BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008796
(553 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y6X3|SCC4_HUMAN MAU2 chromatid cohesion factor homolog OS=Homo sapiens GN=MAU2 PE=1
SV=2
Length = 613
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 144/343 (41%), Gaps = 32/343 (9%)
Query: 154 DKLVLAPSPMD-GEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL 212
D +L +P D WLPK + LV L+ V+ G ++ + + ++ KL
Sbjct: 268 DDEILPSNPADLFHWLPKEHMCVLVYLVTVMHSMQAGYLEKAQKYTDKALMQLE----KL 323
Query: 213 GITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF 272
+ D S I ++ ++LL E+ + L A + + Q+ +
Sbjct: 324 KMLDC--------SPI-LSSFQVILL----EHIIMCRLVTGHKATALQEISQVCQLCQQS 370
Query: 273 PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332
P + + + L G Y SV C A + A ++T + + A A Y G
Sbjct: 371 PRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTALRLTNHQELWAFIVTNLASVYIREG 430
Query: 333 D--AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390
+ E ++ I P + + + +R A+ + GL Q + EA+ L + L++
Sbjct: 431 NRHQEVLYSLLERINPDHSFPVSSHCLR--AAAFYVRGLFSFFQGRYNEAKRFLRETLKM 488
Query: 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 450
++ N +L + L +LG++ L + ++ ++ ++ LA K+ D+ Q+W+ ++L
Sbjct: 489 SNAEDLN-RLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRD 547
Query: 451 LYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELIS 493
L + GN M+ E + + Q+ L D HIE S
Sbjct: 548 LNKAC---GNAMDAHEAAQMHQNFSQQLLQD------HIEACS 581
>sp|Q9D2X5|SCC4_MOUSE MAU2 chromatid cohesion factor homolog OS=Mus musculus GN=Mau2 PE=2
SV=3
Length = 619
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 144/343 (41%), Gaps = 32/343 (9%)
Query: 154 DKLVLAPSPMD-GEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL 212
D +L +P D WLPK + LV L+ V+ G ++ + + ++ KL
Sbjct: 274 DDEILPSNPADLFHWLPKEHMCVLVYLVTVMHSMQAGYLEKAQKYTDKALMQLE----KL 329
Query: 213 GITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF 272
+ D S I ++ ++LL E+ + L A + + Q+ +
Sbjct: 330 KMLDC--------SPI-LSSFQVILL----EHIIMCRLVTGHKATALQEISQVCQLCQQS 376
Query: 273 PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332
P + + + L G Y SV C A + A ++T + + A A Y G
Sbjct: 377 PRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTALRLTNHQELWAFIVTNLASVYIREG 436
Query: 333 D--AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390
+ E ++ I P + + + +R A+ + GL Q + EA+ L + L++
Sbjct: 437 NRHQEVLYSLLERINPDHSFPVSSHCLR--AAAFYVRGLFSFFQGRYNEAKRFLRETLKM 494
Query: 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 450
++ N +L + L +LG++ L + ++ ++ ++ LA K+ D+ Q+W+ ++L
Sbjct: 495 SNAEDLN-RLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRD 553
Query: 451 LYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELIS 493
L + GN M+ E + + Q+ L D HIE S
Sbjct: 554 LNKAC---GNAMDAHEAAQMHQNFSQQLLQD------HIEACS 587
>sp|B4ZIX8|SCC4_XENLA MAU2 chromatid cohesion factor homolog OS=Xenopus laevis GN=mau2
PE=1 SV=1
Length = 607
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 132/312 (42%), Gaps = 22/312 (7%)
Query: 154 DKLVLAPSPMD-GEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL 212
D +L +P D WLPK + LV L+ V+ G ++ + + ++ KL
Sbjct: 263 DDEILPSNPADLFHWLPKEHMCVLVYLVTVMHSMQAGYLEKAQKYTDKALMQLE----KL 318
Query: 213 GITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF 272
+ D S+ ++ ++LL E+ + L A + + Q+ +
Sbjct: 319 KMLD---------SSPILSSFQVILL----EHIIMCRLVTGHKATALQEISQLCQLCQQS 365
Query: 273 PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332
P + + + L G Y SV C A + A ++T + + A Y G
Sbjct: 366 PRLFSNHAAQLHTLLGLYCISVNCMDNAEAQFTTALRLTTHQELWTFIVTNLASVYIREG 425
Query: 333 DAESSSQAI-DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391
+ A+ + I P + + + +R A+ + GL Q + EA+ L + L+++
