77.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|+|.|||+.++-.+|+.+|+.||.|++|+|......+.++|||||+|-+.++|.+|++.|....+.||+|.++||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 46899999999999999999999999999999988766778899999999999999999999999999999999999987
Q ss_pred CCC
Q 008795 86 DKG 88 (553)
Q Consensus 86 ~~~ 88 (553)
+..
T Consensus 693 d~~ 695 (725)
T KOG0110|consen 693 DNT 695 (725)
T ss_pred chH
Confidence 643
No 75
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=7.6e-08 Score=96.70 Aligned_cols=81 Identities=25% Similarity=0.432 Sum_probs=77.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.+.+||||+.+.+|.++++.+|+.||.|..+.+..|+.+|.+|||+||+|.+.+.++++++ |++..|.|+.++|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 56889999999999999999999999999999999999999999999999999999999998 99999999999999987
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 65
No 76
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=9.7e-08 Score=99.35 Aligned_cols=74 Identities=20% Similarity=0.411 Sum_probs=66.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEEEec
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRVDFAE 84 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~L-ng~~I~GR~LrV~~A~ 84 (553)
.++||||+|-..++|.+|+++|.+||+|++++++.. ++||||+|.+.+.|+.|.+.+ +...|+|++|+|.|..
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 478999999999999999999999999999998865 579999999999999887654 5567899999999988
Q ss_pred C
Q 008795 85 N 85 (553)
Q Consensus 85 ~ 85 (553)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 77
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=7.3e-08 Score=102.83 Aligned_cols=75 Identities=27% Similarity=0.496 Sum_probs=70.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
..+||| +++||..|+++|+.+|+|+++++.+|- | +-|||||.|.+.++|++|++.+|...|+|+.|+|-|+..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 9999999999999999999999999999999999999765
Q ss_pred C
Q 008795 87 K 87 (553)
Q Consensus 87 ~ 87 (553)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 4
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=5.7e-08 Score=96.40 Aligned_cols=73 Identities=29% Similarity=0.580 Sum_probs=67.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
..||||+|++.+.+++|+.||.+||.+.++.+. .||+||+|.|..+|..||..|++.+|.|.++.|+|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999886 579999999999999999999999999999999998854
Q ss_pred C
Q 008795 87 K 87 (553)
Q Consensus 87 ~ 87 (553)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=1.3e-07 Score=105.57 Aligned_cols=78 Identities=29% Similarity=0.562 Sum_probs=70.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETG---KPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TG---ksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
++|||.||+|++|.++|+.+|+.+|.|.++.|...++.. .+.|||||+|.+.++|.+|++.|+|..|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887654321 24599999999999999999999999999999999999
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 80
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.57 E-value=3.7e-08 Score=98.97 Aligned_cols=82 Identities=22% Similarity=0.476 Sum_probs=76.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
++++||+|.|--+++++.|...|.+|-.....++++|+.||++|||+||.|.|..++.+|++.++|..++.|.|++..+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 57899999999999999999999999988889999999999999999999999999999999999999999999887765
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
.+
T Consensus 269 wk 270 (290)
T KOG0226|consen 269 WK 270 (290)
T ss_pred HH
Confidence 44
No 81
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.54 E-value=2.9e-07 Score=93.05 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=76.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
..+|+|.||++.+++++|+++|..||.++.+.+.+|+ +|.+.|+|-|.|...++|..|++.++++.++|+.+++.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4789999999999999999999999999999999995 699999999999999999999999999999999999998876
Q ss_pred CCC
Q 008795 86 DKG 88 (553)
Q Consensus 86 ~~~ 88 (553)
...
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 543
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.48 E-value=4.2e-07 Score=94.68 Aligned_cols=85 Identities=28% Similarity=0.466 Sum_probs=76.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVS--------FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~--------vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~ 74 (553)
...+..|||.|||.++|-+++.++|++||-|.. |+|.+|. .|+.||-|.|.|-..+++.-|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345678999999999999999999999998754 7888885 4999999999999999999999999999999
Q ss_pred CEEEEEEEecCCCC
Q 008795 75 GRQLRVDFAENDKG 88 (553)
Q Consensus 75 GR~LrV~~A~~~~~ 88 (553)
|+.|+|+.|.-...
T Consensus 210 g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 210 GKKLRVERAKFQMK 223 (382)
T ss_pred CcEEEEehhhhhhc
Confidence 99999999986543
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.39 E-value=1.7e-06 Score=85.94 Aligned_cols=87 Identities=21% Similarity=0.354 Sum_probs=72.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCC-CcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETG-KPKGYGFCEYKDEETALSARRNLQGYEIN---GRQLRV 80 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TG-ksKGyAFVeF~d~e~A~~AI~~Lng~~I~---GR~LrV 80 (553)
.-+++||.+||.|+...||+.+|+.|-..+.+.|.+....+ -.+-+||++|.+..+|..|+..|||+.|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46899999999999999999999999877777776532222 23579999999999999999999999985 778999
Q ss_pred EEecCCCCcCC
Q 008795 81 DFAENDKGADR 91 (553)
Q Consensus 81 ~~A~~~~~~~r 91 (553)
++|+...+..|
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 99997655443
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.30 E-value=1.7e-06 Score=93.55 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=68.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
+..+.|-+++|||++|++||.+||+.|+ |.++.+. +++|+..|-|||||.+++++++|++ .+...++.|-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3456788899999999999999999996 7776555 4689999999999999999999997 4777899999999988
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
....
T Consensus 84 ~~~e 87 (510)
T KOG4211|consen 84 GGAE 87 (510)
T ss_pred CCcc
Confidence 7544
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.27 E-value=3.2e-07 Score=90.72 Aligned_cols=82 Identities=17% Similarity=0.292 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...+++|||+|+...++||.|.++|-+.|+|.+|.|..+++ ++.| ||||+|.++..+.-|+..+||..+.++.++|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34679999999999999999999999999999999988864 6777 999999999999999999999999999999888
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
....
