Query 008795
Match_columns 553
No_of_seqs 352 out of 1748
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eba_G RNA15, KLLA0F09383P; HA 99.9 1.3E-23 4.5E-28 199.1 5.1 81 152-232 29-111 (174)
2 4fxv_A ELAV-like protein 1; RN 99.8 2.7E-20 9.1E-25 159.9 12.4 81 5-85 18-98 (99)
3 1u6f_A Tcubp1, RNA-binding pro 99.8 6.1E-20 2.1E-24 164.6 13.8 85 4-88 40-124 (139)
4 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.2E-19 7.6E-24 164.4 13.7 85 4-88 37-121 (156)
5 3s8s_A Histone-lysine N-methyl 99.8 2.8E-19 9.4E-24 156.7 12.8 84 3-86 3-86 (110)
6 1x5t_A Splicing factor 3B subu 99.8 2.6E-19 8.8E-24 150.3 11.4 85 3-87 2-87 (96)
7 2dnz_A Probable RNA-binding pr 99.8 3.3E-19 1.1E-23 149.4 12.0 85 3-87 2-86 (95)
8 2lxi_A RNA-binding protein 10; 99.8 7.9E-20 2.7E-24 154.3 8.1 83 6-88 1-85 (91)
9 2cpz_A CUG triplet repeat RNA- 99.8 4.6E-19 1.6E-23 154.2 12.6 84 4-87 23-106 (115)
10 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-18 4.7E-23 151.0 15.4 87 3-89 12-98 (115)
11 1whw_A Hypothetical protein ri 99.8 5.9E-19 2E-23 149.2 12.7 86 3-88 5-90 (99)
12 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.9E-19 2E-23 145.3 12.2 83 4-86 4-86 (87)
13 2cqd_A RNA-binding region cont 99.8 8.6E-19 2.9E-23 152.7 13.8 84 3-87 14-97 (116)
14 2dgs_A DAZ-associated protein 99.8 5.1E-19 1.8E-23 149.8 11.8 85 3-88 7-91 (99)
15 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.9E-19 1.3E-23 151.1 10.8 85 4-88 10-94 (102)
16 2fy1_A RNA-binding motif prote 99.8 6.8E-19 2.3E-23 154.9 12.4 86 1-87 2-87 (116)
17 1x5s_A Cold-inducible RNA-bind 99.8 4.6E-19 1.6E-23 150.6 10.8 85 3-87 9-93 (102)
18 2cq0_A Eukaryotic translation 99.8 7.8E-19 2.7E-23 149.7 12.2 85 3-87 12-96 (103)
19 2cpf_A RNA binding motif prote 99.8 7.8E-19 2.7E-23 148.2 12.1 85 3-87 2-89 (98)
20 3md1_A Nuclear and cytoplasmic 99.8 1.1E-18 3.8E-23 142.4 12.6 81 6-86 1-81 (83)
21 1x4h_A RNA-binding protein 28; 99.8 7.8E-19 2.7E-23 151.1 12.1 85 4-88 13-103 (111)
22 1x5u_A Splicing factor 3B subu 99.8 6E-19 2.1E-23 150.7 11.2 85 3-87 12-96 (105)
23 2dnm_A SRP46 splicing factor; 99.8 4.5E-19 1.5E-23 151.2 10.3 85 4-88 11-95 (103)
24 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.9E-19 3.1E-23 143.6 11.4 82 3-84 4-85 (85)
25 2x1f_A MRNA 3'-END-processing 99.8 1E-18 3.5E-23 147.4 11.8 83 5-87 1-83 (96)
26 2dng_A Eukaryotic translation 99.8 1.7E-18 5.8E-23 147.8 13.1 83 3-87 12-94 (103)
27 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-18 4.1E-23 149.0 11.8 84 3-88 12-96 (104)
28 2cqc_A Arginine/serine-rich sp 99.8 1.4E-18 4.8E-23 145.3 11.9 82 4-85 13-94 (95)
29 2dgp_A Bruno-like 4, RNA bindi 99.8 8.8E-19 3E-23 149.9 10.6 85 3-87 10-97 (106)
30 3ex7_B RNA-binding protein 8A; 99.8 6.5E-19 2.2E-23 155.4 10.0 85 4-88 20-104 (126)
31 2cph_A RNA binding motif prote 99.8 1.3E-18 4.4E-23 148.8 11.3 85 4-88 13-99 (107)
32 2div_A TRNA selenocysteine ass 99.8 1.2E-18 4E-23 147.4 10.6 86 2-87 5-95 (99)
33 2cpe_A RNA-binding protein EWS 99.8 1.7E-18 5.8E-23 150.0 11.6 85 3-87 12-104 (113)
34 2do0_A HnRNP M, heterogeneous 99.8 5.5E-18 1.9E-22 146.7 14.7 84 3-87 12-95 (114)
35 2do4_A Squamous cell carcinoma 99.8 2.4E-18 8.1E-23 145.9 12.1 83 4-87 15-97 (100)
36 2e5h_A Zinc finger CCHC-type a 99.8 1.7E-18 5.8E-23 144.8 11.0 81 4-84 14-94 (94)
37 2dhg_A TRNA selenocysteine ass 99.8 1.4E-18 4.7E-23 148.2 10.5 85 3-88 6-92 (104)
38 2khc_A Testis-specific RNP-typ 99.8 1.1E-18 3.8E-23 152.2 9.9 82 3-84 37-118 (118)
39 2lkz_A RNA-binding protein 5; 99.8 7.3E-19 2.5E-23 150.8 8.5 81 5-85 8-94 (95)
40 1oo0_B CG8781-PA, drosophila Y 99.8 2.5E-18 8.6E-23 148.2 11.7 84 4-87 24-107 (110)
41 3p5t_L Cleavage and polyadenyl 99.8 3.5E-19 1.2E-23 149.0 6.1 81 7-87 2-84 (90)
42 1p27_B RNA-binding protein 8A; 99.8 2.1E-18 7.2E-23 147.5 11.0 83 4-86 21-103 (106)
43 2d9p_A Polyadenylate-binding p 99.8 2.3E-18 7.7E-23 146.8 11.0 83 3-87 12-94 (103)
44 2cqg_A TDP-43, TAR DNA-binding 99.8 6.3E-18 2.1E-22 144.1 13.7 84 3-88 12-95 (103)
45 2cqi_A Nucleolysin TIAR; RNA r 99.8 7E-18 2.4E-22 143.8 13.8 83 3-87 12-94 (103)
46 4a8x_A RNA-binding protein wit 99.8 3E-18 1E-22 141.1 11.0 84 4-87 2-86 (88)
47 2dnh_A Bruno-like 5, RNA bindi 99.8 4E-18 1.4E-22 145.6 11.9 84 4-88 13-99 (105)
48 2dh8_A DAZ-associated protein 99.8 2.2E-18 7.6E-23 147.4 10.3 84 3-87 13-96 (105)
49 2la6_A RNA-binding protein FUS 99.8 2.3E-18 7.7E-23 146.1 10.3 81 4-84 11-99 (99)
50 4f25_A Polyadenylate-binding p 99.8 4E-18 1.4E-22 149.4 12.0 81 5-87 4-84 (115)
51 1p1t_A Cleavage stimulation fa 99.8 5.5E-19 1.9E-23 150.4 6.2 85 5-89 7-91 (104)
52 2ywk_A Putative RNA-binding pr 99.8 4.7E-18 1.6E-22 142.3 11.7 82 3-85 13-94 (95)
53 3s7r_A Heterogeneous nuclear r 99.8 6.2E-18 2.1E-22 139.7 11.9 80 3-83 8-87 (87)
54 3ucg_A Polyadenylate-binding p 99.8 6E-18 2.1E-22 139.8 11.7 81 5-86 5-85 (89)
55 1x4b_A Heterogeneous nuclear r 99.8 4.3E-18 1.5E-22 148.3 11.3 81 6-87 27-107 (116)
56 3ns6_A Eukaryotic translation 99.7 8.7E-19 3E-23 150.0 6.7 83 4-86 4-93 (100)
57 2jwn_A Embryonic polyadenylate 99.7 6.4E-18 2.2E-22 148.6 12.4 81 6-87 36-116 (124)
58 2m2b_A RNA-binding protein 10; 99.7 8.4E-19 2.9E-23 156.8 6.8 84 3-87 20-109 (131)
59 3n9u_C Cleavage and polyadenyl 99.7 4.7E-18 1.6E-22 157.8 12.1 82 5-86 54-137 (156)
60 3q2s_C Cleavage and polyadenyl 99.7 1.5E-18 5.2E-23 170.4 9.1 81 5-85 67-149 (229)
61 3ulh_A THO complex subunit 4; 99.7 9.4E-18 3.2E-22 143.7 12.8 80 4-84 27-106 (107)
62 1x4a_A Splicing factor, argini 99.7 9.8E-18 3.4E-22 144.5 13.0 82 3-87 19-100 (109)
63 2dis_A Unnamed protein product 99.7 5.4E-18 1.8E-22 145.7 11.2 86 3-88 5-94 (109)
64 2cq3_A RNA-binding protein 9; 99.7 1.6E-17 5.5E-22 141.5 13.9 83 4-88 13-95 (103)
65 2cqp_A RNA-binding protein 12; 99.7 3.6E-18 1.2E-22 144.1 9.4 82 4-85 13-94 (98)
66 2jrs_A RNA-binding protein 39; 99.7 4.8E-18 1.6E-22 147.7 10.2 84 3-86 23-106 (108)
67 2rs2_A Musashi-1, RNA-binding 99.7 6.9E-18 2.3E-22 146.7 11.1 83 4-87 23-105 (109)
68 2ek1_A RNA-binding protein 12; 99.7 2.8E-18 9.7E-23 143.7 8.1 81 5-85 14-94 (95)
69 2dgv_A HnRNP M, heterogeneous 99.7 8.5E-18 2.9E-22 140.0 10.8 83 3-87 5-87 (92)
70 2kxn_B Transformer-2 protein h 99.7 3.5E-18 1.2E-22 153.5 8.5 85 3-87 43-127 (129)
71 2cq4_A RNA binding motif prote 99.7 3.1E-18 1E-22 148.8 7.9 81 6-87 25-105 (114)
72 1x4e_A RNA binding motif, sing 99.7 1.2E-18 4E-23 143.4 4.9 82 3-84 2-83 (85)
73 2dgx_A KIAA0430 protein; RRM d 99.7 1.7E-17 5.7E-22 140.6 11.9 81 4-87 7-91 (96)
74 2kn4_A Immunoglobulin G-bindin 99.7 1.1E-17 3.6E-22 152.8 11.4 83 5-87 69-151 (158)
75 2dgw_A Probable RNA-binding pr 99.7 2.4E-17 8.1E-22 137.5 12.4 81 4-87 8-88 (91)
76 2fc9_A NCL protein; structure 99.7 2.1E-17 7.1E-22 140.4 11.3 80 4-87 13-92 (101)
77 2fc8_A NCL protein; structure 99.7 2.5E-17 8.5E-22 139.9 11.6 81 4-87 13-93 (102)
78 2kt5_A RNA and export factor-b 99.7 2.1E-17 7.1E-22 145.8 11.4 83 4-87 33-115 (124)
79 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.5E-17 8.6E-22 152.7 12.5 84 5-88 71-154 (165)
80 2dgu_A Heterogeneous nuclear r 99.7 5.1E-17 1.7E-21 138.9 13.2 79 4-90 9-87 (103)
81 2cpy_A RNA-binding protein 12; 99.7 9.2E-18 3.1E-22 146.7 8.8 82 4-87 13-95 (114)
82 2cpi_A CCR4-NOT transcription 99.7 2E-17 6.7E-22 143.9 10.8 83 5-87 14-102 (111)
83 1x4c_A Splicing factor, argini 99.7 4.7E-17 1.6E-21 140.6 13.1 76 5-87 14-94 (108)
84 2mss_A Protein (musashi1); RNA 99.7 5.1E-18 1.8E-22 136.4 6.4 75 8-83 1-75 (75)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.2E-17 7.6E-22 147.1 11.0 80 4-83 61-140 (140)
86 2ki2_A SS-DNA binding protein 99.7 3E-18 1E-22 142.4 4.7 80 7-87 2-81 (90)
87 1wez_A HnRNP H', FTP-3, hetero 99.7 1.4E-17 4.6E-22 143.8 8.9 80 4-86 13-92 (102)
88 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.5E-18 1.9E-22 144.6 6.0 81 4-86 17-98 (100)
89 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.4E-18 2.2E-22 136.0 5.8 76 7-83 1-76 (77)
90 2lcw_A RNA-binding protein FUS 99.5 7E-19 2.4E-23 153.6 0.0 85 3-87 4-96 (116)
91 1wg5_A Heterogeneous nuclear r 99.7 2.8E-17 9.6E-22 141.3 9.6 81 4-86 13-94 (104)
92 2cpx_A Hypothetical protein FL 99.7 7.9E-18 2.7E-22 145.9 6.0 85 4-88 23-107 (115)
93 3pgw_S U1-70K; protein-RNA com 99.7 8.4E-17 2.9E-21 172.1 15.1 84 5-88 101-184 (437)
94 2lea_A Serine/arginine-rich sp 99.7 9.4E-18 3.2E-22 151.7 6.5 84 5-88 46-129 (135)
95 1s79_A Lupus LA protein; RRM, 99.7 1.9E-17 6.4E-22 143.6 8.1 80 4-85 9-88 (103)
96 1x5o_A RNA binding motif, sing 99.7 4.6E-17 1.6E-21 141.1 10.4 82 4-86 23-112 (114)
97 2l9b_A MRNA 3'-END-processing 99.7 1.6E-17 5.6E-22 145.7 7.3 81 152-232 24-106 (109)
98 2dnq_A RNA-binding protein 4B; 99.7 8.5E-17 2.9E-21 134.1 11.3 78 3-88 5-82 (90)
99 1sjq_A Polypyrimidine tract-bi 99.7 4.2E-17 1.4E-21 143.2 9.8 79 3-87 13-93 (105)
100 2db1_A Heterogeneous nuclear r 99.7 3.7E-17 1.2E-21 144.2 9.4 81 4-86 15-98 (118)
101 2err_A Ataxin-2-binding protei 99.7 5.5E-17 1.9E-21 140.8 10.1 81 4-86 27-107 (109)
102 1x4g_A Nucleolysin TIAR; struc 99.7 1.1E-16 3.9E-21 138.0 12.0 79 4-88 23-101 (109)
103 1fj7_A Nucleolin RBD1, protein 99.7 5.5E-18 1.9E-22 143.9 3.3 82 4-87 15-96 (101)
104 2nlw_A Eukaryotic translation 99.7 5.3E-17 1.8E-21 139.9 9.4 80 5-86 14-100 (105)
105 1x4d_A Matrin 3; structural ge 99.7 4.7E-17 1.6E-21 141.8 9.0 79 3-87 12-93 (102)
106 1nu4_A U1A RNA binding domain; 99.7 4.2E-17 1.4E-21 137.0 8.3 84 1-87 3-90 (97)
107 2cq1_A PTB-like protein L; RRM 99.7 1.5E-16 5E-21 138.0 11.9 80 3-88 12-93 (101)
108 2wbr_A GW182, gawky, LD47780P; 99.7 9.6E-17 3.3E-21 137.2 9.9 76 3-84 4-79 (89)
109 1iqt_A AUF1, heterogeneous nuc 99.7 1.8E-17 6.2E-22 132.9 4.7 75 8-83 1-75 (75)
110 1wel_A RNA-binding protein 12; 99.7 2.2E-17 7.5E-22 146.1 5.6 81 5-86 24-104 (124)
111 2dgt_A RNA-binding protein 30; 99.7 3.8E-16 1.3E-20 130.6 12.7 77 3-87 7-83 (92)
112 2la4_A Nuclear and cytoplasmic 99.7 1E-16 3.4E-21 136.1 9.2 76 4-85 25-100 (101)
113 2xs2_A Deleted in azoospermia- 99.7 5.7E-17 2E-21 137.9 7.7 80 5-87 8-87 (102)
114 1wex_A Hypothetical protein (r 99.7 1.3E-16 4.4E-21 138.9 10.1 78 4-87 13-92 (104)
115 2e5g_A U6 snRNA-specific termi 99.7 2.4E-16 8.1E-21 132.6 11.0 78 4-87 6-83 (94)
116 3r27_A HnRNP L, heterogeneous 99.7 1.9E-16 6.5E-21 137.9 10.7 78 3-86 18-97 (100)
117 2hgn_A Heterogeneous nuclear r 99.7 1.4E-17 4.6E-22 152.6 3.5 81 4-87 44-124 (139)
118 2hvz_A Splicing factor, argini 99.7 1.6E-16 5.6E-21 134.8 10.0 76 7-87 1-76 (101)
119 2cpd_A Apobec-1 stimulating pr 99.7 5E-16 1.7E-20 131.6 12.9 76 4-87 13-90 (99)
120 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-16 4.6E-21 140.7 9.7 80 4-87 26-106 (111)
121 2hgl_A HNRPF protein, heteroge 99.7 7.7E-17 2.6E-21 147.0 8.3 80 4-85 42-124 (136)
122 1l3k_A Heterogeneous nuclear r 99.7 2.3E-16 7.7E-21 146.5 11.6 84 5-89 103-186 (196)