Sbjct: 426 NRHQELYALLERINPDHNFPVSSHCLR--AAAFYIRGLFSFFQGRYNEAKRFLRETLKMS 483
Query: 392 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL 451
+ N +L + L +LG++ L + ++ ++ ++ LA K+ D+ Q+W+ ++L L
Sbjct: 484 NAEDLN-RLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRDL 542
Query: 452 YQQLGDRGNEME 463
+ G+ + E
Sbjct: 543 NKACGNNIDAHE 554
>sp|B1H1Z8|SCC4_XENTR MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis
GN=mau2 PE=2 SV=1
Length = 604
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/312 (20%), Positives = 132/312 (42%), Gaps = 22/312 (7%)
Query: 154 DKLVLAPSPMD-GEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL 212
D +L +P D WLPK + LV L+ V+ G ++ + + ++ KL
Sbjct: 260 DDEILPSNPADLFHWLPKEHMCVLVYLVTVMHSMQAGYLEKAQKYTDKALMQLE----KL 315
Query: 213 GITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF 272
+ D S+ ++ ++LL E+ + L A + + Q+ +
Sbjct: 316 KMLD---------SSPILSSFQVILL----EHIIMCRLVTGHKATALQEISQVCQLCQQS 362
Query: 273 PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332
P + + + L G Y SV C A + A ++T + + A Y G
Sbjct: 363 PRLFSNHAAQLHTLLGLYCISVNCMDNAEAQFTTALRLTTHQELWTFIVTNLASVYIREG 422
Query: 333 DAESSSQAI-DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391
+ ++ + I P + + + +R A+ + GL Q + EA+ L + L+++
Sbjct: 423 NRHQELYSLLERINPDHNFPVSSHCLR--AAAFYIRGLFSFFQGRYNEAKRFLRETLKMS 480
Query: 392 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL 451
+ N +L + L +LG++ L + ++ ++ ++ LA K+ D+ Q+W+ ++L L
Sbjct: 481 NAEDLN-RLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRDL 539
Query: 452 YQQLGDRGNEME 463
+ G+ + E
Sbjct: 540 NKACGNNIDAHE 551
>sp|Q16NZ8|SCC4_AEDAE MAU2 chromatid cohesion factor homolog OS=Aedes aegypti
GN=AAEL011819 PE=3 SV=1
Length = 620
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 124/300 (41%), Gaps = 24/300 (8%)
Query: 167 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226
WLPK +Y LV L+ V G + + + + I+ ++ Q +
Sbjct: 268 WLPKEQLYVLVYLVTVSHSMMAGYMDKAQKYTEKALTQIE-------------KLKSQEN 314
Query: 227 AIWMAGVYLMLLMQFLENKVAV---ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMI 283
+A ++LL + ++ + L A++ + N F +L+ + +
Sbjct: 315 KPILAVFQIILLEHIIMCRLVMGNKSLAIKEIALAKDVCLSSSNKF-----LLKKHSAQL 369
Query: 284 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDL 343
L G YA S + A + T + ++ + A+ Y + + Q +D
Sbjct: 370 HCLLGLYAMSASYFEHAERQFFACINDTTERDLKLFANLNLAIVYLRMKREQELRQILDQ 429
Query: 344 IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 403
+ + N S ++ GL + F EA+ L + L++A+ N +L S
Sbjct: 430 VQQ--ENSQCSNSQALMGSFYYVQGLNAFHKSSFHEAKRFLRETLKMANAEDLN-RLTSC 486
Query: 404 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 463
L +L ++ L++ ++ ++ ++ ++ LA K+ DI Q+W ++L L++ L + E E
Sbjct: 487 SLVLLSHVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMLKEPALETE 546
>sp|A7SUU7|SCC4_NEMVE MAU2 chromatid cohesion factor homolog OS=Nematostella vectensis
GN=v1g174619 PE=3 SV=1
Length = 611
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 125/291 (42%), Gaps = 19/291 (6%)
Query: 166 EWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQH 225
EWLP+ + LV L+ V+ G + ++ + ++ +L +T
Sbjct: 273 EWLPREHLCVLVYLVTVMHSMYAGYMDKVLKYSAKALNQVE----RLKVT---------- 318
Query: 226 SAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEM 285
S + V+ ++L LE+ + + + A + + Q+ +++A + ++
Sbjct: 319 SPSALVSVFQLML---LEHTIMCRVVQGQPAHAIKEISQVYQTLKHENCLVRAHKPILHT 375
Query: 286 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIG 345
L G YA S+ +A H+ A K ++ + ++ Y G+++ + ++
Sbjct: 376 LLGLYAMSMNLMEQATTHFNIAFKTADNPVLANFVGLNLSIIYIRAGESKQIELS-SVMS 434
Query: 346 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 405
++ N +A ++ L Q Q+A+ L + L+IA+ N +L + L