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 7643
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.26 E-value=6.7e-06 Score=72.45 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=70.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhc--cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CEEEE
Q 008795 6 HRCVFVGNIPYDATEEQLIEICRE--VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN----GRQLR 79 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~--fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~----GR~Lr 79 (553)
.++|.|+|||-..|.++|.+++.. .|....+-+..|..++.+.|||||.|.+.+.+.+-.+.++|..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 368999999999999999998865 467778889999999999999999999999999999999998884 45678
Q ss_pred EEEecC
Q 008795 80 VDFAEN 85 (553)
Q Consensus 80 V~~A~~ 85 (553)
|.||+-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 888874
No 87
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.25 E-value=2.8e-05 Score=81.42 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=66.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVG--PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG--~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
...++|||||-|++|+++|.+.+...| .+.++++...+.+|.+||||+|...+....++.++.|-..+|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 456799999999999999998887766 4677888888999999999999999999999999999999998875433
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=8e-07 Score=97.48 Aligned_cols=83 Identities=36% Similarity=0.606 Sum_probs=78.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
...++||++||...++.++++++..||.+..++++.|..+|.+|||||+||.|......|+..|||..+++++|.|..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
.+.
T Consensus 368 ~g~ 370 (500)
T KOG0120|consen 368 VGA 370 (500)
T ss_pred ccc
Confidence 654
No 89
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=1.1e-06 Score=96.16 Aligned_cols=70 Identities=26% Similarity=0.420 Sum_probs=64.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
..++|+|-|||..+++++|+.+|+.||+|+.|+. |-..+|.+||+|.|..+|++|++.|++.+|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4689999999999999999999999999999653 455689999999999999999999999999999887
No 90
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.06 E-value=3.3e-06 Score=87.36 Aligned_cols=84 Identities=27% Similarity=0.485 Sum_probs=75.5
Q ss_pred CCcEEE-EecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 5 QHRCVF-VGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 5 ~srtVF-VGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++| |+++++++++++|+.+|..+|.|..+++..++.+|.++||+||+|.+..++..++.. ....+.++.+++++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345556 999999999999999999999999999999999999999999999999999999887 788999999999998
Q ss_pred cCCCCc
Q 008795 84 ENDKGA 89 (553)
Q Consensus 84 ~~~~~~ 89 (553)
......
T Consensus 262 ~~~~~~ 267 (285)
T KOG4210|consen 262 EPRPKS 267 (285)
T ss_pred CCCccc
Confidence 865443
No 91
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.99 E-value=1.1e-05 Score=90.52 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=73.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDR---ETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr---~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
..+.+||+||+..++|+.|-..|..||+|..++|++.+ +..+.+-||||.|-+..+|++|++.|+|..+.++.+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 35779999999999999999999999999999998754 445667799999999999999999999999999999999
Q ss_pred EecC
Q 008795 82 FAEN 85 (553)
Q Consensus 82 ~A~~ 85 (553)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9853
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.97 E-value=1.6e-05 Score=83.46 Aligned_cols=83 Identities=25% Similarity=0.433 Sum_probs=76.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVS--------FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR 76 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~--------vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR 76 (553)
...+|||-+|+..+++++|.++|.++|.|.. |.|-+|++|++.||-|.|.|.|...|+.|+..+++..+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4678999999999999999999999998853 67888999999999999999999999999999999999999
Q ss_pred EEEEEEecCCC
Q 008795 77 QLRVDFAENDK 87 (553)
Q Consensus 77 ~LrV~~A~~~~ 87 (553)
.|+|.+|....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999988655
No 93
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.77 E-value=7.7e-06 Score=89.58 Aligned_cols=83 Identities=28% Similarity=0.430 Sum_probs=76.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++||+--|.-.+++.+|++||+.+|.|.+|+++.|+.++++||.|||||.|.+.+-.|| .|.|..+.|..|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 4578888889999999999999999999999999999999999999999999999999999 699999999999999877
Q ss_pred CCCC
Q 008795 85 NDKG 88 (553)
Q Consensus 85 ~~~~ 88 (553)
..++
T Consensus 257 aekn 260 (549)
T KOG0147|consen 257 AEKN 260 (549)
T ss_pred HHHH
Confidence 5443
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.60 E-value=0.00046 Score=73.86 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=68.6
Q ss_pred CcEEEEecCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 6 HRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 6 srtVFVGNLP~-dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+..|.|.||.. .+|++.|..+|+.||.|.+|+|.+.+ |--|.|.|.|...|.-|++.|+|+.|.|++|||.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57788898865 58999999999999999999999875 3578999999999999999999999999999999998
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.41 E-value=0.00028 Score=76.88 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~-vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...+|-+++|||.|||+||.+||+..--|.. +.++.|+ .|++.|-|||.|++.+.|+.|+.. |...|+.|-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4578999999999999999999998755544 5566665 588999999999999999999974 556788888988877
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 96
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.39 E-value=0.00037 Score=78.43 Aligned_cols=75 Identities=25% Similarity=0.473 Sum_probs=66.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~-vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
++|-+.|+|++++-+||.+||..|-.+-. |++.+ .+.|+..|-|.|.|++.++|.+|...|++..|..|++++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~-nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR-NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEee-cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 47889999999999999999999987654 44444 46799999999999999999999999999999999988865
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.39 E-value=0.00052 Score=68.46 Aligned_cols=76 Identities=26% Similarity=0.528 Sum_probs=67.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~-GR~LrV~~ 82 (553)
.+..++|+.|||.+++.+.+..+|++|...++++++..+ ++.|||+|.+...+..|...+.+..|. ...++|.+
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 467899999999999999999999999999999998654 689999999999999999999998886 77788887
Q ss_pred ec
Q 008795 83 AE 84 (553)
Q Consensus 83 A~ 84 (553)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
No 98
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0006 Score=75.36 Aligned_cols=77 Identities=27% Similarity=0.433 Sum_probs=63.3