123 2cqh_A IGF-II mRNA-binding pro 99.7 1.6E-16 5.4E-21 133.0 9.6 78 3-87 5-84 (93)
124 4f02_A Polyadenylate-binding p 99.7 2.9E-16 9.9E-21 150.5 12.6 82 5-86 14-95 (213)
125 1fxl_A Paraneoplastic encephal 99.7 4.6E-16 1.6E-20 140.0 13.1 82 6-87 2-83 (167)
126 1why_A Hypothetical protein ri 99.7 2E-16 7E-21 133.5 10.0 78 4-87 15-94 (97)
127 2cpj_A Non-POU domain-containi 99.7 1.9E-16 6.6E-21 134.1 9.9 78 4-87 13-90 (99)
128 2krb_A Eukaryotic translation 99.7 4.5E-17 1.5E-21 133.4 5.7 73 6-80 1-80 (81)
129 2ad9_A Polypyrimidine tract-bi 99.7 1.8E-16 6.3E-21 141.9 10.0 80 3-88 28-109 (119)
130 2kvi_A Nuclear polyadenylated 99.7 1.1E-16 3.7E-21 135.4 8.1 77 4-88 8-85 (96)
131 1wf1_A RNA-binding protein RAL 99.7 2.9E-16 9.8E-21 135.7 10.9 75 5-87 26-101 (110)
132 3md3_A Nuclear and cytoplasmic 99.7 4.6E-16 1.6E-20 139.8 12.6 81 4-84 85-165 (166)
133 1fjc_A Nucleolin RBD2, protein 99.7 1.3E-16 4.4E-21 134.0 8.2 79 4-87 14-92 (96)
134 1b7f_A Protein (SXL-lethal pro 99.7 4.1E-16 1.4E-20 141.1 12.0 83 5-87 2-84 (168)
135 2a3j_A U1 small nuclear ribonu 99.7 2.3E-16 7.7E-21 142.3 10.1 81 4-87 27-111 (127)
136 3lqv_A PRE-mRNA branch site pr 99.7 3E-16 1E-20 136.2 10.3 81 3-86 5-85 (115)
137 2ytc_A PRE-mRNA-splicing facto 99.7 3.6E-16 1.2E-20 128.3 10.2 75 4-84 10-85 (85)
138 2dnp_A RNA-binding protein 14; 99.7 5.8E-16 2E-20 129.0 11.6 76 3-86 6-81 (90)
139 3egn_A RNA-binding protein 40; 99.7 7.6E-17 2.6E-21 145.5 6.7 84 4-87 43-131 (143)
140 2xnq_A Nuclear polyadenylated 99.7 6.5E-16 2.2E-20 131.6 12.0 76 3-86 19-95 (97)
141 2jvo_A Nucleolar protein 3; nu 99.7 3.3E-16 1.1E-20 136.2 10.4 77 4-88 29-105 (108)
142 2lmi_A GRSF-1, G-rich sequence 99.7 4E-17 1.4E-21 141.0 4.4 82 3-86 8-92 (107)
143 2e5j_A Methenyltetrahydrofolat 99.7 2.6E-16 8.8E-21 133.1 9.1 78 5-87 18-95 (97)
144 2dnn_A RNA-binding protein 12; 99.6 4.1E-16 1.4E-20 136.9 10.1 78 6-86 16-93 (109)
145 2qfj_A FBP-interacting repress 99.6 7.6E-16 2.6E-20 145.1 11.8 83 5-87 124-206 (216)
146 2yh0_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 142.1 12.3 84 4-87 112-195 (198)
147 2f3j_A RNA and export factor b 99.6 4.6E-16 1.6E-20 147.1 9.6 81 5-86 87-167 (177)
148 1x5p_A Negative elongation fac 99.6 1.9E-15 6.6E-20 127.7 12.4 77 4-88 13-89 (97)
149 2j8a_A Histone-lysine N-methyl 99.6 5.5E-16 1.9E-20 141.3 9.5 80 7-86 3-96 (136)
150 2g4b_A Splicing factor U2AF 65 99.6 9.3E-16 3.2E-20 139.5 11.0 80 5-84 93-172 (172)
151 2dha_A FLJ20171 protein; RRM d 99.6 2.8E-16 9.7E-21 141.0 7.4 81 4-86 21-105 (123)
152 1l3k_A Heterogeneous nuclear r 99.6 1.1E-15 3.9E-20 141.8 11.7 82 4-86 11-92 (196)
153 2i2y_A Fusion protein consists 99.6 6.2E-16 2.1E-20 140.6 9.0 79 4-87 71-149 (150)
154 3beg_B Splicing factor, argini 99.6 5.4E-16 1.9E-20 135.9 8.2 75 5-86 15-94 (115)
155 2e44_A Insulin-like growth fac 99.6 8.5E-16 2.9E-20 129.0 8.7 78 5-86 14-92 (96)
156 1x4f_A Matrin 3; structural ge 99.6 7E-16 2.4E-20 136.8 8.4 79 3-87 22-103 (112)
157 1wg1_A KIAA1579 protein, homol 99.6 1.3E-15 4.4E-20 126.7 9.2 77 3-86 2-78 (88)
158 2cjk_A Nuclear polyadenylated 99.6 7.7E-16 2.6E-20 139.4 8.0 80 6-86 87-166 (167)
159 1wf0_A TDP-43, TAR DNA-binding 99.6 8.1E-16 2.8E-20 127.6 7.3 79 3-88 2-80 (88)
160 1whx_A Hypothetical protein ri 99.6 9.6E-16 3.3E-20 133.7 8.1 76 5-86 9-84 (111)
161 2hgm_A HNRPF protein, heteroge 99.6 5.9E-16 2E-20 139.7 6.9 79 4-85 40-120 (126)
162 3md3_A Nuclear and cytoplasmic 99.6 4.2E-15 1.4E-19 133.6 11.8 80 7-87 1-80 (166)
163 2qfj_A FBP-interacting repress 99.6 2.1E-15 7.3E-20 142.0 9.7 82 5-86 27-108 (216)
164 2dnl_A Cytoplasmic polyadenyla 99.6 3.2E-15 1.1E-19 130.4 9.7 80 3-85 5-87 (114)
165 4f02_A Polyadenylate-binding p 99.6 5.2E-15 1.8E-19 141.7 11.8 80 5-86 102-181 (213)
166 1b7f_A Protein (SXL-lethal pro 99.6 4.4E-15 1.5E-19 134.2 10.7 80 4-83 87-168 (168)
167 1fxl_A Paraneoplastic encephal 99.6 5.3E-15 1.8E-19 133.0 10.6 79 5-83 87-167 (167)
168 3nmr_A Cugbp ELAV-like family 99.6 6.1E-15 2.1E-19 133.9 10.6 83 4-86 1-88 (175)
169 3d2w_A TAR DNA-binding protein 99.6 3.7E-15 1.3E-19 125.3 8.4 76 3-87 8-85 (89)
170 2cjk_A Nuclear polyadenylated 99.6 3.4E-15 1.2E-19 135.2 8.7 79 5-85 2-80 (167)
171 2hzc_A Splicing factor U2AF 65 99.6 5.3E-15 1.8E-19 121.5 9.1 73 3-82 3-86 (87)
172 1sjr_A Polypyrimidine tract-bi 99.6 1E-14 3.4E-19 137.6 11.5 78 6-87 46-125 (164)
173 2cq2_A Hypothetical protein LO 99.6 7.8E-15 2.7E-19 130.6 9.8 79 3-87 22-107 (114)
174 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-14 4E-19 143.6 12.1 82 3-87 6-91 (282)
175 3nmr_A Cugbp ELAV-like family 99.6 1.1E-14 3.7E-19 132.3 10.1 79 5-84 94-175 (175)
176 3zzy_A Polypyrimidine tract-bi 99.6 2.9E-14 9.9E-19 129.7 12.8 76 7-87 29-107 (130)
177 2pe8_A Splicing factor 45; RRM 99.5 2.5E-14 8.4E-19 124.7 11.6 84 3-86 5-94 (105)
178 3tyt_A Heterogeneous nuclear r 99.5 1.7E-14 5.7E-19 139.0 10.9 79 4-87 2-81 (205)
179 1fje_B Nucleolin RBD12, protei 99.5 2.4E-14 8E-19 131.1 9.7 77 5-86 98-174 (175)
180 2bz2_A Negative elongation fac 99.5 2.1E-14 7.3E-19 127.6 9.0 77 4-88 37-113 (121)
181 2voo_A Lupus LA protein; RNA-b 99.5 4.9E-14 1.7E-18 134.8 11.3 78 6-85 109-186 (193)
182 3smz_A Protein raver-1, ribonu 99.5 8.4E-14 2.9E-18 137.6 13.3 83 4-86 93-175 (284)
183 2diu_A KIAA0430 protein; struc 99.5 4.9E-14 1.7E-18 121.9 9.7 74 4-87 6-85 (96)
184 2e5i_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 126.7 10.3 74 8-87 27-103 (124)
185 2ghp_A U4/U6 snRNA-associated 99.5 5.1E-14 1.8E-18 139.7 10.8 82 4-86 208-291 (292)
186 3smz_A Protein raver-1, ribonu 99.5 7.3E-14 2.5E-18 138.1 10.9 84 4-88 182-266 (284)
187 3pgw_A U1-A; protein-RNA compl 99.5 1.1E-13 3.7E-18 136.7 11.4 75 5-84 206-281 (282)
188 1fje_B Nucleolin RBD12, protei 99.5 1.3E-14 4.6E-19 132.7 4.5 82 3-86 10-91 (175)
189 2adc_A Polypyrimidine tract-bi 99.5 9.9E-14 3.4E-18 134.2 10.6 78 4-86 32-110 (229)
190 2dit_A HIV TAT specific factor 99.5 3.3E-13 1.1E-17 117.4 12.2 80 4-87 13-103 (112)
191 1qm9_A Polypyrimidine tract-bi 99.5 1.6E-13 5.6E-18 128.4 10.7 78 5-87 2-80 (198)
192 2ghp_A U4/U6 snRNA-associated 99.4 3.7E-13 1.3E-17 133.5 10.1 83 5-88 116-199 (292)
193 3u1l_A PRE-mRNA-splicing facto 99.4 2.2E-13 7.6E-18 135.5 8.2 78 5-88 133-231 (240)
194 3sde_A Paraspeckle component 1 99.4 5.6E-13 1.9E-17 131.6 10.9 81 5-86 95-179 (261)
195 3tyt_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 129.4 8.8 77 5-83 122-204 (205)
196 3v4m_A Splicing factor U2AF 65 99.4 8.2E-13 2.8E-17 114.9 9.7 84 3-86 2-97 (105)
197 1jmt_A Splicing factor U2AF 35 99.4 2.3E-13 7.9E-18 118.1 5.7 72 11-83 20-103 (104)
198 1qm9_A Polypyrimidine tract-bi 99.4 4.2E-13 1.4E-17 125.6 7.9 77 5-86 119-197 (198)
199 3sde_A Paraspeckle component 1 99.4 7.4E-13 2.5E-17 130.7 10.0 75 5-85 21-95 (261)
200 3ue2_A Poly(U)-binding-splicin 99.4 1.3E-12 4.4E-17 116.5 10.3 83 4-86 18-109 (118)
201 2g4b_A Splicing factor U2AF 65 99.4 1.1E-12 3.9E-17 119.0 10.2 75 5-86 3-88 (172)
202 2adc_A Polypyrimidine tract-bi 99.4 8.1E-13 2.8E-17 127.8 9.6 77 5-86 150-228 (229)
203 2j8p_A Cleavage stimulation fa 99.4 2.7E-13 9.3E-18 103.3 4.5 44 509-552 6-49 (49)
204 2yh0_A Splicing factor U2AF 65 99.4 1.8E-12 6E-17 120.4 10.7 76 4-86 2-88 (198)
205 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.3E-11 1.1E-15 104.4 11.4 75 6-87 10-91 (100)
206 3tht_A Alkylated DNA repair pr 99.2 2.5E-11 8.7E-16 126.5 9.7 76 3-84 15-97 (345)
207 3s6e_A RNA-binding protein 39; 99.2 1.1E-10 3.8E-15 103.4 9.9 79 4-86 5-93 (114)
208 2dnr_A Synaptojanin-1; RRM dom 98.9 3.4E-09 1.1E-13 90.9 9.2 74 4-86 5-86 (91)
209 1owx_A Lupus LA protein, SS-B, 98.9 2.9E-09 9.9E-14 95.7 7.7 76 4-85 16-95 (121)
210 3dxb_A Thioredoxin N-terminall 98.8 6.4E-09 2.2E-13 99.9 8.0 70 17-86 140-213 (222)
211 1ufw_A Synaptojanin 2; RNP dom 98.7 1.4E-08 4.9E-13 87.5 6.4 73 4-85 13-94 (95)
212 2l9w_A U4/U6 snRNA-associated- 98.2 4.5E-06 1.6E-10 73.9 9.2 74 5-84 20-98 (117)
213 1wey_A Calcipressin 1; structu 97.2 0.0012 4.1E-08 57.8 8.5 77 4-86 3-84 (104)
214 2dhx_A Poly (ADP-ribose) polym 96.9 0.0058 2E-07 53.4 10.2 73 4-85 6-83 (104)
215 1uw4_A UPF3X; nonsense mediate 96.5 0.022 7.6E-07 48.5 10.8 79 7-85 2-87 (91)
216 1whv_A Poly(A)-specific ribonu 96.2 0.012 4.1E-07 51.0 7.4 56 5-69 15-70 (100)
217 3ctr_A Poly(A)-specific ribonu 95.4 0.019 6.3E-07 50.0 5.3 54 7-69 7-60 (101)
218 1wwh_A Nucleoporin 35, nucleop 94.9 0.13 4.6E-06 45.9 9.6 72 5-84 23-95 (119)
219 2kn4_A Immunoglobulin G-bindin 94.4 0.032 1.1E-06 50.0 4.3 35 35-71 2-36 (158)
220 3pq1_A Poly(A) RNA polymerase; 94.1 0.028 9.4E-07 60.8 3.8 55 6-66 53-107 (464)
221 2l08_A Regulator of nonsense t 93.4 0.14 4.8E-06 44.2 6.3 79 6-84 9-94 (97)
222 2i2y_A Fusion protein consists 92.7 0.039 1.3E-06 49.3 1.8 41 44-85 9-50 (150)
223 3p3d_A Nucleoporin 53; structu 92.1 0.15 5.3E-06 46.2 5.0 78 6-85 7-98 (132)
224 3d45_A Poly(A)-specific ribonu 80.9 3.2 0.00011 45.0 7.9 56 6-70 440-495 (507)
225 4eyt_A Telomerase associated p 34.9 2.1E+02 0.0073 24.4 9.6 72 5-84 11-89 (129)
226 2g0c_A ATP-dependent RNA helic 33.6 60 0.0021 25.3 5.0 68 8-84 2-75 (76)
227 2qsf_X RAD23, UV excision repa 27.4 43 0.0015 31.4 3.6 32 183-214 34-69 (171)
228 1kbh_B CREB-binding protein, n 26.5 19 0.00066 28.0 0.8 41 174-214 4-45 (59)
229 3mfb_A Uncharacterized protein 25.3 79 0.0027 29.3 4.9 36 18-53 3-41 (157)
230 3e21_A HFAF1, FAS-associated f 21.3 96 0.0033 22.8 3.7 32 181-212 6-39 (45)
231 3ts2_A Protein LIN-28 homolog 20.7 12 0.00042 34.0 -1.6 28 21-56 2-29 (148)
232 4e8u_A Putative uncharacterize 20.7 1.4E+02 0.0048 28.0 5.7 56 8-66 14-81 (172)
233 3fry_A Probable copper-exporti 20.5 2.5E+02 0.0087 20.7 6.3 56 6-68 6-61 (73)
No 1
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=99.88 E-value=1.3e-23 Score=199.09 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=68.3
Q ss_pred CCCCCcccccCC-CCC-hhhHHhhcCChHHHHHHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHhCCCChhhhhc
Q 008795 152 SNQNGIQSQLAS-PND-PLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQVLQM 229 (553)
Q Consensus 152 ~~~~gl~~~~~~-a~D-~IS~~La~l~p~QL~eiLs~LK~l~~~~P~~Ar~LL~~nPQLa~AL~QA~llLgmid~~v~q~ 229 (553)
..+.|++..... ++| .|+++|++|+++||+|+|++||.|+.+||++||+||.+||||+||+|||+|+||+||++++++
T Consensus 29 ~LP~G~~~~~~~t~pd~~IS~~Ls~lpp~QL~eiL~qmK~l~~~nP~~ar~LL~~nPQLayAl~QAlL~mgivd~~~l~~ 108 (174)
T 4eba_G 29 WLPVGVDVNINMTTPAMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSVDQLTQ 108 (174)
T ss_dssp CCCCCBCCCTTTCCHHHHHHHHHTTSCHHHHHHHHHHHHHGGGC--CCHHHHHHSCTHHHHHHHHHHHHTSCCSSSTHHH
T ss_pred CCCCCCCCCCCcCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHHH
Confidence 334444443333 468 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 008795 230 PIL 232 (553)
Q Consensus 230 ~~~ 232 (553)
...