Sbjct: 435 SIHPSNMATNSHSLQAGYYYVCALRAFFQTRIQDAKKYLRESLKIANAEDLN-RLTACSL 493
Query: 406 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 456
+LG+ LA + +A ++ + L+ K+ D Q+WA +L LY LG
Sbjct: 494 VLLGHTFLASGNPQEALNMVLPATQLSGKIPDNYIQLWAAGLLRDLYGMLG 544
>sp|B4M4L4|SCC4_DROVI MAU2 chromatid cohesion factor homolog OS=Drosophila virilis
GN=GJ10962 PE=3 SV=1
Length = 621
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 132/329 (40%), Gaps = 23/329 (6%)
Query: 167 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226
WLPK +Y LV L+ V G + + + + I+ LKL +
Sbjct: 274 WLPKEQLYVLVYLVTVSHSMMAGYMDKAQKYTEKALTQIEK--LKLQEDKSI-------- 323
Query: 227 AIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFP--TILQACESMIE 284
V+ ++L LE+ V + A + ++ I P +L+ + +
Sbjct: 324 ----LSVFKVIL---LEHIVMCRMVMGNRELAIREIAAARDVCIAAPHRNLLKRHSAQLH 376
Query: 285 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLI 344
L G Y+ S + A ++ T + ++ + A+ Y Q +D +
Sbjct: 377 CLIGLYSMSTSFFEHAERQFLVCVNETGERDLKLFANLNLAIIYLRTKREADLKQILDAV 436
Query: 345 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 404
+ T + ++ GL + F EA+ L + L++A+ N +L S
Sbjct: 437 ST--ENTHTYSSQALMGGFYYVQGLHAFHKNSFHEAKRFLRETLKMANAEDLN-RLTSCS 493
Query: 405 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEN 464
L +L ++ L++ ++ ++ ++ ++ LA K+ DI Q+W ++L L++ D +E E
Sbjct: 494 LVLLSHVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMSKDAQHEKEA 553
Query: 465 DEYRRKKLDELQKRLADAYSSIHHIELIS 493
K + L S HH EL++
Sbjct: 554 YANHVKYSENLIADQRKCVQSAHH-ELVN 581
>sp|B4PS83|SCC4_DROYA MAU2 chromatid cohesion factor homolog OS=Drosophila yakuba
GN=GE24275 PE=3 SV=1
Length = 632
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 22/297 (7%)
Query: 167 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226
WLPK +Y LV L+ V G + + + + I+ LK Q
Sbjct: 276 WLPKEQLYVLVYLVTVSHSMMAGYMDKAQKYTEKALTQIEK--LK------------QQE 321
Query: 227 AIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFP--TILQACESMIE 284
+ V+ ++L LE+ V + A + ++ + P T+L+ + +
Sbjct: 322 DKPILSVFKVIL---LEHIVMCRMVMGNRELAIREIAAARDVCMAAPQRTLLRRHSAQLH 378
Query: 285 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLI 344
L G Y+ S + A +V T + ++ + A+ Y Q +D +
Sbjct: 379 CLIGLYSMSTNLFEHAERQFVVCVSETSERDLKLFANLNLAIIYLRTKRDTDLKQILDAV 438
Query: 345 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 404
+ T + ++ GL + F EA+ L + L++A+ N +L S
Sbjct: 439 ST--ENTHTYSSQALMGGFYYVQGLHAFHKNSFHEAKRFLRETLKMANAEDLN-RLTSCS 495
Query: 405 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE 461
L +L ++ L++ ++ ++ ++ ++ LA K+ DI Q+W ++L L++ D +E
Sbjct: 496 LVLLSHVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMSKDVQHE 552
>sp|B4JHK2|SCC4_DROGR MAU2 chromatid cohesion factor homolog OS=Drosophila grimshawi
GN=GH18976 PE=3 SV=1
Length = 623
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 133/329 (40%), Gaps = 23/329 (6%)
Query: 167 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226
WLPK +Y LV L+ V G + + + + I+ LKL +
Sbjct: 274 WLPKEQLYVLVYLVTVSHSMMAGYMDKAQKYTEKALTQIEK--LKLQEDKSI-------- 323
Query: 227 AIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFP--TILQACESMIE 284
V+ ++L LE+ V + A + ++ + P ++L+ + +
Sbjct: 324 ----LSVFKVIL---LEHIVMCRMVMGNRELAIREIAAARDVCLAVPHRSLLKRHSAQLH 376
Query: 285 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLI 344
L G Y+ S + A ++ T + ++ + A+ Y Q +D +
Sbjct: 377 CLIGLYSMSTSFFEHAERQFLVCVNETGERDLKLFANLNLAIIYLRTKRDADLKQILDAV 436
Query: 345 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 404
+ T + ++ GL + F EA+ L + L++A+ N +L S
Sbjct: 437 ST--ENTHTYSSQALMGGFYYVQGLHAFHKNSFHEAKRFLRETLKMANAEDLN-RLTSCS 493
Query: 405 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEN 464