Q ss_pred CCcEEEEecCCCCCCH------HHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEE
Q 008795 5 QHRCVFVGNIPYDATE------EQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQ 77 (553)
Q Consensus 5 ~srtVFVGNLP~dvTE------edLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~-GR~ 77 (553)
.+.+|+|-|+|.--.. .-|.++|+++|+|+.+.+..|.++| .+||.|+||.+..+|+.|++.|||+.|+ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4678999999864322 2367889999999999999997755 9999999999999999999999999885 455
Q ss_pred EEEEE
Q 008795 78 LRVDF 82 (553)
Q Consensus 78 LrV~~ 82 (553)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55554
No 99
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.29 E-value=0.00083 Score=58.03 Aligned_cols=69 Identities=22% Similarity=0.472 Sum_probs=47.8
Q ss_pred cEEEEecCCCCCCHHH----HHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 7 RCVFVGNIPYDATEEQ----LIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 7 rtVFVGNLP~dvTEed----Lre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
..|||.|||.+.+-.. |+.++..|| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+-|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999999776 455666776 455542 4689999999999999999999999999999999
Q ss_pred EecC
Q 008795 82 FAEN 85 (553)
Q Consensus 82 ~A~~ 85 (553)
|...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9854
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.25 E-value=0.00023 Score=71.03 Aligned_cols=72 Identities=25% Similarity=0.431 Sum_probs=63.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..+.++|.++..++.+.+|.++|+.+|.+.+..+ ..+++||+|...+++.+|+..|++.++.|+.|.+.+.-
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 4678999999999999999999999999855444 26789999999999999999999999999999995443
No 101
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.22 E-value=0.00032 Score=70.06 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=54.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I 73 (553)
-+.++||.||..+++|++|+.+|+.|-....++|... .| -..||++|.+.+.|..|+..|.|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 4578999999999999999999999988777776432 22 35899999999999999998887655
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.00 E-value=0.0011 Score=59.24 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=43.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-----ceeCCEEEEEE
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG-----YEINGRQLRVD 81 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng-----~~I~GR~LrV~ 81 (553)
+.|+|.++..+++.++|+++|+.||.|.+|.+... -..|||.|.+.+.|++|+..+.. ..|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999887643 23689999999999999987643 34555555544
Q ss_pred E
Q 008795 82 F 82 (553)
Q Consensus 82 ~ 82 (553)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.98 E-value=0.00067 Score=72.94 Aligned_cols=66 Identities=33% Similarity=0.487 Sum_probs=56.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeec---CCC--CCc--------ceEEEEEeCCHHHHHHHHHHhCC
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVID---RET--GKP--------KGYGFCEYKDEETALSARRNLQG 70 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~D---r~T--Gks--------KGyAFVeF~d~e~A~~AI~~Lng 70 (553)
++++|.+.|||.+-.-|.|.++|+.||.|+.|+|+.. .+. |.. +-||||||...+.|.+|.+.++.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 6899999999999999999999999999999999865 222 222 45899999999999999998754
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.98 E-value=0.0016 Score=68.43 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=62.1
Q ss_pred CcEEEEecCCCCCCHHH----H--HHHHhccCCeeEEEEeecCC-CCCcce-E-EEEEeCCHHHHHHHHHHhCCceeCCE
Q 008795 6 HRCVFVGNIPYDATEEQ----L--IEICREVGPVVSFRLVIDRE-TGKPKG-Y-GFCEYKDEETALSARRNLQGYEINGR 76 (553)
Q Consensus 6 srtVFVGNLP~dvTEed----L--re~Fs~fG~V~~vrLv~Dr~-TGksKG-y-AFVeF~d~e~A~~AI~~Lng~~I~GR 76 (553)
.+-|||-+|+..+..|+ | .++|.+||.|..|.+.+.-. .....+ + .||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999988877666 2 67899999999987754321 011112 2 38999999999999999999999999
Q ss_pred EEEEEEecC
Q 008795 77 QLRVDFAEN 85 (553)
Q Consensus 77 ~LrV~~A~~ 85 (553)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998764
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0022 Score=70.38 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=60.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 67 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs-~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~ 67 (553)
++.+|||||+||.-++.++|..+|+ -||.|+.+-|-.|.+-+.+||-|-|+|.+.....+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4689999999999999999999998 699999999999988899999999999999999999873
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.88 E-value=0.002 Score=71.35 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=55.5
Q ss_pred HHHHHHhccCCeeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCC
Q 008795 22 QLIEICREVGPVVSFRLVIDR---ETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG 88 (553)
Q Consensus 22 dLre~Fs~fG~V~~vrLv~Dr---~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~~~ 88 (553)
+++.-+.+||.|..|.+.++. +-.-..|..||||.+.++|++|.+.|+|.++.||.+.+.|..+++.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 455556789999999998772 2233457789999999999999999999999999999999887654
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0038 Score=68.65 Aligned_cols=63 Identities=32% Similarity=0.455 Sum_probs=47.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEee-cC--CCCCcce---EEEEEeCCHHHHHHHHHHhC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVI-DR--ETGKPKG---YGFCEYKDEETALSARRNLQ 69 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~-Dr--~TGksKG---yAFVeF~d~e~A~~AI~~Ln 69 (553)
+++||||+||++++|++|...|..||.+. +.+.. .. .---++| |+|+.|+++..+..-+..+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 68999999999999999999999999763 22221 11 1113467 99999999999887766543
No 108
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.69 E-value=0.012 Score=57.64 Aligned_cols=61 Identities=28% Similarity=0.336 Sum_probs=55.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I 73 (553)
..+|.|.+||...++.+|+++..+.|.|....+.+| |++.|+|...|+.+-|+++|....+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 567999999999999999999999999999988876 5899999999999999999987655
No 109
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.59 E-value=0.0074 Score=63.72 Aligned_cols=78 Identities=24% Similarity=0.440 Sum_probs=63.7
Q ss_pred CCcEEEEecCC----CCCC-------HHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008795 5 QHRCVFVGNIP----YDAT-------EEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (553)
Q Consensus 5 ~srtVFVGNLP----~dvT-------EedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I 73 (553)
..++|.+.|+= ++.+ +++|++-+++||.|.+|.| +| ..+.|.+-|.|.+.++|..||+.|+|..|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv-~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV-YD---RHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE-ec---cCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 35788888873 3344 3566777899999999875 44 35789999999999999999999999999
Q ss_pred CCEEEEEEEecCC
Q 008795 74 NGRQLRVDFAEND 86 (553)
Q Consensus 74 ~GR~LrV~~A~~~ 86 (553)
+||.|........