T Consensus 109 v~~ 111 (174)
T 4eba_G 109 LAM 111 (174)
T ss_dssp HC-
T ss_pred HHH
Confidence 743
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=159.93 Aligned_cols=81 Identities=27% Similarity=0.527 Sum_probs=78.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
++++|||+|||+++||++|+++|++||.|++|++++|+.||+++|||||+|.+.++|++|++.|||..|+||.|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008795 85 N 85 (553)
Q Consensus 85 ~ 85 (553)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 3
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=6.1e-20 Score=164.59 Aligned_cols=85 Identities=32% Similarity=0.570 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||++++|++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
+.+..
T Consensus 120 ~~~~~ 124 (139)
T 1u6f_A 120 ASGHQ 124 (139)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 4
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=2.2e-19 Score=164.42 Aligned_cols=85 Identities=26% Similarity=0.462 Sum_probs=81.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++||++|+++|+.||.|++|+|+.|+.|++++|||||+|.+.++|++|++.|+++.|+|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
+....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87544
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=156.72 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=80.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+||+++++|++|+++|++||.|++|+|++|+.||+++|||||+|.+.++|++|++.|||..|+||.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9754
No 6
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=150.32 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=81.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSF-RLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~v-rLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
+.++++|||+|||+++++++|+++|+.||.|.+| +|+.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4678999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EecCCC
Q 008795 82 FAENDK 87 (553)
Q Consensus 82 ~A~~~~ 87 (553)
++..+.
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 998654
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=149.39 Aligned_cols=85 Identities=34% Similarity=0.609 Sum_probs=81.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..++++|||+|||+++++++|+++|++||.|++|++..|+.||+++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+..+.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98643
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=7.9e-20 Score=154.33 Aligned_cols=83 Identities=18% Similarity=0.375 Sum_probs=77.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEEEe
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRVDFA 83 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~L-ng~~I~GR~LrV~~A 83 (553)
+++|||+|||+++||++|+++|+.|| .|++|+|++|+.||++||||||+|.+.++|.+|++.+ ++..|+||+|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8999999999999999999999999999999999877 456899999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87543
No 9
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=4.6e-19 Score=154.22 Aligned_cols=84 Identities=24% Similarity=0.522 Sum_probs=80.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||++++|++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+.+.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8654
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.4e-18 Score=151.01 Aligned_cols=87 Identities=33% Similarity=0.523 Sum_probs=82.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 008795 83 AENDKGA 89 (553)
Q Consensus 83 A~~~~~~ 89 (553)
+..+...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=149.18 Aligned_cols=86 Identities=33% Similarity=0.475 Sum_probs=81.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008795 83 AENDKG 88 (553)
Q Consensus 83 A~~~~~ 88 (553)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987543
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=145.32 Aligned_cols=83 Identities=31% Similarity=0.518 Sum_probs=77.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 13
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.6e-19 Score=152.74 Aligned_cols=84 Identities=30% Similarity=0.527 Sum_probs=79.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||++++|++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|++|++.+++ .|+|+.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 98654
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=149.79 Aligned_cols=85 Identities=29% Similarity=0.537 Sum_probs=80.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++|++ +++..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3568999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ecCCCC
Q 008795 83 AENDKG 88 (553)
Q Consensus 83 A~~~~~ 88 (553)
+..+..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986543
No 15
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=151.09 Aligned_cols=85 Identities=26% Similarity=0.467 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 16
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=154.90 Aligned_cols=86 Identities=22% Similarity=0.522 Sum_probs=81.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 1 mas~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
|+..+.++|||+|||+++++++|+++|+.||.|++|+|..|+ +|+++|||||+|.+.++|++|++.|+|..|+|+.|+|
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 355678999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 008795 81 DFAENDK 87 (553)
Q Consensus 81 ~~A~~~~ 87 (553)
++++...
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9998654
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=150.62 Aligned_cols=85 Identities=31% Similarity=0.595 Sum_probs=81.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||++++|++|+++|+.||.|++|+|+.|+.+++++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 98654
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=149.70 Aligned_cols=85 Identities=26% Similarity=0.459 Sum_probs=81.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+..+.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98654
No 19
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=148.16 Aligned_cols=85 Identities=32% Similarity=0.523 Sum_probs=80.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRE---TGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~---TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
+.+.++|||+|||++++|++|+++|+.||.|++|++..|+. |++++|||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46789999999999999999999999999999999999987 779999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 008795 80 VDFAENDK 87 (553)
Q Consensus 80 V~~A~~~~ 87 (553)
|+++..+.
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99998654
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.1e-18 Score=142.41 Aligned_cols=81 Identities=28% Similarity=0.561 Sum_probs=78.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+|||+++++++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|++|++.|+|..|+|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 008795 86 D 86 (553)
Q Consensus 86 ~ 86 (553)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=151.13 Aligned_cols=85 Identities=29% Similarity=0.554 Sum_probs=80.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceeCCEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ------GYEINGRQ 77 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Ln------g~~I~GR~ 77 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+|++|+.||+++|||||+|.+.++|.+|++.++ +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEecCCCC
Q 008795 78 LRVDFAENDKG 88 (553)
Q Consensus 78 LrV~~A~~~~~ 88 (553)
|+|+|+..+..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987543
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=150.66 Aligned_cols=85 Identities=33% Similarity=0.522 Sum_probs=80.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+..+.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98654
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=151.21 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=80.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
+....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86543
No 24
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=8.9e-19 Score=143.62 Aligned_cols=82 Identities=27% Similarity=0.511 Sum_probs=78.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 008795 83 AE 84 (553)
Q Consensus 83 A~ 84 (553)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 25
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1e-18 Score=147.38 Aligned_cols=83 Identities=43% Similarity=0.933 Sum_probs=79.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
++++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 26
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.7e-18 Score=147.85 Aligned_cols=83 Identities=30% Similarity=0.562 Sum_probs=78.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||++++|++|+++|+.|| |++|+|++|+.||+++|||||+|.+.++|++|+ .|++..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45679999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 27
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=149.03 Aligned_cols=84 Identities=32% Similarity=0.606 Sum_probs=79.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRET-GKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~T-GksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
..+.++|||+|||++++|++|+++|+.|| |++|+|+.|+.| |+++|||||+|.+.++|++|+ .|++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34679999999999999999999999999 999999999998 999999999999999999999 999999999999999
Q ss_pred EecCCCC
Q 008795 82 FAENDKG 88 (553)
Q Consensus 82 ~A~~~~~ 88 (553)
++..+..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987544
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=145.30 Aligned_cols=82 Identities=24% Similarity=0.514 Sum_probs=79.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 008795 84 EN 85 (553)
Q Consensus 84 ~~ 85 (553)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=8.8e-19 Score=149.87 Aligned_cols=85 Identities=28% Similarity=0.470 Sum_probs=80.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI---NGRQLR 79 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I---~GR~Lr 79 (553)
..+.++|||+|||++++|++|+++|++||.|++|+|+.|+.||+++|||||+|.+.++|++|++.|++..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred EEEecCCC
Q 008795 80 VDFAENDK 87 (553)
Q Consensus 80 V~~A~~~~ 87 (553)
|+++..+.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998654
No 30
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=6.5e-19 Score=155.40 Aligned_cols=85 Identities=29% Similarity=0.448 Sum_probs=80.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++|+++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
..+..
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 86544
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=148.80 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=80.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVID-RETGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRVD 81 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~D-r~TGksKGyAFVeF~d~e~A~~AI~~L-ng~~I~GR~LrV~ 81 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+|+.| +.+|+++|||||+|.+.++|++|++.| ++..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 46789999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred EecCCCC
Q 008795 82 FAENDKG 88 (553)
Q Consensus 82 ~A~~~~~ 88 (553)
|+..+..
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987543
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=147.36 Aligned_cols=86 Identities=23% Similarity=0.438 Sum_probs=81.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHhccCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE---
Q 008795 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVV-SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ--- 77 (553)
Q Consensus 2 as~~srtVFVGNLP~dvTEedLre~Fs~fG~V~-~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~--- 77 (553)
...+.++|||+|||++++|++|+++|+.||.|+ +|+++.|+.||+++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEEEecCCC
Q 008795 78 -LRVDFAENDK 87 (553)
Q Consensus 78 -LrV~~A~~~~ 87 (553)
|+|+|++...
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997643
No 33
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=149.95 Aligned_cols=85 Identities=28% Similarity=0.498 Sum_probs=80.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVV--------SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~--------~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~ 74 (553)
..+.++|||+|||+++++++|+++|+.||.|+ .|+|+.|+.+|+++|||||+|.+.++|++|++.||+..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34679999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCC
Q 008795 75 GRQLRVDFAENDK 87 (553)
Q Consensus 75 GR~LrV~~A~~~~ 87 (553)
|+.|+|++++.+.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998654
No 34
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=146.72 Aligned_cols=84 Identities=25% Similarity=0.379 Sum_probs=78.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+|+.|+ +|+++|||||+|.+.++|++|++.|+++.|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 97643
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=145.94 Aligned_cols=83 Identities=33% Similarity=0.655 Sum_probs=79.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+++.|+ +|+++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 36
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=144.79 Aligned_cols=81 Identities=27% Similarity=0.516 Sum_probs=78.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=148.19 Aligned_cols=85 Identities=27% Similarity=0.428 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhc-cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICRE-VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE-INGRQLRV 80 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~-fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~-I~GR~LrV 80 (553)
..+.++|||+|||+++||++|+++|+. ||.|++|+|+.|+ +|+++|||||+|.+.++|++|++.|++.. |+|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456799999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EEecCCCC
Q 008795 81 DFAENDKG 88 (553)
Q Consensus 81 ~~A~~~~~ 88 (553)
+++..+..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99976543
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.1e-18 Score=152.20 Aligned_cols=82 Identities=22% Similarity=0.500 Sum_probs=78.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||++++|++|+++|++||.|++|++++|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 008795 83 AE 84 (553)
Q Consensus 83 A~ 84 (553)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-19 Score=150.81 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=76.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGP--VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY----EINGRQL 78 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~--V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~----~I~GR~L 78 (553)
.-.+|||+|||+++||++|+++|++||. |.+|++++|+.||++||||||+|.+.++|++|++.||+. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 679999999999999999999999999999999999986 5999999
Q ss_pred EEEEecC
Q 008795 79 RVDFAEN 85 (553)
Q Consensus 79 rV~~A~~ 85 (553)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 40
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.5e-18 Score=148.20 Aligned_cols=84 Identities=32% Similarity=0.528 Sum_probs=80.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|+|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
..+.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8654
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=3.5e-19 Score=148.99 Aligned_cols=81 Identities=20% Similarity=0.392 Sum_probs=73.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVG--PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG--~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
.+|||+|||+++||++|+++|+.|| .|.+++++.|+.||+++|||||+|.+.++|++|++.|||..|+||.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=147.51 Aligned_cols=83 Identities=30% Similarity=0.469 Sum_probs=79.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.++++|||+|||+++++++|+++|+.||.|.+|+++.|+.||+++|||||+|.+.++|++|++.|+|..|+|+.|+|+|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
..+
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 864
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=146.82 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=78.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++|+++|+++|+.||.|++|+|+.| +|+++|||||+|.+.++|.+|++.|++..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98754
No 44
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=144.07 Aligned_cols=84 Identities=25% Similarity=0.430 Sum_probs=78.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|++|++ +++.|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999998 47899999999999
Q ss_pred ecCCCC
Q 008795 83 AENDKG 88 (553)
Q Consensus 83 A~~~~~ 88 (553)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987544
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=143.78 Aligned_cols=83 Identities=25% Similarity=0.549 Sum_probs=77.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+|+.|+.+ ++|||||+|.+.++|++|++.|++..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 346799999999999999999999999999999999998643 689999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
++...