L +L ++ L++ ++ ++ ++ ++ LA K+ DI Q+W ++L L++ D +E E
Sbjct: 494 LVLLSHVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMSKDVQHEKEA 553
Query: 465 DEYRRKKLDELQKRLADAYSSIHHIELIS 493
K + L S HH EL++
Sbjct: 554 YANHVKYSENLIADQRKCVQSAHH-ELVN 581
>sp|B0WYS3|SCC4_CULQU MAU2 chromatid cohesion factor homolog OS=Culex quinquefasciatus
GN=CPIJ012302 PE=3 SV=1
Length = 616
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/302 (18%), Positives = 126/302 (41%), Gaps = 28/302 (9%)
Query: 167 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226
WLPK +Y LV L+ V G + + + + I+ ++ Q +
Sbjct: 268 WLPKEQLYVLVYLVTVSHSMMAGYMDKAQKYTEKALTQIE-------------KLKSQEN 314
Query: 227 AIWMAGVYLMLLMQFLENKVAV---ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMI 283
+A ++LL + ++ + L A++ + + F +L+ +
Sbjct: 315 KPILAVFQIILLEHIIMCRLVMGNKSLAIKEIALAKDVCLSSSHKF-----LLKKHSPQL 369
Query: 284 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDL 343
L G Y+ S + A + + T + ++ + A+ Y + +D
Sbjct: 370 HCLLGLYSMSASLFDHAERQFYTCIQETTERDLKLFANLNLAIVYLRMKREPDLRAILDQ 429
Query: 344 IGPVYQMKDTI--NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 401
+ Q ++++ N S ++ GL + F EA+ L + L++A+ N +L
Sbjct: 430 V----QQENSLCSNSQALMGSFYYVQGLNAFHKSSFHEAKRFLRETLKMANAEDLN-RLT 484
Query: 402 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE 461
S L +L ++ L++ ++ ++ ++ ++ LA K+ DI Q+W ++L L++ L + E
Sbjct: 485 SCSLVLLSHVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMLKEPALE 544
Query: 462 ME 463
E
Sbjct: 545 QE 546
>sp|Q8SYD0|TTC19_DROME Tetratricopeptide repeat protein 19 homolog, mitochondrial
OS=Drosophila melanogaster GN=CG15173 PE=2 SV=1
Length = 369
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 367 YGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA---LHDTVQARE 423
+G LLM+Q + EA+N + N G + S +TIL N+++A L +ARE
Sbjct: 234 FGQLLMKQGKYLEAKNLFKEAFDTLINVYGAVNDAS--VTILNNISVAYVNLEKYAEARE 291
Query: 424 ILRSSLTLAKKLYD 437
L ++ L K+L D
Sbjct: 292 TLLEAMELTKELKD 305
>sp|A3CL11|METE_STRSV 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Streptococcus sanguinis (strain
SK36) GN=metE PE=3 SV=1
Length = 750
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 44 LGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLS 103
LGL+ ++ F L++ D+++ D +DA + A ++ ++ +L +E L++
Sbjct: 150 LGLVTRPVVVGPFTLLQVSDFEDGVAPADFVDALVVAYQEVFAKLAELGAERIQLDEPSL 209
Query: 104 RPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPM 163
DL + E++ KL L D G E L +YFG+ R + D + L P+
Sbjct: 210 VKDLSAEEKALFLDLYKKL------LADKK--GLEVLVQTYFGDVRDIYADLVQL---PV 258
Query: 164 DG 165
D
Sbjct: 259 DA 260
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 172 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL----GITDGVREV----DL 223
A+ A VDL + +GR G+ + ++R + Q + + LLKL G+ D R+V
Sbjct: 242 ALKACVDLKDLRVGR--GIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSE 299
Query: 224 QHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMI 283
++ W + L+ L KV V + F + QE ++ + TIL AC +
Sbjct: 300 RNVVTWNS------LISVLSKKVRVHEMFNLFRKMQEEMIGFS--WATLTTILPACSRVA 351
Query: 284 EMLRGQYAHS 293
+L G+ H+
Sbjct: 352 ALLTGKEIHA 361
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,702,376
Number of Sequences: 539616
Number of extensions: 6951243
Number of successful extensions: 22955
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 22925
Number of HSP's gapped (non-prelim): 78
length of query: 553
length of database: 191,569,459
effective HSP length: 123
effective length of query: 430
effective length of database: 125,196,691
effective search space: 53834577130
effective search space used: 53834577130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)