T Consensus 340 dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 340 DGRQLTASIWDGK 352 (382)
T ss_pred cceEEEEEEeCCc
Confidence 9999998887654
No 110
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.57 E-value=0.0018 Score=65.85 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=60.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHHHhCCcee
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRET--------GKPKG----YGFCEYKDEETALSARRNLQGYEI 73 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~T--------GksKG----yAFVeF~d~e~A~~AI~~Lng~~I 73 (553)
.-+||+++||..++-.-|+++|+.||.|-.|.|-....+ |..++ -|+|||.+...|+++...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999998887655443 33333 467999999999999999999999
Q ss_pred CCEE
Q 008795 74 NGRQ 77 (553)
Q Consensus 74 ~GR~ 77 (553)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.51 E-value=0.003 Score=67.37 Aligned_cols=80 Identities=21% Similarity=0.433 Sum_probs=68.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCC-eeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGP-VVS--FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~-V~~--vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+|.+++|||+++.|+|-+||..|-. |.. |.++.+ ..|++.|-|||+|.+.+.|..|....+++..++|.|+|.-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 578999999999999999999999875 333 566766 4599999999999999999999988888777899999988
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+..+
T Consensus 359 ~S~e 362 (508)
T KOG1365|consen 359 CSVE 362 (508)
T ss_pred ccHH
Confidence 7643
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.42 E-value=0.035 Score=59.38 Aligned_cols=77 Identities=25% Similarity=0.461 Sum_probs=62.7
Q ss_pred CcEEEEe--cCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-C-EEEEEE
Q 008795 6 HRCVFVG--NIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-G-RQLRVD 81 (553)
Q Consensus 6 srtVFVG--NLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~-G-R~LrV~ 81 (553)
++.|.+. |-=|.+|-+-|+.++...|+|.+|.|.+. +| --|.|||++.+.|++|...|||..|. | ..|+|+
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 4444444 55678999999999999999999988753 33 36899999999999999999999884 3 579999
Q ss_pred EecCCC
Q 008795 82 FAENDK 87 (553)
Q Consensus 82 ~A~~~~ 87 (553)
||++.+
T Consensus 195 yAkP~r 200 (494)
T KOG1456|consen 195 YAKPTR 200 (494)
T ss_pred ecCcce
Confidence 999754
No 113
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.37 E-value=0.0078 Score=47.29 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=41.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 65 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI 65 (553)
+.|-|.+.+.+..++ +..+|..||+|+++.+- ..+-+.||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 568888998877654 55588899999998875 22458899999999999985
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.32 E-value=0.008 Score=64.64 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=64.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR-QLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR-~LrV~~ 82 (553)
+++.++.+.|||.+++||+|+..|..-|..++....+ ++.+-++.+.+.+.|+|..|+-.++.+.+++. .|||.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 4677899999999999999999999887765543332 34467999999999999999999999988755 799999
Q ss_pred ecC
Q 008795 83 AEN 85 (553)
Q Consensus 83 A~~ 85 (553)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 874
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.20 E-value=0.021 Score=60.97 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~d-vTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
.+++.+.|-+|... +.-+.|..+|+.||.|.+|++++.+ .|.|.||..|....++|+..||+..+-|.+|.|..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 35788899999876 5557799999999999999999875 58899999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
++-.
T Consensus 360 SkQ~ 363 (494)
T KOG1456|consen 360 SKQN 363 (494)
T ss_pred cccc
Confidence 8754
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.05 E-value=0.004 Score=71.75 Aligned_cols=79 Identities=27% Similarity=0.377 Sum_probs=68.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
...|||.|.|+..|.++++.+|.++|.+.+.+++..+ .|++||.+||.|.++.++.+++...+...+.-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4578999999999999999999999999999988775 599999999999999999999877666666666667777665
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.02 E-value=0.038 Score=52.34 Aligned_cols=56 Identities=32% Similarity=0.563 Sum_probs=45.0
Q ss_pred HHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 22 QLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 22 dLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
+|-+.|..||.|+-+|++.+ .-+|+|.+-+.|.+|+. ++|.+|+|+.|+|+...++
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 56777889999999988743 46999999999999996 8999999999999997754
No 118
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.91 E-value=0.021 Score=59.27 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=54.5
Q ss_pred HHHHHHHHhccCCeeEEEEeecCCCCCcce-EEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 20 EEQLIEICREVGPVVSFRLVIDRETGKPKG-YGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 20 EedLre~Fs~fG~V~~vrLv~Dr~TGksKG-yAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
|+++++-+++||.|..|.|..++.--.... --||+|...++|.+|+-.|||..|+||.++..|....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 457888899999999998887753222222 3599999999999999999999999999988887643
No 119
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.90 E-value=0.0075 Score=67.34 Aligned_cols=76 Identities=28% Similarity=0.350 Sum_probs=64.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI---NGRQLRV 80 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs-~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I---~GR~LrV 80 (553)
.++.|||.||=.-.|.-+|+.++. .+|.|+++ ..| +-|..|||.|.+.++|...+..|||..| +++.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 578999999999999999999998 56666666 444 3477899999999999999999999887 6788999
Q ss_pred EEecCC
Q 008795 81 DFAEND 86 (553)
Q Consensus 81 ~~A~~~ 86 (553)
.|....
T Consensus 517 df~~~d 522 (718)
T KOG2416|consen 517 DFVRAD 522 (718)
T ss_pred eecchh
Confidence 998754
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.89 E-value=0.017 Score=61.78 Aligned_cols=76 Identities=26% Similarity=0.349 Sum_probs=57.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhc---c-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 7 RCVFVGNIPYDATEEQLIEICRE---V-GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~---f-G~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
-.|..++||+++++.++.+||.. . |.++.+-++.. -.|+..|-|||.|..+++|+.|+++ |...|+-|.|++..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 35667899999999999999952 2 34556655554 3699999999999999999999975 44456666666555
Q ss_pred ec
Q 008795 83 AE 84 (553)
Q Consensus 83 A~ 84 (553)
++
T Consensus 240 ST 241 (508)
T KOG1365|consen 240 ST 241 (508)
T ss_pred Hh
Confidence 44
No 121
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.42 E-value=0.063 Score=47.80 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=51.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEE-EeecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFR-LVIDR------ETGKPKGYGFCEYKDEETALSARRNLQGYEINGR- 76 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vr-Lv~Dr------~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR- 76 (553)
.++.|.|-+.|... ...|-+.|++||.|++.. +.++. ..-....+-.|.|++..+|.+|++ .||..|+|.
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45678888999885 466777899999998764 11110 001124578899999999999997 599999875
Q ss_pred EEEEEEec
Q 008795 77 QLRVDFAE 84 (553)
Q Consensus 77 ~LrV~~A~ 84 (553)
.+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 46677774
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.28 E-value=0.011 Score=67.14 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=67.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~-vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..+|||..||..+++.++.++|...-.|++ |.|-+- -|++.++.|||+|..++++.+|...-+.+.++.|.|+|+-..