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98754
No 46
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=141.09 Aligned_cols=84 Identities=19% Similarity=0.417 Sum_probs=79.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGK-PKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGk-sKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...++|||+|||++++|++|+++|+.||.|.+|++..|+.++. ++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999988777 999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97643
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=4e-18 Score=145.55 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=79.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC---EEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING---RQLRV 80 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G---R~LrV 80 (553)
.+.++|||+|||++++|++|+++|+.||.|++|+|+.|+ +|+++|||||+|.+.++|++|++.|++..|.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999997 79999999999999999999999999999988 99999
Q ss_pred EEecCCCC
Q 008795 81 DFAENDKG 88 (553)
Q Consensus 81 ~~A~~~~~ 88 (553)
+|++.+..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987543
No 48
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=147.36 Aligned_cols=84 Identities=21% Similarity=0.417 Sum_probs=79.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++|++. +++.|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+..+.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98654
No 49
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=146.05 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=78.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVS--------FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING 75 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~--------vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G 75 (553)
...++|||+|||+++++++|+++|++||.|.+ ++++.|++||+++|||||+|.+.++|++|++.|+|..|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46799999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred EEEEEEEec
Q 008795 76 RQLRVDFAE 84 (553)
Q Consensus 76 R~LrV~~A~ 84 (553)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999984
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=4e-18 Score=149.38 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=75.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++||++|+++|+.||.|++|+|++|+ +++||||||+|.+.++|++|++.|+++.|+||.|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999986 4589999999999999999999999999999999999997
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 643
No 51
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-19 Score=150.41 Aligned_cols=85 Identities=73% Similarity=1.129 Sum_probs=80.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|++|++.|+|..|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCc
Q 008795 85 NDKGA 89 (553)
Q Consensus 85 ~~~~~ 89 (553)
.....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76543
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=142.33 Aligned_cols=82 Identities=35% Similarity=0.575 Sum_probs=77.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+|..|+. |+++|||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34679999999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred ecC
Q 008795 83 AEN 85 (553)
Q Consensus 83 A~~ 85 (553)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 53
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=6.2e-18 Score=139.66 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=75.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||++++|++|+++|+.||.|.+|+++.|+.||+++|||||+|.+.++|++|++ +++..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3568999999999999999999999999999999999999999999999999999999999996 588899999999998
Q ss_pred e
Q 008795 83 A 83 (553)
Q Consensus 83 A 83 (553)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=6e-18 Score=139.82 Aligned_cols=81 Identities=30% Similarity=0.546 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|++|+ .+++..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999999999999999999999999999 999999999999999997
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 55
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=148.32 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=77.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+|||++++|++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|++|++. +++.|+|+.|+|+++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 58999999999999999999999999999999999999999999999999999999999987 99999999999999986
Q ss_pred CC
Q 008795 86 DK 87 (553)
Q Consensus 86 ~~ 87 (553)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 56
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=8.7e-19 Score=149.99 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=79.5
Q ss_pred CCCcEEEEecCCC------CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-E
Q 008795 4 SQHRCVFVGNIPY------DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING-R 76 (553)
Q Consensus 4 ~~srtVFVGNLP~------dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G-R 76 (553)
..+++|||+|||+ ++++++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|++|++.|||..|+| |
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEecCC
Q 008795 77 QLRVDFAEND 86 (553)
Q Consensus 77 ~LrV~~A~~~ 86 (553)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999753
No 57
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=6.4e-18 Score=148.62 Aligned_cols=81 Identities=25% Similarity=0.501 Sum_probs=77.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|++|+ .|+|..|+|+.|+|++++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999999999999999999999999999 7999999999999999986
Q ss_pred CC
Q 008795 86 DK 87 (553)
Q Consensus 86 ~~ 87 (553)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 58
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-19 Score=156.81 Aligned_cols=84 Identities=20% Similarity=0.374 Sum_probs=79.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVS--FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY----EINGR 76 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~--vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~----~I~GR 76 (553)
....++|||+|||+++||++|+++|++||.|.. |+|++|+.||++||||||+|.+. +|.+|++.||+. .|+||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEecCCC
Q 008795 77 QLRVDFAENDK 87 (553)
Q Consensus 77 ~LrV~~A~~~~ 87 (553)
.|+|++++..+
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998643
No 59
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=157.83 Aligned_cols=82 Identities=28% Similarity=0.488 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVG--PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG--~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
+.++|||||||+++||++|+++|+.|| .|++|+|+.|+.||+++|||||+|.+.++|++|++.|||..|+||.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 60
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.5e-18 Score=170.38 Aligned_cols=81 Identities=20% Similarity=0.408 Sum_probs=77.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVG--PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG--~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..++|||+||++++||++|+++|+.|| .|++|+|++|+.||++||||||+|.+.++|++||+.||++.|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 008795 83 AEN 85 (553)
Q Consensus 83 A~~ 85 (553)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 875
No 61
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=9.4e-18 Score=143.69 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=77.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||++++|++|+++|+.||.|++|+|+.|+ +|+++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 62
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.8e-18 Score=144.49 Aligned_cols=82 Identities=23% Similarity=0.468 Sum_probs=75.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++||++|+++|+.||.|++|+|..+ ++++|||||+|.+.++|++|++.||+..|+|+.|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
++.+.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98654
No 63
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=145.66 Aligned_cols=86 Identities=30% Similarity=0.475 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGP-VVSFRLV-IDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQL 78 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~-V~~vrLv-~Dr~TGksKGyAFVeF~d~e~A~~AI~~Ln--g~~I~GR~L 78 (553)
+.+.++|||+|||+++++++|+++|+.||. |++|+++ .|+.||+++|||||+|.+.++|.+|++.|+ +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456899999999999999999999999998 9999998 899999999999999999999999999996 589999999
Q ss_pred EEEEecCCCC
Q 008795 79 RVDFAENDKG 88 (553)
Q Consensus 79 rV~~A~~~~~ 88 (553)
+|+|++++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 64
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=141.55 Aligned_cols=83 Identities=24% Similarity=0.504 Sum_probs=77.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||++++|++|+++|+.||.|++|+|+.|+. .++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4679999999999999999999999999999999999864 48999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 87643
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=144.06 Aligned_cols=82 Identities=15% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||++++|++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 008795 84 EN 85 (553)
Q Consensus 84 ~~ 85 (553)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=147.69 Aligned_cols=84 Identities=35% Similarity=0.648 Sum_probs=80.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9764
No 67
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=6.9e-18 Score=146.73 Aligned_cols=83 Identities=20% Similarity=0.343 Sum_probs=76.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||++++|++|+++|+.||.|++|++++|+.||+++|||||+|.+.++|++|++.+ +..|+|+.|+|+++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999976 59999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
..+.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 68
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.8e-18 Score=143.69 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=76.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||++++|++|+++|+.||.|++++++.|+.+|+++|||||+|.+.++|++|++.||+..|+||.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 008795 85 N 85 (553)
Q Consensus 85 ~ 85 (553)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 69
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=8.5e-18 Score=139.98 Aligned_cols=83 Identities=31% Similarity=0.510 Sum_probs=78.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|++..+ +|+++|||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999999874 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
++...
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98653
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=3.5e-18 Score=153.55 Aligned_cols=85 Identities=26% Similarity=0.565 Sum_probs=80.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||++++|++|+++|+.||.|++|+|++|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+..++
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98653
No 71
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-18 Score=148.81 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=77.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+|||+++++++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|++|+ .|+++.|+|+.|+|+++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 579999999999999999999999999999999999999999999999999999999999 9999999999999999986
Q ss_pred CC
Q 008795 86 DK 87 (553)
Q Consensus 86 ~~ 87 (553)
+.
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 72
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-18 Score=143.39 Aligned_cols=82 Identities=23% Similarity=0.473 Sum_probs=77.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
+.+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ec
Q 008795 83 AE 84 (553)
Q Consensus 83 A~ 84 (553)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=140.60 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCCCCCHHHHH----HHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLI----EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLr----e~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
.+.++|||+|||++++|++|+ ++|++||.|++|+|+.|+.+ +|||||+|.+.++|++|++.|||..|+||.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 357899999999999999999 99999999999999999876 89999999999999999999999999999999
Q ss_pred EEEecCCC
Q 008795 80 VDFAENDK 87 (553)
Q Consensus 80 V~~A~~~~ 87 (553)
|+++++..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997643
No 74
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.1e-17 Score=152.85 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=79.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||++++|++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|++|++.|||..|+|+.|+|++++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
...
T Consensus 149 ~~~ 151 (158)
T 2kn4_A 149 YGR 151 (158)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 75
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=137.47 Aligned_cols=81 Identities=22% Similarity=0.385 Sum_probs=77.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++++++|+++|+.| .|++|+|++| .+|+++|||||+|.+.++|.+|++ +++..|+||.|+|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 467999999999999999999999999 9999999999 789999999999999999999999 9999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
..+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8653
No 76
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=140.37 Aligned_cols=80 Identities=29% Similarity=0.500 Sum_probs=73.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||++++|++|+++|++||.| +++.+ .+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 468999999999999999999999999977 56666 68999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+.+.
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8653
No 77
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=139.90 Aligned_cols=81 Identities=36% Similarity=0.608 Sum_probs=75.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||++++|++|+++|+.| .+|+++.|+.+|+++|||||+|.+.++|++|++.|+++.|+|+.|+|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 467999999999999999999999977 47888899999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+.+.
T Consensus 90 ~~~~ 93 (102)
T 2fc8_A 90 KPKG 93 (102)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8643
No 78
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=2.1e-17 Score=145.78 Aligned_cols=83 Identities=18% Similarity=0.397 Sum_probs=78.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
..+++|||+|||+++++++|+++|+.||.|++|+|..|+ +|+++|||||+|.+.++|++|++.|++..|+|+.|+|++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 356899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8643
No 79
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=2.5e-17 Score=152.71 Aligned_cols=84 Identities=32% Similarity=0.526 Sum_probs=79.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||+|||+++++++|+++|+.||.|..|+|+.++.||+++|||||+|.+.++|.+||+.|||..|+|+.|+|.|+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008795 85 NDKG 88 (553)
Q Consensus 85 ~~~~ 88 (553)
.+..
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 7654
No 80
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=5.1e-17 Score=138.87 Aligned_cols=79 Identities=22% Similarity=0.450 Sum_probs=72.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++|+++|+++|+.||.|++|+++ +|||||+|.+.++|++|++.|++..|+|+.|+|+|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 357899999999999999999999999999999987 569999999999999999999999999999999999
Q ss_pred cCCCCcC
Q 008795 84 ENDKGAD 90 (553)
Q Consensus 84 ~~~~~~~ 90 (553)
.......
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8765443
No 81
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.2e-18 Score=146.66 Aligned_cols=82 Identities=21% Similarity=0.421 Sum_probs=77.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPV-VSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V-~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
.+.++|||+|||+++||++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|++|++. ++..|+||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 467899999999999999999999999999 899999998 999999999999999999999987 99999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98653
No 82
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=143.89 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=77.3
Q ss_pred CCcEEEEecCCCCCCHHHHH---HHHhccCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLI---EICREVGPVVSFRLVIDRETG---KPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLr---e~Fs~fG~V~~vrLv~Dr~TG---ksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~L 78 (553)
..++|||+|||++++|++|+ ++|++||.|.+|+|..|+.++ +++|||||+|.+.++|++|++.||++.|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 57899999999999999999 999999999999999998765 456999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 008795 79 RVDFAENDK 87 (553)
Q Consensus 79 rV~~A~~~~ 87 (553)
+|+|+..+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998654
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=140.64 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=72.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-----EEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING-----RQLR 79 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G-----R~Lr 79 (553)
..++|||+|||++++|++|+++|+.||.|++|+|+.| |||||+|.+.++|++|++.||+..|+| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 5789999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred EEEecCCC
Q 008795 80 VDFAENDK 87 (553)
Q Consensus 80 V~~A~~~~ 87 (553)
|+++.++.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99998754
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=5.1e-18 Score=136.42 Aligned_cols=75 Identities=24% Similarity=0.436 Sum_probs=72.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 8 tVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
+|||+|||+++++++|+++|++||.|.+|++..|+.+|+++|||||+|.+.++|++|++ +++..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999998 9999999999999986
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=147.07 Aligned_cols=80 Identities=28% Similarity=0.515 Sum_probs=76.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|++++++.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999986
No 86
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=3e-18 Score=142.39 Aligned_cols=80 Identities=41% Similarity=0.687 Sum_probs=74.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
++|||+|||++++|++|+++|+.||.|++|++..|+.+|+++|||||+|.+.+ |.+|++.|||..|+|+.|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999864
Q ss_pred C
Q 008795 87 K 87 (553)
Q Consensus 87 ~ 87 (553)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 87
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=143.76 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=74.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++||++|+++|+.|| +++|+|++|+ +|+++|||||+|.+.++|++|++ +++..|+||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4678999999999999999999999999 5599999998 89999999999999999999995 7999999999999998
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 88
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-18 Score=144.59 Aligned_cols=81 Identities=35% Similarity=0.631 Sum_probs=75.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDR-ETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr-~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...++|||+|||+++++++|+++|+.|| |++|+|+.|+ .+|+++|||||+|.+.++|.+|+ .|+|..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4579999999999999999999999999 9999999998 69999999999999999999999 8999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
++.+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9764
No 89
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.4e-18 Score=136.03 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=73.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
++|||+|||+++++++|+++|++||.|.++++..|+.+|+++|||||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999987
No 90
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=7e-19 Score=153.56 Aligned_cols=85 Identities=28% Similarity=0.461 Sum_probs=80.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVS--------FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~--------vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~ 74 (553)
..+.++|||+|||+++++++|+++|+.||.|.+ |+|+.|+.+|+++|||||+|.+.++|++|++.|++..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457899999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCC
Q 008795 75 GRQLRVDFAENDK 87 (553)
Q Consensus 75 GR~LrV~~A~~~~ 87 (553)
|+.|+|+++..+.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998654
No 91
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-17 Score=141.33 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~-vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...++|||+|||+++||++|+++|+.||.|.+ |+|++| .+|+++|||||+|.+.++|++|++. ++..|+||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45799999999999999999999999999998 889988 7999999999999999999999997 99999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8754
No 92
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-18 Score=145.95 Aligned_cols=85 Identities=21% Similarity=0.412 Sum_probs=74.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++|+++|+++|+.||.|.++.+..+..+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999999999999954443333348999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
..+..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87543
No 93
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=8.4e-17 Score=172.13 Aligned_cols=84 Identities=32% Similarity=0.608 Sum_probs=80.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||+||++++|+++|+++|+.||.|+.|.|+.|+.||+++|||||+|.+.++|.+||+.|||+.|+|+.|+|+|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008795 85 NDKG 88 (553)
Q Consensus 85 ~~~~ 88 (553)
....
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7543
No 94
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=9.4e-18 Score=151.68 Aligned_cols=84 Identities=25% Similarity=0.444 Sum_probs=80.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||+|||+++|+++|+++|+.||.|++|+|+.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008795 85 NDKG 88 (553)
Q Consensus 85 ~~~~ 88 (553)
....
T Consensus 126 ~~~~ 129 (135)
T 2lea_A 126 YGRP 129 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=143.58 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|++|+. |+++|||||+|.+.++|.+|++ +++..|+|+.|+|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999999987 9999999999999999999998 8999999999999998
Q ss_pred cC
Q 008795 84 EN 85 (553)
Q Consensus 84 ~~ 85 (553)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 75
No 96
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=141.15 Aligned_cols=82 Identities=22% Similarity=0.436 Sum_probs=77.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------CC
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI--------NG 75 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I--------~G 75 (553)
.+.++|||+|||+++++++|+++|+.||.|++|+|+.|+ +|+++|||||+|.+.++|++|++.|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 457899999999999999999999999999999999998 999999999999999999999999999999 57
Q ss_pred EEEEEEEecCC
Q 008795 76 RQLRVDFAEND 86 (553)
Q Consensus 76 R~LrV~~A~~~ 86 (553)
+.|+|+|+++.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999854
No 97
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.6e-17 Score=145.73 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCCCCcccccC-CCCC-hhhHHhhcCChHHHHHHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHhCCCChhhhhc
Q 008795 152 SNQNGIQSQLA-SPND-PLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQVLQM 229 (553)
Q Consensus 152 ~~~~gl~~~~~-~a~D-~IS~~La~l~p~QL~eiLs~LK~l~~~~P~~Ar~LL~~nPQLa~AL~QA~llLgmid~~v~q~ 229 (553)
+.+.|.+.... .++| .|+++|++++++|++|||++||.|+..||++||+||.+||||+||||||+|+||+||+++++.