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 578999999999999999999999888888 444444 478899999999999888888887667777888999998765
Q ss_pred C
Q 008795 85 N 85 (553)
Q Consensus 85 ~ 85 (553)
+
T Consensus 513 ~ 513 (944)
T KOG4307|consen 513 D 513 (944)
T ss_pred h
Confidence 4
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.69 E-value=0.02 Score=61.87 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=60.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCCEEEEEEEe
Q 008795 7 RCVFVGNIPYDATEEQLIEICREV--GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY-EINGRQLRVDFA 83 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~f--G~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~-~I~GR~LrV~~A 83 (553)
+++|+|||...++..+|+.+|... |.-..|- +. .||+||.+.|..-|.+|++.++|. ++.|+++.|++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-VK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-ee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 468999999999999999999753 2222222 21 589999999999999999999985 789999999998
Q ss_pred cCCCCc
Q 008795 84 ENDKGA 89 (553)
Q Consensus 84 ~~~~~~ 89 (553)
-.++.+
T Consensus 74 v~kkqr 79 (584)
T KOG2193|consen 74 VPKKQR 79 (584)
T ss_pred hhHHHH
Confidence 776543
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.46 E-value=0.018 Score=58.66 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=50.2
Q ss_pred HHHHHHh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 22 QLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 22 dLre~Fs-~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
+|...|+ +||+|+++.+... -.-.-+|-++|.|..+++|++|+..||+..+.|++|.+++..-
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3333344 8999999865433 3345588899999999999999999999999999999888653
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.25 E-value=0.0031 Score=72.60 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=59.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I 73 (553)
..++||.||+..+.+++|...|..+|.+..+++.....+++.+|+||++|.+.+.+.+||....+..+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 46789999999999999999999999998888776778899999999999999999999976554333
No 126
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.78 E-value=0.29 Score=40.11 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=44.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhcc---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREV---GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~f---G~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~L 68 (553)
-.+|+|.++. +.+.++|+.+|..| .....|+++-|. -|-|.|.|.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4679999985 47778999999998 235688888774 4789999999999999764
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.50 E-value=0.079 Score=61.89 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=67.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING--RQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G--R~LrV~~ 82 (553)
..+.+|+|+|..++....|...|..||.|..|.+-. ..-|++|.|.+...+..|++.+.|..|+| +.|+|.|
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 568899999999999999999999999999876532 24599999999999999999999999975 6699999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+....
T Consensus 528 a~~~~ 532 (975)
T KOG0112|consen 528 ASPPG 532 (975)
T ss_pred ccCCC
Confidence 98643
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.46 E-value=0.087 Score=53.94 Aligned_cols=77 Identities=26% Similarity=0.379 Sum_probs=63.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC----ceeCCEEEEEEE
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG----YEINGRQLRVDF 82 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng----~~I~GR~LrV~~ 82 (553)
..|||.||...+.-|.++.-|+.||+|....++.| ..|+..+-++|+|...-.+.+|.+.+.- ....++..-|+-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 67999999999999999999999999988776666 4588899999999999999999987742 244566655555
Q ss_pred ec
Q 008795 83 AE 84 (553)
Q Consensus 83 A~ 84 (553)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.30 E-value=0.33 Score=42.13 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=43.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG 70 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng 70 (553)
.+...||+ +|.+|...||.++|+.||.| .|..+.| .-|||...+.+.|..++..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 45566666 99999999999999999986 5666655 3699999999999999988763
No 130
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.24 E-value=0.11 Score=57.90 Aligned_cols=68 Identities=15% Similarity=0.302 Sum_probs=54.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhc--cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICRE--VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG--YEINGRQLR 79 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~--fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng--~~I~GR~Lr 79 (553)
..|.|.++.||..+-+|+++.+|+. |-++.+|.+-.. .++ ||+|++..||+.|.+.|.. ++|.|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nW-yITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNW-YITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------Cce-EEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4577888999999999999999965 788888887543 334 8999999999999987753 356666653
No 131
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.11 E-value=0.046 Score=61.92 Aligned_cols=69 Identities=32% Similarity=0.475 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
+..+|||||+.+.+..+-++.++..||-|..++... ||||+|.+.....+|++.++...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 567899999999999999999999999998876542 999999999999999999998888888765554
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.02 E-value=0.031 Score=58.94 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHH-H--HHHHhccCCeeEEEEeecCC--CCCc-ceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 7 RCVFVGNIPYDATEEQ-L--IEICREVGPVVSFRLVIDRE--TGKP-KGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 7 rtVFVGNLP~dvTEed-L--re~Fs~fG~V~~vrLv~Dr~--TGks-KGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
+-+||-+|+.....++ | .+.|.+||.|..+.+..+.. .+.. ..-++|+|...++|..||..++|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4577878887765544 4 45789999999998887762 1111 123689999999999999999999999999888
Q ss_pred EEecCC
Q 008795 81 DFAEND 86 (553)
Q Consensus 81 ~~A~~~ 86 (553)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 887654
No 133
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.01 E-value=0.41 Score=39.62 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 17 DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 17 dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
.++-++++..++.|+- .+ |..|+ .|| ||.|.|.++|++|.+..++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999973 33 34454 567 89999999999999999998888777654
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.28 E-value=0.092 Score=54.76 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=69.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.+++|+|++.+.+.+++...++..+|.+..+.+.........+|++.+.|...+.+..|+.....+.+.++.+...+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 57899999999999999999999999999988888778899999999999999999999986665677777776666554
Q ss_pred C
Q 008795 86 D 86 (553)
Q Consensus 86 ~ 86 (553)
.
T Consensus 168 ~ 168 (285)
T KOG4210|consen 168 R 168 (285)
T ss_pred c
Confidence 3
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.94 E-value=0.23 Score=53.65 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=61.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRE---TGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~---TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...|.|.||...+|.++++.+|.-.|+|.+++|.-... -......|||.|.|...+..|-. |.+..|-++.|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 35899999999999999999999999999998865321 12234589999999999888875 566666667666655
Q ss_pred ecC
Q 008795 83 AEN 85 (553)
Q Consensus 83 A~~ 85 (553)
+-.