T Consensus 24 ~lP~G~~v~~~~~ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a~~LL~q~PQLAyAl~QalL~m~ivd~~~l~~ 103 (109)
T 2l9b_A 24 ELPSGIDVNINMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAASLLELCPQLSFVTAELLLTNGICKVDDLIP 103 (109)
T ss_dssp TCCCCBCCCTTTSCHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHTSSCHHHHTT
T ss_pred CCCCCCCCCCCCCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHHH
Confidence 34444444332 4778 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 008795 230 PIL 232 (553)
Q Consensus 230 ~~~ 232 (553)
.+.
T Consensus 104 ll~ 106 (109)
T 2l9b_A 104 LAS 106 (109)
T ss_dssp TC-
T ss_pred Hhc
Confidence 764
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=134.06 Aligned_cols=78 Identities=32% Similarity=0.591 Sum_probs=72.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|++. +|||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4578999999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008795 83 AENDKG 88 (553)
Q Consensus 83 A~~~~~ 88 (553)
+..+..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 986543
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.2e-17 Score=143.21 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQLRV 80 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Ln--g~~I~GR~LrV 80 (553)
..+.++|||+|||+++||++|+++|+.||.|++|+|++| ||||||+|.+.++|++|++.|+ +..|+||.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 357899999999999999999999999999999999865 7999999999999999999886 47899999999
Q ss_pred EEecCCC
Q 008795 81 DFAENDK 87 (553)
Q Consensus 81 ~~A~~~~ 87 (553)
+|++.+.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9998654
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=3.7e-17 Score=144.23 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=76.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGP---VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~---V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
.+.++|||+|||+++||++|+++|+.||. |++|+|++|+. |+++|||||+|.+.++|++|++ +++..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45789999999999999999999999999 89999999987 9999999999999999999999 9999999999999
Q ss_pred EEecCC
Q 008795 81 DFAEND 86 (553)
Q Consensus 81 ~~A~~~ 86 (553)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 101
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=140.84 Aligned_cols=81 Identities=26% Similarity=0.544 Sum_probs=76.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||++++|++|+++|++||.|++|+++.|+ ++++|||||+|.+.++|++|++.|+|..|+|+.|+|+++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999999885 458999999999999999999999999999999999999
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 102
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=138.02 Aligned_cols=79 Identities=20% Similarity=0.437 Sum_probs=74.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|++..|+|+.|+|+|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999876 799999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
+.+..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 103
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-18 Score=143.94 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=76.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++|+++|+++|+.||.|.. +++.|+.+|+++|||||+|.+.++|++|++ |++..|+|+.|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 36789999999999999999999999999988 778888899999999999999999999998 9999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
..+.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=139.86 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=75.0
Q ss_pred CCcEEEEecCCCCC------CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-E
Q 008795 5 QHRCVFVGNIPYDA------TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR-Q 77 (553)
Q Consensus 5 ~srtVFVGNLP~dv------TEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR-~ 77 (553)
.+++|||+|||+++ ++++|+++|++||.|++|+|. +.+|+++|||||+|.+.++|.+|++.|||..|+|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 47899999999999999999999999999999998 9
Q ss_pred EEEEEecCC
Q 008795 78 LRVDFAEND 86 (553)
Q Consensus 78 LrV~~A~~~ 86 (553)
|+|+++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=141.79 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEE
Q 008795 3 SSQHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG--YEINGRQLR 79 (553)
Q Consensus 3 s~~srtVFVGNLP~-dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng--~~I~GR~Lr 79 (553)
..++++|||+|||+ ++||++|+++|+.||.|++|+|++| +|||||+|.+.++|.+|++.|++ ..|+||.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34689999999999 9999999999999999999999865 58999999999999999999885 469999999
Q ss_pred EEEecCCC
Q 008795 80 VDFAENDK 87 (553)
Q Consensus 80 V~~A~~~~ 87 (553)
|.||...+
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998654
No 106
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=4.2e-17 Score=137.03 Aligned_cols=84 Identities=19% Similarity=0.429 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHH----HHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 008795 1 MASSQHRCVFVGNIPYDATEEQLI----EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR 76 (553)
Q Consensus 1 mas~~srtVFVGNLP~dvTEedLr----e~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR 76 (553)
++..++++|||+|||+++++++|+ ++|+.||.|.+|++.. +|+++|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345688999999999999999999 9999999999999873 688899999999999999999999999999999
Q ss_pred EEEEEEecCCC
Q 008795 77 QLRVDFAENDK 87 (553)
Q Consensus 77 ~LrV~~A~~~~ 87 (553)
.|+|+|+..+.
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999998754
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=137.99 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=72.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL--QGYEINGRQLRV 80 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~L--ng~~I~GR~LrV 80 (553)
..++++|||+|||++++|++|+++|+.||.|++|+++.+ ||||||+|.+.++|.+|++.| ++..|+||.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346799999999999999999999999999999998864 799999999999999999976 567899999999
Q ss_pred EEecCCCC
Q 008795 81 DFAENDKG 88 (553)
Q Consensus 81 ~~A~~~~~ 88 (553)
+|++.+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99986543
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=9.6e-17 Score=137.17 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
++-+..||||||++.+||++|+++|.+||+|++|++.. +||||||+|.+.++|++|++.||+.+++||.|+|++
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 45678899999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred ec
Q 008795 83 AE 84 (553)
Q Consensus 83 A~ 84 (553)
|.
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 95
No 109
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=1.8e-17 Score=132.95 Aligned_cols=75 Identities=27% Similarity=0.423 Sum_probs=72.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 8 tVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
+|||+|||+++++++|+++|++||.|.+|++..|+.+|+++|||||+|.+.++|++|++. ++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999984 889999999999885
No 110
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-17 Score=146.07 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=76.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||+|||+++||++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++|++ +|+..|+||.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 56899999999999999999999999999997777788899999999999999999999999 99999999999999997
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
.+
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 111
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-16 Score=130.58 Aligned_cols=77 Identities=29% Similarity=0.478 Sum_probs=71.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++++++|+++|+.||.|++|+++ ++||||+|.+.++|.+|++.||++.|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4568999999999999999999999999999999987 34999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
++.+.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 112
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1e-16 Score=136.13 Aligned_cols=76 Identities=29% Similarity=0.519 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
..+++|||+|||+++++++|+++|+.||.|++|++. +++|||||+|.+.++|.+|++.|+|..|+|+.|+|+|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 357899999999999999999999999999999987 35899999999999999999999999999999999998
Q ss_pred cC
Q 008795 84 EN 85 (553)
Q Consensus 84 ~~ 85 (553)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 113
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=5.7e-17 Score=137.86 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=76.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++++++|+++|+.||.|++|+++.|+ +|+++|||||+|.+.++|++|++ +++.++|+.|+|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 99999999999999999999998 9999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=138.91 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=70.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG--YEINGRQLRVD 81 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng--~~I~GR~LrV~ 81 (553)
.++++|||+|||++++|++|+++|++||.|++|+++.+ ||||||+|.+.++|.+|++.|++ ..|+|+.|+|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46799999999999999999999999999999998754 79999999999999999998865 45999999999
Q ss_pred EecCCC
Q 008795 82 FAENDK 87 (553)
Q Consensus 82 ~A~~~~ 87 (553)
|++.+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998644
No 115
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=132.57 Aligned_cols=78 Identities=29% Similarity=0.427 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++||++|+++|+.||.|.+| +.|+.+|+ ||||+|.+.++|++|++ |+++.|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999999999999987 67777777 99999999999999999 9999999999999988
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7543
No 116
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=137.94 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE--INGRQLRV 80 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~--I~GR~LrV 80 (553)
..++++|||+|||+++||++|+++|+.||.|++|+++++ ||||||+|.+.++|.+|++.|++.. |+||.|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 357899999999999999999999999999999999843 7999999999999999999998864 88999999
Q ss_pred EEecCC
Q 008795 81 DFAEND 86 (553)
Q Consensus 81 ~~A~~~ 86 (553)
.|++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 117
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=1.4e-17 Score=152.65 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=75.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++||++|+++|+.|| |++|+|++|++ |+++|||||+|.+.++|++|+ .+++..|+||.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3568999999999999999999999999 77999999986 999999999999999999999 78999999999999998
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 118
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=134.79 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=72.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
++|||+|||+++||++|+++|++||.|++|++..| ++|||||+|.+.++|++|++.|++..|+|+.|+|+++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6899999999999999999999999999999999999876
Q ss_pred C
Q 008795 87 K 87 (553)
Q Consensus 87 ~ 87 (553)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-16 Score=131.55 Aligned_cols=76 Identities=22% Similarity=0.454 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhcc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREV--GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~f--G~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
.+.++|||+|||+++++++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999 999998865 6799999999999999999999999999999999
Q ss_pred EecCCC
Q 008795 82 FAENDK 87 (553)
Q Consensus 82 ~A~~~~ 87 (553)
|++.+.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998654
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.3e-16 Score=140.69 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=72.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...++|||+|||++++|++|+++|+.|| .|..+++.. ++++|||||+|.+.++|++|++.|||.+|+||.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 899998853 35799999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
+....
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97543
No 121
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=7.7e-17 Score=147.03 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=76.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGP---VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~---V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV 80 (553)
.+.++|||+|||+++||++|+++|+.||. |++|+|++|+. |+++|||||+|.+.++|++|++ +++..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 35789999999999999999999999999 89999999987 9999999999999999999999 9999999999999
Q ss_pred EEecC
Q 008795 81 DFAEN 85 (553)
Q Consensus 81 ~~A~~ 85 (553)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99864
No 122
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=2.3e-16 Score=146.51 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=76.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++|+++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|.|+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 458999999999999999999999999999999999999999999999999999999999986 7999999999999998
Q ss_pred CCCCc
Q 008795 85 NDKGA 89 (553)
Q Consensus 85 ~~~~~ 89 (553)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 123
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=132.96 Aligned_cols=78 Identities=27% Similarity=0.501 Sum_probs=70.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGP-VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG-YEINGRQLRV 80 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~-V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng-~~I~GR~LrV 80 (553)
....++|||+|||+++||++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 5555552 379999999999999999999999 9999999999
Q ss_pred EEecCCC
Q 008795 81 DFAENDK 87 (553)
Q Consensus 81 ~~A~~~~ 87 (553)
+|+..+.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998653
No 124
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.9e-16 Score=150.47 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=78.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||||||+++||++|+++|++||.|++|+|++|+.||+++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 125
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=4.6e-16 Score=140.00 Aligned_cols=82 Identities=28% Similarity=0.537 Sum_probs=78.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
+++|||+|||++++|++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|.+|++.|++..++|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC
Q 008795 86 DK 87 (553)
Q Consensus 86 ~~ 87 (553)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=133.49 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN--GRQLRVD 81 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~--GR~LrV~ 81 (553)
.+.++|||+|||++++|++|+++|++||.|++|++..+ +|||||+|.+.++|++|++.||+..|+ |+.|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 46799999999999999999999999999999998754 789999999999999999999999999 9999999
Q ss_pred EecCCC
Q 008795 82 FAENDK 87 (553)
Q Consensus 82 ~A~~~~ 87 (553)
|++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998653
No 127
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=134.13 Aligned_cols=78 Identities=33% Similarity=0.531 Sum_probs=72.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|++||.|++|++..+ +|||||+|.+.++|++|++.|++..|+|+.|+|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999854 799999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+.+.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8643
No 128
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-17 Score=133.42 Aligned_cols=73 Identities=29% Similarity=0.498 Sum_probs=68.5
Q ss_pred CcEEEEecCCCCC------CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EE
Q 008795 6 HRCVFVGNIPYDA------TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR-QL 78 (553)
Q Consensus 6 srtVFVGNLP~dv------TEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR-~L 78 (553)
+++|||+|||+++ ++++|+++|++||.|++|++. +.+|+++|||||+|.+.++|.+|++.|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 46899999999999999999999999999999999 88
Q ss_pred EE
Q 008795 79 RV 80 (553)
Q Consensus 79 rV 80 (553)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=141.95 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=73.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG--YEINGRQLRV 80 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng--~~I~GR~LrV 80 (553)
..++++|||+|||+++||++|+++|+.||.|++|+|+.+ ||||||+|.+.++|.+|++.|++ ..|+||.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456899999999999999999999999999999999876 79999999999999999998874 6899999999
Q ss_pred EEecCCCC
Q 008795 81 DFAENDKG 88 (553)
Q Consensus 81 ~~A~~~~~ 88 (553)
+|++.+..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99986543
No 130
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.1e-16 Score=135.39 Aligned_cols=77 Identities=17% Similarity=0.409 Sum_probs=71.6
Q ss_pred CCCcEEEEecCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~-dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
.+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4789999999999 99999999999999999999984 78999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008795 83 AENDKG 88 (553)
Q Consensus 83 A~~~~~ 88 (553)
+..+..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 986543
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.9e-16 Score=135.72 Aligned_cols=75 Identities=27% Similarity=0.454 Sum_probs=70.3
Q ss_pred CCcEEEEecCCCC-CCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 5 QHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~d-vTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
..++|||+|||++ ++|++|+++|+.||.|++|++ ++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3589999999999 999999999999999999998 4899999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+..+
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8543
No 132
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.6e-16 Score=139.85 Aligned_cols=81 Identities=28% Similarity=0.580 Sum_probs=78.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=134.02 Aligned_cols=79 Identities=25% Similarity=0.452 Sum_probs=72.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++++++|+++|+.||.|..+ ..+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 357899999999999999999999999988766 357999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7643
No 134
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=4.1e-16 Score=141.08 Aligned_cols=83 Identities=27% Similarity=0.548 Sum_probs=79.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
++++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..++|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
...
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 135
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=142.26 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=74.1
Q ss_pred CCCcEEEEecCCCCCCHHHHH----HHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLI----EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLr----e~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
.++++|||+||++++++++|+ ++|++||.|++|.+. .+|+++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 467899999999999999876 699999999998875 3689999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 008795 80 VDFAENDK 87 (553)
Q Consensus 80 V~~A~~~~ 87 (553)
|+|+..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=3e-16 Score=136.18 Aligned_cols=81 Identities=25% Similarity=0.487 Sum_probs=75.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...+++|||+|||+++++++|+++|+.||.|.+|+++.| ++++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456899999999999999999999999999999999876 55699999999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+...
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9854
No 137
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=128.26 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~L-ng~~I~GR~LrV~~ 82 (553)
...++|||+|||+++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.| ++..++|+.|+|+|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45789999999999999999999999999999999864 799999999999999999998 99999999999999
Q ss_pred ec
Q 008795 83 AE 84 (553)
Q Consensus 83 A~ 84 (553)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 138
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.8e-16 Score=128.97 Aligned_cols=76 Identities=28% Similarity=0.507 Sum_probs=71.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++|+++|+++|+.||.|.+|+++ ++||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3468999999999999999999999999999999987 34999999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+...
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9865
No 139
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=7.6e-17 Score=145.54 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFR--L---VIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vr--L---v~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~L 78 (553)
.++++|||+|||+++|+++|+++|+.||.|..|. + +....+|+++|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4678999999999999999999999999987741 1 1123579999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 008795 79 RVDFAENDK 87 (553)
Q Consensus 79 rV~~A~~~~ 87 (553)
+|.|++...
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999998654
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=6.5e-16 Score=131.55 Aligned_cols=76 Identities=18% Similarity=0.430 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 3 SSQHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 3 s~~srtVFVGNLP~-dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
..++++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|+|..++|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999998 99999999999999999999983 7999999999999999999999999999999999
Q ss_pred EecCC
Q 008795 82 FAEND 86 (553)
Q Consensus 82 ~A~~~ 86 (553)
+++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99754
No 141
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=3.3e-16 Score=136.18 Aligned_cols=77 Identities=25% Similarity=0.485 Sum_probs=72.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++++++|+++|++||.|++|+++ +|||||+|.+.++|++|++.|+|..|+|+.|+|+|+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 467999999999999999999999999999999987 799999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
+.+..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87543
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=4e-17 Score=141.04 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGP---VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~---V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
..+.++|||+|||+++||++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++|++ +++..|+||.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999988 89999999987 9999999999999999999999 999999999999
Q ss_pred EEEecCC
Q 008795 80 VDFAEND 86 (553)
Q Consensus 80 V~~A~~~ 86 (553)
|.++..+
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 143
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=133.09 Aligned_cols=78 Identities=35% Similarity=0.508 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++++++|+++|+.||.|. ++++. ++++|||||+|.+.++|++|++.|||..|+|+.|+|++++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999997 67765 4679999999999999999999999999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 144
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=136.92 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=73.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+|||+++||++|+++|+.| .|++|+|++|+. |+++|||||+|.+.++|++|+ .+++..|+||.|+|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 5799999999999999999999999 899999999976 999999999999999999999 6999999999999998865
Q ss_pred C
Q 008795 86 D 86 (553)
Q Consensus 86 ~ 86 (553)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=7.6e-16 Score=145.08 Aligned_cols=83 Identities=27% Similarity=0.492 Sum_probs=79.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++++++|+++|+.||.|++|++..|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
...
T Consensus 204 ~~~ 206 (216)
T 2qfj_A 204 TPP 206 (216)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 146
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=1.1e-15 Score=142.09 Aligned_cols=84 Identities=32% Similarity=0.572 Sum_probs=80.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++++++|+++|+.||.|.+|++..|+++|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 147
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=4.6e-16 Score=147.09 Aligned_cols=81 Identities=19% Similarity=0.415 Sum_probs=77.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
.+++|||+|||+++++++|+++|+.||.|++|+|+.|+ +|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 56899999999999999999999999999999999998 99999999999999999999999999999999999999997
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 148
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=127.67 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|+ ++|+++|+++|+.||.|++|+|. +++|||||+|.+.++|.+|++.|++..|+|+.|+|+|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999995 99999999999999999999984 56899999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
..+..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87543
No 149
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.5e-16 Score=141.32 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=72.7
Q ss_pred cEEEEecC----CCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 008795 7 RCVFVGNI----PYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKD----EET----ALSARR--NLQGYE 72 (553)
Q Consensus 7 rtVFVGNL----P~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d----~e~----A~~AI~--~Lng~~ 72 (553)
+.|||||| +|.++|++|+++|+.||+|.+|+++.|++||+++|||||+|.| .++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 323 889988 789999
Q ss_pred eCCEEEEEEEecCC
Q 008795 73 INGRQLRVDFAEND 86 (553)
Q Consensus 73 I~GR~LrV~~A~~~ 86 (553)
|+||.|+|++.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 150
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=9.3e-16 Score=139.52 Aligned_cols=80 Identities=34% Similarity=0.603 Sum_probs=77.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+||.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999974
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=140.99 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPV----VSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V----~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
.+.++|||+||||++||++|+++|+.||.| .+|+|++| .+|+++|||||+|.+.++|++|++. ++..|+||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 467899999999999999999999999986 68999999 5899999999999999999999986 99999999999
Q ss_pred EEEecCC
Q 008795 80 VDFAEND 86 (553)
Q Consensus 80 V~~A~~~ 86 (553)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.1e-15 Score=141.76 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=77.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|||+++||++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3578999999999999999999999999999999999999999999999999999999999975 899999999999998
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 754
No 153
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=6.2e-16 Score=140.62 Aligned_cols=79 Identities=28% Similarity=0.515 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++||++|+++|+.||.|++|+++.| ++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35789999999999999999999999999999999876 5899999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
.+++
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 154
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=5.4e-16 Score=135.95 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE-----EE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ-----LR 79 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~-----Lr 79 (553)
..++|||+|||++++|++|+++|++||.|++|+|+.| |||||+|.+.++|++||+.||+.+|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999865 89999999999999999999999999998 67
Q ss_pred EEEecCC
Q 008795 80 VDFAEND 86 (553)
Q Consensus 80 V~~A~~~ 86 (553)
|+.+...
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7776653
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.5e-16 Score=129.00 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=72.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEE-EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFR-LVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vr-Lv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
..++|||+|||+++++++|+++|+.||.|++|+ ++.|+.+|+ |||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 478999999999999999999999999999994 888876544 999999999999999999999999999999999
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 875
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7e-16 Score=136.79 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEE
Q 008795 3 SSQHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQLR 79 (553)
Q Consensus 3 s~~srtVFVGNLP~d-vTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Ln--g~~I~GR~Lr 79 (553)
..++++|||+|||++ ++|++|+++|+.||.|++|+|++ .||||||+|.+.++|.+|++.|+ +..|+||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446899999999998 99999999999999999999974 37999999999999999999885 4569999999
Q ss_pred EEEecCCC
Q 008795 80 VDFAENDK 87 (553)
Q Consensus 80 V~~A~~~~ 87 (553)
|+|+....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997644
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.3e-15 Score=126.74 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
+..+++|||+|||++++|++|+++|++| .|+++++. +++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3467899999999999999999999999 99999884 5799999999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+..+
T Consensus 75 a~~~ 78 (88)
T 1wg1_A 75 QPTD 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9754
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=7.7e-16 Score=139.41 Aligned_cols=80 Identities=23% Similarity=0.475 Sum_probs=76.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++ +++..++|+.|+|+||.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5789999999999999999999999999999999999999999999999999999999998 899999999999999986
Q ss_pred C
Q 008795 86 D 86 (553)
Q Consensus 86 ~ 86 (553)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 159
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.1e-16 Score=127.59 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=68.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
+.++++|||+|||++++|++|+++|+.||.|++|+++.+ ++|||||+|.+.++|++++. ..+.++|+.|+|.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISN 74 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEe
Confidence 457899999999999999999999999999999999865 68999999999999986533 23466999999999
Q ss_pred ecCCCC
Q 008795 83 AENDKG 88 (553)
Q Consensus 83 A~~~~~ 88 (553)
+.++..
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 986543
No 160
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9.6e-16 Score=133.74 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++++++|+++|++||.|++|+|.. .+|||||+|.+.++|++|++.|||..|+|+.|+|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999999874 47899999999999999999999999999999999998
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 161
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=5.9e-16 Score=139.72 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=72.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVV--SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~--~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
.+.++|||+|||+++||++|+++|+.| .|+ +|+|++|++ |+++|||||+|.+.++|++|++. ++..|+||.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 357899999999999999999999999 677 999999987 99999999999999999999985 7799999999999
Q ss_pred EecC
Q 008795 82 FAEN 85 (553)
Q Consensus 82 ~A~~ 85 (553)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 162
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.2e-15 Score=133.56 Aligned_cols=80 Identities=28% Similarity=0.530 Sum_probs=74.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
++|||+|||+++||++|+++|+.||.|.+|+++.|+ +|+++|||||+|.+.++|.+|++.++|..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999997 4889999999999999999999999999999999999999754
Q ss_pred C
Q 008795 87 K 87 (553)
Q Consensus 87 ~ 87 (553)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.59 E-value=2.1e-15 Score=142.00 Aligned_cols=82 Identities=29% Similarity=0.444 Sum_probs=74.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||+|||+++||++|+++|+.||.|++|++++|+.+|+++|||||+|.+.++|.+|++.|++..|+|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=130.45 Aligned_cols=80 Identities=29% Similarity=0.430 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRET---GKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~T---GksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
....++|||+|||++++|++|+++|++||.|. ++++.|+.+ |+++|||||+|.+.++|++|++.++ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34679999999999999999999999999999 889988887 8999999999999999999999984 57888888
Q ss_pred EEEecC
Q 008795 80 VDFAEN 85 (553)
Q Consensus 80 V~~A~~ 85 (553)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 776553
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=5.2e-15 Score=141.74 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=75.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+||++++||++|+++|+.||.|++|+|++|+ +.++|||||+|.+.++|.+|++.|||..|+||.|+|++|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35789999999999999999999999999999999985 5579999999999999999999999999999999999998
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=4.4e-15 Score=134.22 Aligned_cols=80 Identities=30% Similarity=0.489 Sum_probs=76.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING--RQLRVD 81 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G--R~LrV~ 81 (553)
...++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++.|+|..++| ++|+|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 357899999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred Ee
Q 008795 82 FA 83 (553)
Q Consensus 82 ~A 83 (553)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 167
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=5.3e-15 Score=133.02 Aligned_cols=79 Identities=25% Similarity=0.526 Sum_probs=75.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE--EEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ--LRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~--LrV~~ 82 (553)
..++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++.|||..++|+. |+|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999975 88888
Q ss_pred e
Q 008795 83 A 83 (553)
Q Consensus 83 A 83 (553)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 168
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=6.1e-15 Score=133.89 Aligned_cols=83 Identities=24% Similarity=0.434 Sum_probs=76.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETG--KPKGYGFCEYKDEETALSARRNLQGYEIN---GRQL 78 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TG--ksKGyAFVeF~d~e~A~~AI~~Lng~~I~---GR~L 78 (553)
+++++|||+|||+++||++|+++|++||.|.+|++++|+.+| +++|||||+|.+.++|++|++.|++..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 467999999999999999999999999999999999999887 89999999999999999999999998775 6778
Q ss_pred EEEEecCC
Q 008795 79 RVDFAEND 86 (553)
Q Consensus 79 rV~~A~~~ 86 (553)
++.++...
T Consensus 81 ~~~~~~~~ 88 (175)
T 3nmr_A 81 QMKPADSE 88 (175)
T ss_dssp EEEECGGG
T ss_pred EEcccccc
Confidence 88887654
No 169
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=3.7e-15 Score=125.27 Aligned_cols=76 Identities=28% Similarity=0.376 Sum_probs=63.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY--EINGRQLRV 80 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~--~I~GR~LrV 80 (553)
....++|||||||+++||++|+++|++||.|++|+|++| +||||||+|.+.++|++ +++. .++|+.|+|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 346789999999999999999999999999999999875 69999999999999884 4454 457999999
Q ss_pred EEecCCC
Q 008795 81 DFAENDK 87 (553)
Q Consensus 81 ~~A~~~~ 87 (553)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998653
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=3.4e-15 Score=135.17 Aligned_cols=79 Identities=22% Similarity=0.458 Sum_probs=74.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
++++|||+|||+++||++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|.+|++. +..++|+.|+|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999984 578999999999886
Q ss_pred C
Q 008795 85 N 85 (553)
Q Consensus 85 ~ 85 (553)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=5.3e-15 Score=121.54 Aligned_cols=73 Identities=27% Similarity=0.587 Sum_probs=67.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREV----G-------PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY 71 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~f----G-------~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~ 71 (553)
+.+.++|||+|||+++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4567999999999999999999999999 8 8999998755 799999999999999999 99999
Q ss_pred eeCCEEEEEEE
Q 008795 72 EINGRQLRVDF 82 (553)
Q Consensus 72 ~I~GR~LrV~~ 82 (553)
.|+|+.|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=1e-14 Score=137.59 Aligned_cols=78 Identities=24% Similarity=0.324 Sum_probs=70.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEe
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING--RQLRVDFA 83 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G--R~LrV~~A 83 (553)
-.+|||+||++++||++|+++|++||.|++|+|..+ +.+|||||+|.|.++|++|++.|||..|.| +.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 356899999999999999999999999999998643 358999999999999999999999999965 99999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+.+.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8753
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.8e-15 Score=130.60 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=71.3
Q ss_pred CCCCcEEEE--ecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----CC
Q 008795 3 SSQHRCVFV--GNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI-----NG 75 (553)
Q Consensus 3 s~~srtVFV--GNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I-----~G 75 (553)
..+.++||| |||+++++|++|+++|++||.|.+|.+..+ ||||||+|.+.++|++|++.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456789999 779999999999999999999999987632 79999999999999999999999998 78
Q ss_pred EEEEEEEecCCC
Q 008795 76 RQLRVDFAENDK 87 (553)
Q Consensus 76 R~LrV~~A~~~~ 87 (553)
+.|.|.|+....
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999998543
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.2e-14 Score=143.61 Aligned_cols=82 Identities=20% Similarity=0.454 Sum_probs=76.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLI----EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLr----e~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~L 78 (553)
..++++|||+|||+++||++|+ ++|+.||.|++|++.+ +|+++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4578999999999999999977 8999999999999875 78999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 008795 79 RVDFAENDK 87 (553)
Q Consensus 79 rV~~A~~~~ 87 (553)
+|+|++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997643
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1.1e-14 Score=132.28 Aligned_cols=79 Identities=20% Similarity=0.390 Sum_probs=73.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN---GRQLRVD 81 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~---GR~LrV~ 81 (553)
..++|||+|||+++|+++|+++|+.||.|+++++..|+ +|+++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56899999999999999999999999999999999996 6999999999999999999999999998775 4999999
Q ss_pred Eec
Q 008795 82 FAE 84 (553)
Q Consensus 82 ~A~ 84 (553)
||+
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=2.9e-14 Score=129.69 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=69.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEe
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGY-GFCEYKDEETALSARRNLQGYEING--RQLRVDFA 83 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGy-AFVeF~d~e~A~~AI~~Lng~~I~G--R~LrV~~A 83 (553)
-+|||+||++.+||++|+++|++||.|.+|++..+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 45779999999999999999999999999988754 2687 9999999999999999999999988 89999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8753
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.5e-14 Score=124.70 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=75.4
Q ss_pred CCCCcEEEEecCCC-----CCCHHHHHHHHhccCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 008795 3 SSQHRCVFVGNIPY-----DATEEQLIEICREVGPVVSFRLVIDRET-GKPKGYGFCEYKDEETALSARRNLQGYEINGR 76 (553)
Q Consensus 3 s~~srtVFVGNLP~-----dvTEedLre~Fs~fG~V~~vrLv~Dr~T-GksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR 76 (553)
..++++|+|+|+-. +-++++|++.|++||.|.+|+|..|+++ ++++|||||+|.+.++|.+|++.|||..++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999963 3478999999999999999999998764 68999999999999999999999999999999
Q ss_pred EEEEEEecCC
Q 008795 77 QLRVDFAEND 86 (553)
Q Consensus 77 ~LrV~~A~~~ 86 (553)
.|+|.++...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999753
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.7e-14 Score=138.96 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=73.6
Q ss_pred CCCcEEEEecCC-CCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIP-YDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP-~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
.++++|||+||+ +++|+++|+++|+.||.|.+|++++|+ +|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 899999999999999999999998763 79999999999999999999999999999999999
Q ss_pred ecCCC
Q 008795 83 AENDK 87 (553)
Q Consensus 83 A~~~~ 87 (553)
++...