T Consensus 86 ~~~ 88 (479)
T KOG4676|consen 86 YGD 88 (479)
T ss_pred cCC
Confidence 443
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.87 E-value=0.05 Score=63.42 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++||+|||+..+++.+|+..|..+|.|.+|.|...+ -+.-..|+||.|.+.+-+-+|+-.+.+..|..-.+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 36899999999999999999999999999999987653 23344589999999999999998888887765566666654
No 137
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.54 E-value=0.43 Score=46.35 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=52.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhc-cCCe---eEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceeC---
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICRE-VGPV---VSFRLVIDRETGK--PKGYGFCEYKDEETALSARRNLQGYEIN--- 74 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~-fG~V---~~vrLv~Dr~TGk--sKGyAFVeF~d~e~A~~AI~~Lng~~I~--- 74 (553)
....+|.|++||+..||+++.+.++. ++.- ..+.-..+...-+ .-.-|||.|.+.+++..-++.++|+.+-
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 35678999999999999999886665 5554 3443222221111 1346899999999999999999998772
Q ss_pred C--EEEEEEEecCCC
Q 008795 75 G--RQLRVDFAENDK 87 (553)
Q Consensus 75 G--R~LrV~~A~~~~ 87 (553)
| ....|++|-..+
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 2 346888887643
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.89 E-value=0.62 Score=45.79 Aligned_cols=62 Identities=27% Similarity=0.347 Sum_probs=45.7
Q ss_pred CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEEEEecCC
Q 008795 19 TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQLRVDFAEND 86 (553)
Q Consensus 19 TEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Ln--g~~I~GR~LrV~~A~~~ 86 (553)
..+.|+++|..|+.+..+..+.. -+-..|.|.+.++|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 35789999999999998887743 3346899999999999999999 89999999999999543
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.05 E-value=2.3 Score=38.59 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=49.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING 75 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G 75 (553)
..+.+...|+-++-++|..+.+.+- .|..++|++|. ..++--+.++|++.+.|..-.+.+||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444556666777777876666553 57788998873 2356667899999999999999999987753
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=89.96 E-value=0.44 Score=53.35 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=57.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCE-EEEEE
Q 008795 7 RCVFVGNIPYDATEEQLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI---NGR-QLRVD 81 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs-~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I---~GR-~LrV~ 81 (553)
+++-|.|++...|..-|.+.-+ ..|.-..+.+..|..+....|||||.|.+.+.+.++.+.+||+.+ +++ .+++.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 3445555555555444433322 256667778888988999999999999999999999999999755 444 46888
Q ss_pred EecCC
Q 008795 82 FAEND 86 (553)
Q Consensus 82 ~A~~~ 86 (553)
||+-.
T Consensus 469 YArIQ 473 (549)
T KOG4660|consen 469 YARIQ 473 (549)
T ss_pred hhhhh
Confidence 88753
No 141
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.44 E-value=0.36 Score=53.23 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=56.5
Q ss_pred cEEEEecCCCCC-CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 7 RCVFVGNIPYDA-TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 7 rtVFVGNLP~dv-TEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
+.+-+.-+++.. |-++|..+|.+||+|..|.+-+. .-.|.|+|.+..+|-+|.+ .++..|++|.|+|.|-..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 334444445554 45789999999999999987654 2368999999999988875 688999999999999876
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.32 E-value=2.3 Score=40.58 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=52.4
Q ss_pred CCcEEEEecCCCCCCH-HH---HHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 5 QHRCVFVGNIPYDATE-EQ---LIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 5 ~srtVFVGNLP~dvTE-ed---Lre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
+-.+|.|+=|..++.. || +...++.||+|.+|.+. | +--|.|.|+|..+|=+|+..++. ..-|..+.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 3456777655555432 34 44556789999999875 2 34689999999999999998876 566778888
Q ss_pred EEec
Q 008795 81 DFAE 84 (553)
Q Consensus 81 ~~A~ 84 (553)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8854
No 143
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.15 E-value=5.3 Score=33.14 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHhccCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 16 YDATEEQLIEICREVGP-----VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 16 ~dvTEedLre~Fs~fG~-----V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
..++..+|..++...+. |-.+++.. .|+||+-.. +.++.+++.|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788888888877654 44566652 388998864 5788999999999999999999875
No 144
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.86 E-value=8.4 Score=40.78 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=53.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE-EEEEEec
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ-LRVDFAE 84 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~-LrV~~A~ 84 (553)
+..|-|-+++..... -|-.+|++||.|++... +..-.+-+|.|.+.-+|++||. .+|..|+|-. |-|+.+.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 456667778776654 45567999999987643 3334488999999999999995 6888888765 5666655
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
.+
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 44
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=79.73 E-value=0.25 Score=53.80 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLV-IDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv-~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.++++-|.|||....++-|..++..||.|..|..+ .|.+ ....-|+|...+.++-|+..|+|..+....++|.|.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 35778899999999999999999999999999654 3333 333457899999999999999999999999999997
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
....
T Consensus 155 Pdeq 158 (584)
T KOG2193|consen 155 PDEQ 158 (584)
T ss_pred chhh
Confidence 6543
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.28 E-value=8.1 Score=42.82 Aligned_cols=67 Identities=19% Similarity=0.387 Sum_probs=56.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhcc-CCeeEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREV-GPVVSFRLVIDRETGKP-KGYGFCEYKDEETALSARRNLQGYEING 75 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~f-G~V~~vrLv~Dr~TGks-KGyAFVeF~d~e~A~~AI~~Lng~~I~G 75 (553)
+..|+|-.+|-.++-.||-.|+..| -.|.++++++| |.+ +-...|.|++.++|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7789999999999999999998765 46889999986 334 3346899999999999999999987754
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=74.94 E-value=1.8 Score=50.86 Aligned_cols=71 Identities=28% Similarity=0.391 Sum_probs=59.5
Q ss_pred EEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--CCEEEEEEEecCC
Q 008795 10 FVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI--NGRQLRVDFAEND 86 (553)
Q Consensus 10 FVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I--~GR~LrV~~A~~~ 86 (553)
++-|..-..+...|..+|++||.|.+.+..+|- ..+.|+|...+.|-.|++.|+|+++ .|-+.+|.+|+.-
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 444556667888899999999999999887763 4789999999999999999999876 6778999999864
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.33 E-value=14 Score=42.23 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=61.4
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHhcc----CCeeEEEEeecC----------CCCC----------------------
Q 008795 4 SQHRCVFVGNIPYD-ATEEQLIEICREV----GPVVSFRLVIDR----------ETGK---------------------- 46 (553)
Q Consensus 4 ~~srtVFVGNLP~d-vTEedLre~Fs~f----G~V~~vrLv~Dr----------~TGk---------------------- 46 (553)
...++|-|.|+.|+ +..++|.-+|..| |.|.+|.|.... .+|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 46789999999997 6678999998876 688888875311 1222
Q ss_pred --------------c-ceEEEEEeCCHHHHHHHHHHhCCceeC--CEEEEEEEecC
Q 008795 47 --------------P-KGYGFCEYKDEETALSARRNLQGYEIN--GRQLRVDFAEN 85 (553)
Q Consensus 47 --------------s-KGyAFVeF~d~e~A~~AI~~Lng~~I~--GR~LrV~~A~~ 85 (553)
. --||.|+|.+.++|...++.++|.++. +-.+.++|.-.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 1 137899999999999999999999885 45566666543
No 149
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=73.46 E-value=21 Score=41.26 Aligned_cols=62 Identities=6% Similarity=0.111 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHhccCCee-----EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 15 PYDATEEQLIEICREVGPVV-----SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 15 P~dvTEedLre~Fs~fG~V~-----~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
-..++..+|-.++..-+.|. .|+|. ..|.||+.. .+.+...++.|++..+.|+.|.|+.+..
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEEEECCC
Confidence 34577778877776655443 34544 237899986 4558889999999999999999998853
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.95 E-value=9.9 Score=40.00 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=40.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCe-eEEEEeecCCCCCcceEEEEEeCCH-------HHHHHHHHHh
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPV-VSFRLVIDRETGKPKGYGFCEYKDE-------ETALSARRNL 68 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V-~~vrLv~Dr~TGksKGyAFVeF~d~-------e~A~~AI~~L 68 (553)
.-||++||+.++.-.+|+..+++.|.+ .++.+. .+.|-||..|.+. +++.++++.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 459999999999999999999988754 333332 2367789999775 4455555443
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=55.05 E-value=2.5 Score=42.94 Aligned_cols=68 Identities=29% Similarity=0.511 Sum_probs=57.2
Q ss_pred CCcEEEEec----CCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008795 5 QHRCVFVGN----IPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (553)
Q Consensus 5 ~srtVFVGN----LP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I 73 (553)
...+++.|+ |...++++.++++|+.-|.+..+++-.+.+ |+++.++|+.|.-....-.+++.+.+...
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 356788888 888999999999999999999999998876 88999999999877777777777665544
No 152
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=54.80 E-value=13 Score=35.10 Aligned_cols=59 Identities=25% Similarity=0.476 Sum_probs=42.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~ 62 (553)
.....+++++++..++++++...|..+|.+....+...........+.++.+.....+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDAL 281 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhh
Confidence 35678999999999999999999999999977777665444444444444443333333
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=54.79 E-value=1.8 Score=47.01 Aligned_cols=63 Identities=16% Similarity=0.073 Sum_probs=50.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~ 74 (553)
++++|++|..+|...++-+.|..+|+|.+.++- .|-..-||-++|........|++. +|.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 679999999999999999999999999887764 344566888999988888888764 454443
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.94 E-value=20 Score=32.68 Aligned_cols=56 Identities=20% Similarity=0.407 Sum_probs=31.2
Q ss_pred EEEEecCCCCC---------CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCH-HHHHHHHH
Q 008795 8 CVFVGNIPYDA---------TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDE-ETALSARR 66 (553)
Q Consensus 8 tVFVGNLP~dv---------TEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~-e~A~~AI~ 66 (553)
++.|-|++.+. +.++|++.|+.|..++ ++.+.++. .+.|+++|+|... .-...|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 35566776543 4578999999998875 55566653 5689999999854 44555654
No 155
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=43.76 E-value=20 Score=35.45 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=55.3
Q ss_pred cEEEEecCCCCCCHH-----HHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EEEE
Q 008795 7 RCVFVGNIPYDATEE-----QLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR-QLRV 80 (553)
Q Consensus 7 rtVFVGNLP~dvTEe-----dLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR-~LrV 80 (553)
.++++.+|..++..+ ..+.+|..|-+...+++++. .+..-|.|.+.+.|.+|...+++..|.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 457777777664432 34566777777766666532 45567899999999999999999999988 7888
Q ss_pred EEecCCC
Q 008795 81 DFAENDK 87 (553)
Q Consensus 81 ~~A~~~~ 87 (553)
-++....
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8887543
No 156
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=42.36 E-value=38 Score=28.52 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=43.6
Q ss_pred HHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 21 EQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 21 edLre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
++|++-|.+.| .+..++.+..++++.+-..-||+.....+... .|+=..|+|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 67888888877777777777888875543333 234446789988887754
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.85 E-value=51 Score=34.97 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=60.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHH----HhCC--c
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDR-------ETGKPKGYGFCEYKDEETALSARR----NLQG--Y 71 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr-------~TGksKGyAFVeF~d~e~A~~AI~----~Lng--~ 71 (553)
..|.|.+.|+..+++-..+-..|.+||+|++|.++.+. +..+......+.|-+.+.|..-.. .|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999988888889999999999998765 123444677899999998776432 3332 2
Q ss_pred eeCCEEEEEEEecC
Q 008795 72 EINGRQLRVDFAEN 85 (553)
Q Consensus 72 ~I~GR~LrV~~A~~ 85 (553)
.++...|++.|..-
T Consensus 94 ~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 94 KLKSESLTLSFVSL 107 (309)
T ss_pred hcCCcceeEEEEEE
Confidence 56777788888763
No 158
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.53 E-value=56 Score=27.11 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=43.9
Q ss_pred HHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 21 EQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 21 edLre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
++|++-|...| .|.++.-+..+.++++--.-||+.....+..++ |+=..|++..++|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 56777787777 677887777776777777889998765543333 333467888888887653
No 159
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.32 E-value=63 Score=35.71 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=44.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGP-VVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~-V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~ 66 (553)
..+|-|-++|.+...++|-..|+.|+. --+|+++-|. .+|..|.+...|..|+-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 457888999999999999999999974 4567777653 78999999999999985
No 160
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=36.66 E-value=77 Score=23.55 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHhCC-CHHHHH
Q 008795 182 EIMSEMKLMATQNKEQARQLLLAKP-PLLKAL 212 (553)
Q Consensus 182 eiLs~LK~l~~~~P~~Ar~LL~~nP-QLa~AL 212 (553)
++|.++..+...+++.|+.+|..+- +|-.|+
T Consensus 2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av 33 (43)
T PF14555_consen 2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAV 33 (43)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHH
Confidence 6788888888899999999999987 666665
No 161
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.64 E-value=5.6 Score=45.00 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=54.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~ 74 (553)
.+++|+.||..+++-++|..+|+.+-.+..+.+..+..-.+.+.+++|.|.-.-....||.+||++.+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 467899999999999999999999877777766544333445667899998777788888888876554
No 162
>PF14893 PNMA: PNMA
Probab=36.18 E-value=37 Score=36.50 Aligned_cols=56 Identities=23% Similarity=0.472 Sum_probs=36.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHHhc-cCCeeEEEEe---ecCCCCCcceEEEEEeCCH
Q 008795 1 MASSQHRCVFVGNIPYDATEEQLIEICRE-VGPVVSFRLV---IDRETGKPKGYGFCEYKDE 58 (553)
Q Consensus 1 mas~~srtVFVGNLP~dvTEedLre~Fs~-fG~V~~vrLv---~Dr~TGksKGyAFVeF~d~ 58 (553)
|.-+..+.+.|.+||.+++|++|++.+.. .-.+-.+++. +.++.+ .--++|||...