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=2.4e-14 Score=131.08 Aligned_cols=77 Identities=26% Similarity=0.469 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
..++|||+|||+++++++|+++|+.||.|..+ ..+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|+|+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46899999999999999999999999988766 4689999999999999999999999999999999999999997
Q ss_pred CC
Q 008795 85 ND 86 (553)
Q Consensus 85 ~~ 86 (553)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=2.1e-14 Score=127.58 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+.++|||+|+ ++||++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|++..|+|+.|+|+|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999995 79999999999999999999985 56899999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
.....
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 86543
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=4.9e-14 Score=134.75 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=72.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~ 85 (553)
.++|||+|||+++|+++|+++|+.||.|.+|+|.+|. +|+++|||||+|.+.++|.+|++.++ ..|+||.|+|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999986 59999999999999999999998655 599999999999764
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.51 E-value=8.4e-14 Score=137.65 Aligned_cols=83 Identities=31% Similarity=0.544 Sum_probs=79.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
...++|||+|||+++++++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 008795 84 END 86 (553)
Q Consensus 84 ~~~ 86 (553)
...
T Consensus 173 ~~~ 175 (284)
T 3smz_A 173 DAG 175 (284)
T ss_dssp CGG
T ss_pred CCC
Confidence 764
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=121.85 Aligned_cols=74 Identities=20% Similarity=0.425 Sum_probs=66.6
Q ss_pred CCCcE-EEEecCCCCCCHHH----HHHHHhcc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 008795 4 SQHRC-VFVGNIPYDATEEQ----LIEICREV-GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ 77 (553)
Q Consensus 4 ~~srt-VFVGNLP~dvTEed----Lre~Fs~f-G~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~ 77 (553)
.++.+ |||+|||+++++++ |+++|+.| |+|.+| || |+|||+|.+.++|.+|++.|+|..|.||.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 35666 99999999999988 55899999 599998 44 99999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 008795 78 LRVDFAENDK 87 (553)
Q Consensus 78 LrV~~A~~~~ 87 (553)
|+|.||+.+.
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999998754
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=5.3e-14 Score=126.72 Aligned_cols=74 Identities=24% Similarity=0.424 Sum_probs=66.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEec
Q 008795 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGY-GFCEYKDEETALSARRNLQGYEING--RQLRVDFAE 84 (553)
Q Consensus 8 tVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGy-AFVeF~d~e~A~~AI~~Lng~~I~G--R~LrV~~A~ 84 (553)
.|||+||++.+|+++|+++|++||.|++|+|.. + .|| |||+|.+.++|.+|++.|||..|.| +.|+|+||+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 367999999999999999999999999999864 2 286 9999999999999999999999987 689999998
Q ss_pred CCC
Q 008795 85 NDK 87 (553)
Q Consensus 85 ~~~ 87 (553)
.+.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.50 E-value=5.1e-14 Score=139.72 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHhccCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 4 SQHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRE-TGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 4 ~~srtVFVGNLP~d-vTEedLre~Fs~fG~V~~vrLv~Dr~-TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
...++|||+|||++ +++++|+++|+.||.|.+|+++.|.. ||+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 35689999999999 99999999999999999999999877 6999999999999999999999 999999999999999
Q ss_pred EecCC
Q 008795 82 FAEND 86 (553)
Q Consensus 82 ~A~~~ 86 (553)
|+.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99864
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.49 E-value=7.3e-14 Score=138.06 Aligned_cols=84 Identities=25% Similarity=0.419 Sum_probs=78.4
Q ss_pred CCCcEEEEecCCCCC-CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPYDA-TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~dv-TEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
...++|||+|||+++ |+++|+++|+.||.|.+++|..|. +|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 357899999999995 999999999999999999999986 799999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008795 83 AENDKG 88 (553)
Q Consensus 83 A~~~~~ 88 (553)
+.++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 986543
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=1.1e-13 Score=136.71 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=71.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEe
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~-GR~LrV~~A 83 (553)
.+++|||+||++++++++|+++|+.||.|++|+++.++ +|||||+|.+.++|.+|++.|||..|+ |+.|+|+|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 57899999999999999999999999999999999664 689999999999999999999999999 999999998
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=1.3e-14 Score=132.69 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=73.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 3 s~~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
..+.++|||+|||+++||++|+++|+.||.+.. .++.|..+|+++|||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 456899999999999999999999999998776 445666789999999999999999999995 999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+...
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9764
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=9.9e-14 Score=134.22 Aligned_cols=78 Identities=18% Similarity=0.371 Sum_probs=73.9
Q ss_pred CCCcEEEEecCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 008795 4 SQHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (553)
Q Consensus 4 ~~srtVFVGNLP~-dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~ 82 (553)
.++++|||+|||+ +++|++|+++|+.||.|++|+++.|+ +|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4689999999999 99999999999999999999999875 79999999999999999999999999999999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.3e-13 Score=117.44 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=70.0
Q ss_pred CCCcEEEEecCCCCCC-----------HHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 008795 4 SQHRCVFVGNIPYDAT-----------EEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE 72 (553)
Q Consensus 4 ~~srtVFVGNLP~dvT-----------EedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~ 72 (553)
.++++|+|.||-...+ +++|+++|++||.|++|.| .|+ .++|||||+|.+.++|.+|++.|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4689999999944432 6899999999999999965 664 379999999999999999999999999
Q ss_pred eCCEEEEEEEecCCC
Q 008795 73 INGRQLRVDFAENDK 87 (553)
Q Consensus 73 I~GR~LrV~~A~~~~ 87 (553)
|+||.|+|+++....
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999998654
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=128.36 Aligned_cols=78 Identities=18% Similarity=0.369 Sum_probs=73.1
Q ss_pred CCcEEEEecCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 5 QHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~-dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
.+++|||+|||+ ++++++|+++|+.||.|.+|+++.|+ +|||||+|.+.++|.+|++.|+|..|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999999875 789999999999999999999999999999999999
Q ss_pred cCCC
Q 008795 84 ENDK 87 (553)
Q Consensus 84 ~~~~ 87 (553)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8653
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.42 E-value=3.7e-13 Score=133.53 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A 83 (553)
..++|||+|||+++++++|+++|+.|| .|.+|+++.|+. |+++|||||+|.+.++|.+|++.|+|..|+|+.|+|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999875 889999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008795 84 ENDKG 88 (553)
Q Consensus 84 ~~~~~ 88 (553)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 86543
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=2.2e-13 Score=135.49 Aligned_cols=78 Identities=23% Similarity=0.404 Sum_probs=70.3
Q ss_pred CCcEEEEecCCCCC---------CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--
Q 008795 5 QHRCVFVGNIPYDA---------TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI-- 73 (553)
Q Consensus 5 ~srtVFVGNLP~dv---------TEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I-- 73 (553)
..++||||||++++ +|++|+++|++||.|++|+|+.+ ||||||+|.+.++|+.|++.|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 57899999999998 79999999999999999999854 89999999999999999999999999
Q ss_pred ----------CCEEEEEEEecCCCC
Q 008795 74 ----------NGRQLRVDFAENDKG 88 (553)
Q Consensus 74 ----------~GR~LrV~~A~~~~~ 88 (553)
.|+.|+|+||+.+..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC----
T ss_pred cccccccccCCCCEEEEEEccCCCC
Confidence 899999999987543
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=5.6e-13 Score=131.58 Aligned_cols=81 Identities=25% Similarity=0.316 Sum_probs=74.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceeC---CEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ-GYEIN---GRQLRV 80 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Ln-g~~I~---GR~LrV 80 (553)
+.++|||+|||+++|+++|+++|+.||.|++|+++.| .+|+++|||||+|.+.++|.+|++.|+ +..+. ||.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5689999999999999999999999999999999999 689999999999999999999999995 44444 999999
Q ss_pred EEecCC
Q 008795 81 DFAEND 86 (553)
Q Consensus 81 ~~A~~~ 86 (553)
+++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 999864
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.40 E-value=3.9e-13 Score=129.43 Aligned_cols=77 Identities=22% Similarity=0.416 Sum_probs=69.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCe--eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE----EE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPV--VSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR----QL 78 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V--~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR----~L 78 (553)
++++|||+|||+++||++|+++|+.||.| ++++++.|+ |+.+|||||+|.+.++|.+|+..|||++|+|+ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999999999999999999999 899988775 66679999999999999999999999999887 46
Q ss_pred EEEEe
Q 008795 79 RVDFA 83 (553)
Q Consensus 79 rV~~A 83 (553)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 67665
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=8.2e-13 Score=114.94 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=73.9
Q ss_pred CCCCcEEEEecC--CCCCC--------HHHHHHHHhccCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCC
Q 008795 3 SSQHRCVFVGNI--PYDAT--------EEQLIEICREVGPVVSFRLVIDRET--GKPKGYGFCEYKDEETALSARRNLQG 70 (553)
Q Consensus 3 s~~srtVFVGNL--P~dvT--------EedLre~Fs~fG~V~~vrLv~Dr~T--GksKGyAFVeF~d~e~A~~AI~~Lng 70 (553)
..++++|.+.|+ +.+.. +++|++.|++||.|++|+|.+|+.+ ++++|||||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 357899999998 33433 4689999999999999999998865 47899999999999999999999999
Q ss_pred ceeCCEEEEEEEecCC
Q 008795 71 YEINGRQLRVDFAEND 86 (553)
Q Consensus 71 ~~I~GR~LrV~~A~~~ 86 (553)
..++||.|+|.++...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998754
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=2.3e-13 Score=118.09 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=63.6
Q ss_pred EecCCCCCCHHHHHHHH------------hccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008795 11 VGNIPYDATEEQLIEIC------------REVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (553)
Q Consensus 11 VGNLP~dvTEedLre~F------------s~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~L 78 (553)
+.||++++++++|+++| ++||.|++|+|.+|+ +|+++|||||+|.+.++|.+|++.|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777777666 999999999999886 48999999999999999999999999999999999
Q ss_pred EEEEe
Q 008795 79 RVDFA 83 (553)
Q Consensus 79 rV~~A 83 (553)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=4.2e-13 Score=125.56 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=71.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~-GR~LrV~~ 82 (553)
++++|||+|||+++++++|+++|+.|| .|.+|+++.+. +|||||+|.+.++|.+|++.|+|..|+ |+.|+|.|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999997542 799999999999999999999999999 99999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+++.
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9753
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.39 E-value=7.4e-13 Score=130.67 Aligned_cols=75 Identities=32% Similarity=0.527 Sum_probs=70.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~ 84 (553)
+.++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|+|..|+|+.|+|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 4689999999999999999999999999999998643 7999999999999999999999999999999999997
Q ss_pred C
Q 008795 85 N 85 (553)
Q Consensus 85 ~ 85 (553)
.
T Consensus 95 ~ 95 (261)
T 3sde_A 95 H 95 (261)
T ss_dssp C
T ss_pred c
Confidence 5
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=1.3e-12 Score=116.47 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=73.5
Q ss_pred CCCcEEEEecCC--CCC---CHHHHHHHHhccCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008795 4 SQHRCVFVGNIP--YDA---TEEQLIEICREVGPVVSFRLVIDRE----TGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (553)
Q Consensus 4 ~~srtVFVGNLP--~dv---TEedLre~Fs~fG~V~~vrLv~Dr~----TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~ 74 (553)
.++++|+|.|+- .++ -+++|++.|++||.|.+|+|..|+. +++++||+||+|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 368999999983 222 3689999999999999999999875 5678999999999999999999999999999
Q ss_pred CEEEEEEEecCC
Q 008795 75 GRQLRVDFAEND 86 (553)
Q Consensus 75 GR~LrV~~A~~~ 86 (553)
||.|+|.|+...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999999753
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.38 E-value=1.1e-12 Score=119.01 Aligned_cols=75 Identities=25% Similarity=0.571 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREV----G-------PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~f----G-------~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I 73 (553)
++++|||+|||+++||++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 67777664 44899999999999999999 8999999
Q ss_pred CCEEEEEEEecCC
Q 008795 74 NGRQLRVDFAEND 86 (553)
Q Consensus 74 ~GR~LrV~~A~~~ 86 (553)
+|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987643
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=8.1e-13 Score=127.80 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDF 82 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG-~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~-GR~LrV~~ 82 (553)
++++|||+|||+++++++|+++|+.|| .|.+|+++.+ .+|||||+|.+.++|.+|++.|+|..|+ |+.|+|.|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999998653 3789999999999999999999999999 99999999
Q ss_pred ecCC
Q 008795 83 AEND 86 (553)
Q Consensus 83 A~~~ 86 (553)
+++.
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9753
No 203
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=103.27 Aligned_cols=44 Identities=39% Similarity=0.639 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhcCHHHhhcCChHHHHHHHHHHHHHhhhhCCC
Q 008795 509 PDVESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQMQP 552 (553)
Q Consensus 509 ~~~q~~~~~qvl~lt~~q~~~lp~~~~~~~~~l~~~~~~~~~~~ 552 (553)
+++|++||+|||+||+|||++|||+||++|++||++|+++.+-|
T Consensus 6 ~~~q~~Li~QVLsLt~eQI~~LPp~qR~qI~~LR~q~~~~~~~~ 49 (49)
T 2j8p_A 6 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP 49 (49)
T ss_dssp HHTHHHHHHHHHTSCHHHHHTSCHHHHTHHHHHHHHHHCCCCCC
T ss_pred cccHHHHHHHHHhCCHHHHHhCCHHHHHHHHHHHHHHHhccCCC
Confidence 47899999999999999999999999999999999999986644
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.37 E-value=1.8e-12 Score=120.39 Aligned_cols=76 Identities=25% Similarity=0.574 Sum_probs=66.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICREV----G-------PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE 72 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~f----G-------~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~ 72 (553)
..+++|||+|||+++||++|+++|+.| | .|.++++ ++++|||||+|.+.++|++|+ .|+|..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999999999999999999999 4 5555554 556899999999999999999 899999
Q ss_pred eCCEEEEEEEecCC
Q 008795 73 INGRQLRVDFAEND 86 (553)
Q Consensus 73 I~GR~LrV~~A~~~ 86 (553)
|+|+.|+|.++...
T Consensus 75 ~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 75 FQGQSLKIRRPHDY 88 (198)
T ss_dssp ETTEEEEEECCCCC
T ss_pred EcCceEEEeCCCCC
Confidence 99999999998764
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.3e-11 Score=104.44 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=63.3
Q ss_pred CcEEEEecCC-------CCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008795 6 HRCVFVGNIP-------YDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (553)
Q Consensus 6 srtVFVGNLP-------~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~L 78 (553)
.++|.|.-.. .+++|++|+++|++||.|++|+|+ ++++|||||+|.+.++|++|++.++ .+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4566665433 458999999999999999999987 4779999999999999999999855 4689999
Q ss_pred EEEEecCCC
Q 008795 79 RVDFAENDK 87 (553)
Q Consensus 79 rV~~A~~~~ 87 (553)
+|+|++...