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~ 72 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAED 72 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccc
Confidence 44566789999999999999999988764 3233233332 222211 33678888643
No 163
>PRK11901 hypothetical protein; Reviewed
Probab=33.03 E-value=1.3e+02 Score=32.50 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEE--EEeCCHHHHHHHHHHhCC
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGF--CEYKDEETALSARRNLQG 70 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAF--VeF~d~e~A~~AI~~Lng 70 (553)
...+|-|.. -.+++.|+.|.++.+ +..+++..-...|+. .|.. -+|.+.++|+.|++.|-.
T Consensus 244 ~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 345555544 356888999988876 455555554445554 3443 378999999999998853
No 164
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.31 E-value=4.7e+02 Score=31.74 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=19.7
Q ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHh
Q 008795 174 KMSRNQLNEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIML 219 (553)
Q Consensus 174 ~l~p~QL~eiLs~LK~l~~~~P~~Ar~LL~~nPQLa~AL~QA~llL 219 (553)
.++..+|++.+-. |..+...-+.|..+-...-+.-.|--.++..|
T Consensus 453 ~id~~~liD~~vd-kak~eeseqkA~e~~kk~~ke~ta~qe~qael 497 (1102)
T KOG1924|consen 453 DIDLTELIDKMVD-KAKAEESEQKAAELEKKFDKELTARQEAQAEL 497 (1102)
T ss_pred cCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3555666665532 22233334345444444333444443343333
No 165
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=27.65 E-value=1.1e+02 Score=22.69 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=25.6
Q ss_pred hhhHHhhcCChHHHHHHHHHHHHHHhhCHHHHHHHHHh
Q 008795 167 PLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQLLLA 204 (553)
Q Consensus 167 ~IS~~La~l~p~QL~eiLs~LK~l~~~~P~~Ar~LL~~ 204 (553)
++.+-|..|+.+||..+|. .+|..+|+-+..+-..
T Consensus 2 pl~RlLE~Ld~~qL~~lL~---~l~~~HPei~~~i~~~ 36 (38)
T PF14483_consen 2 PLPRLLETLDKDQLQSLLQ---SLCERHPEIQQEIRSI 36 (38)
T ss_dssp -HHHHHTTS-HHHHHHHHH---HHHHHSTHHHHHHHTT
T ss_pred ChhHHHHHcCHHHHHHHHH---HHHHhChhHHHHHHhh
Confidence 4677889999999999874 4566888888776554
No 166
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=25.74 E-value=1.2e+02 Score=30.30 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=40.1
Q ss_pred CCCHHHHHHHH---hccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008795 17 DATEEQLIEIC---REVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (553)
Q Consensus 17 dvTEedLre~F---s~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~ 74 (553)
++++++|++|- ..|| +.+.++.|+.++-.+-+.|+.=.|.+....|++.+....+.
T Consensus 38 ~i~~~~lk~F~k~AkKyG--V~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~ 96 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYG--VDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLK 96 (204)
T ss_pred ecCHhhHHHHHHHHHHcC--CceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 56677776654 5688 45556788877776667777777889999999887665443
No 167
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=24.97 E-value=1.4e+02 Score=24.81 Aligned_cols=18 Identities=6% Similarity=0.327 Sum_probs=14.4
Q ss_pred HHHHHHHhccCCeeEEEE
Q 008795 21 EQLIEICREVGPVVSFRL 38 (553)
Q Consensus 21 edLre~Fs~fG~V~~vrL 38 (553)
.+||++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999865543
No 168
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=24.22 E-value=2.1e+02 Score=31.92 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=26.9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeC--CEEEEEEEec
Q 008795 50 YGFCEYKDEETALSARRNLQGYEIN--GRQLRVDFAE 84 (553)
Q Consensus 50 yAFVeF~d~e~A~~AI~~Lng~~I~--GR~LrV~~A~ 84 (553)
||.|+|.+.++++....+++|.++. +..+.+.|..
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 7889999999999999999998774 3345555543
No 169
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.88 E-value=1.9e+02 Score=25.94 Aligned_cols=20 Identities=55% Similarity=0.903 Sum_probs=12.3
Q ss_pred HHhcCHHH----------hhcCChHHHHHH
Q 008795 519 VLSLTPEQ----------LNSLPPEQRQQV 538 (553)
Q Consensus 519 vl~lt~~q----------~~~lp~~~~~~~ 538 (553)
--+||||| ++.|||++|..|
T Consensus 56 W~~LspeqR~~~R~~~~~~~~Lpp~qR~~l 85 (107)
T PF11304_consen 56 WAALSPEQRQQARENYQRFKQLPPEQRQAL 85 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566664 346777777743
No 170
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.80 E-value=81 Score=32.71 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=26.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 008795 51 GFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDK 87 (553)
Q Consensus 51 AFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~~ 87 (553)
|||+|++.++|..|++.+... +++.++++.|-+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcc
Confidence 699999999999999976543 33556777776543
No 171
>PRK10905 cell division protein DamX; Validated
Probab=21.43 E-value=2.2e+02 Score=30.66 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=39.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEE--EEEeCCHHHHHHHHHHhC
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYG--FCEYKDEETALSARRNLQ 69 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyA--FVeF~d~e~A~~AI~~Ln 69 (553)
..++|-|+.+ .+++.|++|..+.| +....+......|+.. |. +=.|.+.++|++|++.|-
T Consensus 246 ~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 3456666554 45688888888875 3444444444445532 33 337899999999999875
No 172
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=15 Score=40.80 Aligned_cols=79 Identities=6% Similarity=-0.179 Sum_probs=61.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
.+.|+..++...+++++.-.|..||-|..+.+......|..+-.+|+.-.. .++..||..+....+.|..+++..+...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 456778899999999999999999999888776655556667778887654 4466777777767788888888888653
No 173
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.05 E-value=84 Score=33.24 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=31.4
Q ss_pred CcEEEEecCCCC------------CCHHHHHHHHhccCCeeEEEEe-ec----CCCCCcce
Q 008795 6 HRCVFVGNIPYD------------ATEEQLIEICREVGPVVSFRLV-ID----RETGKPKG 49 (553)
Q Consensus 6 srtVFVGNLP~d------------vTEedLre~Fs~fG~V~~vrLv-~D----r~TGksKG 49 (553)
..+||+.+||.. -+|+.|+..|+.||.|..|.|. +| .-||+..|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisg 209 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISG 209 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCcccc
Confidence 467888888753 3567899999999999888764 23 24566544
Done!