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999998654
No 206
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=2.5e-11 Score=126.48 Aligned_cols=76 Identities=26% Similarity=0.425 Sum_probs=66.7
Q ss_pred CCCCcEEEEec--CCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCE-
Q 008795 3 SSQHRCVFVGN--IPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI---NGR- 76 (553)
Q Consensus 3 s~~srtVFVGN--LP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I---~GR- 76 (553)
+.++++||||| |++++||++|+++|++||+|++|.+.. .||||||+|.+.++|++|++.|||.++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56789999999 589999999999999999999987642 479999999999999999999999988 345
Q ss_pred -EEEEEEec
Q 008795 77 -QLRVDFAE 84 (553)
Q Consensus 77 -~LrV~~A~ 84 (553)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57888875
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=1.1e-10 Score=103.36 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=67.4
Q ss_pred CCCcEEEEecCCCCCC----------HHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008795 4 SQHRCVFVGNIPYDAT----------EEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (553)
Q Consensus 4 ~~srtVFVGNLP~dvT----------EedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I 73 (553)
-++++|.+.|+=.... +++|++.|++||.|++|.|.++. .+||+||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4688999999833221 35789999999999999886542 589999999999999999999999999
Q ss_pred CCEEEEEEEecCC
Q 008795 74 NGRQLRVDFAEND 86 (553)
Q Consensus 74 ~GR~LrV~~A~~~ 86 (553)
+||.|+|.|+...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999999754
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=3.4e-09 Score=90.88 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=63.6
Q ss_pred CCCcEEEEecCC----CCCCH----HHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008795 4 SQHRCVFVGNIP----YDATE----EQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING 75 (553)
Q Consensus 4 ~~srtVFVGNLP----~dvTE----edLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G 75 (553)
+++-+|+|.-.+ .++.. .+|.+.|+.||.|+.++++.|+ +||+|.+.++|.+|++ |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 567788887766 23434 5789999999999999999874 7999999999999998 99999999
Q ss_pred EEEEEEEecCC
Q 008795 76 RQLRVDFAEND 86 (553)
Q Consensus 76 R~LrV~~A~~~ 86 (553)
|.|+|++++++
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999854
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=2.9e-09 Score=95.72 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=67.5
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceeCCEEEE
Q 008795 4 SQHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKD-EETALSARRNLQ--GYEINGRQLR 79 (553)
Q Consensus 4 ~~srtVFVGNLP~d-vTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d-~e~A~~AI~~Ln--g~~I~GR~Lr 79 (553)
..++.|||+||+++ +++++|+++|+.||.|.+|.+..|.. .|||+|.+ .++|..|++.++ +..|+|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35789999999999 99999999999999999999998754 59999999 899999999995 6788998888
Q ss_pred EEEecC
Q 008795 80 VDFAEN 85 (553)
Q Consensus 80 V~~A~~ 85 (553)
++....
T Consensus 90 ~evL~G 95 (121)
T 1owx_A 90 WEVLEG 95 (121)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 877653
No 210
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=6.4e-09 Score=99.95 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHhccCCeeEEEEeec----CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 008795 17 DATEEQLIEICREVGPVVSFRLVID----RETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (553)
Q Consensus 17 dvTEedLre~Fs~fG~V~~vrLv~D----r~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~~A~~~ 86 (553)
+-.+++|++.|++||.|.+++|..+ +++|+++|++||+|.+.++|.+|++.|||..++||.|+|.|+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3456889999999999999999855 455699999999999999999999999999999999999998753
No 211
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.4e-08 Score=87.55 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=62.5
Q ss_pred CCCcEEEEecCCCC-----CCH----HHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008795 4 SQHRCVFVGNIPYD-----ATE----EQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (553)
Q Consensus 4 ~~srtVFVGNLP~d-----vTE----edLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~ 74 (553)
+++-+|+|.-++.+ +.. .+|.+.|+.||.|+.++++.|+ +||+|.+.++|.+|++ |+|.+++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 56788999887643 323 4688999999999999999874 8999999999999998 9999999
Q ss_pred CEEEEEEEecC
Q 008795 75 GRQLRVDFAEN 85 (553)
Q Consensus 75 GR~LrV~~A~~ 85 (553)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998643
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=4.5e-06 Score=73.88 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhcc-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREV-----GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~f-----G~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~Lr 79 (553)
..++|-+-|||..+++..|+.+++.+ |.++.+.++-|. +-|+|+|.|..+|.+|.-.|+|.+|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36888899999999999999999999 999999999884 5789999999999999999999999999999
Q ss_pred EEEec
Q 008795 80 VDFAE 84 (553)
Q Consensus 80 V~~A~ 84 (553)
|.-..
T Consensus 94 ~gTv~ 98 (117)
T 2l9w_A 94 SGTIN 98 (117)
T ss_dssp EECHH
T ss_pred ecCHH
Confidence 97554
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.0012 Score=57.78 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCCcEEEEecCCCCCCH-----HHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008795 4 SQHRCVFVGNIPYDATE-----EQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTE-----edLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~L 78 (553)
+-.++|+|.||+.++-+ +.++++|..|+++..+...+.- .-..|.|.+.++|.+|-..|++..+.|+++
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 44578999999886522 5789999999999998887543 235799999999999999999999999999
Q ss_pred EEEEecCC
Q 008795 79 RVDFAEND 86 (553)
Q Consensus 79 rV~~A~~~ 86 (553)
+|-++...
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99999843
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.0058 Score=53.45 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=59.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHhc-----cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008795 4 SQHRCVFVGNIPYDATEEQLIEICRE-----VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (553)
Q Consensus 4 ~~srtVFVGNLP~dvTEedLre~Fs~-----fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~L 78 (553)
+-.++|.|.|||.+++++.|+-+|+. -|+|.+++... +-|+|+|.|.+.|++.++. ..+.|+|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45789999999999999999999986 25788877642 5689999999999999863 3578999999
Q ss_pred EEEEecC
Q 008795 79 RVDFAEN 85 (553)
Q Consensus 79 rV~~A~~ 85 (553)
.|.-..+
T Consensus 77 sV~P~~~ 83 (104)
T 2dhx_A 77 SLRPAPP 83 (104)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 8876544
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.51 E-value=0.022 Score=48.55 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=61.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCc--ceEEEEEeCCHHHHHHHHHHhCCceeC---C--EEEE
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKP--KGYGFCEYKDEETALSARRNLQGYEIN---G--RQLR 79 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGks--KGyAFVeF~d~e~A~~AI~~Lng~~I~---G--R~Lr 79 (553)
++|.|++||...||+++.+.++....+.....+..+.+.+. -.-|+|.|.+.+++....+.++|+.+- | ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57889999999999999999999988877776654433332 356899999999999999999998772 2 2245
Q ss_pred EEEecC
Q 008795 80 VDFAEN 85 (553)
Q Consensus 80 V~~A~~ 85 (553)
|++|-.
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 777653
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.19 E-value=0.012 Score=51.01 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ 69 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Ln 69 (553)
...+++| ++|.++...||.++|+.|| -..|+.+-| ..|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3556677 9999999999999999999 457788776 279999999999999998663
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.41 E-value=0.019 Score=49.96 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=46.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008795 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ 69 (553)
Q Consensus 7 rtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Ln 69 (553)
..++| ++|.++...||..+|+.|| -..|+.+-| ..|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45556 9999999999999999999 667888876 379999999999999998764
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.93 E-value=0.13 Score=45.88 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=56.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-EEEEEEEe
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING-RQLRVDFA 83 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~G-R~LrV~~A 83 (553)
..+.|.|-+.+.+. .+.|.+.|++||.|++.... ....+-.|.|.+..+|++|+. .||..|+| ..|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 36788888999986 45666779999999988751 124588999999999999996 59999975 66777775
Q ss_pred c
Q 008795 84 E 84 (553)
Q Consensus 84 ~ 84 (553)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.37 E-value=0.032 Score=49.99 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=29.6
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 008795 35 SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY 71 (553)
Q Consensus 35 ~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~ 71 (553)
.++|+.+. .+++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 46777775 478999999999999999999888764
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.09 E-value=0.028 Score=60.77 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=41.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~ 66 (553)
.++|||. ++.++++.+|.++|++||.|.++..-.++ .-|+.|||.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4789996 79999999999999999999998766543 3699999999999887764
No 221
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.44 E-value=0.14 Score=44.19 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=55.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCc--ceEEEEEeCCHHHHHHHHHHhCCceeC---C--EEE
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKP--KGYGFCEYKDEETALSARRNLQGYEIN---G--RQL 78 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGks--KGyAFVeF~d~e~A~~AI~~Lng~~I~---G--R~L 78 (553)
+-+|.|+.||...||+++.+.++..-++.....+..+.+-+. -.-|+|.|.+.++...-.+.++|+.+- | .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457889999999999998888776555433333222222111 245799999999999999999998772 2 235
Q ss_pred EEEEec
Q 008795 79 RVDFAE 84 (553)
Q Consensus 79 rV~~A~ 84 (553)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 677764
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.67 E-value=0.039 Score=49.29 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=37.5
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEEEecC
Q 008795 44 TGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRVDFAEN 85 (553)
Q Consensus 44 TGksKGyAFVeF~d~e~A~~AI~~L-ng~~I~GR~LrV~~A~~ 85 (553)
..+.+|+++|+|.+.++|++|++.+ ||..++| .++++++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4577999999999999999999999 9999999 999998764
No 223
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.13 E-value=0.15 Score=46.23 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=54.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeE-EEEeecC--------CCC-----CcceEEEEEeCCHHHHHHHHHHhCCc
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDR--------ETG-----KPKGYGFCEYKDEETALSARRNLQGY 71 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~-vrLv~Dr--------~TG-----ksKGyAFVeF~d~e~A~~AI~~Lng~ 71 (553)
...|.|-+.|.+.+ ..+-+.|++||.|.+ +....+. .+. ....+-.|.|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 44566778877765 455667999999876 2211100 000 124577899999999999996 6999
Q ss_pred eeCCEEEEEEEecC
Q 008795 72 EINGRQLRVDFAEN 85 (553)
Q Consensus 72 ~I~GR~LrV~~A~~ 85 (553)
.|+|..|-|...+.
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888888764
No 224
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.94 E-value=3.2 Score=45.04 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=45.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG 70 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng 70 (553)
...++|+ ++..|...+|++.|+.||. ++|+++-| ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4566665 9999999999999999994 56766644 3699999999999999998853
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=34.94 E-value=2.1e+02 Score=24.37 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-------ceeCCEE
Q 008795 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG-------YEINGRQ 77 (553)
Q Consensus 5 ~srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng-------~~I~GR~ 77 (553)
..+-+-|-|||..+-..++.-..+..|---.|..+ .|-|.+.|.+.++-.-|+..|-+ .+|.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 56778888999999998888778888876667655 36789999999999999887622 3567777
Q ss_pred EEEEEec
Q 008795 78 LRVDFAE 84 (553)
Q Consensus 78 LrV~~A~ 84 (553)
+.|-...
T Consensus 83 cdvisti 89 (129)
T 4eyt_A 83 CDVISTI 89 (129)
T ss_dssp EEEECCC
T ss_pred eeeeecC
Confidence 6665544
No 226
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.59 E-value=60 Score=25.30 Aligned_cols=68 Identities=10% Similarity=0.221 Sum_probs=40.5
Q ss_pred EEEEe-cCCCCCCHHHHHHHHhccCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008795 8 CVFVG-NIPYDATEEQLIEICREVGP-----VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (553)
Q Consensus 8 tVFVG-NLP~dvTEedLre~Fs~fG~-----V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~Lng~~I~GR~LrV~ 81 (553)
++||. +=-..++..+|..++..-+. |-.+++. | .|.||+-.. +.+..+++.|++..+.|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-D-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-S-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-C-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45552 12334566677777765443 4455553 2 378888864 45778889999999999999988
Q ss_pred Eec
Q 008795 82 FAE 84 (553)
Q Consensus 82 ~A~ 84 (553)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 227
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=27.37 E-value=43 Score=31.42 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHH----hCCCHHHHHHH
Q 008795 183 IMSEMKLMATQNKEQARQLLL----AKPPLLKALFQ 214 (553)
Q Consensus 183 iLs~LK~l~~~~P~~Ar~LL~----~nPQLa~AL~Q 214 (553)
.+.+|+.++.+||+....||. +||+|...|-+
T Consensus 34 qf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 34 DLLSLRQVVSGNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 456888999999999988888 99999887643
No 228
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=26.49 E-value=19 Score=27.99 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHHHHh-hCHHHHHHHHHhCCCHHHHHHH
Q 008795 174 KMSRNQLNEIMSEMKLMAT-QNKEQARQLLLAKPPLLKALFQ 214 (553)
Q Consensus 174 ~l~p~QL~eiLs~LK~l~~-~~P~~Ar~LL~~nPQLa~AL~Q 214 (553)
.++...|-++|..||.=.. +.-.++-.+|+.||+|-.|...
T Consensus 4 ~~~~~aLqqLl~tlksp~speqqqqvl~ILksNPqLMAAfIK 45 (59)
T 1kbh_B 4 SISPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIK 45 (59)
T ss_dssp SSSTTHHHHHHHHHHSCTTTTCSTHHHHHHTTSHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4677888899988887443 2346789999999999888765
No 229
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=25.34 E-value=79 Score=29.25 Aligned_cols=36 Identities=36% Similarity=0.605 Sum_probs=29.3
Q ss_pred CCHHHHHHHHhccCCe---eEEEEeecCCCCCcceEEEE
Q 008795 18 ATEEQLIEICREVGPV---VSFRLVIDRETGKPKGYGFC 53 (553)
Q Consensus 18 vTEedLre~Fs~fG~V---~~vrLv~Dr~TGksKGyAFV 53 (553)
.|+++|+++-...|.+ +++++..|.++|+.+.|||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5899999999999987 45667777558999999875
No 230
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=21.28 E-value=96 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhC-HHHHHHHHHhCC-CHHHHH
Q 008795 181 NEIMSEMKLMATQN-KEQARQLLLAKP-PLLKAL 212 (553)
Q Consensus 181 ~eiLs~LK~l~~~~-P~~Ar~LL~~nP-QLa~AL 212 (553)
-|+|+++..+...+ +++|+.+|..|- +|-.|+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av 39 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAI 39 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHH
Confidence 36788888888755 799999999876 666554
No 231
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.70 E-value=12 Score=34.00 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=16.7
Q ss_pred HHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeC
Q 008795 21 EQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYK 56 (553)
Q Consensus 21 edLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~ 56 (553)
+++.++|...|.|+.+. + .||||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C-----CCCeeEEeeC
Confidence 45666777777665543 1 2899999875
No 232
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.70 E-value=1.4e+02 Score=27.98 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=38.0
Q ss_pred EEEEecCCCC---------CCHHHHHHHH--hccCCeeEEEEeecCCCCCcceEEEEEeCCH-HHHHHHHH
Q 008795 8 CVFVGNIPYD---------ATEEQLIEIC--REVGPVVSFRLVIDRETGKPKGYGFCEYKDE-ETALSARR 66 (553)
Q Consensus 8 tVFVGNLP~d---------vTEedLre~F--s~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~-e~A~~AI~ 66 (553)
.+.|-|++.+ ....+|++.| +.|.+++ ++.+.++ ..+.|++.|+|.+. .-...|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4567788872 2346899977 8998866 4445554 34689999999854 44556665
No 233
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.50 E-value=2.5e+02 Score=20.69 Aligned_cols=56 Identities=5% Similarity=0.004 Sum_probs=42.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 008795 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68 (553)
Q Consensus 6 srtVFVGNLP~dvTEedLre~Fs~fG~V~~vrLv~Dr~TGksKGyAFVeF~d~e~A~~AI~~L 68 (553)
..++.|.++.-.-=...|++.+.. ..|..+.+-.. .+-+.|+|.+.+....+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 356788888877778889999999 88888877543 456778888666677777653
Done!